Query 004400
Match_columns 756
No_of_seqs 638 out of 4855
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 00:01:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4asz_A BDNF/NT-3 growth factor 100.0 3.8E-55 1.3E-59 456.7 17.8 256 416-687 13-288 (299)
2 4gt4_A Tyrosine-protein kinase 100.0 9.9E-55 3.4E-59 455.5 20.9 256 417-688 27-306 (308)
3 4aoj_A High affinity nerve gro 100.0 1.5E-54 5E-59 458.6 20.1 257 416-688 41-319 (329)
4 3omv_A RAF proto-oncogene seri 100.0 6.9E-54 2.4E-58 447.1 22.8 257 416-686 36-298 (307)
5 4b9d_A Serine/threonine-protei 100.0 1.4E-52 4.8E-57 443.2 22.6 249 416-681 24-276 (350)
6 4fih_A Serine/threonine-protei 100.0 1.7E-52 5.8E-57 441.9 23.0 249 416-681 74-323 (346)
7 4g3f_A NF-kappa-beta-inducing 100.0 4.4E-52 1.5E-56 437.5 19.0 252 415-686 57-314 (336)
8 4aw0_A HPDK1, 3-phosphoinositi 100.0 8.9E-52 3.1E-56 429.8 20.9 247 416-680 32-283 (311)
9 4fie_A Serine/threonine-protei 100.0 2.8E-51 9.6E-56 443.2 24.4 250 415-681 150-400 (423)
10 3fpq_A Serine/threonine-protei 100.0 1.4E-51 4.9E-56 426.5 20.8 246 419-681 29-282 (290)
11 3hyh_A Carbon catabolite-derep 100.0 7.2E-51 2.5E-55 417.4 23.7 246 416-682 13-263 (275)
12 4ase_A Vascular endothelial gr 100.0 2.1E-51 7.1E-56 437.9 16.5 259 414-687 62-346 (353)
13 3hmm_A TGF-beta receptor type- 100.0 6.2E-51 2.1E-55 427.8 19.0 264 416-687 3-296 (303)
14 3ubd_A Ribosomal protein S6 ki 100.0 1.3E-50 4.4E-55 421.3 17.8 242 416-676 24-271 (304)
15 4g31_A Eukaryotic translation 100.0 6.5E-49 2.2E-53 410.4 18.8 248 416-681 5-279 (299)
16 4b99_A Mitogen-activated prote 100.0 1.7E-46 5.7E-51 407.1 24.6 262 416-682 54-345 (398)
17 4f9c_A Cell division cycle 7-r 100.0 6.4E-46 2.2E-50 398.3 23.5 203 409-620 14-250 (361)
18 3uto_A Twitchin; kinase, muscl 100.0 2.2E-45 7.4E-50 418.0 23.6 253 415-682 156-411 (573)
19 2qkw_B Protein kinase; three-h 100.0 2E-45 6.8E-50 391.4 21.6 277 410-689 33-316 (321)
20 3v5w_A G-protein coupled recep 100.0 1.7E-45 5.8E-50 415.2 21.7 250 414-681 187-449 (689)
21 3uim_A Brassinosteroid insensi 100.0 3.2E-45 1.1E-49 390.7 22.3 279 408-686 22-309 (326)
22 3s95_A LIMK-1, LIM domain kina 100.0 1.5E-43 5.2E-48 374.9 22.8 261 415-689 9-283 (310)
23 3fxz_A Serine/threonine-protei 100.0 3.9E-43 1.3E-47 369.2 24.2 252 414-682 18-270 (297)
24 4hcu_A Tyrosine-protein kinase 100.0 3.4E-43 1.1E-47 364.3 21.1 256 415-687 9-265 (269)
25 3kul_A Ephrin type-A receptor 100.0 2.2E-43 7.4E-48 376.1 18.8 258 415-688 48-313 (325)
26 3zgw_A Maternal embryonic leuc 100.0 4.3E-43 1.5E-47 375.7 21.2 252 413-682 7-261 (347)
27 3sxs_A Cytoplasmic tyrosine-pr 100.0 9.6E-43 3.3E-47 360.6 23.0 258 414-688 6-264 (268)
28 2psq_A Fibroblast growth facto 100.0 4.7E-43 1.6E-47 380.1 21.0 258 415-688 80-364 (370)
29 3fe3_A MAP/microtubule affinit 100.0 1.4E-42 4.6E-47 369.7 23.4 249 414-682 13-265 (328)
30 3p86_A Serine/threonine-protei 100.0 6.4E-43 2.2E-47 369.6 20.2 260 414-688 35-298 (309)
31 4eqm_A Protein kinase; transfe 100.0 3.7E-42 1.3E-46 361.3 24.4 261 415-688 10-275 (294)
32 2nru_A Interleukin-1 receptor- 100.0 9.6E-42 3.3E-46 360.5 27.4 274 408-687 17-305 (307)
33 2qol_A Ephrin receptor; recept 100.0 8.8E-43 3E-47 378.2 19.8 258 415-688 44-309 (373)
34 3gen_A Tyrosine-protein kinase 100.0 1.7E-42 5.9E-47 361.7 21.0 257 414-687 22-279 (283)
35 2c30_A Serine/threonine-protei 100.0 5.9E-42 2E-46 364.3 25.4 248 418-682 47-295 (321)
36 4aw2_A Serine/threonine-protei 100.0 9.8E-43 3.4E-47 383.7 19.5 263 408-682 66-339 (437)
37 3soc_A Activin receptor type-2 100.0 4.5E-43 1.5E-47 373.2 15.9 266 415-687 23-317 (322)
38 3cbl_A C-FES, proto-oncogene t 100.0 3.4E-43 1.2E-47 382.5 15.2 257 414-686 112-372 (377)
39 2izr_A Casein kinase I isoform 100.0 5.1E-42 1.8E-46 366.5 23.7 262 415-689 8-282 (330)
40 3op5_A Serine/threonine-protei 100.0 3.3E-42 1.1E-46 373.2 21.9 269 414-691 33-332 (364)
41 1qcf_A Haematopoetic cell kina 100.0 1.5E-42 5E-47 386.9 19.7 259 413-689 185-445 (454)
42 1o6l_A RAC-beta serine/threoni 100.0 7.2E-42 2.5E-46 365.2 23.8 249 415-682 4-261 (337)
43 1tki_A Titin; serine kinase, m 100.0 4E-42 1.4E-46 365.4 21.5 252 415-682 4-258 (321)
44 3ugc_A Tyrosine-protein kinase 100.0 2.7E-43 9.4E-48 370.1 11.9 262 415-688 9-291 (295)
45 3niz_A Rhodanese family protei 100.0 2E-41 6.9E-46 358.6 26.2 262 415-681 20-300 (311)
46 3l9p_A Anaplastic lymphoma kin 100.0 1.1E-42 3.7E-47 377.0 16.6 258 415-688 70-345 (367)
47 2vd5_A DMPK protein; serine/th 100.0 2.5E-42 8.5E-47 377.9 19.6 262 408-682 53-328 (412)
48 3v8s_A RHO-associated protein 100.0 3E-42 1E-46 377.0 19.8 259 409-682 62-330 (410)
49 1opk_A P150, C-ABL, proto-onco 100.0 3.5E-42 1.2E-46 387.5 20.9 257 414-687 218-477 (495)
50 2yab_A Death-associated protei 100.0 9.7E-42 3.3E-46 367.5 23.4 252 415-682 11-273 (361)
51 3poz_A Epidermal growth factor 100.0 2E-42 7E-47 369.0 18.0 256 415-687 14-277 (327)
52 1kob_A Twitchin; kinase, intra 100.0 2.1E-41 7.1E-46 368.3 26.2 253 415-682 50-305 (387)
53 1csn_A Casein kinase-1; phosph 100.0 1.9E-41 6.4E-46 356.5 24.5 261 415-690 9-285 (298)
54 1mp8_A Focal adhesion kinase 1 100.0 2.7E-42 9.3E-47 359.9 17.8 257 414-687 13-275 (281)
55 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 3.9E-42 1.3E-46 383.0 20.1 259 414-690 182-442 (452)
56 3lb7_A RAF proto-oncogene seri 100.0 1.9E-41 6.5E-46 358.0 24.3 260 415-688 35-300 (307)
57 3txo_A PKC-L, NPKC-ETA, protei 100.0 5.7E-42 1.9E-46 368.4 20.4 249 414-681 21-280 (353)
58 3t9t_A Tyrosine-protein kinase 100.0 5.7E-42 2E-46 354.4 19.5 256 415-687 7-263 (267)
59 1ob3_A PFPK5, cell division co 100.0 1.1E-41 3.6E-46 356.8 21.5 262 416-682 2-281 (288)
60 2y0a_A Death-associated protei 100.0 1.8E-41 6.3E-46 361.3 23.6 252 415-682 10-272 (326)
61 1luf_A Muscle-specific tyrosin 100.0 3.8E-42 1.3E-46 369.6 18.5 262 411-688 42-335 (343)
62 3tt0_A Basic fibroblast growth 100.0 5.7E-42 1.9E-46 373.6 19.7 261 414-690 67-354 (382)
63 4euu_A Serine/threonine-protei 100.0 5.1E-41 1.7E-45 357.0 25.7 265 415-684 8-305 (319)
64 3dtc_A Mitogen-activated prote 100.0 1.1E-41 3.9E-46 353.0 20.1 253 415-685 6-270 (271)
65 3vhe_A Vascular endothelial gr 100.0 2.3E-42 7.9E-47 373.7 15.4 261 412-687 18-354 (359)
66 3soa_A Calcium/calmodulin-depe 100.0 2.3E-41 8E-46 374.1 23.3 254 414-682 9-268 (444)
67 2x4f_A Myosin light chain kina 100.0 1.6E-41 5.3E-46 368.2 21.4 249 419-682 92-343 (373)
68 2bdw_A Hypothetical protein K1 100.0 2E-41 6.9E-46 366.0 22.1 252 415-682 28-285 (362)
69 1fot_A TPK1 delta, CAMP-depend 100.0 4.1E-41 1.4E-45 356.7 24.1 245 415-681 5-258 (318)
70 3kfa_A Tyrosine-protein kinase 100.0 8.9E-42 3.1E-46 357.2 18.2 259 412-687 9-270 (288)
71 2pmi_A Negative RE, cyclin-dep 100.0 5.9E-41 2E-45 356.1 24.7 259 415-682 4-294 (317)
72 1k9a_A Carboxyl-terminal SRC k 100.0 1.8E-41 6.3E-46 377.3 21.5 251 414-687 191-444 (450)
73 3q4u_A Activin receptor type-1 100.0 1.6E-41 5.4E-46 357.7 19.7 258 415-685 7-299 (301)
74 3o0g_A Cell division protein k 100.0 7E-41 2.4E-45 351.3 24.4 262 416-682 2-283 (292)
75 1xjd_A Protein kinase C, theta 100.0 2.2E-41 7.6E-46 362.4 20.9 250 412-680 13-268 (345)
76 3lxl_A Tyrosine-protein kinase 100.0 3.4E-42 1.2E-46 367.4 14.3 271 415-688 22-303 (327)
77 3qup_A Tyrosine-protein kinase 100.0 8E-42 2.7E-46 363.9 17.0 263 412-690 19-300 (323)
78 2ivs_A Proto-oncogene tyrosine 100.0 1.2E-41 4.1E-46 360.9 18.2 258 414-687 21-310 (314)
79 3kex_A Receptor tyrosine-prote 100.0 1.7E-41 5.7E-46 361.7 19.4 256 415-687 12-275 (325)
80 4fr4_A YANK1, serine/threonine 100.0 3.5E-41 1.2E-45 365.3 22.1 250 415-681 14-271 (384)
81 3tki_A Serine/threonine-protei 100.0 7.9E-42 2.7E-46 363.6 16.8 253 415-682 6-262 (323)
82 1rdq_E PKA C-alpha, CAMP-depen 100.0 4.9E-41 1.7E-45 360.8 23.0 245 415-681 40-293 (350)
83 3c0i_A Peripheral plasma membr 100.0 5.3E-41 1.8E-45 361.5 23.1 253 415-682 23-287 (351)
84 4e5w_A Tyrosine-protein kinase 100.0 5.2E-42 1.8E-46 361.6 14.5 258 416-686 21-300 (302)
85 4f0f_A Serine/threonine-protei 100.0 7.9E-41 2.7E-45 349.9 23.2 254 415-685 18-286 (287)
86 1rjb_A FL cytokine receptor; k 100.0 1.7E-41 5.6E-46 364.8 18.5 260 414-688 43-334 (344)
87 4dc2_A Protein kinase C IOTA t 100.0 4.8E-41 1.6E-45 365.4 22.3 247 415-676 51-307 (396)
88 3cc6_A Protein tyrosine kinase 100.0 3.5E-41 1.2E-45 351.4 20.3 257 414-687 10-272 (281)
89 4fvq_A Tyrosine-protein kinase 100.0 2.7E-41 9.2E-46 353.8 19.3 251 415-688 7-275 (289)
90 2v62_A Serine/threonine-protei 100.0 8.5E-41 2.9E-45 359.3 23.6 262 415-687 36-327 (345)
91 2i0e_A Protein kinase C-beta I 100.0 5.2E-41 1.8E-45 360.7 21.5 249 414-681 18-276 (353)
92 3h4j_B AMPK kdaid, SNF1-like p 100.0 2.1E-41 7.3E-46 361.1 18.4 247 415-682 8-259 (336)
93 1qpc_A LCK kinase; alpha beta 100.0 3.6E-41 1.2E-45 351.0 19.6 257 414-688 11-269 (279)
94 2h8h_A Proto-oncogene tyrosine 100.0 1.4E-41 4.8E-46 386.1 17.9 259 414-690 265-525 (535)
95 3p1a_A MYT1 kinase, membrane-a 100.0 2.3E-41 7.9E-46 358.2 18.3 245 416-682 57-305 (311)
96 3og7_A AKAP9-BRAF fusion prote 100.0 6.3E-41 2.1E-45 351.1 21.2 260 414-687 22-287 (289)
97 1t46_A HOMO sapiens V-KIT hard 100.0 2E-41 6.7E-46 359.0 17.5 259 414-687 21-306 (313)
98 1mqb_A Ephrin type-A receptor 100.0 5.4E-41 1.8E-45 358.9 20.7 258 415-688 43-309 (333)
99 3g33_A Cell division protein k 100.0 4.4E-40 1.5E-44 347.9 27.5 263 414-682 7-297 (308)
100 3lzb_A Epidermal growth factor 100.0 2.9E-41 1E-45 359.9 18.4 257 415-688 14-278 (327)
101 1u5q_A Serine/threonine protei 100.0 4.4E-41 1.5E-45 361.3 19.6 248 415-683 53-307 (348)
102 3a62_A Ribosomal protein S6 ki 100.0 1.1E-40 3.7E-45 355.5 22.2 249 415-682 16-277 (327)
103 3lxp_A Non-receptor tyrosine-p 100.0 1.3E-41 4.3E-46 361.5 14.7 267 417-688 32-310 (318)
104 3uc3_A Serine/threonine-protei 100.0 3E-40 1E-44 356.8 25.7 252 415-682 19-275 (361)
105 2w4o_A Calcium/calmodulin-depe 100.0 6.5E-41 2.2E-45 360.4 20.3 252 414-682 51-306 (349)
106 1u59_A Tyrosine-protein kinase 100.0 6.5E-41 2.2E-45 350.6 19.6 254 416-686 9-270 (287)
107 2zv2_A Calcium/calmodulin-depe 100.0 4.7E-41 1.6E-45 353.6 18.6 249 415-681 12-292 (298)
108 3f3z_A Calcium/calmodulin-depe 100.0 1.7E-40 5.9E-45 345.4 22.6 250 415-681 8-261 (277)
109 2pvf_A Fibroblast growth facto 100.0 1E-40 3.4E-45 357.1 21.2 258 415-688 34-318 (334)
110 1p4o_A Insulin-like growth fac 100.0 4.8E-41 1.7E-45 357.6 18.4 261 412-688 21-299 (322)
111 3a8x_A Protein kinase C IOTA t 100.0 1.6E-40 5.5E-45 356.3 22.4 247 415-676 8-264 (345)
112 3kk8_A Calcium/calmodulin depe 100.0 2.6E-40 8.8E-45 345.3 23.3 252 415-682 5-262 (284)
113 3dbq_A Dual specificity protei 100.0 5.8E-41 2E-45 360.3 18.8 252 414-682 7-274 (343)
114 2ozo_A Tyrosine-protein kinase 100.0 7E-41 2.4E-45 385.7 20.8 254 417-687 336-597 (613)
115 2h34_A Serine/threonine-protei 100.0 2.7E-40 9.3E-45 349.7 23.2 259 415-688 33-296 (309)
116 3is5_A Calcium-dependent prote 100.0 4.2E-40 1.4E-44 344.0 24.2 249 416-681 22-278 (285)
117 2eue_A Carbon catabolite derep 100.0 3.9E-40 1.3E-44 342.4 23.8 246 416-682 13-263 (275)
118 3qd2_B Eukaryotic translation 100.0 1.1E-40 3.8E-45 356.2 20.2 250 415-682 5-326 (332)
119 2r5t_A Serine/threonine-protei 100.0 8E-41 2.7E-45 361.8 19.3 247 415-680 37-288 (373)
120 3oz6_A Mitogen-activated prote 100.0 4.2E-40 1.4E-44 359.8 24.9 259 414-682 7-329 (388)
121 3kmu_A ILK, integrin-linked ki 100.0 5.9E-41 2E-45 347.4 17.2 253 415-687 9-269 (271)
122 4ejn_A RAC-alpha serine/threon 100.0 8.9E-41 3.1E-45 371.8 19.7 249 415-682 147-405 (446)
123 3sv0_A Casein kinase I-like; t 100.0 4.1E-40 1.4E-44 367.1 25.0 261 415-690 6-280 (483)
124 3uzp_A CKI-delta, CKID, casein 100.0 3.5E-40 1.2E-44 346.5 23.0 261 415-690 8-282 (296)
125 3gni_B Strad alpha; kinase fol 100.0 2.3E-40 8E-45 362.0 22.4 262 414-682 23-334 (389)
126 3c1x_A Hepatocyte growth facto 100.0 5.4E-41 1.8E-45 363.8 17.1 257 416-688 89-355 (373)
127 3ork_A Serine/threonine protei 100.0 3.7E-41 1.3E-45 356.7 15.5 253 415-681 11-273 (311)
128 3fdn_A Serine/threonine-protei 100.0 2.7E-40 9.4E-45 344.3 21.8 248 414-682 7-258 (279)
129 2jii_A Serine/threonine-protei 100.0 1E-40 3.6E-45 359.7 19.1 261 415-690 41-338 (352)
130 2eva_A TAK1 kinase - TAB1 chim 100.0 2.4E-40 8.1E-45 349.8 21.5 254 416-690 8-265 (307)
131 3cok_A Serine/threonine-protei 100.0 2.2E-40 7.6E-45 344.8 20.9 249 415-681 10-262 (278)
132 4eut_A Serine/threonine-protei 100.0 1.2E-40 4E-45 365.0 19.7 269 415-688 8-309 (396)
133 4agu_A Cyclin-dependent kinase 100.0 2.5E-40 8.6E-45 350.3 21.6 262 416-682 3-285 (311)
134 2zmd_A Dual specificity protei 100.0 1.2E-40 4E-45 363.7 19.6 251 415-682 55-321 (390)
135 3hko_A Calcium/calmodulin-depe 100.0 1.3E-40 4.4E-45 358.0 19.6 259 411-682 21-331 (345)
136 2a2a_A Death-associated protei 100.0 3.3E-40 1.1E-44 351.1 22.1 252 415-682 11-273 (321)
137 4hgt_A Casein kinase I isoform 100.0 3.3E-40 1.1E-44 346.5 21.7 264 414-689 7-281 (296)
138 2y94_A 5'-AMP-activated protei 100.0 5.9E-40 2E-44 365.2 24.7 247 415-681 15-266 (476)
139 3pls_A Macrophage-stimulating 100.0 1.5E-40 5.2E-45 349.6 18.8 256 417-688 22-287 (298)
140 3mtl_A Cell division protein k 100.0 1.5E-40 5E-45 354.2 18.8 262 416-682 2-282 (324)
141 1ua2_A CAK, cell division prot 100.0 2.7E-40 9.4E-45 355.5 21.1 267 411-682 5-292 (346)
142 2wqm_A Serine/threonine-protei 100.0 5E-40 1.7E-44 347.8 22.6 259 416-688 32-297 (310)
143 3f66_A Hepatocyte growth facto 100.0 1.9E-40 6.3E-45 349.0 19.1 258 415-688 24-291 (298)
144 2ac3_A MAP kinase-interacting 100.0 8.3E-40 2.8E-44 347.1 24.0 256 416-682 12-296 (316)
145 2i1m_A Macrophage colony-stimu 100.0 9.7E-41 3.3E-45 357.1 16.9 259 413-686 43-324 (333)
146 1fvr_A Tyrosine-protein kinase 100.0 4.7E-40 1.6E-44 350.9 21.9 255 416-688 25-300 (327)
147 3dls_A PAS domain-containing s 100.0 3.1E-40 1E-44 353.1 20.4 243 414-682 22-275 (335)
148 2acx_A G protein-coupled recep 100.0 2.6E-40 8.9E-45 372.9 20.8 253 413-681 181-444 (576)
149 3kn6_A Ribosomal protein S6 ki 100.0 1.8E-40 6E-45 353.5 18.3 247 421-682 16-271 (325)
150 2yfx_A Tyrosine-protein kinase 100.0 1.3E-40 4.5E-45 355.1 17.4 258 415-688 29-304 (327)
151 3brb_A Proto-oncogene tyrosine 100.0 2.3E-40 7.9E-45 350.9 19.2 261 412-688 30-308 (313)
152 3mi9_A Cell division protein k 100.0 1.7E-39 5.7E-44 350.2 26.1 264 415-682 16-312 (351)
153 1xbb_A Tyrosine-protein kinase 100.0 3.2E-40 1.1E-44 346.0 19.7 254 415-686 15-277 (291)
154 2w1i_A JAK2; chromosomal rearr 100.0 2.4E-40 8.2E-45 352.9 19.1 266 415-687 40-321 (326)
155 2qr7_A Ribosomal protein S6 ki 100.0 5E-40 1.7E-44 352.0 21.4 253 414-682 20-278 (342)
156 3llt_A Serine/threonine kinase 100.0 2.1E-39 7.2E-44 350.7 26.5 260 413-681 32-355 (360)
157 3ttj_A Mitogen-activated prote 100.0 5.6E-40 1.9E-44 366.0 22.5 259 415-682 61-356 (464)
158 1vzo_A Ribosomal protein S6 ki 100.0 2.2E-40 7.6E-45 357.2 18.5 254 415-683 53-323 (355)
159 3e7e_A HBUB1, BUB1A, mitotic c 100.0 8.2E-40 2.8E-44 354.5 23.0 253 412-688 61-339 (365)
160 2xir_A Vascular endothelial gr 100.0 1.2E-40 4E-45 353.6 15.9 260 413-687 24-309 (316)
161 2buj_A Serine/threonine-protei 100.0 2.7E-40 9.3E-45 351.0 18.8 259 415-687 28-305 (317)
162 3mdy_A Bone morphogenetic prot 100.0 6.1E-40 2.1E-44 351.4 21.6 264 414-688 35-331 (337)
163 2vwi_A Serine/threonine-protei 100.0 2.5E-40 8.6E-45 348.7 18.2 260 414-682 13-288 (303)
164 1nxk_A MAP kinase-activated pr 100.0 6E-40 2E-44 359.2 21.6 251 416-682 61-322 (400)
165 3gbz_A Kinase, CMGC CDK; ssgci 100.0 4.4E-40 1.5E-44 351.3 20.0 261 415-681 33-318 (329)
166 3bhy_A Death-associated protei 100.0 8.7E-40 3E-44 341.2 21.7 250 416-681 5-265 (283)
167 4aaa_A Cyclin-dependent kinase 100.0 3.4E-40 1.2E-44 352.5 18.9 263 415-682 24-307 (331)
168 3gxj_A TGF-beta receptor type- 100.0 1.5E-41 5.2E-46 358.1 8.3 259 416-688 3-297 (303)
169 1byg_A CSK, protein (C-termina 100.0 3.8E-40 1.3E-44 343.0 18.8 250 415-687 20-272 (278)
170 2clq_A Mitogen-activated prote 100.0 2.3E-39 7.7E-44 340.1 24.4 252 416-682 22-279 (295)
171 2y7j_A Phosphorylase B kinase 100.0 1.6E-39 5.3E-44 351.9 23.9 256 411-682 89-360 (365)
172 1u46_A ACK-1, activated CDC42 100.0 2.5E-40 8.7E-45 346.6 17.1 256 415-686 17-282 (291)
173 3c4z_A Rhodopsin kinase; Ser/T 100.0 8.5E-40 2.9E-44 368.0 22.4 248 414-676 183-438 (543)
174 4fl3_A Tyrosine-protein kinase 100.0 3.2E-40 1.1E-44 381.1 19.4 247 422-686 375-629 (635)
175 2j7t_A Serine/threonine-protei 100.0 6.3E-40 2.2E-44 345.6 19.7 254 414-682 17-276 (302)
176 2a19_B Interferon-induced, dou 100.0 8.6E-40 2.9E-44 341.2 20.4 248 414-688 9-274 (284)
177 1cm8_A Phosphorylated MAP kina 100.0 1.1E-39 3.9E-44 353.1 21.9 261 415-686 24-314 (367)
178 2jam_A Calcium/calmodulin-depe 100.0 7.7E-40 2.6E-44 345.4 20.1 251 415-682 8-262 (304)
179 3pg1_A Mitogen-activated prote 100.0 4.9E-40 1.7E-44 355.9 19.0 269 408-682 14-317 (362)
180 3g2f_A Bone morphogenetic prot 100.0 8.4E-40 2.9E-44 350.3 20.1 264 415-690 12-320 (336)
181 2rku_A Serine/threonine-protei 100.0 2.8E-39 9.6E-44 339.4 23.7 249 415-682 14-266 (294)
182 3eqc_A Dual specificity mitoge 100.0 1.2E-39 4E-44 352.7 21.2 261 415-682 32-325 (360)
183 2w5a_A Serine/threonine-protei 100.0 1.2E-39 4.3E-44 339.2 20.7 257 415-685 5-271 (279)
184 3mwu_A Calmodulin-domain prote 100.0 1.6E-39 5.5E-44 365.8 23.1 251 415-682 21-277 (486)
185 2vgo_A Serine/threonine-protei 100.0 3.2E-39 1.1E-43 337.1 23.8 246 415-681 13-262 (284)
186 2owb_A Serine/threonine-protei 100.0 2.2E-39 7.6E-44 346.7 23.1 248 415-681 40-291 (335)
187 3com_A Serine/threonine-protei 100.0 3.4E-39 1.2E-43 342.1 24.3 251 414-681 27-278 (314)
188 3eb0_A Putative uncharacterize 100.0 1.3E-39 4.3E-44 355.3 21.5 260 412-681 3-321 (383)
189 3lij_A Calcium/calmodulin depe 100.0 2.1E-39 7.1E-44 365.5 23.9 251 415-682 36-292 (494)
190 3a7i_A MST3 kinase, serine/thr 100.0 3.7E-39 1.2E-43 340.0 24.2 249 415-682 21-271 (303)
191 1x8b_A WEE1HU, WEE1-like prote 100.0 2.8E-39 9.6E-44 337.9 23.1 245 414-682 9-280 (289)
192 3lm5_A Serine/threonine-protei 100.0 7.4E-40 2.5E-44 349.2 18.2 257 411-682 23-288 (327)
193 3byv_A Rhoptry kinase; malaria 100.0 1.2E-40 4.2E-45 362.5 12.1 241 414-681 71-359 (377)
194 3rp9_A Mitogen-activated prote 100.0 3.8E-39 1.3E-43 360.2 24.2 193 415-612 52-279 (458)
195 3nyv_A Calmodulin-domain prote 100.0 1.1E-39 3.7E-44 367.2 19.9 251 415-682 25-282 (484)
196 3q5i_A Protein kinase; CDPK, m 100.0 3.8E-39 1.3E-43 364.3 24.4 251 415-682 35-302 (504)
197 3i6u_A CDS1, serine/threonine- 100.0 5.3E-40 1.8E-44 362.1 16.8 254 413-682 132-400 (419)
198 2r3i_A Cell division protein k 100.0 4.6E-39 1.6E-43 338.5 23.1 261 416-681 3-283 (299)
199 2j0j_A Focal adhesion kinase 1 100.0 9.7E-40 3.3E-44 378.5 19.5 257 414-687 388-650 (656)
200 1b6c_B TGF-B superfamily recep 100.0 2.4E-39 8.1E-44 347.6 21.2 263 413-688 39-336 (342)
201 3ll6_A Cyclin G-associated kin 100.0 5.8E-40 2E-44 351.4 16.3 260 414-691 26-311 (337)
202 2yex_A Serine/threonine-protei 100.0 6.6E-40 2.3E-44 340.7 16.2 253 415-682 6-262 (276)
203 3pfq_A PKC-B, PKC-beta, protei 100.0 2.2E-39 7.7E-44 376.6 22.4 250 413-681 338-597 (674)
204 3fme_A Dual specificity mitoge 100.0 8.2E-40 2.8E-44 342.6 15.8 251 414-681 5-266 (290)
205 3nsz_A CK II alpha, casein kin 100.0 4E-39 1.4E-43 344.1 21.4 256 415-682 35-320 (330)
206 2h6d_A 5'-AMP-activated protei 100.0 3.9E-39 1.3E-43 334.9 20.7 248 415-682 10-262 (276)
207 3n9x_A Phosphotransferase; mal 100.0 4.6E-39 1.6E-43 356.2 22.4 198 415-617 25-252 (432)
208 1phk_A Phosphorylase kinase; g 100.0 6.7E-39 2.3E-43 337.1 22.4 252 414-681 15-283 (298)
209 3q60_A ROP5B; pseudokinase, tr 100.0 6.2E-40 2.1E-44 356.2 14.8 254 415-681 61-352 (371)
210 3kvw_A DYRK2, dual specificity 100.0 1.1E-38 3.8E-43 352.4 24.9 202 415-625 96-307 (429)
211 1t4h_A Serine/threonine-protei 100.0 8.5E-39 2.9E-43 335.0 22.5 250 416-682 26-283 (290)
212 2y4i_B KSR2, HKSR2, kinase sup 100.0 1.6E-39 5.5E-44 345.4 16.7 258 413-688 30-302 (319)
213 3qyz_A Mitogen-activated prote 100.0 4.5E-39 1.5E-43 348.5 20.4 262 415-682 26-314 (364)
214 1blx_A Cyclin-dependent kinase 100.0 7.6E-39 2.6E-43 341.2 21.7 263 413-681 8-296 (326)
215 2x7f_A TRAF2 and NCK-interacti 100.0 2.9E-39 9.9E-44 344.5 18.4 255 411-682 19-287 (326)
216 2ycf_A Serine/threonine-protei 100.0 3.4E-39 1.2E-43 343.4 18.8 252 414-682 8-275 (322)
217 2fst_X Mitogen-activated prote 100.0 3.8E-39 1.3E-43 348.7 19.5 258 415-682 28-312 (367)
218 2xrw_A Mitogen-activated prote 100.0 6.8E-39 2.3E-43 347.9 21.5 257 415-682 24-319 (371)
219 1j1b_A Glycogen synthase kinas 100.0 5.5E-39 1.9E-43 354.1 20.9 257 416-682 54-337 (420)
220 4e7w_A Glycogen synthase kinas 100.0 2.9E-39 9.9E-44 353.4 18.4 259 415-682 39-322 (394)
221 3an0_A Dual specificity mitoge 100.0 1.2E-39 4.2E-44 349.6 14.8 251 413-681 48-310 (340)
222 1zy4_A Serine/threonine-protei 100.0 6.8E-39 2.3E-43 337.6 20.1 252 415-682 5-284 (303)
223 1wak_A Serine/threonine-protei 100.0 5.6E-39 1.9E-43 352.0 20.0 259 415-682 36-392 (397)
224 2wtk_C Serine/threonine-protei 100.0 3.5E-38 1.2E-42 332.8 24.8 250 415-682 4-264 (305)
225 2b9h_A MAP kinase FUS3, mitoge 100.0 3.1E-38 1.1E-42 340.5 23.8 262 415-682 10-306 (353)
226 2wei_A Calmodulin-domain prote 100.0 2.2E-38 7.4E-43 331.4 21.7 251 414-681 20-276 (287)
227 3e3p_A Protein kinase, putativ 100.0 1.9E-38 6.4E-43 343.2 22.0 265 411-682 18-315 (360)
228 2i6l_A Mitogen-activated prote 100.0 2.2E-38 7.7E-43 336.4 21.8 262 415-682 10-306 (320)
229 3rgf_A Cyclin-dependent kinase 100.0 3.1E-39 1.1E-43 354.9 15.6 199 416-620 20-239 (405)
230 2pml_X PFPK7, Ser/Thr protein 100.0 4.2E-39 1.4E-43 346.6 16.0 256 415-682 30-323 (348)
231 1z57_A Dual specificity protei 100.0 4.7E-38 1.6E-42 336.8 24.0 259 415-682 13-329 (339)
232 2vx3_A Dual specificity tyrosi 100.0 7.4E-38 2.5E-42 341.2 25.7 261 414-681 52-372 (382)
233 3cek_A Dual specificity protei 100.0 5.6E-39 1.9E-43 340.3 15.9 255 411-682 23-293 (313)
234 4exu_A Mitogen-activated prote 100.0 2.9E-38 9.8E-43 343.0 21.0 257 415-682 41-324 (371)
235 2eu9_A Dual specificity protei 100.0 1.3E-37 4.3E-42 335.8 23.1 258 415-681 18-333 (355)
236 2dyl_A Dual specificity mitoge 100.0 8.3E-38 2.8E-42 331.9 20.8 251 415-682 24-284 (318)
237 3aln_A Dual specificity mitoge 100.0 4E-38 1.4E-42 335.9 18.1 254 415-682 21-286 (327)
238 1q8y_A SR protein kinase; tran 100.0 3.6E-38 1.2E-42 342.7 18.0 259 415-682 18-334 (373)
239 3coi_A Mitogen-activated prote 100.0 5.3E-38 1.8E-42 338.7 18.7 257 415-682 23-306 (353)
240 3a99_A Proto-oncogene serine/t 100.0 2E-38 7E-43 337.0 14.9 242 414-682 41-294 (320)
241 3fhr_A MAP kinase-activated pr 100.0 4.9E-38 1.7E-42 336.3 17.4 251 415-682 27-288 (336)
242 2iwi_A Serine/threonine-protei 100.0 3.2E-38 1.1E-42 334.3 15.7 244 412-682 27-284 (312)
243 2rio_A Serine/threonine-protei 100.0 1.6E-37 5.4E-42 343.9 21.1 251 416-682 15-296 (434)
244 3p23_A Serine/threonine-protei 100.0 1.4E-37 4.9E-42 343.3 20.1 250 414-681 22-283 (432)
245 3qa8_A MGC80376 protein; kinas 100.0 1E-37 3.5E-42 354.9 12.4 258 415-679 13-295 (676)
246 3rgz_A Protein brassinosteroid 100.0 4.8E-36 1.6E-40 356.2 22.7 278 18-295 369-722 (768)
247 3uqc_A Probable conserved tran 100.0 2.3E-36 7.7E-41 315.5 16.5 229 416-688 31-265 (286)
248 3dzo_A Rhoptry kinase domain; 100.0 2.1E-36 7.3E-41 332.6 16.6 242 413-681 75-363 (413)
249 2pzi_A Probable serine/threoni 100.0 2.2E-36 7.5E-41 353.8 15.9 238 415-685 79-325 (681)
250 3m2w_A MAP kinase-activated pr 100.0 4.3E-35 1.5E-39 308.2 22.3 226 416-682 17-257 (299)
251 3rgz_A Protein brassinosteroid 100.0 2.7E-35 9.2E-40 349.7 22.8 278 16-293 393-743 (768)
252 2vuw_A Serine/threonine-protei 100.0 3.6E-36 1.2E-40 322.1 5.3 242 415-680 19-329 (336)
253 1ogq_A PGIP-2, polygalacturona 100.0 9.7E-34 3.3E-38 299.6 17.2 256 41-298 50-312 (313)
254 2id5_A Lingo-1, leucine rich r 100.0 4.7E-33 1.6E-37 312.7 23.3 303 17-319 32-338 (477)
255 1ogq_A PGIP-2, polygalacturona 100.0 1E-33 3.5E-38 299.5 15.6 252 17-270 50-306 (313)
256 3v47_A TOLL-like receptor 5B a 100.0 2.5E-33 8.5E-38 313.0 19.1 301 17-317 30-411 (455)
257 3v47_A TOLL-like receptor 5B a 100.0 3.3E-33 1.1E-37 312.0 17.9 284 11-294 48-412 (455)
258 2id5_A Lingo-1, leucine rich r 100.0 1.3E-32 4.4E-37 309.2 20.3 284 11-294 50-337 (477)
259 3t6q_A CD180 antigen; protein- 100.0 5.1E-31 1.7E-35 305.3 24.9 300 18-319 255-565 (606)
260 3t6q_A CD180 antigen; protein- 100.0 4.2E-31 1.4E-35 306.0 21.4 281 12-294 273-564 (606)
261 3vq2_A TLR4, TOLL-like recepto 100.0 7.3E-31 2.5E-35 304.0 22.2 116 12-127 51-168 (606)
262 4eco_A Uncharacterized protein 100.0 4.5E-31 1.5E-35 306.4 20.3 295 11-315 267-601 (636)
263 4eco_A Uncharacterized protein 100.0 2.9E-31 9.8E-36 308.0 18.6 289 11-305 241-570 (636)
264 4ecn_A Leucine-rich repeat pro 100.0 3.6E-30 1.2E-34 304.1 21.5 266 13-286 487-785 (876)
265 2z7x_B TOLL-like receptor 1, v 100.0 3.7E-30 1.3E-34 292.4 20.6 157 158-317 322-484 (520)
266 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-29 4E-34 291.0 23.9 296 17-318 52-514 (562)
267 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-29 3.7E-34 304.7 24.2 278 17-294 24-355 (844)
268 4ecn_A Leucine-rich repeat pro 100.0 4.7E-30 1.6E-34 303.2 20.3 287 11-306 442-781 (876)
269 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-29 1.2E-33 294.0 26.6 306 13-318 242-626 (680)
270 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-29 5.1E-34 303.5 23.7 284 10-293 41-378 (844)
271 2z63_A TOLL-like receptor 4, v 100.0 9.8E-30 3.4E-34 292.3 21.0 304 12-316 47-533 (570)
272 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-29 6.6E-34 288.5 21.8 304 11-317 44-513 (549)
273 1xku_A Decorin; proteoglycan, 100.0 1.1E-28 3.8E-33 263.1 26.1 268 14-291 28-307 (330)
274 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-29 4.3E-34 293.7 20.3 142 17-158 32-175 (606)
275 3o6n_A APL1; leucine-rich repe 100.0 4.6E-29 1.6E-33 272.5 22.8 287 16-315 44-353 (390)
276 1xku_A Decorin; proteoglycan, 100.0 8.3E-29 2.8E-33 264.1 24.2 265 17-288 52-330 (330)
277 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-29 5.6E-34 287.0 19.8 268 17-291 21-413 (520)
278 2z66_A Variable lymphocyte rec 100.0 2.1E-29 7.3E-34 265.6 18.9 273 18-294 8-291 (306)
279 2ft3_A Biglycan; proteoglycan, 100.0 9.3E-29 3.2E-33 263.9 23.7 264 16-290 32-307 (332)
280 3oja_B Anopheles plasmodium-re 100.0 4.5E-29 1.5E-33 287.8 22.7 288 16-316 50-360 (597)
281 1ziw_A TOLL-like receptor 3; i 100.0 9E-29 3.1E-33 290.5 25.6 283 12-294 324-626 (680)
282 4g8a_A TOLL-like receptor 4; l 100.0 7.9E-29 2.7E-33 288.3 24.9 306 17-322 52-588 (635)
283 3o6n_A APL1; leucine-rich repe 100.0 2.4E-29 8.4E-34 274.7 19.3 271 12-293 64-355 (390)
284 3oja_B Anopheles plasmodium-re 100.0 2.2E-29 7.4E-34 290.5 19.3 271 12-293 70-361 (597)
285 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.4E-29 1.5E-33 286.2 21.8 270 14-292 28-443 (562)
286 2ft3_A Biglycan; proteoglycan, 100.0 9.3E-29 3.2E-33 263.9 22.1 264 17-288 54-331 (332)
287 2z63_A TOLL-like receptor 4, v 100.0 6.5E-29 2.2E-33 285.4 20.6 183 113-296 348-537 (570)
288 4azs_A Methyltransferase WBDD; 100.0 2.9E-30 9.9E-35 293.6 8.1 186 422-616 240-437 (569)
289 3oja_A Leucine-rich immune mol 100.0 2.9E-31 9.9E-36 297.7 -2.6 234 23-269 16-251 (487)
290 4g8a_A TOLL-like receptor 4; l 100.0 3.7E-28 1.3E-32 282.6 22.0 284 11-294 70-584 (635)
291 3zyi_A Leucine-rich repeat-con 100.0 6.2E-28 2.1E-32 268.9 22.4 249 20-273 57-308 (452)
292 3zyj_A Leucine-rich repeat-con 100.0 7.2E-28 2.5E-32 267.4 22.2 249 20-273 46-297 (440)
293 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-28 6.3E-33 280.3 17.1 145 17-161 26-173 (549)
294 2z80_A TOLL-like receptor 2, v 100.0 2E-28 6.9E-33 263.6 14.9 274 16-293 30-317 (353)
295 4fcg_A Uncharacterized protein 100.0 1.3E-27 4.3E-32 254.3 20.7 224 40-268 80-314 (328)
296 2z80_A TOLL-like receptor 2, v 100.0 8.3E-29 2.8E-33 266.7 11.6 256 17-272 52-318 (353)
297 3zyi_A Leucine-rich repeat-con 100.0 1.8E-27 6.3E-32 265.0 22.7 249 42-294 55-307 (452)
298 4fmz_A Internalin; leucine ric 100.0 1.5E-27 5E-32 256.3 20.3 266 11-294 60-328 (347)
299 3zyj_A Leucine-rich repeat-con 100.0 3E-27 1E-31 262.4 23.0 249 42-294 44-296 (440)
300 1ozn_A Reticulon 4 receptor; N 100.0 1E-27 3.6E-32 250.0 17.2 250 20-295 14-266 (285)
301 4fmz_A Internalin; leucine ric 100.0 7.1E-27 2.4E-31 250.9 24.0 283 9-311 36-321 (347)
302 4fcg_A Uncharacterized protein 99.9 2.2E-27 7.4E-32 252.5 19.5 223 17-244 81-314 (328)
303 1wwl_A Monocyte differentiatio 99.9 8.1E-29 2.8E-33 261.9 7.8 248 37-292 39-311 (312)
304 2z66_A Variable lymphocyte rec 99.9 2.1E-27 7.1E-32 250.4 17.9 246 44-293 10-264 (306)
305 1ozn_A Reticulon 4 receptor; N 99.9 9.8E-28 3.3E-32 250.2 14.5 236 16-275 31-268 (285)
306 1wwl_A Monocyte differentiatio 99.9 1E-28 3.6E-33 261.0 6.5 253 7-269 33-310 (312)
307 1o6v_A Internalin A; bacterial 99.9 1.9E-26 6.4E-31 257.9 25.0 263 12-292 63-346 (466)
308 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-28 6.4E-33 259.6 5.8 258 17-287 10-272 (317)
309 1o6v_A Internalin A; bacterial 99.9 2.4E-26 8.3E-31 257.0 22.8 265 13-294 86-370 (466)
310 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-26 1.1E-30 254.2 22.8 257 10-291 35-300 (457)
311 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-25 3.7E-30 250.1 20.7 257 12-292 59-333 (457)
312 3en9_A Glycoprotease, O-sialog 99.9 9E-27 3.1E-31 263.4 8.6 184 419-617 339-538 (540)
313 2z62_A TOLL-like receptor 4, v 99.9 3.8E-25 1.3E-29 229.4 18.9 228 22-272 12-241 (276)
314 2z62_A TOLL-like receptor 4, v 99.9 5.3E-25 1.8E-29 228.3 19.6 206 88-294 28-241 (276)
315 3oja_A Leucine-rich immune mol 99.9 1.8E-26 6E-31 258.8 8.1 236 15-263 32-270 (487)
316 3o53_A Protein LRIM1, AGAP0063 99.9 7.9E-27 2.7E-31 247.2 4.6 247 13-272 30-280 (317)
317 2o6q_A Variable lymphocyte rec 99.9 6.8E-24 2.3E-28 219.2 22.8 205 42-272 17-222 (270)
318 1jl5_A Outer protein YOPM; leu 99.9 2.5E-24 8.5E-29 239.0 20.3 248 13-291 30-291 (454)
319 1jl5_A Outer protein YOPM; leu 99.9 1.1E-23 3.8E-28 233.7 23.3 222 41-291 131-371 (454)
320 1p9a_G Platelet glycoprotein I 99.9 8.7E-24 3E-28 220.4 20.5 205 37-271 6-211 (290)
321 3rfs_A Internalin B, repeat mo 99.9 1.9E-24 6.4E-29 223.6 14.3 219 17-292 19-237 (272)
322 1p9a_G Platelet glycoprotein I 99.9 2.2E-23 7.5E-28 217.4 20.1 203 84-293 6-211 (290)
323 2o6q_A Variable lymphocyte rec 99.9 4.5E-23 1.5E-27 213.0 21.9 199 69-293 21-221 (270)
324 3rfs_A Internalin B, repeat mo 99.9 1E-23 3.5E-28 218.0 16.1 197 69-294 24-222 (272)
325 3g06_A SSPH2 (leucine-rich rep 99.9 8.6E-23 2.9E-27 233.6 24.5 233 18-290 41-274 (622)
326 1z7x_W Ribonuclease inhibitor; 99.9 4.1E-26 1.4E-30 254.9 -5.2 207 84-290 166-411 (461)
327 3m19_A Variable lymphocyte rec 99.9 4.4E-23 1.5E-27 210.6 17.7 204 69-298 19-229 (251)
328 2xwt_C Thyrotropin receptor; s 99.9 8.3E-23 2.8E-27 206.9 15.6 206 28-265 22-236 (239)
329 1zar_A RIO2 kinase; serine kin 99.9 1.3E-23 4.4E-28 217.8 9.2 151 411-591 85-253 (282)
330 2xwt_C Thyrotropin receptor; s 99.9 1.4E-22 4.8E-27 205.3 15.9 205 77-288 23-237 (239)
331 3goz_A Leucine-rich repeat-con 99.9 2.1E-24 7.2E-29 232.9 2.6 249 22-270 3-299 (362)
332 4glp_A Monocyte differentiatio 99.9 8.3E-23 2.8E-27 215.5 14.0 204 86-292 89-309 (310)
333 1z7x_W Ribonuclease inhibitor; 99.9 2E-25 6.8E-30 249.4 -6.8 280 13-292 24-356 (461)
334 4glp_A Monocyte differentiatio 99.9 5.4E-23 1.8E-27 216.9 12.1 223 41-269 64-308 (310)
335 3g06_A SSPH2 (leucine-rich rep 99.9 8.2E-22 2.8E-26 225.5 20.2 240 17-296 61-303 (622)
336 1h6u_A Internalin H; cell adhe 99.9 2.6E-22 9.1E-27 211.2 14.8 213 16-269 18-231 (308)
337 2ca6_A RAN GTPase-activating p 99.9 2.6E-24 8.8E-29 234.5 -1.0 251 20-293 7-319 (386)
338 3m19_A Variable lymphocyte rec 99.9 8.7E-22 3E-26 201.0 16.5 179 18-199 15-194 (251)
339 2ast_B S-phase kinase-associat 99.9 2.5E-23 8.6E-28 222.1 4.5 251 43-298 49-314 (336)
340 3goz_A Leucine-rich repeat-con 99.9 1.9E-23 6.5E-28 225.4 3.4 248 45-292 2-299 (362)
341 2ca6_A RAN GTPase-activating p 99.9 1.4E-23 4.7E-28 228.7 0.3 213 79-291 23-288 (386)
342 1h6u_A Internalin H; cell adhe 99.9 2.4E-21 8.3E-26 203.9 15.1 209 69-293 24-233 (308)
343 4ay9_X Follicle-stimulating ho 99.9 3.9E-21 1.3E-25 206.3 16.2 238 20-286 12-255 (350)
344 4ay9_X Follicle-stimulating ho 99.8 7.8E-21 2.7E-25 203.9 16.1 182 17-199 30-217 (350)
345 3cvr_A Invasion plasmid antige 99.8 9.8E-21 3.3E-25 214.0 14.0 190 42-275 60-250 (571)
346 2ast_B S-phase kinase-associat 99.8 6.8E-22 2.3E-26 211.0 4.0 251 17-275 47-313 (336)
347 2o6s_A Variable lymphocyte rec 99.8 4.3E-20 1.5E-24 182.6 14.7 151 18-194 8-158 (208)
348 3cvr_A Invasion plasmid antige 99.8 7.7E-20 2.6E-24 206.6 17.5 184 89-299 60-252 (571)
349 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 178.9 14.5 174 69-275 12-185 (208)
350 2v70_A SLIT-2, SLIT homolog 2 99.8 2.9E-19 9.8E-24 178.2 15.2 157 91-273 14-171 (220)
351 2v9t_B SLIT homolog 2 protein 99.8 4.5E-19 1.5E-23 176.8 15.6 156 91-272 14-169 (220)
352 1h6t_A Internalin B; cell adhe 99.8 2E-19 6.8E-24 187.5 11.4 193 15-269 22-214 (291)
353 3e6j_A Variable lymphocyte rec 99.8 2E-18 6.7E-23 173.3 18.1 156 90-272 21-176 (229)
354 1h6t_A Internalin B; cell adhe 99.8 5.6E-19 1.9E-23 184.1 14.5 187 69-293 29-216 (291)
355 2xot_A Amphoterin-induced prot 99.8 2.8E-19 9.7E-24 192.5 12.2 179 68-272 22-206 (361)
356 3ogk_B Coronatine-insensitive 99.8 6.8E-21 2.3E-25 219.6 -1.4 137 157-293 375-529 (592)
357 1zth_A RIO1 serine protein kin 99.8 5.5E-20 1.9E-24 188.2 5.2 137 417-566 48-219 (258)
358 1m9s_A Internalin B; cell inva 99.8 4.6E-19 1.6E-23 202.5 13.2 192 14-221 18-211 (605)
359 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-18 4.4E-23 173.4 14.5 151 19-194 13-163 (220)
360 1m9s_A Internalin B; cell inva 99.8 7.6E-19 2.6E-23 200.7 14.5 185 69-269 26-211 (605)
361 2xot_A Amphoterin-induced prot 99.8 6.4E-19 2.2E-23 189.8 12.6 175 20-220 21-202 (361)
362 2v9t_B SLIT homolog 2 protein 99.8 1.9E-18 6.4E-23 172.3 15.1 150 20-195 14-163 (220)
363 3e6j_A Variable lymphocyte rec 99.8 5E-18 1.7E-22 170.3 15.9 156 14-173 16-172 (229)
364 4b8c_D Glucose-repressible alc 99.8 2E-19 6.8E-24 210.7 6.4 190 41-241 173-369 (727)
365 1dce_A Protein (RAB geranylger 99.7 2.7E-20 9.1E-25 211.5 -4.9 189 38-272 346-550 (567)
366 4ezg_A Putative uncharacterize 99.7 6.9E-18 2.4E-22 165.1 12.3 157 83-269 39-195 (197)
367 1xeu_A Internalin C; cellular 99.7 2.8E-18 9.6E-23 176.0 8.7 169 14-197 16-185 (263)
368 1dce_A Protein (RAB geranylger 99.7 9.5E-20 3.3E-24 207.0 -3.2 187 85-294 346-550 (567)
369 1xeu_A Internalin C; cellular 99.7 4.4E-18 1.5E-22 174.5 9.1 164 69-270 24-187 (263)
370 4ezg_A Putative uncharacterize 99.7 2.8E-17 9.7E-22 160.8 12.7 151 38-196 41-193 (197)
371 1w8a_A SLIT protein; signaling 99.7 1.9E-17 6.6E-22 161.2 9.4 81 91-174 11-92 (192)
372 1w8a_A SLIT protein; signaling 99.7 4.6E-17 1.6E-21 158.5 10.6 153 115-293 11-165 (192)
373 4b8c_D Glucose-repressible alc 99.7 7E-18 2.4E-22 197.6 4.9 190 17-217 173-369 (727)
374 3ogk_B Coronatine-insensitive 99.7 2.9E-18 9.9E-23 197.6 0.1 276 14-291 70-392 (592)
375 4gyi_A RIO2 kinase; protein ki 99.7 2.5E-17 8.4E-22 174.8 3.9 137 417-565 96-264 (397)
376 2p1m_B Transport inhibitor res 99.6 1.1E-17 3.8E-22 192.7 -0.4 179 110-290 287-494 (594)
377 2ell_A Acidic leucine-rich nuc 99.6 6.8E-16 2.3E-20 146.7 11.6 85 88-174 24-109 (168)
378 2ell_A Acidic leucine-rich nuc 99.6 7.3E-16 2.5E-20 146.5 11.8 133 41-198 24-161 (168)
379 2wfh_A SLIT homolog 2 protein 99.6 1.7E-15 5.7E-20 147.4 12.7 93 81-173 47-139 (193)
380 2wfh_A SLIT homolog 2 protein 99.6 2.3E-15 7.8E-20 146.5 13.5 130 116-272 14-143 (193)
381 2je0_A Acidic leucine-rich nuc 99.6 9.8E-16 3.3E-20 142.5 8.3 84 88-173 17-101 (149)
382 2p1m_B Transport inhibitor res 99.6 4.6E-17 1.6E-21 187.6 -1.1 278 14-293 102-472 (594)
383 3sb4_A Hypothetical leucine ri 99.6 2.7E-15 9.4E-20 159.2 12.5 235 17-261 25-327 (329)
384 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 142.1 8.1 111 80-192 34-148 (149)
385 2o6r_A Variable lymphocyte rec 99.6 6.9E-15 2.3E-19 141.0 13.3 114 136-272 28-141 (177)
386 2o6r_A Variable lymphocyte rec 99.6 8.9E-15 3E-19 140.3 12.5 130 19-174 9-138 (177)
387 4fdw_A Leucine rich hypothetic 99.6 5E-14 1.7E-18 153.0 18.9 263 14-288 110-381 (401)
388 4fdw_A Leucine rich hypothetic 99.6 1E-13 3.6E-18 150.4 20.3 244 39-294 111-362 (401)
389 1ds9_A Outer arm dynein; leuci 99.5 8.8E-17 3E-21 157.4 -4.7 150 13-190 14-180 (198)
390 1ds9_A Outer arm dynein; leuci 99.5 8.6E-17 2.9E-21 157.5 -5.8 155 84-268 14-185 (198)
391 1a9n_A U2A', U2A'; complex (nu 99.5 9.9E-15 3.4E-19 139.8 8.1 86 84-173 15-101 (176)
392 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5.2E-19 138.5 8.5 132 37-196 15-152 (176)
393 3sb4_A Hypothetical leucine ri 99.5 2.1E-14 7.3E-19 152.3 9.0 214 16-238 48-328 (329)
394 3g39_A Variable lymphocyte rec 99.4 3.1E-13 1.1E-17 128.4 11.3 86 88-173 30-115 (170)
395 3g39_A Variable lymphocyte rec 99.4 2.9E-13 9.8E-18 128.7 10.6 106 89-197 10-115 (170)
396 2r9u_A Variable lymphocyte rec 99.4 4.8E-13 1.6E-17 127.6 11.3 86 88-173 33-118 (174)
397 2r9u_A Variable lymphocyte rec 99.4 5.3E-13 1.8E-17 127.3 11.1 106 90-198 14-119 (174)
398 3tm0_A Aminoglycoside 3'-phosp 99.3 5.9E-12 2E-16 128.8 12.7 144 414-564 12-212 (263)
399 2ifg_A High affinity nerve gro 99.3 1.2E-11 4.1E-16 132.0 10.8 102 69-173 13-116 (347)
400 2ifg_A High affinity nerve gro 99.2 1.5E-11 5.2E-16 131.3 10.7 105 91-198 11-117 (347)
401 3un9_A NLR family member X1; l 99.2 2.2E-13 7.5E-18 146.4 -4.1 157 88-244 101-283 (372)
402 1nd4_A Aminoglycoside 3'-phosp 99.2 1.5E-11 5.2E-16 125.4 8.0 136 417-564 21-213 (264)
403 4fs7_A Uncharacterized protein 99.2 3.1E-10 1E-14 123.3 17.8 244 12-265 66-353 (394)
404 3un9_A NLR family member X1; l 99.2 4.5E-13 1.5E-17 144.0 -5.3 180 41-220 72-283 (372)
405 4gt6_A Cell surface protein; l 99.0 1E-08 3.5E-13 111.3 21.2 265 13-287 59-367 (394)
406 3dxp_A Putative acyl-COA dehyd 99.0 4.5E-10 1.5E-14 120.3 9.7 142 420-565 42-248 (359)
407 4gt6_A Cell surface protein; l 99.0 5.6E-09 1.9E-13 113.3 17.4 249 12-268 82-370 (394)
408 3sg8_A APH(2'')-ID; antibiotic 99.0 2.2E-10 7.4E-15 119.8 5.9 185 421-617 25-287 (304)
409 4fs7_A Uncharacterized protein 99.0 5.8E-09 2E-13 113.2 16.3 179 79-265 176-376 (394)
410 2ra8_A Uncharacterized protein 98.9 2.8E-10 9.7E-15 121.1 1.3 81 208-288 253-341 (362)
411 2ra8_A Uncharacterized protein 98.8 7.4E-10 2.5E-14 117.9 2.5 156 82-242 166-341 (362)
412 4h09_A Hypothetical leucine ri 98.7 3.6E-07 1.2E-11 98.4 18.2 263 12-285 41-341 (379)
413 3r70_A Aminoglycoside phosphot 98.6 1.7E-07 5.9E-12 98.3 10.7 137 417-566 38-238 (320)
414 4h09_A Hypothetical leucine ri 98.5 1.2E-06 4.1E-11 94.3 16.7 243 12-265 64-343 (379)
415 3d1u_A Putative fructosamine-3 98.5 3.1E-07 1.1E-11 94.6 11.5 141 418-564 17-215 (288)
416 3ovc_A Hygromycin-B 4-O-kinase 98.5 2E-07 6.9E-12 99.5 9.7 144 418-567 43-245 (362)
417 3rw6_A Nuclear RNA export fact 98.5 1.6E-08 5.5E-13 102.0 -0.2 104 84-190 137-257 (267)
418 1io0_A Tropomodulin; LRR prote 98.5 2.9E-08 9.9E-13 95.2 1.0 117 80-196 28-163 (185)
419 1io0_A Tropomodulin; LRR prote 98.4 1.9E-08 6.5E-13 96.5 -0.6 123 32-173 27-164 (185)
420 3tdw_A Gentamicin resistance p 98.4 1.3E-06 4.4E-11 91.0 12.8 136 421-565 24-224 (306)
421 3rw6_A Nuclear RNA export fact 98.4 5.9E-08 2E-12 97.9 2.4 97 69-167 148-258 (267)
422 4gkh_A Aminoglycoside 3'-phosp 98.4 1.7E-06 5.8E-11 88.3 13.4 134 423-564 31-222 (272)
423 3ats_A Putative uncharacterize 98.2 6.6E-07 2.2E-11 95.5 4.9 79 421-499 25-120 (357)
424 2q83_A YTAA protein; 2635576, 98.1 7.1E-06 2.4E-10 86.7 9.2 138 422-564 38-251 (346)
425 2olc_A MTR kinase, methylthior 98.1 9E-06 3.1E-10 88.0 10.1 75 421-497 35-120 (397)
426 3jr1_A Putative fructosamine-3 97.9 5.8E-05 2E-09 78.2 11.3 138 419-561 39-232 (312)
427 3e4g_A ATP synthase subunit S, 97.9 6.9E-06 2.3E-10 76.8 3.6 84 88-171 61-150 (176)
428 3f7w_A Putative fructosamine-3 97.8 9.9E-05 3.4E-09 75.8 12.4 79 416-498 15-96 (288)
429 3e4g_A ATP synthase subunit S, 97.7 1.4E-05 4.9E-10 74.6 2.8 91 105-195 54-150 (176)
430 2pyw_A Uncharacterized protein 97.6 0.00017 5.9E-09 78.4 11.2 74 420-496 38-122 (420)
431 3csv_A Aminoglycoside phosphot 97.3 0.0014 4.7E-08 68.7 12.6 140 421-565 23-217 (333)
432 1pgv_A TMD-1, tropomodulin TMD 97.3 7.1E-05 2.4E-09 71.3 1.9 111 84-194 37-167 (197)
433 3dxq_A Choline/ethanolamine ki 97.3 0.0005 1.7E-08 71.0 8.5 128 421-565 23-202 (301)
434 1nw1_A Choline kinase (49.2 KD 97.2 0.00034 1.2E-08 76.1 7.2 71 421-497 78-157 (429)
435 3feg_A Choline/ethanolamine ki 97.2 0.00062 2.1E-08 72.4 8.4 138 422-564 56-253 (379)
436 1zyl_A Hypothetical protein YI 97.2 0.0015 5.2E-08 68.2 11.4 140 422-565 32-223 (328)
437 2ppq_A HSK, HK, homoserine kin 97.2 0.0011 3.6E-08 69.1 9.8 141 421-564 27-216 (322)
438 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00021 7.2E-09 68.0 1.3 119 106-244 35-170 (197)
439 2qg7_A Ethanolamine kinase PV0 96.9 0.0029 9.8E-08 69.1 9.8 73 421-498 113-187 (458)
440 3i1a_A Spectinomycin phosphotr 96.7 0.012 4E-07 61.8 12.9 68 425-499 32-108 (339)
441 3rfe_A Platelet glycoprotein I 96.7 0.0024 8.3E-08 56.6 6.5 61 210-272 11-72 (130)
442 3c5i_A Choline kinase; choline 96.6 0.0014 4.8E-08 69.8 5.2 73 421-498 38-120 (369)
443 3rfe_A Platelet glycoprotein I 96.6 0.0028 9.4E-08 56.2 5.8 35 114-148 33-67 (130)
444 3f2s_A CK, chetk-alpha, cholin 96.3 0.0085 2.9E-07 63.9 8.6 139 422-564 58-279 (401)
445 2yle_A Protein spire homolog 1 96.2 0.048 1.6E-06 52.1 12.1 103 497-616 33-135 (229)
446 3mes_A Choline kinase; malaria 95.4 0.014 4.7E-07 62.9 5.6 73 421-498 75-156 (424)
447 3g15_A CK, chetk-alpha, cholin 91.4 0.32 1.1E-05 51.9 7.5 29 537-565 246-280 (401)
448 4ann_A ESSB; membrane protein, 84.9 1.4 4.8E-05 41.9 6.3 114 470-617 43-157 (215)
449 4ano_A ESSB; membrane protein, 84.1 3 0.0001 39.8 8.2 113 470-617 48-162 (219)
450 3cxl_A N-chimerin; SH2, RHO-GA 79.4 0.32 1.1E-05 52.9 -0.5 62 419-483 145-215 (463)
451 2lz0_A Uncharacterized protein 47.4 39 0.0013 27.5 6.2 46 76-122 8-53 (100)
452 1cja_A Protein (actin-fragmin 44.7 1.2E+02 0.004 30.8 10.2 139 418-565 71-237 (342)
453 2lz0_A Uncharacterized protein 44.4 30 0.001 28.3 5.0 48 217-265 6-53 (100)
454 3ls8_A Phosphatidylinositol 3- 38.7 2.8E+02 0.0097 30.6 13.0 82 475-564 402-501 (614)
No 1
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=3.8e-55 Score=456.72 Aligned_cols=256 Identities=28% Similarity=0.501 Sum_probs=214.4
Q ss_pred cCccccCcccCCCCccEEEeecc------CCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLLA------DGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 489 (756)
++|...+.||+|+||+||+|++. ++..||||+++.......++|.+|+++|++++|||||+++|+|.+++..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 57788899999999999999853 478899999987766667889999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhc------------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEE
Q 004400 490 IYEYLENNSLARALFEH------------RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKI 557 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~------------~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl 557 (756)
|||||++|+|.++|+.. ...++|.++..|+.|||+||+|||+++ ||||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccCHhhEEECCCCcEEE
Confidence 99999999999999754 247999999999999999999999986 999999999999999999999
Q ss_pred ccCCccccCcccCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhc
Q 004400 558 SDFGLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQ 635 (756)
Q Consensus 558 ~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 635 (756)
+|||+|+........ ......||+.|||||++.+..|+.++|||||||++|||+| |+.||...+........ ..
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i----~~ 245 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECI----TQ 245 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHH----HH
T ss_pred CCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH----Hc
Confidence 999999865443332 2334579999999999999999999999999999999999 89999776654443322 12
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 636 GKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
+..... ...++ ..+.+++.+||+.||++||||+||++.|+.+.
T Consensus 246 ~~~~~~-----p~~~~----~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~ 288 (299)
T 4asz_A 246 GRVLQR-----PRTCP----QEVYELMLGCWQREPHMRKNIKGIHTLLQNLA 288 (299)
T ss_dssp TCCCCC-----CTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCC-----Cccch----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 222111 12233 34889999999999999999999999998653
No 2
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=9.9e-55 Score=455.52 Aligned_cols=256 Identities=28% Similarity=0.419 Sum_probs=213.0
Q ss_pred CccccCcccCCCCccEEEeecc------CCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEE
Q 004400 417 NFATDNNIGEGGFGPVYKGLLA------DGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 417 ~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 489 (756)
+++..+.||+|+||+||+|++. +++.||||+++... ....++|.+|+.++++++|||||+++|+|.+++..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence 4556788999999999999862 56789999997543 3345789999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhc---------------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC
Q 004400 490 IYEYLENNSLARALFEH---------------RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN 554 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~---------------~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~ 554 (756)
|||||++|+|.++|... ...++|..+.+|+.|||+||+|||+++ ||||||||+|||+++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCccccceEECCCCC
Confidence 99999999999999743 235899999999999999999999986 999999999999999999
Q ss_pred EEEccCCccccCcccC-cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHH
Q 004400 555 SKISDFGLAKLDEEEN-THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVL 632 (756)
Q Consensus 555 ~kl~DFGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~ 632 (756)
+||+|||+|+...... ....+...||+.|||||++.++.|+.++|||||||++|||+| |+.||.+.+........
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i--- 260 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMI--- 260 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHH---
T ss_pred EEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHH---
Confidence 9999999998654433 223445689999999999999999999999999999999998 89999776654443322
Q ss_pred HhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 633 KEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
..+...... ..++ ..+.+++.+||+.||++||||.||++.|+++.+
T Consensus 261 -~~~~~~~~p-----~~~~----~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~n 306 (308)
T 4gt4_A 261 -RNRQVLPCP-----DDCP----AWVYALMIECWNEFPSRRPRFKDIHSRLRAWGN 306 (308)
T ss_dssp -HTTCCCCCC-----TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCC
T ss_pred -HcCCCCCCc-----ccch----HHHHHHHHHHcCCChhHCcCHHHHHHHHHhccC
Confidence 222222211 1223 348899999999999999999999999998754
No 3
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.5e-54 Score=458.60 Aligned_cols=257 Identities=28% Similarity=0.464 Sum_probs=209.1
Q ss_pred cCccccCcccCCCCccEEEeecc------CCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLLA------DGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 489 (756)
++|...+.||+|+||+||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+++..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 46777889999999999999854 478999999987766677889999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhcC--------------CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCE
Q 004400 490 IYEYLENNSLARALFEHR--------------LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNS 555 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~--------------~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~ 555 (756)
|||||++|+|.++++... ..++|.++.+|+.|||+||+|||+.+ ||||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHhhEEECCCCcE
Confidence 999999999999997532 35899999999999999999999986 9999999999999999999
Q ss_pred EEccCCccccCcccCc-ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHH
Q 004400 556 KISDFGLAKLDEEENT-HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLK 633 (756)
Q Consensus 556 kl~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~ 633 (756)
||+|||+|+....... .......||+.|||||++.+..++.++|||||||++|||+| |+.||............ .
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i---~ 274 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCI---T 274 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHH---H
T ss_pred EEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHH---H
Confidence 9999999986644332 23445789999999999999999999999999999999999 89999776654443322 1
Q ss_pred hcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 634 EQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.+..... ...++ ..+.+++.+||+.||++||||.||++.|+.+..
T Consensus 275 -~g~~~~~-----p~~~~----~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 275 -QGRELER-----PRACP----PEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp -HTCCCCC-----CTTCC----HHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred -cCCCCCC-----ccccc----HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence 1221111 12233 348899999999999999999999999997654
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-54 Score=447.05 Aligned_cols=257 Identities=26% Similarity=0.430 Sum_probs=203.9
Q ss_pred cCccccCcccCCCCccEEEeeccCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 416 NNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
+++...+.||+|+||+||+|++.+ .||||+++.. .....+.|.+|++++++++|||||+++|+|.+ +..++||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEc
Confidence 567788899999999999999753 5999998653 33445789999999999999999999998864 568999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC-cc
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN-TH 572 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~-~~ 572 (756)
|++|+|.++|+.....++|.++..|+.|||+||+|||+++ ||||||||+|||+++++.+||+|||+|+...... ..
T Consensus 113 ~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~ 189 (307)
T 3omv_A 113 CEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQ 189 (307)
T ss_dssp CSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC--------
T ss_pred CCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCccCHHHEEECCCCcEEEeeccCceecccCCcce
Confidence 9999999999877778999999999999999999999986 9999999999999999999999999998765432 23
Q ss_pred eeeccccCccCCchHhhhc---CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 573 ISTRVAGTIGYMAPEYAMR---GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
.....+||+.|||||++.+ +.|+.++|||||||++|||+||+.||...+....... ....+.....+ ..
T Consensus 190 ~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~---~~~~~~~~p~~-----~~ 261 (307)
T 3omv_A 190 QVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIF---MVGRGYASPDL-----SK 261 (307)
T ss_dssp ----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHH---HHHTTCCCCCS-----TT
T ss_pred eecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHH---HHhcCCCCCCc-----cc
Confidence 3455789999999999974 3589999999999999999999999976543322221 11111111100 01
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccC
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECG 686 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~ 686 (756)
.+...+..+.+++.+||+.||++||||.||++.|+.+
T Consensus 262 ~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l 298 (307)
T 3omv_A 262 LYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELL 298 (307)
T ss_dssp SCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 1122234588999999999999999999999998854
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=1.4e-52 Score=443.19 Aligned_cols=249 Identities=22% Similarity=0.376 Sum_probs=204.7
Q ss_pred cCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
++|+..+.||+|+||+||+|+ ..+|+.||||++... .....+.+.+|+++|++++|||||++++++.+++..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 589999999999999999999 467999999999654 23345679999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 493 YLENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 493 ~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
||+||+|.+++... ...+++..++.|+.||+.||+|||++| ||||||||+|||++.++.+||+|||+|+.......
T Consensus 104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~ 180 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVE 180 (350)
T ss_dssp CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHHH
T ss_pred CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCCEEEcccccceeecCCcc
Confidence 99999999999754 345799999999999999999999997 99999999999999999999999999987654321
Q ss_pred ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFD 651 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (756)
.....+||+.|||||++.+..|+.++|||||||++|||+||+.||...+........ .. +... .....++
T Consensus 181 -~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i---~~-~~~~-----~~~~~~s 250 (350)
T 4b9d_A 181 -LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKI---IS-GSFP-----PVSLHYS 250 (350)
T ss_dssp -HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH---HH-TCCC-----CCCTTSC
T ss_pred -cccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHH---Hc-CCCC-----CCCccCC
Confidence 234568999999999999999999999999999999999999999877655443221 11 1111 1112233
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 652 KEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 652 ~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
..+.+++.+||+.||++|||+.|+++
T Consensus 251 ----~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 251 ----YDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp ----HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence 34889999999999999999999976
No 6
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=1.7e-52 Score=441.86 Aligned_cols=249 Identities=25% Similarity=0.406 Sum_probs=211.0
Q ss_pred cCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEec
Q 004400 416 NNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYL 494 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 494 (756)
..|+..+.||+|+||+||+|+. .+|+.||||++........+.+.+|+++|++++|||||+++++|.+++..|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 4688999999999999999994 579999999997665555677899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCccee
Q 004400 495 ENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHIS 574 (756)
Q Consensus 495 ~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~~ 574 (756)
++|+|.+++... .+++..+..++.||+.||+|||+++ ||||||||+|||++.++.+||+|||+|+....... ..
T Consensus 154 ~gg~L~~~l~~~--~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~-~~ 227 (346)
T 4fih_A 154 EGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-RR 227 (346)
T ss_dssp TTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-CB
T ss_pred CCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEECCCCCEEEecCcCceecCCCCC-cc
Confidence 999999998653 6999999999999999999999997 99999999999999999999999999987654332 23
Q ss_pred eccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHHH
Q 004400 575 TRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQ 654 (756)
Q Consensus 575 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (756)
...+||+.|||||++.+..|+.++||||+||++|||++|+.||...+........ .. ..... .......
T Consensus 228 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i---~~-~~~~~-------~~~~~~~ 296 (346)
T 4fih_A 228 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMI---RD-NLPPR-------LKNLHKV 296 (346)
T ss_dssp CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH---HH-SSCCC-------CSCGGGS
T ss_pred cccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHH---Hc-CCCCC-------CCccccC
Confidence 4578999999999999999999999999999999999999999877655443321 11 11000 0111122
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 655 VMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 655 ~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
...+.+++.+||+.||++|||+.|+++
T Consensus 297 s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 297 SPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp CHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 334889999999999999999999876
No 7
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=4.4e-52 Score=437.50 Aligned_cols=252 Identities=25% Similarity=0.256 Sum_probs=205.4
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
.+.|...+.||+|+||+||+|+. .+|+.||||+++.... ..+|+.++++++|||||+++++|.+++..|+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 35678888999999999999994 5799999999965322 24699999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCC-CEEEccCCccccCcccCcc
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDL-NSKISDFGLAKLDEEENTH 572 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~-~~kl~DFGla~~~~~~~~~ 572 (756)
|+||+|.+++...+ .+++..+..++.||+.||+|||+++ ||||||||+|||++.++ .+||+|||+|+........
T Consensus 132 ~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~ 207 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLG 207 (336)
T ss_dssp CTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC------
T ss_pred cCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcc
Confidence 99999999997654 7999999999999999999999996 99999999999999987 5999999999876543221
Q ss_pred ----eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCC
Q 004400 573 ----ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGS 648 (756)
Q Consensus 573 ----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (756)
....++||+.|||||++.+..|+.++|||||||++|||+||+.||...+...+.... ........+ ...
T Consensus 208 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i--~~~~~~~~~-----~~~ 280 (336)
T 4g3f_A 208 KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKI--ASEPPPIRE-----IPP 280 (336)
T ss_dssp ------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHH--HHSCCGGGG-----SCT
T ss_pred cceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHH--HcCCCCchh-----cCc
Confidence 123468999999999999999999999999999999999999999765443322211 111111111 112
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccC
Q 004400 649 NFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECG 686 (756)
Q Consensus 649 ~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~ 686 (756)
.++ ..+.+++.+||+.||.+|||+.|+++.|..+
T Consensus 281 ~~s----~~~~~li~~~L~~dP~~R~sa~el~~~l~~~ 314 (336)
T 4g3f_A 281 SCA----PLTAQAIQEGLRKEPVHRASAMELRRKVGKA 314 (336)
T ss_dssp TSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred cCC----HHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence 233 3488999999999999999999999988754
No 8
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=8.9e-52 Score=429.85 Aligned_cols=247 Identities=24% Similarity=0.355 Sum_probs=210.4
Q ss_pred cCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
++|+..+.||+|+||+||+|+ ..+|+.||||++.+. .....+.+.+|+++|++++|||||+++++|.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 579999999999999999999 567999999999753 2334577999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC-
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN- 570 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~- 570 (756)
|||+||+|.+++.+. ..+++..+..++.||+.||+|||+++ ||||||||+|||++.++.+||+|||+|+......
T Consensus 112 Ey~~gG~L~~~i~~~-~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~ 187 (311)
T 4aw0_A 112 SYAKNGELLKYIRKI-GSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187 (311)
T ss_dssp CCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTTTT
T ss_pred ecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCC
Confidence 999999999999765 47999999999999999999999997 9999999999999999999999999999765433
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
......++||+.|||||++.+..|+.++||||+||++|||++|+.||...+...+.... ....- . ....+
T Consensus 188 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i--~~~~~---~-----~p~~~ 257 (311)
T 4aw0_A 188 QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKI--IKLEY---D-----FPEKF 257 (311)
T ss_dssp CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH--HHTCC---C-----CCTTC
T ss_pred cccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH--HcCCC---C-----CCccc
Confidence 23345678999999999999999999999999999999999999999877655443321 11111 1 11223
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVL 680 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~ 680 (756)
++ .+.+++.+|++.||++|||++|+.
T Consensus 258 s~----~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 258 FP----KARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp CH----HHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred CH----HHHHHHHHHccCCHhHCcChHHHc
Confidence 33 488999999999999999999863
No 9
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=2.8e-51 Score=443.19 Aligned_cols=250 Identities=25% Similarity=0.412 Sum_probs=212.0
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
.+.|+..+.||+|+||.||+|+ ..+|+.||||++........+.+.+|+.+|++++|||||+++++|.+++.+|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 3579999999999999999999 457999999999766555667799999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcce
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHI 573 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~ 573 (756)
|+||+|.+++... .+++..+..|+.||+.||+|||++| ||||||||+|||++.++.+||+|||+|+....... .
T Consensus 230 ~~gG~L~~~i~~~--~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~-~ 303 (423)
T 4fie_A 230 LEGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-R 303 (423)
T ss_dssp CTTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-C
T ss_pred CCCCcHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEecCccceECCCCCc-c
Confidence 9999999998653 6999999999999999999999997 99999999999999999999999999987654332 2
Q ss_pred eeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHH
Q 004400 574 STRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKE 653 (756)
Q Consensus 574 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (756)
....+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+........ .. ...... .....++
T Consensus 304 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i---~~-~~~~~~---~~~~~~s-- 374 (423)
T 4fie_A 304 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMI---RD-NLPPRL---KNLHKVS-- 374 (423)
T ss_dssp BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH---HH-SCCCCC---SCTTSSC--
T ss_pred ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHH---Hc-CCCCCC---cccccCC--
Confidence 34578999999999999999999999999999999999999999877655443321 11 111010 0111233
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 654 QVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 654 ~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
..+.+++.+||+.||++|||+.|+++
T Consensus 375 --~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 375 --PSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp --HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 34889999999999999999999876
No 10
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-51 Score=426.48 Aligned_cols=246 Identities=27% Similarity=0.419 Sum_probs=198.1
Q ss_pred cccCcccCCCCccEEEeec-cCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEe----CCeEEEEE
Q 004400 419 ATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIE----GNQLLLIY 491 (756)
Q Consensus 419 ~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lV~ 491 (756)
...+.||+|+||+||+|+. .++..||+|.+... .....+.|.+|++++++++|||||+++++|.+ ++..|+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 5667899999999999994 57899999998654 33345679999999999999999999999875 35689999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC-CCCEEEccCCccccCcccC
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK-DLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~-~~~~kl~DFGla~~~~~~~ 570 (756)
|||++|+|.+++.+. ..+++..+..++.||+.||+|||+++ ++||||||||+|||++. ++.+||+|||+|+.....
T Consensus 109 Ey~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~- 185 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS- 185 (290)
T ss_dssp ECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTT-
T ss_pred eCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEeCcCCEeCCCC-
Confidence 999999999999754 47999999999999999999999884 45999999999999984 789999999999864332
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
.....+||+.|||||++.+ .|+.++|||||||++|||+||+.||......... .... ..+......+ ...
T Consensus 186 --~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~--~~~i-~~~~~~~~~~----~~~ 255 (290)
T 3fpq_A 186 --FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQI--YRRV-TSGVKPASFD----KVA 255 (290)
T ss_dssp --SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHH--HHHH-TTTCCCGGGG----GCC
T ss_pred --ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHH--HHHH-HcCCCCCCCC----ccC
Confidence 2345789999999998864 6999999999999999999999999654332211 1111 1111111111 112
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
++ .+.+++.+||+.||++|||+.|+++
T Consensus 256 ~~----~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 256 IP----EVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp CH----HHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CH----HHHHHHHHHccCChhHCcCHHHHhc
Confidence 22 4889999999999999999999976
No 11
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=7.2e-51 Score=417.43 Aligned_cols=246 Identities=26% Similarity=0.412 Sum_probs=193.5
Q ss_pred cCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
++|+..+.||+|+||+||+|+ ..+|+.||||++.+. .......+.+|++++++++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 589999999999999999999 467999999999654 2234567999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
||| +|+|.+++.+. ..+++..+..++.||+.||+|||+++ |+||||||+|||+++++.+||+|||+|+......
T Consensus 93 Ey~-~g~L~~~l~~~-~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~- 166 (275)
T 3hyh_A 93 EYA-GNELFDYIVQR-DKMSEQEARRFFQQIISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN- 166 (275)
T ss_dssp ECC-CEEHHHHHHHS-CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTCCEEECCSSCC--------
T ss_pred eCC-CCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCChHHeEECCCCCEEEeecCCCeecCCCC-
Confidence 999 67999999765 47999999999999999999999997 9999999999999999999999999998654432
Q ss_pred ceeeccccCccCCchHhhhcCCC-CcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHL-TEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
.....+||+.|||||++.+..+ +.++||||+||++|||+||+.||...+........ .. +.. . .....
T Consensus 167 -~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i---~~-~~~-~-----~p~~~ 235 (275)
T 3hyh_A 167 -FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNI---SN-GVY-T-----LPKFL 235 (275)
T ss_dssp ---------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH-TCC-C-----CCTTS
T ss_pred -ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---Hc-CCC-C-----CCCCC
Confidence 2345689999999999988775 57999999999999999999999776554433211 11 111 1 11223
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
+ ..+.+++.+|++.||++|||+.|+++.
T Consensus 236 s----~~~~~li~~~L~~dP~~R~s~~eil~h 263 (275)
T 3hyh_A 236 S----PGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp C----HHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred C----HHHHHHHHHHccCChhHCcCHHHHHcC
Confidence 3 348899999999999999999999873
No 12
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=2.1e-51 Score=437.87 Aligned_cols=259 Identities=25% Similarity=0.370 Sum_probs=210.9
Q ss_pred hhcCccccCcccCCCCccEEEeecc------CCcEEEEEEccccC-cccHHHHHHHHHHHHhCCC-CceeeEeeEEEeC-
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLA------DGTAIAVKQLSSKS-KQGNREFINEIGMISALQH-PNLVKLYGCCIEG- 484 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~- 484 (756)
..++|+..+.||+|+||+||+|++. .++.||||.+.... ....+.|.+|+++|++++| ||||+++|+|.++
T Consensus 62 ~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~ 141 (353)
T 4ase_A 62 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG 141 (353)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred cHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecC
Confidence 3468899999999999999999853 24689999997643 3345679999999999965 8999999999764
Q ss_pred CeEEEEEEecCCCCHHHHHHhc---------------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe
Q 004400 485 NQLLLIYEYLENNSLARALFEH---------------RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL 549 (756)
Q Consensus 485 ~~~~lV~e~~~~gsL~~~l~~~---------------~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill 549 (756)
+..++|||||++|+|.++|+.. ...++|..+..++.|||+||+|||+++ ||||||||+|||+
T Consensus 142 ~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDLK~~NILl 218 (353)
T 4ase_A 142 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILL 218 (353)
T ss_dssp SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEE
T ss_pred CEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCC---eecCccCccceee
Confidence 5789999999999999999753 235899999999999999999999996 9999999999999
Q ss_pred cCCCCEEEccCCccccCcccCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHH
Q 004400 550 DKDLNSKISDFGLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLD 627 (756)
Q Consensus 550 ~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~ 627 (756)
++++.+||+|||+|+........ ......||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.......
T Consensus 219 ~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~- 297 (353)
T 4ase_A 219 SEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF- 297 (353)
T ss_dssp CGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHH-
T ss_pred CCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHH-
Confidence 99999999999999976544333 3445789999999999999999999999999999999998 99999765432211
Q ss_pred HHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 628 WALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
......+...... ..++ ..+.+++.+||+.||++||||.||++.|+.+.
T Consensus 298 --~~~i~~g~~~~~p-----~~~~----~~~~~li~~c~~~dP~~RPt~~eil~~L~~ll 346 (353)
T 4ase_A 298 --CRRLKEGTRMRAP-----DYTT----PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 346 (353)
T ss_dssp --HHHHHHTCCCCCC-----TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --HHHHHcCCCCCCC-----ccCC----HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 1111222222221 1223 34889999999999999999999999998653
No 13
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=6.2e-51 Score=427.83 Aligned_cols=264 Identities=28% Similarity=0.339 Sum_probs=198.9
Q ss_pred cCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC----eEEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGN----QLLLIY 491 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~lV~ 491 (756)
++|...+.||+|+||+||+|++ +|+.||||++..... ....+.+|+..+.+++|||||+++++|.+++ ..|+||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 4577788999999999999997 589999999965322 1222344566667889999999999998754 689999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCC-----CCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGES-----RIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g-----~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
|||++|+|.++++.. .++|..+.+++.|+|+||+|||+++ .++||||||||+|||++.++.+||+|||+|+..
T Consensus 81 Ey~~~gsL~~~l~~~--~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 158 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 158 (303)
T ss_dssp ECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred cCCCCCcHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccc
Confidence 999999999999754 6899999999999999999999862 346999999999999999999999999999876
Q ss_pred cccCcce---eeccccCccCCchHhhhcC------CCCcccchhhHHHHHHHHHhCCCCCCccchhh------------H
Q 004400 567 EEENTHI---STRVAGTIGYMAPEYAMRG------HLTEKADVYSFGIVALEIVSGRSNVTKEDMFY------------L 625 (756)
Q Consensus 567 ~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~------------~ 625 (756)
....... ....+||+.|||||++.+. .++.++|||||||++|||+||+.|+....... .
T Consensus 159 ~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~ 238 (303)
T 3hmm_A 159 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV 238 (303)
T ss_dssp ETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred cCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchH
Confidence 5433221 2346799999999999754 36789999999999999999988763322110 0
Q ss_pred HHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 626 LDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
...............+.+ ...+.+....+.+++.+||+.||++||||.||++.|+++.
T Consensus 239 ~~~~~~~~~~~~rp~~p~----~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~ 296 (303)
T 3hmm_A 239 EEMRKVVCEQKLRPNIPN----RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS 296 (303)
T ss_dssp HHHHHHHTTSCCCCCCCG----GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCCCc----cccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence 111111111111111111 1112345567889999999999999999999999998654
No 14
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=1.3e-50 Score=421.33 Aligned_cols=242 Identities=24% Similarity=0.325 Sum_probs=196.1
Q ss_pred cCccccCcccCCCCccEEEeec----cCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLL----ADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 489 (756)
++|+..+.||+|+||+||+|+. .+++.||||+++... ......+.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 5799999999999999999974 247899999997542 2234568899999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 490 IYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
|||||+||+|.+++.+.+ .+++..+..++.||+.||+|||++| ||||||||+|||++.++.+||+|||+|+.....
T Consensus 104 vmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 179 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESIDH 179 (304)
T ss_dssp EECCCTTCEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTSCEEEESSEEEEC----
T ss_pred EEEcCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHeEEcCCCCEEecccccceeccCC
Confidence 999999999999997654 7999999999999999999999997 999999999999999999999999999865433
Q ss_pred CcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 570 NTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
.. .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.+........ .. ... . ....
T Consensus 180 ~~-~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i---~~-~~~-~-----~p~~ 248 (304)
T 3ubd_A 180 EK-KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMI---LK-AKL-G-----MPQF 248 (304)
T ss_dssp -C-CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH-CCC-C-----CCTT
T ss_pred Cc-cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHH---Hc-CCC-C-----CCCc
Confidence 22 234578999999999999999999999999999999999999999877655443321 11 111 1 1122
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCH
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSM 676 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~ 676 (756)
.+ ..+.+++.+||+.||++|||+
T Consensus 249 ~s----~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 249 LS----PEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp SC----HHHHHHHHHHTCSSGGGSTTC
T ss_pred CC----HHHHHHHHHHcccCHHHCCCC
Confidence 33 348899999999999999985
No 15
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=6.5e-49 Score=410.38 Aligned_cols=248 Identities=22% Similarity=0.375 Sum_probs=188.5
Q ss_pred cCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCc-ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC--------
Q 004400 416 NNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSK-QGNREFINEIGMISALQHPNLVKLYGCCIEGN-------- 485 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-------- 485 (756)
++|+..+.||+|+||+||+|+ ..+|+.||||+++.... ...+.+.+|+++|++++|||||+++++|.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 468999999999999999999 45799999999865433 34467899999999999999999999987644
Q ss_pred ----eEEEEEEecCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEcc
Q 004400 486 ----QLLLIYEYLENNSLARALFEHRL--KLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISD 559 (756)
Q Consensus 486 ----~~~lV~e~~~~gsL~~~l~~~~~--~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~D 559 (756)
..|+|||||++|+|.+++..... ..++..++.++.||+.||+|||+++ ||||||||+|||++.++.+||+|
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~---IiHRDlKp~NILl~~~~~vKl~D 161 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGD 161 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCc---CccccCcHHHeEECCCCcEEEcc
Confidence 37999999999999999975432 3566778999999999999999997 99999999999999999999999
Q ss_pred CCccccCcccCcc-----------eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHH
Q 004400 560 FGLAKLDEEENTH-----------ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDW 628 (756)
Q Consensus 560 FGla~~~~~~~~~-----------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 628 (756)
||+|+........ ..+..+||+.|||||++.+..|+.++|||||||++|||++ ||...... ...
T Consensus 162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~--~~~ 236 (299)
T 4g31_A 162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMER--VRT 236 (299)
T ss_dssp CCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHH--HHH
T ss_pred CccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHH--HHH
Confidence 9999876543221 1234679999999999999999999999999999999996 77543211 111
Q ss_pred HHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 629 ALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
.... ........ .........+++.+||+.||++|||+.|+++
T Consensus 237 ~~~~-~~~~~p~~---------~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 237 LTDV-RNLKFPPL---------FTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHH-HTTCCCHH---------HHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHH-hcCCCCCC---------CcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1111 11111110 1122234678999999999999999999987
No 16
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-46 Score=407.12 Aligned_cols=262 Identities=20% Similarity=0.316 Sum_probs=205.0
Q ss_pred cCccccCcccCCCCccEEEee-ccCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEe------CCe
Q 004400 416 NNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIE------GNQ 486 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~ 486 (756)
++|+..+.||+|+||+||+|+ ..+|+.||||+++... ....+.+.+|+++|+.++|||||++++++.. .+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 579999999999999999999 4679999999997542 2334678899999999999999999999764 367
Q ss_pred EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 487 LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
.|+|||||+ |+|.+++... ..+++..+..++.||+.||+|||++| ||||||||+|||++.++.+||+|||+|+..
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~-~~l~~~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~ 208 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSS-QPLTLEHVRYFLYQLLRGLKYMHSAQ---VIHRDLKPSNLLVNENCELKIGDFGMARGL 208 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSS-SCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTCBCC
T ss_pred EEEEEeCCC-CCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCc---CcCCCcCccccccCCCCCEEEeecceeeec
Confidence 899999996 6799988654 57999999999999999999999997 999999999999999999999999999865
Q ss_pred cccC---cceeeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccc--
Q 004400 567 EEEN---THISTRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLME-- 640 (756)
Q Consensus 567 ~~~~---~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~-- 640 (756)
.... .......+||+.|||||++.+. .++.++||||+||++|||++|+.||.+.+...................
T Consensus 209 ~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~ 288 (398)
T 4b99_A 209 CTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQ 288 (398)
T ss_dssp -------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC
T ss_pred ccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhh
Confidence 4322 2223457899999999998875 579999999999999999999999988776554433322211111000
Q ss_pred ---------ccccCC-CCCCCH-----HHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 641 ---------LVDTNP-GSNFDK-----EQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 641 ---------~~~~~~-~~~~~~-----~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.+...+ ....+. .....+.+++.+|++.||++|||+.|+++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 345 (398)
T 4b99_A 289 AVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH 345 (398)
T ss_dssp -----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred hhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 000000 000000 112357899999999999999999999863
No 17
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=6.4e-46 Score=398.34 Aligned_cols=203 Identities=27% Similarity=0.436 Sum_probs=173.4
Q ss_pred hhHHHhhcCccccCcccCCCCccEEEeec----cCCcEEEEEEccccCcccHHHHHHHHHHHHhC-CCCceeeEeeEEEe
Q 004400 409 LQIKAATNNFATDNNIGEGGFGPVYKGLL----ADGTAIAVKQLSSKSKQGNREFINEIGMISAL-QHPNLVKLYGCCIE 483 (756)
Q Consensus 409 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 483 (756)
..+....+.|+..+.||+|+||+||+|+. .+++.||||.+.... ...++.+|+++|+.+ +|||||+++++|.+
T Consensus 14 ~~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~ 91 (361)
T 4f9c_A 14 EAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRK 91 (361)
T ss_dssp HHSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEE
T ss_pred HhcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEE
Confidence 33445567899999999999999999974 246889999986543 346788999999998 69999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCC-CCEEEccCCc
Q 004400 484 GNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKD-LNSKISDFGL 562 (756)
Q Consensus 484 ~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~-~~~kl~DFGl 562 (756)
++..|+|||||++|+|.+++. .+++.++..++.||+.||+|||++| ||||||||+|||++.+ +.+||+|||+
T Consensus 92 ~~~~~lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~ylH~~g---IiHRDiKPeNiLl~~~~~~~kl~DFGl 164 (361)
T 4f9c_A 92 NDHVVIAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRIHQFG---IVHRDVKPSNFLYNRRLKKYALVDFGL 164 (361)
T ss_dssp TTEEEEEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred CCEEEEEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCcCCHHHeEEeCCCCeEEECcCCC
Confidence 999999999999999999883 5899999999999999999999997 9999999999999877 7899999999
Q ss_pred cccCcccCc---------------------------ceeeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCC
Q 004400 563 AKLDEEENT---------------------------HISTRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGR 614 (756)
Q Consensus 563 a~~~~~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~ 614 (756)
|+....... ...+..+||+.|+|||++.+. .|+.++||||+||++|||++|+
T Consensus 165 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~ 244 (361)
T 4f9c_A 165 AQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGR 244 (361)
T ss_dssp CEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTC
T ss_pred CcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCC
Confidence 985443211 112345799999999999875 5899999999999999999999
Q ss_pred CCCCcc
Q 004400 615 SNVTKE 620 (756)
Q Consensus 615 ~p~~~~ 620 (756)
.||...
T Consensus 245 ~Pf~~~ 250 (361)
T 4f9c_A 245 YPFYKA 250 (361)
T ss_dssp SSSSCC
T ss_pred CCCCCC
Confidence 999543
No 18
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=2.2e-45 Score=418.01 Aligned_cols=253 Identities=23% Similarity=0.323 Sum_probs=213.2
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
.++|++.+.||+|+||.||+|+ ..+|+.||+|++........+.+.+|+++|+.++|||||+++++|.+++..|+||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 3689999999999999999999 467999999999776555667889999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCC--CCEEEccCCccccCcccCc
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKD--LNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~--~~~kl~DFGla~~~~~~~~ 571 (756)
|+||+|.+++......+++..+..++.||+.||+|||+++ |+||||||+|||++.+ +.+||+|||+|+.......
T Consensus 236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~ 312 (573)
T 3uto_A 236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS 312 (573)
T ss_dssp CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSE
T ss_pred cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhccccCCCCCCEEEeeccceeEccCCCc
Confidence 9999999999766668999999999999999999999997 9999999999999854 7899999999997654432
Q ss_pred ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFD 651 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (756)
....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.+........ ....... .......++
T Consensus 313 --~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i--~~~~~~~----~~~~~~~~s 384 (573)
T 3uto_A 313 --VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNV--KSCDWNM----DDSAFSGIS 384 (573)
T ss_dssp --EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHH--HTTCCCC----CSGGGTTSC
T ss_pred --eeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHH--HhCCCCC----CcccccCCC
Confidence 34468999999999999999999999999999999999999999877654443221 1111111 111111233
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 652 KEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 652 ~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..+.+|+.+||+.||.+|||+.|+++.
T Consensus 385 ----~~~~dli~~~L~~dp~~R~t~~e~l~H 411 (573)
T 3uto_A 385 ----EDGKDFIRKLLLADPNTRMTIHQALEH 411 (573)
T ss_dssp ----HHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ----HHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 347899999999999999999999874
No 19
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=2e-45 Score=391.36 Aligned_cols=277 Identities=43% Similarity=0.767 Sum_probs=238.7
Q ss_pred hHHHhhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEE
Q 004400 410 QIKAATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 410 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 489 (756)
++..++++|+..+.||+|+||.||+|+..+++.||||++........+.+.+|+++++.++||||+++++++.+++..++
T Consensus 33 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 112 (321)
T 2qkw_B 33 DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMIL 112 (321)
T ss_dssp CCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEE
T ss_pred HHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEE
Confidence 45567889999999999999999999988899999999887666667889999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 490 IYEYLENNSLARALFEHR---LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~---~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
||||+++|+|.+++.... ..+++..+..++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++..
T Consensus 113 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 189 (321)
T 2qkw_B 113 IYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKG 189 (321)
T ss_dssp EEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCSTTEEECTTCCEEECCCTTCEEC
T ss_pred EEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCC---eecCCCCHHHEEECCCCCEEEeeccccccc
Confidence 999999999999886432 35899999999999999999999986 999999999999999999999999999864
Q ss_pred cccC-cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccc---hhhHHHHHHHHHhcCcccccc
Q 004400 567 EEEN-THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKED---MFYLLDWALVLKEQGKLMELV 642 (756)
Q Consensus 567 ~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~ 642 (756)
.... ........||+.|+|||++.+..++.++|||||||++|||++|+.||.... ......|.......+.....+
T Consensus 190 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (321)
T 2qkw_B 190 TELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIV 269 (321)
T ss_dssp SSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSS
T ss_pred ccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhc
Confidence 4322 222344568999999999999999999999999999999999999995443 233445555555556666677
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCccc
Q 004400 643 DTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDV 689 (756)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~ 689 (756)
++........+....+.+++.+||+.||++|||+.|+++.|+.....
T Consensus 270 ~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~ 316 (321)
T 2qkw_B 270 DPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316 (321)
T ss_dssp SSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred ChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence 77666677888889999999999999999999999999999976543
No 20
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=1.7e-45 Score=415.18 Aligned_cols=250 Identities=26% Similarity=0.315 Sum_probs=200.7
Q ss_pred hhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccC---cccHHHHHH---HHHHHHhCCCCceeeEeeEEEeCCe
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKS---KQGNREFIN---EIGMISALQHPNLVKLYGCCIEGNQ 486 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~---~~~~~~~~~---E~~~l~~l~h~niv~l~~~~~~~~~ 486 (756)
..++|+..+.||+|+||+||+|+ ..+|+.||||++.+.. ......+.+ ++.+++.++|||||+++++|.+++.
T Consensus 187 slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ 266 (689)
T 3v5w_A 187 TMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK 266 (689)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSE
T ss_pred chHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCE
Confidence 34789999999999999999999 4579999999996531 222233344 4566777899999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 487 LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
+|+|||||+||+|.++|... ..+++..+..++.||+.||+|||++| ||||||||+|||++.+|.+||+|||+|+..
T Consensus 267 lylVmEy~~GGdL~~~l~~~-~~l~E~~a~~y~~qIl~aL~yLH~~g---IiHRDLKPeNILld~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 267 LSFILDLMNGGDLHYHLSQH-GVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDF 342 (689)
T ss_dssp EEEEECCCCSCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHeEEeCCCCEEecccceeeec
Confidence 99999999999999999765 47999999999999999999999997 999999999999999999999999999866
Q ss_pred cccCcceeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccC
Q 004400 567 EEENTHISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTN 645 (756)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (756)
.... ....+||+.|||||++.+ ..|+.++||||+||++|||++|+.||...+............. ... .
T Consensus 343 ~~~~---~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~-~~~------~ 412 (689)
T 3v5w_A 343 SKKK---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT-MAV------E 412 (689)
T ss_dssp SSCC---CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHH-CCC------C
T ss_pred CCCC---CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcC-CCC------C
Confidence 5432 235689999999999975 5799999999999999999999999976543222111111111 110 0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCCCC-----HHHHHH
Q 004400 646 PGSNFDKEQVMVMINVALLCANASPTIRPS-----MSSVLR 681 (756)
Q Consensus 646 ~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt-----~~ev~~ 681 (756)
....++ ..+.+++.+|++.||.+|++ +.||.+
T Consensus 413 ~p~~~S----~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 413 LPDSFS----PELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp CCTTSC----HHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred CCccCC----HHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 112233 34889999999999999998 577743
No 21
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=3.2e-45 Score=390.71 Aligned_cols=279 Identities=46% Similarity=0.798 Sum_probs=238.5
Q ss_pred hhhHHHhhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCc-ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCe
Q 004400 408 YLQIKAATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSK-QGNREFINEIGMISALQHPNLVKLYGCCIEGNQ 486 (756)
Q Consensus 408 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 486 (756)
+.++...+++|...+.||+|+||.||+|...+++.||||++..... .....+.+|+++++.++||||++++++|.+++.
T Consensus 22 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 101 (326)
T 3uim_A 22 LRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE 101 (326)
T ss_dssp THHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSC
T ss_pred HHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCCc
Confidence 4677888999999999999999999999988899999999976432 233478999999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCcc
Q 004400 487 LLLIYEYLENNSLARALFEHR---LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLA 563 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~---~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla 563 (756)
.++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+.+.++|+||||||+||+++.++.+||+|||++
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~ 181 (326)
T 3uim_A 102 RLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLA 181 (326)
T ss_dssp CEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSC
T ss_pred eEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccc
Confidence 999999999999999997532 34999999999999999999999983334999999999999999999999999999
Q ss_pred ccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCc-----cchhhHHHHHHHHHhcCcc
Q 004400 564 KLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTK-----EDMFYLLDWALVLKEQGKL 638 (756)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~-----~~~~~~~~~~~~~~~~~~~ 638 (756)
+..............||+.|+|||++.+..++.++|||||||++|||++|+.||.. .......+|..........
T Consensus 182 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (326)
T 3uim_A 182 KLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKL 261 (326)
T ss_dssp EECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCS
T ss_pred cccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhh
Confidence 87765555555566799999999999999999999999999999999999999942 2223344555444455556
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccC
Q 004400 639 MELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECG 686 (756)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~ 686 (756)
....+......+.......+.+++.+||+.||.+|||+.||++.|++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 262 EALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp TTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred hhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 666666666777888889999999999999999999999999999864
No 22
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.5e-43 Score=374.89 Aligned_cols=261 Identities=27% Similarity=0.427 Sum_probs=213.0
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
.++|...+.||+|+||.||+|.. .+++.||+|.+........+.+.+|++++++++||||+++++++.+++..++||||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 35788899999999999999995 57899999998776666678899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcce
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHI 573 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~ 573 (756)
+++|+|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++.........
T Consensus 89 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 165 (310)
T 3s95_A 89 IKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQP 165 (310)
T ss_dssp CTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEECTTSCEEECCCTTCEECC------
T ss_pred cCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCcCeEEECCCCCEEEeecccceecccccccc
Confidence 9999999999887778999999999999999999999997 9999999999999999999999999998654432211
Q ss_pred -------------eeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccc
Q 004400 574 -------------STRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLME 640 (756)
Q Consensus 574 -------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 640 (756)
.....||+.|+|||++.+..++.++||||||+++|||++|..|+.......... ......
T Consensus 166 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~-------~~~~~~ 238 (310)
T 3s95_A 166 EGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDF-------GLNVRG 238 (310)
T ss_dssp --------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTS-------SBCHHH
T ss_pred cccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHH-------hhhhhc
Confidence 114679999999999999999999999999999999999999885432111000 000000
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCccc
Q 004400 641 LVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDV 689 (756)
Q Consensus 641 ~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~ 689 (756)
..+......++ ..+.+++.+||+.||++|||+.++++.|+++...
T Consensus 239 ~~~~~~~~~~~----~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~ 283 (310)
T 3s95_A 239 FLDRYCPPNCP----PSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH 283 (310)
T ss_dssp HHHHTCCTTCC----TTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cccccCCCCCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 00110111122 2388999999999999999999999999976543
No 23
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=3.9e-43 Score=369.21 Aligned_cols=252 Identities=27% Similarity=0.466 Sum_probs=211.3
Q ss_pred hhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
..++|...+.||+|+||.||+|. ..+++.||||.+........+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 97 (297)
T 3fxz_A 18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME 97 (297)
T ss_dssp GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence 34689999999999999999998 56799999999976655666789999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTH 572 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~ 572 (756)
|+++|+|.+++... .+++..+..++.|++.||+|||++| |+||||||+|||++.++.+||+|||+++........
T Consensus 98 ~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 172 (297)
T 3fxz_A 98 YLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 172 (297)
T ss_dssp CCTTCBHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC
T ss_pred CCCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccc
Confidence 99999999999754 5899999999999999999999997 999999999999999999999999999865543332
Q ss_pred eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCH
Q 004400 573 ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDK 652 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (756)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||...+........ ...... .. ..+.
T Consensus 173 -~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~---~~~~~~-~~-------~~~~ 240 (297)
T 3fxz_A 173 -RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLI---ATNGTP-EL-------QNPE 240 (297)
T ss_dssp -BCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH---HHHCSC-CC-------SCGG
T ss_pred -cCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---HhCCCC-CC-------CCcc
Confidence 33467999999999999999999999999999999999999999766543322211 111110 00 1111
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 653 EQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 653 ~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.....+.+++.+||+.||++|||+.|+++.
T Consensus 241 ~~~~~~~~li~~~l~~dp~~Rps~~ell~h 270 (297)
T 3fxz_A 241 KLSAIFRDFLNRCLEMDVEKRGSAKELLQH 270 (297)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 223348899999999999999999999864
No 24
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=3.4e-43 Score=364.25 Aligned_cols=256 Identities=27% Similarity=0.451 Sum_probs=215.5
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEec
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYL 494 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 494 (756)
.++|+..+.||+|+||.||+|...+++.||+|++.... ...+.+.+|++++++++||||+++++++.+++..++||||+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence 35788899999999999999998889999999997543 34578999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCccee
Q 004400 495 ENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHIS 574 (756)
Q Consensus 495 ~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~~ 574 (756)
++|+|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++..........
T Consensus 88 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~ 164 (269)
T 4hcu_A 88 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS 164 (269)
T ss_dssp TTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHST
T ss_pred CCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCC---eecCCcchheEEEcCCCCEEeccccccccccccccccc
Confidence 999999999877778999999999999999999999997 99999999999999999999999999986654433333
Q ss_pred eccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHH
Q 004400 575 TRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKE 653 (756)
Q Consensus 575 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (756)
....||+.|+|||.+.+..++.++||||+|+++|||++ |+.||............ .. ... .......+
T Consensus 165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~---~~-~~~-----~~~~~~~~-- 233 (269)
T 4hcu_A 165 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDI---ST-GFR-----LYKPRLAS-- 233 (269)
T ss_dssp TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHH---HT-TCC-----CCCCTTSC--
T ss_pred cCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH---hc-Ccc-----CCCCCcCC--
Confidence 44567889999999999999999999999999999999 99999766544332211 11 100 11111222
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 654 QVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 654 ~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
..+.+++.+||+.+|++||++.|+++.|+++.
T Consensus 234 --~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~ 265 (269)
T 4hcu_A 234 --THVYQIMNHCWRERPEDRPAFSRLLRQLAEIA 265 (269)
T ss_dssp --HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHccCCcccCcCHHHHHHHHHHHH
Confidence 34889999999999999999999999998654
No 25
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.2e-43 Score=376.05 Aligned_cols=258 Identities=27% Similarity=0.447 Sum_probs=211.1
Q ss_pred hcCccccCcccCCCCccEEEeecc----CCcEEEEEEcccc-CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLA----DGTAIAVKQLSSK-SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 489 (756)
.++|...+.||+|+||.||+|... .+..||||.++.. .....+.+.+|+.++++++||||+++++++.+++..++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 457888999999999999999963 3456999999764 33445679999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 490 IYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
||||+++|+|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++.....
T Consensus 128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 204 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD 204 (325)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCSSCEECC--
T ss_pred EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEECCCCCEEECCCCcccccccC
Confidence 99999999999999877678999999999999999999999997 999999999999999999999999999876543
Q ss_pred Ccc--eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCC
Q 004400 570 NTH--ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNP 646 (756)
Q Consensus 570 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (756)
... ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||............ .. .... ..
T Consensus 205 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~---~~-~~~~-----~~ 275 (325)
T 3kul_A 205 PDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSV---EE-GYRL-----PA 275 (325)
T ss_dssp --CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHH---HT-TCCC-----CC
T ss_pred ccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHH---Hc-CCCC-----CC
Confidence 222 2223456788999999999999999999999999999999 99999766554433221 11 1111 11
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 647 GSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 647 ~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
...++ ..+.+++.+||+.||++||++.+|++.|+++..
T Consensus 276 ~~~~~----~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~ 313 (325)
T 3kul_A 276 PMGCP----HALHQLMLDCWHKDRAQRPRFSQIVSVLDALIR 313 (325)
T ss_dssp CTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCcC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 11223 348899999999999999999999999997644
No 26
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.3e-43 Score=375.72 Aligned_cols=252 Identities=23% Similarity=0.376 Sum_probs=200.9
Q ss_pred HhhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
...++|...+.||+|+||.||+|+ ..+|+.||||++.... ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 7 ~l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv 86 (347)
T 3zgw_A 7 ELLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMV 86 (347)
T ss_dssp TTTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEE
Confidence 345789999999999999999999 4689999999986543 23345789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++|+|.+++.... .+++..+..++.||+.||+|||+.| |+||||||+||++++++.+||+|||++.......
T Consensus 87 ~E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~ 162 (347)
T 3zgw_A 87 LEYCPGGELFDYIISQD-RLSEEETRVVFRQIVSAVAYVHSQG---YAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNK 162 (347)
T ss_dssp EECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBC-----
T ss_pred EeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCccHHHEEEcCCCCEEEEeccCcccccCCC
Confidence 99999999999997554 6999999999999999999999997 9999999999999999999999999998655444
Q ss_pred cceeeccccCccCCchHhhhcCCC-CcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHL-TEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
.......+||+.|+|||++.+..+ +.++||||+||++|||++|+.||...+........ .. +.. .....
T Consensus 163 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i---~~-~~~------~~p~~ 232 (347)
T 3zgw_A 163 DYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVMALYKKI---MR-GKY------DVPKW 232 (347)
T ss_dssp ---------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH-TCC------CCCTT
T ss_pred CccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---Hc-CCC------CCCCC
Confidence 333455689999999999988775 89999999999999999999999776554433221 11 110 01112
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.++ .+.+++.+||+.||++|||+.|+++.
T Consensus 233 ~s~----~~~~li~~~L~~dP~~Rps~~eil~h 261 (347)
T 3zgw_A 233 LSP----SSILLLQQMLQVDPKKRISMKNLLNH 261 (347)
T ss_dssp CCH----HHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred CCH----HHHHHHHHHcccCHhHCcCHHHHhcC
Confidence 233 37889999999999999999999864
No 27
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=9.6e-43 Score=360.58 Aligned_cols=258 Identities=26% Similarity=0.418 Sum_probs=216.8
Q ss_pred hhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
..++|...+.||+|+||.||+|...++..||+|.+.... ...+++.+|++++++++||||+++++++.+++..++||||
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (268)
T 3sxs_A 6 KREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEY 84 (268)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred chhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEc
Confidence 346788999999999999999998888899999997543 3457799999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcce
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHI 573 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~ 573 (756)
+++|+|.+++......+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++.........
T Consensus 85 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~ 161 (268)
T 3sxs_A 85 ISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVS 161 (268)
T ss_dssp CTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEE
T ss_pred cCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCcceEEECCCCCEEEccCccceecchhhhhc
Confidence 9999999999876667999999999999999999999997 9999999999999999999999999998766554444
Q ss_pred eeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCH
Q 004400 574 STRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDK 652 (756)
Q Consensus 574 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (756)
.....+|+.|+|||.+.+..++.++||||||+++|||++ |+.||........... ... ..... .....+
T Consensus 162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~---~~~-~~~~~-----~~~~~~- 231 (268)
T 3sxs_A 162 SVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLK---VSQ-GHRLY-----RPHLAS- 231 (268)
T ss_dssp CCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHH---HHT-TCCCC-----CCTTSC-
T ss_pred ccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHH---HHc-CCCCC-----CCCcCh-
Confidence 444567788999999999899999999999999999999 9999966554332211 111 11100 111122
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 653 EQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 653 ~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
..+.+++.+||+.+|++|||+.|+++.|+.+.+
T Consensus 232 ---~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 232 ---DTIYQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp ---HHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred ---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 348899999999999999999999999997654
No 28
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=4.7e-43 Score=380.12 Aligned_cols=258 Identities=27% Similarity=0.442 Sum_probs=211.5
Q ss_pred hcCccccCcccCCCCccEEEeec--------cCCcEEEEEEccccC-cccHHHHHHHHHHHHhC-CCCceeeEeeEEEeC
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL--------ADGTAIAVKQLSSKS-KQGNREFINEIGMISAL-QHPNLVKLYGCCIEG 484 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 484 (756)
.++|...+.||+|+||.||+|+. .++..||||.++... ....+.+.+|+++++++ +||||++++++|.++
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 46788999999999999999974 245679999997643 23446789999999999 899999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe
Q 004400 485 NQLLLIYEYLENNSLARALFEHR---------------LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL 549 (756)
Q Consensus 485 ~~~~lV~e~~~~gsL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill 549 (756)
+..++||||+++|+|.+++.... ..+++..+..++.||+.||+|||+++ |+||||||+|||+
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchhhEEE
Confidence 99999999999999999998543 35899999999999999999999997 9999999999999
Q ss_pred cCCCCEEEccCCccccCcccCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHH
Q 004400 550 DKDLNSKISDFGLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLD 627 (756)
Q Consensus 550 ~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~ 627 (756)
+.++.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||++ |+.||..........
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~ 316 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 316 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHH
T ss_pred CCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence 99999999999999865443222 2233567889999999999999999999999999999999 999997655433322
Q ss_pred HHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 628 WALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
. . ..+..... ...+ ...+.+++.+||+.||++||++.|+++.|+.+..
T Consensus 317 ~---~-~~~~~~~~-----~~~~----~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~ 364 (370)
T 2psq_A 317 L---L-KEGHRMDK-----PANC----TNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT 364 (370)
T ss_dssp H---H-HTTCCCCC-----CTTS----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred H---H-hcCCCCCC-----CCCC----CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 1 1 11111111 1122 2348899999999999999999999999997644
No 29
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=1.4e-42 Score=369.72 Aligned_cols=249 Identities=25% Similarity=0.380 Sum_probs=208.5
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
..++|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+++++.++||||+++++++.+++..++|
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 92 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence 346899999999999999999995 68999999998654 233456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++|+|.+++... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++......
T Consensus 93 ~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 168 (328)
T 3fe3_A 93 MEYASGGEVFDYLVAH-GRMKEKEARSKFRQIVSAVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG 168 (328)
T ss_dssp ECCCTTCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC
T ss_pred EECCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCCHHHEEEcCCCCEEEeeccCceecCCCC
Confidence 9999999999999765 46999999999999999999999997 9999999999999999999999999998654432
Q ss_pred cceeeccccCccCCchHhhhcCCCC-cccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLT-EKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
. ....+||+.|+|||++.+..+. .++||||+||++|||++|+.||...+........ .. +.. .....
T Consensus 169 ~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i---~~-~~~------~~p~~ 236 (328)
T 3fe3_A 169 K--LDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERV---LR-GKY------RIPFY 236 (328)
T ss_dssp G--GGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH-CCC------CCCTT
T ss_pred c--cccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHH---Hh-CCC------CCCCC
Confidence 2 3456799999999999987765 7999999999999999999999776654433211 11 111 01111
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.+ ..+.+++.+|++.||.+|||+.|+++.
T Consensus 237 ~s----~~~~~li~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 237 MS----TDCENLLKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp SC----HHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred CC----HHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 22 348899999999999999999999874
No 30
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=6.4e-43 Score=369.58 Aligned_cols=260 Identities=29% Similarity=0.468 Sum_probs=204.7
Q ss_pred hhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
..++|+..+.||+|+||.||+|+. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+++..++||
T Consensus 35 ~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 113 (309)
T 3p86_A 35 PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVT 113 (309)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEE
T ss_pred ChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEE
Confidence 456889999999999999999986 58899999987643 233467899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 492 EYLENNSLARALFEHR--LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~--~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
||+++|+|.+++.... ..+++..+..++.|++.||+|||+.| ++|+||||||+||+++.++.+||+|||+++.....
T Consensus 114 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~-~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~ 192 (309)
T 3p86_A 114 EYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRN-PPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAST 192 (309)
T ss_dssp ECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSS-SCCCCTTCCGGGEEECTTCCEEECCCC--------
T ss_pred ecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CCEECCCCChhhEEEeCCCcEEECCCCCCcccccc
Confidence 9999999999997543 23899999999999999999999884 34999999999999999999999999999854432
Q ss_pred CcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 570 NTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||...+........ ........ ....
T Consensus 193 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~---~~~~~~~~-----~~~~ 263 (309)
T 3p86_A 193 FL-SSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAV---GFKCKRLE-----IPRN 263 (309)
T ss_dssp ----------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHH---HHSCCCCC-----CCTT
T ss_pred cc-ccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---HhcCCCCC-----CCcc
Confidence 22 233467999999999999999999999999999999999999999766544333221 11111111 1112
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
++ ..+.+++.+||+.||.+|||+.++++.|+.+..
T Consensus 264 ~~----~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~ 298 (309)
T 3p86_A 264 LN----PQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIK 298 (309)
T ss_dssp SC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred CC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 23 348899999999999999999999999997654
No 31
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.7e-42 Score=361.27 Aligned_cols=261 Identities=25% Similarity=0.351 Sum_probs=207.8
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccC---cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKS---KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|+ ..+++.||+|.+.... ....+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 3578999999999999999999 4578999999985432 23346789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++|+|.+++... ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++......
T Consensus 90 ~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 165 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESH-GPLSVDTAINFTNQILDGIKHAHDMR---IVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS 165 (294)
T ss_dssp EECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCSSSTTC----
T ss_pred EeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEEeCCCcccccccc
Confidence 9999999999999755 37999999999999999999999997 9999999999999999999999999998766544
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
........||+.|+|||.+.+..++.++||||||+++|||++|+.||.......... .... ...... ........
T Consensus 166 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~---~~~~-~~~~~~-~~~~~~~~ 240 (294)
T 4eqm_A 166 LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAI---KHIQ-DSVPNV-TTDVRKDI 240 (294)
T ss_dssp ---------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHH---HHHS-SCCCCH-HHHSCTTS
T ss_pred ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHH---HHhh-ccCCCc-chhcccCC
Confidence 444455679999999999999999999999999999999999999997665433211 1111 111111 01111222
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCC-CHHHHHHHhccCcc
Q 004400 651 DKEQVMVMINVALLCANASPTIRP-SMSSVLRMLECGVD 688 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RP-t~~ev~~~L~~~~~ 688 (756)
+ ..+.+++.+|++.||.+|| ++.++.+.|+.+..
T Consensus 241 ~----~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 241 P----QSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp C----HHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred C----HHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 3 3488999999999999999 99999999987644
No 32
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=9.6e-42 Score=360.49 Aligned_cols=274 Identities=37% Similarity=0.632 Sum_probs=223.0
Q ss_pred hhhHHHhhcCcccc------CcccCCCCccEEEeeccCCcEEEEEEccccC----cccHHHHHHHHHHHHhCCCCceeeE
Q 004400 408 YLQIKAATNNFATD------NNIGEGGFGPVYKGLLADGTAIAVKQLSSKS----KQGNREFINEIGMISALQHPNLVKL 477 (756)
Q Consensus 408 ~~~~~~~~~~~~~~------~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l 477 (756)
+.++..++++|... +.||+|+||.||+|.. +++.||||++.... ....+.+.+|+.++++++||||+++
T Consensus 17 ~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 95 (307)
T 2nru_A 17 FYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVEL 95 (307)
T ss_dssp HHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred HHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 56788888888887 8999999999999987 57899999986532 2335678999999999999999999
Q ss_pred eeEEEeCCeEEEEEEecCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCE
Q 004400 478 YGCCIEGNQLLLIYEYLENNSLARALFE--HRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNS 555 (756)
Q Consensus 478 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~--~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~ 555 (756)
++++.+++..++||||+++|+|.+++.. ....+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+
T Consensus 96 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~ 172 (307)
T 2nru_A 96 LGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENH---HIHRDIKSANILLDEAFTA 172 (307)
T ss_dssp EEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCE
T ss_pred EEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecCCCCHHHEEEcCCCcE
Confidence 9999999999999999999999999973 2346999999999999999999999997 9999999999999999999
Q ss_pred EEccCCccccCcccCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhh-HHHHHHHHH
Q 004400 556 KISDFGLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFY-LLDWALVLK 633 (756)
Q Consensus 556 kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~-~~~~~~~~~ 633 (756)
||+|||+++........ ......||+.|+|||.+.+ .++.++||||||+++|+|++|+.||....... ...+.....
T Consensus 173 kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~ 251 (307)
T 2nru_A 173 KISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIE 251 (307)
T ss_dssp EECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHH
T ss_pred EEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhh
Confidence 99999999865543222 2334679999999998864 58899999999999999999999996543322 222222222
Q ss_pred h-cCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 634 E-QGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 634 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
. .....+.++... ...+......+.+++.+||+.+|.+||++.+|++.|+++.
T Consensus 252 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~ 305 (307)
T 2nru_A 252 DEEKTIEDYIDKKM-NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 305 (307)
T ss_dssp TTSCCHHHHSCSSC-SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC
T ss_pred hhhhhhhhhccccc-cccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence 2 122223333322 3456667778999999999999999999999999998653
No 33
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=8.8e-43 Score=378.21 Aligned_cols=258 Identities=27% Similarity=0.473 Sum_probs=201.6
Q ss_pred hcCccccCcccCCCCccEEEeecc----CCcEEEEEEcccc-CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLA----DGTAIAVKQLSSK-SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 489 (756)
.++|...+.||+|+||.||+|+.. ++..||||.++.. .....+.|.+|+.++++++||||+++++++.+++..++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 457899999999999999999854 5778999999764 23345679999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 490 IYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
||||+++|+|.+++......+++..+..++.||+.||+|||+.+ |+||||||+|||++.++.+||+|||+++.....
T Consensus 124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 200 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGRVLEDD 200 (373)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEEcCCCCEEECcCccccccccC
Confidence 99999999999999877778999999999999999999999996 999999999999999999999999999876543
Q ss_pred Ccce--eeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCC
Q 004400 570 NTHI--STRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNP 646 (756)
Q Consensus 570 ~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (756)
.... .....+|+.|+|||++.+..++.++|||||||++|||++ |+.||............ ..+.. ...
T Consensus 201 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i----~~~~~-----~~~ 271 (373)
T 2qol_A 201 PEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAV----DEGYR-----LPP 271 (373)
T ss_dssp -------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHH----HTTEE-----CCC
T ss_pred CccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH----HcCCC-----CCC
Confidence 2221 122345788999999999999999999999999999998 99999765544332211 11111 011
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 647 GSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 647 ~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.... ...+.+++.+||+.||++||++.+|++.|+.+..
T Consensus 272 ~~~~----~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~ 309 (373)
T 2qol_A 272 PMDC----PAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIR 309 (373)
T ss_dssp CTTC----BHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred Cccc----cHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHh
Confidence 1122 2348899999999999999999999999987644
No 34
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=1.7e-42 Score=361.71 Aligned_cols=257 Identities=24% Similarity=0.398 Sum_probs=212.2
Q ss_pred hhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
..++|...+.||+|+||.||+|...++..||+|++.... ...+++.+|++++++++||||+++++++.+++..++||||
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 100 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 100 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence 346788899999999999999998888899999997543 3457799999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcce
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHI 573 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~ 573 (756)
+++|+|.+++......+++..+..++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++.........
T Consensus 101 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~ 177 (283)
T 3gen_A 101 MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTS 177 (283)
T ss_dssp CTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHS
T ss_pred cCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCccceEEEcCCCCEEEcccccccccccccccc
Confidence 9999999999875668999999999999999999999997 9999999999999999999999999998665443333
Q ss_pred eeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCH
Q 004400 574 STRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDK 652 (756)
Q Consensus 574 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (756)
.....+|+.|+|||.+.+..++.++||||||+++|||++ |+.||........... ... .. ........+
T Consensus 178 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~---~~~-~~-----~~~~~~~~~- 247 (283)
T 3gen_A 178 SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEH---IAQ-GL-----RLYRPHLAS- 247 (283)
T ss_dssp TTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHH---HHT-TC-----CCCCCTTCC-
T ss_pred ccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHH---Hhc-cc-----CCCCCCcCC-
Confidence 334557889999999999999999999999999999998 9999976554332221 111 11 011111222
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 653 EQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 653 ~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
..+.+++.+||+.+|.+|||+.|+++.|+++.
T Consensus 248 ---~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~ 279 (283)
T 3gen_A 248 ---EKVYTIMYSCWHEKADERPTFKILLSNILDVM 279 (283)
T ss_dssp ---HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHccCChhHCcCHHHHHHHHHHHh
Confidence 34889999999999999999999999998654
No 35
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=5.9e-42 Score=364.32 Aligned_cols=248 Identities=25% Similarity=0.420 Sum_probs=207.4
Q ss_pred ccccCcccCCCCccEEEeecc-CCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEecCC
Q 004400 418 FATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLEN 496 (756)
Q Consensus 418 ~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~ 496 (756)
|+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++||||+++++++..++..++||||+++
T Consensus 47 ~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 126 (321)
T 2c30_A 47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQG 126 (321)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCS
T ss_pred hhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCC
Confidence 677789999999999999954 7999999999776666677899999999999999999999999999999999999999
Q ss_pred CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcceeec
Q 004400 497 NSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHISTR 576 (756)
Q Consensus 497 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~ 576 (756)
|+|.+++.. ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++........ ...
T Consensus 127 ~~L~~~l~~--~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~-~~~ 200 (321)
T 2c30_A 127 GALTDIVSQ--VRLNEEQIATVCEAVLQALAYLHAQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK-RKS 200 (321)
T ss_dssp CBHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC-BCC
T ss_pred CCHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCcEEEeeeeeeeecccCccc-ccc
Confidence 999998854 36999999999999999999999996 999999999999999999999999999865543222 234
Q ss_pred cccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHHHHH
Q 004400 577 VAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQVM 656 (756)
Q Consensus 577 ~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (756)
..||+.|+|||++.+..++.++||||||+++|||++|+.||............ .. ...... ........
T Consensus 201 ~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~---~~-~~~~~~-------~~~~~~~~ 269 (321)
T 2c30_A 201 LVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRL---RD-SPPPKL-------KNSHKVSP 269 (321)
T ss_dssp CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH---HH-SSCCCC-------TTGGGSCH
T ss_pred ccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---hc-CCCCCc-------CccccCCH
Confidence 67999999999999999999999999999999999999999766544332211 11 111000 00111223
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 657 VMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 657 ~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.+.+++.+||+.||++|||+.|+++.
T Consensus 270 ~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 270 VLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp HHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHHHccCChhhCcCHHHHhcC
Confidence 48899999999999999999999874
No 36
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=9.8e-43 Score=383.71 Aligned_cols=263 Identities=20% Similarity=0.249 Sum_probs=215.9
Q ss_pred hhhHHHhhcCccccCcccCCCCccEEEeecc-CCcEEEEEEccccC---cccHHHHHHHHHHHHhCCCCceeeEeeEEEe
Q 004400 408 YLQIKAATNNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKS---KQGNREFINEIGMISALQHPNLVKLYGCCIE 483 (756)
Q Consensus 408 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 483 (756)
+.+++...++|+..+.||+|+||+||+|+.. +++.||||++.+.. ......+.+|+.++..++||||++++++|.+
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 145 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD 145 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence 4566677899999999999999999999954 58899999986531 1222348899999999999999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCcc
Q 004400 484 GNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLA 563 (756)
Q Consensus 484 ~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla 563 (756)
++..|+|||||++|+|.+++......+++..+..++.||+.||+|||+.+ ||||||||+|||++.++.+||+|||+|
T Consensus 146 ~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILl~~~g~vkL~DFGla 222 (437)
T 4aw2_A 146 DNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSC 222 (437)
T ss_dssp SSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeeEcCCCCEEEcchhhh
Confidence 99999999999999999999876668999999999999999999999997 999999999999999999999999999
Q ss_pred ccCcccCcceeeccccCccCCchHhhh-----cCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcc
Q 004400 564 KLDEEENTHISTRVAGTIGYMAPEYAM-----RGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKL 638 (756)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 638 (756)
+.............+||+.|+|||++. ...++.++|||||||++|||++|+.||...+..............-..
T Consensus 223 ~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~ 302 (437)
T 4aw2_A 223 LKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQF 302 (437)
T ss_dssp EECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCC
T ss_pred hhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccC
Confidence 876655554455578999999999997 456899999999999999999999999877655443322111111111
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCC--CCCHHHHHHH
Q 004400 639 MELVDTNPGSNFDKEQVMVMINVALLCANASPTI--RPSMSSVLRM 682 (756)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~--RPt~~ev~~~ 682 (756)
. ......+. .+.+++.+|+..+|++ ||+++|+++.
T Consensus 303 p-----~~~~~~s~----~~~dLi~~lL~~~~~r~~r~~~~eil~H 339 (437)
T 4aw2_A 303 P-----TQVTDVSE----NAKDLIRRLICSREHRLGQNGIEDFKKH 339 (437)
T ss_dssp C-----SSCCCSCH----HHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred C-----cccccCCH----HHHHHHHHHhcccccccCCCCHHHHhCC
Confidence 1 11112333 3888999999888888 9999999764
No 37
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=4.5e-43 Score=373.24 Aligned_cols=266 Identities=26% Similarity=0.334 Sum_probs=205.2
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC----eEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGN----QLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~lV 490 (756)
.++|+..+.||+|+||.||+|+.. ++.||||++.... .....+.+|+.++++++|||||++++++.++. ..++|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 467889999999999999999875 7899999996542 23345667999999999999999999998743 47999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcC----------CCCCeEcCCCCCCceEecCCCCEEEccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGE----------SRIKVVHRDIKATNVLLDKDLNSKISDF 560 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~----------g~~~iiH~Dikp~Nill~~~~~~kl~DF 560 (756)
|||+++|+|.+++... .+++..+..++.|++.||+|||+. + |+||||||+|||++.++.+||+||
T Consensus 101 ~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~---ivH~Dlkp~Nill~~~~~~kL~DF 175 (322)
T 3soc_A 101 TAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA---ISHRDIKSKNVLLKNNLTACIADF 175 (322)
T ss_dssp EECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE---EECSCCSGGGEEECTTCCEEECCC
T ss_pred EecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCC---EEeCCCChHhEEECCCCeEEEccC
Confidence 9999999999999754 589999999999999999999987 6 999999999999999999999999
Q ss_pred CccccCcccCcc-eeeccccCccCCchHhhhcC-----CCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHh
Q 004400 561 GLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRG-----HLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKE 634 (756)
Q Consensus 561 Gla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 634 (756)
|+++........ ......||+.|+|||++.+. .++.++|||||||++|||++|+.||..........+......
T Consensus 176 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~ 255 (322)
T 3soc_A 176 GLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQ 255 (322)
T ss_dssp TTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCS
T ss_pred CcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhcc
Confidence 999765543322 23346799999999999863 456789999999999999999999965432111111111000
Q ss_pred cCccc--------cccccCCCCC-CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 635 QGKLM--------ELVDTNPGSN-FDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 635 ~~~~~--------~~~~~~~~~~-~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
..... ....+..... ........+.+++.+||+.||++|||+.||++.|+++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~ 317 (322)
T 3soc_A 256 HPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQ 317 (322)
T ss_dssp SCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 00000 0000000000 11234556999999999999999999999999998654
No 38
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=3.4e-43 Score=382.47 Aligned_cols=257 Identities=26% Similarity=0.412 Sum_probs=211.3
Q ss_pred hhcCccccCcccCCCCccEEEeecc-CCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
..++|...+.||+|+||.||+|+.. +++.||||.++... ....+.|.+|++++++++|||||+++++|.+++..++||
T Consensus 112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 191 (377)
T 3cbl_A 112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM 191 (377)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence 3467889999999999999999964 78999999987542 223356889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
||+++|+|.+++......+++..+..++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++.......
T Consensus 192 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~ 268 (377)
T 3cbl_A 192 ELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREEADGVY 268 (377)
T ss_dssp ECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEECTTSEE
T ss_pred EcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---cCCcccCHHHEEEcCCCcEEECcCCCceecCCCce
Confidence 999999999999876667999999999999999999999997 99999999999999999999999999986443221
Q ss_pred cee-eccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 572 HIS-TRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 572 ~~~-~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
... ....+++.|+|||.+..+.++.++|||||||++|||++ |+.||............ ..+..... ...
T Consensus 269 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~----~~~~~~~~-----~~~ 339 (377)
T 3cbl_A 269 AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFV----EKGGRLPC-----PEL 339 (377)
T ss_dssp ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHH----HTTCCCCC-----CTT
T ss_pred eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH----HcCCCCCC-----CCC
Confidence 111 12345778999999999999999999999999999998 99999765543332211 11111111 112
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccC
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECG 686 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~ 686 (756)
++ ..+.+++.+||+.||++|||+.++++.|+.+
T Consensus 340 ~~----~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 372 (377)
T 3cbl_A 340 CP----DAVFRLMEQCWAYEPGQRPSFSTIYQELQSI 372 (377)
T ss_dssp CC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CC----HHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence 22 3488999999999999999999999999865
No 39
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=5.1e-42 Score=366.50 Aligned_cols=262 Identities=19% Similarity=0.213 Sum_probs=211.0
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e 492 (756)
.++|...+.||+|+||.||+|. ..+++.||||.+..... ...+.+|+++++++ +||||+++++++.+++..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 4678999999999999999999 46789999999865432 34688999999999 99999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC-----EEEccCCccccCc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN-----SKISDFGLAKLDE 567 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~-----~kl~DFGla~~~~ 567 (756)
|+ +++|.+++......+++..+..++.|++.||+|||+.+ |+||||||+|||++.++. +||+|||+++...
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~ 161 (330)
T 2izr_A 86 LL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKN---LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYI 161 (330)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESB
T ss_pred eC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeeccCCCCCCceEEEEEcccceeee
Confidence 99 99999999876678999999999999999999999997 999999999999998887 9999999998654
Q ss_pred ccCcc------eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccc
Q 004400 568 EENTH------ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMEL 641 (756)
Q Consensus 568 ~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (756)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.......................
T Consensus 162 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~- 240 (330)
T 2izr_A 162 DPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATP- 240 (330)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSC-
T ss_pred cCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCC-
Confidence 43221 12456799999999999999999999999999999999999999976433222221111111000000
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCccc
Q 004400 642 VDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDV 689 (756)
Q Consensus 642 ~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~ 689 (756)
.......+ + .+.+++.+||+.||.+||++.+|++.|+.....
T Consensus 241 -~~~~~~~~----p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~ 282 (330)
T 2izr_A 241 -IEVLCENF----P-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 282 (330)
T ss_dssp -HHHHTTTC----H-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred -HHHHhccC----h-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 00000011 1 488999999999999999999999999866443
No 40
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=3.3e-42 Score=373.18 Aligned_cols=269 Identities=19% Similarity=0.231 Sum_probs=208.7
Q ss_pred hhcCccccCcccCCCCccEEEeeccC------CcEEEEEEccccCcc-----------cHHHHHHHHHHHHhCCCCceee
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLAD------GTAIAVKQLSSKSKQ-----------GNREFINEIGMISALQHPNLVK 476 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv~ 476 (756)
..++|...+.||+|+||.||+|...+ ++.||||++...... ....+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 45689999999999999999998654 478999998654321 1123445666777888999999
Q ss_pred EeeEEEeC----CeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEec--
Q 004400 477 LYGCCIEG----NQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLD-- 550 (756)
Q Consensus 477 l~~~~~~~----~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~-- 550 (756)
+++++.+. ...++||||+ +++|.+++......+++..+..++.||+.||+|||+.+ |+||||||+|||++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~---iiHrDlkp~Nill~~~ 188 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHE---YVHGDIKASNLLLNYK 188 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEESS
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eEEecCCHHHEEEecC
Confidence 99999875 5589999999 99999999877678999999999999999999999996 99999999999999
Q ss_pred CCCCEEEccCCccccCcccCcce------eeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchh-
Q 004400 551 KDLNSKISDFGLAKLDEEENTHI------STRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMF- 623 (756)
Q Consensus 551 ~~~~~kl~DFGla~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~- 623 (756)
.++.+||+|||+++......... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......
T Consensus 189 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~ 268 (364)
T 3op5_A 189 NPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDP 268 (364)
T ss_dssp CTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH
T ss_pred CCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCH
Confidence 88999999999998665432221 13356999999999999999999999999999999999999999643221
Q ss_pred hHHHHHHHHHhcCccccccccCCC-CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCccccc
Q 004400 624 YLLDWALVLKEQGKLMELVDTNPG-SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDVLD 691 (756)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~~~ 691 (756)
....+.. .........+++.... ..++. .+.+++..||+.+|.+||++.+|++.|+.+.....
T Consensus 269 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~ 332 (364)
T 3op5_A 269 KYVRDSK-IRYRENIASLMDKCFPAANAPG----EIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIG 332 (364)
T ss_dssp HHHHHHH-HHHHHCHHHHHHHHSCTTCCCH----HHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHhhhhHHHHHHHhcccccCHH----HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 1111111 1111223333333221 22333 48899999999999999999999999987765443
No 41
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=1.5e-42 Score=386.86 Aligned_cols=259 Identities=28% Similarity=0.422 Sum_probs=214.6
Q ss_pred HhhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
...++|...+.||+|+||.||+|.+.++..||||.++... ...+.|.+|+.++++++|||||++++++. ++..++|||
T Consensus 185 i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e 262 (454)
T 1qcf_A 185 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITE 262 (454)
T ss_dssp CCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEC
T ss_pred echHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEe
Confidence 3456888999999999999999998888999999997643 45678999999999999999999999986 667899999
Q ss_pred ecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 493 YLENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 493 ~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
||++|+|.+++... ...+++..+..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.......
T Consensus 263 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~ 339 (454)
T 1qcf_A 263 FMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNEY 339 (454)
T ss_dssp CCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHH
T ss_pred ecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCce
Confidence 99999999999743 336899999999999999999999996 99999999999999999999999999987654322
Q ss_pred ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
.......+|+.|+|||++....++.++|||||||++|||++ |+.||............ . .+..... ...+
T Consensus 340 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i---~-~~~~~~~-----~~~~ 410 (454)
T 1qcf_A 340 TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRAL---E-RGYRMPR-----PENC 410 (454)
T ss_dssp HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHH---H-HTCCCCC-----CTTS
T ss_pred eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHH---H-cCCCCCC-----CCCC
Confidence 22333457889999999999999999999999999999999 99999766544333221 1 1111111 1122
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCccc
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDV 689 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~ 689 (756)
+ ..+.+++.+||+.||++|||+.+|++.|+.+...
T Consensus 411 ~----~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~ 445 (454)
T 1qcf_A 411 P----EELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA 445 (454)
T ss_dssp C----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred C----HHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence 3 3488999999999999999999999999987553
No 42
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=7.2e-42 Score=365.16 Aligned_cols=249 Identities=26% Similarity=0.316 Sum_probs=207.7
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|+..+.||+|+||.||+|+. .+|+.||+|++++. .......+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 35789999999999999999994 57999999999753 233456789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++|+|.+++... ..+++..+..++.||+.||+|||++| |+||||||+|||++.++.+||+|||+++......
T Consensus 84 ~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~ 159 (337)
T 1o6l_A 84 MEYANGGELFFHLSRE-RVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG 159 (337)
T ss_dssp EECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred EeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCCHHHEEECCCCCEEEeeccchhhcccCC
Confidence 9999999999999754 47899999999999999999999997 9999999999999999999999999998543322
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
. .....+||+.|+|||++.+..++.++|||||||++|||++|+.||...+........ .. ... . ....+
T Consensus 160 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i---~~-~~~-~-----~p~~~ 228 (337)
T 1o6l_A 160 A-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELI---LM-EEI-R-----FPRTL 228 (337)
T ss_dssp C-CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH-CCC-C-----CCTTS
T ss_pred C-cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHH---Hc-CCC-C-----CCCCC
Confidence 2 234568999999999999999999999999999999999999999776544333211 11 110 0 11122
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCC-----CHHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRP-----SMSSVLRM 682 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RP-----t~~ev~~~ 682 (756)
+ ..+.+++.+|++.||++|| ++.|+++.
T Consensus 229 s----~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h 261 (337)
T 1o6l_A 229 S----PEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261 (337)
T ss_dssp C----HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred C----HHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence 3 3488999999999999999 89998754
No 43
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4e-42 Score=365.41 Aligned_cols=252 Identities=16% Similarity=0.251 Sum_probs=209.0
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
.++|...+.||+|+||.||+|.. .+++.||+|.+... ......+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 46889999999999999999994 56889999998754 33446788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC--CCCEEEccCCccccCcccCc
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK--DLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~--~~~~kl~DFGla~~~~~~~~ 571 (756)
+++|+|.+++......+++..+..++.|++.||+|||+.| |+||||||+|||++. ++.+||+|||+++.......
T Consensus 83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~g---ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~ 159 (321)
T 1tki_A 83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN 159 (321)
T ss_dssp CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCE
T ss_pred CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCc
Confidence 9999999999776668999999999999999999999997 999999999999987 78999999999987654332
Q ss_pred ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFD 651 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (756)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||............. ....... .......
T Consensus 160 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~--~~~~~~~----~~~~~~~- 230 (321)
T 1tki_A 160 --FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIM--NAEYTFD----EEAFKEI- 230 (321)
T ss_dssp --EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHH--HTCCCCC----HHHHTTS-
T ss_pred --cccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHH--cCCCCCC----hhhhccC-
Confidence 234679999999999998889999999999999999999999997765543332111 1110000 0000112
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 652 KEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 652 ~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
...+.+++.+|++.||++|||+.|+++.
T Consensus 231 ---s~~~~~li~~~L~~dp~~Rpt~~e~l~h 258 (321)
T 1tki_A 231 ---SIEAMDFVDRLLVKERKSRMTASEALQH 258 (321)
T ss_dssp ---CHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ---CHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 2348899999999999999999999874
No 44
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=2.7e-43 Score=370.14 Aligned_cols=262 Identities=26% Similarity=0.388 Sum_probs=207.5
Q ss_pred hcCccccCcccCCCCccEEEeec-----cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeC--CeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-----ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEG--NQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~ 487 (756)
.++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++... ...
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 46788999999999999999983 36889999999876666667899999999999999999999998654 558
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
++||||+++|+|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~ 165 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLP 165 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCSCC---
T ss_pred EEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHhhEEEcCCCeEEEccCccccccc
Confidence 9999999999999999877667999999999999999999999986 9999999999999999999999999998765
Q ss_pred ccCcc--eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhH------------HHHHHHHH
Q 004400 568 EENTH--ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYL------------LDWALVLK 633 (756)
Q Consensus 568 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~------------~~~~~~~~ 633 (756)
..... ......||..|+|||.+.+..++.++||||||+++|||++|..|+........ ........
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (295)
T 3ugc_A 166 QDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELL 245 (295)
T ss_dssp ----------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHH
T ss_pred CCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHH
Confidence 43321 22334578889999999999999999999999999999999999854321100 00000011
Q ss_pred hcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 634 EQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
..... ...+......+.+++.+||+.||++|||+.|+++.|+.+.+
T Consensus 246 ~~~~~---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~ 291 (295)
T 3ugc_A 246 KNNGR---------LPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 291 (295)
T ss_dssp HTTCC---------CCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hccCc---------CCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence 11111 11112223458899999999999999999999999986543
No 45
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=2e-41 Score=358.57 Aligned_cols=262 Identities=24% Similarity=0.335 Sum_probs=205.8
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCc--ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSK--QGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
.++|...+.||+|+||+||+|+..+|+.||+|++..... .....+.+|++++++++||||+++++++.+++..++|||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 468899999999999999999988899999999875422 234678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTH 572 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~ 572 (756)
|+++ +|.+.+......+++..+..++.|++.||+|||+.| |+||||||+|||++.++.+||+|||+++........
T Consensus 100 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~ 175 (311)
T 3niz_A 100 FMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRS 175 (311)
T ss_dssp CCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC-
T ss_pred CCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCchHhEEECCCCCEEEccCcCceecCCCccc
Confidence 9985 888888877777999999999999999999999997 999999999999999999999999999865433222
Q ss_pred eeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccc----------
Q 004400 573 ISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMEL---------- 641 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------- 641 (756)
.....||+.|+|||++.+ ..++.++||||+||++|||++|+.||........................
T Consensus 176 -~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 254 (311)
T 3niz_A 176 -YTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWK 254 (311)
T ss_dssp ---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHH
T ss_pred -ccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhh
Confidence 234578999999999876 56899999999999999999999999765544433322222211111000
Q ss_pred ------cccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 642 ------VDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 642 ------~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
..........+.....+.+++.+|++.||++|||+.|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 255 QRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp SCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0000000000111235789999999999999999999987
No 46
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=376.96 Aligned_cols=258 Identities=28% Similarity=0.421 Sum_probs=210.5
Q ss_pred hcCccccCcccCCCCccEEEeecc------CCcEEEEEEcccc-CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLA------DGTAIAVKQLSSK-SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 487 (756)
.++|...+.||+|+||.||+|++. +++.||||++... .......+.+|+.++++++|||||++++++.++...
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 457889999999999999999843 4678999999654 334456789999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCC---CEEEc
Q 004400 488 LLIYEYLENNSLARALFEHR------LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDL---NSKIS 558 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~------~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~---~~kl~ 558 (756)
++||||+++|+|.+++.... ..+++.++..++.||+.||+|||++| |+||||||+|||++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEEecCCCCceEEEC
Confidence 99999999999999998543 45899999999999999999999997 99999999999999555 59999
Q ss_pred cCCccccCcccC-cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcC
Q 004400 559 DFGLAKLDEEEN-THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQG 636 (756)
Q Consensus 559 DFGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~ 636 (756)
|||+++...... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||............ ..+
T Consensus 227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i----~~~ 302 (367)
T 3l9p_A 227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV----TSG 302 (367)
T ss_dssp CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHH----HTT
T ss_pred CCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH----HcC
Confidence 999997543322 122334568999999999999999999999999999999998 99999766554433221 111
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 637 KLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.... ....++ ..+.+++.+||+.||++||++.+|++.|+....
T Consensus 303 ~~~~-----~~~~~~----~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~ 345 (367)
T 3l9p_A 303 GRMD-----PPKNCP----GPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 345 (367)
T ss_dssp CCCC-----CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCC-----CCccCC----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhh
Confidence 1111 111223 348899999999999999999999999986544
No 47
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-42 Score=377.87 Aligned_cols=262 Identities=20% Similarity=0.226 Sum_probs=213.1
Q ss_pred hhhHHHhhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC---cccHHHHHHHHHHHHhCCCCceeeEeeEEEe
Q 004400 408 YLQIKAATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS---KQGNREFINEIGMISALQHPNLVKLYGCCIE 483 (756)
Q Consensus 408 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 483 (756)
+.+.+...++|+..+.||+|+||.||+|+. .+|+.||||++.+.. ....+.+.+|..++..++||||++++++|.+
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 132 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD 132 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence 345566788999999999999999999995 579999999996531 2233458889999999999999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCcc
Q 004400 484 GNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLA 563 (756)
Q Consensus 484 ~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla 563 (756)
++..|+||||+++|+|.+++...+..+++..+..++.||+.||+|||+.+ ||||||||+|||++.++.+||+|||++
T Consensus 133 ~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILld~~g~vkL~DFGla 209 (412)
T 2vd5_A 133 ENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLG---YVHRDIKPDNILLDRCGHIRLADFGSC 209 (412)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccCHHHeeecCCCCEEEeechhh
Confidence 99999999999999999999876668999999999999999999999997 999999999999999999999999999
Q ss_pred ccCcccCcceeeccccCccCCchHhhh-------cCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcC
Q 004400 564 KLDEEENTHISTRVAGTIGYMAPEYAM-------RGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQG 636 (756)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~ 636 (756)
+.............+||+.|+|||++. ...++.++|||||||++|||++|+.||...+...............
T Consensus 210 ~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~ 289 (412)
T 2vd5_A 210 LKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHL 289 (412)
T ss_dssp EECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHC
T ss_pred eeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCc
Confidence 876654444444568999999999997 3568999999999999999999999997766544332221111111
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCC---CCHHHHHHH
Q 004400 637 KLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIR---PSMSSVLRM 682 (756)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~R---Pt~~ev~~~ 682 (756)
... .....++ ..+.+++.+|+. +|.+| |+++|+++.
T Consensus 290 ~~p-----~~~~~~s----~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H 328 (412)
T 2vd5_A 290 SLP-----LVDEGVP----EEARDFIQRLLC-PPETRLGRGGAGDFRTH 328 (412)
T ss_dssp CCC---------CCC----HHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred CCC-----ccccCCC----HHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence 111 0111233 348899999999 99998 589998754
No 48
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=3e-42 Score=377.01 Aligned_cols=259 Identities=20% Similarity=0.274 Sum_probs=212.9
Q ss_pred hhHHHhhcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeC
Q 004400 409 LQIKAATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEG 484 (756)
Q Consensus 409 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 484 (756)
.+++...++|...+.||+|+||+||+|+. .+++.||+|++.+. .......+.+|+.+++.++|||||+++++|.++
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~ 141 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD 141 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence 44556778999999999999999999995 46899999998652 122334588999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccc
Q 004400 485 NQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAK 564 (756)
Q Consensus 485 ~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~ 564 (756)
+..|+|||||++|+|.+++... .+++..+..++.||+.||+|||+.| |+||||||+|||++.++.+||+|||+++
T Consensus 142 ~~~~lV~E~~~gg~L~~~l~~~--~~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFG~a~ 216 (410)
T 3v8s_A 142 RYLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCM 216 (410)
T ss_dssp SEEEEEECCCTTEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred CEEEEEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeeECCCCCEEEeccceeE
Confidence 9999999999999999998653 6899999999999999999999997 9999999999999999999999999998
Q ss_pred cCcccCcceeeccccCccCCchHhhhcCC----CCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccc
Q 004400 565 LDEEENTHISTRVAGTIGYMAPEYAMRGH----LTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLME 640 (756)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 640 (756)
.............+||+.|+|||++.+.. ++.++|||||||++|||++|+.||...+..............- .
T Consensus 217 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~---~ 293 (410)
T 3v8s_A 217 KMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSL---T 293 (410)
T ss_dssp ECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHC---C
T ss_pred eeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccc---c
Confidence 76655444445678999999999998755 7899999999999999999999998776544333221111000 1
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhhcCCCCC--CCCHHHHHHH
Q 004400 641 LVDTNPGSNFDKEQVMVMINVALLCANASPTI--RPSMSSVLRM 682 (756)
Q Consensus 641 ~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~--RPt~~ev~~~ 682 (756)
.. ....++. .+.+++.+|++.+|.+ ||++.||++.
T Consensus 294 ~p---~~~~~s~----~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 294 FP---DDNDISK----EAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp CC---TTCCCCH----HHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred CC---CcccccH----HHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 11 1112333 4889999999999988 9999999865
No 49
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=3.5e-42 Score=387.51 Aligned_cols=257 Identities=25% Similarity=0.427 Sum_probs=214.6
Q ss_pred hhcCccccCcccCCCCccEEEeecc-CCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
...+|...+.||+|+||.||+|++. ++..||||.++... ...+.|.+|+.++++++|||||+++++|.+++..++|||
T Consensus 218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E 296 (495)
T 1opk_A 218 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 296 (495)
T ss_dssp CGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred CHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEE
Confidence 4567889999999999999999965 48899999997543 346789999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 493 YLENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 493 ~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
||++|+|.+++... ...+++..+..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.......
T Consensus 297 ~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 373 (495)
T 1opk_A 297 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTY 373 (495)
T ss_dssp CCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCEEECCTTCEECCTTCCE
T ss_pred ccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChhhEEECCCCcEEEeecccceeccCCce
Confidence 99999999999854 356899999999999999999999997 99999999999999999999999999987654433
Q ss_pred ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
.......+|+.|+|||++....++.++|||||||++|||++ |+.||...+........ ..+..... ...+
T Consensus 374 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~----~~~~~~~~-----~~~~ 444 (495)
T 1opk_A 374 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELL----EKDYRMER-----PEGC 444 (495)
T ss_dssp ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHH----HTTCCCCC-----CTTC
T ss_pred eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHH----HcCCCCCC-----CCCC
Confidence 33334557789999999999999999999999999999999 99999765543332211 11111111 1122
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
+ ..+.+++.+||+.||++|||+.+|++.|+.+.
T Consensus 445 ~----~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~ 477 (495)
T 1opk_A 445 P----EKVYELMRACWQWNPSDRPSFAEIHQAFETMF 477 (495)
T ss_dssp C----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred C----HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 2 34889999999999999999999999999764
No 50
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=9.7e-42 Score=367.54 Aligned_cols=252 Identities=22% Similarity=0.269 Sum_probs=207.5
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcc------cHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQ------GNREFINEIGMISALQHPNLVKLYGCCIEGNQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 487 (756)
.+.|...+.||+|+||.||+|+. .+|+.||+|.+...... ..+.+.+|+.++++++||||++++++|.+++..
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 46789999999999999999994 57899999998764321 346789999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCC----CEEEccCCcc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDL----NSKISDFGLA 563 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~----~~kl~DFGla 563 (756)
++||||+++|+|.+++... ..+++..+..++.||+.||+|||+.| |+||||||+||+++.++ .+||+|||++
T Consensus 91 ~lv~e~~~gg~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~~~vkl~DFG~a 166 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQK-ESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (361)
T ss_dssp EEEEECCCSCBHHHHHTTC-SCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCCSSC
T ss_pred EEEEEcCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEeCCCCCccCEEEEecCCc
Confidence 9999999999999999654 47999999999999999999999997 99999999999998877 7999999999
Q ss_pred ccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccc
Q 004400 564 KLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVD 643 (756)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (756)
+...... ......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+........ ........
T Consensus 167 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i--~~~~~~~~---- 238 (361)
T 2yab_A 167 HEIEDGV--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANI--TAVSYDFD---- 238 (361)
T ss_dssp EECCTTC--CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHH--HTTCCCCC----
T ss_pred eEcCCCC--ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH--HhcCCCCC----
Confidence 8655432 223467999999999999889999999999999999999999999776554433211 11100000
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 644 TNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 644 ~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
....... ...+.+++.+|+..||++|||+.|+++.
T Consensus 239 ~~~~~~~----s~~~~~li~~~L~~dP~~R~t~~e~l~h 273 (361)
T 2yab_A 239 EEFFSQT----SELAKDFIRKLLVKETRKRLTIQEALRH 273 (361)
T ss_dssp HHHHTTS----CHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred chhccCC----CHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000112 2348899999999999999999999864
No 51
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=2e-42 Score=369.02 Aligned_cols=256 Identities=26% Similarity=0.438 Sum_probs=202.8
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcE----EEEEEcccc-CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTA----IAVKQLSSK-SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~----vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 488 (756)
.++|+..+.||+|+||.||+|+. .+++. ||+|.+... .....+.+.+|+.++++++||||++++++|.++. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~ 92 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence 35788999999999999999994 44543 588887543 3345678999999999999999999999998765 78
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
+|+||+.+|+|.+++......+++..+..++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 93 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~ 169 (327)
T 3poz_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTHHHHHTT
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCChheEEECCCCCEEEccCcceeEccC
Confidence 999999999999999887778999999999999999999999996 99999999999999999999999999986544
Q ss_pred cCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCC
Q 004400 569 ENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNP 646 (756)
Q Consensus 569 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (756)
.... ......||+.|+|||++.+..++.++|||||||++|||++ |+.||............ .......
T Consensus 170 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~----~~~~~~~------ 239 (327)
T 3poz_A 170 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSIL----EKGERLP------ 239 (327)
T ss_dssp TCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHH----HTTCCCC------
T ss_pred CcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHH----HcCCCCC------
Confidence 3322 2334567889999999999999999999999999999999 99999765543332211 1111111
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 647 GSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 647 ~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
.+......+.+++.+||+.+|++||++.|+++.|+...
T Consensus 240 ---~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~ 277 (327)
T 3poz_A 240 ---QPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 277 (327)
T ss_dssp ---CCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHH
T ss_pred ---CCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 11112335889999999999999999999999998653
No 52
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=2.1e-41 Score=368.26 Aligned_cols=253 Identities=23% Similarity=0.312 Sum_probs=210.6
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
.++|...+.||+|+||.||+|.. .+|+.||+|.+..........+.+|+++++.++||||+++++++.+++..++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 46799999999999999999994 57899999999766555566889999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC--CCCEEEccCCccccCcccCc
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK--DLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~--~~~~kl~DFGla~~~~~~~~ 571 (756)
+++|+|.+++......+++..+..++.||+.||+|||+.| |+||||||+|||++. ++.+||+|||+++.......
T Consensus 130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~ 206 (387)
T 1kob_A 130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI 206 (387)
T ss_dssp CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC
T ss_pred CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccchHHeEEecCCCCceEEEecccceecCCCcc
Confidence 9999999999766667999999999999999999999997 999999999999974 46799999999987654332
Q ss_pred ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFD 651 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (756)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||...+........ ...... .+.......+
T Consensus 207 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i---~~~~~~---~~~~~~~~~s 278 (387)
T 1kob_A 207 --VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNV---KRCDWE---FDEDAFSSVS 278 (387)
T ss_dssp --EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHH---HHCCCC---CCSSTTTTSC
T ss_pred --eeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHH---HhCCCC---CCccccccCC
Confidence 23357999999999999989999999999999999999999999776554333221 111100 1111112233
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 652 KEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 652 ~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..+.+++.+||+.||++|||+.|+++.
T Consensus 279 ----~~~~~li~~~L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 279 ----PEAKDFIKNLLQKEPRKRLTVHDALEH 305 (387)
T ss_dssp ----HHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred ----HHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence 348899999999999999999999875
No 53
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=1.9e-41 Score=356.55 Aligned_cols=261 Identities=20% Similarity=0.255 Sum_probs=212.1
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e 492 (756)
.++|...+.||+|+||.||+|. ..+++.||||++.... ....+.+|+.+++.+ +|+|++++++++.++...++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 4678999999999999999999 4679999999986432 234688899999999 79999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC-----EEEccCCccccCc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN-----SKISDFGLAKLDE 567 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~-----~kl~DFGla~~~~ 567 (756)
|+ +++|.+++......+++..+..++.|++.||+|||+.| |+||||||+||+++.++. +||+|||+++...
T Consensus 87 ~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~ 162 (298)
T 1csn_A 87 LL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 162 (298)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred ec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEeccCCCCCCCeEEEEECccccccc
Confidence 99 99999999877667999999999999999999999986 999999999999987776 9999999998665
Q ss_pred ccCcc------eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhh---HHHHHHHHHhcCcc
Q 004400 568 EENTH------ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFY---LLDWALVLKEQGKL 638 (756)
Q Consensus 568 ~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~---~~~~~~~~~~~~~~ 638 (756)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ..............
T Consensus 163 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T 1csn_A 163 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPL 242 (298)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCH
T ss_pred cccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccH
Confidence 43221 2345679999999999999999999999999999999999999996543211 11111111111111
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcccc
Q 004400 639 MELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDVL 690 (756)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~~ 690 (756)
.... ..++ ..+.+++.+||+.||++||++.+|++.|+++....
T Consensus 243 ~~~~-----~~~~----~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~ 285 (298)
T 1csn_A 243 RELC-----AGFP----EEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERL 285 (298)
T ss_dssp HHHT-----TTSC----HHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHH-----hhCc----HHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhc
Confidence 1111 1222 34889999999999999999999999999775533
No 54
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=2.7e-42 Score=359.87 Aligned_cols=257 Identities=25% Similarity=0.372 Sum_probs=199.0
Q ss_pred hhcCccccCcccCCCCccEEEeecc----CCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLA----DGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 488 (756)
..++|+..+.||+|+||.||+|... .+..||+|.+.... ....+.+.+|+.++++++||||+++++++. ++..+
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 91 (281)
T 1mp8_A 13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 91 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccE
Confidence 3467889999999999999999853 24579999987542 334567899999999999999999999984 56789
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
+||||+++|+|.+++......+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++....
T Consensus 92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 168 (281)
T 1mp8_A 92 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 168 (281)
T ss_dssp EEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC---------
T ss_pred EEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHEEECCCCCEEECccccccccCc
Confidence 999999999999999877668999999999999999999999997 99999999999999999999999999987655
Q ss_pred cCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 569 ENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
..........+|+.|+|||.+....++.++||||||+++|||++ |+.||............ .. ..... ..
T Consensus 169 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i---~~-~~~~~-----~~ 239 (281)
T 1mp8_A 169 STYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRI---EN-GERLP-----MP 239 (281)
T ss_dssp ----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHH---HT-TCCCC-----CC
T ss_pred ccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHH---Hc-CCCCC-----CC
Confidence 44333344567889999999999999999999999999999997 99999765544332211 11 11111 11
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
..++ ..+.+++.+||+.||++||++.|+++.|+.+.
T Consensus 240 ~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 275 (281)
T 1mp8_A 240 PNCP----PTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 275 (281)
T ss_dssp TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 1223 34889999999999999999999999998653
No 55
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=3.9e-42 Score=383.01 Aligned_cols=259 Identities=29% Similarity=0.447 Sum_probs=208.2
Q ss_pred hhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
..++|...+.||+|+||.||+|.+.++..||||.++... ...+.|.+|++++++++||||+++++++.+ +..++||||
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~ 259 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 259 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehh
Confidence 456788899999999999999998888889999997643 345789999999999999999999999876 678999999
Q ss_pred cCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcc
Q 004400 494 LENNSLARALFE-HRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTH 572 (756)
Q Consensus 494 ~~~gsL~~~l~~-~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~ 572 (756)
+++|+|.+++.. ....+++..+..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++........
T Consensus 260 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~ 336 (452)
T 1fmk_A 260 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT 336 (452)
T ss_dssp CTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred hcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEECCCCCEEECCCccceecCCCcee
Confidence 999999999974 3346899999999999999999999996 999999999999999999999999999876543333
Q ss_pred eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCC
Q 004400 573 ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFD 651 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (756)
......+|+.|+|||.+....++.++|||||||++|||++ |+.||............ ..+..... ...+
T Consensus 337 ~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i----~~~~~~~~-----~~~~- 406 (452)
T 1fmk_A 337 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQV----ERGYRMPC-----PPEC- 406 (452)
T ss_dssp ------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHH----HTTCCCCC-----CTTS-
T ss_pred cccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHH----HcCCCCCC-----CCCC-
Confidence 3334557889999999999999999999999999999999 99999766544332211 11111111 1122
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcccc
Q 004400 652 KEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDVL 690 (756)
Q Consensus 652 ~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~~ 690 (756)
+..+.+++.+||+.||++|||+.+|++.|+.+....
T Consensus 407 ---~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~ 442 (452)
T 1fmk_A 407 ---PESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 442 (452)
T ss_dssp ---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred ---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccC
Confidence 334889999999999999999999999999875543
No 56
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=1.9e-41 Score=358.03 Aligned_cols=260 Identities=26% Similarity=0.411 Sum_probs=204.3
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
.++|...+.||+|+||.||+|... ..+|+|.++.. .....+.+.+|++++++++||||+++++++. .+..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEe
Confidence 467889999999999999999864 35899988753 2334567899999999999999999999865 556899999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc-Cc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE-NT 571 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~-~~ 571 (756)
|+++|+|.+++......+++.++..++.||+.||+|||+.+ |+||||||+||+++.++.+||+|||+++..... ..
T Consensus 112 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~~ 188 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCSSSEEECTTSCEEECCCCSSCC-------
T ss_pred cCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---EeeCCCChhhEEEcCCCCEEEccCCCceeccccccc
Confidence 99999999999877778999999999999999999999997 999999999999999999999999999865432 22
Q ss_pred ceeeccccCccCCchHhhh---cCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAM---RGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGS 648 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (756)
.......||+.|+|||++. ...++.++|||||||++|||++|+.||............ ...+....... ....
T Consensus 189 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~---~~~~~~~~~~~-~~~~ 264 (307)
T 3lb7_A 189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFM---VGRGYASPDLS-KLYK 264 (307)
T ss_dssp -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHH---HHHTCCCCCST-TSCS
T ss_pred ccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHH---HhcCCCCcchh-hhhc
Confidence 2234457999999999997 567899999999999999999999999655433322111 11111111100 1111
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 649 NFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 649 ~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.++ ..+.+++.+||+.+|++||++.|+++.|+....
T Consensus 265 ~~~----~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~ 300 (307)
T 3lb7_A 265 NCP----KAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp SSC----HHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHT
T ss_pred CCc----HHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHh
Confidence 223 348899999999999999999999999986544
No 57
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=5.7e-42 Score=368.40 Aligned_cols=249 Identities=23% Similarity=0.367 Sum_probs=202.1
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc---CcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK---SKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 488 (756)
..++|+..+.||+|+||.||+|+. .+++.||||+++.. .....+.+.+|..+++.+ +||||+++++++.+++..|
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 356899999999999999999994 56899999999753 233456688999999988 7999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
+||||+++|+|.+++... ..+++..+..++.||+.||+|||++| |+||||||+|||++.++.+||+|||+++....
T Consensus 101 lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NILl~~~g~ikL~DFG~a~~~~~ 176 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKS-RRFDEARARFYAAEIISALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC 176 (353)
T ss_dssp EEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred EEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence 999999999999999755 47999999999999999999999997 99999999999999999999999999985332
Q ss_pred cCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCC
Q 004400 569 ENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGS 648 (756)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (756)
.. ......+||+.|+|||++.+..++.++|||||||++|||++|+.||...+........ .. ... ....
T Consensus 177 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i---~~-~~~------~~p~ 245 (353)
T 3txo_A 177 NG-VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAI---LN-DEV------VYPT 245 (353)
T ss_dssp ----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH-CCC------CCCT
T ss_pred CC-ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHH---Hc-CCC------CCCC
Confidence 22 2234568999999999999989999999999999999999999999877654433221 11 110 0011
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCH------HHHHH
Q 004400 649 NFDKEQVMVMINVALLCANASPTIRPSM------SSVLR 681 (756)
Q Consensus 649 ~~~~~~~~~l~~l~~~c~~~~P~~RPt~------~ev~~ 681 (756)
..+ ..+.+++.+|++.||++||++ .|+++
T Consensus 246 ~~~----~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 246 WLH----EDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp TSC----HHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred CCC----HHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 222 348899999999999999998 66654
No 58
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=5.7e-42 Score=354.42 Aligned_cols=256 Identities=27% Similarity=0.447 Sum_probs=214.2
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEec
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYL 494 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 494 (756)
.++|...+.||+|+||.||+|...+++.||+|.+.... ...+.+.+|++++++++||||+++++++.+++..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence 35788899999999999999998888999999997643 34578999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCccee
Q 004400 495 ENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHIS 574 (756)
Q Consensus 495 ~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~~ 574 (756)
++++|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++..........
T Consensus 86 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~ 162 (267)
T 3t9t_A 86 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS 162 (267)
T ss_dssp TTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHST
T ss_pred CCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEECCCCCEEEccccccccccccccccc
Confidence 999999999877678999999999999999999999997 99999999999999999999999999986544332223
Q ss_pred eccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHH
Q 004400 575 TRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKE 653 (756)
Q Consensus 575 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (756)
....||..|+|||.+.+..++.++||||||+++|||++ |+.||........... ... +.. .......+
T Consensus 163 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~---i~~-~~~-----~~~~~~~~-- 231 (267)
T 3t9t_A 163 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVED---IST-GFR-----LYKPRLAS-- 231 (267)
T ss_dssp TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHH---HHT-TCC-----CCCCTTSC--
T ss_pred ccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHH---Hhc-CCc-----CCCCccCc--
Confidence 34567889999999999999999999999999999999 8999976554333221 111 111 00111222
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 654 QVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 654 ~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
..+.+++.+||+.||++||++.++++.|+++.
T Consensus 232 --~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~ 263 (267)
T 3t9t_A 232 --THVYQIMNHCWRERPEDRPAFSRLLRQLAEIA 263 (267)
T ss_dssp --HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 34889999999999999999999999998653
No 59
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=1.1e-41 Score=356.75 Aligned_cols=262 Identities=27% Similarity=0.366 Sum_probs=204.0
Q ss_pred cCccccCcccCCCCccEEEeeccCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 416 NNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
++|...+.||+|+||.||+|+..+|+.||+|++.... ......+.+|++++++++||||+++++++.+++..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 4788999999999999999998889999999986543 22346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcce
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHI 573 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~ 573 (756)
+++ +|.+++......+++..+..++.|++.||+|||++| |+||||||+||+++.++.+||+|||+++....... .
T Consensus 82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~ 156 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGIPVR-K 156 (288)
T ss_dssp CSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred cCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEeECccccccCcccc-c
Confidence 986 999999876678999999999999999999999997 99999999999999999999999999976543222 1
Q ss_pred eeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccc------cc--ccc
Q 004400 574 STRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLM------EL--VDT 644 (756)
Q Consensus 574 ~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~ 644 (756)
.....||+.|+|||++.+. .++.++||||+||++|||++|+.||...................... +. .+.
T Consensus 157 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (288)
T 1ob3_A 157 YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDP 236 (288)
T ss_dssp -----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCT
T ss_pred cccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccccc
Confidence 2345689999999999764 58999999999999999999999997665443332222111111000 00 000
Q ss_pred C-------CCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 645 N-------PGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 645 ~-------~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
. +...+.......+.+++.+|++.||++|||+.|+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 281 (288)
T 1ob3_A 237 NFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH 281 (288)
T ss_dssp TCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 0 0000111123457899999999999999999999763
No 60
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=361.33 Aligned_cols=252 Identities=23% Similarity=0.292 Sum_probs=206.9
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCc------ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSK------QGNREFINEIGMISALQHPNLVKLYGCCIEGNQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 487 (756)
.++|...+.||+|+||.||+|.. .+|+.||+|.+..... ...+.+.+|+.++++++||||+++++++.++...
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 45688999999999999999995 5789999999865422 1357799999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCC----CEEEccCCcc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDL----NSKISDFGLA 563 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~----~~kl~DFGla 563 (756)
++||||+++|+|.+++... ..+++..+..++.||+.||+|||+.+ |+||||||+||+++.++ .+||+|||++
T Consensus 90 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a 165 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAEK-ESLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLA 165 (326)
T ss_dssp EEEEECCCSCBHHHHHTTS-SCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCSSSSSCCEEECCCTTC
T ss_pred EEEEEcCCCCCHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHCC---eEcCCCCHHHEEEecCCCCCCCEEEEECCCC
Confidence 9999999999999999644 47999999999999999999999997 99999999999999887 7999999999
Q ss_pred ccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccc
Q 004400 564 KLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVD 643 (756)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (756)
+....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||............. .........
T Consensus 166 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~--~~~~~~~~~-- 239 (326)
T 2y0a_A 166 HKIDFGNE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVS--AVNYEFEDE-- 239 (326)
T ss_dssp EECCTTSC--CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHH--HTCCCCCHH--
T ss_pred eECCCCCc--cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHH--hcCCCcCcc--
Confidence 86643322 234579999999999998899999999999999999999999997665443322111 111110000
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 644 TNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 644 ~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..... ...+.+++.+||+.||++|||+.|+++.
T Consensus 240 --~~~~~----~~~~~~li~~~L~~dP~~Rpt~~e~l~h 272 (326)
T 2y0a_A 240 --YFSNT----SALAKDFIRRLLVKDPKKRMTIQDSLQH 272 (326)
T ss_dssp --HHTTS----CHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred --ccccC----CHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 00111 2348899999999999999999999874
No 61
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=3.8e-42 Score=369.56 Aligned_cols=262 Identities=28% Similarity=0.464 Sum_probs=214.7
Q ss_pred HHHhhcCccccCcccCCCCccEEEeecc------CCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEe
Q 004400 411 IKAATNNFATDNNIGEGGFGPVYKGLLA------DGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIE 483 (756)
Q Consensus 411 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 483 (756)
.....++|...+.||+|+||.||+|+.. +++.||||.++... ....+.+.+|+.++++++||||++++++|.+
T Consensus 42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~ 121 (343)
T 1luf_A 42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV 121 (343)
T ss_dssp TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc
Confidence 3445678999999999999999999864 35889999997643 3345678999999999999999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHHhcC-----------------------CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcC
Q 004400 484 GNQLLLIYEYLENNSLARALFEHR-----------------------LKLDWPTRRRICLGIARGLAYLHGESRIKVVHR 540 (756)
Q Consensus 484 ~~~~~lV~e~~~~gsL~~~l~~~~-----------------------~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~ 540 (756)
++..++||||+++|+|.+++.... ..+++..++.++.||++||+|||+++ |+||
T Consensus 122 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~---ivH~ 198 (343)
T 1luf_A 122 GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK---FVHR 198 (343)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCS
T ss_pred CCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecC
Confidence 999999999999999999997532 57899999999999999999999997 9999
Q ss_pred CCCCCceEecCCCCEEEccCCccccCcccCc-ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCC
Q 004400 541 DIKATNVLLDKDLNSKISDFGLAKLDEEENT-HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVT 618 (756)
Q Consensus 541 Dikp~Nill~~~~~~kl~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~ 618 (756)
||||+||+++.++.+||+|||+++....... .......||+.|+|||++.+..++.++||||||+++|||++ |+.||.
T Consensus 199 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~ 278 (343)
T 1luf_A 199 DLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYY 278 (343)
T ss_dssp CCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred CCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCC
Confidence 9999999999999999999999976543222 22334568999999999999999999999999999999999 999997
Q ss_pred ccchhhHHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 619 KEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
........... ..+..... ...++ ..+.+++.+||+.||++||++.++++.|+++.+
T Consensus 279 ~~~~~~~~~~~----~~~~~~~~-----~~~~~----~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~ 335 (343)
T 1luf_A 279 GMAHEEVIYYV----RDGNILAC-----PENCP----LELYNLMRLCWSKLPADRPSFCSIHRILQRMCE 335 (343)
T ss_dssp TSCHHHHHHHH----HTTCCCCC-----CTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred CCChHHHHHHH----hCCCcCCC-----CCCCC----HHHHHHHHHHcccCcccCCCHHHHHHHHHHHHh
Confidence 66543332211 11221111 11223 348899999999999999999999999997654
No 62
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.7e-42 Score=373.63 Aligned_cols=261 Identities=29% Similarity=0.432 Sum_probs=214.3
Q ss_pred hhcCccccCcccCCCCccEEEeecc--------CCcEEEEEEccccC-cccHHHHHHHHHHHHhC-CCCceeeEeeEEEe
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLA--------DGTAIAVKQLSSKS-KQGNREFINEIGMISAL-QHPNLVKLYGCCIE 483 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 483 (756)
..++|...+.||+|+||.||+|+.. ++..||||++.... ....+.+.+|+++++++ +|||||+++++|.+
T Consensus 67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 146 (382)
T 3tt0_A 67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 146 (382)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence 3468889999999999999999842 33579999997643 33446789999999999 99999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceE
Q 004400 484 GNQLLLIYEYLENNSLARALFEHR---------------LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVL 548 (756)
Q Consensus 484 ~~~~~lV~e~~~~gsL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nil 548 (756)
++..++||||+++|+|.+++.... ..+++..+..++.||+.||+|||+.+ |+||||||+|||
T Consensus 147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIl 223 (382)
T 3tt0_A 147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVL 223 (382)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEE
T ss_pred CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCcceEE
Confidence 999999999999999999998643 35999999999999999999999996 999999999999
Q ss_pred ecCCCCEEEccCCccccCcccCc-ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHH
Q 004400 549 LDKDLNSKISDFGLAKLDEEENT-HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLL 626 (756)
Q Consensus 549 l~~~~~~kl~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~ 626 (756)
++.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||.........
T Consensus 224 l~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~ 303 (382)
T 3tt0_A 224 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF 303 (382)
T ss_dssp ECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH
T ss_pred EcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 99999999999999986654332 22334567889999999999999999999999999999999 99999766544333
Q ss_pred HHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcccc
Q 004400 627 DWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDVL 690 (756)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~~ 690 (756)
... ........ ...++ ..+.+++.+||+.||++||++.||++.|+++....
T Consensus 304 ~~~----~~~~~~~~-----~~~~~----~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 354 (382)
T 3tt0_A 304 KLL----KEGHRMDK-----PSNCT----NELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALT 354 (382)
T ss_dssp HHH----HTTCCCCC-----CSSCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred HHH----HcCCCCCC-----CccCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence 221 11111111 11223 34889999999999999999999999999776544
No 63
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.1e-41 Score=357.02 Aligned_cols=265 Identities=19% Similarity=0.240 Sum_probs=210.9
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC--eEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGN--QLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lV 490 (756)
.++|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++.+.. ..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 35788999999999999999995 468999999997543 334577889999999999999999999998765 78999
Q ss_pred EEecCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe----cCCCCEEEccCCccc
Q 004400 491 YEYLENNSLARALFEHR--LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL----DKDLNSKISDFGLAK 564 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~--~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill----~~~~~~kl~DFGla~ 564 (756)
|||+++|+|.+++.... ..+++..+..++.|++.||+|||+.+ |+||||||+|||+ +.++.+||+|||+++
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~ 164 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (319)
T ss_dssp EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence 99999999999997543 23999999999999999999999997 9999999999999 788889999999998
Q ss_pred cCcccCcceeeccccCccCCchHhhh--------cCCCCcccchhhHHHHHHHHHhCCCCCCccch-hhHHHHHHHHHhc
Q 004400 565 LDEEENTHISTRVAGTIGYMAPEYAM--------RGHLTEKADVYSFGIVALEIVSGRSNVTKEDM-FYLLDWALVLKEQ 635 (756)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~-~~~~~~~~~~~~~ 635 (756)
....... .....||+.|+|||++. +..++.++|||||||++|||++|+.||..... .............
T Consensus 165 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~ 242 (319)
T 4euu_A 165 ELEDDEQ--FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITG 242 (319)
T ss_dssp ECCTTCC--BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHH
T ss_pred ecCCCCc--eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcC
Confidence 6654332 23457999999999987 46789999999999999999999999953321 1111111111111
Q ss_pred Cc--ccccc------------ccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhc
Q 004400 636 GK--LMELV------------DTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLE 684 (756)
Q Consensus 636 ~~--~~~~~------------~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~ 684 (756)
.. ....+ ........+......+.+++.+|++.||++|||+.|+++...
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~ 305 (319)
T 4euu_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS 305 (319)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred CCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccH
Confidence 11 00000 111122456677788999999999999999999999998876
No 64
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=1.1e-41 Score=353.05 Aligned_cols=253 Identities=28% Similarity=0.462 Sum_probs=197.6
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCc----ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSK----QGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|... ++.||||++..... ...+.+.+|+++++.++||||+++++++.+++..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 467889999999999999999975 88999999875422 2346789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC--------CCCEEEccCCc
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK--------DLNSKISDFGL 562 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~--------~~~~kl~DFGl 562 (756)
|||+++++|.+++. ...+++..+..++.|++.||+|||+++..+|+||||||+||+++. ++.+||+|||+
T Consensus 85 ~e~~~~~~L~~~~~--~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~ 162 (271)
T 3dtc_A 85 MEFARGGPLNRVLS--GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGL 162 (271)
T ss_dssp EECCTTEEHHHHHT--SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC
T ss_pred EEcCCCCCHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCc
Confidence 99999999999985 347999999999999999999999986555999999999999986 67899999999
Q ss_pred cccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccccc
Q 004400 563 AKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELV 642 (756)
Q Consensus 563 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (756)
++....... ....||+.|+|||.+.+..++.++||||||+++|||++|+.||...+....... .........
T Consensus 163 ~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~---~~~~~~~~~-- 234 (271)
T 3dtc_A 163 AREWHRTTK---MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG---VAMNKLALP-- 234 (271)
T ss_dssp ----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHH---HHTSCCCCC--
T ss_pred ccccccccc---cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHh---hhcCCCCCC--
Confidence 986543322 235689999999999999999999999999999999999999976554322211 111111111
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhcc
Q 004400 643 DTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLEC 685 (756)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~ 685 (756)
.....+ ..+.+++.+||+.||++|||+.|+++.|+.
T Consensus 235 ---~~~~~~----~~~~~li~~~l~~~p~~Rps~~e~l~~L~~ 270 (271)
T 3dtc_A 235 ---IPSTCP----EPFAKLMEDCWNPDPHSRPSFTNILDQLTT 270 (271)
T ss_dssp ---CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred ---CCcccC----HHHHHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence 112222 348899999999999999999999999975
No 65
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=2.3e-42 Score=373.72 Aligned_cols=261 Identities=26% Similarity=0.384 Sum_probs=209.9
Q ss_pred HHhhcCccccCcccCCCCccEEEeec------cCCcEEEEEEccccC-cccHHHHHHHHHHHHhC-CCCceeeEeeEEEe
Q 004400 412 KAATNNFATDNNIGEGGFGPVYKGLL------ADGTAIAVKQLSSKS-KQGNREFINEIGMISAL-QHPNLVKLYGCCIE 483 (756)
Q Consensus 412 ~~~~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 483 (756)
....++|...+.||+|+||.||+|++ .+++.||||++.... ....+.+.+|+++++++ +|||||+++++|.+
T Consensus 18 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~ 97 (359)
T 3vhe_A 18 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK 97 (359)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred cccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeec
Confidence 34567899999999999999999962 356899999997643 33346799999999999 79999999999987
Q ss_pred CC-eEEEEEEecCCCCHHHHHHhcCC------------------------------------------------------
Q 004400 484 GN-QLLLIYEYLENNSLARALFEHRL------------------------------------------------------ 508 (756)
Q Consensus 484 ~~-~~~lV~e~~~~gsL~~~l~~~~~------------------------------------------------------ 508 (756)
++ ..++||||+++|+|.+++.....
T Consensus 98 ~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (359)
T 3vhe_A 98 PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVE 177 (359)
T ss_dssp TTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------------
T ss_pred CCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhh
Confidence 65 48999999999999999975432
Q ss_pred -----------CCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc-ceeec
Q 004400 509 -----------KLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT-HISTR 576 (756)
Q Consensus 509 -----------~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~-~~~~~ 576 (756)
.+++..+..++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++....... .....
T Consensus 178 ~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~ 254 (359)
T 3vhe_A 178 EEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD 254 (359)
T ss_dssp ------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--
T ss_pred hcccccchhccccCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccc
Confidence 1899999999999999999999997 99999999999999999999999999986544322 23445
Q ss_pred cccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHHHH
Q 004400 577 VAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQV 655 (756)
Q Consensus 577 ~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (756)
..||+.|+|||++.+..++.++|||||||++|||++ |+.||.......... ... ........ ....+
T Consensus 255 ~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~--~~~-~~~~~~~~-----~~~~~---- 322 (359)
T 3vhe_A 255 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFC--RRL-KEGTRMRA-----PDYTT---- 322 (359)
T ss_dssp CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHH--HHH-HHTCCCCC-----CTTCC----
T ss_pred cCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHH--HHH-HcCCCCCC-----CCCCC----
Confidence 678999999999999999999999999999999998 999996554322111 111 11111111 11223
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 656 MVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 656 ~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
..+.+++.+||+.||++|||+.|+++.|+++.
T Consensus 323 ~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 354 (359)
T 3vhe_A 323 PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 354 (359)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence 34889999999999999999999999998653
No 66
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=374.15 Aligned_cols=254 Identities=22% Similarity=0.323 Sum_probs=207.4
Q ss_pred hhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
..++|...+.||+|+||.||+|. ..+|+.||+|++.... ....+.+.+|+++++.++|||||++++++.+++..++|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 35688999999999999999998 5678999999987543 23346789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEec---CCCCEEEccCCccccCc
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLD---KDLNSKISDFGLAKLDE 567 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~---~~~~~kl~DFGla~~~~ 567 (756)
|||+++|+|.+.+... ..+++..+..++.||+.||+|||++| |+||||||+|||++ .++.+||+|||+++...
T Consensus 89 ~E~~~gg~L~~~i~~~-~~~~e~~~~~i~~qil~aL~~lH~~g---ivHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~ 164 (444)
T 3soa_A 89 FDLVTGGELFEDIVAR-EYYSEADASHCIQQILEAVLHCHQMG---VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVE 164 (444)
T ss_dssp ECCCBCCBHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCC
T ss_pred EEeCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEeccCCCCcEEEccCceeEEec
Confidence 9999999999999765 46999999999999999999999997 99999999999998 46789999999998665
Q ss_pred ccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 568 EENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
..... .....||+.|+|||++.+..++.++||||+||++|+|++|+.||...+........ .. +.. ... ....
T Consensus 165 ~~~~~-~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i---~~-~~~-~~~-~~~~ 237 (444)
T 3soa_A 165 GEQQA-WFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQI---KA-GAY-DFP-SPEW 237 (444)
T ss_dssp TTCCB-CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH---HH-TCC-CCC-TTTT
T ss_pred CCCce-eecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHH---Hh-CCC-CCC-cccc
Confidence 43322 23467999999999999989999999999999999999999999776654433221 11 111 010 1111
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
...+ ..+.+++.+|++.||++|||+.|+++.
T Consensus 238 ~~~s----~~~~~li~~~L~~dP~~Rpta~e~L~h 268 (444)
T 3soa_A 238 DTVT----PEAKDLINKMLTINPSKRITAAEALKH 268 (444)
T ss_dssp TTSC----HHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred ccCC----HHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 1223 348899999999999999999999874
No 67
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=368.22 Aligned_cols=249 Identities=24% Similarity=0.308 Sum_probs=201.4
Q ss_pred cccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEecCCC
Q 004400 419 ATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENN 497 (756)
Q Consensus 419 ~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~g 497 (756)
...+.||+|+||.||+|. ..+|+.||+|++........+.+.+|++++++++||||++++++|.+++..++||||+++|
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 345789999999999998 4679999999998765556678999999999999999999999999999999999999999
Q ss_pred CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe--cCCCCEEEccCCccccCcccCcceee
Q 004400 498 SLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL--DKDLNSKISDFGLAKLDEEENTHIST 575 (756)
Q Consensus 498 sL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill--~~~~~~kl~DFGla~~~~~~~~~~~~ 575 (756)
+|.+++......+++..+..++.||+.||+|||+.+ |+||||||+|||+ +.++.+||+|||+++....... ..
T Consensus 172 ~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~--~~ 246 (373)
T 2x4f_A 172 ELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMY---ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK--LK 246 (373)
T ss_dssp EEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB--CC
T ss_pred cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc--cc
Confidence 999999877667999999999999999999999997 9999999999999 5677899999999987654332 23
Q ss_pred ccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHHHH
Q 004400 576 RVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQV 655 (756)
Q Consensus 576 ~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (756)
...||+.|+|||++....++.++|||||||++|||++|+.||...+........ ...... .. ......++
T Consensus 247 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i---~~~~~~--~~-~~~~~~~~---- 316 (373)
T 2x4f_A 247 VNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNI---LACRWD--LE-DEEFQDIS---- 316 (373)
T ss_dssp CCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH---HHTCCC--SC-SGGGTTSC----
T ss_pred cccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---HhccCC--CC-hhhhccCC----
Confidence 356999999999999888999999999999999999999999776544332211 111100 00 00011223
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 656 MVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 656 ~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..+.+++.+|++.||++||++.|+++.
T Consensus 317 ~~~~~li~~~L~~dp~~Rps~~e~l~h 343 (373)
T 2x4f_A 317 EEAKEFISKLLIKEKSWRISASEALKH 343 (373)
T ss_dssp HHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred HHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 348899999999999999999999873
No 68
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=2e-41 Score=365.98 Aligned_cols=252 Identities=21% Similarity=0.332 Sum_probs=206.5
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
.++|...+.||+|+||.||+|.. .+|+.||+|++.... ....+.+.+|+.++++++|||||++++++.+++..++||
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 107 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 107 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 46789999999999999999984 578999999996542 234467889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCC---CEEEccCCccccCcc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDL---NSKISDFGLAKLDEE 568 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~---~~kl~DFGla~~~~~ 568 (756)
||+++|+|.+++... ..+++..+..++.||+.||+|||+.+ |+||||||+|||++.++ .+||+|||+++....
T Consensus 108 e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~ 183 (362)
T 2bdw_A 108 DLVTGGELFEDIVAR-EFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 183 (362)
T ss_dssp CCCCSCBHHHHHTTC-SCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTT
T ss_pred ecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEeecCcceEecC
Confidence 999999999998654 47899999999999999999999997 99999999999998654 599999999986654
Q ss_pred cCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCC
Q 004400 569 ENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGS 648 (756)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (756)
... .....||+.|+|||++.+..++.++|||||||++|+|++|+.||...+......... ....... .....
T Consensus 184 ~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~--~~~~~~~----~~~~~ 255 (362)
T 2bdw_A 184 SEA--WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIK--AGAYDYP----SPEWD 255 (362)
T ss_dssp CCS--CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH--HTCCCCC----TTGGG
T ss_pred Ccc--cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH--hCCCCCC----ccccc
Confidence 322 234679999999999999899999999999999999999999997765543332211 1111000 00001
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 649 NFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 649 ~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.. ...+.+++.+||+.||++||++.|+++.
T Consensus 256 ~~----~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 256 TV----TPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp GS----CHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred CC----CHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 12 2348899999999999999999999764
No 69
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=4.1e-41 Score=356.68 Aligned_cols=245 Identities=24% Similarity=0.377 Sum_probs=205.7
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|+..+.||+|+||.||+|+. .+|+.||+|++... .....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 35788999999999999999995 57999999998653 123456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++|+|.+++... ..+++..+..++.||+.||+|||++| |+||||||+|||++.++.+||+|||+++.....
T Consensus 85 ~e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~- 159 (318)
T 1fot_A 85 MDYIEGGELFSLLRKS-QRFPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYVPDV- 159 (318)
T ss_dssp ECCCCSCBHHHHHHHT-SSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSCEECSSC-
T ss_pred EeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChheEEEcCCCCEEEeecCcceecCCc-
Confidence 9999999999999764 47899999999999999999999987 999999999999999999999999999865432
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
....+||+.|+|||++.+..++.++|||||||++|||++|+.||...+....... ...... . ....+
T Consensus 160 ---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~--i~~~~~---~-----~p~~~ 226 (318)
T 1fot_A 160 ---TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEK--ILNAEL---R-----FPPFF 226 (318)
T ss_dssp ---BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHH--HHHCCC---C-----CCTTS
T ss_pred ---cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHH--HHhCCC---C-----CCCCC
Confidence 2346799999999999999999999999999999999999999977654433221 111110 0 11122
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCC-----CHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRP-----SMSSVLR 681 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RP-----t~~ev~~ 681 (756)
+ ..+.+++.+|++.||++|| ++.|+++
T Consensus 227 ~----~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 227 N----EDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp C----HHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred C----HHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 3 3488999999999999999 8888864
No 70
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=8.9e-42 Score=357.20 Aligned_cols=259 Identities=25% Similarity=0.424 Sum_probs=216.6
Q ss_pred HHhhcCccccCcccCCCCccEEEeecc-CCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 412 KAATNNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 412 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
....++|+..+.||+|+||.||+|... ++..||+|.+... ....+.+.+|++++++++||||+++++++.+++..++|
T Consensus 9 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v 87 (288)
T 3kfa_A 9 EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87 (288)
T ss_dssp BCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEE
T ss_pred cccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEE
Confidence 345678999999999999999999954 5889999999753 33457899999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 491 YEYLENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
|||+++|+|.+++... ...+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++.....
T Consensus 88 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~ 164 (288)
T 3kfa_A 88 TEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGD 164 (288)
T ss_dssp EECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHT---CCCSCCSGGGEEECGGGCEEECCCCGGGTSCSS
T ss_pred EEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCC---ccCCCCCcceEEEcCCCCEEEccCccceeccCC
Confidence 9999999999999753 346899999999999999999999997 999999999999999999999999999877655
Q ss_pred CcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCC
Q 004400 570 NTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGS 648 (756)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (756)
.........+|+.|+|||.+.+..++.++||||||+++|+|++ |+.||...+........ ...... ....
T Consensus 165 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~----~~~~~~-----~~~~ 235 (288)
T 3kfa_A 165 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELL----EKDYRM-----ERPE 235 (288)
T ss_dssp SSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHH----HTTCCC-----CCCT
T ss_pred ccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH----hccCCC-----CCCC
Confidence 5444455668889999999999999999999999999999999 99999665543332211 111111 1112
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 649 NFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 649 ~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
.++ ..+.+++.+|++.||.+||++.++++.|+.+.
T Consensus 236 ~~~----~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~ 270 (288)
T 3kfa_A 236 GCP----EKVYELMRACWQWNPSDRPSFAEIHQAFETMF 270 (288)
T ss_dssp TCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCC----HHHHHHHHHHhCCChhhCcCHHHHHHHHHHHH
Confidence 223 34889999999999999999999999998653
No 71
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=5.9e-41 Score=356.09 Aligned_cols=259 Identities=23% Similarity=0.377 Sum_probs=192.5
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
.++|+..+.||+|+||.||+|.. .+|+.||+|.+.... ......+.+|++++++++||||+++++++.+++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 45789999999999999999984 578999999986543 2334678999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 493 YLENNSLARALFEHR-----LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~-----~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
|++ |+|.+++.... ..+++..+..++.||+.||+|||+.| |+||||||+||+++.++.+||+|||+++...
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 998 59999887432 45899999999999999999999997 9999999999999999999999999998654
Q ss_pred ccCcceeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc---ccc---
Q 004400 568 EENTHISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK---LME--- 640 (756)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~---~~~--- 640 (756)
.... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...+................ ...
T Consensus 160 ~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 238 (317)
T 2pmi_A 160 IPVN-TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTK 238 (317)
T ss_dssp SCCC-CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGG
T ss_pred CCcc-cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhh
Confidence 3322 1234578999999999976 4689999999999999999999999977665443332222111100 000
Q ss_pred ------------------ccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 641 ------------------LVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 641 ------------------~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.+........ ...+.+++.+|++.||++|||+.|+++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~li~~~L~~dP~~Rpt~~e~l~h 294 (317)
T 2pmi_A 239 LPKYNPNIQQRPPRDLRQVLQPHTKEPL----DGNLMDFLHGLLQLNPDMRLSAKQALHH 294 (317)
T ss_dssp CTTCCTTCCCCCCCCSHHHHGGGCSSCC----CHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred hhhcccccccccchhHHHhhcccccccC----CHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence 0000001112 2358899999999999999999998753
No 72
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=1.8e-41 Score=377.35 Aligned_cols=251 Identities=29% Similarity=0.438 Sum_probs=207.3
Q ss_pred hhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC-eEEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGN-QLLLIYE 492 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~lV~e 492 (756)
..++|...+.||+|+||.||+|.+. ++.||||.++... ..+.|.+|++++++++|||||++++++.+.+ ..++|||
T Consensus 191 ~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e 267 (450)
T 1k9a_A 191 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE 267 (450)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEE
T ss_pred ChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEE
Confidence 4568899999999999999999875 7899999997643 4578999999999999999999999988765 7999999
Q ss_pred ecCCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 493 YLENNSLARALFEHRL-KLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~-~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
||++|+|.+++..... .+++..+..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.....
T Consensus 268 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~-- 342 (450)
T 1k9a_A 268 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-- 342 (450)
T ss_dssp CCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTSCEEECCCTTCEECC----
T ss_pred ecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEECCCCCEEEeeCCCccccccc--
Confidence 9999999999986543 4799999999999999999999996 999999999999999999999999999854322
Q ss_pred ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
.....+++.|+|||++.+..++.++|||||||++|||++ |+.||........... . ..+..... ...+
T Consensus 343 --~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~---i-~~~~~~~~-----p~~~ 411 (450)
T 1k9a_A 343 --QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPR---V-EKGYKMDA-----PDGC 411 (450)
T ss_dssp ------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHH---H-HTTCCCCC-----CTTC
T ss_pred --ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH---H-HcCCCCCC-----CCcC
Confidence 122357889999999999999999999999999999998 9999976544333221 1 11211111 1122
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
+ ..+.+++.+||+.||++|||+.++++.|+.+.
T Consensus 412 ~----~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~ 444 (450)
T 1k9a_A 412 P----PAVYDVMKNCWHLDAATRPTFLQLREQLEHIR 444 (450)
T ss_dssp C----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 3 34889999999999999999999999998653
No 73
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=1.6e-41 Score=357.67 Aligned_cols=258 Identities=26% Similarity=0.408 Sum_probs=201.4
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHh--CCCCceeeEeeEEEeC----CeEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISA--LQHPNLVKLYGCCIEG----NQLL 488 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~----~~~~ 488 (756)
.++|...+.||+|+||.||+|+. +++.||||++... ....+.+|.+++.. ++||||+++++++.+. ...+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 46889999999999999999987 6899999998643 34566777777776 7999999999997653 4689
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH--------cCCCCCeEcCCCCCCceEecCCCCEEEccC
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLH--------GESRIKVVHRDIKATNVLLDKDLNSKISDF 560 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH--------~~g~~~iiH~Dikp~Nill~~~~~~kl~DF 560 (756)
+||||+++|+|.+++.. ..+++..+..++.|++.||+||| +.+ |+||||||+|||++.++.+||+||
T Consensus 83 lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~Nill~~~~~~kl~Df 157 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQL--TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA---IAHRDLKSKNILVKKNGQCCIADL 157 (301)
T ss_dssp EEECCCTTCBHHHHHTT--CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE---EECSCCCGGGEEECTTSCEEECCC
T ss_pred EehhhccCCCHHHHHhh--cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC---eecCCCChHhEEEcCCCCEEEeeC
Confidence 99999999999999953 47999999999999999999999 665 999999999999999999999999
Q ss_pred CccccCcccCcce---eeccccCccCCchHhhhcC------CCCcccchhhHHHHHHHHHhC----------CCCCCccc
Q 004400 561 GLAKLDEEENTHI---STRVAGTIGYMAPEYAMRG------HLTEKADVYSFGIVALEIVSG----------RSNVTKED 621 (756)
Q Consensus 561 Gla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~slGv~l~elltg----------~~p~~~~~ 621 (756)
|+++......... .....||+.|+|||++.+. .++.++|||||||++|||++| +.||....
T Consensus 158 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~ 237 (301)
T 3q4u_A 158 GLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVV 237 (301)
T ss_dssp TTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred CCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccC
Confidence 9997654433222 2334799999999999876 455799999999999999999 78884322
Q ss_pred hh--hHHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhcc
Q 004400 622 MF--YLLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLEC 685 (756)
Q Consensus 622 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~ 685 (756)
.. .................. +....+......+.+++.+||+.||++|||+.||++.|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~ 299 (301)
T 3q4u_A 238 PNDPSFEDMRKVVCVDQQRPNI----PNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTK 299 (301)
T ss_dssp CSSCCHHHHHHHHTTSCCCCCC----CGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHH
T ss_pred CCCcchhhhhHHHhccCCCCCC----ChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhc
Confidence 11 111111111111111111 1111233456679999999999999999999999999985
No 74
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=7e-41 Score=351.25 Aligned_cols=262 Identities=21% Similarity=0.293 Sum_probs=203.7
Q ss_pred cCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
++|+..+.||+|+||+||+|+. .+++.||||++.... ......+.+|+.++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 4788999999999999999995 578999999987543 2234678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTH 572 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~ 572 (756)
|+++ ++.+.+......+++..+..++.|++.||+|||++| |+||||||+||+++.++.+||+|||+++.......
T Consensus 82 ~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~---ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 156 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR- 156 (292)
T ss_dssp CCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCSCCS-
T ss_pred cCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccceecCCccc-
Confidence 9986 666666666668999999999999999999999997 99999999999999999999999999986543322
Q ss_pred eeeccccCccCCchHhhhcCC-CCcccchhhHHHHHHHHHhCCCCCCcc-chhhHHHHHHHHHhcCccc------ccccc
Q 004400 573 ISTRVAGTIGYMAPEYAMRGH-LTEKADVYSFGIVALEIVSGRSNVTKE-DMFYLLDWALVLKEQGKLM------ELVDT 644 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slGv~l~elltg~~p~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~ 644 (756)
......||+.|+|||++.+.. ++.++|||||||++|||++|+.|+... +.................. ...+.
T Consensus 157 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 236 (292)
T 3o0g_A 157 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDY 236 (292)
T ss_dssp CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTC
T ss_pred cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccc
Confidence 233457899999999998765 899999999999999999998886433 3322222221111110000 00000
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 645 ---------NPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 645 ---------~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.......+.....+.+++.+|++.||++|||+.|+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 283 (292)
T 3o0g_A 237 KPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH 283 (292)
T ss_dssp CCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred cccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 00001112233458899999999999999999999863
No 75
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=2.2e-41 Score=362.39 Aligned_cols=250 Identities=24% Similarity=0.364 Sum_probs=205.5
Q ss_pred HHhhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC---cccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCe
Q 004400 412 KAATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS---KQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQ 486 (756)
Q Consensus 412 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 486 (756)
+...++|...+.||+|+||.||+|+. .+|+.||||+++... ......+..|..++..+ +||||+++++++.+++.
T Consensus 13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~ 92 (345)
T 1xjd_A 13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN 92 (345)
T ss_dssp ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence 34567899999999999999999995 578999999997542 23456788899999887 99999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 487 LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
.|+||||+++|+|.+++... ..+++..+..++.||+.||+|||++| |+||||||+|||++.++.+||+|||+++..
T Consensus 93 ~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~ 168 (345)
T 1xjd_A 93 LFFVMEYLNGGDLMYHIQSC-HKFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKEN 168 (345)
T ss_dssp EEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence 99999999999999999754 37999999999999999999999997 999999999999999999999999999854
Q ss_pred cccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCC
Q 004400 567 EEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNP 646 (756)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (756)
..... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||...+........ ... . ...
T Consensus 169 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i---~~~-~------~~~ 237 (345)
T 1xjd_A 169 MLGDA-KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSI---RMD-N------PFY 237 (345)
T ss_dssp CCTTC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HHC-C------CCC
T ss_pred ccCCC-cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHH---HhC-C------CCC
Confidence 32221 234568999999999999999999999999999999999999999776654433221 111 1 001
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCCCCHH-HHH
Q 004400 647 GSNFDKEQVMVMINVALLCANASPTIRPSMS-SVL 680 (756)
Q Consensus 647 ~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~-ev~ 680 (756)
...++ ..+.+++.+|++.||++||++. ++.
T Consensus 238 p~~~s----~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 238 PRWLE----KEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp CTTSC----HHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred CcccC----HHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 11223 3488999999999999999997 554
No 76
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=3.4e-42 Score=367.39 Aligned_cols=271 Identities=28% Similarity=0.383 Sum_probs=212.5
Q ss_pred hcCccccCcccCCCCccEEEeec-----cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEE--eCCeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-----ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCI--EGNQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~ 487 (756)
.++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++. +....
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 35788999999999999999983 468899999998766666678999999999999999999999987 45678
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
++||||+++|+|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 178 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRR---CVHRDLAARNILVESEAHVKIADFGLAKLLP 178 (327)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCGGGCEECC
T ss_pred EEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChhhEEECCCCCEEEcccccceecc
Confidence 9999999999999999876667999999999999999999999997 9999999999999999999999999998765
Q ss_pred ccCcc--eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHH--HHHHhcCccccccc
Q 004400 568 EENTH--ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWA--LVLKEQGKLMELVD 643 (756)
Q Consensus 568 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 643 (756)
..... ......||+.|+|||++.+..++.++||||||+++|+|++|+.||..........+. ..........+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (327)
T 3lxl_A 179 LDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLE 258 (327)
T ss_dssp TTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHH
T ss_pred cCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhh
Confidence 43322 223456888999999999988999999999999999999999998544322111000 00000000000111
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 644 TNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 644 ~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.......+......+.+++.+||+.||++|||+.|+++.|+.+..
T Consensus 259 ~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~ 303 (327)
T 3lxl_A 259 EGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWS 303 (327)
T ss_dssp TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC--
T ss_pred cccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 111111122223458899999999999999999999999996644
No 77
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=8e-42 Score=363.88 Aligned_cols=263 Identities=23% Similarity=0.393 Sum_probs=197.6
Q ss_pred HHhhcCccccCcccCCCCccEEEeeccC-Cc---EEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC
Q 004400 412 KAATNNFATDNNIGEGGFGPVYKGLLAD-GT---AIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEGN 485 (756)
Q Consensus 412 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~-~~---~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 485 (756)
....++|...+.||+|+||.||+|+... +. .||||.+... .....+.+.+|++++++++||||+++++++.+..
T Consensus 19 ~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 98 (323)
T 3qup_A 19 LIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSR 98 (323)
T ss_dssp BCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-
T ss_pred ccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccc
Confidence 3456789999999999999999999553 32 7999999764 3344578999999999999999999999998876
Q ss_pred eE------EEEEEecCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC
Q 004400 486 QL------LLIYEYLENNSLARALFEHR-----LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN 554 (756)
Q Consensus 486 ~~------~lV~e~~~~gsL~~~l~~~~-----~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~ 554 (756)
.. ++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.
T Consensus 99 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~Dikp~NIli~~~~~ 175 (323)
T 3qup_A 99 AKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRN---FIHRDLAARNCMLAEDMT 175 (323)
T ss_dssp ------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSC
T ss_pred cccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCC---cccCCCCcceEEEcCCCC
Confidence 65 99999999999999996432 25899999999999999999999997 999999999999999999
Q ss_pred EEEccCCccccCcccCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHH
Q 004400 555 SKISDFGLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVL 632 (756)
Q Consensus 555 ~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~ 632 (756)
+||+|||+++........ ......+|+.|+|||.+.+..++.++|||||||++|||++ |+.||...+........
T Consensus 176 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~--- 252 (323)
T 3qup_A 176 VCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYL--- 252 (323)
T ss_dssp EEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHH---
T ss_pred EEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHH---
Confidence 999999999865443322 2233457889999999999999999999999999999999 89999765544333211
Q ss_pred HhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcccc
Q 004400 633 KEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDVL 690 (756)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~~ 690 (756)
.... ... ....++ ..+.+++.+||+.||++|||+.++++.|+++....
T Consensus 253 ~~~~-~~~-----~~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~ 300 (323)
T 3qup_A 253 IGGN-RLK-----QPPECM----EEVYDLMYQCWSADPKQRPSFTCLRMELENILGHL 300 (323)
T ss_dssp HTTC-CCC-----CCTTCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred hcCC-CCC-----CCCccC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 1111 111 111222 34889999999999999999999999999776544
No 78
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1.2e-41 Score=360.89 Aligned_cols=258 Identities=31% Similarity=0.465 Sum_probs=211.7
Q ss_pred hhcCccccCcccCCCCccEEEeec------cCCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCe
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL------ADGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQ 486 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 486 (756)
..++|...+.||+|+||.||+|.. .+++.||||.+.... ....+.+.+|++++++++||||+++++++.+++.
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 100 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP 100 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence 356888999999999999999984 245789999997543 3345678999999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhcC-----------------------CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCC
Q 004400 487 LLLIYEYLENNSLARALFEHR-----------------------LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIK 543 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~-----------------------~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dik 543 (756)
.++||||+++|+|.+++.... ..+++..+..++.||+.||+|||+++ |+|||||
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dik 177 (314)
T 2ivs_A 101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMK---LVHRDLA 177 (314)
T ss_dssp CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTT---EECCCCS
T ss_pred eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCC---Ccccccc
Confidence 999999999999999997543 23899999999999999999999997 9999999
Q ss_pred CCceEecCCCCEEEccCCccccCcccCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccc
Q 004400 544 ATNVLLDKDLNSKISDFGLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKED 621 (756)
Q Consensus 544 p~Nill~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~ 621 (756)
|+||+++.++.+||+|||+++........ ......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||....
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 257 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP 257 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999999866543322 2233467889999999999899999999999999999999 999997655
Q ss_pred hhhHHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 622 MFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
........ ....... ....++ ..+.+++.+||+.||++||++.|+++.|+++.
T Consensus 258 ~~~~~~~~----~~~~~~~-----~~~~~~----~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~ 310 (314)
T 2ivs_A 258 PERLFNLL----KTGHRME-----RPDNCS----EEMYRLMLQCWKQEPDKRPVFADISKDLEKMM 310 (314)
T ss_dssp GGGHHHHH----HTTCCCC-----CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHh----hcCCcCC-----CCccCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 43332211 1111111 111223 34889999999999999999999999998653
No 79
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=1.7e-41 Score=361.71 Aligned_cols=256 Identities=26% Similarity=0.428 Sum_probs=205.0
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcE----EEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTA----IAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 488 (756)
.++|...+.||+|+||.||+|+. .+++. ||+|.+.... ......+.+|+.++++++||||++++++|. ++..+
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 90 (325)
T 3kex_A 12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQ 90 (325)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEE
T ss_pred HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccE
Confidence 35788899999999999999984 44554 7888775432 233456788999999999999999999986 56689
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
+||||+.+|+|.+++......+++..+..++.|++.||+|||+.| |+||||||+|||++.++.+||+|||+++....
T Consensus 91 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 167 (325)
T 3kex_A 91 LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADLLPP 167 (325)
T ss_dssp EEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTT---CCCSCCSSTTEEESSSSCEEECSCSGGGGSCC
T ss_pred EEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCC---CCCCccchheEEECCCCeEEECCCCcccccCc
Confidence 999999999999999876668999999999999999999999997 99999999999999999999999999987654
Q ss_pred cCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCC
Q 004400 569 ENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNP 646 (756)
Q Consensus 569 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (756)
.... ......||..|+|||++.+..++.++|||||||++|||++ |+.||............ ...........
T Consensus 168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~----~~~~~~~~~~~-- 241 (325)
T 3kex_A 168 DDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLL----EKGERLAQPQI-- 241 (325)
T ss_dssp CTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHH----HTTCBCCCCTT--
T ss_pred ccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHH----HcCCCCCCCCc--
Confidence 4332 2344568889999999999999999999999999999999 99999765543332221 11111111111
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 647 GSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 647 ~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
.+ ..+.+++.+||+.||.+||++.++++.|+.+.
T Consensus 242 ---~~----~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~ 275 (325)
T 3kex_A 242 ---CT----IDVYMVMVKCWMIDENIRPTFKELANEFTRMA 275 (325)
T ss_dssp ---BC----TTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHT
T ss_pred ---Cc----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 11 13778999999999999999999999998653
No 80
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=3.5e-41 Score=365.26 Aligned_cols=250 Identities=24% Similarity=0.359 Sum_probs=203.3
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|. ..+++.||+|.+... .....+.+.+|+++++.++|||||+++++|.+.+..++|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 3578899999999999999999 456899999998653 233456789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+.+|+|.+++... ..+++..+..++.||+.||+|||+.| |+||||||+|||++.++.+||+|||+++......
T Consensus 94 ~e~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~ 169 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQN-VHFKEETVKLFICELVMALDYLQNQR---IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET 169 (384)
T ss_dssp ECCCTTEEHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred EecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEECCCCCEEEeccceeeeccCCC
Confidence 9999999999999754 47999999999999999999999997 9999999999999999999999999998654332
Q ss_pred cceeeccccCccCCchHhhhc---CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMR---GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
.....+||+.|+|||++.. ..++.++|||||||++|||++|+.||................... . . ..
T Consensus 170 --~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-~-~-----~p 240 (384)
T 4fr4_A 170 --QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTV-V-T-----YP 240 (384)
T ss_dssp --CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCC-C-C-----CC
T ss_pred --ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcc-c-C-----CC
Confidence 2345689999999999974 458999999999999999999999996543322222111111110 0 0 11
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCC-HHHHHH
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPS-MSSVLR 681 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt-~~ev~~ 681 (756)
..++ ..+.+++.+||+.||.+||+ +.++.+
T Consensus 241 ~~~s----~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 241 SAWS----QEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp TTSC----HHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred CcCC----HHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 1223 34889999999999999998 666653
No 81
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=7.9e-42 Score=363.56 Aligned_cols=253 Identities=28% Similarity=0.425 Sum_probs=202.2
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCc-ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSK-QGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
.++|+..+.||+|+||.||+|+. .+++.||||++..... ...+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 36899999999999999999995 4789999999865422 234568899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc-
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT- 571 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~- 571 (756)
|+++|+|.+++... ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++.......
T Consensus 86 ~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 161 (323)
T 3tki_A 86 YCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161 (323)
T ss_dssp CCTTEEGGGGSBTT-TBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred cCCCCcHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccchHHEEEeCCCCEEEEEeeccceeccCCcc
Confidence 99999999988543 46999999999999999999999997 99999999999999999999999999986543322
Q ss_pred ceeeccccCccCCchHhhhcCCC-CcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHL-TEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
.......||+.|+|||++.+..+ +.++|||||||++|||++|+.||......... +.. ......... ....+
T Consensus 162 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~-~~~-~~~~~~~~~-----~~~~~ 234 (323)
T 3tki_A 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE-YSD-WKEKKTYLN-----PWKKI 234 (323)
T ss_dssp CCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHH-HHH-HHTTCTTST-----TGGGS
T ss_pred cccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHH-HHH-HhcccccCC-----ccccC
Confidence 22345679999999999988765 77999999999999999999999654332111 110 111111000 01112
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
...+.+++.+|++.||++|||+.|+++.
T Consensus 235 ----~~~~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 235 ----DSAPLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp ----CHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ----CHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 2347899999999999999999999875
No 82
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=4.9e-41 Score=360.85 Aligned_cols=245 Identities=22% Similarity=0.321 Sum_probs=206.3
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|+..+.||+|+||.||+|+. .+|+.||+|++... .....+.+.+|+.+++.++||||+++++++.+++..|+|
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 46899999999999999999995 57999999998653 223456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++|+|.+++... ..+++..+..++.||+.||+|||++| |+||||||+|||++.++.+||+|||+++.....
T Consensus 120 ~e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~- 194 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR- 194 (350)
T ss_dssp EECCTTCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECSSC-
T ss_pred EcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCccceEEECCCCCEEEcccccceeccCC-
Confidence 9999999999999764 36999999999999999999999997 999999999999999999999999999865432
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
....+||+.|+|||++.+..++.++|||||||++|||++|+.||...+........ .. +.. . ....+
T Consensus 195 ---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i---~~-~~~-~-----~p~~~ 261 (350)
T 1rdq_E 195 ---TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKI---VS-GKV-R-----FPSHF 261 (350)
T ss_dssp ---BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH-CCC-C-----CCTTC
T ss_pred ---cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHH---Hc-CCC-C-----CCCCC
Confidence 23467999999999999999999999999999999999999999776554333211 11 111 1 11123
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCC-----HHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPS-----MSSVLR 681 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt-----~~ev~~ 681 (756)
+ ..+.+++.+|++.||++||+ +.||++
T Consensus 262 ~----~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 262 S----SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp C----HHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred C----HHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 3 34889999999999999998 777754
No 83
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=5.3e-41 Score=361.54 Aligned_cols=253 Identities=21% Similarity=0.321 Sum_probs=203.8
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC-----cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS-----KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 488 (756)
.+.|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.+++.++||||+++++++.+++..+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 35788899999999999999984 578999999986421 224578999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC---EEEccCCc
Q 004400 489 LIYEYLENNSLARALFEH---RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN---SKISDFGL 562 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~---~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~---~kl~DFGl 562 (756)
+|||||++|+|.+.+... ...+++..+..++.||+.||+|||+++ |+||||||+|||++.++. +||+|||+
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~ 179 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVKLGGFGV 179 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChHHeEEecCCCCCcEEEecCcc
Confidence 999999999999888632 345899999999999999999999997 999999999999987655 99999999
Q ss_pred cccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccccc
Q 004400 563 AKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELV 642 (756)
Q Consensus 563 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (756)
++....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... ... ..........
T Consensus 180 a~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-~~~--~i~~~~~~~~--- 252 (351)
T 3c0i_A 180 AIQLGESGL-VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKER-LFE--GIIKGKYKMN--- 252 (351)
T ss_dssp CEECCTTSC-BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHHH-HHH--HHHHTCCCCC---
T ss_pred eeEecCCCe-eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHHH-HHH--HHHcCCCCCC---
Confidence 987654332 233457999999999999989999999999999999999999999765321 111 1111110000
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 643 DTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
......+ ...+.+++.+||+.||++|||+.|+++.
T Consensus 253 -~~~~~~~----s~~~~~li~~~L~~dP~~R~s~~e~l~h 287 (351)
T 3c0i_A 253 -PRQWSHI----SESAKDLVRRMLMLDPAERITVYEALNH 287 (351)
T ss_dssp -HHHHTTS----CHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred -ccccccC----CHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000112 2348899999999999999999999863
No 84
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=5.2e-42 Score=361.57 Aligned_cols=258 Identities=26% Similarity=0.399 Sum_probs=206.4
Q ss_pred cCccccCcccCCCCccEEEeec-----cCCcEEEEEEcccc-CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeC--CeE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLL-----ADGTAIAVKQLSSK-SKQGNREFINEIGMISALQHPNLVKLYGCCIEG--NQL 487 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~ 487 (756)
+.|+..+.||+|+||.||+|++ .+++.||||++... .....+.+.+|++++++++||||+++++++.++ ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 4578889999999999999983 46889999999754 333457899999999999999999999999876 678
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
++||||+++|+|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 177 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAIE 177 (302)
T ss_dssp EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCC---cccCCCchheEEEcCCCCEEECccccccccc
Confidence 9999999999999999777678999999999999999999999997 9999999999999999999999999998765
Q ss_pred ccCc--ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchh------------hHHHHHHHHH
Q 004400 568 EENT--HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMF------------YLLDWALVLK 633 (756)
Q Consensus 568 ~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~------------~~~~~~~~~~ 633 (756)
.... .......||..|+|||.+.+..++.++||||||+++|||++|+.|+...... .........
T Consensus 178 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 256 (302)
T 4e5w_A 178 TDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTL- 256 (302)
T ss_dssp TTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHH-
T ss_pred CCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHH-
Confidence 4432 2233456888999999999999999999999999999999999886322110 000001111
Q ss_pred hcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccC
Q 004400 634 EQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECG 686 (756)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~ 686 (756)
..... ...+......+.+++.+||+.||.+|||+.++++.|+++
T Consensus 257 ~~~~~---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 300 (302)
T 4e5w_A 257 KEGKR---------LPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300 (302)
T ss_dssp HTTCC---------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred hccCC---------CCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 11111 111122234588999999999999999999999999864
No 85
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=7.9e-41 Score=349.87 Aligned_cols=254 Identities=30% Similarity=0.527 Sum_probs=204.8
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCccc-------HHHHHHHHHHHHhCCCCceeeEeeEEEeCCe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQG-------NREFINEIGMISALQHPNLVKLYGCCIEGNQ 486 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 486 (756)
.++|...+.||+|+||.||+|+. .+++.||+|++....... .+.+.+|++++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 46888999999999999999994 678999999986543221 167899999999999999999999987665
Q ss_pred EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC-----EEEccCC
Q 004400 487 LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN-----SKISDFG 561 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~-----~kl~DFG 561 (756)
++||||+++|+|.+.+......+++..+..++.|++.||+|||+.+ ++|+||||||+||+++.++. +||+|||
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~-~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg 174 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENAPVCAKVADFG 174 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCSCCSGGGEEESCCCTTCSCCEEECCCT
T ss_pred -eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcceEEEeccCCCCceeEEeCCCC
Confidence 6999999999999999877778999999999999999999999884 23999999999999988776 9999999
Q ss_pred ccccCcccCcceeeccccCccCCchHhhh--cCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccc
Q 004400 562 LAKLDEEENTHISTRVAGTIGYMAPEYAM--RGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLM 639 (756)
Q Consensus 562 la~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 639 (756)
+++.... ......||+.|+|||++. ...++.++|||||||++|||++|+.||......... ............
T Consensus 175 ~~~~~~~----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~-~~~~~~~~~~~~ 249 (287)
T 4f0f_A 175 LSQQSVH----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIK-FINMIREEGLRP 249 (287)
T ss_dssp TCBCCSS----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHH-HHHHHHHSCCCC
T ss_pred ccccccc----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHH-HHHHHhccCCCC
Confidence 9975433 234467999999999984 455789999999999999999999999654432221 111111211111
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhcc
Q 004400 640 ELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLEC 685 (756)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~ 685 (756)
.. ...++ ..+.+++.+||+.||++|||+.|+++.|++
T Consensus 250 ~~-----~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ 286 (287)
T 4f0f_A 250 TI-----PEDCP----PRLRNVIELCWSGDPKKRPHFSYIVKELSE 286 (287)
T ss_dssp CC-----CTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred CC-----CcccC----HHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 11 11222 348899999999999999999999999985
No 86
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-41 Score=364.79 Aligned_cols=260 Identities=28% Similarity=0.404 Sum_probs=209.3
Q ss_pred hhcCccccCcccCCCCccEEEeec------cCCcEEEEEEcccc-CcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCC
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL------ADGTAIAVKQLSSK-SKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGN 485 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 485 (756)
..++|...+.||+|+||.||+|+. .++..||||.+... .....+.+.+|+.+++++ +||||+++++++.+++
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 457899999999999999999985 24568999999754 233457799999999999 8999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHHhcCC----------------------CCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCC
Q 004400 486 QLLLIYEYLENNSLARALFEHRL----------------------KLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIK 543 (756)
Q Consensus 486 ~~~lV~e~~~~gsL~~~l~~~~~----------------------~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dik 543 (756)
..++||||+++|+|.+++..... .+++..+..++.||+.||+|||+.| |+|||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dik 199 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLA 199 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT---EEETTCS
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCC
Confidence 99999999999999999975432 3799999999999999999999997 9999999
Q ss_pred CCceEecCCCCEEEccCCccccCcccCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccc
Q 004400 544 ATNVLLDKDLNSKISDFGLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKED 621 (756)
Q Consensus 544 p~Nill~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~ 621 (756)
|+||+++.++.+||+|||+++........ ......||+.|+|||.+.+..++.++|||||||++|||+| |+.||....
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 279 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP 279 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence 99999999999999999999866543332 2334568889999999999999999999999999999998 999996554
Q ss_pred hhhHHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 622 MFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
...... .......... .....+ ..+.+++.+||+.||.+||++.++++.|+....
T Consensus 280 ~~~~~~---~~~~~~~~~~-----~~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 334 (344)
T 1rjb_A 280 VDANFY---KLIQNGFKMD-----QPFYAT----EEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLA 334 (344)
T ss_dssp CSHHHH---HHHHTTCCCC-----CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred cHHHHH---HHHhcCCCCC-----CCCCCC----HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHH
Confidence 322111 1111111111 111222 348899999999999999999999999996644
No 87
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=4.8e-41 Score=365.40 Aligned_cols=247 Identities=22% Similarity=0.316 Sum_probs=197.9
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC---cccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS---KQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 489 (756)
.++|+..+.||+|+||.||+|+. .+++.||+|++++.. ......+.+|..++.++ +|||||+++++|.+++..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 46789999999999999999995 568899999997642 22334578899999887 89999999999999999999
Q ss_pred EEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 490 IYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
||||+++|+|.+++... ..+++..+..++.||+.||+|||++| |+||||||+|||++.++.+||+|||+++.....
T Consensus 131 V~E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFGla~~~~~~ 206 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 206 (396)
T ss_dssp EEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred EEEcCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEECCCCCEEEeecceeeecccC
Confidence 99999999999999754 47999999999999999999999997 999999999999999999999999999853322
Q ss_pred CcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhh-----HHHHHHHHHhcCcccccccc
Q 004400 570 NTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFY-----LLDWALVLKEQGKLMELVDT 644 (756)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 644 (756)
. ......+||+.|+|||++.+..++.++|||||||++|||++|+.||....... ...+..........
T Consensus 207 ~-~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~------ 279 (396)
T 4dc2_A 207 G-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI------ 279 (396)
T ss_dssp T-CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCC------
T ss_pred C-CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhcccc------
Confidence 2 22345789999999999999999999999999999999999999995332111 00111111111110
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCH
Q 004400 645 NPGSNFDKEQVMVMINVALLCANASPTIRPSM 676 (756)
Q Consensus 645 ~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~ 676 (756)
.++......+.+++.+||+.||++||++
T Consensus 280 ----~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 280 ----RIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp ----CCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred ----CCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 1111122348899999999999999995
No 88
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=3.5e-41 Score=351.45 Aligned_cols=257 Identities=26% Similarity=0.384 Sum_probs=206.7
Q ss_pred hhcCccccCcccCCCCccEEEeeccC----CcEEEEEEcccc-CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLAD----GTAIAVKQLSSK-SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 488 (756)
..++|...+.||+|+||.||+|+..+ +..||+|.+... .....+.+.+|+.++++++||||+++++++.+ +..+
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~ 88 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTW 88 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCE
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCE
Confidence 45688999999999999999998532 346999998765 33345779999999999999999999999865 4568
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
+||||+++++|.+++......+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++....
T Consensus 89 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 165 (281)
T 3cc6_A 89 IIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESIN---CVHRDIAVRNILVASPECVKLGDFGLSRYIED 165 (281)
T ss_dssp EEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEEETTEEEECCCCGGGCC--
T ss_pred EEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEECCCCcEEeCccCCCccccc
Confidence 999999999999999877677999999999999999999999997 99999999999999999999999999987655
Q ss_pred cCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 569 ENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
..........+|+.|+|||.+.+..++.++||||||+++|||++ |+.||........... ... ..... ..
T Consensus 166 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~---~~~-~~~~~-----~~ 236 (281)
T 3cc6_A 166 EDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGV---LEK-GDRLP-----KP 236 (281)
T ss_dssp -------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHH---HHH-TCCCC-----CC
T ss_pred ccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHH---Hhc-CCCCC-----CC
Confidence 44333444567889999999999999999999999999999998 9999965544333221 111 11111 11
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
..++ ..+.+++.+||+.||++||++.|+++.|+.+.
T Consensus 237 ~~~~----~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~ 272 (281)
T 3cc6_A 237 DLCP----PVLYTLMTRCWDYDPSDRPRFTELVCSLSDVY 272 (281)
T ss_dssp TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCC----HHHHHHHHHHccCCchhCcCHHHHHHHHHHHH
Confidence 1223 34889999999999999999999999998653
No 89
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=2.7e-41 Score=353.76 Aligned_cols=251 Identities=24% Similarity=0.396 Sum_probs=206.1
Q ss_pred hcCccccCcccCCCCccEEEeecc-CC-------cEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLA-DG-------TAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQ 486 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 486 (756)
.++|...+.||+|+||.||+|+.. ++ ..||+|.+........+.+.+|++++++++||||+++++++.+++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 457889999999999999999854 33 4799999977666667889999999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC--------EEEc
Q 004400 487 LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN--------SKIS 558 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~--------~kl~ 558 (756)
.++||||+++|+|.+++......+++..+..++.|++.||+|||+++ |+||||||+||+++.++. +||+
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~ 163 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENT---LIHGNVCAKNILLIREEDRKTGNPPFIKLS 163 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEEECCBGGGTBCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCC---eECCCcCcceEEEecCCcccccccceeeec
Confidence 99999999999999999877666999999999999999999999997 999999999999998887 9999
Q ss_pred cCCccccCcccCcceeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCC-ccchhhHHHHHHHHHhcC
Q 004400 559 DFGLAKLDEEENTHISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVT-KEDMFYLLDWALVLKEQG 636 (756)
Q Consensus 559 DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~-~~~~~~~~~~~~~~~~~~ 636 (756)
|||+++..... ....||+.|+|||++.+ ..++.++||||||+++|||++|+.|+. ..+...... ......
T Consensus 164 Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~---~~~~~~ 235 (289)
T 4fvq_A 164 DPGISITVLPK-----DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQ---FYEDRH 235 (289)
T ss_dssp CCCSCTTTSCH-----HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHH---HHHTTC
T ss_pred cCcccccccCc-----cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHH---HhhccC
Confidence 99999754332 23458999999999987 679999999999999999999665553 333222111 111111
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 637 KLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.. ... . ...+.+++.+||+.||++|||+.|+++.|+++..
T Consensus 236 ~~---~~~-----~----~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~ 275 (289)
T 4fvq_A 236 QL---PAP-----K----AAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT 275 (289)
T ss_dssp CC---CCC-----S----SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred CC---CCC-----C----CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 11 111 1 1137899999999999999999999999996644
No 90
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=8.5e-41 Score=359.28 Aligned_cols=262 Identities=19% Similarity=0.245 Sum_probs=200.3
Q ss_pred hcCccccCcccCCCCccEEEeecc----CCcEEEEEEccccCcc-----------cHHHHHHHHHHHHhCCCCceeeEee
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLA----DGTAIAVKQLSSKSKQ-----------GNREFINEIGMISALQHPNLVKLYG 479 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv~l~~ 479 (756)
.++|...+.||+|+||.||+|... ++..||||.+...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 357889999999999999999964 6788999998654221 1234678889999999999999999
Q ss_pred EEEe----CCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCC--
Q 004400 480 CCIE----GNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDL-- 553 (756)
Q Consensus 480 ~~~~----~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~-- 553 (756)
++.+ +...++||||+ +++|.+++.... .+++..+..++.||+.||+|||+.+ |+||||||+|||++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~ 190 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIHENE---YVHGDIKAANLLLGYKNPD 190 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEESSSTT
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCcCHHHEEEccCCCC
Confidence 9988 78899999999 999999987554 7999999999999999999999996 99999999999999887
Q ss_pred CEEEccCCccccCcccCcc------eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCcc--chhhH
Q 004400 554 NSKISDFGLAKLDEEENTH------ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKE--DMFYL 625 (756)
Q Consensus 554 ~~kl~DFGla~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~--~~~~~ 625 (756)
.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||++|+.||... +....
T Consensus 191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~ 270 (345)
T 2v62_A 191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAV 270 (345)
T ss_dssp SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHH
T ss_pred cEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHH
Confidence 9999999999866433211 113457999999999999999999999999999999999999999542 21111
Q ss_pred HHHHHHHHhcCcccccc-ccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 626 LDWALVLKEQGKLMELV-DTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 626 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
........ . .....+ .......++. .+.+++.+||+.||++||++.+|++.|+...
T Consensus 271 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 271 QTAKTNLL-D-ELPQSVLKWAPSGSSCC----EIAQFLVCAHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp HHHHHHHH-H-TTTHHHHHHSCTTSCCH----HHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred HHHHHhhc-c-cccHHHHhhccccccHH----HHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence 11111111 1 111111 1111112333 4889999999999999999999999999753
No 91
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=5.2e-41 Score=360.70 Aligned_cols=249 Identities=22% Similarity=0.321 Sum_probs=205.3
Q ss_pred hhcCccccCcccCCCCccEEEeecc-CCcEEEEEEcccc---CcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSK---SKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 488 (756)
..++|+..+.||+|+||.||+|+.. +++.||||+++.. .....+.+.+|..++..+ +||||+++++++.+.+..|
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 3568999999999999999999954 5889999999754 223456788999999988 8999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
+||||+++|+|.+++.... .+++..+..++.||+.||+|||+.| |+||||||+|||++.++.+||+|||+++....
T Consensus 98 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 173 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 173 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence 9999999999999997543 6999999999999999999999997 99999999999999999999999999985432
Q ss_pred cCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCC
Q 004400 569 ENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGS 648 (756)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (756)
... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||...+........ ... .. . ...
T Consensus 174 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i---~~~-~~-~-----~p~ 242 (353)
T 2i0e_A 174 DGV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSI---MEH-NV-A-----YPK 242 (353)
T ss_dssp TTC-CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HHC-CC-C-----CCT
T ss_pred CCc-ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHH---HhC-CC-C-----CCC
Confidence 222 234568999999999999999999999999999999999999999776654433211 111 10 0 111
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCC-----HHHHHH
Q 004400 649 NFDKEQVMVMINVALLCANASPTIRPS-----MSSVLR 681 (756)
Q Consensus 649 ~~~~~~~~~l~~l~~~c~~~~P~~RPt-----~~ev~~ 681 (756)
.++ ..+.+++.+|++.||++||+ +.++++
T Consensus 243 ~~s----~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 243 SMS----KEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp TSC----HHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred CCC----HHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 223 34889999999999999995 466654
No 92
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-41 Score=361.13 Aligned_cols=247 Identities=26% Similarity=0.381 Sum_probs=203.0
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|+ ..+++.||||++... .......+.+|+.+++.++||||+++++++.+++..++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 3688999999999999999999 468899999998653 122346789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+ +|+|.+++... ..+++..+..++.|++.||+|||+.| |+||||||+|||+++++.+||+|||+++......
T Consensus 88 ~E~~-~g~l~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~ 162 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEK-KRMTEDEGRRFFQQIICAIEYCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN 162 (336)
T ss_dssp ECCC-CEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSB
T ss_pred EECC-CCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCchhhEEEcCCCCEEEEEeccceeccCCc
Confidence 9999 78999988754 47999999999999999999999997 9999999999999999999999999998655432
Q ss_pred cceeeccccCccCCchHhhhcCCC-CcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHL-TEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
. ....+||+.|+|||++.+..+ +.++|||||||++|+|++|+.||......... ..+.... ..
T Consensus 163 ~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~-------------~~i~~~~-~~ 226 (336)
T 3h4j_B 163 F--LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLF-------------KKVNSCV-YV 226 (336)
T ss_dssp T--TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCB-------------CCCCSSC-CC
T ss_pred c--cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHH-------------HHHHcCC-CC
Confidence 2 234579999999999987765 78999999999999999999999654322111 1111000 01
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.+......+.+++.+|++.||.+|||+.|+++.
T Consensus 227 ~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 259 (336)
T 3h4j_B 227 MPDFLSPGAQSLIRRMIVADPMQRITIQEIRRD 259 (336)
T ss_dssp CCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred CcccCCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence 111223348899999999999999999999764
No 93
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=3.6e-41 Score=350.96 Aligned_cols=257 Identities=31% Similarity=0.464 Sum_probs=211.2
Q ss_pred hhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
..++|...+.||+|+||.||+|...+++.||||.+.... ...+.+.+|++++++++||||+++++++. ++..++||||
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~ 88 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEY 88 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEec
Confidence 346788999999999999999998888899999987543 34578999999999999999999999986 4568999999
Q ss_pred cCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcc
Q 004400 494 LENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTH 572 (756)
Q Consensus 494 ~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~ 572 (756)
+++++|.+++... ...+++..+..++.|++.||+|||+.| |+||||||+||++++++.+||+|||+++........
T Consensus 89 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 165 (279)
T 1qpc_A 89 MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 165 (279)
T ss_dssp CTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEE
T ss_pred CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHhhEEEcCCCCEEECCCcccccccCcccc
Confidence 9999999998643 236899999999999999999999997 999999999999999999999999999876554433
Q ss_pred eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCC
Q 004400 573 ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFD 651 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (756)
......++..|+|||.+.+..++.++||||||+++|||++ |+.||........... ... +... .....++
T Consensus 166 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~---~~~-~~~~-----~~~~~~~ 236 (279)
T 1qpc_A 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQN---LER-GYRM-----VRPDNCP 236 (279)
T ss_dssp CCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHH---HHT-TCCC-----CCCTTCC
T ss_pred cccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHH---Hhc-ccCC-----CCccccc
Confidence 3344567889999999998889999999999999999999 8999976554332221 111 1111 1111223
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 652 KEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 652 ~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
..+.+++.+|++.||++|||+.++++.|+.+..
T Consensus 237 ----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 269 (279)
T 1qpc_A 237 ----EELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT 269 (279)
T ss_dssp ----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhccChhhCCCHHHHHHHHHHHHH
Confidence 348899999999999999999999999996543
No 94
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=1.4e-41 Score=386.07 Aligned_cols=259 Identities=29% Similarity=0.450 Sum_probs=214.1
Q ss_pred hhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
..++|...+.||+|+||.||+|.+.++..||||+++... ...+.|.+|+++|++++|||||++++++.+ +..++||||
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~ 342 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 342 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeeh
Confidence 456788999999999999999998888889999997643 345789999999999999999999999876 678999999
Q ss_pred cCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcc
Q 004400 494 LENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTH 572 (756)
Q Consensus 494 ~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~ 572 (756)
|++|+|.+++... ...+++..+..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++........
T Consensus 343 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~ 419 (535)
T 2h8h_A 343 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT 419 (535)
T ss_dssp CTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHH
T ss_pred hcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEEcCCCcEEEcccccceecCCCcee
Confidence 9999999999743 346899999999999999999999996 999999999999999999999999999876543222
Q ss_pred eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCC
Q 004400 573 ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFD 651 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (756)
......++..|+|||++....++.++|||||||++|||++ |+.||............ ..+..... ...++
T Consensus 420 ~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i----~~~~~~~~-----~~~~~ 490 (535)
T 2h8h_A 420 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQV----ERGYRMPC-----PPECP 490 (535)
T ss_dssp TTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHH----HTTCCCCC-----CTTCC
T ss_pred cccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH----HcCCCCCC-----CCCCC
Confidence 2233457889999999999999999999999999999999 99999765544333211 11111111 11223
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcccc
Q 004400 652 KEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDVL 690 (756)
Q Consensus 652 ~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~~ 690 (756)
..+.+++.+||+.||++|||+.+|++.|+.+....
T Consensus 491 ----~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~ 525 (535)
T 2h8h_A 491 ----ESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 525 (535)
T ss_dssp ----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCC
T ss_pred ----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhcc
Confidence 34889999999999999999999999999875543
No 95
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=358.20 Aligned_cols=245 Identities=26% Similarity=0.324 Sum_probs=195.8
Q ss_pred cCccccCcccCCCCccEEEeecc-CCcEEEEEEccccC--cccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKS--KQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~ 491 (756)
++|+..+.||+|+||+||+|+.. +|+.||||++.... ......+..|+..+.++ +||||++++++|.+++..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 57899999999999999999954 79999999986542 22334556666666555 8999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
||+ +++|.+++......+++..+..++.|++.||+|||+.+ |+||||||+|||++.++.+||+|||+++.......
T Consensus 137 e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~ 212 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA 212 (311)
T ss_dssp ECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECGGGCEEECCCTTCEECC----
T ss_pred ecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEccceeeeecccCCC
Confidence 999 67999999877778999999999999999999999996 99999999999999999999999999986544322
Q ss_pred ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFD 651 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (756)
.....||+.|+|||++.+ .++.++|||||||++|||++|..|+......... ......... ....
T Consensus 213 --~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~-------~~~~~~~~~----~~~~- 277 (311)
T 3p1a_A 213 --GEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQL-------RQGYLPPEF----TAGL- 277 (311)
T ss_dssp ----CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHH-------TTTCCCHHH----HTTS-
T ss_pred --CcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHH-------hccCCCccc----ccCC-
Confidence 234569999999998875 7999999999999999999998777554322111 111111000 0112
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 652 KEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 652 ~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
...+.+++.+|++.||++|||+.|+++.
T Consensus 278 ---~~~l~~li~~~L~~dP~~Rpt~~ell~h 305 (311)
T 3p1a_A 278 ---SSELRSVLVMMLEPDPKLRATAEALLAL 305 (311)
T ss_dssp ---CHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred ---CHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence 2358899999999999999999999864
No 96
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=6.3e-41 Score=351.06 Aligned_cols=260 Identities=30% Similarity=0.455 Sum_probs=196.7
Q ss_pred hhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
..++|...+.||+|+||.||+|+... .||||.++... ....+.+.+|++++++++||||+++++++ ..+..++||
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~ 98 (289)
T 3og7_A 22 PDGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT 98 (289)
T ss_dssp CTTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred CccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence 34678899999999999999998643 59999987543 33446789999999999999999999965 556789999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc-C
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE-N 570 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~-~ 570 (756)
||+++++|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++..... .
T Consensus 99 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 175 (289)
T 3og7_A 99 QWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175 (289)
T ss_dssp ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred EecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCC---cccccCccceEEECCCCCEEEccceeccccccccc
Confidence 999999999999877778999999999999999999999997 999999999999999999999999999865432 2
Q ss_pred cceeeccccCccCCchHhhh---cCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 571 THISTRVAGTIGYMAPEYAM---RGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
........||+.|+|||.+. ...++.++||||||+++|||++|+.||.......... .............. ..
T Consensus 176 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~---~~~~~~~~~~~~~~-~~ 251 (289)
T 3og7_A 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQII---EMVGRGSLSPDLSK-VR 251 (289)
T ss_dssp --------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHH---HHHHHTSCCCCTTS-SC
T ss_pred cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHH---HHhcccccCcchhh-cc
Confidence 22234467999999999986 5678899999999999999999999996544322211 11111111111110 11
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
..+ +..+.+++.+||+.+|++||++.++++.|+++.
T Consensus 252 ~~~----~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 252 SNC----PKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp TTS----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred ccC----CHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 122 345889999999999999999999999999764
No 97
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=2e-41 Score=359.01 Aligned_cols=259 Identities=27% Similarity=0.427 Sum_probs=211.5
Q ss_pred hhcCccccCcccCCCCccEEEeec------cCCcEEEEEEccccCc-ccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCC
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL------ADGTAIAVKQLSSKSK-QGNREFINEIGMISAL-QHPNLVKLYGCCIEGN 485 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 485 (756)
..++|...+.||+|+||.||+|+. .+++.||||.+..... ...+.+.+|+.+++++ +||||+++++++.+++
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~ 100 (313)
T 1t46_A 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 100 (313)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence 346888999999999999999974 3567899999975432 3456789999999999 9999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHHhcCC-----------------CCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceE
Q 004400 486 QLLLIYEYLENNSLARALFEHRL-----------------KLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVL 548 (756)
Q Consensus 486 ~~~lV~e~~~~gsL~~~l~~~~~-----------------~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nil 548 (756)
..++||||+++|+|.+++..... .+++..+..++.|++.||+|||+.+ |+||||||+||+
T Consensus 101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil 177 (313)
T 1t46_A 101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNIL 177 (313)
T ss_dssp SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEE
T ss_pred CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccceEE
Confidence 99999999999999999986542 4899999999999999999999996 999999999999
Q ss_pred ecCCCCEEEccCCccccCcccCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHH
Q 004400 549 LDKDLNSKISDFGLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLL 626 (756)
Q Consensus 549 l~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~ 626 (756)
++.++.+||+|||+++........ ......||+.|+|||.+.+..++.++||||||+++|||++ |+.||.........
T Consensus 178 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~ 257 (313)
T 1t46_A 178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKF 257 (313)
T ss_dssp EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHH
T ss_pred EcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHH
Confidence 999999999999999876544332 2334567889999999999999999999999999999999 99999655432211
Q ss_pred HHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 627 DWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
. ... ..... .......+ ..+.+++.+||+.||.+|||+.|+++.|++..
T Consensus 258 ~--~~~-~~~~~-----~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 306 (313)
T 1t46_A 258 Y--KMI-KEGFR-----MLSPEHAP----AEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI 306 (313)
T ss_dssp H--HHH-HHTCC-----CCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred H--HHh-ccCCC-----CCCcccCC----HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 1 111 11111 01111222 34889999999999999999999999998653
No 98
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.4e-41 Score=358.90 Aligned_cols=258 Identities=26% Similarity=0.461 Sum_probs=204.6
Q ss_pred hcCccccCcccCCCCccEEEeeccC-----CcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLAD-----GTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 488 (756)
.++|...+.||+|+||.||+|.... +..||||.+.... ......+.+|+.++++++||||+++++++.+.+..+
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 122 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM 122 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence 3577888999999999999998542 2359999997542 334457899999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
+||||+++|+|.+++......+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++....
T Consensus 123 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~ 199 (333)
T 1mqb_A 123 IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLED 199 (333)
T ss_dssp EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred EEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChheEEECCCCcEEECCCCcchhhcc
Confidence 999999999999999877678999999999999999999999997 99999999999999999999999999987654
Q ss_pred cCcc--eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccC
Q 004400 569 ENTH--ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTN 645 (756)
Q Consensus 569 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (756)
.... ......+|+.|+|||.+.+..++.++|||||||++|||++ |+.||........... ... +....
T Consensus 200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~---~~~-~~~~~----- 270 (333)
T 1mqb_A 200 DPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKA---IND-GFRLP----- 270 (333)
T ss_dssp -----------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHH---HHT-TCCCC-----
T ss_pred ccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHH---HHC-CCcCC-----
Confidence 3221 1223456889999999999999999999999999999999 9999966554333221 111 11110
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 646 PGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 646 ~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
..... ...+.+++.+||+.+|++||++.++++.|+++..
T Consensus 271 ~~~~~----~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~ 309 (333)
T 1mqb_A 271 TPMDC----PSAIYQLMMQCWQQERARRPKFADIVSILDKLIR 309 (333)
T ss_dssp CCTTC----BHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred CcccC----CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 11122 2348899999999999999999999999987654
No 99
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-40 Score=347.93 Aligned_cols=263 Identities=24% Similarity=0.312 Sum_probs=202.9
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC-----cccHHHHHHHHHHHHhCC---CCceeeEeeEEEeC
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS-----KQGNREFINEIGMISALQ---HPNLVKLYGCCIEG 484 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 484 (756)
.+++|+..+.||+|+||+||+|+. .+++.||||++.... ......+.+|++++++++ ||||++++++|...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 467899999999999999999994 678999999986432 112356777888777764 99999999999876
Q ss_pred C-----eEEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEc
Q 004400 485 N-----QLLLIYEYLENNSLARALFEHR-LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKIS 558 (756)
Q Consensus 485 ~-----~~~lV~e~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~ 558 (756)
. ..++||||+. |+|.+++.... ..+++..+..++.|++.||+|||+++ |+||||||+||+++.++.+||+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~ 162 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLA 162 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCTTTEEECTTSCEEEC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCEEEe
Confidence 5 5899999997 59999997543 34999999999999999999999997 9999999999999999999999
Q ss_pred cCCccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcc
Q 004400 559 DFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKL 638 (756)
Q Consensus 559 DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 638 (756)
|||+++....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.....................
T Consensus 163 Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~ 240 (308)
T 3g33_A 163 DFGLARIYSYQMA--LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPE 240 (308)
T ss_dssp SCSCTTTSTTCCC--SGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCT
T ss_pred eCccccccCCCcc--cCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCh
Confidence 9999986543322 24467999999999999999999999999999999999999999776655443332222111110
Q ss_pred ccccc------cCC--CCCC-----CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 639 MELVD------TNP--GSNF-----DKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 639 ~~~~~------~~~--~~~~-----~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..... ... .... .++....+.+++.+|++.||++|||+.|+++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 297 (308)
T 3g33_A 241 DDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH 297 (308)
T ss_dssp TTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence 00000 000 0000 01123458899999999999999999999863
No 100
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-41 Score=359.91 Aligned_cols=257 Identities=26% Similarity=0.436 Sum_probs=203.1
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcE----EEEEEcccc-CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTA----IAVKQLSSK-SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~----vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 488 (756)
.++|+..+.||+|+||.||+|+. .+++. ||+|.+... .....+.+.+|+.++++++||||++++++|.++. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 46789999999999999999994 45554 577776543 3445678999999999999999999999998765 78
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
+|+||+.+|+|.+++......+++..+..++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 93 ~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~ 169 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTC------
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCC---CcCCCCCHHHEEEcCCCCEEEccCcceeEccC
Confidence 999999999999999887778999999999999999999999997 99999999999999999999999999987644
Q ss_pred cCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCC
Q 004400 569 ENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNP 646 (756)
Q Consensus 569 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (756)
.... ......||+.|+|||.+.+..++.++|||||||++|||++ |+.||............ ....... .
T Consensus 170 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~----~~~~~~~-----~ 240 (327)
T 3lzb_A 170 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSIL----EKGERLP-----Q 240 (327)
T ss_dssp ----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHH----HTTCCCC-----C
T ss_pred ccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH----HcCCCCC-----C
Confidence 3222 2233457889999999999999999999999999999999 99999765544332211 1111111 1
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 647 GSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 647 ~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
...+ ...+.+++.+||+.||.+||++.|+++.|+.+..
T Consensus 241 ~~~~----~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 278 (327)
T 3lzb_A 241 PPIC----TIDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp CTTB----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred CccC----CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 1112 2348899999999999999999999999997654
No 101
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=4.4e-41 Score=361.28 Aligned_cols=248 Identities=28% Similarity=0.463 Sum_probs=204.0
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCc---ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSK---QGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.+.|...+.||+|+||.||+|+ ..+++.||||++..... ...+.+.+|++++++++||||+++++++.+++..++|
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 3468888999999999999999 46899999999865422 2335788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+. |+|.+.+......+++..+..++.|++.||+|||+.+ |+||||||+|||++.++.+||+|||+++.....
T Consensus 133 ~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~- 207 (348)
T 1u5q_A 133 MEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA- 207 (348)
T ss_dssp EECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-
T ss_pred EecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEeeccCceecCCC-
Confidence 99998 6888888766678999999999999999999999997 999999999999999999999999999865432
Q ss_pred cceeeccccCccCCchHhhh---cCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 571 THISTRVAGTIGYMAPEYAM---RGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
....||+.|+|||++. ...++.++|||||||++|||++|+.||...+...... ...... .... ..
T Consensus 208 ----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~---~~~~~~-~~~~----~~ 275 (348)
T 1u5q_A 208 ----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALY---HIAQNE-SPAL----QS 275 (348)
T ss_dssp ----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH---HHHHSC-CCCC----CC
T ss_pred ----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHH---HHHhcC-CCCC----CC
Confidence 2357999999999985 4678999999999999999999999997655433221 111111 1111 11
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHh
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRML 683 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L 683 (756)
..++ ..+.+++.+||+.||++|||+.++++..
T Consensus 276 ~~~~----~~l~~li~~~l~~dP~~Rps~~~ll~h~ 307 (348)
T 1u5q_A 276 GHWS----EYFRNFVDSCLQKIPQDRPTSEVLLKHR 307 (348)
T ss_dssp TTSC----HHHHHHHHHHTCSSGGGSCCHHHHTTCH
T ss_pred CCCC----HHHHHHHHHHcccChhhCcCHHHHhhCh
Confidence 1223 3488999999999999999999998653
No 102
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=1.1e-40 Score=355.54 Aligned_cols=249 Identities=25% Similarity=0.336 Sum_probs=196.7
Q ss_pred hcCccccCcccCCCCccEEEeec----cCCcEEEEEEccccC----cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL----ADGTAIAVKQLSSKS----KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQ 486 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 486 (756)
.++|+..+.||+|+||.||+|+. .+++.||+|+++... ......+.+|+.+++.++||||+++++++.+++.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 45789999999999999999985 478999999997642 2234567889999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 487 LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
.++||||+++|+|.+++... ..+++..+..++.||+.||+|||++| |+||||||+|||++.++.+||+|||+++..
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~ 171 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLERE-GIFMEDTACFYLAEISMALGHLHQKG---IIYRDLKPENIMLNHQGHVKLTDFGLCKES 171 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred EEEEEeCCCCCcHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCC---EEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence 99999999999999999754 36899999999999999999999997 999999999999999999999999999754
Q ss_pred cccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCC
Q 004400 567 EEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNP 646 (756)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (756)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...+........ ..... ..
T Consensus 172 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i--~~~~~--------~~ 240 (327)
T 3a62_A 172 IHDGT-VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKI--LKCKL--------NL 240 (327)
T ss_dssp --------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH--HHTCC--------CC
T ss_pred ccCCc-cccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHH--HhCCC--------CC
Confidence 33222 233467999999999999999999999999999999999999999776544332211 11110 01
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCCC-----CHHHHHHH
Q 004400 647 GSNFDKEQVMVMINVALLCANASPTIRP-----SMSSVLRM 682 (756)
Q Consensus 647 ~~~~~~~~~~~l~~l~~~c~~~~P~~RP-----t~~ev~~~ 682 (756)
...++ ..+.+++.+||+.||++|| ++.|+++.
T Consensus 241 p~~~~----~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h 277 (327)
T 3a62_A 241 PPYLT----QEARDLLKKLLKRNAASRLGAGPGDAGEVQAH 277 (327)
T ss_dssp CTTSC----HHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred CCCCC----HHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence 11222 3488999999999999999 77787663
No 103
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=1.3e-41 Score=361.47 Aligned_cols=267 Identities=27% Similarity=0.403 Sum_probs=205.3
Q ss_pred CccccCcccCCCCccEEEeec-----cCCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeC--CeEE
Q 004400 417 NFATDNNIGEGGFGPVYKGLL-----ADGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEG--NQLL 488 (756)
Q Consensus 417 ~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~ 488 (756)
.|...+.||+|+||.||+|.+ .+++.||||++.... ....+.+.+|++++++++||||+++++++.+. ...+
T Consensus 32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 111 (318)
T 3lxp_A 32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQ 111 (318)
T ss_dssp GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEE
T ss_pred HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEE
Confidence 347889999999999988753 368899999997643 23456789999999999999999999999884 6789
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
+||||+++|+|.+++... .+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++....
T Consensus 112 lv~e~~~~~~L~~~l~~~--~~~~~~~~~i~~~l~~~l~~LH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 186 (318)
T 3lxp_A 112 LVMEYVPLGSLRDYLPRH--SIGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE 186 (318)
T ss_dssp EEECCCTTCBHHHHGGGS--CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEECCT
T ss_pred EEEecccCCcHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEEcCCCCEEECCccccccccc
Confidence 999999999999998654 4899999999999999999999997 99999999999999999999999999987654
Q ss_pred cCcc--eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhH--HHHHHHHHhcCcccccccc
Q 004400 569 ENTH--ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYL--LDWALVLKEQGKLMELVDT 644 (756)
Q Consensus 569 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 644 (756)
.... ......||..|+|||++.+..++.++||||||+++|||++|+.||........ ..+...........+.+..
T Consensus 187 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (318)
T 3lxp_A 187 GHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLER 266 (318)
T ss_dssp TCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred cccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhc
Confidence 3322 23345688899999999998999999999999999999999999854322110 0000000000000111111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 645 NPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 645 ~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
......+......+.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 267 ~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~ 310 (318)
T 3lxp_A 267 GERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHE 310 (318)
T ss_dssp TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence 11111112223458999999999999999999999999986543
No 104
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=3e-40 Score=356.80 Aligned_cols=252 Identities=22% Similarity=0.285 Sum_probs=194.1
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
.++|...+.||+|+||.||+|+. .+++.||||++.... ...+.+.+|+.+++.++||||+++++++.+++..++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 46889999999999999999995 478999999996543 3346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC--EEEccCCccccCcccCc
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN--SKISDFGLAKLDEEENT 571 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~--~kl~DFGla~~~~~~~~ 571 (756)
+++|+|.+++.... .+++..+..++.|++.||+|||++| |+||||||+||+++.++. +||+|||+++......
T Consensus 98 ~~~~~L~~~l~~~~-~~~~~~~~~i~~ql~~~L~~LH~~~---ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~- 172 (361)
T 3uc3_A 98 ASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS- 172 (361)
T ss_dssp CCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTT---CCSCCCCGGGEEECSSSSCCEEECCCCCC--------
T ss_pred CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCceEEEeecCccccccccC-
Confidence 99999999997543 6999999999999999999999997 999999999999987765 9999999997433222
Q ss_pred ceeeccccCccCCchHhhhcCCCCcc-cchhhHHHHHHHHHhCCCCCCccchhhH-HHHHHHHHhcCccccccccCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHLTEK-ADVYSFGIVALEIVSGRSNVTKEDMFYL-LDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~slGv~l~elltg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
......||+.|+|||++.+..++.+ +|||||||++|||++|+.||........ ........... . ... ....
T Consensus 173 -~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~-~-~~~---~~~~ 246 (361)
T 3uc3_A 173 -QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVK-Y-SIP---DDIR 246 (361)
T ss_dssp ---------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTC-C-CCC---TTSC
T ss_pred -CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCC-C-CCC---CcCC
Confidence 1234579999999999988887665 8999999999999999999965433211 11111111111 0 000 1112
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.+ ..+.+++.+||+.||++|||+.|+++.
T Consensus 247 ~s----~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 247 IS----PECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp CC----HHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred CC----HHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 23 348899999999999999999999864
No 105
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=6.5e-41 Score=360.39 Aligned_cols=252 Identities=23% Similarity=0.330 Sum_probs=190.2
Q ss_pred hhcCccccCcccCCCCccEEEeecc-CCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
..++|...+.||+|+||.||+|+.. +++.||||++.... ..+.+.+|++++++++||||++++++|.+++..++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 4567999999999999999999954 68899999997542 34678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC---CCCEEEccCCccccCccc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK---DLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~---~~~~kl~DFGla~~~~~~ 569 (756)
|+++|+|.+++... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++. ++.+||+|||+++.....
T Consensus 129 ~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~ 204 (349)
T 2w4o_A 129 LVTGGELFDRIVEK-GYYSERDAADAVKQILEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ 204 (349)
T ss_dssp CCCSCBHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESSSSTTCCEEECCCC--------
T ss_pred eCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCcccEEEecCCCCCCEEEccCccccccCcc
Confidence 99999999999654 46899999999999999999999997 999999999999975 889999999999865432
Q ss_pred CcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 570 NTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
. ......||+.|+|||++.+..++.++|||||||++|||++|+.||......... +.. ... ... ... ......
T Consensus 205 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~-~~~-i~~-~~~-~~~-~~~~~~ 277 (349)
T 2w4o_A 205 V--LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFM-FRR-ILN-CEY-YFI-SPWWDE 277 (349)
T ss_dssp ----------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHH-HHH-HHT-TCC-CCC-TTTTTT
T ss_pred c--ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHH-HHH-HHh-CCC-ccC-Cchhhh
Confidence 2 223467999999999999989999999999999999999999999655432211 111 111 111 000 001112
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
. ...+.+++.+|++.||++|||+.|+++.
T Consensus 278 ~----~~~~~~li~~~L~~dP~~Rpt~~e~l~h 306 (349)
T 2w4o_A 278 V----SLNAKDLVRKLIVLDPKKRLTTFQALQH 306 (349)
T ss_dssp S----CHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred C----CHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 2 2348899999999999999999999874
No 106
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.5e-41 Score=350.58 Aligned_cols=254 Identities=26% Similarity=0.414 Sum_probs=208.1
Q ss_pred cCccccC-cccCCCCccEEEeecc---CCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 416 NNFATDN-NIGEGGFGPVYKGLLA---DGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 416 ~~~~~~~-~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
++|.... .||+|+||.||+|+.. ++..||||.+.... ....+.+.+|++++++++||||+++++++ +.+..++|
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv 87 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV 87 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence 4555555 9999999999999843 57889999997643 33456789999999999999999999999 56679999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++++|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++......
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~ 164 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGADD 164 (287)
T ss_dssp EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred EEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCchheEEEcCCCCEEECcccceeeeccCc
Confidence 9999999999999876678999999999999999999999997 9999999999999999999999999998765433
Q ss_pred cce--eeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 571 THI--STRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 571 ~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
... .....||+.|+|||++.+..++.++||||||+++|||++ |+.||............ ..+..... .
T Consensus 165 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i----~~~~~~~~-----~ 235 (287)
T 1u59_A 165 SYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFI----EQGKRMEC-----P 235 (287)
T ss_dssp CEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHH----HTTCCCCC-----C
T ss_pred ceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHH----hcCCcCCC-----C
Confidence 222 223457899999999998889999999999999999998 99999765544333211 11111111 1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccC
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECG 686 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~ 686 (756)
..++ ..+.+++.+||+.+|++||++.++++.|+++
T Consensus 236 ~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 270 (287)
T 1u59_A 236 PECP----PELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270 (287)
T ss_dssp TTCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCcC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1223 3588999999999999999999999999865
No 107
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.7e-41 Score=353.63 Aligned_cols=249 Identities=25% Similarity=0.396 Sum_probs=197.4
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCc--------------------------ccHHHHHHHHHHHH
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSK--------------------------QGNREFINEIGMIS 467 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~--------------------------~~~~~~~~E~~~l~ 467 (756)
.++|...+.||+|+||.||+|+ ..+++.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 3678899999999999999998 45789999999865421 11246889999999
Q ss_pred hCCCCceeeEeeEEEe--CCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCC
Q 004400 468 ALQHPNLVKLYGCCIE--GNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKAT 545 (756)
Q Consensus 468 ~l~h~niv~l~~~~~~--~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~ 545 (756)
+++||||+++++++.+ ++..++||||+++|+|.+++ ....+++..+..++.|++.||+|||+.+ |+||||||+
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~ 166 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP--TLKPLSEDQARFYFQDLIKGIEYLHYQK---IIHRDIKPS 166 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSS--CSSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHH
Confidence 9999999999999987 57899999999999998764 2347999999999999999999999997 999999999
Q ss_pred ceEecCCCCEEEccCCccccCcccCcceeeccccCccCCchHhhhcCC---CCcccchhhHHHHHHHHHhCCCCCCccch
Q 004400 546 NVLLDKDLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGH---LTEKADVYSFGIVALEIVSGRSNVTKEDM 622 (756)
Q Consensus 546 Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~slGv~l~elltg~~p~~~~~~ 622 (756)
||+++.++.+||+|||+++....... ......||+.|+|||.+.+.. ++.++|||||||++|||++|+.||.....
T Consensus 167 Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~ 245 (298)
T 2zv2_A 167 NLLVGEDGHIKIADFGVSNEFKGSDA-LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERI 245 (298)
T ss_dssp GEEECTTSCEEECCCTTCEECSSSSC-EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HEEECCCCCEEEecCCCccccccccc-cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccH
Confidence 99999999999999999986654332 233467999999999987654 47889999999999999999999976654
Q ss_pred hhHHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 623 FYLLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
..... ..... .. .. ......+ ..+.+++.+||+.||++||++.|+++
T Consensus 246 ~~~~~---~~~~~-~~-~~---~~~~~~~----~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 246 MCLHS---KIKSQ-AL-EF---PDQPDIA----EDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp HHHHH---HHHHC-CC-CC---CSSSCCC----HHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHH---HHhcc-cC-CC---CCccccC----HHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 33221 11111 11 11 0111233 34889999999999999999999865
No 108
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=1.7e-40 Score=345.38 Aligned_cols=250 Identities=22% Similarity=0.307 Sum_probs=205.2
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
.++|...+.||+|+||.||+|.. .++..||+|++........+.+.+|++++++++||||+++++++.+++..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence 45788999999999999999995 46789999999776556678899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe---cCCCCEEEccCCccccCcccC
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL---DKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill---~~~~~~kl~DFGla~~~~~~~ 570 (756)
+++++|.+++... ..+++..+..++.|++.||+|||+.+ |+||||||+||++ +.++.+||+|||++.......
T Consensus 88 ~~~~~L~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~ 163 (277)
T 3f3z_A 88 CTGGELFERVVHK-RVFRESDAARIMKDVLSAVAYCHKLN---VAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK 163 (277)
T ss_dssp CCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS
T ss_pred cCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc
Confidence 9999999998754 46899999999999999999999997 9999999999999 788899999999998655433
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
. .....||+.|+|||.+.+ .++.++||||||+++|||++|+.||........... ... +... .... ....+
T Consensus 164 ~--~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~---~~~-~~~~-~~~~-~~~~~ 234 (277)
T 3f3z_A 164 M--MRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLK---IRE-GTFT-FPEK-DWLNV 234 (277)
T ss_dssp C--BCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH---HHH-CCCC-CCHH-HHTTS
T ss_pred c--hhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHH---HHh-CCCC-CCch-hhhcC
Confidence 2 234579999999998865 499999999999999999999999976554332221 111 1110 0000 00012
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
...+.+++.+|++.||++||++.|+++
T Consensus 235 ----~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 235 ----SPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp ----CHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred ----CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 235889999999999999999999865
No 109
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=1e-40 Score=357.14 Aligned_cols=258 Identities=27% Similarity=0.446 Sum_probs=210.4
Q ss_pred hcCccccCcccCCCCccEEEeec--------cCCcEEEEEEccccC-cccHHHHHHHHHHHHhC-CCCceeeEeeEEEeC
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL--------ADGTAIAVKQLSSKS-KQGNREFINEIGMISAL-QHPNLVKLYGCCIEG 484 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 484 (756)
.++|...+.||+|+||.||+|.. .++..||||++.... ....+.+.+|+++++++ +||||+++++++.++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 46888999999999999999985 356789999997543 33456789999999999 899999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe
Q 004400 485 NQLLLIYEYLENNSLARALFEHR---------------LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL 549 (756)
Q Consensus 485 ~~~~lV~e~~~~gsL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill 549 (756)
+..++||||+++|+|.+++.... ..+++..+..++.||+.||+|||+.+ |+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCccceEEE
Confidence 99999999999999999997543 24899999999999999999999997 9999999999999
Q ss_pred cCCCCEEEccCCccccCcccCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHH
Q 004400 550 DKDLNSKISDFGLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLD 627 (756)
Q Consensus 550 ~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~ 627 (756)
+.++.+||+|||+++........ ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||..........
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~ 270 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 270 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHH
T ss_pred cCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHH
Confidence 99999999999999866543322 2233467889999999999889999999999999999999 999997655433322
Q ss_pred HHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 628 WALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.. .. ..... ....++ ..+.+++.+||+.+|.+||++.|+++.|+.+..
T Consensus 271 ~~---~~-~~~~~-----~~~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~ 318 (334)
T 2pvf_A 271 LL---KE-GHRMD-----KPANCT----NELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT 318 (334)
T ss_dssp HH---HH-TCCCC-----CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HH---hc-CCCCC-----CCccCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 11 11 11111 111223 348899999999999999999999999997654
No 110
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=4.8e-41 Score=357.63 Aligned_cols=261 Identities=25% Similarity=0.439 Sum_probs=212.6
Q ss_pred HHhhcCccccCcccCCCCccEEEeecc------CCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeC
Q 004400 412 KAATNNFATDNNIGEGGFGPVYKGLLA------DGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEG 484 (756)
Q Consensus 412 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 484 (756)
....++|...+.||+|+||.||+|+.. +++.||||.+.... ......+.+|+.++++++||||+++++++.++
T Consensus 21 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 100 (322)
T 1p4o_A 21 EVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG 100 (322)
T ss_dssp BCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSS
T ss_pred cchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccC
Confidence 345678999999999999999999854 47889999997543 23345789999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhcC---------CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCE
Q 004400 485 NQLLLIYEYLENNSLARALFEHR---------LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNS 555 (756)
Q Consensus 485 ~~~~lV~e~~~~gsL~~~l~~~~---------~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~ 555 (756)
+..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||++| |+||||||+||+++.++.+
T Consensus 101 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~NIli~~~~~~ 177 (322)
T 1p4o_A 101 QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTV 177 (322)
T ss_dssp SSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEECTTCCE
T ss_pred CccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCC---CccCCCccceEEEcCCCeE
Confidence 99999999999999999997432 45799999999999999999999997 9999999999999999999
Q ss_pred EEccCCccccCcccCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHH
Q 004400 556 KISDFGLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLK 633 (756)
Q Consensus 556 kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~ 633 (756)
||+|||+++........ ......||+.|+|||++.+..++.++||||||+++|||++ |+.||............
T Consensus 178 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~---- 253 (322)
T 1p4o_A 178 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFV---- 253 (322)
T ss_dssp EECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHH----
T ss_pred EECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHH----
Confidence 99999999865443222 2233467889999999999999999999999999999999 88998665543332211
Q ss_pred hcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 634 EQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
..+..... ....+ ..+.+++.+||+.||++||++.|+++.|++...
T Consensus 254 ~~~~~~~~-----~~~~~----~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 254 MEGGLLDK-----PDNCP----DMLFELMRMCWQYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp HTTCCCCC-----CTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred HcCCcCCC-----CCCCC----HHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence 11111111 11223 348899999999999999999999999996544
No 111
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=1.6e-40 Score=356.32 Aligned_cols=247 Identities=23% Similarity=0.315 Sum_probs=198.8
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC---cccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS---KQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 489 (756)
.++|+..+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|..+++++ +||||+++++++.+++..++
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 35788999999999999999995 568999999997542 22345678899999988 89999999999999999999
Q ss_pred EEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 490 IYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
||||+++|+|.+++... ..+++..+..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.....
T Consensus 88 v~e~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~ 163 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 163 (345)
T ss_dssp EECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCGGGCBCSCCT
T ss_pred EEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEEeccccccccCC
Confidence 99999999999999754 37999999999999999999999997 999999999999999999999999999854322
Q ss_pred CcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhh-----HHHHHHHHHhcCcccccccc
Q 004400 570 NTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFY-----LLDWALVLKEQGKLMELVDT 644 (756)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 644 (756)
. ......+||+.|+|||++.+..++.++|||||||++|||++|+.||....... .............. .
T Consensus 164 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~-~---- 237 (345)
T 3a8x_A 164 G-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI-R---- 237 (345)
T ss_dssp T-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCC-C----
T ss_pred C-CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCC-C----
Confidence 2 22345689999999999999999999999999999999999999995421110 00111111111111 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCH
Q 004400 645 NPGSNFDKEQVMVMINVALLCANASPTIRPSM 676 (756)
Q Consensus 645 ~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~ 676 (756)
....++ ..+.+++.+|++.||++||++
T Consensus 238 -~p~~~s----~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 238 -IPRSLS----VKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp -CCTTSC----HHHHHHHHHHTCSSTTTSTTC
T ss_pred -CCCCCC----HHHHHHHHHHhcCCHhHCCCC
Confidence 111223 348899999999999999995
No 112
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=2.6e-40 Score=345.34 Aligned_cols=252 Identities=22% Similarity=0.360 Sum_probs=206.5
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
.++|...+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|+.++++++||||+++++++.+++..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 46899999999999999999984 568999999986542 233467889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC---EEEccCCccccCcc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN---SKISDFGLAKLDEE 568 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~---~kl~DFGla~~~~~ 568 (756)
||+++|+|.+.+... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++.++. +||+|||++.....
T Consensus 85 e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 160 (284)
T 3kk8_A 85 DLVTGGELFEDIVAR-EFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 160 (284)
T ss_dssp CCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred ecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---cCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence 999999999988755 46999999999999999999999997 999999999999987655 99999999976554
Q ss_pred cCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCC
Q 004400 569 ENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGS 648 (756)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (756)
... .....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...+........ .. +.. ..... ...
T Consensus 161 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~---~~-~~~-~~~~~-~~~ 232 (284)
T 3kk8_A 161 SEA--WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQI---KA-GAY-DYPSP-EWD 232 (284)
T ss_dssp SCB--CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH-TCC-CCCTT-TTT
T ss_pred Ccc--ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHH---Hh-ccc-cCCch-hhc
Confidence 322 23467999999999999999999999999999999999999999776554333211 11 111 00000 111
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 649 NFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 649 ~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..+ ..+.+++.+|++.||++|||+.|+++.
T Consensus 233 ~~~----~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 233 TVT----PEAKSLIDSMLTVNPKKRITADQALKV 262 (284)
T ss_dssp TSC----HHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred ccC----HHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 223 348899999999999999999999763
No 113
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.8e-41 Score=360.29 Aligned_cols=252 Identities=22% Similarity=0.327 Sum_probs=197.0
Q ss_pred hhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCC--CceeeEeeEEEeCCeEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKS--KQGNREFINEIGMISALQH--PNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~l 489 (756)
..++|...+.||+|+||.||+|...+++.||||++.... ....+.+.+|+.++++++| |||+++++++.+++..++
T Consensus 7 ~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 86 (343)
T 3dbq_A 7 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 86 (343)
T ss_dssp SSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred ecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence 356789999999999999999998889999999986542 3334678999999999976 999999999999999999
Q ss_pred EEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 490 IYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
||| +.+|+|.+++... ..+++..+..++.||+.||+|||+.+ |+||||||+|||++ ++.+||+|||+++.....
T Consensus 87 v~e-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH~~~---iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~ 160 (343)
T 3dbq_A 87 VME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 160 (343)
T ss_dssp EEC-CCSEEHHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEE-TTEEEECCCSSSCCC---
T ss_pred EEe-CCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEEE-CCcEEEeecccccccCcc
Confidence 999 5688999999764 47999999999999999999999997 99999999999997 578999999999876543
Q ss_pred Ccc-eeeccccCccCCchHhhhc-----------CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc
Q 004400 570 NTH-ISTRVAGTIGYMAPEYAMR-----------GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK 637 (756)
Q Consensus 570 ~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 637 (756)
... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||....... ..........
T Consensus 161 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~--~~~~~~~~~~- 237 (343)
T 3dbq_A 161 TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI--SKLHAIIDPN- 237 (343)
T ss_dssp ---------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH--HHHHHHHCTT-
T ss_pred cccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHH--HHHHHHhcCC-
Confidence 322 2345679999999999975 678999999999999999999999996432211 1111111111
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 638 LMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
....++......+.+++.+||+.||.+|||+.|+++.
T Consensus 238 --------~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 238 --------HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp --------SCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred --------cccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 1111111112348899999999999999999999865
No 114
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=7e-41 Score=385.72 Aligned_cols=254 Identities=26% Similarity=0.400 Sum_probs=203.8
Q ss_pred CccccC-cccCCCCccEEEeecc---CCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 417 NFATDN-NIGEGGFGPVYKGLLA---DGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 417 ~~~~~~-~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
++...+ .||+|+||.||+|.+. ++..||||+++... ....+.|.+|++++++++|||||+++++|.+ +..++||
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~ 414 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVM 414 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEE
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEE
Confidence 334444 7999999999999853 46679999997643 3356789999999999999999999999976 5689999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
|||++|+|.+++......+++..+..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.......
T Consensus 415 E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~ 491 (613)
T 2ozo_A 415 EMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDS 491 (613)
T ss_dssp ECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCSTTTTCC----
T ss_pred EeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---EEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCc
Confidence 999999999999877778999999999999999999999996 99999999999999999999999999987654332
Q ss_pred ce--eeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCC
Q 004400 572 HI--STRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGS 648 (756)
Q Consensus 572 ~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (756)
.. .....+|+.|+|||++.+..++.++|||||||++|||++ |+.||...+........ ..+...... .
T Consensus 492 ~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i----~~~~~~~~p-----~ 562 (613)
T 2ozo_A 492 YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFI----EQGKRMECP-----P 562 (613)
T ss_dssp ----------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHH----HTTCCCCCC-----T
T ss_pred eeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH----HcCCCCCCC-----C
Confidence 22 122346789999999999999999999999999999998 99999766554433221 122211111 1
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 649 NFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 649 ~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
.++ ..+.+++.+||+.+|++||++.+|++.|+.+.
T Consensus 563 ~~~----~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~ 597 (613)
T 2ozo_A 563 ECP----PELYALMSDCWIYKWEDRPDFLTVEQRMRACY 597 (613)
T ss_dssp TCC----HHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 223 34889999999999999999999999998653
No 115
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.7e-40 Score=349.67 Aligned_cols=259 Identities=21% Similarity=0.252 Sum_probs=201.1
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCc---ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSK---QGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|+. .+++.||+|++..... ...+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 46899999999999999999995 4789999999975432 2246788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++++|.+++... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||++.......
T Consensus 113 ~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 188 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQ-GPLAPPRAVAIVRQIGSALDAAHAAG---ATHRDVKPENILVSADDFAYLVDFGIASATTDEK 188 (309)
T ss_dssp EECCCCEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSCCC--------
T ss_pred EEecCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCc---CCcCCCChHHEEEcCCCCEEEecCccCccccccc
Confidence 9999999999999754 47999999999999999999999997 9999999999999999999999999998665544
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
........||+.|+|||.+.+..++.++||||||+++|||++|+.||.......... ........... ....+
T Consensus 189 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~---~~~~~~~~~~~----~~~~~ 261 (309)
T 2h34_A 189 LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGA---HINQAIPRPST----VRPGI 261 (309)
T ss_dssp --------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHH---HHHSCCCCGGG----TSTTC
T ss_pred cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHH---HhccCCCCccc----cCCCC
Confidence 333445679999999999998899999999999999999999999997654432111 11111111110 11122
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCC-CHHHHHHHhccCcc
Q 004400 651 DKEQVMVMINVALLCANASPTIRP-SMSSVLRMLECGVD 688 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RP-t~~ev~~~L~~~~~ 688 (756)
+ ..+.+++.+||+.||++|| ++.++++.|++...
T Consensus 262 ~----~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~ 296 (309)
T 2h34_A 262 P----VAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALA 296 (309)
T ss_dssp C----THHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred C----HHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence 2 2488999999999999999 99999999997654
No 116
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=4.2e-40 Score=344.04 Aligned_cols=249 Identities=26% Similarity=0.357 Sum_probs=199.0
Q ss_pred cCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 416 NNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
++|...+.||+|+||.||+|.. .++..||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 101 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET 101 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence 5788899999999999999994 578999999987643 33457899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe---cCCCCEEEccCCccccCc
Q 004400 494 LENNSLARALFE---HRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL---DKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 494 ~~~gsL~~~l~~---~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill---~~~~~~kl~DFGla~~~~ 567 (756)
+++|+|.+++.. ....+++..+..++.|++.||+|||+.+ |+||||||+||++ +.++.+||+|||+++...
T Consensus 102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~ 178 (285)
T 3is5_A 102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQH---VVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK 178 (285)
T ss_dssp CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence 999999999863 2467999999999999999999999997 9999999999999 456789999999998654
Q ss_pred ccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 568 EENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
.... .....||+.|+|||++. +.++.++||||||+++|||++|+.||............. . ....... ..
T Consensus 179 ~~~~--~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~---~-~~~~~~~---~~ 248 (285)
T 3is5_A 179 SDEH--STNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKAT---Y-KEPNYAV---EC 248 (285)
T ss_dssp ----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH---H-CCCCCCC-----
T ss_pred Cccc--CcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhc---c-CCccccc---cc
Confidence 4322 23457999999999875 578999999999999999999999997665433322111 1 1110000 01
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
...+ ..+.+++.+|++.||++|||+.|+++
T Consensus 249 ~~~~----~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 249 RPLT----PQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp CCCC----HHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred CcCC----HHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1122 34789999999999999999999986
No 117
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=3.9e-40 Score=342.38 Aligned_cols=246 Identities=25% Similarity=0.400 Sum_probs=182.5
Q ss_pred cCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
++|+..+.||+|+||.||+|+ ..+++.||+|++... .....+.+.+|+++++.++||||+++++++.+++..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 579999999999999999998 467899999998754 2233567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
||+ +++|.+++... ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++.......
T Consensus 93 e~~-~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 167 (275)
T 2eue_A 93 EYA-GNELFDYIVQR-DKMSEQEARRFFQQIISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNF 167 (275)
T ss_dssp ECC-CEEHHHHHHTS-SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTSCEEECCSSCC--------
T ss_pred hhc-CCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---CeeccCChHhEEECCCCCEEEeecccceeccCccc
Confidence 999 67888888654 47999999999999999999999997 99999999999999999999999999986544322
Q ss_pred ceeeccccCccCCchHhhhcCCC-CcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHL-TEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
.....||+.|+|||.+.+..+ +.++||||||+++|||++|+.||............ .. ... . ....+
T Consensus 168 --~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~---~~-~~~-~-----~~~~~ 235 (275)
T 2eue_A 168 --LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNI---SN-GVY-T-----LPKFL 235 (275)
T ss_dssp ---------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH-TCC-C-----CCTTS
T ss_pred --ccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---Hh-CCC-C-----CCccC
Confidence 234569999999999987665 78999999999999999999999766543322211 11 110 0 11122
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
+ ..+.+++.+|++.||++|||+.|+++.
T Consensus 236 ~----~~~~~li~~~l~~dP~~Rps~~e~l~h 263 (275)
T 2eue_A 236 S----PGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp C----HHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred C----HHHHHHHHHHhhcCHhHCCCHHHHhhC
Confidence 3 348899999999999999999999753
No 118
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=1.1e-40 Score=356.17 Aligned_cols=250 Identities=21% Similarity=0.355 Sum_probs=197.3
Q ss_pred hcCccccCcccCCCCccEEEeecc-CCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC-------
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGN------- 485 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------- 485 (756)
.++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||+++++|.+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 457889999999999999999954 89999999986543 334577999999999999999999999987653
Q ss_pred --------------------------------------------------eEEEEEEecCCCCHHHHHHhcC--CCCCHH
Q 004400 486 --------------------------------------------------QLLLIYEYLENNSLARALFEHR--LKLDWP 513 (756)
Q Consensus 486 --------------------------------------------------~~~lV~e~~~~gsL~~~l~~~~--~~l~~~ 513 (756)
..++||||+++|+|.+++.... ...++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~ 164 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG 164 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence 3899999999999999997543 235677
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc-----------ceeeccccCcc
Q 004400 514 TRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT-----------HISTRVAGTIG 582 (756)
Q Consensus 514 ~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~-----------~~~~~~~gt~~ 582 (756)
.+..++.||+.||+|||++| |+||||||+||+++.++.+||+|||+++....... .......||+.
T Consensus 165 ~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 241 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL 241 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred HHHHHHHHHHHHHHHHHhCC---eeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence 79999999999999999997 99999999999999999999999999987654321 12234579999
Q ss_pred CCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHH
Q 004400 583 YMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVA 662 (756)
Q Consensus 583 y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 662 (756)
|+|||++.+..++.++|||||||++|||++|..|+.... .. .. ......... ........+.+++
T Consensus 242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~--~~---~~-~~~~~~~~~---------~~~~~~~~~~~li 306 (332)
T 3qd2_B 242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERV--RI---IT-DVRNLKFPL---------LFTQKYPQEHMMV 306 (332)
T ss_dssp GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHH--HH---HH-HHHTTCCCH---------HHHHHCHHHHHHH
T ss_pred ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHH--HH---HH-HhhccCCCc---------ccccCChhHHHHH
Confidence 999999999999999999999999999999876642111 00 00 001111110 1122334578999
Q ss_pred HHhhcCCCCCCCCHHHHHHH
Q 004400 663 LLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 663 ~~c~~~~P~~RPt~~ev~~~ 682 (756)
.+||+.||++|||+.|+++.
T Consensus 307 ~~~l~~~p~~Rps~~~~l~~ 326 (332)
T 3qd2_B 307 QDMLSPSPTERPEATDIIEN 326 (332)
T ss_dssp HHHHCSSGGGSCCHHHHHHS
T ss_pred HHHccCCCCcCCCHHHHhhc
Confidence 99999999999999999874
No 119
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=8e-41 Score=361.79 Aligned_cols=247 Identities=26% Similarity=0.348 Sum_probs=194.9
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC---cccHHHHHHHHHH-HHhCCCCceeeEeeEEEeCCeEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS---KQGNREFINEIGM-ISALQHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~l 489 (756)
.++|+..+.||+|+||.||+|+. .+++.||||++.+.. ......+.+|..+ ++.++||||++++++|.+++..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 35788999999999999999995 468899999997642 2233456677776 577899999999999999999999
Q ss_pred EEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 490 IYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
||||+++|+|.+++... ..+++..+..++.||+.||+|||++| |+||||||+|||++.++.+||+|||+++.....
T Consensus 117 v~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~ 192 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRE-RCFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKENIEH 192 (373)
T ss_dssp EEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCBCGGGBCC
T ss_pred EEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEeeCccccccccC
Confidence 99999999999999754 37899999999999999999999997 999999999999999999999999999853322
Q ss_pred CcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 570 NTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
. ......+||+.|+|||++.+..++.++|||||||++|||++|+.||...+........ ... .. . ....
T Consensus 193 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i--~~~--~~-~-----~~~~ 261 (373)
T 2r5t_A 193 N-STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNI--LNK--PL-Q-----LKPN 261 (373)
T ss_dssp C-CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHH--HHS--CC-C-----CCSS
T ss_pred C-CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHH--Hhc--cc-C-----CCCC
Confidence 2 2234568999999999999999999999999999999999999999776654433211 111 10 0 1112
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHH
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVL 680 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~ 680 (756)
++ ..+.+++.+|++.||++||++.+.+
T Consensus 262 ~~----~~~~~li~~lL~~dp~~R~~~~~~~ 288 (373)
T 2r5t_A 262 IT----NSARHLLEGLLQKDRTKRLGAKDDF 288 (373)
T ss_dssp SC----HHHHHHHHHHTCSSGGGSTTTTTTH
T ss_pred CC----HHHHHHHHHHcccCHHhCCCCCCCH
Confidence 23 3488999999999999999985433
No 120
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.2e-40 Score=359.79 Aligned_cols=259 Identities=22% Similarity=0.387 Sum_probs=194.8
Q ss_pred hhcCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCC-CCceeeEeeEEEeCC--eE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK--SKQGNREFINEIGMISALQ-HPNLVKLYGCCIEGN--QL 487 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~--~~ 487 (756)
..++|...+.||+|+||.||+|. ..+|+.||||++... .....+.+.+|+.+++.+. ||||+++++++..++ ..
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 45689999999999999999998 567999999998653 2334567889999999997 999999999998654 78
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
|+|||||+ |+|.+++... .+++..+..++.|++.||+|||+.| |+||||||+|||++.++.+||+|||+|+...
T Consensus 87 ~lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 160 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRAN--ILEPVHKQYVVYQLIKVIKYLHSGG---LLHRDMKPSNILLNAECHVKVADFGLSRSFV 160 (388)
T ss_dssp EEEEECCS-EEHHHHHHHT--CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEESS
T ss_pred EEEecccC-cCHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHeEEcCCCCEEecCCccccccc
Confidence 99999998 5899988753 6899999999999999999999997 9999999999999999999999999998653
Q ss_pred cc--------------------CcceeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHH
Q 004400 568 EE--------------------NTHISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLL 626 (756)
Q Consensus 568 ~~--------------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 626 (756)
.. .....+..+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.+.....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~ 240 (388)
T 3oz6_A 161 NIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQL 240 (388)
T ss_dssp SCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred ccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 21 1112334679999999999986 67999999999999999999999999776654433
Q ss_pred HHHHHHHhcCcccccc---------------------cc----------------CCCCCCCHHHHHHHHHHHHHhhcCC
Q 004400 627 DWALVLKEQGKLMELV---------------------DT----------------NPGSNFDKEQVMVMINVALLCANAS 669 (756)
Q Consensus 627 ~~~~~~~~~~~~~~~~---------------------~~----------------~~~~~~~~~~~~~l~~l~~~c~~~~ 669 (756)
..............+. .. .+.... ...+.+++.+||+.|
T Consensus 241 ~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~dll~~~L~~d 316 (388)
T 3oz6_A 241 ERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADC----NEEALDLLDKLLQFN 316 (388)
T ss_dssp HHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCC----CHHHHHHHHHHCCSS
T ss_pred HHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccC----CHHHHHHHHHhhccC
Confidence 2221111100000000 00 000112 234889999999999
Q ss_pred CCCCCCHHHHHHH
Q 004400 670 PTIRPSMSSVLRM 682 (756)
Q Consensus 670 P~~RPt~~ev~~~ 682 (756)
|++|||+.|+++.
T Consensus 317 P~~R~t~~e~l~H 329 (388)
T 3oz6_A 317 PNKRISANDALKH 329 (388)
T ss_dssp GGGSCCHHHHTTS
T ss_pred cccCCCHHHHhCC
Confidence 9999999999875
No 121
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=5.9e-41 Score=347.42 Aligned_cols=253 Identities=21% Similarity=0.317 Sum_probs=205.2
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeC--CeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEG--NQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lV 490 (756)
.++|...+.||+|+||.||+|+.. ++.||||++.... ....+.+.+|+.++++++||||+++++++.++ +..++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 357888999999999999999975 8899999987642 33446799999999999999999999999887 788999
Q ss_pred EEecCCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 491 YEYLENNSLARALFEHRL-KLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~-~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
|||+++|+|.+++..... .+++..+..++.|++.||+|||+.+ ++|+||||||+||+++.++.++|+|||++.....
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~- 165 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLE-PLIPRHALNSRSVMIDEDMTARISMADVKFSFQS- 165 (271)
T ss_dssp EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSS-SCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSC-
T ss_pred ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCC-CceecCCCccceEEEcCCcceeEEeccceeeecc-
Confidence 999999999999985543 5899999999999999999999873 3499999999999999999999999988764322
Q ss_pred CcceeeccccCccCCchHhhhcCCCCc---ccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCC
Q 004400 570 NTHISTRVAGTIGYMAPEYAMRGHLTE---KADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNP 646 (756)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (756)
....||+.|+|||.+.+..++. ++||||||+++|||++|+.||.......... .......... .
T Consensus 166 -----~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~---~~~~~~~~~~-----~ 232 (271)
T 3kmu_A 166 -----PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGM---KVALEGLRPT-----I 232 (271)
T ss_dssp -----TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHH---HHHHSCCCCC-----C
T ss_pred -----cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHH---HHHhcCCCCC-----C
Confidence 2346899999999998755444 8999999999999999999997655433221 1111111111 1
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 647 GSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 647 ~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
...++ ..+.+++.+||+.||++|||+.|+++.|+.+.
T Consensus 233 ~~~~~----~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~ 269 (271)
T 3kmu_A 233 PPGIS----PHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ 269 (271)
T ss_dssp CTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred CCCCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 12223 34889999999999999999999999998653
No 122
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=8.9e-41 Score=371.83 Aligned_cols=249 Identities=26% Similarity=0.322 Sum_probs=197.8
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|+..+.||+|+||.||+|. ..+|+.||||++... .......+.+|+.+++.++||||++++++|.+.+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 4679999999999999999999 567899999998753 233345678899999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHG-ESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~-~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
|||+++|+|.+++... ..+++..+..++.||+.||+|||+ .| |+||||||+|||++.++.+||+|||+++.....
T Consensus 227 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~g---iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 302 (446)
T 4ejn_A 227 MEYANGGELFFHLSRE-RVFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD 302 (446)
T ss_dssp ECCCSSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHHTC---CCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-
T ss_pred EeeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHhhcCC---EEECCCCHHHEEECCCCCEEEccCCCceeccCC
Confidence 9999999999999754 479999999999999999999998 76 999999999999999999999999999854332
Q ss_pred CcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 570 NTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
.. .....+||+.|+|||++.+..++.++|||||||++|||++|+.||...+......... ..... ....
T Consensus 303 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~--~~~~~--------~p~~ 371 (446)
T 4ejn_A 303 GA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELIL--MEEIR--------FPRT 371 (446)
T ss_dssp -----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH--HCCCC--------CCTT
T ss_pred Cc-ccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHH--hCCCC--------CCcc
Confidence 22 2344689999999999999999999999999999999999999997765544332211 11110 1112
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCC-----CHHHHHHH
Q 004400 650 FDKEQVMVMINVALLCANASPTIRP-----SMSSVLRM 682 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RP-----t~~ev~~~ 682 (756)
.+ ..+.+++.+||+.||.+|| ++.|+++.
T Consensus 372 ~~----~~~~~li~~~L~~dP~~R~~~~~~t~~ell~h 405 (446)
T 4ejn_A 372 LG----PEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH 405 (446)
T ss_dssp SC----HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred CC----HHHHHHHHHHcccCHHHhCCCCCCCHHHHHhC
Confidence 23 3488999999999999999 99998763
No 123
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=4.1e-40 Score=367.14 Aligned_cols=261 Identities=22% Similarity=0.277 Sum_probs=209.7
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCC-CceeeEeeEEEeCCeEEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQH-PNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~lV~e 492 (756)
.++|...+.||+|+||.||+|+ ..+++.||||++..... ...+.+|+++++.++| +++..+..++.+.+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 4689999999999999999999 46799999998765433 2458899999999987 566667777788899999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe---cCCCCEEEccCCccccCccc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL---DKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill---~~~~~~kl~DFGla~~~~~~ 569 (756)
|+ +++|.+++......+++..++.++.||+.||+|||+++ ||||||||+|||+ +.++.+||+|||+++.....
T Consensus 84 ~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~ 159 (483)
T 3sv0_A 84 LL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKS---FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDT 159 (483)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred CC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCcceEEEecCCCCCeEEEEeCCcceeccCC
Confidence 99 99999999876778999999999999999999999997 9999999999999 68899999999999876543
Q ss_pred Ccc------eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhh---HHHHHHHHHhcCcccc
Q 004400 570 NTH------ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFY---LLDWALVLKEQGKLME 640 (756)
Q Consensus 570 ~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~---~~~~~~~~~~~~~~~~ 640 (756)
... ......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ................
T Consensus 160 ~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~ 239 (483)
T 3sv0_A 160 STHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEA 239 (483)
T ss_dssp TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHH
T ss_pred ccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHH
Confidence 322 1235679999999999999999999999999999999999999996543221 1111111111111111
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcccc
Q 004400 641 LVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDVL 690 (756)
Q Consensus 641 ~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~~ 690 (756)
+.. .++ ..+.+++.+||+.+|++||++.+|+++|+.+....
T Consensus 240 l~~-----~~p----~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~ 280 (483)
T 3sv0_A 240 LCR-----GYP----TEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIRE 280 (483)
T ss_dssp HHT-----TSC----HHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred Hhc-----CCc----HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHc
Confidence 111 122 34889999999999999999999999999775543
No 124
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=3.5e-40 Score=346.48 Aligned_cols=261 Identities=21% Similarity=0.273 Sum_probs=207.6
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEE-EeCCeEEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCC-IEGNQLLLIYE 492 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lV~e 492 (756)
.++|...+.||+|+||.||+|+ ..+++.||||++..... ...+.+|+.+++.++|+++++.+.++ .+++..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 4689999999999999999999 46899999999865433 34688999999999988876666655 66788899999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe---cCCCCEEEccCCccccCccc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL---DKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill---~~~~~~kl~DFGla~~~~~~ 569 (756)
|+ +++|.+++......+++..+..++.|++.||+|||+++ |+||||||+||++ +.++.+||+|||+++.....
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~ 161 (296)
T 3uzp_A 86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 161 (296)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred ec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccc
Confidence 99 99999999866678999999999999999999999997 9999999999999 48889999999999866543
Q ss_pred Ccc------eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchh---hHHHHHHHHHhcCcccc
Q 004400 570 NTH------ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMF---YLLDWALVLKEQGKLME 640 (756)
Q Consensus 570 ~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~---~~~~~~~~~~~~~~~~~ 640 (756)
... ......||+.|+|||.+.+..++.++|||||||++|||++|+.||...... .................
T Consensus 162 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (296)
T 3uzp_A 162 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEV 241 (296)
T ss_dssp TTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHH
T ss_pred ccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHH
Confidence 321 124467999999999999999999999999999999999999999653221 11111110000011000
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcccc
Q 004400 641 LVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDVL 690 (756)
Q Consensus 641 ~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~~ 690 (756)
. ...++ ..+.+++.+||+.||++||++.+|++.|+.+....
T Consensus 242 ~-----~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~ 282 (296)
T 3uzp_A 242 L-----CKGYP----SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ 282 (296)
T ss_dssp H-----TTTSC----HHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHT
T ss_pred H-----HhhCC----HHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhc
Confidence 0 11223 34889999999999999999999999999765433
No 125
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=2.3e-40 Score=362.04 Aligned_cols=262 Identities=20% Similarity=0.306 Sum_probs=204.5
Q ss_pred hhcCccccCcccCC--CCccEEEeec-cCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEE
Q 004400 414 ATNNFATDNNIGEG--GFGPVYKGLL-ADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 414 ~~~~~~~~~~lg~G--~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 488 (756)
..++|+..+.||+| +||.||+|+. .+++.||||++.... ....+.+.+|+.+++.++|||||++++++.+++..+
T Consensus 23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 102 (389)
T 3gni_B 23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW 102 (389)
T ss_dssp CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence 35688999999999 9999999995 479999999997542 333467888999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 489 LIYEYLENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
+|||||++|+|.+++... ...+++..+..++.||+.||+|||+.+ |+||||||+|||++.++.+||+|||.+....
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 103 VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 999999999999999754 356999999999999999999999997 9999999999999999999999999986543
Q ss_pred ccCc------ceeeccccCccCCchHhhhc--CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccc
Q 004400 568 EENT------HISTRVAGTIGYMAPEYAMR--GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLM 639 (756)
Q Consensus 568 ~~~~------~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 639 (756)
.... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...+......... .+...
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~----~~~~~ 255 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKL----NGTVP 255 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC----------
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHh----cCCCC
Confidence 2211 11223478999999999987 579999999999999999999999996544332211000 00000
Q ss_pred cccc------------------------------------cCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 640 ELVD------------------------------------TNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 640 ~~~~------------------------------------~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
...+ ......+.......+.+++.+||+.||++|||+.|+++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h 334 (389)
T 3gni_B 256 CLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH 334 (389)
T ss_dssp --------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred ccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence 0000 000001122233458899999999999999999999854
No 126
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.4e-41 Score=363.80 Aligned_cols=257 Identities=26% Similarity=0.426 Sum_probs=197.3
Q ss_pred cCccccCcccCCCCccEEEeecc--CC--cEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEe-CCeEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLLA--DG--TAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIE-GNQLLL 489 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~~--~~--~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~l 489 (756)
..|...+.||+|+||.||+|+.. ++ ..||||.+.... ....+.|.+|+.++++++||||++++++|.+ ++..++
T Consensus 89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 35677889999999999999853 22 368999986542 3345779999999999999999999999764 567899
Q ss_pred EEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 490 IYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
||||+++|+|.+++......+++..+..++.||++||+|||+.+ |+||||||+||+++.++.+||+|||+++.....
T Consensus 169 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 245 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 245 (373)
T ss_dssp EEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred EEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCC---EecCccchheEEECCCCCEEEeecccccccccc
Confidence 99999999999999877778999999999999999999999997 999999999999999999999999999865433
Q ss_pred Ccc---eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccC
Q 004400 570 NTH---ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTN 645 (756)
Q Consensus 570 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (756)
... ......+|+.|+|||.+.+..++.++|||||||++|||++ |..||...+....... ... +....
T Consensus 246 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~---~~~-~~~~~----- 316 (373)
T 3c1x_A 246 EFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVY---LLQ-GRRLL----- 316 (373)
T ss_dssp ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHH---HHT-TCCCC-----
T ss_pred ccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHH---HHc-CCCCC-----
Confidence 211 1233567889999999999999999999999999999999 6667755443332221 111 11111
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 646 PGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 646 ~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
....++ ..+.+++.+||+.||++||++.|+++.|+++..
T Consensus 317 ~p~~~~----~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~ 355 (373)
T 3c1x_A 317 QPEYCP----DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS 355 (373)
T ss_dssp CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 111223 348899999999999999999999999997654
No 127
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=3.7e-41 Score=356.67 Aligned_cols=253 Identities=21% Similarity=0.332 Sum_probs=195.8
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCc---ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC----e
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSK---QGNREFINEIGMISALQHPNLVKLYGCCIEGN----Q 486 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~ 486 (756)
.++|...+.||+|+||.||+|+ ..+++.||||++..... .....+.+|+.++++++||||+++++++.... .
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 4678999999999999999999 46789999999976432 23457889999999999999999999987654 3
Q ss_pred EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 487 LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
.++||||+++|+|.+++... ..+++..+..++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++..
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~ 166 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAI 166 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred cEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence 49999999999999999754 37999999999999999999999997 999999999999999999999999999865
Q ss_pred cccCcc--eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccccccc
Q 004400 567 EEENTH--ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDT 644 (756)
Q Consensus 567 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (756)
...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.......... ...........
T Consensus 167 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~---~~~~~~~~~~~--- 240 (311)
T 3ork_A 167 ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAY---QHVREDPIPPS--- 240 (311)
T ss_dssp ---------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH---HHHHCCCCCHH---
T ss_pred cccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHH---HHhcCCCCCcc---
Confidence 543222 2334579999999999999999999999999999999999999997665433221 11111111100
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 645 NPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 645 ~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
.....++ ..+.+++.+||+.||++||++.++++
T Consensus 241 ~~~~~~~----~~l~~li~~~l~~dP~~R~~~~~~l~ 273 (311)
T 3ork_A 241 ARHEGLS----ADLDAVVLKALAKNPENRYQTAAEMR 273 (311)
T ss_dssp HHSTTCC----HHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred cccCCCC----HHHHHHHHHHHhcCHhhChhhHHHHH
Confidence 0011122 34889999999999999997776653
No 128
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=2.7e-40 Score=344.28 Aligned_cols=248 Identities=26% Similarity=0.389 Sum_probs=203.5
Q ss_pred hhcCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 489 (756)
+.++|...+.||+|+||.||+|. ..++..||+|++... .......+.+|+.++++++||||+++++++.+.+..++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 45789999999999999999998 456789999998653 22234678899999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 490 IYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
||||+++|+|.+++... ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||++......
T Consensus 87 v~e~~~~~~l~~~l~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~ 162 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQKL-SKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 162 (279)
T ss_dssp EECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTTT---CEECCCCGGGEEECTTSCEEECSCCEESCC---
T ss_pred EEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHhEEEcCCCCEEEEeccccccCCcc
Confidence 99999999999999754 46899999999999999999999986 999999999999999999999999998654332
Q ss_pred CcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 570 NTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
. .....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...+........ .. .. ......
T Consensus 163 ~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~---~~-~~------~~~~~~ 229 (279)
T 3fdn_A 163 R---RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRI---SR-VE------FTFPDF 229 (279)
T ss_dssp --------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH---HH-TC------CCCCTT
T ss_pred c---ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHH---Hh-CC------CCCCCc
Confidence 2 23457899999999999989999999999999999999999999766543332211 11 00 001111
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.+ ..+.+++.+||+.||++||++.|+++.
T Consensus 230 ~~----~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 230 VT----EGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp SC----HHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred CC----HHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 22 348899999999999999999999874
No 129
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=359.69 Aligned_cols=261 Identities=15% Similarity=0.164 Sum_probs=206.8
Q ss_pred hcCccccCcccCCCCccEEEeecc---------CCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceee---------
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLA---------DGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVK--------- 476 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~---------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------- 476 (756)
.++|...+.||+|+||.||+|+.. +++.||+|.+... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 368899999999999999999965 3789999998643 46889999999999999987
Q ss_pred ------EeeEEEe-CCeEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceE
Q 004400 477 ------LYGCCIE-GNQLLLIYEYLENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVL 548 (756)
Q Consensus 477 ------l~~~~~~-~~~~~lV~e~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nil 548 (756)
+++++.. ++..++||||+ +++|.+++... ...+++..+..++.||+.||+|||+++ |+||||||+||+
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIl 191 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENE---YVHGNVTAENIF 191 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCGGGEE
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEE
Confidence 6778876 78899999999 99999999864 357999999999999999999999997 999999999999
Q ss_pred ecCCC--CEEEccCCccccCcccCcc------eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCcc
Q 004400 549 LDKDL--NSKISDFGLAKLDEEENTH------ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKE 620 (756)
Q Consensus 549 l~~~~--~~kl~DFGla~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~ 620 (756)
++.++ .+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 271 (352)
T 2jii_A 192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNC 271 (352)
T ss_dssp EETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred EcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence 99998 8999999999866543221 123457999999999999989999999999999999999999999654
Q ss_pred c--hhhHHHHHHHHHhcCccccccccCCC-CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcccc
Q 004400 621 D--MFYLLDWALVLKEQGKLMELVDTNPG-SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDVL 690 (756)
Q Consensus 621 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~~ 690 (756)
. ............. ........... ..++ ..+.+++.+||+.||++||++.+|++.|+++....
T Consensus 272 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~ 338 (352)
T 2jii_A 272 LPNTEDIMKQKQKFVD--KPGPFVGPCGHWIRPS----ETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDL 338 (352)
T ss_dssp TTCHHHHHHHHHHHHH--SCCCEECTTSCEECCC----HHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHhccC--ChhhhhhhccccCCCc----HHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhc
Confidence 3 2222222111111 11112211111 1223 34889999999999999999999999999765543
No 130
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=349.77 Aligned_cols=254 Identities=30% Similarity=0.495 Sum_probs=198.1
Q ss_pred cCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEecC
Q 004400 416 NNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLE 495 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~ 495 (756)
++|+..+.||+|+||.||+|... ++.||||.+... ...+.|.+|++++++++||||+++++++.+ ..++||||++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~~ 82 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYAE 82 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECCT
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcCC
Confidence 57888899999999999999875 788999998643 345789999999999999999999998863 4789999999
Q ss_pred CCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC-EEEccCCccccCcccCcc
Q 004400 496 NNSLARALFEHRL--KLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN-SKISDFGLAKLDEEENTH 572 (756)
Q Consensus 496 ~gsL~~~l~~~~~--~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~-~kl~DFGla~~~~~~~~~ 572 (756)
+|+|.+++..... .+++..+..++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||+++.....
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~--- 159 (307)
T 2eva_A 83 GGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH--- 159 (307)
T ss_dssp TCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC----------
T ss_pred CCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc---
Confidence 9999999975432 4789999999999999999999943234999999999999998887 799999999754432
Q ss_pred eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhh-HHHHHHHHHhcCccccccccCCCCCCC
Q 004400 573 ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFY-LLDWALVLKEQGKLMELVDTNPGSNFD 651 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (756)
.....||+.|+|||++.+..++.++||||||+++|||++|+.||....... ...|. . ........ ....+
T Consensus 160 -~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~--~-~~~~~~~~-----~~~~~ 230 (307)
T 2eva_A 160 -MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWA--V-HNGTRPPL-----IKNLP 230 (307)
T ss_dssp ------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHH--H-HTTCCCCC-----BTTCC
T ss_pred -cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHH--H-hcCCCCCc-----ccccC
Confidence 223468999999999999899999999999999999999999996432211 11111 1 11111111 11223
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcccc
Q 004400 652 KEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDVL 690 (756)
Q Consensus 652 ~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~~ 690 (756)
..+.+++.+||+.||++|||+.++++.|+.+....
T Consensus 231 ----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 265 (307)
T 2eva_A 231 ----KPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF 265 (307)
T ss_dssp ----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence 34889999999999999999999999999765543
No 131
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.2e-40 Score=344.77 Aligned_cols=249 Identities=27% Similarity=0.431 Sum_probs=185.3
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC---cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS---KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|+. .+|+.||||.+.... ....+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 45789999999999999999994 679999999986532 22346789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++++|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~ 166 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH 166 (278)
T ss_dssp EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSSCCGGGEEECTTCCEEECCCTTCEECC---
T ss_pred EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEEeecceeeccCCC
Confidence 9999999999999877678999999999999999999999996 9999999999999999999999999998654322
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
.. .....||+.|+|||.+.+..++.++||||||+++|||++|+.||.......... .... .+......+
T Consensus 167 ~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~-------~~~~---~~~~~~~~~ 235 (278)
T 3cok_A 167 EK-HYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLN-------KVVL---ADYEMPSFL 235 (278)
T ss_dssp --------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC------------CCS---SCCCCCTTS
T ss_pred Cc-ceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHH-------HHhh---cccCCcccc
Confidence 21 233578999999999998889999999999999999999999996554322111 0000 011111122
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
+ ..+.+++.+||+.||++||++.++++
T Consensus 236 ~----~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 236 S----IEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp C----HHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred C----HHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 2 34889999999999999999999876
No 132
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=364.97 Aligned_cols=269 Identities=19% Similarity=0.232 Sum_probs=212.4
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC--eEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGN--QLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lV 490 (756)
.++|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+ ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 45788999999999999999995 468999999997543 334567889999999999999999999998765 78999
Q ss_pred EEecCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe----cCCCCEEEccCCccc
Q 004400 491 YEYLENNSLARALFEHR--LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL----DKDLNSKISDFGLAK 564 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~--~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill----~~~~~~kl~DFGla~ 564 (756)
|||+++|+|.+++.... ..+++..+..++.||+.||+|||+.+ |+||||||+|||+ +.++.+||+|||+++
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~ 164 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence 99999999999997432 23999999999999999999999997 9999999999999 777889999999998
Q ss_pred cCcccCcceeeccccCccCCchHhhhc--------CCCCcccchhhHHHHHHHHHhCCCCCCccch-hhHHHHHHHHHhc
Q 004400 565 LDEEENTHISTRVAGTIGYMAPEYAMR--------GHLTEKADVYSFGIVALEIVSGRSNVTKEDM-FYLLDWALVLKEQ 635 (756)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~slGv~l~elltg~~p~~~~~~-~~~~~~~~~~~~~ 635 (756)
....... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||..... .............
T Consensus 165 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~ 242 (396)
T 4eut_A 165 ELEDDEQ--FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITG 242 (396)
T ss_dssp ECCCGGG--SSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHS
T ss_pred EccCCCc--cccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcC
Confidence 6554332 234579999999999875 5678899999999999999999999953321 1111111111111
Q ss_pred Ccc--cc-----------cc-ccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 636 GKL--ME-----------LV-DTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 636 ~~~--~~-----------~~-~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
... .. .. +.......+......+.+++.+||+.||++||++.|+++.++.+.+
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~ 309 (396)
T 4eut_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH 309 (396)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred CCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence 110 00 00 1111223457777889999999999999999999999999887644
No 133
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=350.29 Aligned_cols=262 Identities=22% Similarity=0.298 Sum_probs=200.9
Q ss_pred cCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCc--ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSK--QGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
++|...+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 5788999999999999999995 4689999999865432 224668899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTH 572 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~ 572 (756)
|+++++|.+++... ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++........
T Consensus 83 ~~~~~~l~~~~~~~-~~~~~~~~~~i~~~l~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 158 (311)
T 4agu_A 83 YCDHTVLHELDRYQ-RGVPEHLVKSITWQTLQAVNFCHKHN---CIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDY 158 (311)
T ss_dssp CCSEEHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred eCCCchHHHHHhhh-cCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccc
Confidence 99999999887544 47999999999999999999999997 999999999999999999999999999865533222
Q ss_pred eeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHh-----------cCcc-c
Q 004400 573 ISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKE-----------QGKL-M 639 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~-----------~~~~-~ 639 (756)
.....||+.|+|||++.+ ..++.++||||+|+++|||++|+.||................. .... .
T Consensus 159 -~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (311)
T 4agu_A 159 -YDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFS 237 (311)
T ss_dssp --------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGT
T ss_pred -cCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccc
Confidence 234578999999999976 6789999999999999999999999976654433322211111 0000 0
Q ss_pred cccccCCCCCCC-----HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 640 ELVDTNPGSNFD-----KEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 640 ~~~~~~~~~~~~-----~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
....+.+....+ +.....+.+++.+||+.||++|||+.|+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 285 (311)
T 4agu_A 238 GVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH 285 (311)
T ss_dssp TCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred cCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence 000000000000 1122348899999999999999999999864
No 134
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=1.2e-40 Score=363.74 Aligned_cols=251 Identities=22% Similarity=0.327 Sum_probs=197.4
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccC--cccHHHHHHHHHHHHhCC--CCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKS--KQGNREFINEIGMISALQ--HPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++ |||||++++++..++..++|
T Consensus 55 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 134 (390)
T 2zmd_A 55 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 134 (390)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence 35689999999999999999998789999999986542 334567899999999996 59999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|| +.+++|.+++.... .+++..+..++.||+.||+|||+.+ |+||||||+|||++ ++.+||+|||+++......
T Consensus 135 ~E-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~ 208 (390)
T 2zmd_A 135 ME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 208 (390)
T ss_dssp EE-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCCGGGEEES-SSCEEECCCSSSCCC----
T ss_pred Ee-cCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEEE-CCeEEEEecCccccccCCC
Confidence 99 67889999997654 7899999999999999999999986 99999999999996 5789999999998765433
Q ss_pred cc-eeeccccCccCCchHhhhc-----------CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcc
Q 004400 571 TH-ISTRVAGTIGYMAPEYAMR-----------GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKL 638 (756)
Q Consensus 571 ~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 638 (756)
.. ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||....... ............
T Consensus 209 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~--~~~~~~~~~~~~ 286 (390)
T 2zmd_A 209 TSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI--SKLHAIIDPNHE 286 (390)
T ss_dssp -----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH--HHHHHHHCTTSC
T ss_pred ccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHH--HHHHHHhCcccc
Confidence 22 2345679999999999875 468999999999999999999999996532211 111111111111
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 639 MELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
... .... ...+.+++.+||+.||++||++.|+++.
T Consensus 287 ~~~-----~~~~----~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 287 IEF-----PDIP----EKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp CCC-----CCCS----CHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCC-----Cccc----hHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 111 1111 2348899999999999999999999865
No 135
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.3e-40 Score=357.99 Aligned_cols=259 Identities=21% Similarity=0.255 Sum_probs=202.2
Q ss_pred HHHhhcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc-----CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeC
Q 004400 411 IKAATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK-----SKQGNREFINEIGMISALQHPNLVKLYGCCIEG 484 (756)
Q Consensus 411 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 484 (756)
+....++|...+.||+|+||.||+|.. .+++.||+|++... .....+.+.+|++++++++||||+++++++.++
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 345667899999999999999999994 57889999998653 234457899999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhc---------------------------------------CCCCCHHHHHHHHHHHHHH
Q 004400 485 NQLLLIYEYLENNSLARALFEH---------------------------------------RLKLDWPTRRRICLGIARG 525 (756)
Q Consensus 485 ~~~~lV~e~~~~gsL~~~l~~~---------------------------------------~~~l~~~~~~~i~~~ia~~ 525 (756)
+..++||||+++|+|.+++... ...+++..+..++.||+.|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999988410 1123567788999999999
Q ss_pred HHHHHcCCCCCeEcCCCCCCceEecCCC--CEEEccCCccccCcccCc---ceeeccccCccCCchHhhhc--CCCCccc
Q 004400 526 LAYLHGESRIKVVHRDIKATNVLLDKDL--NSKISDFGLAKLDEEENT---HISTRVAGTIGYMAPEYAMR--GHLTEKA 598 (756)
Q Consensus 526 L~~LH~~g~~~iiH~Dikp~Nill~~~~--~~kl~DFGla~~~~~~~~---~~~~~~~gt~~y~aPE~~~~--~~~~~~~ 598 (756)
|+|||+.+ |+||||||+||+++.++ .+||+|||+++....... .......||+.|+|||++.+ ..++.++
T Consensus 181 l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~ 257 (345)
T 3hko_A 181 LHYLHNQG---ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKC 257 (345)
T ss_dssp HHHHHHTT---EECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHH
T ss_pred HHHHHHCC---ccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHH
Confidence 99999997 99999999999998776 899999999986543221 12345679999999999975 6789999
Q ss_pred chhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHH
Q 004400 599 DVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSS 678 (756)
Q Consensus 599 Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~e 678 (756)
|||||||++|||++|+.||........... ......... .+ ....+ ...+.+++.+||+.||.+||++.|
T Consensus 258 DiwslG~il~el~~g~~pf~~~~~~~~~~~---~~~~~~~~~--~~-~~~~~----~~~~~~li~~~l~~~p~~Rps~~~ 327 (345)
T 3hko_A 258 DAWSAGVLLHLLLMGAVPFPGVNDADTISQ---VLNKKLCFE--NP-NYNVL----SPLARDLLSNLLNRNVDERFDAMR 327 (345)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSSHHHHHHH---HHHCCCCTT--SG-GGGGS----CHHHHHHHHHHSCSCTTTSCCHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCChHHHHHH---HHhcccccC--Cc-ccccC----CHHHHHHHHHHcCCChhHCCCHHH
Confidence 999999999999999999976654433221 111111000 00 00112 234889999999999999999999
Q ss_pred HHHH
Q 004400 679 VLRM 682 (756)
Q Consensus 679 v~~~ 682 (756)
+++.
T Consensus 328 ~l~h 331 (345)
T 3hko_A 328 ALQH 331 (345)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 9873
No 136
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=3.3e-40 Score=351.08 Aligned_cols=252 Identities=22% Similarity=0.285 Sum_probs=206.8
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcc------cHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQ------GNREFINEIGMISALQHPNLVKLYGCCIEGNQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 487 (756)
.++|...+.||+|+||.||+|+. .+|+.||+|.+...... ..+.+.+|+.++++++||||+++++++.+++..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 45788999999999999999995 57899999998754221 357799999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCC----CEEEccCCcc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDL----NSKISDFGLA 563 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~----~~kl~DFGla 563 (756)
++||||+++++|.+++... ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++ .+||+|||++
T Consensus 91 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~---ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~ 166 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQK-ESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (321)
T ss_dssp EEEECCCCSCBHHHHHHTC-SCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCCTTC
T ss_pred EEEEEcCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChHHEEEecCCCCcCCEEEccCccc
Confidence 9999999999999999654 47899999999999999999999997 99999999999999888 7999999999
Q ss_pred ccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccc
Q 004400 564 KLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVD 643 (756)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (756)
+....... .....||+.|+|||++.+..++.++||||||+++|+|++|+.||............ .... . . .+
T Consensus 167 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i---~~~~-~-~-~~ 238 (321)
T 2a2a_A 167 HEIEDGVE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANI---TSVS-Y-D-FD 238 (321)
T ss_dssp EECCTTCC--CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHH---HTTC-C-C-CC
T ss_pred eecCcccc--ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---Hhcc-c-c-cC
Confidence 86554322 23457999999999999889999999999999999999999999766543332211 1100 0 0 00
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 644 TNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 644 ~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.......+ ..+.+++.+|++.||++|||+.|+++.
T Consensus 239 ~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~e~l~h 273 (321)
T 2a2a_A 239 EEFFSHTS----ELAKDFIRKLLVKETRKRLTIQEALRH 273 (321)
T ss_dssp HHHHTTCC----HHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred hhhhcccC----HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 00001122 348899999999999999999999874
No 137
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=3.3e-40 Score=346.54 Aligned_cols=264 Identities=21% Similarity=0.259 Sum_probs=204.0
Q ss_pred hhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEE-EeCCeEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCC-IEGNQLLLIY 491 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lV~ 491 (756)
..++|...+.||+|+||.||+|+ ..+++.||||++..... ...+.+|+.+++.++|++++..++++ .+++..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 35789999999999999999999 46789999998754432 24588899999999988877766655 6778899999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe---cCCCCEEEccCCccccCcc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL---DKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill---~~~~~~kl~DFGla~~~~~ 568 (756)
||+ +++|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||++ +.++.+||+|||+++....
T Consensus 85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~ 160 (296)
T 4hgt_A 85 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 160 (296)
T ss_dssp ECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred Ecc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeeeeccCCCCeEEEecCccceeccC
Confidence 999 99999999876678999999999999999999999997 9999999999999 7889999999999986654
Q ss_pred cCcc------eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccccc
Q 004400 569 ENTH------ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELV 642 (756)
Q Consensus 569 ~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (756)
.... ......||+.|+|||.+.+..++.++|||||||++|||++|+.||................... . ...
T Consensus 161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-~-~~~ 238 (296)
T 4hgt_A 161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKK-M-STP 238 (296)
T ss_dssp TTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHH-H-HSC
T ss_pred cccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhccc-c-cch
Confidence 3321 2234679999999999999999999999999999999999999996533211111110000000 0 000
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCccc
Q 004400 643 DTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDV 689 (756)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~ 689 (756)
.......++ ..+.+++.+||+.||++||++.++++.|+.+...
T Consensus 239 ~~~~~~~~~----~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~ 281 (296)
T 4hgt_A 239 IEVLCKGYP----SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 281 (296)
T ss_dssp HHHHTTTSC----HHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred hhhhhccCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 000001122 3488999999999999999999999999976543
No 138
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=5.9e-40 Score=365.22 Aligned_cols=247 Identities=25% Similarity=0.426 Sum_probs=205.7
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC---cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS---KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|+. .+|+.||||++.... ......+.+|+.+++.++||||+++++++.+++..++|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 35788999999999999999995 479999999986532 22346789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++|+|.+++... ..+++..+..++.||+.||+|||+.| |+||||||+||+++.++.+||+|||+++......
T Consensus 95 ~E~~~gg~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~ 170 (476)
T 2y94_A 95 MEYVSGGELFDYICKN-GRLDEKESRRLFQQILSGVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170 (476)
T ss_dssp EECCSSEEHHHHTTSS-SSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEECTTCCEEECCCSSCEECCTTC
T ss_pred EeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---CCcccccHHHEEEecCCCeEEEeccchhhccccc
Confidence 9999999999998644 47999999999999999999999997 9999999999999999999999999998755432
Q ss_pred cceeeccccCccCCchHhhhcCCC-CcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHL-TEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
.....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||...+....... +.. +.. . ....
T Consensus 171 --~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~---i~~-~~~-~-----~p~~ 238 (476)
T 2y94_A 171 --FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKK---ICD-GIF-Y-----TPQY 238 (476)
T ss_dssp --CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHH---HHT-TCC-C-----CCTT
T ss_pred --cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHH---Hhc-CCc-C-----CCcc
Confidence 2234679999999999988765 7899999999999999999999976654433221 111 110 0 1112
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
.+ ..+.+++.+||+.||++|||+.|+++
T Consensus 239 ~s----~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 239 LN----PSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp CC----HHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CC----HHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 23 34889999999999999999999986
No 139
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.5e-40 Score=349.61 Aligned_cols=256 Identities=27% Similarity=0.403 Sum_probs=205.4
Q ss_pred CccccCcccCCCCccEEEeecc-CC---cEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeE-EEE
Q 004400 417 NFATDNNIGEGGFGPVYKGLLA-DG---TAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQL-LLI 490 (756)
Q Consensus 417 ~~~~~~~lg~G~~g~Vy~~~~~-~~---~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-~lV 490 (756)
.|...+.||+|+||.||+|... ++ ..||+|.+.... ....+.+.+|+.++++++||||+++++++.+++.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 4566789999999999999843 23 379999987543 23456789999999999999999999999876655 999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+.+|+|.+++......+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++......
T Consensus 102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~ 178 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQK---FVHRDLAARNCMLDESFTVKVADFGLARDILDRE 178 (298)
T ss_dssp ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGG
T ss_pred EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEEeCcCCCcccccCCc
Confidence 9999999999999876778999999999999999999999997 9999999999999999999999999998654332
Q ss_pred c---ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCC-CccchhhHHHHHHHHHhcCccccccccCC
Q 004400 571 T---HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNV-TKEDMFYLLDWALVLKEQGKLMELVDTNP 646 (756)
Q Consensus 571 ~---~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (756)
. .......||+.|+|||.+.+..++.++||||||+++|||++|+.|+ ...+....... ... .... ..
T Consensus 179 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~---~~~-~~~~-----~~ 249 (298)
T 3pls_A 179 YYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHF---LAQ-GRRL-----PQ 249 (298)
T ss_dssp GGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHH---HHT-TCCC-----CC
T ss_pred ccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHH---hhc-CCCC-----CC
Confidence 1 1223456889999999999999999999999999999999966665 33333322221 111 1111 01
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 647 GSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 647 ~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
....+ ..+.+++.+||+.||.+|||+.++++.|+++..
T Consensus 250 ~~~~~----~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~ 287 (298)
T 3pls_A 250 PEYCP----DSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVS 287 (298)
T ss_dssp CTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred Cccch----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 11222 348899999999999999999999999997644
No 140
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=354.17 Aligned_cols=262 Identities=20% Similarity=0.327 Sum_probs=200.1
Q ss_pred cCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcc-cHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 416 NNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQ-GNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
++|...+.||+|+||.||+|+. .+++.||+|++...... ....+.+|++++++++||||+++++++.+++..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 5788999999999999999995 47899999998654322 122456799999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcce
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHI 573 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~ 573 (756)
++ |+|.+++......+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++........
T Consensus 82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~- 156 (324)
T 3mtl_A 82 LD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT- 156 (324)
T ss_dssp CS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCCGGGEEECTTCCEEECSSSEEECC-------
T ss_pred cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCcCHHHEEECCCCCEEEccCcccccccCCccc-
Confidence 98 5899999877778999999999999999999999997 999999999999999999999999999865433222
Q ss_pred eeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccc---ccc------
Q 004400 574 STRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLME---LVD------ 643 (756)
Q Consensus 574 ~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~------ 643 (756)
.....||+.|+|||++.+ ..++.++||||+||++|||++|+.||...+................... ...
T Consensus 157 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 236 (324)
T 3mtl_A 157 YDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKT 236 (324)
T ss_dssp ------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHH
T ss_pred cccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcc
Confidence 234568999999999876 5689999999999999999999999977765554443332222111100 000
Q ss_pred ---cCCCCC----CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 644 ---TNPGSN----FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 644 ---~~~~~~----~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
+..... ..+.....+.+++.+|++.||++|||+.|+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 282 (324)
T 3mtl_A 237 YNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH 282 (324)
T ss_dssp TCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred cccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence 000000 001112357899999999999999999999863
No 141
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.7e-40 Score=355.45 Aligned_cols=267 Identities=23% Similarity=0.316 Sum_probs=202.7
Q ss_pred HHHhhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcc-----cHHHHHHHHHHHHhCCCCceeeEeeEEEeC
Q 004400 411 IKAATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQ-----GNREFINEIGMISALQHPNLVKLYGCCIEG 484 (756)
Q Consensus 411 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 484 (756)
+....++|...+.||+|+||.||+|+. .+|+.||||++...... ..+.+.+|+++++.++||||+++++++.++
T Consensus 5 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 84 (346)
T 1ua2_A 5 VKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHK 84 (346)
T ss_dssp --------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCT
T ss_pred hHHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeC
Confidence 344567899999999999999999995 46899999998753221 124688999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccc
Q 004400 485 NQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAK 564 (756)
Q Consensus 485 ~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~ 564 (756)
+..++||||+++ +|.+++......+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++
T Consensus 85 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~ 160 (346)
T 1ua2_A 85 SNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAK 160 (346)
T ss_dssp TCCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCGGGS
T ss_pred CceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEEcCCCCEEEEecccce
Confidence 999999999986 899988776667999999999999999999999997 9999999999999999999999999998
Q ss_pred cCcccCcceeeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccc
Q 004400 565 LDEEENTHISTRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVD 643 (756)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (756)
....... ......||+.|+|||++.+. .++.++|||||||++|||++|..||...+.....................+
T Consensus 161 ~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 239 (346)
T 1ua2_A 161 SFGSPNR-AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPD 239 (346)
T ss_dssp TTTSCCC-CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSS
T ss_pred eccCCcc-cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhh
Confidence 7644322 23345789999999999764 589999999999999999999999977665443332222111111111000
Q ss_pred c---------CCCCCCC-----HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 644 T---------NPGSNFD-----KEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 644 ~---------~~~~~~~-----~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
. ......+ ......+.+++.+|++.||++|||+.|+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 240 MCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp TTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred hccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 0 0000011 1122458899999999999999999999875
No 142
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=5e-40 Score=347.84 Aligned_cols=259 Identities=26% Similarity=0.448 Sum_probs=198.4
Q ss_pred cCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
++|...+.||+|+||.||+|. ..+|+.||||++... .......+.+|+.++++++||||+++++++.+++..++||
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 111 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL 111 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence 578899999999999999999 467999999998753 2334567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 492 EYLENNSLARALFE---HRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 492 e~~~~gsL~~~l~~---~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
||+++|+|.+++.. ....+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++....
T Consensus 112 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~ 188 (310)
T 2wqm_A 112 ELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFSS 188 (310)
T ss_dssp ECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCC--------
T ss_pred ecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCcHHHEEEcCCCCEEEEeccceeeecC
Confidence 99999999999863 3557899999999999999999999997 99999999999999999999999999986544
Q ss_pred cCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCC
Q 004400 569 ENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGS 648 (756)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (756)
... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||...... .......... ...... ...
T Consensus 189 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~~~~~~~~-~~~~~~----~~~ 261 (310)
T 2wqm_A 189 KTT-AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN-LYSLCKKIEQ-CDYPPL----PSD 261 (310)
T ss_dssp -----------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC-HHHHHHHHHT-TCSCCC----CTT
T ss_pred CCc-cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh-HHHHHHHhhc-ccCCCC----ccc
Confidence 322 223456899999999999999999999999999999999999999654321 1111111111 111111 112
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 649 NFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 649 ~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.++ ..+.+++.+||+.||++||++.+|++.|+.+..
T Consensus 262 ~~~----~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~ 297 (310)
T 2wqm_A 262 HYS----EELRQLVNMCINPDPEKRPDVTYVYDVAKRMHA 297 (310)
T ss_dssp TSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ccC----HHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence 233 348899999999999999999999999986644
No 143
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=1.9e-40 Score=349.04 Aligned_cols=258 Identities=26% Similarity=0.418 Sum_probs=204.8
Q ss_pred hcCccccCcccCCCCccEEEeeccC----CcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEE-eCCeEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLAD----GTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCI-EGNQLL 488 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~-~~~~~~ 488 (756)
...|...+.||+|+||.||+|+..+ ...||+|.+.... ....+.+.+|+.++++++||||++++++|. .++..+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 4568888999999999999998532 2358999987543 334567899999999999999999999965 456789
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
+||||+++|+|.+++......+++..+..++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++....
T Consensus 104 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 180 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYD 180 (298)
T ss_dssp EEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSCGGGCCCSC
T ss_pred EEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEECCCCCEEECcccccccccc
Confidence 999999999999999876778999999999999999999999997 99999999999999999999999999986544
Q ss_pred cCc---ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhC-CCCCCccchhhHHHHHHHHHhcCcccccccc
Q 004400 569 ENT---HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSG-RSNVTKEDMFYLLDWALVLKEQGKLMELVDT 644 (756)
Q Consensus 569 ~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (756)
... .......||+.|+|||.+.+..++.++||||||+++|||++| ..||...+....... ... .....
T Consensus 181 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~---~~~-~~~~~---- 252 (298)
T 3f66_A 181 KEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVY---LLQ-GRRLL---- 252 (298)
T ss_dssp GGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHH---HHT-TCCCC----
T ss_pred cchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHH---Hhc-CCCCC----
Confidence 322 123345678899999999999999999999999999999995 555544443332221 111 11100
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 645 NPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 645 ~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.....+ ..+.+++.+||+.+|++||++.|+++.|+++..
T Consensus 253 -~~~~~~----~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~ 291 (298)
T 3f66_A 253 -QPEYCP----DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS 291 (298)
T ss_dssp -CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -CCccCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 111222 348899999999999999999999999997654
No 144
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=8.3e-40 Score=347.12 Aligned_cols=256 Identities=20% Similarity=0.289 Sum_probs=197.9
Q ss_pred cCccc-cCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEEEEEE
Q 004400 416 NNFAT-DNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 416 ~~~~~-~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e 492 (756)
+.|.+ .+.||+|+||.||+|. ..+++.||||++..........+.+|++++.++ +||||+++++++.+++..++|||
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e 91 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE 91 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence 46666 4789999999999999 457999999999776556677899999999985 79999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC---EEEccCCccccCccc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN---SKISDFGLAKLDEEE 569 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~---~kl~DFGla~~~~~~ 569 (756)
|+++|+|.+++... ..+++..+..++.||+.||+|||+++ |+||||||+||+++.++. +||+|||+++.....
T Consensus 92 ~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~ 167 (316)
T 2ac3_A 92 KMRGGSILSHIHKR-RHFNELEASVVVQDVASALDFLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLN 167 (316)
T ss_dssp CCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESCSSSSCSEEECCTTCCC-----
T ss_pred cCCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEEccCCCcCceEEEEccCccccccC
Confidence 99999999999765 47899999999999999999999996 999999999999998776 999999999765422
Q ss_pred Cc------ceeeccccCccCCchHhhhc-----CCCCcccchhhHHHHHHHHHhCCCCCCccchhh------------HH
Q 004400 570 NT------HISTRVAGTIGYMAPEYAMR-----GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFY------------LL 626 (756)
Q Consensus 570 ~~------~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~------------~~ 626 (756)
.. .......||+.|+|||++.. ..++.++|||||||++|||++|+.||....... ..
T Consensus 168 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 247 (316)
T 2ac3_A 168 GDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQN 247 (316)
T ss_dssp --------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHH
T ss_pred CccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHH
Confidence 11 11223569999999999975 558899999999999999999999996543211 00
Q ss_pred HHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 627 DWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
........ ... ..... ..... ...+.+++.+|++.||++|||+.|+++.
T Consensus 248 ~~~~~i~~-~~~-~~~~~-~~~~~----~~~~~~li~~~L~~dP~~Rps~~e~l~h 296 (316)
T 2ac3_A 248 MLFESIQE-GKY-EFPDK-DWAHI----SCAAKDLISKLLVRDAKQRLSAAQVLQH 296 (316)
T ss_dssp HHHHHHHH-CCC-CCCHH-HHTTS----CHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHHHHHhc-cCc-ccCch-hcccC----CHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence 00011111 110 00000 00111 2358899999999999999999999874
No 145
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=9.7e-41 Score=357.08 Aligned_cols=259 Identities=28% Similarity=0.401 Sum_probs=208.9
Q ss_pred HhhcCccccCcccCCCCccEEEeecc-CC-----cEEEEEEccccC-cccHHHHHHHHHHHHhC-CCCceeeEeeEEEeC
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGLLA-DG-----TAIAVKQLSSKS-KQGNREFINEIGMISAL-QHPNLVKLYGCCIEG 484 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~-----~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 484 (756)
...++|...+.||+|+||.||+|... ++ +.||+|.+.... ....+.+.+|+.+++++ +||||++++++|.++
T Consensus 43 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~ 122 (333)
T 2i1m_A 43 FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG 122 (333)
T ss_dssp CCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecC
Confidence 34578999999999999999999843 23 479999997643 23456789999999999 899999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhc-------------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC
Q 004400 485 NQLLLIYEYLENNSLARALFEH-------------RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK 551 (756)
Q Consensus 485 ~~~~lV~e~~~~gsL~~~l~~~-------------~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~ 551 (756)
+..++||||+++|+|.+++... ...+++..+..++.|++.||+|||+.+ |+||||||+||+++.
T Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~ 199 (333)
T 2i1m_A 123 GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTN 199 (333)
T ss_dssp SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGCEEEG
T ss_pred CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCcccceEEECC
Confidence 9999999999999999999743 346899999999999999999999996 999999999999999
Q ss_pred CCCEEEccCCccccCcccCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHH
Q 004400 552 DLNSKISDFGLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWA 629 (756)
Q Consensus 552 ~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~ 629 (756)
++.+||+|||+++........ ......||+.|+|||.+.+..++.++|||||||++|||++ |..||..........
T Consensus 200 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~-- 277 (333)
T 2i1m_A 200 GHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFY-- 277 (333)
T ss_dssp GGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHH--
T ss_pred CCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHH--
Confidence 999999999999865443322 2334567889999999999999999999999999999999 899996543322111
Q ss_pred HHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccC
Q 004400 630 LVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECG 686 (756)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~ 686 (756)
.......... .....+ ..+.+++.+||+.||.+|||+.|+++.|++.
T Consensus 278 -~~~~~~~~~~-----~~~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~ 324 (333)
T 2i1m_A 278 -KLVKDGYQMA-----QPAFAP----KNIYSIMQACWALEPTHRPTFQQICSFLQEQ 324 (333)
T ss_dssp -HHHHHTCCCC-----CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -HHHhcCCCCC-----CCCCCC----HHHHHHHHHHhccChhhCcCHHHHHHHHHHH
Confidence 1111111110 111122 3488999999999999999999999999854
No 146
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=4.7e-40 Score=350.86 Aligned_cols=255 Identities=30% Similarity=0.449 Sum_probs=204.5
Q ss_pred cCccccCcccCCCCccEEEeec-cCCcE--EEEEEcccc-CcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLL-ADGTA--IAVKQLSSK-SKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~--vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV 490 (756)
++|...+.||+|+||.||+|+. .++.. ||+|.+... .....+.+.+|+++++++ +||||+++++++.+++..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 5788899999999999999995 45654 499988653 233456789999999999 899999999999999999999
Q ss_pred EEecCCCCHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCE
Q 004400 491 YEYLENNSLARALFEHR---------------LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNS 555 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~ 555 (756)
|||+++|+|.+++.... ..+++..++.++.|++.||+|||+.+ |+||||||+||+++.++.+
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~~ 181 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVA 181 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCE
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCccceEEEcCCCeE
Confidence 99999999999997543 47899999999999999999999997 9999999999999999999
Q ss_pred EEccCCccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHh
Q 004400 556 KISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKE 634 (756)
Q Consensus 556 kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~ 634 (756)
||+|||+++...... ......+++.|+|||++.+..++.++||||||+++|||++ |+.||............ .
T Consensus 182 kL~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~----~ 255 (327)
T 1fvr_A 182 KIADFGLSRGQEVYV--KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKL----P 255 (327)
T ss_dssp EECCTTCEESSCEEC--CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHG----G
T ss_pred EEcccCcCccccccc--cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHh----h
Confidence 999999997433221 1233457889999999998889999999999999999998 99999766543332211 1
Q ss_pred cCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 635 QGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.+.. ......++ ..+.+++.+||+.||++||++.|+++.|+.+..
T Consensus 256 ~~~~-----~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 300 (327)
T 1fvr_A 256 QGYR-----LEKPLNCD----DEVYDLMRQCWREKPYERPSFAQILVSLNRMLE 300 (327)
T ss_dssp GTCC-----CCCCTTBC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCCC-----CCCCCCCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 1110 11111223 348899999999999999999999999986544
No 147
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-40 Score=353.08 Aligned_cols=243 Identities=21% Similarity=0.332 Sum_probs=202.7
Q ss_pred hhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCc--------ccHHHHHHHHHHHHhCCCCceeeEeeEEEeC
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSK--------QGNREFINEIGMISALQHPNLVKLYGCCIEG 484 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 484 (756)
..++|...+.||+|+||.||+|+ ..+++.||||++..... .....+.+|+.++++++||||++++++|.++
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 45689999999999999999998 56789999999875421 1234577899999999999999999999999
Q ss_pred CeEEEEEEecCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCcc
Q 004400 485 NQLLLIYEYLENN-SLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLA 563 (756)
Q Consensus 485 ~~~~lV~e~~~~g-sL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla 563 (756)
+..++||||+.+| +|.+++... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||++
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~a 177 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRH-PRLDEPLASYIFRQLVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSA 177 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTC-CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred CEEEEEEEeCCCCccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC---eEEeccCHHHEEEcCCCcEEEeecccc
Confidence 9999999999777 999998654 47999999999999999999999997 999999999999999999999999999
Q ss_pred ccCcccCcceeeccccCccCCchHhhhcCCC-CcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccccc
Q 004400 564 KLDEEENTHISTRVAGTIGYMAPEYAMRGHL-TEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELV 642 (756)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (756)
+....... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||...... .....
T Consensus 178 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--------------~~~~~ 241 (335)
T 3dls_A 178 AYLERGKL--FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET--------------VEAAI 241 (335)
T ss_dssp EECCTTCC--BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG--------------TTTCC
T ss_pred eECCCCCc--eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH--------------Hhhcc
Confidence 86654332 234579999999999988776 88999999999999999999999643211 00000
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 643 DTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
. ....++ ..+.+++.+||+.||++|||+.|+++.
T Consensus 242 ~--~~~~~~----~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 242 H--PPYLVS----KELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp C--CSSCCC----HHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred C--CCcccC----HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0 111223 348899999999999999999999885
No 148
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=2.6e-40 Score=372.88 Aligned_cols=253 Identities=26% Similarity=0.333 Sum_probs=207.0
Q ss_pred HhhcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEE
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 488 (756)
...++|...+.||+|+||.||+|+. .+|+.||||++... .......+.+|+++++.++|||||++++++.+++..+
T Consensus 181 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~ 260 (576)
T 2acx_A 181 VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALC 260 (576)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred ccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEE
Confidence 3457899999999999999999995 57999999998653 2234567889999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 489 LIYEYLENNSLARALFEHR-LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
+||||+++|+|.+++.... ..+++..+..++.||+.||+|||++| ||||||||+|||++.++.+||+|||+++...
T Consensus 261 lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~g---IvHrDLKPeNILld~~g~vKL~DFGla~~~~ 337 (576)
T 2acx_A 261 LVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGLAVHVP 337 (576)
T ss_dssp EEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCchheEEEeCCCCeEEEecccceecc
Confidence 9999999999999997543 35999999999999999999999997 9999999999999999999999999998665
Q ss_pred ccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHH-HHHHHHhcCccccccccCC
Q 004400 568 EENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLD-WALVLKEQGKLMELVDTNP 646 (756)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 646 (756)
.... ....+||+.|+|||++.+..++.++|||||||++|||++|+.||.......... ....... .. ...
T Consensus 338 ~~~~--~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~-~~------~~~ 408 (576)
T 2acx_A 338 EGQT--IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE-VP------EEY 408 (576)
T ss_dssp TTCC--EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHH-CC------CCC
T ss_pred cCcc--ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhc-cc------ccC
Confidence 4322 234589999999999998889999999999999999999999996643211111 1111111 10 001
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCCC-----CHHHHHH
Q 004400 647 GSNFDKEQVMVMINVALLCANASPTIRP-----SMSSVLR 681 (756)
Q Consensus 647 ~~~~~~~~~~~l~~l~~~c~~~~P~~RP-----t~~ev~~ 681 (756)
...++ ..+.+++.+|++.||++|| ++.||++
T Consensus 409 p~~~s----~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 409 SERFS----PQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp CTTSC----HHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred CccCC----HHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 12223 3488999999999999999 7888865
No 149
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=1.8e-40 Score=353.49 Aligned_cols=247 Identities=24% Similarity=0.322 Sum_probs=178.9
Q ss_pred cCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCC-CCceeeEeeEEEeCCeEEEEEEecCCCC
Q 004400 421 DNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQ-HPNLVKLYGCCIEGNQLLLIYEYLENNS 498 (756)
Q Consensus 421 ~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV~e~~~~gs 498 (756)
.+.||+|+||.||+|.. .+++.||||++... ....+.+|+.+++.+. ||||+++++++.++...++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 47899999999999995 57899999998643 3467889999999997 9999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCC---CEEEccCCccccCcccCcceee
Q 004400 499 LARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDL---NSKISDFGLAKLDEEENTHIST 575 (756)
Q Consensus 499 L~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~---~~kl~DFGla~~~~~~~~~~~~ 575 (756)
|.+++... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++.++ .+||+|||+++........ ..
T Consensus 93 L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~-~~ 167 (325)
T 3kn6_A 93 LFERIKKK-KHFSETEASYIMRKLVSAVSHMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQP-LK 167 (325)
T ss_dssp HHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------
T ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---CeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCc-cc
Confidence 99999765 47999999999999999999999997 99999999999998765 7999999999865443222 33
Q ss_pred ccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhH----HHHHHHHHhcCccccccccCCCCCCC
Q 004400 576 RVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYL----LDWALVLKEQGKLMELVDTNPGSNFD 651 (756)
Q Consensus 576 ~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (756)
...||+.|+|||++.+..++.++|||||||++|||++|+.||...+.... ....... ..+... ......
T Consensus 168 ~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i-~~~~~~------~~~~~~ 240 (325)
T 3kn6_A 168 TPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKI-KKGDFS------FEGEAW 240 (325)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHH-TTTCCC------CCSHHH
T ss_pred ccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHH-HcCCCC------CCcccc
Confidence 45789999999999999999999999999999999999999965432110 1111111 111100 000000
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 652 KEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 652 ~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
......+.+++.+|++.||++|||+.|+++.
T Consensus 241 ~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 271 (325)
T 3kn6_A 241 KNVSQEAKDLIQGLLTVDPNKRLKMSGLRYN 271 (325)
T ss_dssp HTSCHHHHHHHHHHHCCCTTTCCCTTTSTTC
T ss_pred cCCCHHHHHHHHHHCCCChhHCCCHHHHhcC
Confidence 1123458899999999999999999998754
No 150
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=1.3e-40 Score=355.10 Aligned_cols=258 Identities=28% Similarity=0.425 Sum_probs=205.9
Q ss_pred hcCccccCcccCCCCccEEEeec------cCCcEEEEEEcccc-CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL------ADGTAIAVKQLSSK-SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 487 (756)
.++|...+.||+|+||.||+|+. .+++.||||.+... .......+.+|+.++++++||||+++++++.+++..
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 46889999999999999999984 35678999999654 334456789999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC---CCCEEEc
Q 004400 488 LLIYEYLENNSLARALFEHR------LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK---DLNSKIS 558 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~------~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~---~~~~kl~ 558 (756)
++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC---eecCcCCHhHEEEecCCCcceEEEC
Confidence 99999999999999998653 35899999999999999999999997 999999999999984 4469999
Q ss_pred cCCccccCcccCc-ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcC
Q 004400 559 DFGLAKLDEEENT-HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQG 636 (756)
Q Consensus 559 DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~ 636 (756)
|||+++....... .......||+.|+|||.+.+..++.++||||||+++|||++ |+.||..........+. .. .
T Consensus 186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~---~~-~ 261 (327)
T 2yfx_A 186 DFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV---TS-G 261 (327)
T ss_dssp CCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHH---HT-T
T ss_pred ccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHH---hc-C
Confidence 9999975433222 22334568999999999999999999999999999999998 99999765544333221 11 1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 637 KLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.... ....++ ..+.+++.+||+.||.+||++.++++.|+.+..
T Consensus 262 ~~~~-----~~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~ 304 (327)
T 2yfx_A 262 GRMD-----PPKNCP----GPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 304 (327)
T ss_dssp CCCC-----CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCC-----CCCCCC----HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhc
Confidence 1111 112233 348899999999999999999999999986544
No 151
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=2.3e-40 Score=350.92 Aligned_cols=261 Identities=25% Similarity=0.396 Sum_probs=200.0
Q ss_pred HHhhcCccccCcccCCCCccEEEeecc----CCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC
Q 004400 412 KAATNNFATDNNIGEGGFGPVYKGLLA----DGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGN 485 (756)
Q Consensus 412 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 485 (756)
....++|...+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|+.++++++||||+++++++.+.+
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~ 109 (313)
T 3brb_A 30 VIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMS 109 (313)
T ss_dssp BCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC--
T ss_pred ccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecc
Confidence 345678999999999999999999843 34589999987542 333467899999999999999999999998755
Q ss_pred -----eEEEEEEecCCCCHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCE
Q 004400 486 -----QLLLIYEYLENNSLARALFE-----HRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNS 555 (756)
Q Consensus 486 -----~~~lV~e~~~~gsL~~~l~~-----~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~ 555 (756)
..++||||+++|+|.+++.. ....+++..++.++.|++.||+|||+.+ |+||||||+||+++.++.+
T Consensus 110 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~ 186 (313)
T 3brb_A 110 SQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRN---FLHRDLAARNCMLRDDMTV 186 (313)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCSGGGEEECTTSCE
T ss_pred ccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcE
Confidence 35999999999999999953 3356999999999999999999999986 9999999999999999999
Q ss_pred EEccCCccccCcccCcc-eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHH
Q 004400 556 KISDFGLAKLDEEENTH-ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLK 633 (756)
Q Consensus 556 kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~ 633 (756)
||+|||+++........ ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||............ .
T Consensus 187 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~---~ 263 (313)
T 3brb_A 187 CVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYL---L 263 (313)
T ss_dssp EECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHH---H
T ss_pred EEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHH---H
Confidence 99999999865443222 2233467889999999999999999999999999999999 88898665544333221 1
Q ss_pred hcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 634 EQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
. +..... ...++ ..+.+++.+||+.||.+||++.++++.|+.+..
T Consensus 264 ~-~~~~~~-----~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~ 308 (313)
T 3brb_A 264 H-GHRLKQ-----PEDCL----DELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLE 308 (313)
T ss_dssp T-TCCCCC-----BTTCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred c-CCCCCC-----Ccccc----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 1 111111 11222 348899999999999999999999999987644
No 152
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=1.7e-39 Score=350.20 Aligned_cols=264 Identities=22% Similarity=0.307 Sum_probs=205.9
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEe--------
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIE-------- 483 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-------- 483 (756)
.++|...+.||+|+||.||+|+. .+|+.||||++.... ......+.+|+++++.++||||+++++++.+
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 35789999999999999999995 679999999986543 2234678899999999999999999999987
Q ss_pred CCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCcc
Q 004400 484 GNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLA 563 (756)
Q Consensus 484 ~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla 563 (756)
.+..++||||+++ +|.+.+......+++..+..++.|++.||+|||+.| |+||||||+|||++.++.+||+|||++
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 171 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLA 171 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCCEEEccchhc
Confidence 4568999999985 788888766668999999999999999999999997 999999999999999999999999999
Q ss_pred ccCcccC---cceeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccc
Q 004400 564 KLDEEEN---THISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLM 639 (756)
Q Consensus 564 ~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 639 (756)
+...... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||......................
T Consensus 172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~ 251 (351)
T 3mi9_A 172 RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPE 251 (351)
T ss_dssp EECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTT
T ss_pred ccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChh
Confidence 8654322 122344678999999999876 458999999999999999999999997766554443332222111100
Q ss_pred cc-----------cccCCCCCCCH-HH------HHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 640 EL-----------VDTNPGSNFDK-EQ------VMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 640 ~~-----------~~~~~~~~~~~-~~------~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.. ........... +. ...+.+++.+|++.||++|||+.|+++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 312 (351)
T 3mi9_A 252 VWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 312 (351)
T ss_dssp TSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred hccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence 00 00000000011 11 2347899999999999999999999874
No 153
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=3.2e-40 Score=346.03 Aligned_cols=254 Identities=26% Similarity=0.383 Sum_probs=204.4
Q ss_pred hcCccccC-cccCCCCccEEEeec---cCCcEEEEEEccccCc--ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEE
Q 004400 415 TNNFATDN-NIGEGGFGPVYKGLL---ADGTAIAVKQLSSKSK--QGNREFINEIGMISALQHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 415 ~~~~~~~~-~lg~G~~g~Vy~~~~---~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 488 (756)
.++|...+ .||+|+||.||+|.. .+++.||||++..... ...+.+.+|+++++.++||||+++++++ +.+..+
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 35677777 999999999999953 3578899999976432 2356799999999999999999999999 667789
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
+||||+++++|.+++... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++....
T Consensus 94 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 169 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRA 169 (291)
T ss_dssp EEEECCTTEEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred EEEEeCCCCCHHHHHHhC-cCCCHHHHHHHHHHHHHHHHHHHhCC---eEcCCCCcceEEEeCCCcEEEccCCcceeecc
Confidence 999999999999999764 46999999999999999999999997 99999999999999999999999999986654
Q ss_pred cCcce--eeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccC
Q 004400 569 ENTHI--STRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTN 645 (756)
Q Consensus 569 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (756)
..... .....||+.|+|||.+.+..++.++||||||+++|||++ |+.||............ ........
T Consensus 170 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~----~~~~~~~~---- 241 (291)
T 1xbb_A 170 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAML----EKGERMGC---- 241 (291)
T ss_dssp TCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHH----HTTCCCCC----
T ss_pred CCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH----HcCCCCCC----
Confidence 43322 222456789999999998889999999999999999999 99999766544332211 11111111
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccC
Q 004400 646 PGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECG 686 (756)
Q Consensus 646 ~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~ 686 (756)
...++ ..+.+++.+||+.||++||++.++++.|+.+
T Consensus 242 -~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 277 (291)
T 1xbb_A 242 -PAGCP----REMYDLMNLCWTYDVENRPGFAAVELRLRNY 277 (291)
T ss_dssp -CTTCC----HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred -CCCCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11223 3488999999999999999999999999865
No 154
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=352.91 Aligned_cols=266 Identities=26% Similarity=0.400 Sum_probs=209.1
Q ss_pred hcCccccCcccCCCCccEEEeec-----cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC--eE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-----ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGN--QL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~ 487 (756)
.++|...+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 45788899999999999999983 468899999998766566678999999999999999999999987654 68
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
++||||+++|+|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 120 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~ 196 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLP 196 (326)
T ss_dssp EEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEEcCCCcEEEecCcchhhcc
Confidence 9999999999999999877677999999999999999999999996 9999999999999999999999999998765
Q ss_pred ccCcce--eeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcC-------cc
Q 004400 568 EENTHI--STRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQG-------KL 638 (756)
Q Consensus 568 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~-------~~ 638 (756)
...... .....++..|+|||.+.+..++.++||||||+++|||++|+.|+....... .. ...... ..
T Consensus 197 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~ 272 (326)
T 2w1i_A 197 QDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEF-MR---MIGNDKQGQMIVFHL 272 (326)
T ss_dssp SSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHH-HH---HHCTTCCTHHHHHHH
T ss_pred ccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHH-HH---hhccccchhhhHHHH
Confidence 443221 223457888999999998889999999999999999999999874321100 00 000000 00
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 639 MELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
.+.+........+......+.+++.+||+.||++||++.|+++.|+++.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~ 321 (326)
T 2w1i_A 273 IELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 321 (326)
T ss_dssp HHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 0000000000111122345889999999999999999999999998653
No 155
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=5e-40 Score=352.02 Aligned_cols=253 Identities=21% Similarity=0.342 Sum_probs=200.3
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~ 491 (756)
..++|+..+.||+|+||.||+|.. .+++.||||++..... ...+|++++.++ +||||+++++++.+++..|+||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 346789999999999999999995 5789999999965432 235688888888 7999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCC----CCEEEccCCccccCc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKD----LNSKISDFGLAKLDE 567 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~----~~~kl~DFGla~~~~ 567 (756)
||+++|+|.+++... ..+++..+..++.||+.||+|||+.| |+||||||+|||+.++ +.+||+|||+++...
T Consensus 96 E~~~gg~L~~~i~~~-~~~~~~~~~~~~~qi~~al~~lH~~g---ivHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~ 171 (342)
T 2qr7_A 96 ELMKGGELLDKILRQ-KFFSEREASAVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR 171 (342)
T ss_dssp CCCCSCBHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSCSGGGEEECCCTTCEECB
T ss_pred eCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---cEeccCCHHHEEEecCCCCcCeEEEEECCCcccCc
Confidence 999999999999754 47999999999999999999999997 9999999999998543 349999999998654
Q ss_pred ccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 568 EENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
.... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||..............+.. +... ......
T Consensus 172 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~-~~~~--~~~~~~ 247 (342)
T 2qr7_A 172 AENG-LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGS-GKFS--LSGGYW 247 (342)
T ss_dssp CTTC-CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHH-CCCC--CCSTTT
T ss_pred CCCC-ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHcc-CCcc--cCcccc
Confidence 4332 23346799999999999888899999999999999999999999965322111111111111 1111 011111
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..++ ..+.+++.+|++.||++||++.|+++.
T Consensus 248 ~~~s----~~~~~li~~~L~~dP~~R~t~~~il~h 278 (342)
T 2qr7_A 248 NSVS----DTAKDLVSKMLHVDPHQRLTAALVLRH 278 (342)
T ss_dssp TTSC----HHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred ccCC----HHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 1223 348899999999999999999999753
No 156
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.1e-39 Score=350.65 Aligned_cols=260 Identities=24% Similarity=0.327 Sum_probs=205.5
Q ss_pred HhhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCC-----CCceeeEeeEEEeCCe
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQ-----HPNLVKLYGCCIEGNQ 486 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~~~~~~~~~ 486 (756)
...++|...+.||+|+||.||+|+. .+++.||||++... ......+..|+.+++.++ ||||+++++++...+.
T Consensus 32 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~ 110 (360)
T 3llt_A 32 LLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDH 110 (360)
T ss_dssp EETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTE
T ss_pred EecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCe
Confidence 3457899999999999999999995 67899999999642 334567788999999996 9999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC--------------
Q 004400 487 LLLIYEYLENNSLARALFEHR-LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK-------------- 551 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~-------------- 551 (756)
.++||||+ +++|.+++.... ..+++..+..++.||+.||+|||+.| |+||||||+|||++.
T Consensus 111 ~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~~~~~~~~~~~ 186 (360)
T 3llt_A 111 MCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMS---LTHTDLKPENILLDDPYFEKSLITVRRVT 186 (360)
T ss_dssp EEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCTTCCEEEEEEECTT
T ss_pred eEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCcccEEEccccccccccchhccc
Confidence 99999999 999999997543 45899999999999999999999997 999999999999975
Q ss_pred -----------CCCEEEccCCccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCcc
Q 004400 552 -----------DLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKE 620 (756)
Q Consensus 552 -----------~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~ 620 (756)
++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 187 ~~~~~~~~~~~~~~~kl~DFG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 262 (360)
T 3llt_A 187 DGKKIQIYRTKSTGIKLIDFGCATFKSDY----HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTH 262 (360)
T ss_dssp TCCEEEEEEESCCCEEECCCTTCEETTSC----CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ccccccccccCCCCEEEEeccCceecCCC----CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCC
Confidence 788999999999864432 23467899999999999999999999999999999999999999766
Q ss_pred chhhHHHHHHHHHhcC-----------cccccccc------CCCCCCCHH---------------HHHHHHHHHHHhhcC
Q 004400 621 DMFYLLDWALVLKEQG-----------KLMELVDT------NPGSNFDKE---------------QVMVMINVALLCANA 668 (756)
Q Consensus 621 ~~~~~~~~~~~~~~~~-----------~~~~~~~~------~~~~~~~~~---------------~~~~l~~l~~~c~~~ 668 (756)
+............... .....+.. -+....... ....+.+++.+||+.
T Consensus 263 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~ 342 (360)
T 3llt_A 263 EHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQI 342 (360)
T ss_dssp SHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCS
T ss_pred cHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcC
Confidence 5444332221111100 00000000 000000000 013577999999999
Q ss_pred CCCCCCCHHHHHH
Q 004400 669 SPTIRPSMSSVLR 681 (756)
Q Consensus 669 ~P~~RPt~~ev~~ 681 (756)
||++|||+.|+++
T Consensus 343 dP~~Rpta~elL~ 355 (360)
T 3llt_A 343 DPTLRPSPAELLK 355 (360)
T ss_dssp SGGGSCCHHHHTT
T ss_pred ChhhCCCHHHHhc
Confidence 9999999999875
No 157
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=5.6e-40 Score=365.95 Aligned_cols=259 Identities=21% Similarity=0.311 Sum_probs=197.8
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeC------C
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEG------N 485 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~ 485 (756)
.++|...+.||+|+||.||+|. ..+++.||||++... .....+.+.+|+.+++.++|||||++++++... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 4689999999999999999998 557899999999754 333456788999999999999999999999754 4
Q ss_pred eEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCcccc
Q 004400 486 QLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKL 565 (756)
Q Consensus 486 ~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~ 565 (756)
..|+|||||+++ |.+.+. ..+++..+..++.||+.||+|||+.| |+||||||+|||++.++.+||+|||+|+.
T Consensus 141 ~~~lv~E~~~~~-l~~~~~---~~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDlkp~NIll~~~~~~kl~DFG~a~~ 213 (464)
T 3ttj_A 141 DVYLVMELMDAN-LCQVIQ---MELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLART 213 (464)
T ss_dssp EEEEEEECCSEE-HHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCCC--
T ss_pred eEEEEEeCCCCC-HHHHHh---hcCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChHhEEEeCCCCEEEEEEEeeee
Confidence 679999999875 655553 35899999999999999999999997 99999999999999999999999999986
Q ss_pred CcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc--------
Q 004400 566 DEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK-------- 637 (756)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~-------- 637 (756)
..... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.+................
T Consensus 214 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~ 291 (464)
T 3ttj_A 214 AGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQ 291 (464)
T ss_dssp ---CC--CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSC
T ss_pred cCCCc--ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcc
Confidence 54422 23446799999999999999999999999999999999999999987665443222111111000
Q ss_pred --cccccccCCC---------------CC---CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 638 --LMELVDTNPG---------------SN---FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 638 --~~~~~~~~~~---------------~~---~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
....+...+. .. ........+.+++.+|++.||++|||+.|+++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 356 (464)
T 3ttj_A 292 PTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH 356 (464)
T ss_dssp HHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred hhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 0000000000 00 001124568999999999999999999999875
No 158
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.2e-40 Score=357.24 Aligned_cols=254 Identities=23% Similarity=0.301 Sum_probs=204.0
Q ss_pred hcCccccCcccCCCCccEEEeec----cCCcEEEEEEccccC----cccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCC
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL----ADGTAIAVKQLSSKS----KQGNREFINEIGMISAL-QHPNLVKLYGCCIEGN 485 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 485 (756)
.++|...+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|+++++++ +||||+++++++.+++
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 46889999999999999999986 478999999987532 22345677899999999 6999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCcccc
Q 004400 486 QLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKL 565 (756)
Q Consensus 486 ~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~ 565 (756)
..++||||+++|+|.+++.... .+++..+..++.||+.||+|||+.+ |+||||||+|||++.++.+||+|||+++.
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~DfG~a~~ 208 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKE 208 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred eEEEEeecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCcEEEeeCCCCee
Confidence 9999999999999999997543 7999999999999999999999996 99999999999999999999999999986
Q ss_pred CcccCcceeeccccCccCCchHhhhc--CCCCcccchhhHHHHHHHHHhCCCCCCccchhhH-HHHHHHHHhcCcccccc
Q 004400 566 DEEENTHISTRVAGTIGYMAPEYAMR--GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYL-LDWALVLKEQGKLMELV 642 (756)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~ 642 (756)
.............||+.|+|||++.+ ..++.++|||||||++|||++|+.||........ ...........
T Consensus 209 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~------ 282 (355)
T 1vzo_A 209 FVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSE------ 282 (355)
T ss_dssp CCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCC------
T ss_pred cccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccC------
Confidence 65444444455689999999999985 3478999999999999999999999964432111 11111111110
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCC-----CHHHHHHHh
Q 004400 643 DTNPGSNFDKEQVMVMINVALLCANASPTIRP-----SMSSVLRML 683 (756)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RP-----t~~ev~~~L 683 (756)
. .++......+.+++.+||+.||++|| ++.|+++..
T Consensus 283 -~----~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~ 323 (355)
T 1vzo_A 283 -P----PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL 323 (355)
T ss_dssp -C----CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred -C----CCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence 0 11112233488999999999999999 899987653
No 159
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=8.2e-40 Score=354.53 Aligned_cols=253 Identities=16% Similarity=0.148 Sum_probs=206.2
Q ss_pred HHhhcCccccCcccCCCCccEEEee------ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCC---CCceeeEeeEEE
Q 004400 412 KAATNNFATDNNIGEGGFGPVYKGL------LADGTAIAVKQLSSKSKQGNREFINEIGMISALQ---HPNLVKLYGCCI 482 (756)
Q Consensus 412 ~~~~~~~~~~~~lg~G~~g~Vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~ 482 (756)
+...++|...+.||+|+||.||+|+ ..+++.||||++... ...++.+|+++++.++ |+||+++++++.
T Consensus 61 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~ 137 (365)
T 3e7e_A 61 QLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHL 137 (365)
T ss_dssp ECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEE
T ss_pred EECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeee
Confidence 3456789999999999999999994 456899999999654 3457888888888887 999999999999
Q ss_pred eCCeEEEEEEecCCCCHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC-------
Q 004400 483 EGNQLLLIYEYLENNSLARALFE----HRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK------- 551 (756)
Q Consensus 483 ~~~~~~lV~e~~~~gsL~~~l~~----~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~------- 551 (756)
.++..++|||||++|+|.+++.. ....+++..+..++.||+.||+|||+.| ||||||||+|||++.
T Consensus 138 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~---ivHrDiKp~NIll~~~~~~~~~ 214 (365)
T 3e7e_A 138 FQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE---IIHGDIKPDNFILGNGFLEQDD 214 (365)
T ss_dssp CSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECGGGTCC--
T ss_pred cCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEecccccCccc
Confidence 99999999999999999999974 3457999999999999999999999986 999999999999998
Q ss_pred ----CCCEEEccCCccccCcc-cCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHH
Q 004400 552 ----DLNSKISDFGLAKLDEE-ENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLL 626 (756)
Q Consensus 552 ----~~~~kl~DFGla~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 626 (756)
++.+||+|||+|+.... .........+||+.|+|||++.+..++.++|||||||++|||+||+.||.......
T Consensus 215 ~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~-- 292 (365)
T 3e7e_A 215 EDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE-- 292 (365)
T ss_dssp ----CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE--
T ss_pred cccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc--
Confidence 89999999999975432 22233455689999999999999999999999999999999999999995432210
Q ss_pred HHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCC-CCHHHHHHHhccCcc
Q 004400 627 DWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIR-PSMSSVLRMLECGVD 688 (756)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~R-Pt~~ev~~~L~~~~~ 688 (756)
....... ..... ...+.+++..|++.+|.+| |++.++.+.|+.+..
T Consensus 293 ---------~~~~~~~----~~~~~---~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~ 339 (365)
T 3e7e_A 293 ---------CKPEGLF----RRLPH---LDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQ 339 (365)
T ss_dssp ---------EEECSCC----TTCSS---HHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred ---------eeechhc----cccCc---HHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHH
Confidence 0011111 11111 3347788899999999999 578888888886644
No 160
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=1.2e-40 Score=353.61 Aligned_cols=260 Identities=27% Similarity=0.401 Sum_probs=209.3
Q ss_pred HhhcCccccCcccCCCCccEEEeec------cCCcEEEEEEccccCc-ccHHHHHHHHHHHHhC-CCCceeeEeeEEEeC
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGLL------ADGTAIAVKQLSSKSK-QGNREFINEIGMISAL-QHPNLVKLYGCCIEG 484 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 484 (756)
...++|...+.||+|+||.||+|+. .+++.||||++..... ...+.+.+|+.+++++ +||||+++++++.++
T Consensus 24 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 103 (316)
T 2xir_A 24 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKP 103 (316)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCT
T ss_pred cchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecC
Confidence 3467899999999999999999973 3568999999976432 3346789999999999 799999999999875
Q ss_pred C-eEEEEEEecCCCCHHHHHHhcCCC---------------CCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceE
Q 004400 485 N-QLLLIYEYLENNSLARALFEHRLK---------------LDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVL 548 (756)
Q Consensus 485 ~-~~~lV~e~~~~gsL~~~l~~~~~~---------------l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nil 548 (756)
+ ..++||||+++|+|.+++...... +++..+..++.|++.||+|||+.+ |+||||||+||+
T Consensus 104 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dikp~Nil 180 (316)
T 2xir_A 104 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNIL 180 (316)
T ss_dssp TSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEE
T ss_pred CCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCC---cccccCccceEE
Confidence 4 589999999999999999755432 899999999999999999999996 999999999999
Q ss_pred ecCCCCEEEccCCccccCcccCc-ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHH
Q 004400 549 LDKDLNSKISDFGLAKLDEEENT-HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLL 626 (756)
Q Consensus 549 l~~~~~~kl~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~ 626 (756)
++.++.+||+|||+++....... .......||+.|+|||++.+..++.++||||||+++|||++ |+.||.........
T Consensus 181 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~ 260 (316)
T 2xir_A 181 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF 260 (316)
T ss_dssp ECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHH
T ss_pred ECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHH
Confidence 99999999999999986544332 22334568899999999999999999999999999999998 99999654322211
Q ss_pred HHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 627 DWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
...... +.... .....+ ..+.+++.+||+.||.+|||+.|+++.|+.+.
T Consensus 261 --~~~~~~-~~~~~-----~~~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 309 (316)
T 2xir_A 261 --CRRLKE-GTRMR-----APDYTT----PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 309 (316)
T ss_dssp --HHHHHH-TCCCC-----CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --HHHhcc-CccCC-----CCCCCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 111111 11111 111223 34889999999999999999999999998653
No 161
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=351.00 Aligned_cols=259 Identities=24% Similarity=0.302 Sum_probs=203.8
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEe----CCeEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIE----GNQLLL 489 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~l 489 (756)
.++|...+.||+|+||.||+|.. .+++.||||++........+.+.+|+++++.++||||+++++++.. ....++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 46789999999999999999994 6799999999876656666789999999999999999999999873 347899
Q ss_pred EEEecCCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 490 IYEYLENNSLARALFE---HRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~---~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
||||+++|+|.+++.. ....+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++..
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~ 184 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKG---YAHRDLKPTNILLGDEGQPVLMDLGSMNQA 184 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence 9999999999999975 3567999999999999999999999996 999999999999999999999999998754
Q ss_pred cccCcc--------eeeccccCccCCchHhhhcCC---CCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhc
Q 004400 567 EEENTH--------ISTRVAGTIGYMAPEYAMRGH---LTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQ 635 (756)
Q Consensus 567 ~~~~~~--------~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 635 (756)
...... ......||+.|+|||++.... ++.++||||||+++|||++|+.||........ ...... ..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~~~-~~ 262 (317)
T 2buj_A 185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGD-SVALAV-QN 262 (317)
T ss_dssp CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTS-CHHHHH-HC
T ss_pred ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccc-hhhHHh-hc
Confidence 321111 012345799999999987543 68999999999999999999999843211000 000001 11
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 636 GKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
. . . ......++ ..+.+++.+||+.||.+||++.++++.|+++.
T Consensus 263 ~-~-~---~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~ 305 (317)
T 2buj_A 263 Q-L-S---IPQSPRHS----SALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ 305 (317)
T ss_dssp C-------CCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred c-C-C---CCccccCC----HHHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence 0 0 0 00111223 34889999999999999999999999999654
No 162
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.1e-40 Score=351.38 Aligned_cols=264 Identities=25% Similarity=0.335 Sum_probs=201.4
Q ss_pred hhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhC--CCCceeeEeeEEEeC----CeE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISAL--QHPNLVKLYGCCIEG----NQL 487 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~~~----~~~ 487 (756)
..++|...+.||+|+||.||+|+.. ++.||||++... ....+.+|.+++... +||||+++++++.+. ...
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 110 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQL 110 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEE
T ss_pred cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCce
Confidence 4568999999999999999999875 899999998543 234556666666655 899999999999987 789
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCC-----CCCeEcCCCCCCceEecCCCCEEEccCCc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGES-----RIKVVHRDIKATNVLLDKDLNSKISDFGL 562 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g-----~~~iiH~Dikp~Nill~~~~~~kl~DFGl 562 (756)
++||||+++|+|.+++... .+++..+..++.|++.||+|||+.+ .++|+||||||+|||++.++.+||+|||+
T Consensus 111 ~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~ 188 (337)
T 3mdy_A 111 YLITDYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 188 (337)
T ss_dssp EEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred EEEEeccCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCC
Confidence 9999999999999999654 6899999999999999999999871 11399999999999999999999999999
Q ss_pred cccCcccCcce---eeccccCccCCchHhhhcCCCCcc------cchhhHHHHHHHHHhC----------CCCCCccchh
Q 004400 563 AKLDEEENTHI---STRVAGTIGYMAPEYAMRGHLTEK------ADVYSFGIVALEIVSG----------RSNVTKEDMF 623 (756)
Q Consensus 563 a~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~slGv~l~elltg----------~~p~~~~~~~ 623 (756)
++......... .....||+.|+|||++.+...+.+ +|||||||++|||++| +.||......
T Consensus 189 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~ 268 (337)
T 3mdy_A 189 AVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPS 268 (337)
T ss_dssp CEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCS
T ss_pred ceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCC
Confidence 97654332221 224579999999999987766665 9999999999999999 6666332111
Q ss_pred h--HHHHHHHHHhcCccccccccCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 624 Y--LLDWALVLKEQGKLMELVDTNPGS-NFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 624 ~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
. ........ ..... .+.... .........+.+++.+||+.||++|||+.||++.|+++.+
T Consensus 269 ~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~ 331 (337)
T 3mdy_A 269 DPSYEDMREIV-CIKKL----RPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSE 331 (337)
T ss_dssp SCCHHHHHHHH-TTSCC----CCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCchhhhHHHH-hhhcc----CccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHh
Confidence 0 11111111 11111 111111 1122566779999999999999999999999999997654
No 163
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=2.5e-40 Score=348.71 Aligned_cols=260 Identities=27% Similarity=0.425 Sum_probs=188.0
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
..++|...+.||+|+||.||+|.. .+++.||||.+.... ....+.+.+|+.++++++||||+++++++..++..++||
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM 92 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence 457899999999999999999984 578999999986542 334567889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHh-------cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccc
Q 004400 492 EYLENNSLARALFE-------HRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAK 564 (756)
Q Consensus 492 e~~~~gsL~~~l~~-------~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~ 564 (756)
||+++|+|.+++.. ....+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++
T Consensus 93 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~ 169 (303)
T 2vwi_A 93 KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG---QIHRDVKAGNILLGEDGSVQIADFGVSA 169 (303)
T ss_dssp ECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEECCCHHHH
T ss_pred hhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCCChhhEEEcCCCCEEEEeccchh
Confidence 99999999999973 2446899999999999999999999997 9999999999999999999999999997
Q ss_pred cCcccCc----ceeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc-c
Q 004400 565 LDEEENT----HISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK-L 638 (756)
Q Consensus 565 ~~~~~~~----~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~-~ 638 (756)
....... .......||+.|+|||++.+ ..++.++||||||+++|||++|+.||........... ....... .
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~--~~~~~~~~~ 247 (303)
T 2vwi_A 170 FLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLML--TLQNDPPSL 247 (303)
T ss_dssp HCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHH--HHTSSCCCT
T ss_pred eeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHH--HhccCCCcc
Confidence 6543221 11234579999999999876 5789999999999999999999999966544332211 1111100 0
Q ss_pred c-cccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 639 M-ELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 639 ~-~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
. ...+......++ ..+.+++.+||+.||.+||++.|+++.
T Consensus 248 ~~~~~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~~ll~h 288 (303)
T 2vwi_A 248 ETGVQDKEMLKKYG----KSFRKMISLCLQKDPEKRPTAAELLRH 288 (303)
T ss_dssp TC-----CCCCCCC----HHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred ccccccchhhhhhh----HHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 0 011111112233 348899999999999999999999863
No 164
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=6e-40 Score=359.23 Aligned_cols=251 Identities=20% Similarity=0.265 Sum_probs=191.2
Q ss_pred cCcccc-CcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHH-hCCCCceeeEeeEEEe----CCeEE
Q 004400 416 NNFATD-NNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMIS-ALQHPNLVKLYGCCIE----GNQLL 488 (756)
Q Consensus 416 ~~~~~~-~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~-~l~h~niv~l~~~~~~----~~~~~ 488 (756)
++|... +.||+|+||.||+|.. .+++.||||++.. ...+.+|++++. ..+||||++++++|.. ....|
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 456665 6899999999999994 5789999999853 246778998874 4589999999999876 56789
Q ss_pred EEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC---CCCEEEccCCccc
Q 004400 489 LIYEYLENNSLARALFEHR-LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK---DLNSKISDFGLAK 564 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~---~~~~kl~DFGla~ 564 (756)
+|||||++|+|.+++.... ..+++..+..++.||+.||+|||+.+ |+||||||+|||++. ++.+||+|||+++
T Consensus 136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~ 212 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAK 212 (400)
T ss_dssp EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSTTCCEEECCCTTCE
T ss_pred EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCcceEEEecCCCCccEEEEeccccc
Confidence 9999999999999997543 46999999999999999999999986 999999999999998 7889999999998
Q ss_pred cCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccccccc
Q 004400 565 LDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDT 644 (756)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (756)
...... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||..................+.. ....
T Consensus 213 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~-~~~~- 288 (400)
T 1nxk_A 213 ETTSHN--SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQY-EFPN- 288 (400)
T ss_dssp ECC-------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCC-CCCT-
T ss_pred ccCCCC--ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcc-cCCC-
Confidence 654322 223467999999999999889999999999999999999999999655432211000000111111 0000
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 645 NPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 645 ~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.....++ ..+.+++.+||+.||++|||+.|+++.
T Consensus 289 ~~~~~~s----~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 289 PEWSEVS----EEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp TTTTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred cccccCC----HHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0111223 348899999999999999999999875
No 165
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=4.4e-40 Score=351.27 Aligned_cols=261 Identities=21% Similarity=0.298 Sum_probs=195.4
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCc--ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSK--QGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
.++|...+.||+|+||.||+|+ ..+++.||||++..... .....+.+|++++++++||||+++++++.+++..++||
T Consensus 33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 112 (329)
T 3gbz_A 33 IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIF 112 (329)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEE
Confidence 4678999999999999999998 55789999999975432 22456789999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEec-----CCCCEEEccCCccccC
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLD-----KDLNSKISDFGLAKLD 566 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~-----~~~~~kl~DFGla~~~ 566 (756)
||+++ +|.+++.... .+++..+..++.||+.||+|||+.+ |+||||||+|||++ .++.+||+|||+++..
T Consensus 113 e~~~~-~L~~~~~~~~-~~~~~~~~~i~~ql~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~ 187 (329)
T 3gbz_A 113 EYAEN-DLKKYMDKNP-DVSMRVIKSFLYQLINGVNFCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAF 187 (329)
T ss_dssp ECCSE-EHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEC-----CCEEEECCTTHHHHH
T ss_pred ecCCC-CHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhCC---EECCCCCHHHEEEecCCCCccceEEECcCCCcccc
Confidence 99985 9999987554 6999999999999999999999997 99999999999994 4556999999999865
Q ss_pred cccCcceeeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccc---cc
Q 004400 567 EEENTHISTRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLME---LV 642 (756)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~ 642 (756)
..... ......||+.|+|||++.+. .++.++|||||||++|||++|+.||....................... ..
T Consensus 188 ~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (329)
T 3gbz_A 188 GIPIR-QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVT 266 (329)
T ss_dssp C------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGG
T ss_pred CCccc-ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhh
Confidence 43322 22345689999999999874 489999999999999999999999977655443322211111000000 00
Q ss_pred ------ccCCC-CCCCH------HHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 643 ------DTNPG-SNFDK------EQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 643 ------~~~~~-~~~~~------~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
...+. ..... .....+.+++.+|++.||++|||+.|+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 267 ALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp GSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 00000 00000 02235789999999999999999999986
No 166
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=8.7e-40 Score=341.16 Aligned_cols=250 Identities=23% Similarity=0.301 Sum_probs=202.1
Q ss_pred cCccccCcccCCCCccEEEeecc-CCcEEEEEEccccCc------ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKSK------QGNREFINEIGMISALQHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 488 (756)
++|...+.||+|+||.||+|+.. +++.||+|.+..... ...+.+.+|+.++++++||||+++++++.+++..+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 56889999999999999999954 789999999865421 13578999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCC----CEEEccCCccc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDL----NSKISDFGLAK 564 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~----~~kl~DFGla~ 564 (756)
+||||+++++|.+++... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++.++ .+||+|||++.
T Consensus 85 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~ 160 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEK-ESLTEDEATQFLKQILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH 160 (283)
T ss_dssp EEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred EEEeecCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChHHEEEecCCCCCCceEEEecccce
Confidence 999999999999999754 47899999999999999999999996 99999999999999877 79999999998
Q ss_pred cCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccccccc
Q 004400 565 LDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDT 644 (756)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (756)
....... .....||+.|+|||++.+..++.++||||||+++|+|++|+.||............ ........ .
T Consensus 161 ~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~--~~~~~~~~----~ 232 (283)
T 3bhy_A 161 KIEAGNE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNI--SAVNYDFD----E 232 (283)
T ss_dssp ECC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH--HTTCCCCC----H
T ss_pred eccCCCc--ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHh--HhcccCCc----c
Confidence 6544322 23456899999999999889999999999999999999999999766543322211 00000000 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 645 NPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 645 ~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
...... ...+.+++.+||+.||++||++.|+++
T Consensus 233 ~~~~~~----~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 233 EYFSNT----SELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp HHHTTC----CHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred hhcccC----CHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 000111 234889999999999999999999987
No 167
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=3.4e-40 Score=352.50 Aligned_cols=263 Identities=22% Similarity=0.359 Sum_probs=200.7
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCc--ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSK--QGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
.++|+..+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|+.++++++||||+++++++.+++..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 35788999999999999999995 4689999999865432 23456789999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
||+++++|.+++.. ...+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++.......
T Consensus 104 e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 179 (331)
T 4aaa_A 104 EFVDHTILDDLELF-PNGLDYQVVQKYLFQIINGIGFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE 179 (331)
T ss_dssp ECCSEEHHHHHHHS-TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred ecCCcchHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHHCC---EEccCcChheEEEcCCCcEEEEeCCCceeecCCcc
Confidence 99999999887653 347999999999999999999999997 99999999999999999999999999986544322
Q ss_pred ceeeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHH------------hcCcc
Q 004400 572 HISTRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLK------------EQGKL 638 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~------------~~~~~ 638 (756)
......||+.|+|||++.+. .++.++|||||||++|||++|+.||................ .....
T Consensus 180 -~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (331)
T 4aaa_A 180 -VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVF 258 (331)
T ss_dssp -----CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGG
T ss_pred -ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhcccc
Confidence 22345689999999999875 78999999999999999999999997665443322211110 00000
Q ss_pred ccccccCCCCCCC-----HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 639 MELVDTNPGSNFD-----KEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 639 ~~~~~~~~~~~~~-----~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.....+......+ +.....+.+++.+||+.||++|||+.|+++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 307 (331)
T 4aaa_A 259 AGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH 307 (331)
T ss_dssp TTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred ccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence 0000000000001 1123458999999999999999999998763
No 168
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.5e-41 Score=358.06 Aligned_cols=259 Identities=28% Similarity=0.371 Sum_probs=188.7
Q ss_pred cCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHh--CCCCceeeEeeEEEeCC----eEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISA--LQHPNLVKLYGCCIEGN----QLLL 489 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~~~l 489 (756)
++|...+.||+|+||.||+|+.. ++.||||++... ....+.+|.+++.. ++||||+++++++.+.. ..++
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l 78 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 78 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEEE
T ss_pred ceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeEE
Confidence 57899999999999999999875 889999998643 34667888888887 79999999999998876 8899
Q ss_pred EEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH--------cCCCCCeEcCCCCCCceEecCCCCEEEccCC
Q 004400 490 IYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLH--------GESRIKVVHRDIKATNVLLDKDLNSKISDFG 561 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH--------~~g~~~iiH~Dikp~Nill~~~~~~kl~DFG 561 (756)
||||+++|+|.+++... .+++..+..++.|++.||+||| +.+ |+||||||+|||++.++.+||+|||
T Consensus 79 v~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~Nil~~~~~~~kl~DFg 153 (303)
T 3gxj_A 79 VSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA---IAHRDLKSKNILVKKNGTCCIADLG 153 (303)
T ss_dssp EEECCTTCCHHHHHHHC--CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-BCCCC
T ss_pred EEeccCCCCHHHHHhcc--CcchHHHHHHHHHHHHHHHHHHHHHhhhccCCC---EeeCcCCHHHeEECCCCCEEEeecC
Confidence 99999999999999654 6888999999999999999999 765 9999999999999999999999999
Q ss_pred ccccCcccCcce---eeccccCccCCchHhhhcC------CCCcccchhhHHHHHHHHHhC----------CCCCCccch
Q 004400 562 LAKLDEEENTHI---STRVAGTIGYMAPEYAMRG------HLTEKADVYSFGIVALEIVSG----------RSNVTKEDM 622 (756)
Q Consensus 562 la~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~slGv~l~elltg----------~~p~~~~~~ 622 (756)
+++......... .....||+.|+|||++.+. .++.++|||||||++|||++| +.||.....
T Consensus 154 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~~ 233 (303)
T 3gxj_A 154 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP 233 (303)
T ss_dssp C-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC
T ss_pred cceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccCC
Confidence 997654433321 2334799999999999775 344689999999999999999 566633211
Q ss_pred hh--HHHHHHHHHhcCccccccccCCCCC-CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 623 FY--LLDWALVLKEQGKLMELVDTNPGSN-FDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 623 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.. ............. .+..... ........+.+++.+||+.||++|||+.+|++.|+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~ 297 (303)
T 3gxj_A 234 SDPSVEEMRKVVCEQKL-----RPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp -CCCCC-CHHHHTTSCC-----CCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CC
T ss_pred CCccHHHHHHHHHHhhc-----CCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhh
Confidence 00 0000011111111 1111111 122556679999999999999999999999999997654
No 169
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=3.8e-40 Score=342.99 Aligned_cols=250 Identities=29% Similarity=0.445 Sum_probs=198.7
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeC-CeEEEEEEe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEG-NQLLLIYEY 493 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~lV~e~ 493 (756)
.++|+..+.||+|+||.||+|... |+.||||.+.... ..+.+.+|++++++++||||+++++++.+. +..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 467889999999999999999874 8899999997542 457899999999999999999999997654 478999999
Q ss_pred cCCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcc
Q 004400 494 LENNSLARALFEHRL-KLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTH 572 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~-~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~ 572 (756)
+++|+|.+++..... .+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++......
T Consensus 97 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~-- 171 (278)
T 1byg_A 97 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-- 171 (278)
T ss_dssp CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred CCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCCcceEEEeCCCcEEEeeccccccccccc--
Confidence 999999999975432 3889999999999999999999997 9999999999999999999999999997544321
Q ss_pred eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCC
Q 004400 573 ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFD 651 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (756)
....+++.|+|||.+.+..++.++||||||+++|||++ |+.||........... . ..+... .....++
T Consensus 172 --~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~---~-~~~~~~-----~~~~~~~ 240 (278)
T 1byg_A 172 --DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPR---V-EKGYKM-----DAPDGCP 240 (278)
T ss_dssp ------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHH---H-TTTCCC-----CCCTTCC
T ss_pred --cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH---H-hcCCCC-----CCcccCC
Confidence 22457889999999999999999999999999999998 9999966544332211 1 111111 1112223
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 652 KEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 652 ~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
..+.+++.+||+.||++||++.|+++.|+++.
T Consensus 241 ----~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~ 272 (278)
T 1byg_A 241 ----PAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK 272 (278)
T ss_dssp ----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCChhhCCCHHHHHHHHHHHH
Confidence 34889999999999999999999999998653
No 170
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=340.11 Aligned_cols=252 Identities=27% Similarity=0.375 Sum_probs=200.0
Q ss_pred cCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEec
Q 004400 416 NNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYL 494 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 494 (756)
++|.....||+|+||.||+|. ..+++.||||.+........+.+.+|+.+++.++||||+++++++.+.+..++||||+
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 101 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV 101 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence 345566799999999999999 4678999999997765555678999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC-CCCEEEccCCccccCcccCc
Q 004400 495 ENNSLARALFEHR--LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK-DLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 495 ~~gsL~~~l~~~~--~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~-~~~~kl~DFGla~~~~~~~~ 571 (756)
++++|.+++.... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++. ++.+||+|||+++.......
T Consensus 102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~ 178 (295)
T 2clq_A 102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP 178 (295)
T ss_dssp SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCC---EEccCCChhhEEEECCCCCEEEeecccccccCCCCC
Confidence 9999999998653 35678899999999999999999996 999999999999987 89999999999986543222
Q ss_pred ceeeccccCccCCchHhhhcCC--CCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGH--LTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
......||+.|+|||++.+.. ++.++||||||+++|||++|+.||..........+..... ... ......
T Consensus 179 -~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~--~~~-----~~~~~~ 250 (295)
T 2clq_A 179 -CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF--KVH-----PEIPES 250 (295)
T ss_dssp ---CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHH--CCC-----CCCCTT
T ss_pred -cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccc--ccc-----cccccc
Confidence 123457899999999997653 8999999999999999999999996543222111111110 111 111122
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
++ ..+.+++.+||+.||++||++.++++.
T Consensus 251 ~~----~~~~~li~~~l~~dp~~Rps~~~ll~~ 279 (295)
T 2clq_A 251 MS----AEAKAFILKCFEPDPDKRACANDLLVD 279 (295)
T ss_dssp SC----HHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred CC----HHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 23 348899999999999999999999763
No 171
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=1.6e-39 Score=351.89 Aligned_cols=256 Identities=20% Similarity=0.347 Sum_probs=206.6
Q ss_pred HHHhhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCc--------ccHHHHHHHHHHHHhC-CCCceeeEeeE
Q 004400 411 IKAATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSK--------QGNREFINEIGMISAL-QHPNLVKLYGC 480 (756)
Q Consensus 411 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l-~h~niv~l~~~ 480 (756)
.....++|...+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|+.+++++ +||||++++++
T Consensus 89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 168 (365)
T 2y7j_A 89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDS 168 (365)
T ss_dssp HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence 344567899999999999999999996 4799999999865431 1135678899999999 79999999999
Q ss_pred EEeCCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccC
Q 004400 481 CIEGNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDF 560 (756)
Q Consensus 481 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DF 560 (756)
+......++||||+++|+|.+++... ..+++..+..++.||+.||+|||+.| |+||||||+||+++.++.+||+||
T Consensus 169 ~~~~~~~~lv~e~~~g~~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~~LH~~g---i~H~Dlkp~NIl~~~~~~ikl~Df 244 (365)
T 2y7j_A 169 YESSSFMFLVFDLMRKGELFDYLTEK-VALSEKETRSIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIRLSDF 244 (365)
T ss_dssp EEBSSEEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCC
T ss_pred EeeCCEEEEEEEeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEEEec
Confidence 99999999999999999999999754 47999999999999999999999997 999999999999999999999999
Q ss_pred CccccCcccCcceeeccccCccCCchHhhhc------CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHh
Q 004400 561 GLAKLDEEENTHISTRVAGTIGYMAPEYAMR------GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKE 634 (756)
Q Consensus 561 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 634 (756)
|++........ .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||............ ..
T Consensus 245 G~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i---~~ 319 (365)
T 2y7j_A 245 GFSCHLEPGEK--LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMI---ME 319 (365)
T ss_dssp TTCEECCTTCC--BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH
T ss_pred CcccccCCCcc--cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHH---Hh
Confidence 99986554322 234679999999999874 35888999999999999999999999766544332211 11
Q ss_pred cCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 635 QGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
......... .... ...+.+++.+|++.||++||++.|+++.
T Consensus 320 ~~~~~~~~~---~~~~----~~~~~~li~~~L~~dP~~Rps~~ell~h 360 (365)
T 2y7j_A 320 GQYQFSSPE---WDDR----SSTVKDLISRLLQVDPEARLTAEQALQH 360 (365)
T ss_dssp TCCCCCHHH---HSSS----CHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred CCCCCCCcc---cccC----CHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 110000000 0111 2348899999999999999999999873
No 172
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=2.5e-40 Score=346.62 Aligned_cols=256 Identities=25% Similarity=0.416 Sum_probs=199.3
Q ss_pred hcCccccCcccCCCCccEEEeecc--CCc--EEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLA--DGT--AIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~--~~~--~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 487 (756)
.++|+..+.||+|+||.||+|++. +++ .||||+++.. .....+.+.+|++++++++||||+++++++.++. .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 357889999999999999999853 333 6899998754 2234567899999999999999999999998765 8
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
++||||+++|+|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 172 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALP 172 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEEcCCCCEEEcccccccccc
Confidence 8999999999999999876667999999999999999999999996 9999999999999999999999999998765
Q ss_pred ccCcce--eeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCcccccccc
Q 004400 568 EENTHI--STRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDT 644 (756)
Q Consensus 568 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (756)
...... .....+|+.|+|||++.+..++.++||||||+++|||++ |+.||...+....... .........
T Consensus 173 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~---~~~~~~~~~---- 245 (291)
T 1u46_A 173 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHK---IDKEGERLP---- 245 (291)
T ss_dssp C-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHH---HHTSCCCCC----
T ss_pred ccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHH---HHccCCCCC----
Confidence 433221 233567889999999998889999999999999999999 9999976654433221 111111111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccC
Q 004400 645 NPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECG 686 (756)
Q Consensus 645 ~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~ 686 (756)
....++ ..+.+++.+||+.||++||++.++++.|++.
T Consensus 246 -~~~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 282 (291)
T 1u46_A 246 -RPEDCP----QDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 282 (291)
T ss_dssp -CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -CCcCcC----HHHHHHHHHHccCCcccCcCHHHHHHHHHHh
Confidence 111223 3488999999999999999999999999864
No 173
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=8.5e-40 Score=367.98 Aligned_cols=248 Identities=24% Similarity=0.338 Sum_probs=203.0
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC---cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS---KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 489 (756)
..++|...+.||+|+||.||+|+. .+|+.||+|++.... ......+.+|+.++++++||||+++++++.+.+..|+
T Consensus 183 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l 262 (543)
T 3c4z_A 183 GEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCL 262 (543)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred ChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEE
Confidence 347899999999999999999995 579999999996532 2345678999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 490 IYEYLENNSLARALFEH---RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~---~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
||||+++|+|.+++... ...+++..+..++.||+.||+|||++| |+||||||+|||++.++.+||+|||+++..
T Consensus 263 VmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g---IvHrDLKP~NILl~~~g~vkL~DFGla~~~ 339 (543)
T 3c4z_A 263 VMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGLAVEL 339 (543)
T ss_dssp EECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcC---CcccCCChHHEEEeCCCCEEEeecceeeec
Confidence 99999999999999753 346999999999999999999999997 999999999999999999999999999865
Q ss_pred cccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhh-HHHHHHHHHhcCccccccccC
Q 004400 567 EEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFY-LLDWALVLKEQGKLMELVDTN 645 (756)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 645 (756)
...... ....+||+.|+|||++.+..++.++|||||||++|||++|+.||....... ........... .. .
T Consensus 340 ~~~~~~-~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~-~~-~----- 411 (543)
T 3c4z_A 340 KAGQTK-TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQ-AV-T----- 411 (543)
T ss_dssp CTTCCC-BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHC-CC-C-----
T ss_pred cCCCcc-cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhc-cc-C-----
Confidence 543222 234589999999999999999999999999999999999999996543211 11111111111 00 0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCCCCH
Q 004400 646 PGSNFDKEQVMVMINVALLCANASPTIRPSM 676 (756)
Q Consensus 646 ~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~ 676 (756)
....++ ..+.+++.+|++.||++||++
T Consensus 412 ~p~~~s----~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 412 YPDKFS----PASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp CCTTSC----HHHHHHHHHHSCSSGGGSCCC
T ss_pred CCcccC----HHHHHHHHHhccCCHhHCCCC
Confidence 111223 348899999999999999976
No 174
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=3.2e-40 Score=381.11 Aligned_cols=247 Identities=27% Similarity=0.377 Sum_probs=199.0
Q ss_pred CcccCCCCccEEEeec---cCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEecCC
Q 004400 422 NNIGEGGFGPVYKGLL---ADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLEN 496 (756)
Q Consensus 422 ~~lg~G~~g~Vy~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~ 496 (756)
+.||+|+||.||+|.+ ..++.||||+++... ....+++.+|++++++++|||||+++++|.+ +..++|||||++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 4799999999999964 346789999997643 2335789999999999999999999999964 568999999999
Q ss_pred CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcc--ee
Q 004400 497 NSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTH--IS 574 (756)
Q Consensus 497 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~--~~ 574 (756)
|+|.+++... ..+++..+..++.||+.||+|||+++ ||||||||+|||++.++.+||+|||+++........ ..
T Consensus 454 g~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~---iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~ 529 (635)
T 4fl3_A 454 GPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 529 (635)
T ss_dssp EEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCTTHHHHTTC--------
T ss_pred CCHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHHHHCC---EeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccc
Confidence 9999999754 47999999999999999999999997 999999999999999999999999999866543322 22
Q ss_pred eccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHH
Q 004400 575 TRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKE 653 (756)
Q Consensus 575 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (756)
....||+.|+|||++.+..++.++|||||||++|||++ |+.||........... ...+...... ..++
T Consensus 530 ~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~----i~~~~~~~~p-----~~~~-- 598 (635)
T 4fl3_A 530 THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAM----LEKGERMGCP-----AGCP-- 598 (635)
T ss_dssp -----CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHH----HHTTCCCCCC-----TTCC--
T ss_pred cCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH----HHcCCCCCCC-----CCCC--
Confidence 33457889999999999999999999999999999998 9999977655433221 1122211111 1223
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccC
Q 004400 654 QVMVMINVALLCANASPTIRPSMSSVLRMLECG 686 (756)
Q Consensus 654 ~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~ 686 (756)
..+.+++.+||+.||++||++.+|++.|+.+
T Consensus 599 --~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 599 --REMYDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp --HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 3488999999999999999999999999854
No 175
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=6.3e-40 Score=345.63 Aligned_cols=254 Identities=24% Similarity=0.420 Sum_probs=202.4
Q ss_pred hhcCccccCcccCCCCccEEEeecc-CCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
..++|+..+.||+|+||.||+|... +++.||+|.+........+.+.+|+++++.++||||+++++++.+++..++|||
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 3468899999999999999999954 689999999987666667889999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTH 572 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~ 572 (756)
|+++++|.+++......+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||++....... .
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~ 172 (302)
T 2j7t_A 97 FCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKR---IIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTL-Q 172 (302)
T ss_dssp CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHH-H
T ss_pred eCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEECCCCCEEEEECCCCccccccc-c
Confidence 99999999999876678999999999999999999999997 9999999999999999999999999976432211 1
Q ss_pred eeeccccCccCCchHhhh-----cCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 573 ISTRVAGTIGYMAPEYAM-----RGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
......||+.|+|||++. ...++.++||||||+++|||++|+.||...+...... ...... .....
T Consensus 173 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~---~~~~~~-~~~~~----- 243 (302)
T 2j7t_A 173 KRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLL---KIAKSD-PPTLL----- 243 (302)
T ss_dssp C-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH---HHHHSC-CCCCS-----
T ss_pred ccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHH---HHhccC-CcccC-----
Confidence 123356899999999984 5678999999999999999999999997655433221 111111 11110
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.+......+.+++.+||+.||++|||+.++++.
T Consensus 244 --~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 276 (302)
T 2j7t_A 244 --TPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH 276 (302)
T ss_dssp --SGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred --CccccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 011122348899999999999999999998763
No 176
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=8.6e-40 Score=341.23 Aligned_cols=248 Identities=26% Similarity=0.421 Sum_probs=204.8
Q ss_pred hhcCccccCcccCCCCccEEEeecc-CCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEe---------
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIE--------- 483 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--------- 483 (756)
..++|+..+.||+|+||.||+|... +++.||+|.+.... ..+.+|++++++++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 3467899999999999999999954 79999999986543 356789999999999999999999865
Q ss_pred -------CCeEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCE
Q 004400 484 -------GNQLLLIYEYLENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNS 555 (756)
Q Consensus 484 -------~~~~~lV~e~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~ 555 (756)
....++||||+++|+|.+++... ...+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~ 161 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKK---LINRDLKPSNIFLVDTKQV 161 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHEEEcCCCCE
Confidence 45589999999999999999753 357999999999999999999999996 9999999999999999999
Q ss_pred EEccCCccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhc
Q 004400 556 KISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQ 635 (756)
Q Consensus 556 kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 635 (756)
||+|||+++....... .....||+.|+|||.+.+..++.++||||||+++|||++|..|+..... +.... ..
T Consensus 162 kl~Dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~-----~~~~~-~~ 233 (284)
T 2a19_B 162 KIGDFGLVTSLKNDGK--RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSK-----FFTDL-RD 233 (284)
T ss_dssp EECCCTTCEESSCCSC--CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHH-----HHHHH-HT
T ss_pred EECcchhheecccccc--ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHH-----HHHHh-hc
Confidence 9999999986654322 2345699999999999999999999999999999999999988732211 11111 11
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 636 GKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.. ....++. .+.+++.+||+.||++||++.|+++.|+.+..
T Consensus 234 ~~--------~~~~~~~----~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~ 274 (284)
T 2a19_B 234 GI--------ISDIFDK----KEKTLLQKLLSKKPEDRPNTSEILRTLTVWKK 274 (284)
T ss_dssp TC--------CCTTSCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC
T ss_pred cc--------ccccCCH----HHHHHHHHHccCChhhCcCHHHHHHHHHHHhh
Confidence 11 1122333 37899999999999999999999999986644
No 177
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-39 Score=353.09 Aligned_cols=261 Identities=21% Similarity=0.335 Sum_probs=199.1
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC------
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEGN------ 485 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 485 (756)
.++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+++++.++||||+++++++..++
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 35788999999999999999994 67999999998653 2233467889999999999999999999998763
Q ss_pred eEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCcccc
Q 004400 486 QLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKL 565 (756)
Q Consensus 486 ~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~ 565 (756)
..|+||||+ +++|.+++.. ..+++..+..++.||++||+|||+.| |+||||||+||+++.++.+||+|||+++.
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 177 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQ 177 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred eEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCHHHEEEcCCCCEEEEeeecccc
Confidence 469999999 8899999875 36899999999999999999999997 99999999999999999999999999986
Q ss_pred CcccCcceeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc-------
Q 004400 566 DEEENTHISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK------- 637 (756)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~------- 637 (756)
.... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.+................
T Consensus 178 ~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~ 253 (367)
T 1cm8_A 178 ADSE----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRL 253 (367)
T ss_dssp CCSS----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTC
T ss_pred cccc----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHh
Confidence 5432 234578999999999987 6799999999999999999999999977665443322211111000
Q ss_pred -----------cccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH--hccC
Q 004400 638 -----------LMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM--LECG 686 (756)
Q Consensus 638 -----------~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~--L~~~ 686 (756)
....... ............+.+++.+|++.||++|||+.|+++. ++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~ 314 (367)
T 1cm8_A 254 QSDEAKNYMKGLPELEKK-DFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESL 314 (367)
T ss_dssp SCHHHHHHHHHSCCCCCC-CGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTT
T ss_pred hhHHHHHHHHhCCCCCCC-CHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhh
Confidence 0000000 0000111123348899999999999999999999874 4443
No 178
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=7.7e-40 Score=345.40 Aligned_cols=251 Identities=22% Similarity=0.354 Sum_probs=204.1
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEEe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEY 493 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 493 (756)
.++|...+.||+|+||.||+|+. .+|+.||+|.+..........+.+|+.++++++||||+++++++.+++..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL 87 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence 45788999999999999999995 57999999999765444556789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe---cCCCCEEEccCCccccCcccC
Q 004400 494 LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL---DKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 494 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill---~~~~~~kl~DFGla~~~~~~~ 570 (756)
+++|+|.+++.... .+++..+..++.|++.||+|||+.| |+||||||+||++ +.++.+||+|||+++......
T Consensus 88 ~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~ 163 (304)
T 2jam_A 88 VSGGELFDRILERG-VYTEKDASLVIQQVLSAVKYLHENG---IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGI 163 (304)
T ss_dssp CCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBT
T ss_pred CCCccHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCc
Confidence 99999999987543 6899999999999999999999997 9999999999999 788899999999997644321
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
.....||+.|+|||.+.+..++.++||||||+++|||++|+.||........... ... +.. .. ........
T Consensus 164 ---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~---i~~-~~~-~~-~~~~~~~~ 234 (304)
T 2jam_A 164 ---MSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEK---IKE-GYY-EF-ESPFWDDI 234 (304)
T ss_dssp ---THHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH---HHH-CCC-CC-CTTTTTTS
T ss_pred ---cccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---HHc-CCC-CC-CccccccC
Confidence 2335689999999999988999999999999999999999999976654333221 111 110 00 01111122
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
+ ..+.+++.+|++.||++||++.|+++.
T Consensus 235 ~----~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (304)
T 2jam_A 235 S----ESAKDFICHLLEKDPNERYTCEKALSH 262 (304)
T ss_dssp C----HHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred C----HHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 3 348899999999999999999999863
No 179
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=4.9e-40 Score=355.95 Aligned_cols=269 Identities=23% Similarity=0.362 Sum_probs=204.4
Q ss_pred hhhHHHhhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcc-----------cHHHHHHHHHHHHhCCCCceee
Q 004400 408 YLQIKAATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQ-----------GNREFINEIGMISALQHPNLVK 476 (756)
Q Consensus 408 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv~ 476 (756)
..++....++|...+.||+|+||.||+|...+|+.||||++...... ..+.+.+|++++++++||||++
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~ 93 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG 93 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence 45677888999999999999999999999888999999998653221 1267899999999999999999
Q ss_pred EeeEEEeC-----CeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC
Q 004400 477 LYGCCIEG-----NQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK 551 (756)
Q Consensus 477 l~~~~~~~-----~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~ 551 (756)
+++++... ...++||||++ |+|.+++......+++..+..++.||+.||+|||+.+ |+||||||+||+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~ 169 (362)
T 3pg1_A 94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAG---VVHRDLHPGNILLAD 169 (362)
T ss_dssp CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECT
T ss_pred eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCc---CEecCCChHHEEEcC
Confidence 99999653 36899999998 6888888876668999999999999999999999997 999999999999999
Q ss_pred CCCEEEccCCccccCcccCcceeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHH
Q 004400 552 DLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWAL 630 (756)
Q Consensus 552 ~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~ 630 (756)
++.+||+|||+++....... .....||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.............
T Consensus 170 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~ 247 (362)
T 3pg1_A 170 NNDITICDFNLAREDTADAN--KTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIV 247 (362)
T ss_dssp TCCEEECCTTC-----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH
T ss_pred CCCEEEEecCcccccccccc--cceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 99999999999975433222 234578999999999987 679999999999999999999999997766544333222
Q ss_pred HHHhcCcccc---------------ccccCCCCC---CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 631 VLKEQGKLME---------------LVDTNPGSN---FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 631 ~~~~~~~~~~---------------~~~~~~~~~---~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.......... .....+... ..+.....+.+++.+|++.||++|||+.|+++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 317 (362)
T 3pg1_A 248 EVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH 317 (362)
T ss_dssp HHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence 1111111000 000000000 011122358899999999999999999999864
No 180
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=8.4e-40 Score=350.27 Aligned_cols=264 Identities=27% Similarity=0.402 Sum_probs=198.4
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHH--HHhCCCCceeeEeeEEEe-----CCeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGM--ISALQHPNLVKLYGCCIE-----GNQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~l~~~~~~-----~~~~ 487 (756)
.++|...+.||+|+||.||+|+. +++.||||++... ....+..|.++ +..++||||+++++++.. ....
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA---NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc---chhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 46889999999999999999976 6899999998643 23445555555 445899999999987653 2367
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcC---------CCCCeEcCCCCCCceEecCCCCEEEc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGE---------SRIKVVHRDIKATNVLLDKDLNSKIS 558 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~---------g~~~iiH~Dikp~Nill~~~~~~kl~ 558 (756)
++||||+++|+|.+++... ..++..+..++.||+.||+|||+. + |+||||||+|||++.++.+||+
T Consensus 88 ~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~---ivH~Dikp~Nill~~~~~~kL~ 162 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLH--TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPA---ISHRDLNSRNVLVKNDGTCVIS 162 (336)
T ss_dssp EEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCC---EECSSCSGGGEEECTTSCEEEC
T ss_pred EEEEecCCCCcHHHHHhhc--ccchhHHHHHHHHHHHHHHHHHhhhccccccccc---eeecccccceEEEcCCCcEEEe
Confidence 8999999999999999754 458999999999999999999988 6 9999999999999999999999
Q ss_pred cCCccccCcccC-------cceeeccccCccCCchHhhhc-------CCCCcccchhhHHHHHHHHHhCCCCCCccchhh
Q 004400 559 DFGLAKLDEEEN-------THISTRVAGTIGYMAPEYAMR-------GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFY 624 (756)
Q Consensus 559 DFGla~~~~~~~-------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~ 624 (756)
|||+++...... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.......
T Consensus 163 DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~ 242 (336)
T 3g2f_A 163 DFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVP 242 (336)
T ss_dssp CCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCC
T ss_pred eccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchh
Confidence 999998654322 112234579999999999976 456779999999999999999988774332110
Q ss_pred H---------------HHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCccc
Q 004400 625 L---------------LDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDV 689 (756)
Q Consensus 625 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~ 689 (756)
. .++............+... ..........+.+++.+||+.||++|||+.|+++.|+++...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~ 319 (336)
T 3g2f_A 243 EYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEA---WKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMI 319 (336)
T ss_dssp CCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTT---CCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHhhhcccCCCchHHHHHhhhcccccCCCCCcc---cccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHH
Confidence 0 0011111111111111111 111223555799999999999999999999999999977554
Q ss_pred c
Q 004400 690 L 690 (756)
Q Consensus 690 ~ 690 (756)
.
T Consensus 320 ~ 320 (336)
T 3g2f_A 320 W 320 (336)
T ss_dssp C
T ss_pred H
Confidence 3
No 181
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=2.8e-39 Score=339.37 Aligned_cols=249 Identities=23% Similarity=0.350 Sum_probs=205.5
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC---cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS---KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 46788999999999999999995 468899999986542 23456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++++|.+++... ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++......
T Consensus 94 ~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 169 (294)
T 2rku_A 94 LELCRRRSLLELHKRR-KALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 169 (294)
T ss_dssp EECCTTCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEcCCCCEEEEeccCceecccCc
Confidence 9999999999988654 47999999999999999999999997 9999999999999999999999999998654332
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
.. .....||+.|+|||.+.+..++.++||||||+++|||++|+.||........... ... ... . .....
T Consensus 170 ~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~---~~~-~~~-~-----~~~~~ 238 (294)
T 2rku_A 170 ER-KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLR---IKK-NEY-S-----IPKHI 238 (294)
T ss_dssp CC-BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHH---HHT-TCC-C-----CCTTS
T ss_pred cc-cccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH---Hhh-ccC-C-----Ccccc
Confidence 22 2345799999999999988899999999999999999999999976554332211 111 110 0 11122
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
+ ..+.+++.+||+.||++||++.|+++.
T Consensus 239 ~----~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 239 N----PVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp C----HHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred C----HHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 2 348899999999999999999998763
No 182
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=1.2e-39 Score=352.71 Aligned_cols=261 Identities=21% Similarity=0.364 Sum_probs=203.9
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc-CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK-SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
.++|...+.||+|+||.||+|.. .+++.||+|++... .....+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 46899999999999999999995 47899999998764 23345678999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGE-SRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~-g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
|+++|+|.+++.... .+++..+..++.|++.||+|||+. | |+||||||+||+++.++.+||+|||+++.....
T Consensus 112 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 185 (360)
T 3eqc_A 112 HMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-- 185 (360)
T ss_dssp CCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--
T ss_pred CCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHhCC---EEcCCccHHHEEECCCCCEEEEECCCCcccccc--
Confidence 999999999997553 689999999999999999999985 5 999999999999999999999999999754322
Q ss_pred ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhc----------------
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQ---------------- 635 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~---------------- 635 (756)
......||+.|+|||++.+..++.++|||||||++|||++|+.||...+..............
T Consensus 186 -~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (360)
T 3eqc_A 186 -MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPL 264 (360)
T ss_dssp -C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC---------------------
T ss_pred -cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcc
Confidence 123457999999999999999999999999999999999999999665433221110000000
Q ss_pred ----------Ccccc----ccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 636 ----------GKLME----LVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 636 ----------~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
....+ .................+.+++.+||+.||++|||+.|+++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 325 (360)
T 3eqc_A 265 NKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH 325 (360)
T ss_dssp ---------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred cccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence 00000 000000000011123358899999999999999999999764
No 183
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=1.2e-39 Score=339.22 Aligned_cols=257 Identities=27% Similarity=0.399 Sum_probs=205.2
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEe--CCeEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIE--GNQLLL 489 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~l 489 (756)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.++++++||||+++++++.+ +...++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 46888999999999999999995 578999999986542 3345678999999999999999999998865 578999
Q ss_pred EEEecCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHcCC--CCCeEcCCCCCCceEecCCCCEEEccCCccc
Q 004400 490 IYEYLENNSLARALFEH---RLKLDWPTRRRICLGIARGLAYLHGES--RIKVVHRDIKATNVLLDKDLNSKISDFGLAK 564 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~---~~~l~~~~~~~i~~~ia~~L~~LH~~g--~~~iiH~Dikp~Nill~~~~~~kl~DFGla~ 564 (756)
||||+++|+|.+++... ...+++..+..++.|++.||+|||+.+ ..+|+||||||+||+++.++.+||+|||+++
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~ 164 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR 164 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence 99999999999999743 345999999999999999999999874 1239999999999999999999999999998
Q ss_pred cCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccccccc
Q 004400 565 LDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDT 644 (756)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (756)
........ .....||+.|+|||.+.+..++.++||||||+++|||++|+.||...+....... . ..+.....
T Consensus 165 ~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~---i-~~~~~~~~--- 236 (279)
T 2w5a_A 165 ILNHDTSF-AKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGK---I-REGKFRRI--- 236 (279)
T ss_dssp HC---CHH-HHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH---H-HHTCCCCC---
T ss_pred eecccccc-ccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHH---H-hhcccccC---
Confidence 65443221 2235689999999999998999999999999999999999999976654333221 1 11111111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhcc
Q 004400 645 NPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLEC 685 (756)
Q Consensus 645 ~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~ 685 (756)
...++ ..+.+++.+||+.||++||++.||++.+..
T Consensus 237 --~~~~~----~~l~~li~~~l~~~p~~Rps~~~ll~~~~~ 271 (279)
T 2w5a_A 237 --PYRYS----DELNEIITRMLNLKDYHRPSVEEILENPLI 271 (279)
T ss_dssp --CTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred --CcccC----HHHHHHHHHHcCCCcccCCCHHHHHhChhh
Confidence 11223 348899999999999999999999988764
No 184
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=1.6e-39 Score=365.81 Aligned_cols=251 Identities=23% Similarity=0.383 Sum_probs=204.4
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
.++|...+.||+|+||.||+|+. .+++.||||++... .......+.+|++++++++|||||++++++.++...++||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 100 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG 100 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence 45788999999999999999995 57899999998653 2334578899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEec---CCCCEEEccCCccccCcc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLD---KDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~---~~~~~kl~DFGla~~~~~ 568 (756)
||+.+|+|.+.+... ..+++..+..++.||+.||+|||+.| |+||||||+|||++ .++.+||+|||+++....
T Consensus 101 e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~ 176 (486)
T 3mwu_A 101 ELYTGGELFDEIIKR-KRFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ 176 (486)
T ss_dssp CCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCC
T ss_pred EcCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEEECCcCeECCC
Confidence 999999999998755 47999999999999999999999997 99999999999995 456799999999986544
Q ss_pred cCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCC
Q 004400 569 ENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGS 648 (756)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (756)
... .....||+.|+|||++.+ .++.++||||+||++|+|++|+.||...+........ .......... ...
T Consensus 177 ~~~--~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i---~~~~~~~~~~---~~~ 247 (486)
T 3mwu_A 177 NTK--MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRV---ETGKYAFDLP---QWR 247 (486)
T ss_dssp C------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HHTCCCSCSG---GGG
T ss_pred CCc--cCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---HhCCCCCCCc---ccC
Confidence 322 234579999999999865 6999999999999999999999999776654443321 1111100000 011
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 649 NFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 649 ~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..+ ..+.+++.+||+.||++|||+.|+++.
T Consensus 248 ~~s----~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 248 TIS----DDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp GSC----HHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred CCC----HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 122 348899999999999999999999874
No 185
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=3.2e-39 Score=337.11 Aligned_cols=246 Identities=22% Similarity=0.349 Sum_probs=204.5
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC---cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS---KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|.. .+++.||+|.+.... ......+.+|++++++++||||+++++++.+++..++|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 36788999999999999999995 467899999986531 22346789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++|+|.+++.... .+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||++.......
T Consensus 93 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~ 168 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR 168 (284)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTCCEEECCCTTCEECSSSC
T ss_pred EEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEEcCCCCEEEecccccccCcccc
Confidence 99999999999997553 6899999999999999999999986 9999999999999999999999999987544322
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
.....|++.|+|||.+.+..++.++||||||+++|||++|+.||........... ... .. ......+
T Consensus 169 ---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~---~~~-~~------~~~~~~~ 235 (284)
T 2vgo_A 169 ---RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRR---IVN-VD------LKFPPFL 235 (284)
T ss_dssp ---BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHH---HHT-TC------CCCCTTS
T ss_pred ---cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHH---Hhc-cc------cCCCCcC
Confidence 2345789999999999998999999999999999999999999976544332211 111 00 0111122
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
+ ..+.+++.+|++.||.+||++.|+++
T Consensus 236 ~----~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 236 S----DGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp C----HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred C----HHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 2 34889999999999999999999976
No 186
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=2.2e-39 Score=346.72 Aligned_cols=248 Identities=23% Similarity=0.354 Sum_probs=205.7
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc---CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK---SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|.. .+++.||+|++... .....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 45788899999999999999995 46889999998654 223456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++++|.+++... ..+++..+..++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++......
T Consensus 120 ~e~~~~~~L~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 195 (335)
T 2owb_A 120 LELCRRRSLLELHKRR-KALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 195 (335)
T ss_dssp ECCCTTCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC---CEecCCCchhEEEcCCCCEEEeeccCceecccCc
Confidence 9999999999988654 47999999999999999999999997 9999999999999999999999999998654332
Q ss_pred cceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
. ......||+.|+|||++.+..++.++||||||+++|||++|+.||........... .... .. . ....+
T Consensus 196 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~---~~~~-~~-~-----~~~~~ 264 (335)
T 2owb_A 196 E-RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLR---IKKN-EY-S-----IPKHI 264 (335)
T ss_dssp C-CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHH---HHHT-CC-C-----CCTTS
T ss_pred c-cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHH---HhcC-CC-C-----CCccC
Confidence 2 22345799999999999998999999999999999999999999976554332211 1111 10 0 11122
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
+ ..+.+++.+||+.||++||++.|+++
T Consensus 265 ~----~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 265 N----PVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp C----HHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred C----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence 3 34889999999999999999999876
No 187
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.4e-39 Score=342.08 Aligned_cols=251 Identities=27% Similarity=0.406 Sum_probs=202.4
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
..++|+..+.||+|+||.||+|.. .+|+.||+|.+.... ..+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 456899999999999999999995 468999999986543 34778999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTH 572 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~ 572 (756)
|+++|+|.+++......+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||++........
T Consensus 105 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~- 180 (314)
T 3com_A 105 YCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMR---KIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA- 180 (314)
T ss_dssp CCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS-
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc-
Confidence 99999999999766678999999999999999999999997 99999999999999999999999999976544322
Q ss_pred eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCH
Q 004400 573 ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDK 652 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (756)
......||+.|+|||.+.+..++.++||||||+++|+|++|+.||.......... .... ...... ..+.
T Consensus 181 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~---~~~~-~~~~~~-------~~~~ 249 (314)
T 3com_A 181 KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIF---MIPT-NPPPTF-------RKPE 249 (314)
T ss_dssp CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH---HHHH-SCCCCC-------SSGG
T ss_pred ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHH---HHhc-CCCccc-------CCcc
Confidence 2234578999999999998899999999999999999999999996654332211 1111 111010 0011
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 653 EQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 653 ~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
.....+.+++.+||+.||.+|||+.++++
T Consensus 250 ~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 250 LWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp GSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 11234889999999999999999999976
No 188
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.3e-39 Score=355.33 Aligned_cols=260 Identities=21% Similarity=0.301 Sum_probs=198.2
Q ss_pred HHhhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEe-------
Q 004400 412 KAATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIE------- 483 (756)
Q Consensus 412 ~~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------- 483 (756)
....++|...+.||+|+||.||+|+ ..+|+.||||++..... ...+|+++++.++|||||+++++|..
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 3456789999999999999999998 56899999999865422 23479999999999999999999854
Q ss_pred -------------------------------CCeEEEEEEecCCCCHHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHH
Q 004400 484 -------------------------------GNQLLLIYEYLENNSLARALF---EHRLKLDWPTRRRICLGIARGLAYL 529 (756)
Q Consensus 484 -------------------------------~~~~~lV~e~~~~gsL~~~l~---~~~~~l~~~~~~~i~~~ia~~L~~L 529 (756)
....++||||++ |+|.+.+. .....+++..+..++.||++||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L 157 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI 157 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 334899999998 48877775 3456799999999999999999999
Q ss_pred HcCCCCCeEcCCCCCCceEec-CCCCEEEccCCccccCcccCcceeeccccCccCCchHhhhcC-CCCcccchhhHHHHH
Q 004400 530 HGESRIKVVHRDIKATNVLLD-KDLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVA 607 (756)
Q Consensus 530 H~~g~~~iiH~Dikp~Nill~-~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l 607 (756)
|+.| |+||||||+||+++ .++.+||+|||+++....... .....||+.|+|||.+.+. .++.++||||+||++
T Consensus 158 H~~g---i~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il 232 (383)
T 3eb0_A 158 HSLG---ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP--SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVF 232 (383)
T ss_dssp HTTT---EECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC--CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHH
T ss_pred HHCc---CccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC--CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHH
Confidence 9987 99999999999998 688999999999986544332 2345789999999998874 599999999999999
Q ss_pred HHHHhCCCCCCccchhhHHHHHHHHHhcCccc----------cccccCCC-C----CCCHHHHHHHHHHHHHhhcCCCCC
Q 004400 608 LEIVSGRSNVTKEDMFYLLDWALVLKEQGKLM----------ELVDTNPG-S----NFDKEQVMVMINVALLCANASPTI 672 (756)
Q Consensus 608 ~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-~----~~~~~~~~~l~~l~~~c~~~~P~~ 672 (756)
|||++|+.||...................... +..-+... . .++......+.+++.+||+.||++
T Consensus 233 ~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 312 (383)
T 3eb0_A 233 GELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDL 312 (383)
T ss_dssp HHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGG
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhh
Confidence 99999999997766544333222211111100 00000000 0 011112335889999999999999
Q ss_pred CCCHHHHHH
Q 004400 673 RPSMSSVLR 681 (756)
Q Consensus 673 RPt~~ev~~ 681 (756)
|||+.|+++
T Consensus 313 R~t~~e~l~ 321 (383)
T 3eb0_A 313 RINPYEAMA 321 (383)
T ss_dssp SCCHHHHHT
T ss_pred CCCHHHHhc
Confidence 999999975
No 189
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=2.1e-39 Score=365.54 Aligned_cols=251 Identities=24% Similarity=0.377 Sum_probs=200.7
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
.+.|...+.||+|+||.||+|+. .++..||+|++.... ......+.+|+.+++.++|||||+++++|.++...++||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 45788899999999999999995 578999999987542 334577899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCC---CCEEEccCCccccCcc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKD---LNSKISDFGLAKLDEE 568 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~---~~~kl~DFGla~~~~~ 568 (756)
|||++|+|.+.+... ..+++..+..++.||+.||+|||+.| |+||||||+|||++.. +.+||+|||+++....
T Consensus 116 e~~~~g~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~ 191 (494)
T 3lij_A 116 ECYKGGELFDEIIHR-MKFNEVDAAVIIKQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFEN 191 (494)
T ss_dssp ECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCTTCEECBT
T ss_pred ecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChhhEEEeCCCCCCcEEEEECCCCeECCC
Confidence 999999999988654 47999999999999999999999997 9999999999999764 4599999999987654
Q ss_pred cCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCC
Q 004400 569 ENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGS 648 (756)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (756)
... .....||+.|+|||++. +.++.++||||+||++|+|++|+.||............ .. +... .......
T Consensus 192 ~~~--~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i---~~-~~~~--~~~~~~~ 262 (494)
T 3lij_A 192 QKK--MKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKV---EK-GKYT--FDSPEWK 262 (494)
T ss_dssp TBC--BCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH-TCCC--CCSGGGT
T ss_pred Ccc--ccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---Hh-CCCC--CCchhcc
Confidence 322 23467999999999886 57999999999999999999999999776654433221 11 1110 0011111
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 649 NFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 649 ~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..+ ..+.+++.+||+.||.+|||+.|+++.
T Consensus 263 ~~s----~~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 263 NVS----EGAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp TSC----HHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred cCC----HHHHHHHHHHCCCChhhCccHHHHhcC
Confidence 223 348899999999999999999999753
No 190
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=3.7e-39 Score=340.04 Aligned_cols=249 Identities=29% Similarity=0.456 Sum_probs=207.2
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
.+.|...+.||+|+||.||+|+ ..+++.||||.+.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 3568889999999999999998 4578999999986543 3345789999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTH 572 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~ 572 (756)
|+++++|.+++.. ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||++........
T Consensus 101 ~~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 174 (303)
T 3a7i_A 101 YLGGGSALDLLEP--GPLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI- 174 (303)
T ss_dssp CCTTEEHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC-
T ss_pred eCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChheEEECCCCCEEEeecccceecCcccc-
Confidence 9999999999854 46899999999999999999999997 99999999999999999999999999986544322
Q ss_pred eeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCH
Q 004400 573 ISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDK 652 (756)
Q Consensus 573 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (756)
......||+.|+|||++.+..++.++||||||+++|||++|+.||............ ...... .....++
T Consensus 175 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~----~~~~~~-----~~~~~~~- 244 (303)
T 3a7i_A 175 KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLI----PKNNPP-----TLEGNYS- 244 (303)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH----HHSCCC-----CCCSSCC-
T ss_pred ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHh----hcCCCC-----CCccccC-
Confidence 223457899999999999989999999999999999999999999665443322211 111111 1112233
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 653 EQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 653 ~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..+.+++.+||+.||++|||+.|+++.
T Consensus 245 ---~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 245 ---KPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp ---HHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred ---HHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 348899999999999999999999875
No 191
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=2.8e-39 Score=337.92 Aligned_cols=245 Identities=24% Similarity=0.374 Sum_probs=199.5
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc--CcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK--SKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 489 (756)
..++|...+.||+|+||.||+|.. .+++.||+|.+... .......+.+|+..+..+ +||||+++++++.+++..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 346889999999999999999995 47999999998754 233456788999999999 99999999999999999999
Q ss_pred EEEecCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCC--------------
Q 004400 490 IYEYLENNSLARALFEH---RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKD-------------- 552 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~---~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~-------------- 552 (756)
||||+++|+|.+++... ...+++..+..++.||+.||+|||+++ |+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~ 165 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMS---LVHMDIKPSNIFISRTSIPNAASEEGDEDD 165 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEC----------------
T ss_pred EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeecCCCHHHEEEcCCCCCccccccccccc
Confidence 99999999999999743 256899999999999999999999997 9999999999999844
Q ss_pred -----CCEEEccCCccccCcccCcceeeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCCCCCCccchhhHH
Q 004400 553 -----LNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLL 626 (756)
Q Consensus 553 -----~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 626 (756)
..+||+|||.+....... ...||+.|+|||.+.+. .++.++|||||||++|||++|+.++.......
T Consensus 166 ~~~~~~~~kl~Dfg~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~-- 238 (289)
T 1x8b_A 166 WASNKVMFKIGDLGHVTRISSPQ-----VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWH-- 238 (289)
T ss_dssp ----CCCEEECCCTTCEETTCSC-----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHHH--
T ss_pred ccCCceEEEEcccccccccCCcc-----ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhHHH--
Confidence 479999999998655432 23589999999999875 56789999999999999999988765443211
Q ss_pred HHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 627 DWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
. ...+.... ....++ ..+.+++.+||+.||++|||+.|+++.
T Consensus 239 ---~--~~~~~~~~-----~~~~~~----~~~~~li~~~l~~dp~~Rps~~~ll~h 280 (289)
T 1x8b_A 239 ---E--IRQGRLPR-----IPQVLS----QEFTELLKVMIHPDPERRPSAMALVKH 280 (289)
T ss_dssp ---H--HHTTCCCC-----CSSCCC----HHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred ---H--HHcCCCCC-----CCcccC----HHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence 1 11111111 112233 348899999999999999999999764
No 192
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=7.4e-40 Score=349.19 Aligned_cols=257 Identities=21% Similarity=0.302 Sum_probs=203.6
Q ss_pred HHHhhcCcccc-CcccCCCCccEEEeec-cCCcEEEEEEcccc--CcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCC
Q 004400 411 IKAATNNFATD-NNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK--SKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGN 485 (756)
Q Consensus 411 ~~~~~~~~~~~-~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 485 (756)
.+...+.|... +.||+|+||.||+|+. .+++.||+|++... .......+.+|+.+++.+ +||||+++++++.+++
T Consensus 23 ~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~ 102 (327)
T 3lm5_A 23 MENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTS 102 (327)
T ss_dssp HHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred HHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC
Confidence 34455667766 8999999999999994 57999999998754 233457889999999999 4699999999999999
Q ss_pred eEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC---CCCEEEccCC
Q 004400 486 QLLLIYEYLENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK---DLNSKISDFG 561 (756)
Q Consensus 486 ~~~lV~e~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~---~~~~kl~DFG 561 (756)
..++||||+++|+|.+++... ...+++..+..++.|++.||+|||+.| |+||||||+||+++. ++.+||+|||
T Consensus 103 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~g---ivH~Dikp~NIl~~~~~~~~~~kL~Dfg 179 (327)
T 3lm5_A 103 EIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNN---IVHLDLKPQNILLSSIYPLGDIKIVDFG 179 (327)
T ss_dssp EEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESCBTTBCCEEECCGG
T ss_pred eEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCChHHEEEecCCCCCcEEEeeCc
Confidence 999999999999999988633 457999999999999999999999997 999999999999998 7899999999
Q ss_pred ccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccc
Q 004400 562 LAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMEL 641 (756)
Q Consensus 562 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (756)
+++....... .....||+.|+|||++.+..++.++||||||+++|||++|+.||...+......... ......
T Consensus 180 ~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~--~~~~~~--- 252 (327)
T 3lm5_A 180 MSRKIGHACE--LREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNIS--QVNVDY--- 252 (327)
T ss_dssp GCEEC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH--HTCCCC---
T ss_pred cccccCCccc--cccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHH--hccccc---
Confidence 9986544322 234579999999999999999999999999999999999999997665443322111 110000
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 642 VDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 642 ~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
........ ...+.+++.+||+.||++|||+.|+++.
T Consensus 253 -~~~~~~~~----~~~~~~li~~~L~~dP~~Rpt~~~ll~h 288 (327)
T 3lm5_A 253 -SEETFSSV----SQLATDFIQSLLVKNPEKRPTAEICLSH 288 (327)
T ss_dssp -CTTTTTTS----CHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred -Cchhhccc----CHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence 00111122 2348899999999999999999999764
No 193
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=1.2e-40 Score=362.55 Aligned_cols=241 Identities=14% Similarity=0.142 Sum_probs=190.7
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc---CcccHHHHHHHH---HHHHhCCCCceeeEe-------e
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK---SKQGNREFINEI---GMISALQHPNLVKLY-------G 479 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~---~~l~~l~h~niv~l~-------~ 479 (756)
..++|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+ +++++++|||||+++ +
T Consensus 71 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~ 150 (377)
T 3byv_A 71 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD 150 (377)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSE
T ss_pred CCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhh
Confidence 357889999999999999999995 67999999998743 333457789999 555666899999998 6
Q ss_pred EEEeCCe-----------------EEEEEEecCCCCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHcCCCCC
Q 004400 480 CCIEGNQ-----------------LLLIYEYLENNSLARALFEHRL------KLDWPTRRRICLGIARGLAYLHGESRIK 536 (756)
Q Consensus 480 ~~~~~~~-----------------~~lV~e~~~~gsL~~~l~~~~~------~l~~~~~~~i~~~ia~~L~~LH~~g~~~ 536 (756)
++.+++. .++||||+ +|+|.+++..... .+++..+..++.||+.||+|||++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--- 226 (377)
T 3byv_A 151 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG--- 226 (377)
T ss_dssp EEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred hhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCC---
Confidence 6665532 89999999 6899999975421 2335888899999999999999997
Q ss_pred eEcCCCCCCceEecCCCCEEEccCCccccCcccCcceeeccccCccCCchHhhhcC-----------CCCcccchhhHHH
Q 004400 537 VVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRG-----------HLTEKADVYSFGI 605 (756)
Q Consensus 537 iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~slGv 605 (756)
|+||||||+|||++.++.+||+|||+++.... ......| +.|+|||++.+. .++.++|||||||
T Consensus 227 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~ 301 (377)
T 3byv_A 227 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGL 301 (377)
T ss_dssp EECSCCCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHH
T ss_pred eecCCCCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHH
Confidence 99999999999999999999999999985332 2344567 999999999887 8999999999999
Q ss_pred HHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 606 VALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 606 ~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
++|||++|+.||.......... .+.. . ...++. .+.+++.+||+.||++||++.|+++
T Consensus 302 il~elltg~~Pf~~~~~~~~~~------------~~~~-~-~~~~~~----~~~~li~~~L~~dp~~Rpt~~e~l~ 359 (377)
T 3byv_A 302 VIYWIWCADLPITKDAALGGSE------------WIFR-S-CKNIPQ----PVRALLEGFLRYPKEDRLLPLQAME 359 (377)
T ss_dssp HHHHHHHSSCCC------CCSG------------GGGS-S-CCCCCH----HHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred HHHHHHHCCCCCcccccccchh------------hhhh-h-ccCCCH----HHHHHHHHHcCCCchhCCCHHHHhh
Confidence 9999999999996543222111 1111 1 122333 4889999999999999999999976
No 194
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=3.8e-39 Score=360.21 Aligned_cols=193 Identities=24% Similarity=0.432 Sum_probs=154.1
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeC-----Ce
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEG-----NQ 486 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 486 (756)
.++|...+.||+|+||.||+|+ ..+++.||||++... .....+.+.+|+++++.++|||||++++++... ..
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 3689999999999999999998 457899999998653 233456789999999999999999999999543 57
Q ss_pred EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 487 LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
.|+||||+. |+|.+++.. ...+++..+..++.||+.||+|||+.+ ||||||||+|||++.++.+||+|||+|+..
T Consensus 132 ~~lv~e~~~-~~L~~~~~~-~~~l~~~~~~~~~~qi~~aL~~LH~~~---iiHrDlKp~NILl~~~~~~kl~DFGla~~~ 206 (458)
T 3rp9_A 132 LYVVLEIAD-SDFKKLFRT-PVYLTELHIKTLLYNLLVGVKYVHSAG---ILHRDLKPANCLVNQDCSVKVCDFGLARTV 206 (458)
T ss_dssp EEEEECCCS-EEHHHHHHS-SCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTCBCT
T ss_pred EEEEEeccc-cchhhhccc-CCCCCHHHHHHHHHHHHHHHHHHHhCC---cCCCCCChhhEEECCCCCEeecccccchhc
Confidence 899999985 689988864 357999999999999999999999997 999999999999999999999999999865
Q ss_pred cccCc--------------------------ceeeccccCccCCchHhhh-cCCCCcccchhhHHHHHHHHHh
Q 004400 567 EEENT--------------------------HISTRVAGTIGYMAPEYAM-RGHLTEKADVYSFGIVALEIVS 612 (756)
Q Consensus 567 ~~~~~--------------------------~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~slGv~l~ellt 612 (756)
..... ...+..+||+.|+|||++. ...++.++|||||||++|||++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt 279 (458)
T 3rp9_A 207 DYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN 279 (458)
T ss_dssp TSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred cCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence 43211 1223457899999999874 5679999999999999999999
No 195
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=1.1e-39 Score=367.23 Aligned_cols=251 Identities=26% Similarity=0.393 Sum_probs=206.3
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC---cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS---KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|+. .+|+.||||++.... ......+.+|++++++++|||||++++++.+.+..++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 45788899999999999999995 478999999986532 34567899999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe---cCCCCEEEccCCccccCc
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL---DKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill---~~~~~~kl~DFGla~~~~ 567 (756)
|||+.+|+|.+++... ..+++..+..++.||+.||+|||+++ |+||||||+|||+ +.++.+||+|||+++...
T Consensus 105 ~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 180 (484)
T 3nyv_A 105 GEVYTGGELFDEIISR-KRFSEVDAARIIRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE 180 (484)
T ss_dssp ECCCCSCBHHHHHHTC-SCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBC
T ss_pred EecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcc
Confidence 9999999999998754 47999999999999999999999997 9999999999999 567889999999998654
Q ss_pred ccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 568 EENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
.... .....||+.|+|||++.+ .++.++||||+||++|+|++|+.||...+......... ......... ..
T Consensus 181 ~~~~--~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~---~~~~~~~~~---~~ 251 (484)
T 3nyv_A 181 ASKK--MKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVE---KGKYTFELP---QW 251 (484)
T ss_dssp CCCS--HHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH---HCCCCCCSG---GG
T ss_pred cccc--cccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH---cCCCCCCCc---cc
Confidence 4322 234579999999999865 79999999999999999999999998776554433221 111100000 00
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
... ...+.+++.+|++.+|++|||+.|+++.
T Consensus 252 ~~~----s~~~~~li~~~L~~dp~~R~s~~e~l~h 282 (484)
T 3nyv_A 252 KKV----SESAKDLIRKMLTYVPSMRISARDALDH 282 (484)
T ss_dssp GGS----CHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred ccC----CHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence 112 2348899999999999999999999864
No 196
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=3.8e-39 Score=364.33 Aligned_cols=251 Identities=26% Similarity=0.380 Sum_probs=202.6
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCc-------------ccHHHHHHHHHHHHhCCCCceeeEeeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSK-------------QGNREFINEIGMISALQHPNLVKLYGC 480 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~niv~l~~~ 480 (756)
.++|...+.||+|+||+||+|.. .+++.||+|++..... ...+.+.+|+.++++++|||||+++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 46899999999999999999994 5688999999865421 234678999999999999999999999
Q ss_pred EEeCCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCC---CEEE
Q 004400 481 CIEGNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDL---NSKI 557 (756)
Q Consensus 481 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~---~~kl 557 (756)
|.++...++|||||++|+|.+++... ..+++..+..++.||+.||+|||+.| |+||||||+|||++.++ .+||
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl 190 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIINR-HKFDECDAANIMKQILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKI 190 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESSTTCCSSEEE
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCcHHHEEEecCCCCccEEE
Confidence 99999999999999999999998754 47999999999999999999999997 99999999999998776 6999
Q ss_pred ccCCccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc
Q 004400 558 SDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK 637 (756)
Q Consensus 558 ~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 637 (756)
+|||+++....... .....||+.|+|||++. +.++.++||||+||++|+|++|+.||...+........ .. +.
T Consensus 191 ~Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i---~~-~~ 263 (504)
T 3q5i_A 191 VDFGLSSFFSKDYK--LRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKV---EK-GK 263 (504)
T ss_dssp CCCTTCEECCTTSC--BCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH-CC
T ss_pred EECCCCEEcCCCCc--cccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---Hc-CC
Confidence 99999987654322 23457999999999986 56999999999999999999999999776654433221 11 11
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 638 LMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
... ........+ ..+.+++.+|++.||.+|||+.|+++.
T Consensus 264 ~~~--~~~~~~~~s----~~~~~li~~~L~~dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 264 YYF--DFNDWKNIS----DEAKELIKLMLTYDYNKRCTAEEALNS 302 (504)
T ss_dssp CCC--CHHHHTTSC----HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCC--CccccCCCC----HHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 100 000001122 348899999999999999999999764
No 197
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=5.3e-40 Score=362.07 Aligned_cols=254 Identities=21% Similarity=0.341 Sum_probs=191.8
Q ss_pred HhhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccC--------cccHHHHHHHHHHHHhCCCCceeeEeeEEEe
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKS--------KQGNREFINEIGMISALQHPNLVKLYGCCIE 483 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 483 (756)
...++|...+.||+|+||.||+|. ..+++.||||++.... ......+.+|++++++++||||+++++++.
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~- 210 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD- 210 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence 346789999999999999999998 4578999999986532 111234789999999999999999999975
Q ss_pred CCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCC---CEEEccC
Q 004400 484 GNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDL---NSKISDF 560 (756)
Q Consensus 484 ~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~---~~kl~DF 560 (756)
.+..++||||+++|+|.+++... ..+++..+..++.|++.||+|||+++ |+||||||+|||++.++ .+||+||
T Consensus 211 ~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~~~~kl~DF 286 (419)
T 3i6u_A 211 AEDYYIVLELMEGGELFDKVVGN-KRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDF 286 (419)
T ss_dssp SSEEEEEEECCTTCBGGGGTSSS-CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSSSCCEEECCS
T ss_pred cCceEEEEEcCCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCCCcceEEEeec
Confidence 45689999999999999888543 47999999999999999999999997 99999999999997544 5999999
Q ss_pred CccccCcccCcceeeccccCccCCchHhhhc---CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc
Q 004400 561 GLAKLDEEENTHISTRVAGTIGYMAPEYAMR---GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK 637 (756)
Q Consensus 561 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 637 (756)
|+++...... ......||+.|+|||++.. ..++.++|||||||++|||++|+.||.......... ... ..+.
T Consensus 287 G~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~--~~i-~~~~ 361 (419)
T 3i6u_A 287 GHSKILGETS--LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLK--DQI-TSGK 361 (419)
T ss_dssp STTTSCC-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHH--HHH-HTTC
T ss_pred ccceecCCCc--cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHH--HHH-hcCC
Confidence 9998765432 2344679999999999853 568899999999999999999999996543211111 001 1111
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 638 LMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
...... ..... ...+.+++.+|++.||++||++.|+++.
T Consensus 362 ~~~~~~--~~~~~----~~~~~~li~~~L~~dP~~Rps~~e~l~h 400 (419)
T 3i6u_A 362 YNFIPE--VWAEV----SEKALDLVKKLLVVDPKARFTTEEALRH 400 (419)
T ss_dssp CCCCHH--HHTTS----CHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred CCCCch--hhccc----CHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence 100000 00111 2358899999999999999999999874
No 198
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=4.6e-39 Score=338.53 Aligned_cols=261 Identities=25% Similarity=0.359 Sum_probs=201.7
Q ss_pred cCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
++|+..+.||+|+||.||+|+. .+|+.||||++.... ......+.+|+.++++++||||+++++++.+++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 5788999999999999999995 478999999986542 2234678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 493 YLENNSLARALFEHR-LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
|++ |+|.+++.... ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++.......
T Consensus 83 ~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~ 158 (299)
T 2r3i_A 83 FLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR 158 (299)
T ss_dssp CCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCSB
T ss_pred ccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHeEEcCCCCEEECcchhhhhccCCcc
Confidence 998 59999987543 46899999999999999999999997 99999999999999999999999999976543222
Q ss_pred ceeeccccCccCCchHhhhcCC-CCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcc------ccccc-
Q 004400 572 HISTRVAGTIGYMAPEYAMRGH-LTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKL------MELVD- 643 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 643 (756)
......||+.|+|||.+.+.. ++.++||||||+++|||++|+.||...+................. ....+
T Consensus 159 -~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (299)
T 2r3i_A 159 -TYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY 237 (299)
T ss_dssp -CTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred -ccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCchhhhhHhhcCccc
Confidence 123346899999999998765 799999999999999999999999776554332221111110000 00000
Q ss_pred -cCCCC----CC---CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 644 -TNPGS----NF---DKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 644 -~~~~~----~~---~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
..... .+ .+.....+.+++.+|++.||++|||+.|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 238 KPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp CTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred chhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 00000 00 0012235889999999999999999999987
No 199
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=9.7e-40 Score=378.50 Aligned_cols=257 Identities=25% Similarity=0.382 Sum_probs=207.3
Q ss_pred hhcCccccCcccCCCCccEEEeecc----CCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLA----DGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLL 488 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 488 (756)
..++|...+.||+|+||.||+|.+. .+..||||.+.... ....+.+.+|+.++++++||||+++++++. ++..+
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~ 466 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 466 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceE
Confidence 4567899999999999999999853 24679999987543 333467999999999999999999999985 46689
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEE 568 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~ 568 (756)
+||||+++|+|.+++......+++..+..++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 467 lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDikp~NILl~~~~~vkL~DFG~a~~~~~ 543 (656)
T 2j0j_A 467 IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 543 (656)
T ss_dssp EEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCCCCSCCC
T ss_pred EEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchHhEEEeCCCCEEEEecCCCeecCC
Confidence 999999999999999877678999999999999999999999997 99999999999999999999999999987655
Q ss_pred cCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 569 ENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 569 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
..........||+.|+|||++.+..++.++|||||||++|||++ |+.||............ . .+..... .
T Consensus 544 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i---~-~~~~~~~-----~ 614 (656)
T 2j0j_A 544 STYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRI---E-NGERLPM-----P 614 (656)
T ss_dssp ----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHH---H-HTCCCCC-----C
T ss_pred CcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH---H-cCCCCCC-----C
Confidence 44333444567889999999999999999999999999999997 99999766544433221 1 1111111 1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCc
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGV 687 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~ 687 (756)
..++ ..+.+++.+||+.||++||++.++++.|+.+.
T Consensus 615 ~~~~----~~l~~li~~~l~~dP~~RPs~~el~~~L~~il 650 (656)
T 2j0j_A 615 PNCP----PTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 650 (656)
T ss_dssp TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cccc----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 1223 34889999999999999999999999998653
No 200
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=2.4e-39 Score=347.61 Aligned_cols=263 Identities=27% Similarity=0.352 Sum_probs=207.1
Q ss_pred HhhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHh--CCCCceeeEeeEEEeCC----e
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISA--LQHPNLVKLYGCCIEGN----Q 486 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~ 486 (756)
...++|...+.||+|+||.||+|.. +++.||||++... ....+.+|++++.. ++||||+++++++..+. .
T Consensus 39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~ 114 (342)
T 1b6c_B 39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 114 (342)
T ss_dssp HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCC
T ss_pred cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccce
Confidence 3456899999999999999999987 4899999998643 34678889999887 78999999999998876 8
Q ss_pred EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH--------cCCCCCeEcCCCCCCceEecCCCCEEEc
Q 004400 487 LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLH--------GESRIKVVHRDIKATNVLLDKDLNSKIS 558 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH--------~~g~~~iiH~Dikp~Nill~~~~~~kl~ 558 (756)
.++||||+++|+|.+++... .+++..+..++.|++.||+||| +.+ |+||||||+||+++.++.+||+
T Consensus 115 ~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~NIll~~~~~~kL~ 189 (342)
T 1b6c_B 115 LWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA---IAHRDLKSKNILVKKNGTCCIA 189 (342)
T ss_dssp EEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE---EECSCCSGGGEEECTTSCEEEC
T ss_pred eEEEEeecCCCcHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCC---eeeCCCCHHHEEECCCCCEEEE
Confidence 99999999999999999753 6899999999999999999999 665 9999999999999999999999
Q ss_pred cCCccccCcccCcc---eeeccccCccCCchHhhhcCC------CCcccchhhHHHHHHHHHhC----------CCCCCc
Q 004400 559 DFGLAKLDEEENTH---ISTRVAGTIGYMAPEYAMRGH------LTEKADVYSFGIVALEIVSG----------RSNVTK 619 (756)
Q Consensus 559 DFGla~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~slGv~l~elltg----------~~p~~~ 619 (756)
|||+++........ ......||+.|+|||++.+.. ++.++|||||||++|||++| +.||..
T Consensus 190 Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~ 269 (342)
T 1b6c_B 190 DLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYD 269 (342)
T ss_dssp CCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred ECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccc
Confidence 99999865543322 223457999999999997652 33689999999999999999 778754
Q ss_pred cchh--hHHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 620 EDMF--YLLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 620 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
.... ....+............... .....+....+.+++.+||+.||++|||+.||++.|+.+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~ 336 (342)
T 1b6c_B 270 LVPSDPSVEEMRKVVCEQKLRPNIPN----RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 336 (342)
T ss_dssp TSCSSCCHHHHHHHHTTSCCCCCCCG----GGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCcCcccHHHHHHHHHHHHhCCCCcc----cccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHH
Confidence 3211 11112211111111111111 01123556679999999999999999999999999996543
No 201
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.8e-40 Score=351.37 Aligned_cols=260 Identities=22% Similarity=0.309 Sum_probs=191.6
Q ss_pred hhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCC-CCceeeEeeEEEe--------
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQ-HPNLVKLYGCCIE-------- 483 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~-------- 483 (756)
...+|...+.||+|+||.||+|+ ..+++.||||++........+.+.+|+.+++++. ||||+++++++..
T Consensus 26 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~ 105 (337)
T 3ll6_A 26 GELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG 105 (337)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred cCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence 34578899999999999999999 4578999999987666666678999999999996 9999999999953
Q ss_pred CCeEEEEEEecCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCC
Q 004400 484 GNQLLLIYEYLENNSLARALFE--HRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFG 561 (756)
Q Consensus 484 ~~~~~lV~e~~~~gsL~~~l~~--~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFG 561 (756)
....++||||+. |+|.+++.. ....+++..+..++.||+.||+|||+.+ ++|+||||||+|||++.++.+||+|||
T Consensus 106 ~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~-~~ivH~Dikp~NIl~~~~~~~kl~Dfg 183 (337)
T 3ll6_A 106 QAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQK-PPIIHRDLKVENLLLSNQGTIKLCDFG 183 (337)
T ss_dssp SEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCCCCCGGGCEECTTSCEEBCCCT
T ss_pred CceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCC-CCEEEccCCcccEEECCCCCEEEecCc
Confidence 345899999996 699998864 4457999999999999999999999874 349999999999999999999999999
Q ss_pred ccccCcccCcce-----------eeccccCccCCchHhh---hcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHH
Q 004400 562 LAKLDEEENTHI-----------STRVAGTIGYMAPEYA---MRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLD 627 (756)
Q Consensus 562 la~~~~~~~~~~-----------~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 627 (756)
+++......... .....||+.|+|||++ .+..++.++|||||||++|||++|+.||..........
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~ 263 (337)
T 3ll6_A 184 SATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVN 263 (337)
T ss_dssp TCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC----------
T ss_pred cceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhhc
Confidence 998765432211 1134689999999998 56678999999999999999999999996543322111
Q ss_pred HHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCccccc
Q 004400 628 WALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVDVLD 691 (756)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~~~~ 691 (756)
. ..........+ ..+.+++.+||+.||++||++.|+++.|+.+.....
T Consensus 264 ------~------~~~~~~~~~~~----~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~ 311 (337)
T 3ll6_A 264 ------G------KYSIPPHDTQY----TVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN 311 (337)
T ss_dssp --------------CCCCTTCCSS----GGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred ------C------cccCCcccccc----hHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence 0 00001111111 237889999999999999999999999997755443
No 202
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=6.6e-40 Score=340.69 Aligned_cols=253 Identities=29% Similarity=0.444 Sum_probs=203.6
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 492 (756)
.++|+..+.||+|+||.||+|.. .+++.||||.+.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 45788999999999999999995 478999999986542 3345678999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc-
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT- 571 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~- 571 (756)
|+++++|.+++.. ...+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||++........
T Consensus 86 ~~~~~~L~~~l~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~ 161 (276)
T 2yex_A 86 YCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161 (276)
T ss_dssp CCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred ecCCCcHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCChHHEEEccCCCEEEeeCCCccccCCCcch
Confidence 9999999998854 346899999999999999999999997 99999999999999999999999999986543322
Q ss_pred ceeeccccCccCCchHhhhcCCC-CcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHL-TEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNF 650 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (756)
.......||+.|+|||.+.+..+ +.++||||||+++|||++|+.||........ .+.. ........ .....+
T Consensus 162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~-~~~~~~~~-----~~~~~~ 234 (276)
T 2yex_A 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ-EYSD-WKEKKTYL-----NPWKKI 234 (276)
T ss_dssp CCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSH-HHHH-HHTTCTTS-----TTGGGS
T ss_pred hcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHH-HHHH-hhhccccc-----Cchhhc
Confidence 12334679999999999987665 7799999999999999999999965433211 1111 11111100 001112
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 651 DKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 651 ~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
+ ..+.+++.+||+.||++|||+.|+++.
T Consensus 235 ~----~~~~~li~~~l~~~p~~Rps~~~il~~ 262 (276)
T 2yex_A 235 D----SAPLALLHKILVENPSARITIPDIKKD 262 (276)
T ss_dssp C----HHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred C----HHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence 2 348899999999999999999998763
No 203
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=2.2e-39 Score=376.62 Aligned_cols=250 Identities=22% Similarity=0.327 Sum_probs=207.0
Q ss_pred HhhcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc---CcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeE
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK---SKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQL 487 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 487 (756)
...++|+..+.||+|+||.||+|+. .+++.||||+++.. .....+.+..|..++..+ +||+|+++++++.+.+..
T Consensus 338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~ 417 (674)
T 3pfq_A 338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL 417 (674)
T ss_dssp --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEE
T ss_pred ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEE
Confidence 3457899999999999999999994 56889999998753 233456788899999988 799999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
|+||||+++|+|.+++.... .+++..+..++.||+.||+|||+.+ ||||||||+|||++.++.+||+|||+|+...
T Consensus 418 ~lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~g---IiHrDLKp~NILl~~~g~ikL~DFGla~~~~ 493 (674)
T 3pfq_A 418 YFVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENI 493 (674)
T ss_dssp EEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTS---EECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred EEEEeCcCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCC---eEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence 99999999999999997654 7999999999999999999999997 9999999999999999999999999998543
Q ss_pred ccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 568 EENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
.... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||...+........ ... .
T Consensus 494 ~~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i---~~~-~---------- 558 (674)
T 3pfq_A 494 WDGV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSI---MEH-N---------- 558 (674)
T ss_dssp CTTC-CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HSS-C----------
T ss_pred cCCc-ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHH---HhC-C----------
Confidence 3222 234578999999999999999999999999999999999999999877654433221 111 1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCH-----HHHHH
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSM-----SSVLR 681 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~-----~ev~~ 681 (756)
..++......+.+++.+|++.||++||++ .||.+
T Consensus 559 ~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~ 597 (674)
T 3pfq_A 559 VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 597 (674)
T ss_dssp CCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred CCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence 01111223458899999999999999997 66654
No 204
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=8.2e-40 Score=342.56 Aligned_cols=251 Identities=23% Similarity=0.368 Sum_probs=186.2
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCc-ccH-HHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSK-QGN-REFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~-~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
..++|+..+.||+|+||.||+|.. .+++.||+|++..... ... +.+.++...++.++||||+++++++.+++..++|
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 84 (290)
T 3fme_A 5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 84 (290)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence 346889999999999999999994 6899999999975422 222 3344455568888999999999999999999999
Q ss_pred EEecCCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 491 YEYLENNSLARALFE---HRLKLDWPTRRRICLGIARGLAYLHGE-SRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~---~~~~l~~~~~~~i~~~ia~~L~~LH~~-g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
|||+++ +|.+++.. ....+++..+..++.|++.||+|||++ | |+||||||+||+++.++.+||+|||+++..
T Consensus 85 ~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 160 (290)
T 3fme_A 85 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS---VIHRDVKPSNVLINALGQVKMCDFGISGYL 160 (290)
T ss_dssp EECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSC---CCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred Eehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence 999985 88777753 456899999999999999999999997 6 999999999999999999999999999865
Q ss_pred cccCcceeeccccCccCCchHhh----hcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccccc
Q 004400 567 EEENTHISTRVAGTIGYMAPEYA----MRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELV 642 (756)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (756)
..... .....||+.|+|||++ .+..++.++||||||+++|||++|+.||........ .... ..... ....
T Consensus 161 ~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~-~~~~~-~~~~- 234 (290)
T 3fme_A 161 VDDVA--KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQ-QLKQ-VVEEP-SPQL- 234 (290)
T ss_dssp -----------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHH-HHHH-HHHSC-CCCC-
T ss_pred ccccc--ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHH-HHHH-HhccC-CCCc-
Confidence 44322 2334699999999996 456789999999999999999999999964322111 1111 11111 1111
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 643 DTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
+...++ ..+.+++.+|++.||++|||+.|+++
T Consensus 235 ---~~~~~~----~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 235 ---PADKFS----AEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp ---CTTTSC----HHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ---ccccCC----HHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 111233 34889999999999999999999976
No 205
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=4e-39 Score=344.10 Aligned_cols=256 Identities=16% Similarity=0.261 Sum_probs=199.3
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCC-CCceeeEeeEEEe--CCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQ-HPNLVKLYGCCIE--GNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~lV 490 (756)
.++|+..+.||+|+||.||+|+ ..+++.||||++... ..+.+.+|++++++++ ||||+++++++.+ ....++|
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 3678999999999999999998 567899999998643 3467899999999997 9999999999998 6778999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCC-CEEEccCCccccCccc
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDL-NSKISDFGLAKLDEEE 569 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~-~~kl~DFGla~~~~~~ 569 (756)
|||+++++|.+++. .+++..+..++.|++.||+|||+.| |+||||||+|||++.++ .+||+|||+++.....
T Consensus 112 ~e~~~~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~ 184 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG 184 (330)
T ss_dssp EECCCCCCHHHHGG----GCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred EeccCchhHHHHHH----hCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC
Confidence 99999999998874 4889999999999999999999997 99999999999999777 7999999999865543
Q ss_pred CcceeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccc-hhhHHHHHHHHHhcCcccc-------
Q 004400 570 NTHISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKED-MFYLLDWALVLKEQGKLME------- 640 (756)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~-~~~~~~~~~~~~~~~~~~~------- 640 (756)
.. .....||..|+|||++.+ ..++.++|||||||++|||++|+.||.... ..................+
T Consensus 185 ~~--~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 262 (330)
T 3nsz_A 185 QE--YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNI 262 (330)
T ss_dssp CC--CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTC
T ss_pred Cc--cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhcc
Confidence 32 234578999999999987 679999999999999999999999994332 1111111000000000000
Q ss_pred --------ccc--------cCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 641 --------LVD--------TNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 641 --------~~~--------~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
... ..............+.+++.+|++.||++|||+.|+++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h 320 (330)
T 3nsz_A 263 ELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH 320 (330)
T ss_dssp CCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred ccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence 000 000000111123458899999999999999999999873
No 206
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=3.9e-39 Score=334.91 Aligned_cols=248 Identities=24% Similarity=0.406 Sum_probs=197.5
Q ss_pred hcCccccCcccCCCCccEEEeecc-CCcEEEEEEccccC---cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKS---KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
.++|...+.||+|+||.||+|... +|+.||||.+.... ....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 357889999999999999999954 79999999986532 23456789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++++|.+++... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~ 165 (276)
T 2h6d_A 90 MEYVSGGELFDYICKH-GRVEEMEARRLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165 (276)
T ss_dssp EECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHHC---SSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred EeccCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChhhEEECCCCCEEEeecccccccCCCc
Confidence 9999999999999755 36899999999999999999999997 9999999999999999999999999998655432
Q ss_pred cceeeccccCccCCchHhhhcCCC-CcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCC
Q 004400 571 THISTRVAGTIGYMAPEYAMRGHL-TEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSN 649 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
. .....||+.|+|||.+.+..+ +.++||||||+++|+|++|+.||............ .. ... . ....
T Consensus 166 ~--~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~---~~-~~~-~-----~~~~ 233 (276)
T 2h6d_A 166 F--LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKI---RG-GVF-Y-----IPEY 233 (276)
T ss_dssp -------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH---HH-CCC-C-----CCTT
T ss_pred c--eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHh---hc-Ccc-c-----Cchh
Confidence 2 234568999999999987765 68999999999999999999999765543332211 11 110 0 1112
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.+ ..+.+++.+|++.||++|||+.|+++.
T Consensus 234 ~~----~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 234 LN----RSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp SC----HHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred cC----HHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 22 348899999999999999999999874
No 207
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=4.6e-39 Score=356.18 Aligned_cols=198 Identities=24% Similarity=0.424 Sum_probs=166.7
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeC-----Ce
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEG-----NQ 486 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 486 (756)
.++|...+.||+|+||.||+|+ ..+++.||||++... .....+.+.+|+.++++++||||+++++++... ..
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 4688999999999999999999 457889999999754 233456789999999999999999999999876 57
Q ss_pred EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 487 LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
.|+||||++ |+|.+++.. ...+++..+..++.||++||+|||+.| |+||||||+|||++.++.+||+|||+|+..
T Consensus 105 ~~lv~e~~~-~~L~~~~~~-~~~l~~~~~~~i~~qil~aL~~LH~~g---ivHrDlkp~NILl~~~~~~kL~DFGla~~~ 179 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKT-PIFLTEEHIKTILYNLLLGENFIHESG---IIHRDLKPANCLLNQDCSVKVCDFGLARTI 179 (432)
T ss_dssp EEEEEECCS-EEHHHHHHS-SCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEEecCC-cCHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHeEECCCCCEEEccCCCcccc
Confidence 999999997 599999864 357999999999999999999999997 999999999999999999999999999865
Q ss_pred cccCcc---------------------eeeccccCccCCchHhh-hcCCCCcccchhhHHHHHHHHHhCCCCC
Q 004400 567 EEENTH---------------------ISTRVAGTIGYMAPEYA-MRGHLTEKADVYSFGIVALEIVSGRSNV 617 (756)
Q Consensus 567 ~~~~~~---------------------~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~slGv~l~elltg~~p~ 617 (756)
...... ..+..+||+.|+|||++ ....++.++||||+||++|||++|..||
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~ 252 (432)
T 3n9x_A 180 NSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH 252 (432)
T ss_dssp -------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence 433211 12456899999999986 4567999999999999999999854444
No 208
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=6.7e-39 Score=337.11 Aligned_cols=252 Identities=20% Similarity=0.334 Sum_probs=204.1
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC---------cccHHHHHHHHHHHHhCC-CCceeeEeeEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS---------KQGNREFINEIGMISALQ-HPNLVKLYGCCI 482 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~---------~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~ 482 (756)
..++|...+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 346899999999999999999995 578999999986532 122356789999999995 999999999999
Q ss_pred eCCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCc
Q 004400 483 EGNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGL 562 (756)
Q Consensus 483 ~~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGl 562 (756)
+++..++||||+++++|.+++... ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~ 170 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLTEK-VTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGF 170 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTT
T ss_pred cCCeEEEEEeccCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEcCCCcEEEecccc
Confidence 999999999999999999999754 47999999999999999999999997 99999999999999999999999999
Q ss_pred cccCcccCcceeeccccCccCCchHhhh------cCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcC
Q 004400 563 AKLDEEENTHISTRVAGTIGYMAPEYAM------RGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQG 636 (756)
Q Consensus 563 a~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~ 636 (756)
+........ .....||+.|+|||++. ...++.++||||||+++|||++|+.||........... ....
T Consensus 171 ~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~---~~~~- 244 (298)
T 1phk_A 171 SCQLDPGEK--LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRM---IMSG- 244 (298)
T ss_dssp CEECCTTCC--BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH---HHHT-
T ss_pred hhhcCCCcc--cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHH---HhcC-
Confidence 986544322 23457899999999986 34688999999999999999999999976554332221 1111
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 637 KLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
... ... .. .......+.+++.+||+.||++||++.|+++
T Consensus 245 ~~~-~~~-~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 245 NYQ-FGS-PE----WDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CCC-CCT-TT----GGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred Ccc-cCc-cc----ccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 110 000 00 0112334889999999999999999999976
No 209
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=6.2e-40 Score=356.25 Aligned_cols=254 Identities=10% Similarity=0.008 Sum_probs=183.4
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCc---ccHHHHHHHHHHHHhC--CCCceeeEe-------eEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSK---QGNREFINEIGMISAL--QHPNLVKLY-------GCC 481 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l--~h~niv~l~-------~~~ 481 (756)
..+|...+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|+.+++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 45688999999999999999994 5789999999976532 2345677785544444 699988855 555
Q ss_pred EeC-----------------CeEEEEEEecCCCCHHHHHHhcCCCCCHHHH------HHHHHHHHHHHHHHHcCCCCCeE
Q 004400 482 IEG-----------------NQLLLIYEYLENNSLARALFEHRLKLDWPTR------RRICLGIARGLAYLHGESRIKVV 538 (756)
Q Consensus 482 ~~~-----------------~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~------~~i~~~ia~~L~~LH~~g~~~ii 538 (756)
..+ ...++|||||+ |+|.+++......+.+..+ ..++.||+.||+|||++| |+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~---iv 216 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKG---LV 216 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT---EE
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCC---Cc
Confidence 443 33899999999 8999999865555677777 788899999999999997 99
Q ss_pred cCCCCCCceEecCCCCEEEccCCccccCcccCcceeeccccCccCCchHhhhc--CCCCcccchhhHHHHHHHHHhCCCC
Q 004400 539 HRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMR--GHLTEKADVYSFGIVALEIVSGRSN 616 (756)
Q Consensus 539 H~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slGv~l~elltg~~p 616 (756)
||||||+|||++.++.+||+|||+++..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.|
T Consensus 217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~P 292 (371)
T 3q60_A 217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGTR----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLP 292 (371)
T ss_dssp ETTCSGGGEEECTTSCEEECCGGGEEETTCE----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCS
T ss_pred cCcCCHHHEEECCCCCEEEEecceeeecCCC----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999865432 123567799999999987 6799999999999999999999999
Q ss_pred CCccchhhHHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 617 VTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
|..........|. .......................+.+++.+||+.||++|||+.|+++
T Consensus 293 f~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 293 FGLVTPGIKGSWK-----RPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp TTBCCTTCTTCCC-----BCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CCCcCcccccchh-----hhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 9665322111110 00000000001100111122345889999999999999999999865
No 210
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=1.1e-38 Score=352.45 Aligned_cols=202 Identities=23% Similarity=0.341 Sum_probs=175.0
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhC------CCCceeeEeeEEEeCCeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISAL------QHPNLVKLYGCCIEGNQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~~~ 487 (756)
..+|+..+.||+|+||.||+|. ..+++.||||++... ......+.+|+.+++.+ +|+||+++++++...+..
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 4578999999999999999998 456899999999653 33346678888888877 577999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC--EEEccCCccc
Q 004400 488 LLIYEYLENNSLARALFEHR-LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN--SKISDFGLAK 564 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~--~kl~DFGla~ 564 (756)
++||||+. ++|.+++.... ..+++..+..++.||+.||+|||+.+ |+||||||+|||++.++. +||+|||+++
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NILl~~~~~~~vkL~DFG~a~ 250 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNR---IIHCDLKPENILLKQQGRSGIKVIDFGSSC 250 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHT---EECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEccCCCcceEEeecccce
Confidence 99999996 58999887543 45999999999999999999999996 999999999999999987 9999999997
Q ss_pred cCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhH
Q 004400 565 LDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYL 625 (756)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 625 (756)
..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...+....
T Consensus 251 ~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~ 307 (429)
T 3kvw_A 251 YEHQR----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQ 307 (429)
T ss_dssp ETTCC----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred ecCCc----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHH
Confidence 54432 2345789999999999999999999999999999999999999977665443
No 211
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=8.5e-39 Score=334.98 Aligned_cols=250 Identities=27% Similarity=0.401 Sum_probs=199.2
Q ss_pred cCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEe----CCeEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIE----GNQLL 488 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~ 488 (756)
+.|...+.||+|+||.||+|.. .++..||+|.+... .....+.+.+|+.++++++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 4577888999999999999984 57889999998654 23345678999999999999999999999876 45689
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEec-CCCCEEEccCCccccCc
Q 004400 489 LIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLD-KDLNSKISDFGLAKLDE 567 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~-~~~~~kl~DFGla~~~~ 567 (756)
+||||+++|+|.+++... ..+++..+..++.|++.||+|||+.+ .+|+||||||+||+++ .++.+||+|||++....
T Consensus 106 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~ 183 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR 183 (290)
T ss_dssp EEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred EEEEecCCCCHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHcCC-CCEEECCCCHHHEEEECCCCCEEEeeCCCccccc
Confidence 999999999999999754 47899999999999999999999884 3499999999999998 78899999999997544
Q ss_pred ccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 568 EENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
... .....||+.|+|||++. +.++.++||||||+++|+|++|+.||......... ...... .......+
T Consensus 184 ~~~---~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~--~~~~~~-~~~~~~~~---- 252 (290)
T 1t4h_A 184 ASF---AKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQI--YRRVTS-GVKPASFD---- 252 (290)
T ss_dssp TTS---BEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHH--HHHHTT-TCCCGGGG----
T ss_pred ccc---cccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHH--HHHHhc-cCCccccC----
Confidence 332 23457999999999876 56999999999999999999999999654322211 111111 11111111
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
...+ ..+.+++.+||+.||.+|||+.|+++.
T Consensus 253 ~~~~----~~l~~li~~~l~~dp~~Rps~~ell~h 283 (290)
T 1t4h_A 253 KVAI----PEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp GCCC----HHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred CCCC----HHHHHHHHHHccCChhhCCCHHHHhhC
Confidence 1112 248899999999999999999999863
No 212
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=345.35 Aligned_cols=258 Identities=22% Similarity=0.375 Sum_probs=202.9
Q ss_pred HhhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
...++|+..+.||+|+||.||+|...+ .||+|.+.... ....+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 30 i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv 107 (319)
T 2y4i_B 30 IPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAII 107 (319)
T ss_dssp SCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEE
T ss_pred CCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEE
Confidence 345789999999999999999998753 59999987542 22345678899999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++++|.+++......+++..+..++.|++.||+|||+.+ |+||||||+||+++ ++.+||+|||+++......
T Consensus 108 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~ 183 (319)
T 2y4i_B 108 TSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKG---ILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQ 183 (319)
T ss_dssp CBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTT---CCCCCCCSTTEEEC---CCEECCCSCCC------
T ss_pred eecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChhhEEEe-CCCEEEeecCCcccccccc
Confidence 9999999999999876667999999999999999999999997 99999999999998 6799999999987643211
Q ss_pred ----cceeeccccCccCCchHhhhc---------CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc
Q 004400 571 ----THISTRVAGTIGYMAPEYAMR---------GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK 637 (756)
Q Consensus 571 ----~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 637 (756)
........||+.|+|||++.. ..++.++||||||+++|||++|+.||........... . ..+.
T Consensus 184 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~---~-~~~~ 259 (319)
T 2y4i_B 184 AGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQ---M-GTGM 259 (319)
T ss_dssp ----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHH---H-HTTC
T ss_pred ccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH---h-ccCC
Confidence 111233468999999999874 4578999999999999999999999976554332211 1 1111
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 638 LMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
...... ..++ ..+.+++.+||+.||++|||+.++++.|+.+..
T Consensus 260 ~~~~~~----~~~~----~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~ 302 (319)
T 2y4i_B 260 KPNLSQ----IGMG----KEISDILLFCWAFEQEERPTFTKLMDMLEKLPK 302 (319)
T ss_dssp CCCCCC----SSCC----TTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC--
T ss_pred CCCCCc----CCCC----HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence 111111 1122 238899999999999999999999999997654
No 213
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=4.5e-39 Score=348.50 Aligned_cols=262 Identities=22% Similarity=0.342 Sum_probs=203.6
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeC-----CeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEG-----NQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 487 (756)
.++|...+.||+|+||.||+|. ..+++.||||++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 4579999999999999999998 4578899999997533 23346789999999999999999999999765 468
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
++||||+++ +|.+++... .+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++...
T Consensus 106 ~iv~e~~~~-~L~~~l~~~--~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~ 179 (364)
T 3qyz_A 106 YIVQDLMET-DLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVAD 179 (364)
T ss_dssp EEEEECCSE-EHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEcccCc-CHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChHhEEECCCCCEEEEeCcceEecC
Confidence 999999984 899988653 6899999999999999999999997 9999999999999999999999999998665
Q ss_pred ccCcce--eeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccc----
Q 004400 568 EENTHI--STRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLME---- 640 (756)
Q Consensus 568 ~~~~~~--~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~---- 640 (756)
...... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||...+...................
T Consensus 180 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~ 259 (364)
T 3qyz_A 180 PDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCI 259 (364)
T ss_dssp GGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTC
T ss_pred CCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHh
Confidence 432221 2345799999999987654 589999999999999999999999977655443332221111100000
Q ss_pred -------ccccCC-CCCCC-----HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 641 -------LVDTNP-GSNFD-----KEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 641 -------~~~~~~-~~~~~-----~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.....+ ....+ +.....+.+++.+|++.||++|||+.|+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 314 (364)
T 3qyz_A 260 INLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH 314 (364)
T ss_dssp CCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 000000 00000 1112358899999999999999999999864
No 214
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=7.6e-39 Score=341.23 Aligned_cols=263 Identities=25% Similarity=0.383 Sum_probs=203.5
Q ss_pred HhhcCccccCcccCCCCccEEEeec--cCCcEEEEEEccccCc--ccHHHHHHHHHHHHhC---CCCceeeEeeEEE---
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGLL--ADGTAIAVKQLSSKSK--QGNREFINEIGMISAL---QHPNLVKLYGCCI--- 482 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l---~h~niv~l~~~~~--- 482 (756)
.+.++|...+.||+|+||.||+|+. .+|+.||+|++..... .....+.+|+.+++.+ +||||++++++|.
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 3567899999999999999999996 4688999999865322 2224567788777766 8999999999997
Q ss_pred --eCCeEEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEcc
Q 004400 483 --EGNQLLLIYEYLENNSLARALFEHR-LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISD 559 (756)
Q Consensus 483 --~~~~~~lV~e~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~D 559 (756)
.....++||||++ |+|.+++.... ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~g---i~H~dlkp~Nili~~~~~~kl~D 163 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLAD 163 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECS
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHHHeEEcCCCCEEEec
Confidence 4567899999998 69999997543 35899999999999999999999997 99999999999999999999999
Q ss_pred CCccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccc
Q 004400 560 FGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLM 639 (756)
Q Consensus 560 FGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 639 (756)
||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......................
T Consensus 164 fg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~ 241 (326)
T 1blx_A 164 FGLARIYSFQM--ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEE 241 (326)
T ss_dssp CCSCCCCCGGG--GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGG
T ss_pred CcccccccCCC--CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcc
Confidence 99998655332 2234578999999999999999999999999999999999999997765544333222111110000
Q ss_pred cc----------cc---cCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 640 EL----------VD---TNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 640 ~~----------~~---~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
.. .. ......+.......+.+++.+||+.||++||++.|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 242 DWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp GSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 00 00 00000111122335889999999999999999999985
No 215
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-39 Score=344.53 Aligned_cols=255 Identities=26% Similarity=0.413 Sum_probs=200.2
Q ss_pred HHHhhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhC-CCCceeeEeeEEEe-----
Q 004400 411 IKAATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISAL-QHPNLVKLYGCCIE----- 483 (756)
Q Consensus 411 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~----- 483 (756)
+....++|...+.||+|+||.||+|+. .+++.||||++... ......+.+|+.+++++ +||||+++++++..
T Consensus 19 l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~ 97 (326)
T 2x7f_A 19 LRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-GDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG 97 (326)
T ss_dssp CCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--C
T ss_pred ccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecC-cccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcc
Confidence 345678899999999999999999995 57899999998653 33457889999999999 89999999999987
Q ss_pred -CCeEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCC
Q 004400 484 -GNQLLLIYEYLENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFG 561 (756)
Q Consensus 484 -~~~~~lV~e~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFG 561 (756)
.+..++||||+++|+|.+++... ...+++..+..++.||+.||+|||+.| |+||||||+||+++.++.+||+|||
T Consensus 98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg 174 (326)
T 2x7f_A 98 MDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFG 174 (326)
T ss_dssp CCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEECCCT
T ss_pred ccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCcHHHEEEcCCCCEEEeeCc
Confidence 56899999999999999999754 357899999999999999999999997 9999999999999999999999999
Q ss_pred ccccCcccCcceeeccccCccCCchHhhh-----cCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcC
Q 004400 562 LAKLDEEENTHISTRVAGTIGYMAPEYAM-----RGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQG 636 (756)
Q Consensus 562 la~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~ 636 (756)
++........ ......||+.|+|||++. ...++.++|||||||++|||++|+.||........... ... .
T Consensus 175 ~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~---~~~-~ 249 (326)
T 2x7f_A 175 VSAQLDRTVG-RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFL---IPR-N 249 (326)
T ss_dssp TTC--------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH---HHH-S
T ss_pred CceecCcCcc-ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHH---hhc-C
Confidence 9986543221 123457999999999987 56789999999999999999999999966554332211 111 1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 637 KLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..... ....++ ..+.+++.+||+.||.+||++.++++.
T Consensus 250 ~~~~~----~~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~h 287 (326)
T 2x7f_A 250 PAPRL----KSKKWS----KKFQSFIESCLVKNHSQRPATEQLMKH 287 (326)
T ss_dssp CCCCC----SCSCSC----HHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred ccccC----CccccC----HHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 11111 111223 348899999999999999999999873
No 216
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=3.4e-39 Score=343.43 Aligned_cols=252 Identities=22% Similarity=0.346 Sum_probs=196.2
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCc--------ccHHHHHHHHHHHHhCCCCceeeEeeEEEeC
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSK--------QGNREFINEIGMISALQHPNLVKLYGCCIEG 484 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 484 (756)
..++|...+.||+|+||.||+|.. .+++.||||.+..... .....+.+|++++++++||||+++++++..+
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 346789999999999999999984 5689999999865321 1224588999999999999999999998766
Q ss_pred CeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC---EEEccCC
Q 004400 485 NQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN---SKISDFG 561 (756)
Q Consensus 485 ~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~---~kl~DFG 561 (756)
. .++||||+++|+|.+++... ..+++..+..++.||+.||+|||+.+ |+||||||+||+++.++. +||+|||
T Consensus 88 ~-~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg 162 (322)
T 2ycf_A 88 D-YYIVLELMEGGELFDKVVGN-KRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFG 162 (322)
T ss_dssp S-EEEEEECCTTEETHHHHSTT-CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSSSCCEEECCCT
T ss_pred c-eEEEEecCCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEecCCCCCeEEEccCc
Confidence 5 89999999999999988644 47999999999999999999999997 999999999999987654 9999999
Q ss_pred ccccCcccCcceeeccccCccCCchHhhh---cCCCCcccchhhHHHHHHHHHhCCCCCCccchh-hHHHHHHHHHhcCc
Q 004400 562 LAKLDEEENTHISTRVAGTIGYMAPEYAM---RGHLTEKADVYSFGIVALEIVSGRSNVTKEDMF-YLLDWALVLKEQGK 637 (756)
Q Consensus 562 la~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~-~~~~~~~~~~~~~~ 637 (756)
+++...... ......||+.|+|||++. ...++.++|||||||++|||++|+.||...... ..... .. .+.
T Consensus 163 ~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~---~~-~~~ 236 (322)
T 2ycf_A 163 HSKILGETS--LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQ---IT-SGK 236 (322)
T ss_dssp TCEECCCCH--HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHH---HH-HTC
T ss_pred cceeccccc--ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHH---HH-hCc
Confidence 998654322 123457999999999975 456899999999999999999999999654322 11111 11 111
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 638 LMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..... .....+ ...+.+++.+||+.||++||++.++++.
T Consensus 237 ~~~~~--~~~~~~----~~~~~~li~~~l~~dP~~Rps~~~~l~h 275 (322)
T 2ycf_A 237 YNFIP--EVWAEV----SEKALDLVKKLLVVDPKARFTTEEALRH 275 (322)
T ss_dssp CCCCH--HHHTTS----CHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred cccCc--hhhhhc----CHHHHHHHHHHcccCHhhCCCHHHHhhC
Confidence 10000 000112 2358899999999999999999999763
No 217
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=3.8e-39 Score=348.66 Aligned_cols=258 Identities=24% Similarity=0.364 Sum_probs=186.3
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeC------C
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEG------N 485 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~ 485 (756)
.++|...+.||+|+||.||+|. ..+|+.||||++... .....+.+.+|+.+++.++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 3688999999999999999998 567899999999653 233456788999999999999999999999754 5
Q ss_pred eEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCcccc
Q 004400 486 QLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKL 565 (756)
Q Consensus 486 ~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~ 565 (756)
..++|+||+ +++|.+++.. ..+++..+..++.||++||+|||+.| |+||||||+||+++.++.+||+|||+++.
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kL~DFG~a~~ 181 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARH 181 (367)
T ss_dssp CCEEEEECC-CEECC-------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECC------
T ss_pred eEEEEeccc-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHhhEEECCCCCEEEeecccccc
Confidence 679999999 6899888864 47999999999999999999999997 99999999999999999999999999986
Q ss_pred CcccCcceeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccc-----
Q 004400 566 DEEENTHISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLM----- 639 (756)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~----- 639 (756)
.... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.+..................
T Consensus 182 ~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~ 257 (367)
T 2fst_X 182 TADE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKI 257 (367)
T ss_dssp -------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTC
T ss_pred cccc----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHh
Confidence 5432 234579999999999987 679999999999999999999999997766544333222211110000
Q ss_pred ---------cccccCCCCCCC---HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 640 ---------ELVDTNPGSNFD---KEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 640 ---------~~~~~~~~~~~~---~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
..+...+...+. ......+.+++.+|++.||++|||+.|+++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h 312 (367)
T 2fst_X 258 SSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH 312 (367)
T ss_dssp CCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred hhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence 000000000000 0112348899999999999999999999864
No 218
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=6.8e-39 Score=347.89 Aligned_cols=257 Identities=21% Similarity=0.323 Sum_probs=193.7
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC------
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEGN------ 485 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 485 (756)
.++|...+.||+|+||.||+|. ..+++.||||++... .....+.+.+|+.+++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 3578999999999999999998 457899999998653 2333467889999999999999999999998765
Q ss_pred eEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCcccc
Q 004400 486 QLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKL 565 (756)
Q Consensus 486 ~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~ 565 (756)
..++||||+++ +|.+.+. ..+++..+..++.||+.||+|||++| |+||||||+|||++.++.+||+|||+++.
T Consensus 104 ~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~ 176 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQ---MELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLART 176 (371)
T ss_dssp EEEEEEECCSE-EHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred ceEEEEEcCCC-CHHHHHh---hccCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEEEeecccc
Confidence 78999999985 7888774 35899999999999999999999997 99999999999999999999999999986
Q ss_pred CcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcc-cc----
Q 004400 566 DEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKL-ME---- 640 (756)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~-~~---- 640 (756)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+...... ......+.. .+
T Consensus 177 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~--~i~~~~~~~~~~~~~~ 252 (371)
T 2xrw_A 177 AGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWN--KVIEQLGTPCPEFMKK 252 (371)
T ss_dssp ---------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH--HHHC-CCCCCHHHHTT
T ss_pred ccccc--ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHH--HHHHHhCCCCHHHHHH
Confidence 54322 2234679999999999999899999999999999999999999997765433221 111100000 00
Q ss_pred -------ccccCC---------------CCC---CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 641 -------LVDTNP---------------GSN---FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 641 -------~~~~~~---------------~~~---~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.....+ ... ........+.+++.+|++.||++|||+.|+++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h 319 (371)
T 2xrw_A 253 LQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH 319 (371)
T ss_dssp SCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred hhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence 000000 000 011235578999999999999999999999874
No 219
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=5.5e-39 Score=354.11 Aligned_cols=257 Identities=24% Similarity=0.289 Sum_probs=194.5
Q ss_pred cCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeC------CeEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEG------NQLL 488 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~~~ 488 (756)
.+|...+.||+|+||.||+|+. .+|+.||||++..... .+.+|+++++.++|||||+++++|... ...+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 4688889999999999999995 5689999999865322 234799999999999999999998642 2467
Q ss_pred EEEEecCCCCHHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCC-CCEEEccCCccc
Q 004400 489 LIYEYLENNSLARALF---EHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKD-LNSKISDFGLAK 564 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~---~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~-~~~kl~DFGla~ 564 (756)
+||||+++ ++.+.+. .....+++..+..++.||++||+|||+.+ |+||||||+|||++.+ +.+||+|||+++
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NILl~~~~~~~kl~DFG~a~ 205 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAK 205 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChhhEEEeCCCCeEEeccchhhh
Confidence 99999986 5665554 34568999999999999999999999986 9999999999999965 568999999998
Q ss_pred cCcccCcceeeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhc--------
Q 004400 565 LDEEENTHISTRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQ-------- 635 (756)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~-------- 635 (756)
....... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||.+.+..............
T Consensus 206 ~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~ 283 (420)
T 1j1b_A 206 QLVRGEP--NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIRE 283 (420)
T ss_dssp ECCTTCC--CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHH
T ss_pred hcccCCC--ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHh
Confidence 6543322 2345789999999999764 7999999999999999999999999776544332211111110
Q ss_pred --CccccccccCCCC-----CCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 636 --GKLMELVDTNPGS-----NFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 636 --~~~~~~~~~~~~~-----~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
....+...+.... .+.......+.+++.+||+.||.+||++.|+++.
T Consensus 284 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h 337 (420)
T 1j1b_A 284 MNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH 337 (420)
T ss_dssp HCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred hChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence 0001100000000 0111123458899999999999999999999853
No 220
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=2.9e-39 Score=353.38 Aligned_cols=259 Identities=23% Similarity=0.293 Sum_probs=196.3
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCC------eEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGN------QLL 488 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~~~ 488 (756)
..+|...+.||+|+||.||+|+...+..||+|++..... ...+|+++++.++||||++++++|...+ ..+
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 346889999999999999999987777799998854322 2236999999999999999999996543 388
Q ss_pred EEEEecCCCCHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEec-CCCCEEEccCCcccc
Q 004400 489 LIYEYLENNSLARALF--EHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLD-KDLNSKISDFGLAKL 565 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~--~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~-~~~~~kl~DFGla~~ 565 (756)
+||||++++.+..... .....+++..+..++.||++||+|||+.| |+||||||+|||++ .++.+||+|||+++.
T Consensus 115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~kL~DFG~a~~ 191 (394)
T 4e7w_A 115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG---ICHRDIKPQNLLLDPPSGVLKLIDFGSAKI 191 (394)
T ss_dssp EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEcCCCCcEEEeeCCCccc
Confidence 9999999865444332 33567999999999999999999999997 99999999999999 789999999999986
Q ss_pred CcccCcceeeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc-------
Q 004400 566 DEEENTHISTRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK------- 637 (756)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~------- 637 (756)
...... .....||+.|+|||++.+. .++.++||||+||++|||++|+.||.+.+................
T Consensus 192 ~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~ 269 (394)
T 4e7w_A 192 LIAGEP--NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTM 269 (394)
T ss_dssp CCTTCC--CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred ccCCCC--CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhh
Confidence 543322 2345789999999999764 599999999999999999999999977665433322211111000
Q ss_pred ---cccccccCCC-C----CCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 638 ---LMELVDTNPG-S----NFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 638 ---~~~~~~~~~~-~----~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
......+... . .+.......+.+++.+||+.||++|||+.|+++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 322 (394)
T 4e7w_A 270 NPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH 322 (394)
T ss_dssp CGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred ChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence 0000000000 0 0111123358999999999999999999999864
No 221
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.2e-39 Score=349.60 Aligned_cols=251 Identities=23% Similarity=0.387 Sum_probs=198.6
Q ss_pred HhhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccC-cccHHHHHHHHHH-HHhCCCCceeeEeeEEEeCCeEEE
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKS-KQGNREFINEIGM-ISALQHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~-~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~l 489 (756)
...++|+..+.||+|+||.||+|+ ..+|+.||||++.... .....++..|..+ ++.++||||+++++++.+++..++
T Consensus 48 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~l 127 (340)
T 3an0_A 48 VKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWI 127 (340)
T ss_dssp CCSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEE
T ss_pred EehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEE
Confidence 345789999999999999999999 4679999999997642 2234456666665 777899999999999999999999
Q ss_pred EEEecCCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCCeEcCCCCCCceEecCCCCEEEccCCcccc
Q 004400 490 IYEYLENNSLARALFE---HRLKLDWPTRRRICLGIARGLAYLHGE-SRIKVVHRDIKATNVLLDKDLNSKISDFGLAKL 565 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~---~~~~l~~~~~~~i~~~ia~~L~~LH~~-g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~ 565 (756)
||||+++ +|.+++.. ....+++..+..++.||+.||+|||++ | |+||||||+||+++.++.+||+|||+++.
T Consensus 128 v~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~ 203 (340)
T 3an0_A 128 CMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS---VIHRDVKPSNVLINALGQVKMCDFGISGY 203 (340)
T ss_dssp EECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHTC---CCCCSCCSTTEEECSTTCEEECCCSHHHH
T ss_pred EHHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeeCCCcee
Confidence 9999986 99888863 556899999999999999999999986 6 99999999999999999999999999976
Q ss_pred CcccCcceeeccccCccCCchHhhhc----CCCCcccchhhHHHHHHHHHhCCCCCCccch-hhHHHHHHHHHhcCcccc
Q 004400 566 DEEENTHISTRVAGTIGYMAPEYAMR----GHLTEKADVYSFGIVALEIVSGRSNVTKEDM-FYLLDWALVLKEQGKLME 640 (756)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~~Dv~slGv~l~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~ 640 (756)
..... ......||+.|+|||++.. ..++.++|||||||++|||++|+.||..... ..... ...... ...
T Consensus 204 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~---~~~~~~-~~~ 277 (340)
T 3an0_A 204 LVDSV--AKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLK---QVVEEP-SPQ 277 (340)
T ss_dssp HSCHH--HHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHH---HHHHSC-CCC
T ss_pred ccccc--ccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHH---HHhcCC-CCC
Confidence 54321 1223579999999999743 4689999999999999999999999965322 11111 111111 111
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 641 LVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 641 ~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
.. ...+ ...+.+++.+||+.||++||++.|+++
T Consensus 278 ~~----~~~~----~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 278 LP----ADKF----SAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp CC----GGGS----CHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CC----cccC----CHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 10 0112 234889999999999999999999976
No 222
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=6.8e-39 Score=337.55 Aligned_cols=252 Identities=27% Similarity=0.438 Sum_probs=195.1
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEe----------
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIE---------- 483 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~---------- 483 (756)
.++|+..+.||+|+||.||+|+. .+++.||||.+... ....+.+.+|+.++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 45789999999999999999994 57999999998643 3345678999999999999999999999865
Q ss_pred ---CCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccC
Q 004400 484 ---GNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDF 560 (756)
Q Consensus 484 ---~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DF 560 (756)
....++||||+++|+|.+++......+++..+..++.|++.||+|||+++ |+||||||+||+++.++.+||+||
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dlkp~Nil~~~~~~~kl~df 160 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDF 160 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCC
T ss_pred cccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCC---eecccCCHHhEEEcCCCCEEEeeC
Confidence 35789999999999999999877667889999999999999999999997 999999999999999999999999
Q ss_pred CccccCcccC-------------cceeeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCCCCCCccchhhHH
Q 004400 561 GLAKLDEEEN-------------THISTRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLL 626 (756)
Q Consensus 561 Gla~~~~~~~-------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 626 (756)
|+++...... ........||+.|+|||++.+. .++.++|||||||++|||++ ||...... .
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~--~ 235 (303)
T 1zy4_A 161 GLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMER--V 235 (303)
T ss_dssp CCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHH--H
T ss_pred cchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhH--H
Confidence 9998654321 1122345789999999999864 68999999999999999998 55332111 1
Q ss_pred HHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 627 DWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
........ .. .. ....++......+.+++.+||+.||.+|||+.++++.
T Consensus 236 ~~~~~~~~-~~-~~-----~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 284 (303)
T 1zy4_A 236 NILKKLRS-VS-IE-----FPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS 284 (303)
T ss_dssp HHHHHHHS-TT-CC-----CCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHHHhccc-cc-cc-----cCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence 11111111 00 00 1111222333458899999999999999999999874
No 223
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=5.6e-39 Score=352.02 Aligned_cols=259 Identities=21% Similarity=0.316 Sum_probs=201.2
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCC--------CCceeeEeeEEE---
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQ--------HPNLVKLYGCCI--- 482 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~--- 482 (756)
.++|...+.||+|+||.||+|+ ..+++.||||++... ....+.+.+|+.+++.++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 3678999999999999999998 567899999999643 334567889999999985 788999999998
Q ss_pred -eCCeEEEEEEecCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCCeEcCCCCCCceEecCCC------
Q 004400 483 -EGNQLLLIYEYLENNSLARALFE-HRLKLDWPTRRRICLGIARGLAYLHGE-SRIKVVHRDIKATNVLLDKDL------ 553 (756)
Q Consensus 483 -~~~~~~lV~e~~~~gsL~~~l~~-~~~~l~~~~~~~i~~~ia~~L~~LH~~-g~~~iiH~Dikp~Nill~~~~------ 553 (756)
+....++||||+ +++|.+++.. ....+++..+..++.||+.||+|||++ | |+||||||+|||++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~g---ivHrDikp~NIll~~~~~~~~~~ 190 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCR---IIHTDIKPENILLSVNEQYIRRL 190 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECCCCSGGGEEECCCHHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHeeEeccchhhhhh
Confidence 456899999999 5566665554 345799999999999999999999998 6 99999999999999775
Q ss_pred -------------------------------------------CEEEccCCccccCcccCcceeeccccCccCCchHhhh
Q 004400 554 -------------------------------------------NSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAM 590 (756)
Q Consensus 554 -------------------------------------------~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~ 590 (756)
.+||+|||+++..... .....||+.|+|||++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----~~~~~gt~~y~aPE~~~ 266 (397)
T 1wak_A 191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----FTEDIQTRQYRSLEVLI 266 (397)
T ss_dssp HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----SCSCCSCGGGCCHHHHH
T ss_pred hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----CccCCCCCcccCChhhc
Confidence 7999999999865433 23357899999999999
Q ss_pred cCCCCcccchhhHHHHHHHHHhCCCCCCccchhh------HHHHHHHHHhc---------Ccccccc----------ccC
Q 004400 591 RGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFY------LLDWALVLKEQ---------GKLMELV----------DTN 645 (756)
Q Consensus 591 ~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~------~~~~~~~~~~~---------~~~~~~~----------~~~ 645 (756)
+..++.++|||||||++|||++|+.||....... ........... ....... ...
T Consensus 267 ~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (397)
T 1wak_A 267 GSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLK 346 (397)
T ss_dssp TSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCC
T ss_pred CCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccC
Confidence 9999999999999999999999999996543211 11111010000 0000000 000
Q ss_pred C---------CCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 646 P---------GSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 646 ~---------~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
+ ...++......+.+++.+||+.||++|||+.|+++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 392 (397)
T 1wak_A 347 PWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH 392 (397)
T ss_dssp CCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred CcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence 0 012356667789999999999999999999999863
No 224
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=332.81 Aligned_cols=250 Identities=22% Similarity=0.316 Sum_probs=199.7
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC----cccHHHHHHHHHHHHhCCCCceeeEeeEEE--eCCeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS----KQGNREFINEIGMISALQHPNLVKLYGCCI--EGNQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~ 487 (756)
.++|...+.||+|+||.||+|.. .+++.||+|++.... ......+.+|++++++++||||+++++++. +....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 46899999999999999999995 578999999997542 234577999999999999999999999985 45678
Q ss_pred EEEEEecCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 488 LLIYEYLENNSLARALFE-HRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~-~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
++||||++++ |.+++.. ....+++..+..++.|++.||+|||+++ |+||||||+||+++.++.+||+|||++...
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~ 159 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAEAL 159 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEcCCCcEEeecccccccc
Confidence 9999999987 7777654 3457999999999999999999999997 999999999999999999999999999865
Q ss_pred cccC-cceeeccccCccCCchHhhhcCC--CCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccc
Q 004400 567 EEEN-THISTRVAGTIGYMAPEYAMRGH--LTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVD 643 (756)
Q Consensus 567 ~~~~-~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (756)
.... ........||+.|+|||++.+.. ++.++||||||+++|||++|+.||...+....... ... ... .
T Consensus 160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~---i~~-~~~-~--- 231 (305)
T 2wtk_C 160 HPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFEN---IGK-GSY-A--- 231 (305)
T ss_dssp CTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH---HHH-CCC-C---
T ss_pred CccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHH---Hhc-CCC-C---
Confidence 4322 22233457999999999997644 47899999999999999999999976654433221 111 111 0
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 644 TNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 644 ~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
....++ ..+.+++.+||+.||++||++.|+++.
T Consensus 232 --~~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 232 --IPGDCG----PPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp --CCSSSC----HHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred --CCCccC----HHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 111223 348899999999999999999999864
No 225
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=3.1e-38 Score=340.53 Aligned_cols=262 Identities=21% Similarity=0.304 Sum_probs=201.3
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC-cccHHHHHHHHHHHHhCCCCceeeEeeEEEeC-----CeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS-KQGNREFINEIGMISALQHPNLVKLYGCCIEG-----NQL 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 487 (756)
.++|...+.||+|+||.||+|+. .+|+.||||.+.... ......+.+|++++++++||||+++++++..+ ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 46899999999999999999995 478999999996532 33346788999999999999999999998764 678
Q ss_pred EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 488 LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
++||||+. |+|.+++.. ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++...
T Consensus 90 ~lv~e~~~-~~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 163 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVIST--QMLSDDHIQYFIYQTLRAVKVLHGSN---VIHRDLKPSNLLINSNCDLKVCDFGLARIID 163 (353)
T ss_dssp EEEECCCS-EEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEeccC-ccHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence 99999998 589998865 36899999999999999999999997 9999999999999999999999999998654
Q ss_pred ccCcc---------eeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc
Q 004400 568 EENTH---------ISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK 637 (756)
Q Consensus 568 ~~~~~---------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 637 (756)
..... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...+................
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~ 243 (353)
T 2b9h_A 164 ESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPH 243 (353)
T ss_dssp ----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred cccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCc
Confidence 32211 1223578999999998865 6789999999999999999999999977654433222211111100
Q ss_pred cc------------cccccCCC-CCC-----CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 638 LM------------ELVDTNPG-SNF-----DKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 638 ~~------------~~~~~~~~-~~~-----~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.. +.....+. ... .+.....+.+++.+||+.||++|||+.|+++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (353)
T 2b9h_A 244 SDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH 306 (353)
T ss_dssp STTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred hhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 00 00000000 000 01123358899999999999999999999873
No 226
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=2.2e-38 Score=331.40 Aligned_cols=251 Identities=23% Similarity=0.389 Sum_probs=204.0
Q ss_pred hhcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
..++|...+.||+|+||.||+|+. .+++.||+|++... .......+.+|++++++++||||+++++++.+.+..++|
T Consensus 20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 99 (287)
T 2wei_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (287)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence 456899999999999999999995 47899999998654 233567899999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCC---CCEEEccCCccccCc
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKD---LNSKISDFGLAKLDE 567 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~---~~~kl~DFGla~~~~ 567 (756)
|||+++++|.+++.... .+++..+..++.|++.||+|||+.| |+||||||+||+++.+ +.+||+|||+++...
T Consensus 100 ~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~ 175 (287)
T 2wei_A 100 GELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175 (287)
T ss_dssp ECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBC
T ss_pred EEccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChhhEEEecCCCcccEEEeccCcceeec
Confidence 99999999999887543 7899999999999999999999997 9999999999999764 469999999998654
Q ss_pred ccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCC
Q 004400 568 EENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG 647 (756)
Q Consensus 568 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (756)
.... .....||+.|+|||.+.+ .++.++||||||+++|+|++|+.||...+....... ... +.... +....
T Consensus 176 ~~~~--~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~---~~~-~~~~~--~~~~~ 246 (287)
T 2wei_A 176 QNTK--MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKR---VET-GKYAF--DLPQW 246 (287)
T ss_dssp CCSS--CSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH---HHH-CCCCC--CSGGG
T ss_pred CCCc--cccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHH---HHc-CCCCC--Cchhh
Confidence 4322 223468999999998865 589999999999999999999999977654433221 111 11110 00001
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 648 SNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 648 ~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
..++ ..+.+++.+|++.||++|||+.|+++
T Consensus 247 ~~~~----~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 247 RTIS----DDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp TTSC----HHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred hhcC----HHHHHHHHHHcccChhhCcCHHHHhc
Confidence 1223 34889999999999999999999987
No 227
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=1.9e-38 Score=343.17 Aligned_cols=265 Identities=22% Similarity=0.280 Sum_probs=192.0
Q ss_pred HHHhhcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCe---
Q 004400 411 IKAATNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQ--- 486 (756)
Q Consensus 411 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--- 486 (756)
.....++|...+.||+|+||.||+|+. .+|+.||||++.... .....+.+|++.++.++||||++++++|...+.
T Consensus 18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~ 96 (360)
T 3e3p_A 18 SRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDR 96 (360)
T ss_dssp HHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCT
T ss_pred chhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccccc
Confidence 445678999999999999999999995 578999999986532 233466788889999999999999999976433
Q ss_pred ----EEEEEEecCCCCHHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHHH--cCCCCCeEcCCCCCCceEecC-CCCEE
Q 004400 487 ----LLLIYEYLENNSLARALF---EHRLKLDWPTRRRICLGIARGLAYLH--GESRIKVVHRDIKATNVLLDK-DLNSK 556 (756)
Q Consensus 487 ----~~lV~e~~~~gsL~~~l~---~~~~~l~~~~~~~i~~~ia~~L~~LH--~~g~~~iiH~Dikp~Nill~~-~~~~k 556 (756)
.++||||+++ +|.+.+. .....+++..+..++.|++.||+||| +.| |+||||||+|||++. ++.+|
T Consensus 97 ~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~---ivH~Dlkp~NIll~~~~~~~k 172 (360)
T 3e3p_A 97 RDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN---VCHRDIKPHNVLVNEADGTLK 172 (360)
T ss_dssp TCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTC---CBCSCCCGGGEEEETTTTEEE
T ss_pred cceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCC---eecCcCCHHHEEEeCCCCcEE
Confidence 8999999987 4544443 34557899999999999999999999 775 999999999999997 89999
Q ss_pred EccCCccccCcccCcceeeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhc
Q 004400 557 ISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQ 635 (756)
Q Consensus 557 l~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 635 (756)
|+|||+++....... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||...+..............
T Consensus 173 l~Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~ 250 (360)
T 3e3p_A 173 LCDFGSAKKLSPSEP--NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGC 250 (360)
T ss_dssp ECCCTTCBCCCTTSC--CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCC
T ss_pred EeeCCCceecCCCCC--cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCC
Confidence 999999986654332 2345789999999998765 4899999999999999999999999776554433322111110
Q ss_pred C------------ccccccccCC------CCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 636 G------------KLMELVDTNP------GSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 636 ~------------~~~~~~~~~~------~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
. .......... ...........+.+++.+||+.||.+|||+.|+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 315 (360)
T 3e3p_A 251 PSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH 315 (360)
T ss_dssp CCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred CCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence 0 0000000000 001111234568999999999999999999999864
No 228
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=336.44 Aligned_cols=262 Identities=23% Similarity=0.336 Sum_probs=195.1
Q ss_pred hcCccccCcccCCCCccEEEeecc-CCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEE-----------
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCI----------- 482 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~----------- 482 (756)
.++|...+.||+|+||.||+|... +++.||+|++........+.+.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 357889999999999999999954 58999999987666666678999999999999999999999873
Q ss_pred ---eCCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEec-CCCCEEEc
Q 004400 483 ---EGNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLD-KDLNSKIS 558 (756)
Q Consensus 483 ---~~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~-~~~~~kl~ 558 (756)
+....++||||++ |+|.+++.. ..+++..+..++.|++.||+|||++| |+||||||+||+++ +++.+||+
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~kl~ 163 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQ--GPLLEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANLFINTEDLVLKIG 163 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTTEEEEC
T ss_pred cccccCceeEEeeccC-CCHHHHhhc--CCccHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCeEEEc
Confidence 4478899999998 699998854 46899999999999999999999997 99999999999997 56789999
Q ss_pred cCCccccCcccCcc--eeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhc
Q 004400 559 DFGLAKLDEEENTH--ISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQ 635 (756)
Q Consensus 559 DFGla~~~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 635 (756)
|||+++........ ......||..|+|||.+.. ..++.++|||||||++|||++|+.||..................
T Consensus 164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~ 243 (320)
T 2i6l_A 164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPV 243 (320)
T ss_dssp CCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCC
T ss_pred cCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCC
Confidence 99999876432221 1234567999999999876 67899999999999999999999999766543322211100000
Q ss_pred ----------Ccccccccc---CCCCC---CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 636 ----------GKLMELVDT---NPGSN---FDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 636 ----------~~~~~~~~~---~~~~~---~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
......... .+... ..+.....+.+++.+|++.||++|||+.|+++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (320)
T 2i6l_A 244 VHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH 306 (320)
T ss_dssp CCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred CchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence 000000000 00000 001123358899999999999999999999763
No 229
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=354.94 Aligned_cols=199 Identities=27% Similarity=0.440 Sum_probs=155.6
Q ss_pred cCccc-cCcccCCCCccEEEeecc---CCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeEEEe--CCeEEE
Q 004400 416 NNFAT-DNNIGEGGFGPVYKGLLA---DGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIE--GNQLLL 489 (756)
Q Consensus 416 ~~~~~-~~~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~l 489 (756)
+.|.. .++||+|+||.||+|+.. +++.||||++.... ....+.+|+.++++++|||||++++++.. +...++
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 44555 468999999999999954 57899999997542 23578899999999999999999999965 678999
Q ss_pred EEEecCCCCHHHHHHhc--------CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe----cCCCCEEE
Q 004400 490 IYEYLENNSLARALFEH--------RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL----DKDLNSKI 557 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~--------~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill----~~~~~~kl 557 (756)
||||+++ +|.+++... ...+++..+..++.||+.||+|||+.| |+||||||+|||+ +.++.+||
T Consensus 98 v~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl 173 (405)
T 3rgf_A 98 LFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKI 173 (405)
T ss_dssp EEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred EEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeCCCcCHHHeEEecCCCCCCcEEE
Confidence 9999975 787777521 124899999999999999999999997 9999999999999 77789999
Q ss_pred ccCCccccCcccCc--ceeeccccCccCCchHhhhcC-CCCcccchhhHHHHHHHHHhCCCCCCcc
Q 004400 558 SDFGLAKLDEEENT--HISTRVAGTIGYMAPEYAMRG-HLTEKADVYSFGIVALEIVSGRSNVTKE 620 (756)
Q Consensus 558 ~DFGla~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~ 620 (756)
+|||+++....... .......||+.|+|||++.+. .++.++|||||||++|||++|+.||...
T Consensus 174 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 239 (405)
T 3rgf_A 174 ADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR 239 (405)
T ss_dssp CCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred EECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence 99999987654322 223446799999999999874 5999999999999999999999999644
No 230
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=4.2e-39 Score=346.55 Aligned_cols=256 Identities=20% Similarity=0.320 Sum_probs=204.2
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCccc-----------------HHHHHHHHHHHHhCCCCceeeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQG-----------------NREFINEIGMISALQHPNLVKL 477 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~E~~~l~~l~h~niv~l 477 (756)
.++|...+.||+|+||.||+|.. +++.||||.+....... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999998 89999999986542211 1789999999999999999999
Q ss_pred eeEEEeCCeEEEEEEecCCCCHHHH------HHhc-CCCCCHHHHHHHHHHHHHHHHHHHc-CCCCCeEcCCCCCCceEe
Q 004400 478 YGCCIEGNQLLLIYEYLENNSLARA------LFEH-RLKLDWPTRRRICLGIARGLAYLHG-ESRIKVVHRDIKATNVLL 549 (756)
Q Consensus 478 ~~~~~~~~~~~lV~e~~~~gsL~~~------l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~-~g~~~iiH~Dikp~Nill 549 (756)
++++.+++..++||||+++|+|.++ +... ...+++..+..++.|++.||+|||+ .| |+||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN---ICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSC---EECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCC---EeecCCChHhEEE
Confidence 9999999999999999999999988 5432 4679999999999999999999998 76 9999999999999
Q ss_pred cCCCCEEEccCCccccCcccCcceeeccccCccCCchHhhhcC-CCCc-ccchhhHHHHHHHHHhCCCCCCccch-hhHH
Q 004400 550 DKDLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRG-HLTE-KADVYSFGIVALEIVSGRSNVTKEDM-FYLL 626 (756)
Q Consensus 550 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~slGv~l~elltg~~p~~~~~~-~~~~ 626 (756)
+.++.+||+|||+++..... ......||+.|+|||.+.+. .++. ++||||||+++|||++|+.||..... ....
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~ 262 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELF 262 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHH
T ss_pred cCCCcEEEeccccccccccc---cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHH
Confidence 99999999999999865443 23446799999999999877 5666 99999999999999999999966543 2222
Q ss_pred HHHHHHHhcCccccccccC-------C---CCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 627 DWALVLKEQGKLMELVDTN-------P---GSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.. .. .... ...... . ...........+.+++.+||+.||.+||++.|+++.
T Consensus 263 ~~---i~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h 323 (348)
T 2pml_X 263 NN---IR-TKNI-EYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH 323 (348)
T ss_dssp HH---HT-SCCC-CCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred HH---Hh-ccCc-CCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 11 11 1111 111000 0 000001223458899999999999999999999873
No 231
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=4.7e-38 Score=336.75 Aligned_cols=259 Identities=20% Similarity=0.290 Sum_probs=204.3
Q ss_pred hcCccccCcccCCCCccEEEeec--cCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCC------ceeeEeeEEEeCCe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL--ADGTAIAVKQLSSKSKQGNREFINEIGMISALQHP------NLVKLYGCCIEGNQ 486 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~------niv~l~~~~~~~~~ 486 (756)
.++|+..+.||+|+||.||+|.. .+++.||||++... ....+.+.+|+++++.++|+ +++++++++.+.+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 45889999999999999999984 46889999999643 33456788999999988765 49999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC--------------
Q 004400 487 LLLIYEYLENNSLARALFEHR-LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK-------------- 551 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~-------------- 551 (756)
.++||||+ +++|.+++.... ..+++..+..++.|++.||+|||+++ |+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~ 167 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNK---LTHTDLKPENILFVQSDYTEAYNPKIKRD 167 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred EEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeccccccccCCccccc
Confidence 99999999 889999997553 46899999999999999999999997 999999999999987
Q ss_pred -----CCCEEEccCCccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHH
Q 004400 552 -----DLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLL 626 (756)
Q Consensus 552 -----~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 626 (756)
++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...+.....
T Consensus 168 ~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~ 243 (339)
T 1z57_A 168 ERTLINPDIKVVDFGSATYDDEH----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHL 243 (339)
T ss_dssp EEEESCCCEEECCCSSCEETTSC----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHH
T ss_pred cccccCCCceEeeCcccccCccc----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHH
Confidence 668999999999864432 23457899999999999989999999999999999999999999766544332
Q ss_pred HHHHHHHhcC--------ccccccc---------------------c-CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCH
Q 004400 627 DWALVLKEQG--------KLMELVD---------------------T-NPGSNFDKEQVMVMINVALLCANASPTIRPSM 676 (756)
Q Consensus 627 ~~~~~~~~~~--------~~~~~~~---------------------~-~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~ 676 (756)
.......... ....... . .............+.+++.+||+.||++|||+
T Consensus 244 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~ 323 (339)
T 1z57_A 244 AMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITL 323 (339)
T ss_dssp HHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCH
Confidence 2211111100 0000000 0 00011123445678999999999999999999
Q ss_pred HHHHHH
Q 004400 677 SSVLRM 682 (756)
Q Consensus 677 ~ev~~~ 682 (756)
.|+++.
T Consensus 324 ~ell~h 329 (339)
T 1z57_A 324 REALKH 329 (339)
T ss_dssp HHHTTS
T ss_pred HHHhcC
Confidence 999753
No 232
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=7.4e-38 Score=341.18 Aligned_cols=261 Identities=20% Similarity=0.258 Sum_probs=203.3
Q ss_pred hhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCC-CC-----ceeeEeeEEEeCCe
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQ-HP-----NLVKLYGCCIEGNQ 486 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~~~ 486 (756)
..++|...+.||+|+||.||+|+ ..+++.||||++... ......+.+|+.+++.++ |+ +|+++++++..++.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence 45789999999999999999998 457889999999743 333466788999988885 55 49999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEec--CCCCEEEccCCcc
Q 004400 487 LLLIYEYLENNSLARALFEHR-LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLD--KDLNSKISDFGLA 563 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~--~~~~~kl~DFGla 563 (756)
.++||||++ |+|.+++.... ..+++..+..++.|++.||+|||.+ ..+|+||||||+|||++ .++.+||+|||++
T Consensus 131 ~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a 208 (382)
T 2vx3_A 131 LCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSS 208 (382)
T ss_dssp EEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred eEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCc
Confidence 999999996 49999997553 4699999999999999999999953 12599999999999994 5778999999999
Q ss_pred ccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcC-------
Q 004400 564 KLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQG------- 636 (756)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~------- 636 (756)
+..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...+...............
T Consensus 209 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~ 284 (382)
T 2vx3_A 209 CQLGQR----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQ 284 (382)
T ss_dssp EETTCC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTT
T ss_pred eecccc----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHh
Confidence 865432 234678999999999999999999999999999999999999998766544433222111100
Q ss_pred --ccccccccC-----------------------------------------CCCCCCHHHHHHHHHHHHHhhcCCCCCC
Q 004400 637 --KLMELVDTN-----------------------------------------PGSNFDKEQVMVMINVALLCANASPTIR 673 (756)
Q Consensus 637 --~~~~~~~~~-----------------------------------------~~~~~~~~~~~~l~~l~~~c~~~~P~~R 673 (756)
.....+... ............+.+++.+||+.||++|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R 364 (382)
T 2vx3_A 285 APKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTR 364 (382)
T ss_dssp CTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTS
T ss_pred hHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhC
Confidence 000000000 0001122344578999999999999999
Q ss_pred CCHHHHHH
Q 004400 674 PSMSSVLR 681 (756)
Q Consensus 674 Pt~~ev~~ 681 (756)
||+.|+++
T Consensus 365 pta~e~L~ 372 (382)
T 2vx3_A 365 IQPYYALQ 372 (382)
T ss_dssp CCHHHHTT
T ss_pred CCHHHHhc
Confidence 99999876
No 233
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=5.6e-39 Score=340.30 Aligned_cols=255 Identities=22% Similarity=0.316 Sum_probs=197.4
Q ss_pred HHHhhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccC--cccHHHHHHHHHHHHhCC--CCceeeEeeEEEeCCe
Q 004400 411 IKAATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKS--KQGNREFINEIGMISALQ--HPNLVKLYGCCIEGNQ 486 (756)
Q Consensus 411 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~ 486 (756)
+....++|...+.||+|+||.||+|...+++.||||++.... ......+.+|++++++++ ||||+++++++.+++.
T Consensus 23 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~ 102 (313)
T 3cek_A 23 MSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQY 102 (313)
T ss_dssp EEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSE
T ss_pred eeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCE
Confidence 334567899999999999999999998889999999986542 334567899999999997 5999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 487 LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
.++||| +.+++|.+++... ..+++..+..++.|++.||+|||+.+ |+||||||+||++++ +.+||+|||+++..
T Consensus 103 ~~lv~e-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~ 176 (313)
T 3cek_A 103 IYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIVD-GMLKLIDFGIANQM 176 (313)
T ss_dssp EEEEEC-CCSEEHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEET-TEEEECCCSSSCC-
T ss_pred EEEEEe-cCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEEEC-CeEEEeeccccccc
Confidence 999999 6788999999765 47899999999999999999999996 999999999999975 78999999999866
Q ss_pred cccCcc-eeeccccCccCCchHhhhc-----------CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHh
Q 004400 567 EEENTH-ISTRVAGTIGYMAPEYAMR-----------GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKE 634 (756)
Q Consensus 567 ~~~~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 634 (756)
...... ......||+.|+|||.+.. ..++.++||||||+++|||++|+.||....... ........
T Consensus 177 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~--~~~~~~~~ 254 (313)
T 3cek_A 177 QPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI--SKLHAIID 254 (313)
T ss_dssp -------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH--HHHHHHHC
T ss_pred cCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHH--HHHHHHHh
Confidence 543322 2234579999999999875 468889999999999999999999995432211 11111111
Q ss_pred cCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 635 QGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
....... .... ...+.+++.+||+.||++||++.|+++.
T Consensus 255 ~~~~~~~-----~~~~----~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 255 PNHEIEF-----PDIP----EKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp TTSCCCC-----CCCS----CHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cccccCC-----cccc----hHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 1111111 1111 2348899999999999999999999864
No 234
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=2.9e-38 Score=342.97 Aligned_cols=257 Identities=22% Similarity=0.369 Sum_probs=197.9
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeE----
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQL---- 487 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 487 (756)
.++|...+.||+|+||.||+|. ..+|+.||||++.... ....+.+.+|+.+++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 3578889999999999999998 4578999999997642 23346788999999999999999999999877654
Q ss_pred --EEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCcccc
Q 004400 488 --LLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKL 565 (756)
Q Consensus 488 --~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~ 565 (756)
++||||+. ++|.+.+. ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++.+||+|||+++.
T Consensus 121 ~~~lv~e~~~-~~l~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 193 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMG---MEFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLARH 193 (371)
T ss_dssp CCEEEEECCC-EEHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECSTTCC--
T ss_pred eEEEEEcccc-ccHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCcCHHHeEECCCCCEEEEecCcccc
Confidence 99999998 58877763 35899999999999999999999997 99999999999999999999999999986
Q ss_pred CcccCcceeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcc------
Q 004400 566 DEEENTHISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKL------ 638 (756)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~------ 638 (756)
.... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||...+.................
T Consensus 194 ~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~ 269 (371)
T 4exu_A 194 ADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKL 269 (371)
T ss_dssp ----------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTC
T ss_pred cccC----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHh
Confidence 5432 234578999999999987 67999999999999999999999999776544433222111110000
Q ss_pred --------ccccccCCCCCC---CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 639 --------MELVDTNPGSNF---DKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 639 --------~~~~~~~~~~~~---~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
...+.......+ .+.....+.+++.+|++.||++|||+.|+++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 324 (371)
T 4exu_A 270 NDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 324 (371)
T ss_dssp SCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred hhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence 000000000000 01123458899999999999999999999864
No 235
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=1.3e-37 Score=335.76 Aligned_cols=258 Identities=20% Similarity=0.279 Sum_probs=200.8
Q ss_pred hcCccccCcccCCCCccEEEeec-cCC-cEEEEEEccccCcccHHHHHHHHHHHHhCCCCc------eeeEeeEEEeCCe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADG-TAIAVKQLSSKSKQGNREFINEIGMISALQHPN------LVKLYGCCIEGNQ 486 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~ 486 (756)
.++|...+.||+|+||.||+|.. .++ +.||+|++... ....+.+.+|+.++++++|++ ++.+++++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 36889999999999999999984 344 68999999643 334567888999999997765 9999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEe----------------
Q 004400 487 LLLIYEYLENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLL---------------- 549 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill---------------- 549 (756)
.++||||+ ++++.+++... ...+++..+..++.||+.||+|||+.+ |+||||||+|||+
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~~~ 172 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQ---LTHTDLKPENILFVNSEFETLYNEHKSCE 172 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEeccccccccccccccc
Confidence 99999999 56676766644 357999999999999999999999986 9999999999999
Q ss_pred ---cCCCCEEEccCCccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHH
Q 004400 550 ---DKDLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLL 626 (756)
Q Consensus 550 ---~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 626 (756)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...+.....
T Consensus 173 ~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~ 248 (355)
T 2eu9_A 173 EKSVKNTSIRVADFGSATFDHEH----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHL 248 (355)
T ss_dssp EEEESCCCEEECCCTTCEETTSC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred ccccCCCcEEEeecCcccccccc----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 56788999999999864432 23457999999999999999999999999999999999999999766544333
Q ss_pred HHHHHHHhcC--------cccccc-cc---------------------CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCH
Q 004400 627 DWALVLKEQG--------KLMELV-DT---------------------NPGSNFDKEQVMVMINVALLCANASPTIRPSM 676 (756)
Q Consensus 627 ~~~~~~~~~~--------~~~~~~-~~---------------------~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~ 676 (756)
.......... ...... .. .............+.+++.+||+.||++|||+
T Consensus 249 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~ 328 (355)
T 2eu9_A 249 VMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITL 328 (355)
T ss_dssp HHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCH
Confidence 2221111100 000000 00 00001122334568899999999999999999
Q ss_pred HHHHH
Q 004400 677 SSVLR 681 (756)
Q Consensus 677 ~ev~~ 681 (756)
.|+++
T Consensus 329 ~e~l~ 333 (355)
T 2eu9_A 329 AEALL 333 (355)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 99875
No 236
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=8.3e-38 Score=331.93 Aligned_cols=251 Identities=24% Similarity=0.384 Sum_probs=181.1
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCc-ccH-HHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSK-QGN-REFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~-~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
.++|+..+.||+|+||.||+|.. .+|+.||||++..... ... +.+.++..+++.++||||+++++++.+++..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 46788899999999999999995 4789999999875432 222 33444556788889999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGE-SRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~-g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
||+ ++.+..........+++..+..++.|++.||+|||++ + |+||||||+||+++.++.+||+|||+++......
T Consensus 104 e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~ 179 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHG---VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK 179 (318)
T ss_dssp CCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred ecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCC---EEeCCCCHHHEEECCCCCEEEEECCCchhccCCc
Confidence 999 5566666655556899999999999999999999985 6 9999999999999999999999999997654332
Q ss_pred cceeeccccCccCCchHhhh-----cCCCCcccchhhHHHHHHHHHhCCCCCCccch-hhHHHHHHHHHhcCcccccccc
Q 004400 571 THISTRVAGTIGYMAPEYAM-----RGHLTEKADVYSFGIVALEIVSGRSNVTKEDM-FYLLDWALVLKEQGKLMELVDT 644 (756)
Q Consensus 571 ~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 644 (756)
. .....||+.|+|||++. ...++.++||||||+++|||++|+.||..... ..... . .... ......
T Consensus 180 ~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~--~-~~~~-~~~~~~-- 251 (318)
T 2dyl_A 180 A--KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLT--K-VLQE-EPPLLP-- 251 (318)
T ss_dssp ---------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHH--H-HHHS-CCCCCC--
T ss_pred c--ccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHH--H-Hhcc-CCCCCC--
Confidence 2 23456899999999994 45689999999999999999999999965322 11111 1 1111 111110
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 645 NPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 645 ~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
....++. .+.+++.+||+.||.+||++.|+++.
T Consensus 252 -~~~~~~~----~l~~li~~~l~~dp~~Rps~~~ll~h 284 (318)
T 2dyl_A 252 -GHMGFSG----DFQSFVKDCLTKDHRKRPKYNKLLEH 284 (318)
T ss_dssp -SSSCCCH----HHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred -ccCCCCH----HHHHHHHHHccCChhHCcCHHHHhhC
Confidence 0112333 48899999999999999999999763
No 237
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=4e-38 Score=335.88 Aligned_cols=254 Identities=25% Similarity=0.420 Sum_probs=178.1
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC-cccHHHHHHHHH-HHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS-KQGNREFINEIG-MISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
.++|...+.||+|+||.||+|.. .+|+.||||++.... ......+..|+. +++.++||||+++++++.+++..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 36888999999999999999995 578999999997542 233345666666 677789999999999999999999999
Q ss_pred EecCCCCHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 492 EYLENNSLARALFE----HRLKLDWPTRRRICLGIARGLAYLHGE-SRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 492 e~~~~gsL~~~l~~----~~~~l~~~~~~~i~~~ia~~L~~LH~~-g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
||+++ +|.+++.. ....+++..+..++.|++.||+|||+. + |+||||||+||+++.++.+||+|||+++..
T Consensus 101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~---ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~ 176 (327)
T 3aln_A 101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK---IIHRDIKPSNILLDRSGNIKLCDFGISGQL 176 (327)
T ss_dssp CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHS---CCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCC---EeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence 99986 78777752 245789999999999999999999997 6 999999999999999999999999999865
Q ss_pred cccCcceeeccccCccCCchHhh----hcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccccc
Q 004400 567 EEENTHISTRVAGTIGYMAPEYA----MRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELV 642 (756)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (756)
..... .....||+.|+|||++ .+..++.++||||||+++|||++|+.||....... +..... ..+.... +
T Consensus 177 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~~~-~~~~~~~-~ 250 (327)
T 3aln_A 177 VDSIA--KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF--DQLTQV-VKGDPPQ-L 250 (327)
T ss_dssp -------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC---------CCC-CCSCCCC-C
T ss_pred ccccc--cccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH--HHHHHH-hcCCCCC-C
Confidence 43322 2334699999999998 45678999999999999999999999996532210 000000 0000000 0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 643 DTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.......++ ..+.+++.+||+.||++||++.++++.
T Consensus 251 ~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~ell~h 286 (327)
T 3aln_A 251 SNSEEREFS----PSFINFVNLCLTKDESKRPKYKELLKH 286 (327)
T ss_dssp CCCSSCCCC----HHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred CCcccccCC----HHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence 011111233 348899999999999999999999763
No 238
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=3.6e-38 Score=342.66 Aligned_cols=259 Identities=20% Similarity=0.305 Sum_probs=200.0
Q ss_pred hcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcccHHHHHHHHHHHHhCC-----------CCceeeEeeEEE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQGNREFINEIGMISALQ-----------HPNLVKLYGCCI 482 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~~ 482 (756)
.++|...+.||+|+||.||+|+ ..+++.||||++... ......+.+|+.++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 4578999999999999999999 467899999999643 334567889999999886 899999999998
Q ss_pred eCC----eEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcC-CCCCeEcCCCCCCceEec------
Q 004400 483 EGN----QLLLIYEYLENNSLARALFEH-RLKLDWPTRRRICLGIARGLAYLHGE-SRIKVVHRDIKATNVLLD------ 550 (756)
Q Consensus 483 ~~~----~~~lV~e~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~-g~~~iiH~Dikp~Nill~------ 550 (756)
..+ ..++||||+ +++|.+++... ...+++..+..++.||+.||+|||++ | |+||||||+|||++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~---ivH~Dikp~NIll~~~~~~~ 172 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDSPE 172 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEEEETTT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCC---EEecCCChHHeEEeccCCCc
Confidence 654 789999999 88999999753 34699999999999999999999997 6 99999999999994
Q ss_pred CCCCEEEccCCccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHH---H
Q 004400 551 KDLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLL---D 627 (756)
Q Consensus 551 ~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~---~ 627 (756)
..+.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......... +
T Consensus 173 ~~~~~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~ 248 (373)
T 1q8y_A 173 NLIQIKIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDD 248 (373)
T ss_dssp TEEEEEECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHH
T ss_pred CcceEEEcccccccccCCC----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHH
Confidence 4447999999999865442 23357899999999999999999999999999999999999999654321100 0
Q ss_pred -HHHHHHhcCcccc--------------------cccc----------CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCH
Q 004400 628 -WALVLKEQGKLME--------------------LVDT----------NPGSNFDKEQVMVMINVALLCANASPTIRPSM 676 (756)
Q Consensus 628 -~~~~~~~~~~~~~--------------------~~~~----------~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~ 676 (756)
........+.... .+.. .....++......+.+++.+||+.||++|||+
T Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~ 328 (373)
T 1q8y_A 249 HIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADA 328 (373)
T ss_dssp HHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCH
T ss_pred HHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCH
Confidence 0000000000000 0000 00113456677789999999999999999999
Q ss_pred HHHHHH
Q 004400 677 SSVLRM 682 (756)
Q Consensus 677 ~ev~~~ 682 (756)
.|+++.
T Consensus 329 ~ell~h 334 (373)
T 1q8y_A 329 GGLVNH 334 (373)
T ss_dssp HHHHTC
T ss_pred HHHhhC
Confidence 999873
No 239
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=5.3e-38 Score=338.71 Aligned_cols=257 Identities=22% Similarity=0.364 Sum_probs=196.8
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEccccC--cccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCe-----
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKS--KQGNREFINEIGMISALQHPNLVKLYGCCIEGNQ----- 486 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 486 (756)
.++|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|+.+++.++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 35788899999999999999994 578999999986542 2234678899999999999999999999987654
Q ss_pred -EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCcccc
Q 004400 487 -LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKL 565 (756)
Q Consensus 487 -~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~ 565 (756)
.++||||++ |+|.+++. ..+++..+..++.||+.||+|||++| |+||||||+||+++.++.+||+|||+++.
T Consensus 103 ~~~lv~e~~~-~~l~~~~~---~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~ 175 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMG---LKFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLARH 175 (353)
T ss_dssp CCEEEEECCS-EEGGGTTT---SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTCCEEECSTTCTTC
T ss_pred eEEEEecccc-CCHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEeECCCCcEEEeecccccC
Confidence 499999998 57776653 35899999999999999999999997 99999999999999999999999999986
Q ss_pred CcccCcceeeccccCccCCchHhhhc-CCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc-------
Q 004400 566 DEEENTHISTRVAGTIGYMAPEYAMR-GHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK------- 637 (756)
Q Consensus 566 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~------- 637 (756)
.... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||...+................
T Consensus 176 ~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~ 251 (353)
T 3coi_A 176 ADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKL 251 (353)
T ss_dssp ------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTC
T ss_pred CCCC----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5432 234578999999999987 6789999999999999999999999976654433222111110000
Q ss_pred -------cccccccCCC---CCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 638 -------LMELVDTNPG---SNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 638 -------~~~~~~~~~~---~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
....+..... ..........+.+++.+|++.||++|||+.|+++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 306 (353)
T 3coi_A 252 NDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 306 (353)
T ss_dssp SCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred hhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 0000000000 01111223458899999999999999999999864
No 240
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=2e-38 Score=336.97 Aligned_cols=242 Identities=22% Similarity=0.380 Sum_probs=199.9
Q ss_pred hhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcc------cHHHHHHHHHHHHhCC--CCceeeEeeEEEeC
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQ------GNREFINEIGMISALQ--HPNLVKLYGCCIEG 484 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~ 484 (756)
..++|...+.||+|+||.||+|+ ..+++.||||.+...... ....+.+|+.++++++ ||||+++++++.++
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 45689999999999999999998 567899999998654221 2245678999999996 59999999999999
Q ss_pred CeEEEEEEecCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEec-CCCCEEEccCCc
Q 004400 485 NQLLLIYEYLEN-NSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLD-KDLNSKISDFGL 562 (756)
Q Consensus 485 ~~~~lV~e~~~~-gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~-~~~~~kl~DFGl 562 (756)
+..++||||+.+ ++|.+++... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++ +++.+||+|||+
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~kL~Dfg~ 196 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFITER-GALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGS 196 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred CcEEEEEEcCCCCccHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC---cEeCCCCHHHEEEeCCCCCEEEeeCcc
Confidence 999999999986 8999999754 47899999999999999999999997 99999999999999 778999999999
Q ss_pred cccCcccCcceeeccccCccCCchHhhhcCCC-CcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccc
Q 004400 563 AKLDEEENTHISTRVAGTIGYMAPEYAMRGHL-TEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMEL 641 (756)
Q Consensus 563 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (756)
++...... .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||...... . . ... .
T Consensus 197 ~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--------~-~-~~~--~ 261 (320)
T 3a99_A 197 GALLKDTV---YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEI--------I-R-GQV--F 261 (320)
T ss_dssp CEECCSSC---BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH--------H-H-CCC--C
T ss_pred cccccccc---ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhhh--------h-c-ccc--c
Confidence 98665432 234569999999999987765 68899999999999999999999654211 0 0 000 0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 642 VDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 642 ~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
....++ ..+.+++.+||+.||++||++.|+++.
T Consensus 262 ----~~~~~~----~~~~~li~~~l~~dp~~Rps~~~ll~h 294 (320)
T 3a99_A 262 ----FRQRVS----SECQHLIRWCLALRPSDRPTFEEIQNH 294 (320)
T ss_dssp ----CSSCCC----HHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred ----ccccCC----HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 111233 348899999999999999999999874
No 241
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=4.9e-38 Score=336.31 Aligned_cols=251 Identities=21% Similarity=0.259 Sum_probs=171.7
Q ss_pred hcCcccc-CcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHH-HHHHhCCCCceeeEeeEEEe----CCeE
Q 004400 415 TNNFATD-NNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEI-GMISALQHPNLVKLYGCCIE----GNQL 487 (756)
Q Consensus 415 ~~~~~~~-~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~-~~l~~l~h~niv~l~~~~~~----~~~~ 487 (756)
.++|... +.||+|+||.||+|.. .+++.||||++... ....+|+ ..++.++||||+++++++.. +...
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 4577774 4699999999999995 47999999998542 2223333 34667799999999999976 4568
Q ss_pred EEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC---CCCEEEccCCcc
Q 004400 488 LLIYEYLENNSLARALFEHR-LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK---DLNSKISDFGLA 563 (756)
Q Consensus 488 ~lV~e~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~---~~~~kl~DFGla 563 (756)
++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+.| |+||||||+||+++. ++.+||+|||++
T Consensus 102 ~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~---ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~ 178 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFGFA 178 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEEecCCCceEEEeccccc
Confidence 99999999999999998553 46999999999999999999999997 999999999999986 455999999999
Q ss_pred ccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccc
Q 004400 564 KLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVD 643 (756)
Q Consensus 564 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (756)
+...... .....||+.|+|||++....++.++|||||||++|+|++|+.||..................... .. .
T Consensus 179 ~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~-~~-~ 253 (336)
T 3fhr_A 179 KETTQNA---LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQY-GF-P 253 (336)
T ss_dssp EEC-------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----------------------CC-C
T ss_pred eeccccc---cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhcccc-cc-C
Confidence 8654322 23456899999999998888999999999999999999999999654432211100000000000 00 0
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 644 TNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 644 ~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
......++ ..+.+++.+|++.||++|||+.|+++.
T Consensus 254 ~~~~~~~~----~~~~~li~~~L~~dP~~Rpt~~ell~h 288 (336)
T 3fhr_A 254 NPEWSEVS----EDAKQLIRLLLKTDPTERLTITQFMNH 288 (336)
T ss_dssp TTTSTTCC----HHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred chhhccCC----HHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 00111223 348899999999999999999999973
No 242
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=334.26 Aligned_cols=244 Identities=25% Similarity=0.381 Sum_probs=192.2
Q ss_pred HHhhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCcc------cHHHHHHHHHHHHhC----CCCceeeEeeE
Q 004400 412 KAATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSKQ------GNREFINEIGMISAL----QHPNLVKLYGC 480 (756)
Q Consensus 412 ~~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l----~h~niv~l~~~ 480 (756)
....++|...+.||+|+||.||+|+ ..+++.||||++...... ....+.+|+.+++++ +||||++++++
T Consensus 27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~ 106 (312)
T 2iwi_A 27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW 106 (312)
T ss_dssp ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence 3456789999999999999999998 467899999999754321 223456799999998 89999999999
Q ss_pred EEeCCeEEEEEEe-cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEec-CCCCEEEc
Q 004400 481 CIEGNQLLLIYEY-LENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLD-KDLNSKIS 558 (756)
Q Consensus 481 ~~~~~~~~lV~e~-~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~-~~~~~kl~ 558 (756)
+.+++..++|||| +.+++|.+++... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++ .++.+||+
T Consensus 107 ~~~~~~~~~v~e~~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~kl~ 182 (312)
T 2iwi_A 107 FETQEGFMLVLERPLPAQDLFDYITEK-GPLGEGPSRCFFGQVVAAIQHCHSRG---VVHRDIKDENILIDLRRGCAKLI 182 (312)
T ss_dssp C-----CEEEEECCSSEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHHT---EECCCCSGGGEEEETTTTEEEEC
T ss_pred EecCCeEEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChhhEEEeCCCCeEEEE
Confidence 9999999999999 8999999999764 36999999999999999999999996 99999999999999 88899999
Q ss_pred cCCccccCcccCcceeeccccCccCCchHhhhcCCCC-cccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc
Q 004400 559 DFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLT-EKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK 637 (756)
Q Consensus 559 DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 637 (756)
|||+++...... .....||..|+|||++.+..+. .++||||||+++|||++|+.||...... .....
T Consensus 183 dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------~~~~~- 250 (312)
T 2iwi_A 183 DFGSGALLHDEP---YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEI--------LEAEL- 250 (312)
T ss_dssp CCSSCEECCSSC---BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH--------HHTCC-
T ss_pred EcchhhhcccCc---ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHHH--------hhhcc-
Confidence 999998665432 2345689999999999877764 5899999999999999999999654211 00000
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 638 LMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
. ....++ ..+.+++.+||+.||++||++.|+++.
T Consensus 251 --~-----~~~~~~----~~~~~li~~~l~~~p~~Rps~~e~l~~ 284 (312)
T 2iwi_A 251 --H-----FPAHVS----PDCCALIRRCLAPKPSSRPSLEEILLD 284 (312)
T ss_dssp --C-----CCTTSC----HHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred --C-----CcccCC----HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0 111222 348899999999999999999999874
No 243
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=1.6e-37 Score=343.95 Aligned_cols=251 Identities=24% Similarity=0.306 Sum_probs=188.4
Q ss_pred cCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEEEEEEec
Q 004400 416 NNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLLLIYEYL 494 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e~~ 494 (756)
+.|...+.||+|+||+||.+...+|+.||||++... ..+.+.+|+++++++ +|||||++++++.+++..++|||||
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~ 91 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC 91 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecC
Confidence 345567889999999998777678999999998643 235678899999886 8999999999999999999999999
Q ss_pred CCCCHHHHHHhcCCC------CCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCC-------------CCE
Q 004400 495 ENNSLARALFEHRLK------LDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKD-------------LNS 555 (756)
Q Consensus 495 ~~gsL~~~l~~~~~~------l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~-------------~~~ 555 (756)
+ |+|.+++...... .++..+..++.||+.||+|||+.+ |+||||||+|||++.+ +.+
T Consensus 92 ~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~ 167 (434)
T 2rio_A 92 N-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK---IIHRDLKPQNILVSTSSRFTADQQTGAENLRI 167 (434)
T ss_dssp S-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEECCHHHHSCCTTCCCSCEE
T ss_pred C-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCcccccccccCCCceEE
Confidence 6 6999999754321 133345789999999999999996 9999999999999754 479
Q ss_pred EEccCCccccCcccCcc---eeeccccCccCCchHhhhc-------CCCCcccchhhHHHHHHHHHh-CCCCCCccchhh
Q 004400 556 KISDFGLAKLDEEENTH---ISTRVAGTIGYMAPEYAMR-------GHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFY 624 (756)
Q Consensus 556 kl~DFGla~~~~~~~~~---~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~ 624 (756)
||+|||+++........ ......||+.|+|||++.+ ..++.++|||||||++|||++ |+.||.......
T Consensus 168 kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~ 247 (434)
T 2rio_A 168 LISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE 247 (434)
T ss_dssp EECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH
T ss_pred EEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH
Confidence 99999999876543322 1234579999999999975 568999999999999999999 899995443221
Q ss_pred HHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 625 LLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
........... .............+.+++.+||+.||++|||+.||++.
T Consensus 248 ----~~i~~~~~~~~-----~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h 296 (434)
T 2rio_A 248 ----SNIIRGIFSLD-----EMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRH 296 (434)
T ss_dssp ----HHHHHTCCCCC-----CCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred ----HHHhcCCCCcc-----cccccccccchHHHHHHHHHHhhCChhhCCCHHHHHhC
Confidence 01111111111 11112244556779999999999999999999999863
No 244
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=343.30 Aligned_cols=250 Identities=23% Similarity=0.299 Sum_probs=190.5
Q ss_pred hhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e 492 (756)
...+|...+.||+|+||+||.....+++.||||++...... .+.+|+++++.+ +|||||++++++.++...++|||
T Consensus 22 ~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~---~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E 98 (432)
T 3p23_A 22 GKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFS---FADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIE 98 (432)
T ss_dssp TTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEE---ECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHH---HHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEE
Confidence 34578889999999999976655667899999998654322 356799999999 79999999999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC-----CCCEEEccCCccccCc
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK-----DLNSKISDFGLAKLDE 567 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~-----~~~~kl~DFGla~~~~ 567 (756)
||. |+|.+++........+..+..++.||+.||+|||+.+ |+||||||+|||++. ...+||+|||+++...
T Consensus 99 ~~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~ 174 (432)
T 3p23_A 99 LCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLN---IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLA 174 (432)
T ss_dssp CCS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTT---CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-
T ss_pred CCC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCc---CEeCCCCHHHEEEecCCCCCceeEEEecccceeecc
Confidence 997 5999999876666777778899999999999999997 999999999999953 3358899999998765
Q ss_pred ccCc--ceeeccccCccCCchHhhh---cCCCCcccchhhHHHHHHHHHh-CCCCCCccchhhHHHHHHHHHhcCccccc
Q 004400 568 EENT--HISTRVAGTIGYMAPEYAM---RGHLTEKADVYSFGIVALEIVS-GRSNVTKEDMFYLLDWALVLKEQGKLMEL 641 (756)
Q Consensus 568 ~~~~--~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (756)
.... .......||+.|+|||++. ...++.++|||||||++|||++ |+.||......... ........ ..
T Consensus 175 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~----~~~~~~~~-~~ 249 (432)
T 3p23_A 175 VGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQAN----ILLGACSL-DC 249 (432)
T ss_dssp -----------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHH----HHTTCCCC-TT
T ss_pred CCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHH----HHhccCCc-cc
Confidence 4322 2234467999999999997 4567889999999999999999 88888443221111 11111100 00
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 642 VDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 642 ~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
..........+.+++.+||+.||.+|||+.||++
T Consensus 250 ------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 250 ------LHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp ------SCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ------cCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 0111233445789999999999999999999985
No 245
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=1e-37 Score=354.89 Aligned_cols=258 Identities=24% Similarity=0.346 Sum_probs=198.8
Q ss_pred hcCccccCcccCCCCccEEEeec-cCCcEEEEEEcccc-CcccHHHHHHHHHHHHhCCCCceeeEeeEEEe------CCe
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSK-SKQGNREFINEIGMISALQHPNLVKLYGCCIE------GNQ 486 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~ 486 (756)
.++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|++++++++||||+++++++.. ++.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 36899999999999999999995 57899999998754 33445678999999999999999999999765 677
Q ss_pred EEEEEEecCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC---EEEccCC
Q 004400 487 LLLIYEYLENNSLARALFEHR--LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN---SKISDFG 561 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~--~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~---~kl~DFG 561 (756)
.++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+.| |+||||||+||+++.++. +||+|||
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~g---IVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTT---BCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEeecCCCceeEEEcccc
Confidence 899999999999999997543 36899999999999999999999997 999999999999997765 9999999
Q ss_pred ccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCc----
Q 004400 562 LAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGK---- 637 (756)
Q Consensus 562 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~---- 637 (756)
+++....... .....||+.|+|||.+.+..++.++|||||||++|||++|+.||.+.... ..|.........
T Consensus 170 ~a~~~~~~~~--~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~--~~~~~~i~~~~~~~~~ 245 (676)
T 3qa8_A 170 YAKELDQGEL--CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQP--VQWHGKVREKSNEHIV 245 (676)
T ss_dssp CCCBTTSCCC--CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHH--HHSSTTCC------CC
T ss_pred cccccccccc--cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccch--hhhhhhhhcccchhhh
Confidence 9987654332 24467999999999999999999999999999999999999999654321 111111000000
Q ss_pred ----ccc---cccc-CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHH
Q 004400 638 ----LME---LVDT-NPGSNFDKEQVMVMINVALLCANASPTIRPSMSSV 679 (756)
Q Consensus 638 ----~~~---~~~~-~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev 679 (756)
... .... .............+.+++.+|++.||++|||+.|+
T Consensus 246 ~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~el 295 (676)
T 3qa8_A 246 VYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQN 295 (676)
T ss_dssp SCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred hhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHH
Confidence 000 0000 11122344566779999999999999999999773
No 246
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.8e-36 Score=356.17 Aligned_cols=278 Identities=30% Similarity=0.439 Sum_probs=237.2
Q ss_pred eccccccccCcccccCCcccCC--CCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEE
Q 004400 18 VNQKRVLKEQNLTGVLPPKLAE--LTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLT 94 (756)
Q Consensus 18 ~~~~l~L~~~~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~ 94 (756)
.++.|+|++|++++.+|..+.. +++|+.|+|++|.+++.+|..+..++.| .+++.+|++.+.+|..|.++++|+.|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 6666666666666666666655 6778888888888888888888888888 488888888888888888888888888
Q ss_pred eecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcC
Q 004400 95 VQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAG 174 (756)
Q Consensus 95 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 174 (756)
|++|.+++.+|..|+.+++|++|+|++|++++.+|..+.++++|+.|+|++|++++.+|..|+++++|++|+|++|++++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 88888888888888888889999999999888888888888999999999999988888888889999999999999988
Q ss_pred CCCccccCCCCCCeEEccCCCCCCCCcccc--------------------------------------------------
Q 004400 175 PIPSGIFSLENLTDLRISDLNGPEATFPQL-------------------------------------------------- 204 (756)
Q Consensus 175 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-------------------------------------------------- 204 (756)
.+|..+..+++|+.|++++|.+....+..+
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 888888889999999998887764333221
Q ss_pred --------------------cc-ccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEec
Q 004400 205 --------------------GN-MKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFA 263 (756)
Q Consensus 205 --------------------~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls 263 (756)
.. .+|+.|+|++|+++|.+|..|+++++|+.|+|++|+++|.+|..|..+++|+.|+|+
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 11 247899999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCchh--hcCCCeeEeecCCCCCCCCc
Q 004400 264 GNLLTGAIPPWM--LERGDKIDLSYNNFTDGSAE 295 (756)
Q Consensus 264 ~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~~ 295 (756)
+|+++|.+|..+ ++.|+.||+++|+++|..|.
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999999999987 78899999999999876553
No 247
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=2.3e-36 Score=315.45 Aligned_cols=229 Identities=14% Similarity=0.091 Sum_probs=182.5
Q ss_pred cCccccCcccCCCCccEEEeec-cCCcEEEEEEccccCc---ccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSK---QGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 491 (756)
++|...+.||+|+||.||+|+. .+++.||||++..... ...+.+.+|+.++++++||||+++++++.+++..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 5788999999999999999995 4589999999976532 23367899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCc
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENT 571 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~ 571 (756)
||+++++|.+++.. .....++.+++.|++.||+|||++| |+||||||+|||++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~---~~~~~~~~~i~~ql~~aL~~lH~~g---ivH~Dikp~NIll~~~g~~kl~~~~---------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADT---SPSPVGAIRAMQSLAAAADAAHRAG---VALSIDHPSRVRVSIDGDVVLAYPA---------- 174 (286)
T ss_dssp ECCCEEEHHHHHTT---CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEETTSCEEECSCC----------
T ss_pred EecCCCCHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHCC---CccCCCCcccEEEcCCCCEEEEecc----------
Confidence 99999999999843 2456678999999999999999997 9999999999999999999998543
Q ss_pred ceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCC--CC
Q 004400 572 HISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPG--SN 649 (756)
Q Consensus 572 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 649 (756)
|++ .++.++|||||||++|||++|+.||...+....... .......... ..
T Consensus 175 -----------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~---------~~~~~~~~~~~~~~ 227 (286)
T 3uqc_A 175 -----------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAP---------AERDTAGQPIEPAD 227 (286)
T ss_dssp -----------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEE---------CCBCTTSCBCCHHH
T ss_pred -----------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHH---------HHHHhccCCCChhh
Confidence 333 368899999999999999999999976543211100 0000000000 00
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccCcc
Q 004400 650 FDKEQVMVMINVALLCANASPTIRPSMSSVLRMLECGVD 688 (756)
Q Consensus 650 ~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~L~~~~~ 688 (756)
........+.+++.+||+.||++| |+.|+++.|++...
T Consensus 228 ~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~ 265 (286)
T 3uqc_A 228 IDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATA 265 (286)
T ss_dssp HCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC
T ss_pred cccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhc
Confidence 011122348899999999999999 99999999996543
No 248
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=2.1e-36 Score=332.62 Aligned_cols=242 Identities=14% Similarity=0.135 Sum_probs=182.5
Q ss_pred HhhcCccccCcccCCCCccEEEee-ccCCcEEEEEEccccCc---ccHHHHHHHHHHHHhCCC-Cce-------------
Q 004400 413 AATNNFATDNNIGEGGFGPVYKGL-LADGTAIAVKQLSSKSK---QGNREFINEIGMISALQH-PNL------------- 474 (756)
Q Consensus 413 ~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h-~ni------------- 474 (756)
..+++|...+.||+|+||.||+|+ ..+|+.||||++..... ...+.+.+|+.+++.++| +|.
T Consensus 75 ~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~ 154 (413)
T 3dzo_A 75 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF 154 (413)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCC
T ss_pred CCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccch
Confidence 345568888999999999999999 66899999999874322 235779999999999987 221
Q ss_pred --ee------EeeEEEe-----CCeEEEEEEecCCCCHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 004400 475 --VK------LYGCCIE-----GNQLLLIYEYLENNSLARALF------EHRLKLDWPTRRRICLGIARGLAYLHGESRI 535 (756)
Q Consensus 475 --v~------l~~~~~~-----~~~~~lV~e~~~~gsL~~~l~------~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~ 535 (756)
+. ++.++.. ....+++|+++ +++|.+++. .....+++..+..++.||++||+|||+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~-- 231 (413)
T 3dzo_A 155 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG-- 231 (413)
T ss_dssp EEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred hhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCC--
Confidence 11 1111111 12356667655 679999884 22345788899999999999999999997
Q ss_pred CeEcCCCCCCceEecCCCCEEEccCCccccCcccCcceeeccccCccCCchHhh----------hcCCCCcccchhhHHH
Q 004400 536 KVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYA----------MRGHLTEKADVYSFGI 605 (756)
Q Consensus 536 ~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~slGv 605 (756)
||||||||+|||++.++.+||+|||+++..... .....| +.|+|||++ ....++.++|||||||
T Consensus 232 -iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGv 305 (413)
T 3dzo_A 232 -LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGL 305 (413)
T ss_dssp -EECSCCCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHH
T ss_pred -cccCCcccceEEEecCCeEEEEeccceeecCCc----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHH
Confidence 999999999999999999999999999865433 344567 999999999 4455888999999999
Q ss_pred HHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 004400 606 VALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLCANASPTIRPSMSSVLR 681 (756)
Q Consensus 606 ~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c~~~~P~~RPt~~ev~~ 681 (756)
++|||++|+.||...+...... ..+... ..++ ..+.+++.+||+.||++||++.++++
T Consensus 306 il~elltg~~Pf~~~~~~~~~~------------~~~~~~--~~~~----~~~~~li~~~l~~dP~~Rpt~~~~l~ 363 (413)
T 3dzo_A 306 AIYWIWCADLPNTDDAALGGSE------------WIFRSC--KNIP----QPVRALLEGFLRYPKEDRLLPLQAME 363 (413)
T ss_dssp HHHHHHHSSCCCCTTGGGSCSG------------GGGSSC--CCCC----HHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHCCCCCCCcchhhhHH------------HHHhhc--ccCC----HHHHHHHHHHccCChhhCcCHHHHHh
Confidence 9999999999996654322111 111111 1233 34889999999999999999998865
No 249
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.2e-36 Score=353.83 Aligned_cols=238 Identities=21% Similarity=0.302 Sum_probs=191.4
Q ss_pred hcCccccCcccCCCCccEEEeecc--CCcEEEEEEcccc-CcccHHHHHHHHHHHHhCCCCceeeEeeEEEeCCe-----
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLA--DGTAIAVKQLSSK-SKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQ----- 486 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~--~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 486 (756)
.++|...+.||+|+||.||+|... +++.||||++... .......+.+|++++++++|||||+++++|.+.+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 368899999999999999999954 6899999998653 23344678899999999999999999999987655
Q ss_pred EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 487 LLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 487 ~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
.|+||||+++++|.+++.. .+++..+..++.||+.||+|||++| ||||||||+|||++.+ .+||+|||+++..
T Consensus 159 ~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH~~g---iiHrDlkp~NIll~~~-~~kl~DFG~a~~~ 231 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLHSIG---LVYNDLKPENIMLTEE-QLKLIDLGAVSRI 231 (681)
T ss_dssp EEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSS-CEEECCCTTCEET
T ss_pred eEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCC---CeecccChHHeEEeCC-cEEEEecccchhc
Confidence 7999999999999987643 7999999999999999999999997 9999999999999986 8999999999865
Q ss_pred cccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCC
Q 004400 567 EEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNP 646 (756)
Q Consensus 567 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (756)
... ....||++|+|||++.+. ++.++|||||||++|||++|..||....... . +
T Consensus 232 ~~~-----~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~----------------~----~ 285 (681)
T 2pzi_A 232 NSF-----GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDG----------------L----P 285 (681)
T ss_dssp TCC-----SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSS----------------C----C
T ss_pred ccC-----CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccccc----------------c----c
Confidence 443 345799999999998765 4899999999999999999988875421110 0 0
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCCCC-HHHHHHHhcc
Q 004400 647 GSNFDKEQVMVMINVALLCANASPTIRPS-MSSVLRMLEC 685 (756)
Q Consensus 647 ~~~~~~~~~~~l~~l~~~c~~~~P~~RPt-~~ev~~~L~~ 685 (756)
...........+.+++.+||+.||++||+ ++++...|.+
T Consensus 286 ~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~ 325 (681)
T 2pzi_A 286 EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG 325 (681)
T ss_dssp TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence 00001122345889999999999999995 5555555553
No 250
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=4.3e-35 Score=308.22 Aligned_cols=226 Identities=19% Similarity=0.294 Sum_probs=177.7
Q ss_pred cCcccc-CcccCCCCccEEEeec-cCCcEEEEEEccccCcccHHHHHHHHHHH-HhCCCCceeeEeeEEEe----CCeEE
Q 004400 416 NNFATD-NNIGEGGFGPVYKGLL-ADGTAIAVKQLSSKSKQGNREFINEIGMI-SALQHPNLVKLYGCCIE----GNQLL 488 (756)
Q Consensus 416 ~~~~~~-~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~~~~ 488 (756)
++|... +.||+|+||.||+|.. .+++.||+|++.. ...+.+|++++ +..+||||+++++++.. +...+
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 91 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 91 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence 456665 7899999999999984 6789999999853 24677899887 66699999999999987 67889
Q ss_pred EEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecC---CCCEEEccCCccc
Q 004400 489 LIYEYLENNSLARALFEHR-LKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDK---DLNSKISDFGLAK 564 (756)
Q Consensus 489 lV~e~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~---~~~~kl~DFGla~ 564 (756)
+||||+++|+|.+++.... ..+++..+..++.|++.||+|||+.+ |+||||||+||+++. ++.+||+|||++.
T Consensus 92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~ 168 (299)
T 3m2w_A 92 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAK 168 (299)
T ss_dssp EEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCTTCE
T ss_pred EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEecCCCCCcEEEecccccc
Confidence 9999999999999998653 46999999999999999999999997 999999999999998 7889999999986
Q ss_pred cCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCCCccchhhHHHHHHHHHhcCcccccccc
Q 004400 565 LDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDT 644 (756)
Q Consensus 565 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (756)
... +..++.++|||||||++|||++|+.||.......... .....+..
T Consensus 169 ~~~-----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~---------~~~~~~~~ 216 (299)
T 3m2w_A 169 ETT-----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP---------GMKTRIRM 216 (299)
T ss_dssp ECT-----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------C---------CSCCSSCT
T ss_pred ccc-----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhH---------HHHHHHhh
Confidence 432 1346779999999999999999999996543321110 00011100
Q ss_pred CCCCCCCH----HHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 004400 645 NPGSNFDK----EQVMVMINVALLCANASPTIRPSMSSVLRM 682 (756)
Q Consensus 645 ~~~~~~~~----~~~~~l~~l~~~c~~~~P~~RPt~~ev~~~ 682 (756)
.. ...+. .....+.+++.+||+.||++|||+.|+++.
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 257 (299)
T 3m2w_A 217 GQ-YEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 257 (299)
T ss_dssp TC-CSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cc-ccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 00 01111 123458899999999999999999999873
No 251
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-35 Score=349.73 Aligned_cols=278 Identities=32% Similarity=0.478 Sum_probs=257.0
Q ss_pred ceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEE
Q 004400 16 KTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLT 94 (756)
Q Consensus 16 ~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~ 94 (756)
+..++.|+|++|++++.+|..|.++++|+.|+|++|.+++.+|..+..++.|+ +++.+|++.+.+|..|..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 67899999999999999999999999999999999999999999999999984 89999999999999999999999999
Q ss_pred eecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcC
Q 004400 95 VQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAG 174 (756)
Q Consensus 95 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 174 (756)
|++|++++.+|..|+++++|++|+|++|++++.+|..|+.+++|+.|+|++|++++.+|..++++++|+.|+|++|+++|
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCccc----------------------------------------------------------------------cCCC
Q 004400 175 PIPSGI----------------------------------------------------------------------FSLE 184 (756)
Q Consensus 175 ~~p~~~----------------------------------------------------------------------~~l~ 184 (756)
.+|..+ ..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 777644 3357
Q ss_pred CCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEec
Q 004400 185 NLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFA 263 (756)
Q Consensus 185 ~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls 263 (756)
+|+.|++++|.+....+..++.+ .|+.|+|++|+++|.+|..|+++++|+.|||++|+++|.+|..+..+++|++|+++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 89999999999999998888887 59999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCchh-hcCCCeeEeecCCCCCCC
Q 004400 264 GNLLTGAIPPWM-LERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 264 ~N~l~~~~p~~~-~~~l~~l~ls~N~l~~~~ 293 (756)
+|+++|.+|... +..+....+.+|+.-|+.
T Consensus 713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp SSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred CCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 999999999764 555666667777644443
No 252
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=3.6e-36 Score=322.05 Aligned_cols=242 Identities=20% Similarity=0.200 Sum_probs=183.8
Q ss_pred hcCccccCcccCCCCccEEEeeccCCcEEEEEEccccC--------cccHHHHHHHHHHHHhCC---------CCceeeE
Q 004400 415 TNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKS--------KQGNREFINEIGMISALQ---------HPNLVKL 477 (756)
Q Consensus 415 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~---------h~niv~l 477 (756)
.++|...+.||+|+||.||+|+. +|+.||||++.... ....+.+.+|+.+++.++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 45788899999999999999987 68999999997542 223377899999999886 7777777
Q ss_pred eeEEE------------------------------eCCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004400 478 YGCCI------------------------------EGNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLA 527 (756)
Q Consensus 478 ~~~~~------------------------------~~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~ 527 (756)
.+++. +++..++||||+++|++.+.+.. ..+++..+..++.||+.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~ 175 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLA 175 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHH
Confidence 77643 26889999999999976665533 46899999999999999999
Q ss_pred HHH-cCCCCCeEcCCCCCCceEecCCC--------------------CEEEccCCccccCcccCcceeeccccCccCCch
Q 004400 528 YLH-GESRIKVVHRDIKATNVLLDKDL--------------------NSKISDFGLAKLDEEENTHISTRVAGTIGYMAP 586 (756)
Q Consensus 528 ~LH-~~g~~~iiH~Dikp~Nill~~~~--------------------~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aP 586 (756)
||| +.+ |+||||||+|||++.++ .+||+|||+|+..... ...||+.|+||
T Consensus 176 ~lH~~~~---ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------~~~gt~~y~aP 246 (336)
T 2vuw_A 176 VAEASLR---FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG------IVVFCDVSMDE 246 (336)
T ss_dssp HHHHHHC---CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT------EEECCCCTTCS
T ss_pred HHHHhCC---EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC------cEEEeecccCh
Confidence 999 886 99999999999999887 8999999999865432 34799999999
Q ss_pred HhhhcCCCCcccchhhHHHH-HHHHHhCCCCCCccchhhHHHHHHHHHhcCccccccccCCCCCCCHHHHHHHHHHHHHh
Q 004400 587 EYAMRGHLTEKADVYSFGIV-ALEIVSGRSNVTKEDMFYLLDWALVLKEQGKLMELVDTNPGSNFDKEQVMVMINVALLC 665 (756)
Q Consensus 587 E~~~~~~~~~~~Dv~slGv~-l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c 665 (756)
|++.+.. +.++||||+|++ .+++++|..||... .|.............................+.+++.+|
T Consensus 247 E~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~ 319 (336)
T 2vuw_A 247 DLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV------LWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTM 319 (336)
T ss_dssp GGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH------HHHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHG
T ss_pred hhhcCCC-ccceehhhhhCCCCcccccccCCCcch------hhhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHH
Confidence 9998655 889999998777 77888899887332 121111100000000011111112334667899999999
Q ss_pred hcCCCCCCCCHHHHH
Q 004400 666 ANASPTIRPSMSSVL 680 (756)
Q Consensus 666 ~~~~P~~RPt~~ev~ 680 (756)
++.| |+.|++
T Consensus 320 L~~d-----sa~e~l 329 (336)
T 2vuw_A 320 LNFS-----SATDLL 329 (336)
T ss_dssp GGSS-----SHHHHH
T ss_pred hccC-----CHHHHH
Confidence 9966 888887
No 253
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.7e-34 Score=299.63 Aligned_cols=256 Identities=28% Similarity=0.402 Sum_probs=184.2
Q ss_pred CCCCEEEccCCcccC--ccCcccccCCcce-eeccC-ccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcE
Q 004400 41 TFLQDIDLTLNYLSG--TIPSQWASLPLLN-ISLIA-NRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEK 116 (756)
Q Consensus 41 ~~L~~L~L~~n~l~~--~~p~~~~~l~~L~-l~l~~-n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 116 (756)
.+++.|+|++|.+++ .+|..|..++.|+ |++.+ |++.+.+|..|+++++|++|+|++|++++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456666666666666 6666666666663 55663 6666666766777777777777777777667777777777777
Q ss_pred EeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcC-CCcEEEccCCcCcCCCCccccCCCCCCeEEccCCC
Q 004400 117 LHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWT-KLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLN 195 (756)
Q Consensus 117 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 195 (756)
|+|++|++++.+|..|..+++|++|+|++|++++.+|..+..++ +|++|+|++|++++.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 77777777766777777777777777777777766777777666 677777777777766677666665 7777777776
Q ss_pred CCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCch
Q 004400 196 GPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPW 274 (756)
Q Consensus 196 ~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 274 (756)
+....+..+... +|+.|+|++|.+++.+|. +..+++|++|+|++|.+++.+|..|..+++|+.|++++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 666655555554 477777778888866665 778888899999999888888888888888999999999888888876
Q ss_pred h-hcCCCeeEeecCCCCCCCCcccc
Q 004400 275 M-LERGDKIDLSYNNFTDGSAESSC 298 (756)
Q Consensus 275 ~-~~~l~~l~ls~N~l~~~~~~~~~ 298 (756)
. +++++.+++++|+..|+.+...|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred ccccccChHHhcCCCCccCCCCCCC
Confidence 4 67888888888885544433334
No 254
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=312.75 Aligned_cols=303 Identities=19% Similarity=0.216 Sum_probs=258.5
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEe
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTV 95 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L 95 (756)
..++.|+|++|++++..|..|.++++|+.|+|++|.|++..|..|..++.|+ |++.+|++....+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4678899999999998889999999999999999999988899999999884 889999998777778899999999999
Q ss_pred ecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCC
Q 004400 96 QYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGP 175 (756)
Q Consensus 96 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 175 (756)
++|++++..+..|.++++|++|+|++|++++..+..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999988888999999999999999999988888999999999999999999977777899999999999999999988
Q ss_pred CCccccCCCCCCeEEccCCCCCCCCcc-ccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCC
Q 004400 176 IPSGIFSLENLTDLRISDLNGPEATFP-QLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDL 254 (756)
Q Consensus 176 ~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 254 (756)
.+..+..+++|+.|++++|......+. .+...+|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 888899999999999998776654433 3444478899999999986555678889999999999999988888888889
Q ss_pred CCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCCcccccccCcccccccccccccCCcc
Q 004400 255 YDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSAESSCQKRSVTGIVSCLRSVQCPKTY 319 (756)
Q Consensus 255 ~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 319 (756)
++|+.|+|++|.+++..|..+ +++|+.|++++|.++...+........+..+....+++.|.+..
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 999999999999988777776 67888999999998887766555555666666667777776543
No 255
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-33 Score=299.46 Aligned_cols=252 Identities=29% Similarity=0.403 Sum_probs=236.6
Q ss_pred eeccccccccCcccc--cCCcccCCCCCCCEEEccC-CcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcE
Q 004400 17 TVNQKRVLKEQNLTG--VLPPKLAELTFLQDIDLTL-NYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVN 92 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~ 92 (756)
..++.|+|++|++++ .+|+.|.++++|++|+|++ |.+.+.+|..|..++.|+ |++.+|++.+.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 468899999999999 9999999999999999995 999999999999999995 899999999999999999999999
Q ss_pred EEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCC-CCCEEEeeCCcccccCChhhcCcCCCcEEEccCCc
Q 004400 93 LTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLT-NMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSG 171 (756)
Q Consensus 93 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 171 (756)
|+|++|.|++.+|..|..+++|++|+|++|++++.+|..+..++ +|+.|+|++|++++.+|..|..++ |++|+|++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999999999999999999999999999999999999998 999999999999999999999998 9999999999
Q ss_pred CcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccC
Q 004400 172 LAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNF 251 (756)
Q Consensus 172 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 251 (756)
+++..|..+..+++|+.|++++|.+....+......+|+.|+|++|.+++.+|..|..+++|+.|+|++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 9999999999999999999999999876666434457999999999999999999999999999999999999999986
Q ss_pred cCCCCCCeEEecCcccccc
Q 004400 252 DDLYDVDYIYFAGNLLTGA 270 (756)
Q Consensus 252 ~~l~~L~~L~ls~N~l~~~ 270 (756)
..+++|+.+++++|+.-+.
T Consensus 288 ~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TTGGGSCGGGTCSSSEEES
T ss_pred ccccccChHHhcCCCCccC
Confidence 8999999999999994433
No 256
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.5e-33 Score=313.01 Aligned_cols=301 Identities=16% Similarity=0.139 Sum_probs=224.1
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCcc-CcccccCCcce-eeccCccccccCCccCcCcCCCcEEE
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTI-PSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLT 94 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~ 94 (756)
..++.|+|++|++++..|..|.++++|++|+|++|.+.+.+ +..|..++.|+ |++.+|++.+..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56888999999999888888999999999999999887555 56788888884 88899999888888999999999999
Q ss_pred eecCcccccCCcc--cCCCCCCcEEeccCCeecccCCcc-ccCCCCCCEEEeeCCcccccCChhhcCc------------
Q 004400 95 VQYNQFSGELPEE--LGSLLNLEKLHLSSNNFTGELPKT-FAKLTNMKDFRISDNQFTGQIPSFIQNW------------ 159 (756)
Q Consensus 95 L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l------------ 159 (756)
|++|++++.++.. |.++++|++|+|++|++++..|.. |.++++|++|+|++|++++..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 888999999999999998777776 7889999999999999988777766654
Q ss_pred ----------------------CCCcEEEccCCcCcCCCCccccC-----------------------------------
Q 004400 160 ----------------------TKLEKLFIQPSGLAGPIPSGIFS----------------------------------- 182 (756)
Q Consensus 160 ----------------------~~L~~L~l~~N~l~~~~p~~~~~----------------------------------- 182 (756)
++|++|+|++|++++..|..+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 55677777777665433332211
Q ss_pred ----CCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCC
Q 004400 183 ----LENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDV 257 (756)
Q Consensus 183 ----l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 257 (756)
.++|+.|++++|.+....+..+... +|+.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 1466666666666666655555554 47777777777777667777777777777777777776667777777777
Q ss_pred CeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCCcccccccCcccccccccccccCC
Q 004400 258 DYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSAESSCQKRSVTGIVSCLRSVQCPK 317 (756)
Q Consensus 258 ~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 317 (756)
+.|+|++|.+++..|.++ +++|+.|++++|++++.++........+..+....+++.|..
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 777777777776666655 567777777777777665544444455555555555555543
No 257
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-33 Score=311.98 Aligned_cols=284 Identities=17% Similarity=0.174 Sum_probs=252.4
Q ss_pred eeeccceeccccccccCcccccC-CcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCcc--CcC
Q 004400 11 HFWKQKTVNQKRVLKEQNLTGVL-PPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKY--LAN 86 (756)
Q Consensus 11 ~~~~~~~~~~~l~L~~~~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~--l~~ 86 (756)
..+.+++.++.|+|++|.+.+.+ +..|..+++|++|+|++|.+++..|..|..++.|+ |++.+|++.+.+|.. |.+
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence 45788999999999999998655 56799999999999999999988899999999984 899999999866655 999
Q ss_pred cCCCcEEEeecCcccccCCcc-cCCCCCCcEEeccCCeecccCCccccCC------------------------------
Q 004400 87 ISTLVNLTVQYNQFSGELPEE-LGSLLNLEKLHLSSNNFTGELPKTFAKL------------------------------ 135 (756)
Q Consensus 87 l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l------------------------------ 135 (756)
+++|++|+|++|++++..|.. |.++++|++|+|++|++++..+..+..+
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 999999999999999887876 8999999999999999998888766554
Q ss_pred ----CCCCEEEeeCCcccccCChhhcCc---------------------------------------CCCcEEEccCCcC
Q 004400 136 ----TNMKDFRISDNQFTGQIPSFIQNW---------------------------------------TKLEKLFIQPSGL 172 (756)
Q Consensus 136 ----~~L~~L~L~~N~l~~~~p~~~~~l---------------------------------------~~L~~L~l~~N~l 172 (756)
++|+.|+|++|++++..|..+..+ ++|+.|++++|++
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence 679999999999987776655432 6899999999999
Q ss_pred cCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccC
Q 004400 173 AGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNF 251 (756)
Q Consensus 173 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 251 (756)
.+..|..+..+++|+.|++++|.+....+..+..+ +|+.|+|++|.+++..|..|.++++|+.|+|++|++++..|..|
T Consensus 288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence 99999999999999999999999999888777765 69999999999998889999999999999999999999999999
Q ss_pred cCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCC
Q 004400 252 DDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 252 ~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~ 294 (756)
..+++|++|++++|++++..+..+ ++.++.|++++|+++|..+
T Consensus 368 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999996555444 7899999999999998765
No 258
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=309.18 Aligned_cols=284 Identities=18% Similarity=0.150 Sum_probs=262.5
Q ss_pred eeeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCC
Q 004400 11 HFWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANIST 89 (756)
Q Consensus 11 ~~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~ 89 (756)
..|.++..++.|+|++|++++..|..|.++++|+.|+|++|+|+...+..|..++.| .|++.+|++.+..|..|.++++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 457889999999999999999999999999999999999999997777788999998 5999999999999999999999
Q ss_pred CcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccC
Q 004400 90 LVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQP 169 (756)
Q Consensus 90 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 169 (756)
|++|+|++|.+++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|.++++|+.|++++
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 99999999999999999999999999999999999977677899999999999999999988888999999999999999
Q ss_pred CcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCC
Q 004400 170 SGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIP 248 (756)
Q Consensus 170 N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 248 (756)
|.+.+.+|..+....+|+.|++++|.+...+...+... +|+.|+|++|.+++..+..|.++++|+.|+|++|++++..|
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence 99988888888888899999999999998876666665 69999999999998888899999999999999999999999
Q ss_pred ccCcCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCC
Q 004400 249 SNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 249 ~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~ 294 (756)
..|..+++|+.|+|++|.+++..+..+ +++|+.|++++|++.|...
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 999999999999999999996555554 7899999999999987643
No 259
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=5.1e-31 Score=305.35 Aligned_cols=300 Identities=19% Similarity=0.172 Sum_probs=265.5
Q ss_pred eccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEee
Q 004400 18 VNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTVQ 96 (756)
Q Consensus 18 ~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L~ 96 (756)
.++.|+|++|++++..+..|..+++|+.|+|++|.++ .+|..+..++.| .+++.+|++.+..|..+.++++|++|+|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7899999999999988888999999999999999998 788889999888 48999999998889999999999999999
Q ss_pred cCcccccCCc-ccCCCCCCcEEeccCCeecccC--CccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCc
Q 004400 97 YNQFSGELPE-ELGSLLNLEKLHLSSNNFTGEL--PKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLA 173 (756)
Q Consensus 97 ~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 173 (756)
+|.+.+.+|. .+..+++|++|+|++|++++.. +..+..+++|++|++++|++++..|..|.++++|+.|++++|++.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 9999877765 4899999999999999999766 778999999999999999999888999999999999999999999
Q ss_pred CCCCcc-ccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCC---CCccccCCCCCcEEEccCCcCCCCCC
Q 004400 174 GPIPSG-IFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGE---LPRYLGKMTKLKVLDLSFNRLRGQIP 248 (756)
Q Consensus 174 ~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p 248 (756)
+..+.. +..+++|+.|++++|.+....+..+... +|+.|++++|.+++. .+..+..+++|+.|+|++|.+++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 776654 8899999999999999988887777665 699999999999872 34678999999999999999999889
Q ss_pred ccCcCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCCcccccccCcccccccccccccCCcc
Q 004400 249 SNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSAESSCQKRSVTGIVSCLRSVQCPKTY 319 (756)
Q Consensus 249 ~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 319 (756)
..|..+++|+.|++++|++++..|..+ ++.+ .|++++|.+++..+........+..+....+++.|.+..
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999998888777 6778 999999999988777666666677777777888886543
No 260
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=4.2e-31 Score=306.03 Aligned_cols=281 Identities=20% Similarity=0.237 Sum_probs=256.3
Q ss_pred eeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCc-cCcCcCC
Q 004400 12 FWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPK-YLANIST 89 (756)
Q Consensus 12 ~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~-~l~~l~~ 89 (756)
.|.++..++.|+|++|+++ .+|+.+..+++|+.|++++|.+++..|..+..++.| .+++.+|.+.+.+|. .|.++++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 4788999999999999999 778889999999999999999998889999999998 589999999977776 4999999
Q ss_pred CcEEEeecCcccccC--CcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCCh-hhcCcCCCcEEE
Q 004400 90 LVNLTVQYNQFSGEL--PEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPS-FIQNWTKLEKLF 166 (756)
Q Consensus 90 L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~ 166 (756)
|++|+|++|.+++.. +..+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+. .|.++++|+.|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 999999999999766 78899999999999999999999999999999999999999999977654 489999999999
Q ss_pred ccCCcCcCCCCccccCCCCCCeEEccCCCCCCCC---ccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCc
Q 004400 167 IQPSGLAGPIPSGIFSLENLTDLRISDLNGPEAT---FPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNR 242 (756)
Q Consensus 167 l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 242 (756)
+++|.+.+..|..+..+++|++|++++|.+.... ...+... +|+.|+|++|.+++..|..|.++++|+.|+|++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 9999999989999999999999999999998632 2345544 69999999999999999999999999999999999
Q ss_pred CCCCCCccCcCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCC
Q 004400 243 LRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 243 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~ 294 (756)
+++..|..+..+++| .|++++|.+++..|..+ ++.++.+++++|++.|...
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999 99999999998777765 7899999999999987643
No 261
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=7.3e-31 Score=304.03 Aligned_cols=116 Identities=21% Similarity=0.198 Sum_probs=83.6
Q ss_pred eeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCC
Q 004400 12 FWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTL 90 (756)
Q Consensus 12 ~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L 90 (756)
.|.+++.++.|+|++|++++..|..|.++++|++|+|++|.+++..|..|..++.|+ |++.+|++.+..+..|+++++|
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 466777777777777777777777777777777777777777766677777777774 6777777776666667777777
Q ss_pred cEEEeecCcccc-cCCcccCCCCCCcEEeccCCeeccc
Q 004400 91 VNLTVQYNQFSG-ELPEELGSLLNLEKLHLSSNNFTGE 127 (756)
Q Consensus 91 ~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~ 127 (756)
++|+|++|.+++ .+|..|+++++|++|+|++|++++.
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 777777777764 4567777777777777777766543
No 262
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.5e-31 Score=306.39 Aligned_cols=295 Identities=17% Similarity=0.209 Sum_probs=232.0
Q ss_pred eeeccceeccccccccCc-ccc-cCCcccCCC------CCCCEEEccCCcccCccCc--ccccCCcc-eeeccCcccccc
Q 004400 11 HFWKQKTVNQKRVLKEQN-LTG-VLPPKLAEL------TFLQDIDLTLNYLSGTIPS--QWASLPLL-NISLIANRLKGP 79 (756)
Q Consensus 11 ~~~~~~~~~~~l~L~~~~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L-~l~l~~n~~~~~ 79 (756)
..+.+++.++.|+|++|+ ++| .+|..+.++ ++|+.|+|++|+++ .+|. .+..++.| .|++.+|++.|.
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 457788889999999998 888 888888776 88899999999888 7887 88888888 488888888888
Q ss_pred CCccCcCcCCCcEEEeecCcccccCCcccCCCCC-CcEEeccCCeecccCCccccCCC--CCCEEEeeCCcccccCChhh
Q 004400 80 IPKYLANISTLVNLTVQYNQFSGELPEELGSLLN-LEKLHLSSNNFTGELPKTFAKLT--NMKDFRISDNQFTGQIPSFI 156 (756)
Q Consensus 80 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~ 156 (756)
+| .|+++++|++|+|++|+++ .+|..|+++++ |++|+|++|+++ .+|..+..++ +|+.|+|++|++++.+|..|
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred hh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 88 8888888888888888888 78888888888 888888888888 7787777654 88888888888888888888
Q ss_pred c-------CcCCCcEEEccCCcCcCCCCcc-ccCCCCCCeEEccCCCCCCCCccccccc--------cccEEEccccccc
Q 004400 157 Q-------NWTKLEKLFIQPSGLAGPIPSG-IFSLENLTDLRISDLNGPEATFPQLGNM--------KMTKLILRNCNIT 220 (756)
Q Consensus 157 ~-------~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~--------~L~~L~L~~n~l~ 220 (756)
. .+++|+.|+|++|+++ .+|.. +..+++|+.|++++|.+...+...+... +|+.|+|++|.++
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred cccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 7 7788888888888888 45554 4458888888888888886665555543 6888888888888
Q ss_pred CCCCcccc--CCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEe------cCccccccCCchh--hcCCCeeEeecCCCC
Q 004400 221 GELPRYLG--KMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYF------AGNLLTGAIPPWM--LERGDKIDLSYNNFT 290 (756)
Q Consensus 221 ~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l------s~N~l~~~~p~~~--~~~l~~l~ls~N~l~ 290 (756)
.+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|.+.+.+|.++ +++|+.|++++|++.
T Consensus 502 -~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 502 -KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp -BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred -ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 6777776 88888888888888886 7888888888888888 5677788888777 778888888888885
Q ss_pred CCCCcccccccCccccccccccccc
Q 004400 291 DGSAESSCQKRSVTGIVSCLRSVQC 315 (756)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~c 315 (756)
..+. ..+ ..+..+....++..|
T Consensus 580 ~ip~-~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 580 KVNE-KIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp BCCS-CCC--TTCCEEECCSCTTCE
T ss_pred ccCH-hHh--CcCCEEECcCCCCcc
Confidence 4432 222 344444444444443
No 263
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.9e-31 Score=308.04 Aligned_cols=289 Identities=21% Similarity=0.238 Sum_probs=253.0
Q ss_pred eeec--cceeccccccccCcccccCCcccCCCCCCCEEEccCCc-ccC-ccCcccccC------Ccc-eeeccCcccccc
Q 004400 11 HFWK--QKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNY-LSG-TIPSQWASL------PLL-NISLIANRLKGP 79 (756)
Q Consensus 11 ~~~~--~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L-~l~l~~n~~~~~ 79 (756)
..+. +++.++.|+|++|++.+.+|+.|.++++|+.|+|++|+ +++ .+|..+..+ +.| .|++.+|++. .
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c
Confidence 4455 89999999999999999999999999999999999998 998 899988876 777 5899999999 8
Q ss_pred CCc--cCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCC-CCEEEeeCCcccccCChhh
Q 004400 80 IPK--YLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTN-MKDFRISDNQFTGQIPSFI 156 (756)
Q Consensus 80 ~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~ 156 (756)
+|. .|+++++|+.|+|++|+++|.+| .|+++++|++|+|++|+++ .+|..+..+++ |+.|+|++|+++ .+|..+
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 998 99999999999999999999999 9999999999999999999 89999999999 999999999999 888888
Q ss_pred cCcC--CCcEEEccCCcCcCCCCcccc-------CCCCCCeEEccCCCCCCCCcccccc-ccccEEEcccccccCCCCcc
Q 004400 157 QNWT--KLEKLFIQPSGLAGPIPSGIF-------SLENLTDLRISDLNGPEATFPQLGN-MKMTKLILRNCNITGELPRY 226 (756)
Q Consensus 157 ~~l~--~L~~L~l~~N~l~~~~p~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~ 226 (756)
..++ +|+.|++++|++++..|..+. .+++|+.|++++|.+...+...+.. .+|+.|+|++|.++...+..
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 476 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence 8765 999999999999999999888 8899999999999999776666664 46999999999999443344
Q ss_pred ccCCC-------CCcEEEccCCcCCCCCCccCc--CCCCCCeEEecCccccccCCchh--hcCCCeeEee------cCCC
Q 004400 227 LGKMT-------KLKVLDLSFNRLRGQIPSNFD--DLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLS------YNNF 289 (756)
Q Consensus 227 ~~~l~-------~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls------~N~l 289 (756)
+..+. +|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+ +++|+.|+++ +|++
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred hccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence 44333 9999999999999 7888887 99999999999999997 88877 7899999995 4666
Q ss_pred CCCCCcccccccCccc
Q 004400 290 TDGSAESSCQKRSVTG 305 (756)
Q Consensus 290 ~~~~~~~~~~~~~~~~ 305 (756)
.+..+...+....+..
T Consensus 555 ~~~~p~~l~~l~~L~~ 570 (636)
T 4eco_A 555 LREWPEGITLCPSLTQ 570 (636)
T ss_dssp CCCCCTTGGGCSSCCE
T ss_pred cccChHHHhcCCCCCE
Confidence 6665555554444443
No 264
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.6e-30 Score=304.14 Aligned_cols=266 Identities=19% Similarity=0.250 Sum_probs=189.1
Q ss_pred eccceeccccccccCcccccCCcccCCCCCCCEEEccCCc-ccC-ccCcccccCC-------cc-eeeccCccccccCCc
Q 004400 13 WKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNY-LSG-TIPSQWASLP-------LL-NISLIANRLKGPIPK 82 (756)
Q Consensus 13 ~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L-~l~l~~n~~~~~~p~ 82 (756)
|.+++.++.|+|++|++.+.+|..|.++++|+.|+|++|+ +++ .+|..+..++ .| .|++.+|++. .+|.
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence 3499999999999999999999999999999999999998 998 8898777765 77 5899999999 8898
Q ss_pred --cCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCC-CCEEEeeCCcccccCChhhcCc
Q 004400 83 --YLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTN-MKDFRISDNQFTGQIPSFIQNW 159 (756)
Q Consensus 83 --~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l 159 (756)
.|+++++|+.|+|++|+|+ .+| .|+++++|+.|+|++|+++ .+|..+..+++ |+.|+|++|+|+ .+|..+..+
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~ 641 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence 9999999999999999999 888 8999999999999999999 89988999999 999999999999 788887776
Q ss_pred CC--CcEEEccCCcCcCCCCccc---c--CCCCCCeEEccCCCCCCCCcccccc-ccccEEEcccccccCCCCccccC-C
Q 004400 160 TK--LEKLFIQPSGLAGPIPSGI---F--SLENLTDLRISDLNGPEATFPQLGN-MKMTKLILRNCNITGELPRYLGK-M 230 (756)
Q Consensus 160 ~~--L~~L~l~~N~l~~~~p~~~---~--~l~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~~~~-l 230 (756)
+. |+.|+|++|++.+.+|... . .+++|+.|++++|.+...+...+.. .+|+.|+|++|.++ .+|..+.. .
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 54 8888888888876544221 1 2335555555555555433333322 23555555555555 23322211 1
Q ss_pred -------CCCcEEEccCCcCCCCCCccCc--CCCCCCeEEecCccccccCCchh--hcCCCeeEeec
Q 004400 231 -------TKLKVLDLSFNRLRGQIPSNFD--DLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSY 286 (756)
Q Consensus 231 -------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~ 286 (756)
++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|.+++ +|..+ +++|+.|++++
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 14555555555555 3444443 45555555555555543 34333 44445555443
No 265
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=292.43 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=77.2
Q ss_pred CcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCC--ccccccc-cccEEEcccccccCCCCc-cccCCCCC
Q 004400 158 NWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEAT--FPQLGNM-KMTKLILRNCNITGELPR-YLGKMTKL 233 (756)
Q Consensus 158 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~-~L~~L~L~~n~l~~~~p~-~~~~l~~L 233 (756)
.+++|++|++++|++++..|..+..+++|++|++++|.+.... +..+..+ +|+.|+|++|.+++.+|. .+..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 4445555555555555445555555555555555555554321 1222222 355555555555543333 24455555
Q ss_pred cEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCCcccccccCccccccccc
Q 004400 234 KVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSAESSCQKRSVTGIVSCLR 311 (756)
Q Consensus 234 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~~~~~~~~~~~~~~~~~~ 311 (756)
+.|+|++|++++.+|..+. ++|+.|++++|.++ .+|.++ +++++.|++++|+++..+.........+..+....+
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 5555555555544444332 45555555555555 455443 455666666666666444332333334444444445
Q ss_pred ccccCC
Q 004400 312 SVQCPK 317 (756)
Q Consensus 312 ~~~c~~ 317 (756)
++.|.+
T Consensus 479 ~~~c~c 484 (520)
T 2z7x_B 479 PWDCSC 484 (520)
T ss_dssp CBCCCH
T ss_pred CCcccC
Confidence 555543
No 266
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.2e-29 Score=291.00 Aligned_cols=296 Identities=17% Similarity=0.159 Sum_probs=172.4
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEe
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTV 95 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L 95 (756)
..++.|+|++|++++..|..|..+++|++|+|++|+|++..|..|..++.|+ |++++|++. .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 4566666666666666556666666666666666666655566666666663 566666655 44444 5666666666
Q ss_pred ecCcccc-cCCcccCCCCCCcEEeccCCeecc-------------------------cCCccccCCC-------------
Q 004400 96 QYNQFSG-ELPEELGSLLNLEKLHLSSNNFTG-------------------------ELPKTFAKLT------------- 136 (756)
Q Consensus 96 ~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~-------------------------~~p~~~~~l~------------- 136 (756)
++|++++ .+|..|+++++|++|+|++|++++ ..|..|..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 6666664 234566666666666666665543 3333333222
Q ss_pred --------------------------------------------------------------------CCCEEEeeCCcc
Q 004400 137 --------------------------------------------------------------------NMKDFRISDNQF 148 (756)
Q Consensus 137 --------------------------------------------------------------------~L~~L~L~~N~l 148 (756)
+|++|++++|++
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 444555555555
Q ss_pred cccCChhh-----------------------------------------------------cCcCCCcEEEccCCcCcCC
Q 004400 149 TGQIPSFI-----------------------------------------------------QNWTKLEKLFIQPSGLAGP 175 (756)
Q Consensus 149 ~~~~p~~~-----------------------------------------------------~~l~~L~~L~l~~N~l~~~ 175 (756)
+|.+|..+ ..+++|++|++++|++++.
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~ 368 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccc
Confidence 55454433 4556666666666666666
Q ss_pred CCccccCCCCCCeEEccCCCCCCCCc--cccccc-cccEEEcccccccCCCC-ccccCCCCCcEEEccCCcCCCCCCccC
Q 004400 176 IPSGIFSLENLTDLRISDLNGPEATF--PQLGNM-KMTKLILRNCNITGELP-RYLGKMTKLKVLDLSFNRLRGQIPSNF 251 (756)
Q Consensus 176 ~p~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~-~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 251 (756)
.|..+.++++|+.|++++|.+..... ..+... +|+.|+|++|.+++.+| ..+..+++|+.|+|++|++++.+|..+
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 66666666666666666666665432 223332 46666666666665333 335666666666666666665555443
Q ss_pred cCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCCcccccccCcccccccccccccCCc
Q 004400 252 DDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSAESSCQKRSVTGIVSCLRSVQCPKT 318 (756)
Q Consensus 252 ~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 318 (756)
. ++|+.|++++|.++ .+|..+ ++.++.|++++|+++..+.........+..+....+++.|.+.
T Consensus 449 ~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp C--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred c--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 3 56677777777766 555544 5667777777777775554433444445555555566666543
No 267
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=304.72 Aligned_cols=278 Identities=20% Similarity=0.216 Sum_probs=167.7
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCcc-CcccccCCcce-eeccCccccccCCccCcCcCCCcEEE
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTI-PSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLT 94 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~ 94 (756)
..++.|+|++|.+++..|..|.++++|++|+|++|.+.+.+ |..|..++.|+ |++.+|++.+..|..|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 56677777777777777777777777777777777554444 66677777774 67777777777777777777777777
Q ss_pred eecCcccccCCcc--cCCCCCCcEEeccCCeecccCC-ccccCCCCCCEEEeeCCcccccCChhhcCc--CCCcEEEccC
Q 004400 95 VQYNQFSGELPEE--LGSLLNLEKLHLSSNNFTGELP-KTFAKLTNMKDFRISDNQFTGQIPSFIQNW--TKLEKLFIQP 169 (756)
Q Consensus 95 L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~l~~ 169 (756)
|++|.+++.+|.. |+++++|++|+|++|.+++..+ ..|+++++|++|+|++|++++..+..|..+ ++|+.|+|++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 7777777655544 7777777777777777765544 457777777777777777776666666665 6666666666
Q ss_pred CcCcCCCCccccCCCC------CCeEEccCCCCCCCCccccc--------------------------------------
Q 004400 170 SGLAGPIPSGIFSLEN------LTDLRISDLNGPEATFPQLG-------------------------------------- 205 (756)
Q Consensus 170 N~l~~~~p~~~~~l~~------L~~L~l~~n~~~~~~~~~~~-------------------------------------- 205 (756)
|.+.+..|..+..+.+ |+.|++++|.+....+..+.
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 6666655555554444 55555555543321111100
Q ss_pred -cccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh--hcCCCee
Q 004400 206 -NMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKI 282 (756)
Q Consensus 206 -~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l 282 (756)
..+|+.|+|++|.+.+..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..|..+ +++++.|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 1134555555555554445555555555555555555554445555555555555555555544444433 4445555
Q ss_pred EeecCCCCCCCC
Q 004400 283 DLSYNNFTDGSA 294 (756)
Q Consensus 283 ~ls~N~l~~~~~ 294 (756)
++++|.+....+
T Consensus 344 ~L~~N~i~~~~~ 355 (844)
T 3j0a_A 344 DLQKNHIAIIQD 355 (844)
T ss_dssp ECCSCCCCCCCS
T ss_pred ECCCCCCCccCh
Confidence 555555444433
No 268
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.7e-30 Score=303.20 Aligned_cols=287 Identities=20% Similarity=0.224 Sum_probs=248.6
Q ss_pred eeeccceeccccccccCcccc-----------------cCCcccC--CCCCCCEEEccCCcccCccCcccccCCcce-ee
Q 004400 11 HFWKQKTVNQKRVLKEQNLTG-----------------VLPPKLA--ELTFLQDIDLTLNYLSGTIPSQWASLPLLN-IS 70 (756)
Q Consensus 11 ~~~~~~~~~~~l~L~~~~l~~-----------------~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~ 70 (756)
..+.+++.++.|+|++|++++ .+|+.++ ++++|+.|+|++|.+.+.+|..|..++.|+ |+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 458899999999999999999 4899988 999999999999999999999999999995 89
Q ss_pred ccCcc-ccc-cCCccCcCcC-------CCcEEEeecCcccccCCc--ccCCCCCCcEEeccCCeecccCCccccCCCCCC
Q 004400 71 LIANR-LKG-PIPKYLANIS-------TLVNLTVQYNQFSGELPE--ELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMK 139 (756)
Q Consensus 71 l~~n~-~~~-~~p~~l~~l~-------~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 139 (756)
+.+|+ +++ .+|..+++++ +|+.|+|++|+|+ .+|. .|+++++|+.|+|++|+++ .+| .|..+++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEES
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcce
Confidence 99998 888 8998777776 9999999999999 8888 9999999999999999999 888 899999999
Q ss_pred EEEeeCCcccccCChhhcCcCC-CcEEEccCCcCcCCCCccccCCCC--CCeEEccCCCCCCCCcccc------cccccc
Q 004400 140 DFRISDNQFTGQIPSFIQNWTK-LEKLFIQPSGLAGPIPSGIFSLEN--LTDLRISDLNGPEATFPQL------GNMKMT 210 (756)
Q Consensus 140 ~L~L~~N~l~~~~p~~~~~l~~-L~~L~l~~N~l~~~~p~~~~~l~~--L~~L~l~~n~~~~~~~~~~------~~~~L~ 210 (756)
.|+|++|+++ .+|..+.++++ |+.|+|++|+++ .+|..+..++. |+.|++++|.+....+... ...+|+
T Consensus 599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred EEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 9999999999 89999999999 999999999999 78988887655 9999999999987544222 334699
Q ss_pred EEEcccccccCCCCcc-ccCCCCCcEEEccCCcCCCCCCccCcC--------CCCCCeEEecCccccccCCchh----hc
Q 004400 211 KLILRNCNITGELPRY-LGKMTKLKVLDLSFNRLRGQIPSNFDD--------LYDVDYIYFAGNLLTGAIPPWM----LE 277 (756)
Q Consensus 211 ~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~--------l~~L~~L~ls~N~l~~~~p~~~----~~ 277 (756)
.|+|++|.++ .+|.. +..+++|+.|+|++|+|+ .+|..+.. +++|+.|+|++|+++ .+|..+ ++
T Consensus 677 ~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~ 753 (876)
T 4ecn_A 677 TVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753 (876)
T ss_dssp EEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred EEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence 9999999999 55554 568999999999999999 56654433 239999999999999 788765 58
Q ss_pred CCCeeEeecCCCCCCCCcccccccCcccc
Q 004400 278 RGDKIDLSYNNFTDGSAESSCQKRSVTGI 306 (756)
Q Consensus 278 ~l~~l~ls~N~l~~~~~~~~~~~~~~~~~ 306 (756)
+|+.|++++|++++. +........+..+
T Consensus 754 ~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L 781 (876)
T 4ecn_A 754 YLSNMDVSYNCFSSF-PTQPLNSSQLKAF 781 (876)
T ss_dssp TCCEEECCSSCCSSC-CCGGGGCTTCCEE
T ss_pred CcCEEEeCCCCCCcc-chhhhcCCCCCEE
Confidence 899999999999985 4444444444444
No 269
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=3.4e-29 Score=294.01 Aligned_cols=306 Identities=20% Similarity=0.195 Sum_probs=200.1
Q ss_pred ecccee--ccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-----------------------
Q 004400 13 WKQKTV--NQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL----------------------- 67 (756)
Q Consensus 13 ~~~~~~--~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L----------------------- 67 (756)
+.++.. ++.|+|++|++++..|..|..+++|+.|+|++|.+++..|..|..++.|
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccC
Confidence 445544 8888888888888877888888888888888888877666555544433
Q ss_pred -----------eeeccCccccccCCccCcCcCCCcEEEeec----------------------------CcccccCCccc
Q 004400 68 -----------NISLIANRLKGPIPKYLANISTLVNLTVQY----------------------------NQFSGELPEEL 108 (756)
Q Consensus 68 -----------~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~----------------------------N~l~~~~p~~~ 108 (756)
.+++.+|++.+..|..|.++++|++|+|++ |++++..|.+|
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT
T ss_pred hhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh
Confidence 244555555555555555555544444433 33444444555
Q ss_pred CCCCCCcEEeccCCeecccCC-ccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCc--CCCCccccCCCC
Q 004400 109 GSLLNLEKLHLSSNNFTGELP-KTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLA--GPIPSGIFSLEN 185 (756)
Q Consensus 109 ~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~--~~~p~~~~~l~~ 185 (756)
..+++|+.|+|++|++++.+| ..|.++++|++|+|++|++++..+..|..+++|+.|++++|.+. +..|..+..+++
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence 555556666666665554444 44555566666666666655555555666666666666666654 456777777888
Q ss_pred CCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCC--------ccccCCCCCcEEEccCCcCCCCCCccCcCCCC
Q 004400 186 LTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELP--------RYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYD 256 (756)
Q Consensus 186 L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 256 (756)
|+.|++++|.+....+..+... +|+.|+|++|.+++..+ ..|.++++|+.|+|++|+++...+..|.++++
T Consensus 482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence 8888888888877776666554 58888888888775422 23677888888888888888555556888888
Q ss_pred CCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCCcccc-cccCcccccccccccccCCc
Q 004400 257 VDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSAESSC-QKRSVTGIVSCLRSVQCPKT 318 (756)
Q Consensus 257 L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~ 318 (756)
|+.|+|++|.+++..+..+ ++.++.|++++|.+++..+.... ....+..+....+++.|.+.
T Consensus 562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 8888888888884444433 57788888888888876654433 33445555566677777654
No 270
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=303.46 Aligned_cols=284 Identities=20% Similarity=0.166 Sum_probs=233.2
Q ss_pred eeeeccceeccccccccCcccccC-CcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCcc--Cc
Q 004400 10 FHFWKQKTVNQKRVLKEQNLTGVL-PPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKY--LA 85 (756)
Q Consensus 10 ~~~~~~~~~~~~l~L~~~~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~--l~ 85 (756)
+..|.+++.++.|+|++|+..+.+ |..|.++++|++|+|++|.|++..|..|..++.|+ |++.+|++.+.+|.. |.
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 346889999999999999777666 78899999999999999999988899999999995 999999999877765 99
Q ss_pred CcCCCcEEEeecCcccccCC-cccCCCCCCcEEeccCCeecccCCccccCC--CCCCEEEeeCCcccccCChhhcCcCC-
Q 004400 86 NISTLVNLTVQYNQFSGELP-EELGSLLNLEKLHLSSNNFTGELPKTFAKL--TNMKDFRISDNQFTGQIPSFIQNWTK- 161 (756)
Q Consensus 86 ~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~- 161 (756)
++++|++|+|++|.+++..+ ..|+++++|++|+|++|++++..+..+..+ ++|+.|+|++|.+.+..|..++.+++
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence 99999999999999997665 579999999999999999998889888887 88999999999888888777776665
Q ss_pred -----CcEEEccCCcCcCCCCccccC--------------------------------------CCCCCeEEccCCCCCC
Q 004400 162 -----LEKLFIQPSGLAGPIPSGIFS--------------------------------------LENLTDLRISDLNGPE 198 (756)
Q Consensus 162 -----L~~L~l~~N~l~~~~p~~~~~--------------------------------------l~~L~~L~l~~n~~~~ 198 (756)
|+.|+|++|++.+..+..+.. .++|+.|++++|.+..
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 888888888776655544332 2578888888888777
Q ss_pred CCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh--
Q 004400 199 ATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM-- 275 (756)
Q Consensus 199 ~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~-- 275 (756)
..+..+..+ +|+.|+|++|++++..|..|.++++|++|+|++|.+++..|..|..+++|+.|++++|.+++..+..+
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 360 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS
T ss_pred cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC
Confidence 766666655 48888888888887777778888888888888888887777788888888888888888875555544
Q ss_pred hcCCCeeEeecCCCCCCC
Q 004400 276 LERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 276 ~~~l~~l~ls~N~l~~~~ 293 (756)
+++|+.|++++|.+++..
T Consensus 361 l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 361 LEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CCCCCEEEEETCCSCCCS
T ss_pred CCCCCEEECCCCCCCccc
Confidence 677788888888777543
No 271
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=9.8e-30 Score=292.27 Aligned_cols=304 Identities=19% Similarity=0.217 Sum_probs=186.2
Q ss_pred eeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCC
Q 004400 12 FWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTL 90 (756)
Q Consensus 12 ~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L 90 (756)
.|.++..++.|+|++|++++..|..|.++++|++|+|++|.+++..|..|..++.|+ |++.+|++.+..+..|+++++|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 466777777777777777777777777777777777777777766667777777763 6677777765555567777777
Q ss_pred cEEEeecCcccc-cCCcccCCCCCCcEEeccCCeecccCCccc-------------------------------------
Q 004400 91 VNLTVQYNQFSG-ELPEELGSLLNLEKLHLSSNNFTGELPKTF------------------------------------- 132 (756)
Q Consensus 91 ~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~------------------------------------- 132 (756)
++|+|++|.+++ .+|..|+++++|++|+|++|++++..+..+
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~ 206 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEe
Confidence 777777777765 356777777777777777776554322221
Q ss_pred ------------------------------------------------------------------------cCCCCCCE
Q 004400 133 ------------------------------------------------------------------------AKLTNMKD 140 (756)
Q Consensus 133 ------------------------------------------------------------------------~~l~~L~~ 140 (756)
..+++|+.
T Consensus 207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~ 286 (570)
T 2z63_A 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286 (570)
T ss_dssp EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence 12233444
Q ss_pred EEeeCCcccccCChhh------------------------------------------cCcCCCcEEEccCCcCcCCC--
Q 004400 141 FRISDNQFTGQIPSFI------------------------------------------QNWTKLEKLFIQPSGLAGPI-- 176 (756)
Q Consensus 141 L~L~~N~l~~~~p~~~------------------------------------------~~l~~L~~L~l~~N~l~~~~-- 176 (756)
|++++|.++ .+|..+ ..+++|+.|++++|++++..
T Consensus 287 L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 287 FSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp EEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEE
T ss_pred EEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccc
Confidence 444444333 122111 23344555555555554321
Q ss_pred Ccc-----------------------ccCCCCCCeEEccCCCCCCCCc-cccccc-cccEEEcccccccCCCCccccCCC
Q 004400 177 PSG-----------------------IFSLENLTDLRISDLNGPEATF-PQLGNM-KMTKLILRNCNITGELPRYLGKMT 231 (756)
Q Consensus 177 p~~-----------------------~~~l~~L~~L~l~~n~~~~~~~-~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~ 231 (756)
|.. +..+++|+.|++++|.+....+ ..+... +|++|++++|.+.+..|..|.+++
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred cccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 333 4555555555555555554433 223333 467777777777666666677777
Q ss_pred CCcEEEccCCcCC-CCCCccCcCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCCcccccccCcccccc
Q 004400 232 KLKVLDLSFNRLR-GQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSAESSCQKRSVTGIVS 308 (756)
Q Consensus 232 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~~~~~~~~~~~~~~~ 308 (756)
+|+.|+|++|.++ +.+|..+..+++|+.|++++|.+++..|.++ +++++.|++++|.+++..+........+..+..
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 7777777777776 4566777777777777777777776666655 567777777777777665554444445555555
Q ss_pred cccccccC
Q 004400 309 CLRSVQCP 316 (756)
Q Consensus 309 ~~~~~~c~ 316 (756)
..+++.|.
T Consensus 526 ~~N~~~~~ 533 (570)
T 2z63_A 526 HTNPWDCS 533 (570)
T ss_dssp CSSCBCCC
T ss_pred cCCcccCC
Confidence 55555554
No 272
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.9e-29 Score=288.47 Aligned_cols=304 Identities=17% Similarity=0.180 Sum_probs=178.0
Q ss_pred eeeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccc-cCCccCcCcC
Q 004400 11 HFWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKG-PIPKYLANIS 88 (756)
Q Consensus 11 ~~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~-~~p~~l~~l~ 88 (756)
..|.+++.+++|+|++|++++..|+.|..+++|++|+|++|.+++..|..|..++.|+ |++.+|++.+ ..|..|++++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 3466777777777777777777777777777777777777777766666677777763 6777777765 3556677777
Q ss_pred CCcEEEeecCcccccC-CcccCCCCCCcEEeccCCeecccCCccccC------------------------CCCCCEEEe
Q 004400 89 TLVNLTVQYNQFSGEL-PEELGSLLNLEKLHLSSNNFTGELPKTFAK------------------------LTNMKDFRI 143 (756)
Q Consensus 89 ~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------------------------l~~L~~L~L 143 (756)
+|++|+|++|.+.+.+ +..|.++++|++|+|++|++++..|..+.. +++|+.|++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 7777777777633333 356777777777777777776666655443 344555555
Q ss_pred eCCccccc------------------------------------------------------------------------
Q 004400 144 SDNQFTGQ------------------------------------------------------------------------ 151 (756)
Q Consensus 144 ~~N~l~~~------------------------------------------------------------------------ 151 (756)
++|++++.
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 55554431
Q ss_pred -----------------------------------------CChhh-cCcCCCcEEEccCCcCcCCCC---ccccCCCCC
Q 004400 152 -----------------------------------------IPSFI-QNWTKLEKLFIQPSGLAGPIP---SGIFSLENL 186 (756)
Q Consensus 152 -----------------------------------------~p~~~-~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L 186 (756)
+|..+ .++++|++|+|++|++++..| ..+..+++|
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L 363 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccC
Confidence 11111 234555555555555554332 224445555
Q ss_pred CeEEccCCCCCCCCc--cccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccC------------
Q 004400 187 TDLRISDLNGPEATF--PQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNF------------ 251 (756)
Q Consensus 187 ~~L~l~~n~~~~~~~--~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~------------ 251 (756)
+.|++++|.+..... ..+..+ +|++|+|++|+++ .+|..+..+++|++|+|++|.+++ +|..+
T Consensus 364 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSS
T ss_pred cEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCC
Confidence 555555555544322 122222 4666666666666 455556666666666666666552 22211
Q ss_pred ------cCCCCCCeEEecCccccccCCch-hhcCCCeeEeecCCCCCCCCcccccccCcccccccccccccCC
Q 004400 252 ------DDLYDVDYIYFAGNLLTGAIPPW-MLERGDKIDLSYNNFTDGSAESSCQKRSVTGIVSCLRSVQCPK 317 (756)
Q Consensus 252 ------~~l~~L~~L~ls~N~l~~~~p~~-~~~~l~~l~ls~N~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 317 (756)
..+++|+.|++++|+++ .+|.. .++.++.|++++|++++..+........+..+....+++.|..
T Consensus 442 ~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 442 NLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred ChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 24566666666666666 44443 2566777777777777665555555555555555555555543
No 273
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.1e-28 Score=263.10 Aligned_cols=268 Identities=21% Similarity=0.260 Sum_probs=230.9
Q ss_pred ccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcE
Q 004400 14 KQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVN 92 (756)
Q Consensus 14 ~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~ 92 (756)
.....++.+++++++++ .+|..+. +.|+.|+|++|+|++..+..|..++.| .|++.+|++.+..|..|.++++|++
T Consensus 28 ~c~c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp TCEEETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCcCCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 34568899999999998 4566554 789999999999998777789999988 4899999999888999999999999
Q ss_pred EEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCccc--ccCChhhcCcCCCcEEEccCC
Q 004400 93 LTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFT--GQIPSFIQNWTKLEKLFIQPS 170 (756)
Q Consensus 93 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~l~~N 170 (756)
|+|++|+|+ .+|..+. ++|++|+|++|++++..+..|.++++|+.|++++|+++ +..+..|.++++|++|++++|
T Consensus 105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred EECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 999999998 6776655 79999999999999777778999999999999999996 377888999999999999999
Q ss_pred cCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCc
Q 004400 171 GLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPS 249 (756)
Q Consensus 171 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 249 (756)
+++ .+|..+. ++|+.|++++|.+....+..+... +|+.|+|++|.+++..+..|..+++|+.|+|++|.++ .+|.
T Consensus 182 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 182 NIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp CCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred ccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence 998 4666654 899999999999998877777665 5999999999999888888999999999999999999 7888
Q ss_pred cCcCCCCCCeEEecCccccccCCchh--------hcCCCeeEeecCCCCC
Q 004400 250 NFDDLYDVDYIYFAGNLLTGAIPPWM--------LERGDKIDLSYNNFTD 291 (756)
Q Consensus 250 ~~~~l~~L~~L~ls~N~l~~~~p~~~--------~~~l~~l~ls~N~l~~ 291 (756)
.+..+++|++|++++|++++..+..+ ...+..+++++|++..
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 89999999999999999986554443 2567789999999864
No 274
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.3e-29 Score=293.67 Aligned_cols=142 Identities=21% Similarity=0.262 Sum_probs=130.7
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEe
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTV 95 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L 95 (756)
..++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|..++.|+ |++.+|++.+..|..|+++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 5789999999999999999999999999999999999988899999999995 899999999999999999999999999
Q ss_pred ecCcccccCCcccCCCCCCcEEeccCCeecc-cCCccccCCCCCCEEEeeCCcccccCChhhcC
Q 004400 96 QYNQFSGELPEELGSLLNLEKLHLSSNNFTG-ELPKTFAKLTNMKDFRISDNQFTGQIPSFIQN 158 (756)
Q Consensus 96 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 158 (756)
++|.+++..+..|+++++|++|+|++|++++ .+|..|+++++|++|+|++|++++..|..|+.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 9999997777899999999999999999986 57999999999999999999998766654433
No 275
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=4.6e-29 Score=272.52 Aligned_cols=287 Identities=16% Similarity=0.144 Sum_probs=201.3
Q ss_pred ceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEE
Q 004400 16 KTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLT 94 (756)
Q Consensus 16 ~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~ 94 (756)
+..++.|++++|.++...+..|..+++|+.|+|++|.+++..+..|..++.| .|++.+|++.+..|..|+++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 4566777777777776555556777777777777777776666677777777 367777777777677777777777777
Q ss_pred eecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCC-------------
Q 004400 95 VQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTK------------- 161 (756)
Q Consensus 95 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~------------- 161 (756)
|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++.. +..+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc
Confidence 7777777443344577777777777777777666666777777777777777777432 334444
Q ss_pred ------CcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCc
Q 004400 162 ------LEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLK 234 (756)
Q Consensus 162 ------L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~ 234 (756)
|+.|++++|.+... |.. ..++|+.|++++|.+... ..+... +|+.|+|++|.+++..|..|..+++|+
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 44555555555422 222 236788888888888765 334443 589999999999988888899999999
Q ss_pred EEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCCcccccccCcccccccccc
Q 004400 235 VLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSAESSCQKRSVTGIVSCLRS 312 (756)
Q Consensus 235 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~~~~~~~~~~~~~~~~~~~ 312 (756)
.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+ +++++.|++++|+++.... .....+..+....++
T Consensus 276 ~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 276 RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKL---STHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCC---CTTCCCSEEECCSSC
T ss_pred EEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCc---hhhccCCEEEcCCCC
Confidence 99999999884 5666778899999999999988 556555 7889999999999887642 222334444444555
Q ss_pred ccc
Q 004400 313 VQC 315 (756)
Q Consensus 313 ~~c 315 (756)
+.|
T Consensus 351 ~~~ 353 (390)
T 3o6n_A 351 WDC 353 (390)
T ss_dssp EEH
T ss_pred ccc
Confidence 555
No 276
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=8.3e-29 Score=264.10 Aligned_cols=265 Identities=20% Similarity=0.235 Sum_probs=231.4
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEe
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTV 95 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L 95 (756)
..++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|..++.|+ |++.+|++. .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 4678899999999998888999999999999999999988899999999995 899999988 5676665 79999999
Q ss_pred ecCcccccCCcccCCCCCCcEEeccCCeec--ccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCc
Q 004400 96 QYNQFSGELPEELGSLLNLEKLHLSSNNFT--GELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLA 173 (756)
Q Consensus 96 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 173 (756)
++|++++..+..|.++++|+.|+|++|+++ +..+..|.++++|+.|++++|+++ .+|..+. ++|++|++++|+++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence 999999888888999999999999999996 377888999999999999999999 4666554 89999999999999
Q ss_pred CCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCc
Q 004400 174 GPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFD 252 (756)
Q Consensus 174 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 252 (756)
+..|..+..+++|+.|++++|.+....+..+... +|+.|+|++|.++ .+|..+..+++|++|+|++|++++..+..|.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 8889999999999999999999998887777665 6999999999999 7888899999999999999999988777775
Q ss_pred CC------CCCCeEEecCccccc--cCCchh--hcCCCeeEeecCC
Q 004400 253 DL------YDVDYIYFAGNLLTG--AIPPWM--LERGDKIDLSYNN 288 (756)
Q Consensus 253 ~l------~~L~~L~ls~N~l~~--~~p~~~--~~~l~~l~ls~N~ 288 (756)
.. +.|+.|++++|++.. ..|..+ +..++.+++++|+
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 43 789999999999863 334444 6778889998884
No 277
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=287.04 Aligned_cols=268 Identities=16% Similarity=0.152 Sum_probs=165.8
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEe
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTV 95 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L 95 (756)
..++.|+|++|++++..|..|..+++|++|+|++|+|++..|..|..++.|+ |++++|++. .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 5677777777777777667777777777777777777766677777777774 777777776 45554 6777777777
Q ss_pred ecCcccc-cCCcccCCCCCCcEEeccCCeecccCCccccCCCCC--CEEEeeCCcc--cccCChhhcCcC----------
Q 004400 96 QYNQFSG-ELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNM--KDFRISDNQF--TGQIPSFIQNWT---------- 160 (756)
Q Consensus 96 ~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l--~~~~p~~~~~l~---------- 160 (756)
++|+|++ .+|..|+++++|++|+|++|++++ ..+..+++| +.|+|++|++ .+..|..|..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 7777775 356777777777777777777764 345555555 6666666666 445555444422
Q ss_pred -------------------------------------------------------------------------CCcEEEc
Q 004400 161 -------------------------------------------------------------------------KLEKLFI 167 (756)
Q Consensus 161 -------------------------------------------------------------------------~L~~L~l 167 (756)
+|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 5666666
Q ss_pred cCCcCcCCCCccc-----cCCCCCCeEEccCCCC--------------------------CCCCccccccccccEEEccc
Q 004400 168 QPSGLAGPIPSGI-----FSLENLTDLRISDLNG--------------------------PEATFPQLGNMKMTKLILRN 216 (756)
Q Consensus 168 ~~N~l~~~~p~~~-----~~l~~L~~L~l~~n~~--------------------------~~~~~~~~~~~~L~~L~L~~ 216 (756)
++|+++|.+|..+ .++++|+.|++++|.+ ...... ....+|++|++++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHLDFSN 333 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCC-SSCCCCCEEECCS
T ss_pred ecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccch-hhCCcccEEEeEC
Confidence 6666666666665 4444444444433333 111100 1112466666666
Q ss_pred ccccCCCCccccCCCCCcEEEccCCcCCC--CCCccCcCCCCCCeEEecCccccccCCchh---hcCCCeeEeecCCCCC
Q 004400 217 CNITGELPRYLGKMTKLKVLDLSFNRLRG--QIPSNFDDLYDVDYIYFAGNLLTGAIPPWM---LERGDKIDLSYNNFTD 291 (756)
Q Consensus 217 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~---~~~l~~l~ls~N~l~~ 291 (756)
|.+++.+|..++++++|+.|+|++|++++ .+|..+..+++|++|++++|.+++.+|... ++.++.|++++|.+++
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 66666566666666666666666666664 344555666666666666666665444432 4555666666666554
No 278
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.1e-29 Score=265.64 Aligned_cols=273 Identities=16% Similarity=0.183 Sum_probs=230.7
Q ss_pred eccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccc--cCCccCcCcCCCcEEE
Q 004400 18 VNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKG--PIPKYLANISTLVNLT 94 (756)
Q Consensus 18 ~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~--~~p~~l~~l~~L~~L~ 94 (756)
..+.++.++++++ .+|..+. ++|+.|+|++|+++...+..|..++.|+ |++.+|++.. ..|..+.++++|++|+
T Consensus 8 ~~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 8 SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CCCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 4567888999988 5566554 7899999999999965556689999884 8899998873 3477788899999999
Q ss_pred eecCcccccCCcccCCCCCCcEEeccCCeecccCC-ccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCc
Q 004400 95 VQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELP-KTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLA 173 (756)
Q Consensus 95 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 173 (756)
|++|.++ .+|..+..+++|++|+|++|++++..+ ..+..+++|+.|++++|++++..+..|.++++|++|+|++|.+.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 9999999 677889999999999999999996554 57899999999999999999999999999999999999999998
Q ss_pred C-CCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccC
Q 004400 174 G-PIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNF 251 (756)
Q Consensus 174 ~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 251 (756)
+ ..|..+..+++|+.|++++|.+....+..+... +|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..|..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 7 588999999999999999999998877777665 69999999999998888889999999999999999999999999
Q ss_pred cCCC-CCCeEEecCccccccCCch-h---hcCCCeeEeecCCCCCCCC
Q 004400 252 DDLY-DVDYIYFAGNLLTGAIPPW-M---LERGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 252 ~~l~-~L~~L~ls~N~l~~~~p~~-~---~~~l~~l~ls~N~l~~~~~ 294 (756)
..++ +|++|++++|+++|.++.. + +...+.+.+..+.+.|..+
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 9885 8999999999998876532 2 3333444455555555443
No 279
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=9.3e-29 Score=263.93 Aligned_cols=264 Identities=22% Similarity=0.262 Sum_probs=227.2
Q ss_pred ceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEE
Q 004400 16 KTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLT 94 (756)
Q Consensus 16 ~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~ 94 (756)
.+.++.+++++++++ .+|..+. ++|+.|+|++|.+++..|..|..++.| .|++.+|++.+..|..|.++++|++|+
T Consensus 32 ~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 357899999999998 5676664 789999999999997778889999988 488999999988899999999999999
Q ss_pred eecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCccc--ccCChhhcCcCCCcEEEccCCcC
Q 004400 95 VQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFT--GQIPSFIQNWTKLEKLFIQPSGL 172 (756)
Q Consensus 95 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~l~~N~l 172 (756)
|++|+++ .+|..+. ++|++|+|++|++++..+..|.++++|+.|++++|+++ +..+..|..+ +|+.|++++|++
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 9999998 6776665 79999999999999776777999999999999999996 4778888888 999999999999
Q ss_pred cCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccC
Q 004400 173 AGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNF 251 (756)
Q Consensus 173 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 251 (756)
++ +|..+. ++|++|++++|.+....+..+... +|+.|+|++|.+++..+..|..+++|+.|+|++|+++ .+|..+
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 85 666655 789999999999998887777665 6999999999999888888999999999999999999 788889
Q ss_pred cCCCCCCeEEecCccccccCCchh--------hcCCCeeEeecCCCC
Q 004400 252 DDLYDVDYIYFAGNLLTGAIPPWM--------LERGDKIDLSYNNFT 290 (756)
Q Consensus 252 ~~l~~L~~L~ls~N~l~~~~p~~~--------~~~l~~l~ls~N~l~ 290 (756)
..+++|+.|++++|++++..+..+ ...++.+++++|++.
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 999999999999999986554443 245778999999987
No 280
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=4.5e-29 Score=287.84 Aligned_cols=288 Identities=15% Similarity=0.137 Sum_probs=203.3
Q ss_pred ceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEE
Q 004400 16 KTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLT 94 (756)
Q Consensus 16 ~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~ 94 (756)
+..++.+++++|.++...+..|..+++|+.|+|++|.|++..|..|..++.| .|++.+|.+.+..|..|+++++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 3556667777777776666666777777777777777776666677777777 377777777777777777777777777
Q ss_pred eecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEE--------
Q 004400 95 VQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLF-------- 166 (756)
Q Consensus 95 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~-------- 166 (756)
|++|.|++..+..|+++++|++|+|++|++++..|..|..+++|+.|+|++|++++.. ++.+++|+.|+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 7777777554455677777777777777777777777777777777777777777542 33344444444
Q ss_pred -----------ccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCc
Q 004400 167 -----------IQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLK 234 (756)
Q Consensus 167 -----------l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~ 234 (756)
+++|.+... +..+ .++|+.|++++|.+... ..+... +|+.|+|++|.+++.+|..|+.+++|+
T Consensus 207 l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 444444422 2211 25788888888887764 334443 589999999999988888899999999
Q ss_pred EEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCCcccccccCcccccccccc
Q 004400 235 VLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSAESSCQKRSVTGIVSCLRS 312 (756)
Q Consensus 235 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~~~~~~~~~~~~~~~~~~~ 312 (756)
.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|.++ +++|+.|++++|.+++.+.. ....+..+....++
T Consensus 282 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 282 RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSHND 356 (597)
T ss_dssp EEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCC---TTCCCSEEECCSSC
T ss_pred EEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChh---hcCCCCEEEeeCCC
Confidence 99999999985 5767778899999999999998 567665 78899999999998876422 22344444455555
Q ss_pred cccC
Q 004400 313 VQCP 316 (756)
Q Consensus 313 ~~c~ 316 (756)
+.|.
T Consensus 357 ~~~~ 360 (597)
T 3oja_B 357 WDCN 360 (597)
T ss_dssp EEHH
T ss_pred CCCh
Confidence 5554
No 281
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=9e-29 Score=290.47 Aligned_cols=283 Identities=18% Similarity=0.215 Sum_probs=245.2
Q ss_pred eeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCc--cCcccccC--Ccc-eeeccCccccccCCccCcC
Q 004400 12 FWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGT--IPSQWASL--PLL-NISLIANRLKGPIPKYLAN 86 (756)
Q Consensus 12 ~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l--~~L-~l~l~~n~~~~~~p~~l~~ 86 (756)
.|..+..++.|+|++|++++..+..|..+++|+.|+|++|.++.. .+..|..+ +.| .+++.+|++.+..|..|.+
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 456778888888999999888888888889999999988875432 22334433 345 5889999999999999999
Q ss_pred cCCCcEEEeecCcccccCC-cccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCccc--ccCChhhcCcCCCc
Q 004400 87 ISTLVNLTVQYNQFSGELP-EELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFT--GQIPSFIQNWTKLE 163 (756)
Q Consensus 87 l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~ 163 (756)
+++|+.|+|++|.+++.+| ..|.++++|++|+|++|++++..+..|..+++|+.|++++|.++ +.+|..|.++++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 9999999999999998776 68999999999999999999889999999999999999999987 57899999999999
Q ss_pred EEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCcc--------ccccc-cccEEEcccccccCCCCccccCCCCCc
Q 004400 164 KLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFP--------QLGNM-KMTKLILRNCNITGELPRYLGKMTKLK 234 (756)
Q Consensus 164 ~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~--------~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~ 234 (756)
.|+|++|++++..+..+..+++|++|++++|.+...... .+... +|+.|+|++|+++...+..|.++++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 999999999988888899999999999999999875322 24443 699999999999966666799999999
Q ss_pred EEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh---hcCCCeeEeecCCCCCCCC
Q 004400 235 VLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM---LERGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 235 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~---~~~l~~l~ls~N~l~~~~~ 294 (756)
.|+|++|++++..+..|..+++|+.|++++|++++..|..+ +++++.+++++|++.|.+.
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999998888889999999999999999997666543 6899999999999998754
No 282
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=7.9e-29 Score=288.29 Aligned_cols=306 Identities=17% Similarity=0.162 Sum_probs=226.5
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEe
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTV 95 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L 95 (756)
+.++.|+|++|+|++..+..|.++++|++|+|++|+|++..|.+|..++.|+ |+|.+|++.+..+..|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 3678889999999988888899999999999999999877778888888884 888888888777778899999999999
Q ss_pred ecCcccccCCcccCCCCCCcEEeccCCeecc-cCCccccCCCCCCEEEeeCCcccccCChhhcCcC--------------
Q 004400 96 QYNQFSGELPEELGSLLNLEKLHLSSNNFTG-ELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWT-------------- 160 (756)
Q Consensus 96 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-------------- 160 (756)
++|+|++..+..|+++++|++|+|++|++++ .+|..++.+++|++|+|++|+|++..+..|..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999987777778899999999999999875 3577888889999999998888765544332221
Q ss_pred --------------------------------------------------------------------------------
Q 004400 161 -------------------------------------------------------------------------------- 160 (756)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (756)
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence
Q ss_pred -------------------------------------CCcEEEccCCcCcCCCC-------------------ccccCCC
Q 004400 161 -------------------------------------KLEKLFIQPSGLAGPIP-------------------SGIFSLE 184 (756)
Q Consensus 161 -------------------------------------~L~~L~l~~N~l~~~~p-------------------~~~~~l~ 184 (756)
.|+.|++.+|.+.+..+ .....++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 11222222222211000 0011234
Q ss_pred CCCeEEccCCCC--------------------------------------------------------------------
Q 004400 185 NLTDLRISDLNG-------------------------------------------------------------------- 196 (756)
Q Consensus 185 ~L~~L~l~~n~~-------------------------------------------------------------------- 196 (756)
+|+.|++++|.+
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 444444444433
Q ss_pred ------CCCCccccccc-cccEEEcccccc-cCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCcccc
Q 004400 197 ------PEATFPQLGNM-KMTKLILRNCNI-TGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLT 268 (756)
Q Consensus 197 ------~~~~~~~~~~~-~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 268 (756)
....+..+... .++.|+|++|.+ .+.+|..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|+
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 22222222222 477888888874 4467888999999999999999999999999999999999999999999
Q ss_pred ccCCchh--hcCCCeeEeecCCCCCCCCcccccc-cCcccccccccccccCCccccc
Q 004400 269 GAIPPWM--LERGDKIDLSYNNFTDGSAESSCQK-RSVTGIVSCLRSVQCPKTYYSL 322 (756)
Q Consensus 269 ~~~p~~~--~~~l~~l~ls~N~l~~~~~~~~~~~-~~~~~~~~~~~~~~c~~~~~~~ 322 (756)
+..|..+ +++|+.||+++|++++..+...... ..+..+....+++.|.+...++
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~ 588 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 588 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHH
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHH
Confidence 7777666 7899999999999998877766554 4566677788899998765433
No 283
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.4e-29 Score=274.74 Aligned_cols=271 Identities=19% Similarity=0.230 Sum_probs=231.3
Q ss_pred eeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCC
Q 004400 12 FWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTL 90 (756)
Q Consensus 12 ~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L 90 (756)
.+.++..++.|+|++|++++..+..|..+++|+.|+|++|.+++..|..|..++.|+ |++.+|++....+..|.++++|
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 367889999999999999998888999999999999999999988888999999884 8999999996655668999999
Q ss_pred cEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCC-------------------CCEEEeeCCccccc
Q 004400 91 VNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTN-------------------MKDFRISDNQFTGQ 151 (756)
Q Consensus 91 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-------------------L~~L~L~~N~l~~~ 151 (756)
++|+|++|.+++..+..|..+++|++|+|++|++++.. +..+++ |+.|++++|+++..
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeec
Confidence 99999999999888888999999999999999998543 334444 45555555555532
Q ss_pred CChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCC
Q 004400 152 IPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKM 230 (756)
Q Consensus 152 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l 230 (756)
|.. ..++|+.|++++|++++. ..+..+++|++|++++|.+....+..+..+ +|+.|+|++|++++ +|..+..+
T Consensus 221 -~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l 294 (390)
T 3o6n_A 221 -RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 294 (390)
T ss_dssp -ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCC
T ss_pred -ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCC
Confidence 222 247899999999999863 688999999999999999999877777765 69999999999995 56667889
Q ss_pred CCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchhhcCCCeeEeecCCCCCCC
Q 004400 231 TKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWMLERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 231 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~l~ls~N~l~~~~ 293 (756)
++|+.|+|++|+++ .+|..+..+++|+.|++++|+++. +|...++.++.|++++|++.|..
T Consensus 295 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LKLSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CCCCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eCchhhccCCEEEcCCCCccchh
Confidence 99999999999999 577778899999999999999984 46556889999999999998753
No 284
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.2e-29 Score=290.51 Aligned_cols=271 Identities=19% Similarity=0.224 Sum_probs=233.4
Q ss_pred eeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCC
Q 004400 12 FWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTL 90 (756)
Q Consensus 12 ~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L 90 (756)
.|.++..++.|+|++|++++..|..|..+++|+.|+|++|.|++..|..|+.++.|+ |++.+|++.+..+..|+++++|
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 467889999999999999999999999999999999999999998888999999994 8999999997777778999999
Q ss_pred cEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEE-------------------EeeCCccccc
Q 004400 91 VNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDF-------------------RISDNQFTGQ 151 (756)
Q Consensus 91 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L-------------------~L~~N~l~~~ 151 (756)
++|+|++|.|++..|..|+++++|++|+|++|++++.. +..+++|+.| ++++|.++..
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCccccc
Confidence 99999999999988889999999999999999999653 3344555554 5555554422
Q ss_pred CChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCC
Q 004400 152 IPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKM 230 (756)
Q Consensus 152 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l 230 (756)
+..+ .++|+.|+|++|.+++ +..+..+++|+.|++++|.+....+..+..+ +|+.|+|++|.+++ +|..+..+
T Consensus 227 -~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 227 -RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp -ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred -cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence 2221 3689999999999996 4789999999999999999999888877766 59999999999996 56677889
Q ss_pred CCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchhhcCCCeeEeecCCCCCCC
Q 004400 231 TKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWMLERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 231 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~l~ls~N~l~~~~ 293 (756)
++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++ +|...++.|+.|++++|++.|..
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LKLSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CCCCTTCCCSEEECCSSCEEHHH
T ss_pred CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cChhhcCCCCEEEeeCCCCCChh
Confidence 99999999999999 688888999999999999999985 45556889999999999998753
No 285
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=4.4e-29 Score=286.16 Aligned_cols=270 Identities=19% Similarity=0.151 Sum_probs=201.8
Q ss_pred ccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcE
Q 004400 14 KQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVN 92 (756)
Q Consensus 14 ~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~ 92 (756)
..+...+.+++++|++++ +|..+. ++|+.|+|++|.|++..|..|..++.|+ |++.+|++.+..|..|.++++|++
T Consensus 28 ~~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 28 FSNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp -----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 444555789999999996 676665 8999999999999988889999999995 899999999999999999999999
Q ss_pred EEeecCcccccCCcccCCCCCCcEEeccCCeecc-cCCccccCCCCCCEEEeeCCcccccCChhhcCcCCC--cEEEccC
Q 004400 93 LTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTG-ELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKL--EKLFIQP 169 (756)
Q Consensus 93 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~l~~ 169 (756)
|+|++|+|+ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|+|++|++++. .+..+++| +.|++++
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 999999999 67766 89999999999999996 3568999999999999999998853 34445555 7777777
Q ss_pred CcC--cCCCCccccCCC---------------------------------------------------------------
Q 004400 170 SGL--AGPIPSGIFSLE--------------------------------------------------------------- 184 (756)
Q Consensus 170 N~l--~~~~p~~~~~l~--------------------------------------------------------------- 184 (756)
|++ ++..|..+..+.
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 766 555454444322
Q ss_pred ------------------CCCeEEccCCCCCCCCcccc------------------------------------------
Q 004400 185 ------------------NLTDLRISDLNGPEATFPQL------------------------------------------ 204 (756)
Q Consensus 185 ------------------~L~~L~l~~n~~~~~~~~~~------------------------------------------ 204 (756)
+|++|++++|.+....+..+
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 44444554444442211111
Q ss_pred -----------cc-ccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCC--CCccCcCCCCCCeEEecCcccccc
Q 004400 205 -----------GN-MKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQ--IPSNFDDLYDVDYIYFAGNLLTGA 270 (756)
Q Consensus 205 -----------~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~ls~N~l~~~ 270 (756)
.. .+|++|++++|.+++.+|..+.++++|+.|+|++|++++. +|..|..+++|+.|++++|.+++.
T Consensus 339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred cCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 22 2477888888888877777778888888888888887752 245677778888888888888765
Q ss_pred CCchh---hcCCCeeEeecCCCCCC
Q 004400 271 IPPWM---LERGDKIDLSYNNFTDG 292 (756)
Q Consensus 271 ~p~~~---~~~l~~l~ls~N~l~~~ 292 (756)
+|... +++++.|++++|.+++.
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred cChhhhcCcccCCEEECCCCCCCcc
Confidence 66543 56777777777777653
No 286
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=9.3e-29 Score=263.92 Aligned_cols=264 Identities=19% Similarity=0.242 Sum_probs=231.1
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEe
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTV 95 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L 95 (756)
..++.|+|++|++++..|..|.++++|+.|+|++|.+++..|..|..++.|+ |++.+|++. .+|..+. ++|++|+|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 4688999999999999889999999999999999999988899999999995 899999988 6666665 89999999
Q ss_pred ecCcccccCCcccCCCCCCcEEeccCCeec--ccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCc
Q 004400 96 QYNQFSGELPEELGSLLNLEKLHLSSNNFT--GELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLA 173 (756)
Q Consensus 96 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 173 (756)
++|++++..+..|.++++|+.|+|++|+++ +..+..+..+ +|+.|++++|++++ +|..+. ++|++|+|++|+++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence 999999777778999999999999999996 4778888888 99999999999995 666554 79999999999999
Q ss_pred CCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCc
Q 004400 174 GPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFD 252 (756)
Q Consensus 174 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 252 (756)
+..+..+..+++|+.|++++|.+....+..+... +|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..|.
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 8888999999999999999999999888777665 6999999999999 7888899999999999999999987777776
Q ss_pred CC------CCCCeEEecCcccc--ccCCchh--hcCCCeeEeecCC
Q 004400 253 DL------YDVDYIYFAGNLLT--GAIPPWM--LERGDKIDLSYNN 288 (756)
Q Consensus 253 ~l------~~L~~L~ls~N~l~--~~~p~~~--~~~l~~l~ls~N~ 288 (756)
.+ ++|+.|++++|++. +..|..+ ++.++.+++++|.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 54 67999999999987 4555555 7788999998874
No 287
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=6.5e-29 Score=285.45 Aligned_cols=183 Identities=25% Similarity=0.211 Sum_probs=147.1
Q ss_pred CCcEEeccCCeecccC--CccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCC-ccccCCCCCCeE
Q 004400 113 NLEKLHLSSNNFTGEL--PKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIP-SGIFSLENLTDL 189 (756)
Q Consensus 113 ~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L 189 (756)
+|++|+|++|++++.. |..+..+++|+.|++++|++++..+ .+.++++|+.|++++|.+.+..+ ..+..+++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 3344444444443222 3445556666677777777664433 37888888888888888887666 578899999999
Q ss_pred EccCCCCCCCCccccccc-cccEEEccccccc-CCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccc
Q 004400 190 RISDLNGPEATFPQLGNM-KMTKLILRNCNIT-GELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLL 267 (756)
Q Consensus 190 ~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 267 (756)
++++|.+....+..+..+ +|+.|+|++|.++ +.+|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|.+
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 999999998887777665 6999999999998 67899999999999999999999998899999999999999999999
Q ss_pred cccCCchh--hcCCCeeEeecCCCCCCCCcc
Q 004400 268 TGAIPPWM--LERGDKIDLSYNNFTDGSAES 296 (756)
Q Consensus 268 ~~~~p~~~--~~~l~~l~ls~N~l~~~~~~~ 296 (756)
++..|..+ ++.++.+++++|+++|..+..
T Consensus 507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 98777655 789999999999999876543
No 288
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.96 E-value=2.9e-30 Score=293.60 Aligned_cols=186 Identities=17% Similarity=0.135 Sum_probs=132.1
Q ss_pred CcccCCCCccEEEee-ccCCcEEEEEEccccC----------cccHHHHHHHHHHHHhC-CCCceeeEeeEEEeCCeEEE
Q 004400 422 NNIGEGGFGPVYKGL-LADGTAIAVKQLSSKS----------KQGNREFINEIGMISAL-QHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 422 ~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 489 (756)
...+.|++|.++.++ .-.|+.||||++.... ....++|.+|+++|+++ .|+||+++++++.+++..||
T Consensus 240 ~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yL 319 (569)
T 4azs_A 240 NQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWL 319 (569)
T ss_dssp CC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEE
T ss_pred hccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEE
Confidence 356778888777766 4568999999986531 12335799999999999 79999999999999999999
Q ss_pred EEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCccc
Q 004400 490 IYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEE 569 (756)
Q Consensus 490 V~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~ 569 (756)
||||++|++|.++|... ..++.. +|+.||+.||+|+|++| ||||||||+|||+++++.+||+|||+|+.....
T Consensus 320 VMEyv~G~~L~d~i~~~-~~l~~~---~I~~QIl~AL~ylH~~G---IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~ 392 (569)
T 4azs_A 320 VMEKLPGRLLSDMLAAG-EEIDRE---KILGSLLRSLAALEKQG---FWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392 (569)
T ss_dssp EEECCCSEEHHHHHHTT-CCCCHH---HHHHHHHHHHHHHHHTT---CEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred EEecCCCCcHHHHHHhC-CCCCHH---HHHHHHHHHHHHHHHCC---ceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence 99999999999999754 356653 58899999999999997 999999999999999999999999999876543
Q ss_pred CcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCC
Q 004400 570 NTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSN 616 (756)
Q Consensus 570 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p 616 (756)
.. .....+||++|||||++.+ .+..++|+||+|++++++.++..+
T Consensus 393 ~~-~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 393 CS-WPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp -C-CSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred Cc-cccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 33 2345789999999999865 567789999999998887665443
No 289
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.9e-31 Score=297.68 Aligned_cols=234 Identities=18% Similarity=0.118 Sum_probs=190.3
Q ss_pred ccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEeecCccc
Q 004400 23 VLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTVQYNQFS 101 (756)
Q Consensus 23 ~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~ 101 (756)
.+...++...+......+++|+.|+|++|.|++..|..|..++.|+ |++.+|++++..| |..+++|+.|+|++|.|+
T Consensus 16 ~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp SCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE
T ss_pred cCchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC
Confidence 3444555544444444556899999999999988888899998884 8899999887766 889999999999999998
Q ss_pred ccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCcccc
Q 004400 102 GELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIF 181 (756)
Q Consensus 102 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 181 (756)
+..+ .++|++|+|++|+|++..+. .+++|+.|+|++|++++..|..|+++++|+.|+|++|.+++..|..+.
T Consensus 94 ~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 94 ELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp EEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred CCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 5432 37999999999999966554 467899999999999988888999999999999999999988888876
Q ss_pred -CCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeE
Q 004400 182 -SLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYI 260 (756)
Q Consensus 182 -~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 260 (756)
.+++|+.|++++|.+...... ....+|+.|+|++|.+++..| .|..+++|+.|+|++|.|++ +|..+..+++|+.|
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L 242 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHF 242 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEE
T ss_pred hhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEE
Confidence 789999999999988876332 234468899999999986544 48888999999999999985 67778888899999
Q ss_pred EecCccccc
Q 004400 261 YFAGNLLTG 269 (756)
Q Consensus 261 ~ls~N~l~~ 269 (756)
++++|++.+
T Consensus 243 ~l~~N~l~c 251 (487)
T 3oja_A 243 DLRGNGFHC 251 (487)
T ss_dssp ECTTCCBCH
T ss_pred EcCCCCCcC
Confidence 999998873
No 290
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.7e-28 Score=282.63 Aligned_cols=284 Identities=19% Similarity=0.172 Sum_probs=228.6
Q ss_pred eeeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCC
Q 004400 11 HFWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANIST 89 (756)
Q Consensus 11 ~~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~ 89 (756)
..|.+++.|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..++.|+ |++.+|++.+..+..|+++++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 4689999999999999999998889999999999999999999977778899999994 899999999888888999999
Q ss_pred CcEEEeecCcccc-cCCcccCCCCCCcEEeccCCeecccCCccccC----------------------------------
Q 004400 90 LVNLTVQYNQFSG-ELPEELGSLLNLEKLHLSSNNFTGELPKTFAK---------------------------------- 134 (756)
Q Consensus 90 L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~---------------------------------- 134 (756)
|++|+|++|.|++ .+|..++.+++|++|+|++|+|++..+..|..
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l 229 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 229 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhh
Confidence 9999999999985 45788899999999999999887543332211
Q ss_pred --------------------------------------------------------------------------------
Q 004400 135 -------------------------------------------------------------------------------- 134 (756)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (756)
T Consensus 230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 309 (635)
T 4g8a_A 230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS 309 (635)
T ss_dssp EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCS
T ss_pred hhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccc
Confidence
Q ss_pred ------------------------------------------------------------CCCCCEEEeeCCccccc--C
Q 004400 135 ------------------------------------------------------------LTNMKDFRISDNQFTGQ--I 152 (756)
Q Consensus 135 ------------------------------------------------------------l~~L~~L~L~~N~l~~~--~ 152 (756)
+++|+.|++++|.+... .
T Consensus 310 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 310 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp EEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred cccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccc
Confidence 12233333333332210 0
Q ss_pred ------------------------------------------------ChhhcCcCCCcEEEccCCcCcCCCCccccCCC
Q 004400 153 ------------------------------------------------PSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLE 184 (756)
Q Consensus 153 ------------------------------------------------p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 184 (756)
+..|.++++|+.++++.|.+.+..+..+..++
T Consensus 390 ~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence 01233344455555555555555666777888
Q ss_pred CCCeEEccCCCCCC-CCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEe
Q 004400 185 NLTDLRISDLNGPE-ATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYF 262 (756)
Q Consensus 185 ~L~~L~l~~n~~~~-~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 262 (756)
+|+.|++++|.... ..+..+..+ +|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|+.|+|
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 99999999987544 455556655 6999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCchh--h-cCCCeeEeecCCCCCCCC
Q 004400 263 AGNLLTGAIPPWM--L-ERGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 263 s~N~l~~~~p~~~--~-~~l~~l~ls~N~l~~~~~ 294 (756)
++|+|++..|..+ + ++++.|++++|++.|.+.
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999998888876 3 689999999999998653
No 291
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=6.2e-28 Score=268.89 Aligned_cols=249 Identities=16% Similarity=0.166 Sum_probs=197.7
Q ss_pred cccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEeecC
Q 004400 20 QKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTVQYN 98 (756)
Q Consensus 20 ~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N 98 (756)
..++..+++++ .+|..+. ++|+.|+|++|+|++..|..|..++.|+ |++.+|++.+..|..|.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 56667777777 4566554 6788888888888877788888888884 788888888888888888888888888888
Q ss_pred cccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeC-CcccccCChhhcCcCCCcEEEccCCcCcCCCC
Q 004400 99 QFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISD-NQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIP 177 (756)
Q Consensus 99 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 177 (756)
+|++..+..|.++++|++|+|++|+++...+..|.++++|+.|+|++ |.+....+..|.++++|++|+|++|++++ +|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc
Confidence 88866667788888888888888888866666788888888888888 44554445578888888888888888874 33
Q ss_pred ccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCC
Q 004400 178 SGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYD 256 (756)
Q Consensus 178 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 256 (756)
.+..+++|+.|++++|.+....+..+..+ +|+.|+|++|++++..+..|.++++|+.|+|++|+|++..+..|..+++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 47778888888888888888777776665 5888888888888877888888888888888888888777777788888
Q ss_pred CCeEEecCccccccCCc
Q 004400 257 VDYIYFAGNLLTGAIPP 273 (756)
Q Consensus 257 L~~L~ls~N~l~~~~p~ 273 (756)
|+.|+|++|++.|.+.-
T Consensus 292 L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 292 LVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CCEEECCSSCEECSTTT
T ss_pred CCEEEccCCCcCCCCCc
Confidence 88888888888776653
No 292
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.2e-28 Score=267.35 Aligned_cols=249 Identities=16% Similarity=0.172 Sum_probs=192.6
Q ss_pred cccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEeecC
Q 004400 20 QKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTVQYN 98 (756)
Q Consensus 20 ~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N 98 (756)
..++..+++++ .+|..+. ++++.|+|++|+|++..+..|..++.|+ |++.+|++.+..+..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 45667777777 5566555 6788888888888877777888888774 788888888777788888888888888888
Q ss_pred cccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCC-cccccCChhhcCcCCCcEEEccCCcCcCCCC
Q 004400 99 QFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDN-QFTGQIPSFIQNWTKLEKLFIQPSGLAGPIP 177 (756)
Q Consensus 99 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 177 (756)
+|++..+..|..+++|++|+|++|+++...+..|.++++|+.|+|++| .+....+..|.++++|++|+|++|+++ .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 888666667888888888888888888666667888888888888884 455444557888888888888888887 444
Q ss_pred ccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCC
Q 004400 178 SGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYD 256 (756)
Q Consensus 178 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 256 (756)
.+..+++|+.|++++|.+....+..+..+ +|+.|+|++|++++..+..|.++++|+.|+|++|+|++..+..|..+++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 47778888888888888887776666665 5888888888888777777888888888888888888777777788888
Q ss_pred CCeEEecCccccccCCc
Q 004400 257 VDYIYFAGNLLTGAIPP 273 (756)
Q Consensus 257 L~~L~ls~N~l~~~~p~ 273 (756)
|+.|+|++|++.|.+.-
T Consensus 281 L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 281 LERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCEEECCSSCEECSSTT
T ss_pred CCEEEcCCCCccCCCCc
Confidence 88888888888776653
No 293
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.9e-28 Score=280.33 Aligned_cols=145 Identities=18% Similarity=0.190 Sum_probs=129.9
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEe
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTV 95 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L 95 (756)
..++.|+|++|++++..|..|.++++|++|+|++|++++..|..|..++.|+ |++.+|++.+..|..|+++++|++|+|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5799999999999999999999999999999999999988889999999994 899999999888888999999999999
Q ss_pred ecCcccc-cCCcccCCCCCCcEEeccCCeecccCC-ccccCCCCCCEEEeeCCcccccCChhhcCcCC
Q 004400 96 QYNQFSG-ELPEELGSLLNLEKLHLSSNNFTGELP-KTFAKLTNMKDFRISDNQFTGQIPSFIQNWTK 161 (756)
Q Consensus 96 ~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 161 (756)
++|.+++ ..|..|+++++|++|+|++|++.+.+| ..|.++++|++|++++|++++..|..++++++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 9999986 356789999999999999999544554 68999999999999999999888887765433
No 294
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=263.64 Aligned_cols=274 Identities=19% Similarity=0.174 Sum_probs=228.1
Q ss_pred ceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEE
Q 004400 16 KTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLT 94 (756)
Q Consensus 16 ~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~ 94 (756)
|......++++++++ .+|..+. ++|+.|+|++|+|++..+..|..++.|+ |++.+|++.+..|..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 334445678888888 5566555 6899999999999977777899999984 89999999998899999999999999
Q ss_pred eecCcccccCCcccCCCCCCcEEeccCCeecccCC-ccccCCCCCCEEEeeCC-cccccCChhhcCcCCCcEEEccCCcC
Q 004400 95 VQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELP-KTFAKLTNMKDFRISDN-QFTGQIPSFIQNWTKLEKLFIQPSGL 172 (756)
Q Consensus 95 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~l~~N~l 172 (756)
|++|+|++..+..|+++++|++|+|++|++++..+ ..|..+++|+.|++++| .++...+..|.++++|++|++++|++
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 99999996555569999999999999999994333 47899999999999999 57777788999999999999999999
Q ss_pred cCCCCccccCCCCCCeEEccCCCCCCCCcccccc-ccccEEEcccccccCCCCcccc---CCCCCcEEEccCCcCCC---
Q 004400 173 AGPIPSGIFSLENLTDLRISDLNGPEATFPQLGN-MKMTKLILRNCNITGELPRYLG---KMTKLKVLDLSFNRLRG--- 245 (756)
Q Consensus 173 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~--- 245 (756)
++..|..+..+++|++|++++|.+.......+.. .+|+.|++++|.+++..+..+. ....++.++|++|.+++
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 9888999999999999999999987665544443 3699999999999987665443 46778889999988876
Q ss_pred -CCCccCcCCCCCCeEEecCccccccCCchh---hcCCCeeEeecCCCCCCC
Q 004400 246 -QIPSNFDDLYDVDYIYFAGNLLTGAIPPWM---LERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 246 -~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~---~~~l~~l~ls~N~l~~~~ 293 (756)
.+|..+..+++|+.|++++|+++ .+|..+ +++++.|++++|++.|..
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 36777888999999999999998 666654 678899999999988754
No 295
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.3e-27 Score=254.27 Aligned_cols=224 Identities=25% Similarity=0.335 Sum_probs=156.5
Q ss_pred CCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEe
Q 004400 40 LTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLH 118 (756)
Q Consensus 40 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 118 (756)
.++++.|+|++|.++ .+|..+..++.|+ |++.+|++. .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467788888888887 6676677777773 677777777 77777777788888888888777 6777777788888888
Q ss_pred ccCCeecccCCccccC---------CCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeE
Q 004400 119 LSSNNFTGELPKTFAK---------LTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDL 189 (756)
Q Consensus 119 L~~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 189 (756)
|++|++.+.+|..+.. +++|++|+|++|+++ .+|..|+++++|++|+|++|++++ +|..+..+++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 8877777777766554 777777777777777 677777777777777777777774 56667777777777
Q ss_pred EccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCcccc
Q 004400 190 RISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLT 268 (756)
Q Consensus 190 ~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 268 (756)
++++|++....+..+..+ +|+.|+|++|.+.+.+|..+.++++|+.|+|++|.+.+.+|..+..+++|+.+++..|.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 766665555544444443 3555666666666666666666666666666666666666666666666666666655443
No 296
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.3e-29 Score=266.70 Aligned_cols=256 Identities=20% Similarity=0.239 Sum_probs=221.3
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEe
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTV 95 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L 95 (756)
..++.|+|++|++++..+..|..+++|+.|+|++|.+++..|..|..++.| .|++.+|++.+..+..|.++++|++|+|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 378999999999998888899999999999999999998888899999998 5899999999766666999999999999
Q ss_pred ecCcccccCC-cccCCCCCCcEEeccCC-eecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCc
Q 004400 96 QYNQFSGELP-EELGSLLNLEKLHLSSN-NFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLA 173 (756)
Q Consensus 96 ~~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 173 (756)
++|++++..+ ..|.++++|++|+|++| .++...+..|.++++|++|++++|++++..|..|.++++|++|++++|++.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999995444 47999999999999999 577777888999999999999999999988999999999999999999997
Q ss_pred CCCCccccCCCCCCeEEccCCCCCCCCcccccc----ccccEEEcccccccC----CCCccccCCCCCcEEEccCCcCCC
Q 004400 174 GPIPSGIFSLENLTDLRISDLNGPEATFPQLGN----MKMTKLILRNCNITG----ELPRYLGKMTKLKVLDLSFNRLRG 245 (756)
Q Consensus 174 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~ 245 (756)
...+..+..+++|+.|++++|.+....+..+.. ..++.++|+++.+++ .+|..+..+++|+.|+|++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 433334456899999999999999876655432 247788888888776 467889999999999999999995
Q ss_pred CCCccCcCCCCCCeEEecCccccccCC
Q 004400 246 QIPSNFDDLYDVDYIYFAGNLLTGAIP 272 (756)
Q Consensus 246 ~~p~~~~~l~~L~~L~ls~N~l~~~~p 272 (756)
..+..|..+++|++|++++|+++|.+|
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 444446999999999999999999887
No 297
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.8e-27 Score=265.03 Aligned_cols=249 Identities=16% Similarity=0.108 Sum_probs=220.0
Q ss_pred CCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEecc
Q 004400 42 FLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLS 120 (756)
Q Consensus 42 ~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 120 (756)
....++.+++.++ .+|..+. +.+ .|++.+|++.+..|..|.++++|+.|+|++|+|++..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4578999999998 6776554 455 58899999999999999999999999999999999888999999999999999
Q ss_pred CCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCC-cCcCCCCccccCCCCCCeEEccCCCCCCC
Q 004400 121 SNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPS-GLAGPIPSGIFSLENLTDLRISDLNGPEA 199 (756)
Q Consensus 121 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 199 (756)
+|+|++..+..|..+++|++|+|++|+|+...+..|.++++|+.|+|++| .+....+..|.++++|+.|++++|.+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99999777778999999999999999999877889999999999999995 45544445788999999999999999876
Q ss_pred CccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh--hc
Q 004400 200 TFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LE 277 (756)
Q Consensus 200 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~ 277 (756)
+ ......+|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+ ++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3 22333469999999999999999999999999999999999999999999999999999999999996555544 78
Q ss_pred CCCeeEeecCCCCCCCC
Q 004400 278 RGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 278 ~l~~l~ls~N~l~~~~~ 294 (756)
+++.|++++|++.|...
T Consensus 291 ~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 291 YLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TCCEEECCSSCEECSTT
T ss_pred CCCEEEccCCCcCCCCC
Confidence 89999999999988654
No 298
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.5e-27 Score=256.29 Aligned_cols=266 Identities=20% Similarity=0.260 Sum_probs=224.5
Q ss_pred eeeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCC
Q 004400 11 HFWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANIST 89 (756)
Q Consensus 11 ~~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~ 89 (756)
+.+..+..+++|+|++|++++..+ +..+++|+.|+|++|.++. ++ .+..++.| .+++.+|++.+..+ +.++++
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~ 133 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP--LANLTK 133 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG--GTTCTT
T ss_pred hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh--hccCCc
Confidence 347788999999999999997644 9999999999999999985 44 68888888 48899999886544 889999
Q ss_pred CcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccC
Q 004400 90 LVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQP 169 (756)
Q Consensus 90 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 169 (756)
|+.|++++|.....+ ..+..+++|++|++++|++.+..+ +..+++|+.|++++|++++. +. +..+++|+.|++++
T Consensus 134 L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 134 MYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYV 208 (347)
T ss_dssp CCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCS
T ss_pred eeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeeccc
Confidence 999999999766444 459999999999999999985444 88999999999999999954 33 88999999999999
Q ss_pred CcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCc
Q 004400 170 SGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPS 249 (756)
Q Consensus 170 N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 249 (756)
|.+.+..+ +..+++|+.|++++|.+....+ .....+|++|++++|.+++. ..+..+++|+.|++++|.+++. .
T Consensus 209 n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~ 281 (347)
T 4fmz_A 209 NQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--S 281 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--G
T ss_pred CCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--h
Confidence 99986544 8889999999999999988765 22334699999999999864 4688999999999999999964 4
Q ss_pred cCcCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCC
Q 004400 250 NFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 250 ~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~ 294 (756)
.+..+++|+.|++++|.+++..|..+ +++++.|++++|++++..+
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 58899999999999999988777766 7889999999999988655
No 299
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3e-27 Score=262.41 Aligned_cols=249 Identities=18% Similarity=0.150 Sum_probs=220.0
Q ss_pred CCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEecc
Q 004400 42 FLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLS 120 (756)
Q Consensus 42 ~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 120 (756)
....++.+++.++ .+|..+. +.+ .|++.+|++.+..+..|.++++|+.|+|++|+|++..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4678999999998 6776554 445 48899999999999999999999999999999998888999999999999999
Q ss_pred CCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCc-CcCCCCccccCCCCCCeEEccCCCCCCC
Q 004400 121 SNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSG-LAGPIPSGIFSLENLTDLRISDLNGPEA 199 (756)
Q Consensus 121 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 199 (756)
+|+|+...+..|..+++|++|+|++|+|+...+..|.++++|+.|+|++|+ +....+..|.++++|+.|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 999997777789999999999999999998888899999999999999955 4444455789999999999999999876
Q ss_pred CccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh--hc
Q 004400 200 TFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LE 277 (756)
Q Consensus 200 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~ 277 (756)
+ ......+|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+ ++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 4 22233469999999999999999999999999999999999999999999999999999999999996655554 78
Q ss_pred CCCeeEeecCCCCCCCC
Q 004400 278 RGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 278 ~l~~l~ls~N~l~~~~~ 294 (756)
+++.|++++|++.|...
T Consensus 280 ~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 280 HLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TCCEEECCSSCEECSST
T ss_pred CCCEEEcCCCCccCCCC
Confidence 89999999999988654
No 300
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1e-27 Score=249.97 Aligned_cols=250 Identities=17% Similarity=0.173 Sum_probs=156.0
Q ss_pred cccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEeecC
Q 004400 20 QKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTVQYN 98 (756)
Q Consensus 20 ~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N 98 (756)
..++.++++++ .+|..+ .++|+.|+|++|.+++..+..|..++.| .|++.+|++.+..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666777776 345433 3677777777777775544555555555 2555555555555555555555555555555
Q ss_pred c-ccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCC
Q 004400 99 Q-FSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIP 177 (756)
Q Consensus 99 ~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 177 (756)
. ++...|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|+++++|++|+|++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 4 444434555555555555555555554445555555555555555555554444445555555555555555553333
Q ss_pred ccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCC
Q 004400 178 SGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDV 257 (756)
Q Consensus 178 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 257 (756)
..+..+++ |+.|+|++|.+++..|..|.++++|+.|+|++|.+++..+..+..+++|
T Consensus 171 ~~~~~l~~-----------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 171 RAFRGLHS-----------------------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTTTCTT-----------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred HHhcCccc-----------------------cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 33444444 5556666777877778889999999999999999998777778999999
Q ss_pred CeEEecCccccccCCc-hhhcCCCeeEeecCCCCCCCCc
Q 004400 258 DYIYFAGNLLTGAIPP-WMLERGDKIDLSYNNFTDGSAE 295 (756)
Q Consensus 258 ~~L~ls~N~l~~~~p~-~~~~~l~~l~ls~N~l~~~~~~ 295 (756)
+.|++++|++.+..+. ++..+++.+..+.|.+.|..+.
T Consensus 228 ~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 228 QYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESG
T ss_pred CEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCch
Confidence 9999999999887764 3345555566667776655443
No 301
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=7.1e-27 Score=250.93 Aligned_cols=283 Identities=19% Similarity=0.255 Sum_probs=231.9
Q ss_pred eeeeeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCc
Q 004400 9 VFHFWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANI 87 (756)
Q Consensus 9 ~~~~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l 87 (756)
....+..+..++.|++++|++... + .+..+++|++|++++|.+++..+ +..++.|+ +++.+|++.. + +.|.++
T Consensus 36 ~~~~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l 109 (347)
T 4fmz_A 36 DVVTQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNL 109 (347)
T ss_dssp SEECHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTC
T ss_pred CcccchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCC
Confidence 334567888999999999999854 4 48899999999999999995444 88888884 8899998875 3 469999
Q ss_pred CCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEc
Q 004400 88 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFI 167 (756)
Q Consensus 88 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 167 (756)
++|++|+|++|.+++ ++. +..+++|+.|++++|.....++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 110 ~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l 184 (347)
T 4fmz_A 110 TNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184 (347)
T ss_dssp TTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred CcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence 999999999999994 444 9999999999999997664444 48999999999999999995444 899999999999
Q ss_pred cCCcCcCCCCccccCCCCCCeEEccCCCCCCCCcccccc-ccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCC
Q 004400 168 QPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGN-MKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQ 246 (756)
Q Consensus 168 ~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 246 (756)
++|++.+..+ +..+++|+.|++++|.+....+ +.. .+|+.|++++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 185 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred cCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence 9999985433 8899999999999999988765 444 469999999999996654 88999999999999999963
Q ss_pred CCccCcCCCCCCeEEecCccccccCCc-hhhcCCCeeEeecCCCCCCCCcccccccCccccccccc
Q 004400 247 IPSNFDDLYDVDYIYFAGNLLTGAIPP-WMLERGDKIDLSYNNFTDGSAESSCQKRSVTGIVSCLR 311 (756)
Q Consensus 247 ~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~l~~l~ls~N~l~~~~~~~~~~~~~~~~~~~~~~ 311 (756)
..+..+++|+.|++++|.+++. |. ..+++++.|++++|.+++..+........+..+....+
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred --hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 4689999999999999999864 33 22789999999999998766655555555554443333
No 302
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.2e-27 Score=252.47 Aligned_cols=223 Identities=22% Similarity=0.318 Sum_probs=208.2
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEe
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTV 95 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L 95 (756)
..++.|+|++|+++ .+|+.+.++++|++|+|++|.|+ .+|..+..++.|+ |++.+|++. .+|..|.++++|++|+|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 57889999999999 77888999999999999999999 8999999999994 899999998 88999999999999999
Q ss_pred ecCcccccCCcccCC---------CCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEE
Q 004400 96 QYNQFSGELPEELGS---------LLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLF 166 (756)
Q Consensus 96 ~~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 166 (756)
++|++.+.+|..++. +++|++|+|++|+++ .+|..+..+++|++|+|++|+++ .+|..|.++++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 999999899988765 999999999999999 89999999999999999999999 4777899999999999
Q ss_pred ccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCC
Q 004400 167 IQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLR 244 (756)
Q Consensus 167 l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 244 (756)
|++|++.+.+|..+..+++|+.|++++|++....+..+..+ +|+.|+|++|++.+.+|..++++++|+.+++..|.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999988888777766 5999999999999999999999999999999988766
No 303
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=8.1e-29 Score=261.86 Aligned_cols=248 Identities=18% Similarity=0.213 Sum_probs=166.7
Q ss_pred cCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccc-cccCCccCc-------CcCCCcEEEeecCcccccCCccc
Q 004400 37 LAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRL-KGPIPKYLA-------NISTLVNLTVQYNQFSGELPEEL 108 (756)
Q Consensus 37 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~-~~~~p~~l~-------~l~~L~~L~L~~N~l~~~~p~~~ 108 (756)
++..++|+.|++++|.+ .+|..+... .-.+++.+|++ ...+|..+. ++++|++|+|++|++++.+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI-IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH-HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH-HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34455666666666666 455544433 11356666666 344555554 67777777777777777777765
Q ss_pred --CCCCCCcEEeccCCeecccCCccccCC-----CCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCC--CCcc
Q 004400 109 --GSLLNLEKLHLSSNNFTGELPKTFAKL-----TNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGP--IPSG 179 (756)
Q Consensus 109 --~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~ 179 (756)
+.+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..|..|+++++|++|+|++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7777777777777777755 6666666 7777777777777776667777777777777777776654 2333
Q ss_pred c--cCCCCCCeEEccCCCCCCCC---cccccc-ccccEEEcccccccCCCC-ccccCCCCCcEEEccCCcCCCCCCccCc
Q 004400 180 I--FSLENLTDLRISDLNGPEAT---FPQLGN-MKMTKLILRNCNITGELP-RYLGKMTKLKVLDLSFNRLRGQIPSNFD 252 (756)
Q Consensus 180 ~--~~l~~L~~L~l~~n~~~~~~---~~~~~~-~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 252 (756)
+ ..+++|++|++++|.+.... ...+.. .+|+.|+|++|.+++.+| ..+..+++|+.|+|++|.|+ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 3 66777777777777776422 122222 357778888888877664 44566778888888888887 6666655
Q ss_pred CCCCCCeEEecCccccccCCch-hhcCCCeeEeecCCCCCC
Q 004400 253 DLYDVDYIYFAGNLLTGAIPPW-MLERGDKIDLSYNNFTDG 292 (756)
Q Consensus 253 ~l~~L~~L~ls~N~l~~~~p~~-~~~~l~~l~ls~N~l~~~ 292 (756)
++|+.|++++|++++. |.. .+++++.|++++|++++.
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTCC
T ss_pred --CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCCC
Confidence 7788888888888755 442 166777788888877653
No 304
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.1e-27 Score=250.41 Aligned_cols=246 Identities=16% Similarity=0.183 Sum_probs=216.1
Q ss_pred CEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEeecCccccc--CCcccCCCCCCcEEecc
Q 004400 44 QDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGE--LPEELGSLLNLEKLHLS 120 (756)
Q Consensus 44 ~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~ 120 (756)
+.++++++.++ .+|..+. +.+ ++++.+|++....+..|.++++|++|+|++|.++.. .+..+..+++|++|+|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57999999998 6666543 345 588999999866566789999999999999999833 36778889999999999
Q ss_pred CCeecccCCccccCCCCCCEEEeeCCcccccCC-hhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCC-
Q 004400 121 SNNFTGELPKTFAKLTNMKDFRISDNQFTGQIP-SFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPE- 198 (756)
Q Consensus 121 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~- 198 (756)
+|+++ .+|..+..+++|+.|++++|++++..+ ..+.++++|++|++++|++.+..+..+..+++|++|++++|.+..
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99999 677789999999999999999996655 689999999999999999999899999999999999999999886
Q ss_pred CCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh--
Q 004400 199 ATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM-- 275 (756)
Q Consensus 199 ~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~-- 275 (756)
..+..+..+ +|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+..+..+++|+.|++++|++++..|..+
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 445555555 69999999999999889999999999999999999998878789999999999999999998888776
Q ss_pred h-cCCCeeEeecCCCCCCC
Q 004400 276 L-ERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 276 ~-~~l~~l~ls~N~l~~~~ 293 (756)
+ +.++.|++++|+++|..
T Consensus 246 ~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCTTCCEEECTTCCEECSG
T ss_pred hhccCCEEEccCCCeeccc
Confidence 4 58999999999998754
No 305
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=9.8e-28 Score=250.18 Aligned_cols=236 Identities=17% Similarity=0.188 Sum_probs=203.0
Q ss_pred ceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCcc-ccccCCccCcCcCCCcEE
Q 004400 16 KTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANR-LKGPIPKYLANISTLVNL 93 (756)
Q Consensus 16 ~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~-~~~~~p~~l~~l~~L~~L 93 (756)
...++.|+|++|++++..+..|..+++|+.|+|++|.+++..|..|..++.|+ +++.+|+ +....|..|.++++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 35789999999999998888999999999999999999988899999999984 8999997 776778899999999999
Q ss_pred EeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCc
Q 004400 94 TVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLA 173 (756)
Q Consensus 94 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 173 (756)
+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|+++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999999888899999999999999999999777778999999999999999999777778999999999999999999
Q ss_pred CCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcC
Q 004400 174 GPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDD 253 (756)
Q Consensus 174 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 253 (756)
+..|..+..+++|+.|++++ |.+++..+..|..+++|+.|+|++|.+....+.. .-
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~-----------------------n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~ 246 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFA-----------------------NNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PL 246 (285)
T ss_dssp EECTTTTTTCTTCCEEECCS-----------------------SCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HH
T ss_pred ccCHhHccCcccccEeeCCC-----------------------CcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HH
Confidence 88899998888888776554 6666555667888899999999999888544321 11
Q ss_pred CCCCCeEEecCccccccCCchh
Q 004400 254 LYDVDYIYFAGNLLTGAIPPWM 275 (756)
Q Consensus 254 l~~L~~L~ls~N~l~~~~p~~~ 275 (756)
...++.+..+.|.+.|..|..+
T Consensus 247 ~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 247 WAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHHHHCCSEECCCBEEESGGG
T ss_pred HHHHHhcccccCccccCCchHh
Confidence 2335555677888888888765
No 306
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1e-28 Score=260.98 Aligned_cols=253 Identities=20% Similarity=0.236 Sum_probs=215.8
Q ss_pred cceeeeeccceeccccccccCcccccCCcccCCCCCCCEEEccCCccc-CccCcccc-------cCCcc-eeeccCcccc
Q 004400 7 FLVFHFWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLS-GTIPSQWA-------SLPLL-NISLIANRLK 77 (756)
Q Consensus 7 ~~~~~~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~-------~l~~L-~l~l~~n~~~ 77 (756)
....+.+++...++.++|++|++ .+|..+... |+.|+|++|.++ ..+|..+. .++.| .|++.+|++.
T Consensus 33 ~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 33 AADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108 (312)
T ss_dssp CSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB
T ss_pred cccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc
Confidence 34456778889999999999999 778777654 899999999994 45666665 67777 5899999999
Q ss_pred ccCCccC--cCcCCCcEEEeecCcccccCCcccCCC-----CCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccc
Q 004400 78 GPIPKYL--ANISTLVNLTVQYNQFSGELPEELGSL-----LNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTG 150 (756)
Q Consensus 78 ~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 150 (756)
+.+|..+ ..+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|..|+++++|++|+|++|++.+
T Consensus 109 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 109 GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 9999987 8999999999999999976 8888877 999999999999998888999999999999999999886
Q ss_pred c--CChhh--cCcCCCcEEEccCCcCcC--CCC-ccccCCCCCCeEEccCCCCCCCCc-ccccc-ccccEEEcccccccC
Q 004400 151 Q--IPSFI--QNWTKLEKLFIQPSGLAG--PIP-SGIFSLENLTDLRISDLNGPEATF-PQLGN-MKMTKLILRNCNITG 221 (756)
Q Consensus 151 ~--~p~~~--~~l~~L~~L~l~~N~l~~--~~p-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~-~~L~~L~L~~n~l~~ 221 (756)
. .+..+ .++++|++|+|++|++++ .++ ..+..+++|+.|++++|.+....+ ..+.. .+|++|+|++|.++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 5 34445 899999999999999983 223 334578999999999999998763 34443 47999999999999
Q ss_pred CCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccc
Q 004400 222 ELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTG 269 (756)
Q Consensus 222 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 269 (756)
.+|..+. ++|+.|+|++|+|++. |. +..+++|+.|++++|++++
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7777776 8999999999999976 66 9999999999999999985
No 307
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.9e-26 Score=257.94 Aligned_cols=263 Identities=27% Similarity=0.346 Sum_probs=151.8
Q ss_pred eeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCC
Q 004400 12 FWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTL 90 (756)
Q Consensus 12 ~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L 90 (756)
.+..+..++.|+|++|++++..+ +..+++|++|++++|.+++..+ +..++.|+ |++.+|++.+..+ +.++++|
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 136 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNL 136 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCC
Confidence 35667778888888888876544 7788888888888888875544 77777774 7777777775533 7778888
Q ss_pred cEEEeecCcccccCCc--------------------ccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccc
Q 004400 91 VNLTVQYNQFSGELPE--------------------ELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTG 150 (756)
Q Consensus 91 ~~L~L~~N~l~~~~p~--------------------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 150 (756)
++|+|++|.+++ ++. .+.++++|+.|+|++|++++. ..+..+++|+.|++++|++++
T Consensus 137 ~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 137 NRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp SEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccc
Confidence 888888887774 321 133444555555555555422 124455555555555555554
Q ss_pred cCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCC
Q 004400 151 QIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKM 230 (756)
Q Consensus 151 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 230 (756)
..| ++.+++|+.|++++|++++. ..+..+++|+.|++++|.+....+ .....+|+.|++++|.+++..+ +..+
T Consensus 214 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l 286 (466)
T 1o6v_A 214 ITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGL 286 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred ccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCC
Confidence 333 44455555555555555432 234455555555555555554433 1112235555555555554333 5555
Q ss_pred CCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchhhcCCCeeEeecCCCCCC
Q 004400 231 TKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWMLERGDKIDLSYNNFTDG 292 (756)
Q Consensus 231 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~l~ls~N~l~~~ 292 (756)
++|+.|+|++|++++..+ +..+++|+.|++++|.+++..|-..+++++.|++++|.+++.
T Consensus 287 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc
Confidence 555555555555554333 455555666666666555544433355555566665555543
No 308
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-28 Score=259.65 Aligned_cols=258 Identities=16% Similarity=0.118 Sum_probs=220.9
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEe
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTV 95 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L 95 (756)
..++.++++.+++...+...+..+++|+.|+|++|+|++..|..|..++.|+ |++.+|++.+..+ |..+++|++|+|
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 4567778999999887777778889999999999999988888999999994 8999999987665 999999999999
Q ss_pred ecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCC
Q 004400 96 QYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGP 175 (756)
Q Consensus 96 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 175 (756)
++|+|++.. .+++|++|+|++|++++..+. .+++|+.|+|++|++++..+..|..+++|++|+|++|++++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 999998533 348999999999999966554 367899999999999988888999999999999999999987
Q ss_pred CCcccc-CCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCC
Q 004400 176 IPSGIF-SLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDL 254 (756)
Q Consensus 176 ~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 254 (756)
.+..+. .+++|++|++++|.+...... ....+|+.|+|++|.+++. |..|..+++|+.|+|++|+++ .+|..+..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 777775 799999999999999877333 2345799999999999954 555999999999999999999 578889999
Q ss_pred CCCCeEEecCcccc-ccCCchh--hcCCCeeEeecC
Q 004400 255 YDVDYIYFAGNLLT-GAIPPWM--LERGDKIDLSYN 287 (756)
Q Consensus 255 ~~L~~L~ls~N~l~-~~~p~~~--~~~l~~l~ls~N 287 (756)
++|+.|++++|+++ +.+|.++ ++.++.+++++|
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 99999999999998 4455554 566777888744
No 309
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.4e-26 Score=257.03 Aligned_cols=265 Identities=24% Similarity=0.333 Sum_probs=211.0
Q ss_pred eccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCC----------
Q 004400 13 WKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIP---------- 81 (756)
Q Consensus 13 ~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p---------- 81 (756)
+.++..++.|+|++|.+++..+ +.++++|+.|+|++|.+++..+ +..++.| .|++.+|++.+...
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 161 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQL 161 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEE
T ss_pred hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEe
Confidence 6777788888888888886654 7788888888888888875433 6677766 36777776654211
Q ss_pred ---------ccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccC
Q 004400 82 ---------KYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQI 152 (756)
Q Consensus 82 ---------~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 152 (756)
..+.++++|+.|++++|.+++ + ..+..+++|++|++++|++++..| +..+++|+.|++++|++++ +
T Consensus 162 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~ 236 (466)
T 1o6v_A 162 SFGNQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I 236 (466)
T ss_dssp EEEESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C
T ss_pred ecCCcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c
Confidence 136778899999999999984 3 358899999999999999996655 7789999999999999985 3
Q ss_pred ChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCC
Q 004400 153 PSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTK 232 (756)
Q Consensus 153 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 232 (756)
..+..+++|+.|++++|++.+..+ +..+++|+.|++++|.+....+ .....+|+.|+|++|.+++..+ +..+++
T Consensus 237 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 310 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKN 310 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred -hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCC
Confidence 468899999999999999986554 8889999999999999887655 2233369999999999997654 788999
Q ss_pred CcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchhhcCCCeeEeecCCCCCCCC
Q 004400 233 LKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWMLERGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 233 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~l~ls~N~l~~~~~ 294 (756)
|+.|+|++|++++..| +..+++|+.|++++|++++...-.-+++++.|++++|++++..+
T Consensus 311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch
Confidence 9999999999997766 78899999999999999865222227889999999999987654
No 310
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3.3e-26 Score=254.25 Aligned_cols=257 Identities=17% Similarity=0.104 Sum_probs=212.7
Q ss_pred eeeeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcC
Q 004400 10 FHFWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANIS 88 (756)
Q Consensus 10 ~~~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~ 88 (756)
+..+..++.++.|+|++|++++. | .|..+++|+.|+|++|+|++. | +..++.| .|++.+|++.+. | +++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 34677889999999999999975 5 689999999999999999964 4 8888888 488999998875 3 89999
Q ss_pred CCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEcc
Q 004400 89 TLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQ 168 (756)
Q Consensus 89 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 168 (756)
+|++|+|++|++++ +| ++.+++|++|+|++|++++. + ++.+++|++|++++|+..+.+ .+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 99999999999996 44 89999999999999999964 3 888999999999999766566 48889999999999
Q ss_pred CCcCcCCCCccccCCCCCCeEEccCCCCCCCCcccccc-ccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCC
Q 004400 169 PSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGN-MKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQI 247 (756)
Q Consensus 169 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 247 (756)
+|++++ +| +..+++|+.|++++|.+.... +.. .+|+.|++++|++++ +| ++.+++|+.|++++|++++..
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CCccce-ec--cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 999986 45 888999999999999988873 333 469999999999997 55 888999999999999999876
Q ss_pred CccCcCCC-------CCCeEEecCccccccCCchhhcCCCeeEeecCCCCC
Q 004400 248 PSNFDDLY-------DVDYIYFAGNLLTGAIPPWMLERGDKIDLSYNNFTD 291 (756)
Q Consensus 248 p~~~~~l~-------~L~~L~ls~N~l~~~~p~~~~~~l~~l~ls~N~l~~ 291 (756)
+..+..+. +|+.|++++|.+.+.+|...++.++.|++++|...+
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCC
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccc
Confidence 66665554 566777777777777775556778888888887554
No 311
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.1e-25 Score=250.11 Aligned_cols=257 Identities=17% Similarity=0.067 Sum_probs=179.2
Q ss_pred eeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCC
Q 004400 12 FWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTL 90 (756)
Q Consensus 12 ~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L 90 (756)
.+..+..++.|+|++|++++. | +..+++|++|+|++|.|++. + +..++.| .|++.+|++.+ +| ++++++|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L 129 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLL 129 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence 577888999999999999975 4 88999999999999999864 4 7888888 48899998887 44 8889999
Q ss_pred cEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCC
Q 004400 91 VNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPS 170 (756)
Q Consensus 91 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 170 (756)
++|+|++|+|++. + ++.+++|++|++++|+..+.+ .+..+++|+.|++++|++++ +| ++.+++|+.|++++|
T Consensus 130 ~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 130 TYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTN 201 (457)
T ss_dssp CEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSS
T ss_pred CEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCC
Confidence 9999999999863 3 778888888888888655455 37778888888888888885 44 777788888888888
Q ss_pred cCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCC-------CCcEEEccCCcC
Q 004400 171 GLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMT-------KLKVLDLSFNRL 243 (756)
Q Consensus 171 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~-------~L~~L~Ls~N~l 243 (756)
++++. .+..+++|+.|++++|.+...+ .....+|+.|++++|++++..+..+.+++ +|+.|++++|.+
T Consensus 202 ~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 202 NITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQ 276 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred cCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCcc
Confidence 88754 3677778888888887777743 22223577777777777766544444433 334444455444
Q ss_pred CCCCCccCcCCCCCCeEEecCccccccCCchh----------hcCCCeeEeecCCCCCC
Q 004400 244 RGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM----------LERGDKIDLSYNNFTDG 292 (756)
Q Consensus 244 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~----------~~~l~~l~ls~N~l~~~ 292 (756)
.+.+| +..+++|+.|++++|...+.+|... .++++.|++++|.+++.
T Consensus 277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 277 LIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL 333 (457)
T ss_dssp CCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred CCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc
Confidence 44444 3445555555555555444443211 23455555555555553
No 312
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.93 E-value=9e-27 Score=263.41 Aligned_cols=184 Identities=17% Similarity=0.218 Sum_probs=145.7
Q ss_pred cccCcccCCCCccEEEeeccCCcEEEEEEccccCcc--------cHHHHHHHHHHHHhCCCCceeeEeeEEEeCCeEEEE
Q 004400 419 ATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQ--------GNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 419 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 490 (756)
...+.||+|+||.||+|.. .++.+++|+...+... ..+.+.+|++++++++||||+++..++..++..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4467999999999999954 4678888876443211 134589999999999999999777777788888999
Q ss_pred EEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccC
Q 004400 491 YEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEEN 570 (756)
Q Consensus 491 ~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~ 570 (756)
|||+++|+|.+++.. +..++.|+++||+|||+++ |+||||||+|||++. .+||+|||+++......
T Consensus 418 mE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH~~g---IiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~ 483 (540)
T 3en9_A 418 MSYINGKLAKDVIED---------NLDIAYKIGEIVGKLHKND---VIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDE 483 (540)
T ss_dssp EECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHHHTT---EECTTCCTTSEEESS--SEEECCCTTCEECCCHH
T ss_pred EECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHHHCc---CccCCCCHHHEEECC--eEEEEECccCEECCCcc
Confidence 999999999999854 5689999999999999997 999999999999999 99999999999765432
Q ss_pred cce------eeccccCccCCchHhhhc--CCCCcccchhhHHHHHHHHHhCCCCC
Q 004400 571 THI------STRVAGTIGYMAPEYAMR--GHLTEKADVYSFGIVALEIVSGRSNV 617 (756)
Q Consensus 571 ~~~------~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slGv~l~elltg~~p~ 617 (756)
... .....||+.|||||++.. ..|+..+|+|+..+-..+-+.++.+|
T Consensus 484 ~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY 538 (540)
T 3en9_A 484 DKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY 538 (540)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred ccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 211 235689999999999987 56888999999998888888777665
No 313
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.8e-25 Score=229.38 Aligned_cols=228 Identities=21% Similarity=0.235 Sum_probs=152.8
Q ss_pred cccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEeecCcc
Q 004400 22 RVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTVQYNQF 100 (756)
Q Consensus 22 l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l 100 (756)
++-.+.+++ .+|..+. ++|+.|+|++|++++..+..|..++.| .+++.+|++.+..+..|.++++|++|+|++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344455555 4565554 578888888888886555566666665 356666666655555666666666666666666
Q ss_pred cccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCccccc-CChhhcCcCCCcEEEccCCcCcCCCCcc
Q 004400 101 SGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQ-IPSFIQNWTKLEKLFIQPSGLAGPIPSG 179 (756)
Q Consensus 101 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 179 (756)
++..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|++++. +|..|.++++|++|+|++|++++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 655556666666666666666666655554566666666666666666642 4666666666666666666666554555
Q ss_pred ccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCe
Q 004400 180 IFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDY 259 (756)
Q Consensus 180 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 259 (756)
+..+++|+.|.+ .|++++|.+++..+..+. ..+|+.|+|++|.+++..+..|..+++|+.
T Consensus 169 ~~~l~~L~~l~l-------------------~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 169 LRVLHQMPLLNL-------------------SLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp GHHHHTCTTCCE-------------------EEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred hhhhhhccccce-------------------eeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccE
Confidence 555544443221 577888888866655554 448999999999999777777889999999
Q ss_pred EEecCccccccCC
Q 004400 260 IYFAGNLLTGAIP 272 (756)
Q Consensus 260 L~ls~N~l~~~~p 272 (756)
|++++|+++|.+|
T Consensus 229 L~l~~N~~~c~c~ 241 (276)
T 2z62_A 229 IWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEccCCcccccCC
Confidence 9999999998887
No 314
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.3e-25 Score=228.32 Aligned_cols=206 Identities=18% Similarity=0.166 Sum_probs=137.5
Q ss_pred CCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEc
Q 004400 88 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFI 167 (756)
Q Consensus 88 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 167 (756)
++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|.++++|+.|+|++|++++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666555555666666666666666666555555666666666666666666555555666666666666
Q ss_pred cCCcCcCCCCccccCCCCCCeEEccCCCCCCCC-ccccccc-cccEEEcccccccCCCCccccCCCCCc----EEEccCC
Q 004400 168 QPSGLAGPIPSGIFSLENLTDLRISDLNGPEAT-FPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLK----VLDLSFN 241 (756)
Q Consensus 168 ~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~----~L~Ls~N 241 (756)
++|++.+..+..+..+++|++|++++|.+.... +..+..+ +|+.|+|++|++++..+..|..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 666666544445666666666666666665533 3344433 466677777778776667777666666 8999999
Q ss_pred cCCCCCCccCcCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCC
Q 004400 242 RLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 242 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~ 294 (756)
.+++..+..+.. .+|+.|++++|.+++..+..+ +++++.|++++|++.|..+
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 999766665554 589999999999996555443 7889999999999998653
No 315
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-26 Score=258.78 Aligned_cols=236 Identities=18% Similarity=0.096 Sum_probs=206.8
Q ss_pred cceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEE
Q 004400 15 QKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNL 93 (756)
Q Consensus 15 ~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L 93 (756)
.+..++.|+|++|++++..|..|..+++|+.|+|++|.|++..| +..++.| .|++.+|++.+..+ .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34589999999999999988999999999999999999997666 8899988 48999999886443 3899999
Q ss_pred EeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhc-CcCCCcEEEccCCcC
Q 004400 94 TVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQ-NWTKLEKLFIQPSGL 172 (756)
Q Consensus 94 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~l~~N~l 172 (756)
+|++|.|++..+. .+++|+.|+|++|++++..|..|+.+++|+.|+|++|+|++.+|..|. .+++|+.|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999976554 468999999999999998899999999999999999999998888886 799999999999999
Q ss_pred cCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCC-CCCCccC
Q 004400 173 AGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLR-GQIPSNF 251 (756)
Q Consensus 173 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~ 251 (756)
++.. .+..+++|+.|++++|.+...++......+|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus 182 ~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 182 YDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp CEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 9763 3446999999999999999877764444579999999999995 6778999999999999999998 6677778
Q ss_pred cCCCCCCeEEec
Q 004400 252 DDLYDVDYIYFA 263 (756)
Q Consensus 252 ~~l~~L~~L~ls 263 (756)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 888888777775
No 316
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=7.9e-27 Score=247.17 Aligned_cols=247 Identities=18% Similarity=0.101 Sum_probs=213.3
Q ss_pred eccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCc
Q 004400 13 WKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLV 91 (756)
Q Consensus 13 ~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~ 91 (756)
+..+..++.|+|++|++++..|..|..+++|+.|+|++|.+++..+ +..++.| .|++.+|++.+.. ..++|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence 4556789999999999999888999999999999999999996665 8889888 4899999988543 348999
Q ss_pred EEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhc-CcCCCcEEEccCC
Q 004400 92 NLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQ-NWTKLEKLFIQPS 170 (756)
Q Consensus 92 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~l~~N 170 (756)
+|++++|+|++..+. .+++|++|+|++|++++..+..+..+++|+.|+|++|++++..+..+. .+++|++|+|++|
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 999999999966544 468899999999999988888999999999999999999988777774 7999999999999
Q ss_pred cCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCC-CCCCc
Q 004400 171 GLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLR-GQIPS 249 (756)
Q Consensus 171 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~ 249 (756)
++++. + ....+++|+.|++++|.+...++......+|+.|+|++|.++ .+|..+..+++|+.|+|++|.+. +.+|.
T Consensus 180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 180 FIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred cCccc-c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 99865 3 334599999999999999987766444457999999999999 57888999999999999999999 77888
Q ss_pred cCcCCCCCCeEEecCc-cccccCC
Q 004400 250 NFDDLYDVDYIYFAGN-LLTGAIP 272 (756)
Q Consensus 250 ~~~~l~~L~~L~ls~N-~l~~~~p 272 (756)
.+..+++|+.|++++| .++|..|
T Consensus 257 ~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred HHhccccceEEECCCchhccCCch
Confidence 8999999999999955 4665433
No 317
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=6.8e-24 Score=219.16 Aligned_cols=205 Identities=22% Similarity=0.254 Sum_probs=122.0
Q ss_pred CCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEecc
Q 004400 42 FLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLS 120 (756)
Q Consensus 42 ~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 120 (756)
.++.+++++++++ .+|..+. +.+ +|++.+|++.+..+..|.++++|++|+|++|+|+...+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4567888888887 4554332 222 34445555554444455555555555555555553333334455555555555
Q ss_pred CCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCC
Q 004400 121 SNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEAT 200 (756)
Q Consensus 121 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 200 (756)
+|++++..+..|..+++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..+..+++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--------------- 158 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS--------------- 158 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc---------------
Confidence 55555443444445555555555555555444444455555555555555554333333444444
Q ss_pred ccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCC
Q 004400 201 FPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIP 272 (756)
Q Consensus 201 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 272 (756)
|+.|+|++|.+++..+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 159 --------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 159 --------LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp --------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred --------cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 5555666677776667778888999999999999997777778888999999999999887665
No 318
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.5e-24 Score=238.99 Aligned_cols=248 Identities=21% Similarity=0.254 Sum_probs=141.8
Q ss_pred eccceeccccccccCcccccCCcccCCCCCC-------------CEEEccCCcccCccCcccccCCcc-eeeccCccccc
Q 004400 13 WKQKTVNQKRVLKEQNLTGVLPPKLAELTFL-------------QDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKG 78 (756)
Q Consensus 13 ~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L-------------~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~ 78 (756)
+..++.++.|+|++|+++|.+|..++++++| +.|++++|++++ +|... +.| .+++.+|++.+
T Consensus 30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~~---~~L~~L~l~~n~l~~ 105 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPELP---PHLESLVASCNSLTE 105 (454)
T ss_dssp ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSCC---TTCSEEECCSSCCSS
T ss_pred HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCCc---CCCCEEEccCCcCCc
Confidence 4555555555555555555555555554432 555555555553 22211 233 34555555554
Q ss_pred cCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcC
Q 004400 79 PIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQN 158 (756)
Q Consensus 79 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 158 (756)
+|.. +++|+.|++++|++++ +|.. .++|++|+|++|++++ +| .|+++++|++|++++|++++ +|..+
T Consensus 106 -lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~-- 172 (454)
T 1jl5_A 106 -LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP-- 172 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--
T ss_pred -cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--
Confidence 4432 2456666666666653 2221 1466777777777764 55 46667777777777777663 44432
Q ss_pred cCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEc
Q 004400 159 WTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDL 238 (756)
Q Consensus 159 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 238 (756)
.+|++|++++|++++ +| .+.++++|+.|++++|.+...+... .+|+.|++++|.++ .+|. ++.+++|++|++
T Consensus 173 -~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l 244 (454)
T 1jl5_A 173 -PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYA 244 (454)
T ss_dssp -TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred -ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEEC
Confidence 467777777777764 44 4667777777777777666532211 25677777777776 4553 667777777777
Q ss_pred cCCcCCCCCCccCcCCCCCCeEEecCccccccCCchhhcCCCeeEeecCCCCC
Q 004400 239 SFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWMLERGDKIDLSYNNFTD 291 (756)
Q Consensus 239 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~l~ls~N~l~~ 291 (756)
++|++++ +|.. +++|+.|++++|.+++ +|.. .+.++.|++++|.+++
T Consensus 245 ~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~-~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 245 DNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL-PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSE
T ss_pred CCCcCCc-cccc---ccccCEEECCCCcccc-cCcc-cCcCCEEECcCCccCc
Confidence 7777764 4432 3567777777777764 4433 3566777777777665
No 319
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.1e-23 Score=233.74 Aligned_cols=222 Identities=21% Similarity=0.302 Sum_probs=124.9
Q ss_pred CCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEec
Q 004400 41 TFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHL 119 (756)
Q Consensus 41 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 119 (756)
++|++|+|++|++++ +| .|..++.|+ +++.+|++.+ +|..+ .+|++|+|++|++++ +| .|+++++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 456666666666653 44 355555553 5555555553 44332 356666666666653 34 3555666666666
Q ss_pred cCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCC
Q 004400 120 SSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEA 199 (756)
Q Consensus 120 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 199 (756)
++|++++ +|... ++|+.|++++|+++ .+|. |+++++|++|++++|++++ +|.. +++|+.|++++|.+...
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc
Confidence 6665553 33221 35555555555555 4442 5555555555555555553 3321 24445555554444432
Q ss_pred Cccc---------------c--ccccccEEEcccccccCCCCccccCC-CCCcEEEccCCcCCCCCCccCcCCCCCCeEE
Q 004400 200 TFPQ---------------L--GNMKMTKLILRNCNITGELPRYLGKM-TKLKVLDLSFNRLRGQIPSNFDDLYDVDYIY 261 (756)
Q Consensus 200 ~~~~---------------~--~~~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 261 (756)
+... + ...+|++|++++|.+++ +..+ ++|+.|++++|++++ +|.. +++|+.|+
T Consensus 273 ~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLI 343 (454)
T ss_dssp CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred CcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEE
Confidence 2110 0 00234455555555443 1123 578888888888885 5543 57888888
Q ss_pred ecCccccccCCchhhcCCCeeEeecCCCCC
Q 004400 262 FAGNLLTGAIPPWMLERGDKIDLSYNNFTD 291 (756)
Q Consensus 262 ls~N~l~~~~p~~~~~~l~~l~ls~N~l~~ 291 (756)
+++|.++ .+|. .+++++.|++++|++++
T Consensus 344 L~~N~l~-~lp~-~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 344 ASFNHLA-EVPE-LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCSSCCS-CCCC-CCTTCCEEECCSSCCSS
T ss_pred CCCCccc-cccc-hhhhccEEECCCCCCCc
Confidence 8888888 4666 67788888888888887
No 320
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=8.7e-24 Score=220.41 Aligned_cols=205 Identities=20% Similarity=0.218 Sum_probs=126.4
Q ss_pred cCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCc
Q 004400 37 LAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLE 115 (756)
Q Consensus 37 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 115 (756)
+.++++|+.|++++|+|+ .+|..+. +.+ .|++.+|++.+..|..|.++++|+.|+|++|.|++..+ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 667888899999998888 4444332 223 34555555555555555555555555555555553222 14555555
Q ss_pred EEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCC
Q 004400 116 KLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLN 195 (756)
Q Consensus 116 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 195 (756)
+|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..|.++++|++|+|++|++++..+..|..+++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---------- 149 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK---------- 149 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT----------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC----------
Confidence 5555555555 44545555555555555555555444455555555555555555555433333444444
Q ss_pred CCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccC
Q 004400 196 GPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAI 271 (756)
Q Consensus 196 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 271 (756)
|+.|+|++|+++...+..|.++++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++.|.+
T Consensus 150 -------------L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 150 -------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp -------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred -------------CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 445556667777666666788888888888888888 67777777888888888888887654
No 321
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.9e-24 Score=223.56 Aligned_cols=219 Identities=23% Similarity=0.254 Sum_probs=121.6
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcCCCcEEEee
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLVNLTVQ 96 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~~L~L~ 96 (756)
..+..+.+..+.+.+... +..+++|+.|++++|.++. ++ .+..+++|++|+|+
T Consensus 19 ~~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~------------------------~l~~l~~L~~L~l~ 71 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ------------------------GIQYLPNVRYLALG 71 (272)
T ss_dssp HHHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCCC-CT------------------------TGGGCTTCCEEECT
T ss_pred HHHHHHHhcCcccccccc--cccccceeeeeeCCCCccc-cc------------------------ccccCCCCcEEECC
Confidence 445566666776665533 4566777777777777762 11 24455666666666
Q ss_pred cCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCC
Q 004400 97 YNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPI 176 (756)
Q Consensus 97 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 176 (756)
+|.+++ + ..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..
T Consensus 72 ~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 149 (272)
T 3rfs_A 72 GNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149 (272)
T ss_dssp TSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC
Confidence 666653 2 35666666666666666666555555566666666666666666555555666666666666666666544
Q ss_pred CccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCC
Q 004400 177 PSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYD 256 (756)
Q Consensus 177 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 256 (756)
+..+..+++|+.|++++| ++++..+..|+.+++|+.|+|++|.+++..+..+..+++
T Consensus 150 ~~~~~~l~~L~~L~l~~n-----------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 150 KGVFDKLTNLTELDLSYN-----------------------QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TTTTTTCTTCCEEECCSS-----------------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HHHhccCccCCEEECCCC-----------------------CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 444555555555554443 333333334444455555555555555444444444555
Q ss_pred CCeEEecCccccccCCchhhcCCCeeEeecCCCCCC
Q 004400 257 VDYIYFAGNLLTGAIPPWMLERGDKIDLSYNNFTDG 292 (756)
Q Consensus 257 L~~L~ls~N~l~~~~p~~~~~~l~~l~ls~N~l~~~ 292 (756)
|+.|++++|++.|.+| .++.+++..|.++|.
T Consensus 207 L~~L~l~~N~~~~~~~-----~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 207 LQYIWLHDNPWDCTCP-----GIRYLSEWINKHSGV 237 (272)
T ss_dssp CCEEECCSSCBCCCTT-----TTHHHHHHHHHTGGG
T ss_pred CCEEEccCCCccccCc-----HHHHHHHHHHhCCCc
Confidence 5555555555544433 233444444444443
No 322
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.2e-23 Score=217.36 Aligned_cols=203 Identities=19% Similarity=0.187 Sum_probs=153.8
Q ss_pred CcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCc
Q 004400 84 LANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLE 163 (756)
Q Consensus 84 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 163 (756)
++++++|+++++++|.++ .+|..+. ++|+.|+|++|++++..+..|.++++|+.|+|++|+|++..+. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 556667777777777776 5555443 4677777777777766666677777777777777777643322 5667777
Q ss_pred EEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCc
Q 004400 164 KLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNR 242 (756)
Q Consensus 164 ~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 242 (756)
+|+|++|+++ .+|..+..+++|+.|++++|.+....+..+..+ +|+.|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777776 566666777777777777777776666656554 57788888899998888889999999999999999
Q ss_pred CCCCCCccCcCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCC
Q 004400 243 LRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 243 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~ 293 (756)
|++..+..|..+++|+.|+|++|+++ .+|..+ ...++.+++++|++.|..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 99777778899999999999999999 677766 567999999999998753
No 323
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=4.5e-23 Score=212.95 Aligned_cols=199 Identities=22% Similarity=0.260 Sum_probs=132.9
Q ss_pred eeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcc
Q 004400 69 ISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQF 148 (756)
Q Consensus 69 l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 148 (756)
+++.+++++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|+++...+..|.++++|++|+|++|++
T Consensus 21 l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 21 VDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp EECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 455555554 3444333 4555566666655544444555555566666655555543344445555555555555555
Q ss_pred cccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCcccc
Q 004400 149 TGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLG 228 (756)
Q Consensus 149 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 228 (756)
++..+..|.++++|++|+|++|++++..+..|..+++ |+.|+|++|.+++..+..|.
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-----------------------L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-----------------------LTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT-----------------------CCEEECCSSCCCCCCTTTTT
T ss_pred CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC-----------------------CCEEECCCCcCCccCHhHcc
Confidence 5444445555555555555555555444444444444 55556666777767677789
Q ss_pred CCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCC
Q 004400 229 KMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 229 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~ 293 (756)
.+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+..+ ++.++.|++++|++.|..
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 99999999999999998888889999999999999999996555444 678999999999998764
No 324
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1e-23 Score=218.01 Aligned_cols=197 Identities=20% Similarity=0.231 Sum_probs=157.6
Q ss_pred eeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcc
Q 004400 69 ISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQF 148 (756)
Q Consensus 69 l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 148 (756)
+.+..+.+... ..+..+++|+.|++++|.++ .+ ..+..+++|++|+|++|++++ + ..+..+++|++|+|++|++
T Consensus 24 l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 24 ANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCC
T ss_pred HHhcCcccccc--cccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCcc
Confidence 44555555433 23567788888888888887 34 347888888888888888885 3 3678888888888888888
Q ss_pred cccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCcccc
Q 004400 149 TGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLG 228 (756)
Q Consensus 149 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 228 (756)
++..+..|.++++|++|+|++|++++..+..+..+++|++|+ |++|.+++..+..|.
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-----------------------L~~n~l~~~~~~~~~ 154 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN-----------------------LAHNQLQSLPKGVFD 154 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE-----------------------CCSSCCCCCCTTTTT
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE-----------------------CCCCccCccCHHHhc
Confidence 877777788888888888888888866666677777766655 555677767777789
Q ss_pred CCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCC
Q 004400 229 KMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 229 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~ 294 (756)
.+++|+.|+|++|++++..+..|..+++|+.|++++|.+++..|..+ +++++.|++++|++.|..+
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 99999999999999998888889999999999999999998777655 7899999999999987654
No 325
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=8.6e-23 Score=233.64 Aligned_cols=233 Identities=27% Similarity=0.351 Sum_probs=135.5
Q ss_pred eccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEee
Q 004400 18 VNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTVQ 96 (756)
Q Consensus 18 ~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L~ 96 (756)
.++.|++++|+++ .+|..+. ++|+.|+|++|+|+ .+|. .++.| .|++.+|+++ .+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4677888888888 6676665 78888888888888 4555 34556 4777788776 4555 56788888888
Q ss_pred cCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCC
Q 004400 97 YNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPI 176 (756)
Q Consensus 97 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 176 (756)
+|+|++ +|. .+++|+.|+|++|+|+ .+|.. +++|+.|+|++|++++ +|.. +++|+.|++++|++++ +
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-C
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCc---cCCCCEEECCCCCCCC-C
Confidence 888884 444 5677888888888887 35543 4778888888887774 4432 3455566666666653 3
Q ss_pred CccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCC
Q 004400 177 PSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYD 256 (756)
Q Consensus 177 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 256 (756)
| ..+++|+.|++++|.+..++.. ..+|+.|++++|.++ .+|.. +++|+.|+|++|.|++ +| ..+++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~ 242 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSE 242 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred c---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCc
Confidence 3 2345555566665555543221 123444444444444 22221 2444444444444442 23 22344
Q ss_pred CCeEEecCccccccCCchhhcCCCeeEeecCCCC
Q 004400 257 VDYIYFAGNLLTGAIPPWMLERGDKIDLSYNNFT 290 (756)
Q Consensus 257 L~~L~ls~N~l~~~~p~~~~~~l~~l~ls~N~l~ 290 (756)
|+.|++++|.|+ .+|. .+++++.|++++|.++
T Consensus 243 L~~L~Ls~N~L~-~lp~-~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 243 LKELMVSGNRLT-SLPM-LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CCEEECCSSCCS-CCCC-CCTTCCEEECCSSCCC
T ss_pred CcEEECCCCCCC-cCCc-ccccCcEEeCCCCCCC
Confidence 444444444444 2333 3344444444444444
No 326
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=4.1e-26 Score=254.90 Aligned_cols=207 Identities=19% Similarity=0.236 Sum_probs=92.5
Q ss_pred CcCcCCCcEEEeecCcccccCCcccC-----CCCCCcEEeccCCeeccc----CCccccCCCCCCEEEeeCCcccccC--
Q 004400 84 LANISTLVNLTVQYNQFSGELPEELG-----SLLNLEKLHLSSNNFTGE----LPKTFAKLTNMKDFRISDNQFTGQI-- 152 (756)
Q Consensus 84 l~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~-- 152 (756)
+..+++|++|+|++|.++...+..+. .+++|++|+|++|++++. ++..+..+++|++|+|++|+++...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 33344444444444444432222222 133444444444444431 2334444455555555555444321
Q ss_pred ---ChhhcCcCCCcEEEccCCcCcCC----CCccccCCCCCCeEEccCCCCCCCCcccccc------ccccEEEcccccc
Q 004400 153 ---PSFIQNWTKLEKLFIQPSGLAGP----IPSGIFSLENLTDLRISDLNGPEATFPQLGN------MKMTKLILRNCNI 219 (756)
Q Consensus 153 ---p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------~~L~~L~L~~n~l 219 (756)
+..+..+++|++|+|++|+++.. ++..+..+++|++|++++|.+.......+.. .+|+.|+|++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 11122344555555555555432 3444444555555555555444332222211 1455555555555
Q ss_pred cCC----CCccccCCCCCcEEEccCCcCCCCCCccCcC-----CCCCCeEEecCccccc----cCCchh--hcCCCeeEe
Q 004400 220 TGE----LPRYLGKMTKLKVLDLSFNRLRGQIPSNFDD-----LYDVDYIYFAGNLLTG----AIPPWM--LERGDKIDL 284 (756)
Q Consensus 220 ~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~ls~N~l~~----~~p~~~--~~~l~~l~l 284 (756)
++. ++..+..+++|++|+|++|.+++..+..+.. .++|+.|++++|.+++ .+|..+ .+.++.|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 543 2334444555555555555555433332221 3455555555555553 334333 445555555
Q ss_pred ecCCCC
Q 004400 285 SYNNFT 290 (756)
Q Consensus 285 s~N~l~ 290 (756)
++|+++
T Consensus 406 ~~N~i~ 411 (461)
T 1z7x_W 406 SNNCLG 411 (461)
T ss_dssp CSSSCC
T ss_pred CCCCCC
Confidence 555554
No 327
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=4.4e-23 Score=210.57 Aligned_cols=204 Identities=20% Similarity=0.272 Sum_probs=125.1
Q ss_pred eeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcc
Q 004400 69 ISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQF 148 (756)
Q Consensus 69 l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 148 (756)
+++.++++. .+|..+. ++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|
T Consensus 19 l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 19 VDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp EECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 445555544 4444443 4566666666666655555566666666666666666655555555566666666666666
Q ss_pred cccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCcccc
Q 004400 149 TGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLG 228 (756)
Q Consensus 149 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 228 (756)
++..+..|.++++|++|+|++|++++..+..+..+++ |+.|+|++|++++..+..|.
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------------------L~~L~Ls~N~l~~~~~~~~~ 152 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-----------------------LKELRLNTNQLQSIPAGAFD 152 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------------------CCEEECCSSCCCCCCTTTTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc-----------------------ccEEECcCCcCCccCHHHcC
Confidence 6555555555555666666555555444434444444 55556667788877777899
Q ss_pred CCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCC------chhh-cCCCeeEeecCCCCCCCCcccc
Q 004400 229 KMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIP------PWML-ERGDKIDLSYNNFTDGSAESSC 298 (756)
Q Consensus 229 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p------~~~~-~~l~~l~ls~N~l~~~~~~~~~ 298 (756)
.+++|+.|+|++|++++..+..|..+++|+.|++++|+++|... .|+. ......+..++.+.+.+....|
T Consensus 153 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C 229 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTC 229 (251)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBB
T ss_pred cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCcc
Confidence 99999999999999998888889999999999999999998733 2331 1223344556665554444444
No 328
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=8.3e-23 Score=206.92 Aligned_cols=206 Identities=15% Similarity=0.170 Sum_probs=114.9
Q ss_pred cccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcCCCcEEEeecCc-ccccCCc
Q 004400 28 NLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLVNLTVQYNQ-FSGELPE 106 (756)
Q Consensus 28 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~ 106 (756)
+++ .+|. +. ++|+.|+|++|+|++..+..| .++++|++|+|++|+ +++..+.
T Consensus 22 ~l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~-----------------------~~l~~L~~L~l~~n~~l~~i~~~ 74 (239)
T 2xwt_C 22 DIQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAF-----------------------SNLPNISRIYVSIDVTLQQLESH 74 (239)
T ss_dssp SCS-SCCC-CC--TTCCEEEEESCCCSEECTTTT-----------------------TTCTTCCEEEEECCSSCCEECTT
T ss_pred Ccc-ccCC-CC--CcccEEEEeCCcceEECHHHc-----------------------cCCCCCcEEeCCCCCCcceeCHh
Confidence 344 4555 43 467777777777774443344 444455555555553 4433334
Q ss_pred ccCCCCCCcEEeccC-CeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCc---EEEccCC-cCcCCCCcccc
Q 004400 107 ELGSLLNLEKLHLSS-NNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLE---KLFIQPS-GLAGPIPSGIF 181 (756)
Q Consensus 107 ~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~---~L~l~~N-~l~~~~p~~~~ 181 (756)
.|.++++|++|+|++ |++++..+..|.++++|+.|+|++|++++ +|. |..+++|+ +|++++| ++++..+..|.
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~ 152 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152 (239)
T ss_dssp TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCccccc
Confidence 455555555555554 55554444445555555555555555553 333 44444444 5555555 55444444455
Q ss_pred CCCCCC-eEEccCCCCCCCCccccccccccEEEccccc-ccCCCCccccCC-CCCcEEEccCCcCCCCCCccCcCCCCCC
Q 004400 182 SLENLT-DLRISDLNGPEATFPQLGNMKMTKLILRNCN-ITGELPRYLGKM-TKLKVLDLSFNRLRGQIPSNFDDLYDVD 258 (756)
Q Consensus 182 ~l~~L~-~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 258 (756)
++++|+ .|++++|.+...+...+...+|+.|+|++|. +++..+..|.++ ++|+.|+|++|++++ +|.. .+++|+
T Consensus 153 ~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~ 229 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLK 229 (239)
T ss_dssp TTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCS
T ss_pred chhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCc
Confidence 555555 5555555554444333444456667777774 776666677777 888888888888874 4432 566777
Q ss_pred eEEecCc
Q 004400 259 YIYFAGN 265 (756)
Q Consensus 259 ~L~ls~N 265 (756)
.|+++++
T Consensus 230 ~L~l~~~ 236 (239)
T 2xwt_C 230 ELIARNT 236 (239)
T ss_dssp EEECTTC
T ss_pred eeeccCc
Confidence 7777765
No 329
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.89 E-value=1.3e-23 Score=217.82 Aligned_cols=151 Identities=19% Similarity=0.100 Sum_probs=122.2
Q ss_pred HHHhhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCc------------------ccHHHHHHHHHHHHhCCCC
Q 004400 411 IKAATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSK------------------QGNREFINEIGMISALQHP 472 (756)
Q Consensus 411 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l~h~ 472 (756)
+......|...+.||+|+||.||+|...+|+.||+|.++.... .....+.+|++++++++
T Consensus 85 ~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-- 162 (282)
T 1zar_A 85 LVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-- 162 (282)
T ss_dssp HHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--
Confidence 3344566778899999999999999997799999999864321 12456889999999999
Q ss_pred ceeeEeeEEEeCCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCC
Q 004400 473 NLVKLYGCCIEGNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKD 552 (756)
Q Consensus 473 niv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~ 552 (756)
| +++.+++.. +..++||||+++|+|.+ +. ......++.|++.||+|||+.| |+||||||+|||++ +
T Consensus 163 ~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~-------~~~~~~i~~qi~~~l~~lH~~g---iiHrDlkp~NILl~-~ 228 (282)
T 1zar_A 163 G-LAVPKVYAW-EGNAVLMELIDAKELYR-VR-------VENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVS-E 228 (282)
T ss_dssp T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CC-------CSCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEE-T
T ss_pred C-CCcCeEEec-cceEEEEEecCCCcHHH-cc-------hhhHHHHHHHHHHHHHHHHHCC---CEeCCCCHHHEEEE-C
Confidence 5 677776544 55699999999999977 31 1235579999999999999997 99999999999999 9
Q ss_pred CCEEEccCCccccCcccCcceeeccccCccCCchHhhhc
Q 004400 553 LNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMR 591 (756)
Q Consensus 553 ~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 591 (756)
+.+||+|||+|+. +..|+|||++.+
T Consensus 229 ~~vkl~DFG~a~~--------------~~~~~a~e~l~r 253 (282)
T 1zar_A 229 EGIWIIDFPQSVE--------------VGEEGWREILER 253 (282)
T ss_dssp TEEEECCCTTCEE--------------TTSTTHHHHHHH
T ss_pred CcEEEEECCCCeE--------------CCCCCHHHHHHH
Confidence 9999999999962 345799998854
No 330
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.4e-22 Score=205.27 Aligned_cols=205 Identities=19% Similarity=0.172 Sum_probs=177.2
Q ss_pred cccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCe-ecccCCccccCCCCCCEEEeeC-CcccccCCh
Q 004400 77 KGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNN-FTGELPKTFAKLTNMKDFRISD-NQFTGQIPS 154 (756)
Q Consensus 77 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~ 154 (756)
...+|. +. .+|++|+|++|+|++..+..|.++++|++|+|++|+ ++...+..|.++++|++|+|++ |++++..+.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 345666 44 489999999999998877899999999999999997 9877777899999999999999 999987788
Q ss_pred hhcCcCCCcEEEccCCcCcCCCCccccCCCCCC---eEEccCC-CCCCCCccccccc-ccc-EEEcccccccCCCCcccc
Q 004400 155 FIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLT---DLRISDL-NGPEATFPQLGNM-KMT-KLILRNCNITGELPRYLG 228 (756)
Q Consensus 155 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~-~L~-~L~L~~n~l~~~~p~~~~ 228 (756)
.|.++++|++|++++|++++ +|. +..+++|+ .|++++| .+.......+... +|+ .|++++|.++...+..|.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 99999999999999999996 676 88899998 9999999 8888887777765 599 999999999944444455
Q ss_pred CCCCCcEEEccCCc-CCCCCCccCcCC-CCCCeEEecCccccccCCchhhcCCCeeEeecCC
Q 004400 229 KMTKLKVLDLSFNR-LRGQIPSNFDDL-YDVDYIYFAGNLLTGAIPPWMLERGDKIDLSYNN 288 (756)
Q Consensus 229 ~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~p~~~~~~l~~l~ls~N~ 288 (756)
. ++|+.|+|++|+ +++..+..|..+ ++|+.|++++|+++ .+|...+++++.|+++++.
T Consensus 178 ~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSEEECTTC-
T ss_pred C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChhHhccCceeeccCcc
Confidence 5 899999999995 997778889999 99999999999998 5666678889999887653
No 331
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.1e-24 Score=232.94 Aligned_cols=249 Identities=16% Similarity=0.190 Sum_probs=153.3
Q ss_pred cccccCcccccCCcccCCCCCCCEEEccCCcccCccC----cccccCC-cc-eeeccCccccccCCccCcCc-----CCC
Q 004400 22 RVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIP----SQWASLP-LL-NISLIANRLKGPIPKYLANI-----STL 90 (756)
Q Consensus 22 l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L-~l~l~~n~~~~~~p~~l~~l-----~~L 90 (756)
..|++|+++|.+|+.+...++|+.|+|++|.|++..+ ..+..++ .| +|++.+|++.+..+..|..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4678899999988888887889999999999986665 5666666 56 47777777777766666665 777
Q ss_pred cEEEeecCcccccCCcccC----CC-CCCcEEeccCCeecccCCccccC-----CCCCCEEEeeCCcccccC----Chhh
Q 004400 91 VNLTVQYNQFSGELPEELG----SL-LNLEKLHLSSNNFTGELPKTFAK-----LTNMKDFRISDNQFTGQI----PSFI 156 (756)
Q Consensus 91 ~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~----p~~~ 156 (756)
++|+|++|.|++..+..++ .+ ++|++|+|++|++++..+..+.. .++|++|+|++|+++... +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 7777777777766655433 33 67777777777777555544332 257777777777777433 3334
Q ss_pred cCcC-CCcEEEccCCcCcCCCCcccc----CC-CCCCeEEccCCCCCCCCcccc----cc--ccccEEEcccccccCCCC
Q 004400 157 QNWT-KLEKLFIQPSGLAGPIPSGIF----SL-ENLTDLRISDLNGPEATFPQL----GN--MKMTKLILRNCNITGELP 224 (756)
Q Consensus 157 ~~l~-~L~~L~l~~N~l~~~~p~~~~----~l-~~L~~L~l~~n~~~~~~~~~~----~~--~~L~~L~L~~n~l~~~~p 224 (756)
..++ +|++|+|++|++++..+..+. .+ ++|+.|++++|.+.......+ .. .+|+.|+|++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 777777777777755554333 23 467777766666655332211 11 145555555555554333
Q ss_pred ----ccccCCCCCcEEEccCCcCCCCC-------CccCcCCCCCCeEEecCcccccc
Q 004400 225 ----RYLGKMTKLKVLDLSFNRLRGQI-------PSNFDDLYDVDYIYFAGNLLTGA 270 (756)
Q Consensus 225 ----~~~~~l~~L~~L~Ls~N~l~~~~-------p~~~~~l~~L~~L~ls~N~l~~~ 270 (756)
..+..+++|+.|+|++|.+.+.. +..+..+++|+.|++++|++.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 22344455555555555533221 22344455555555555555433
No 332
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=8.3e-23 Score=215.48 Aligned_cols=204 Identities=18% Similarity=0.175 Sum_probs=161.3
Q ss_pred CcCCCcEEEeecCcccccCCccc--CCCCCCcEEeccCCeecccCC----ccccCCCCCCEEEeeCCcccccCChhhcCc
Q 004400 86 NISTLVNLTVQYNQFSGELPEEL--GSLLNLEKLHLSSNNFTGELP----KTFAKLTNMKDFRISDNQFTGQIPSFIQNW 159 (756)
Q Consensus 86 ~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 159 (756)
.+++|++|+|++|.+++..|..+ ..+++|++|+|++|++++..+ ..+..+++|++|+|++|++++..+..|+++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 35679999999999988888887 888899999999999887555 344568899999999999988888888899
Q ss_pred CCCcEEEccCCcCcCC--C--CccccCCCCCCeEEccCCCCCCCCcc---cccc-ccccEEEcccccccCCCCccccCC-
Q 004400 160 TKLEKLFIQPSGLAGP--I--PSGIFSLENLTDLRISDLNGPEATFP---QLGN-MKMTKLILRNCNITGELPRYLGKM- 230 (756)
Q Consensus 160 ~~L~~L~l~~N~l~~~--~--p~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~-~~L~~L~L~~n~l~~~~p~~~~~l- 230 (756)
++|++|+|++|++.+. + +..+..+++|++|++++|.+...... .+.. .+|+.|+|++|.+++..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 9999999999987642 2 33346788999999999988654332 1233 368999999999998878777776
Q ss_pred --CCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchhhcCCCeeEeecCCCCCC
Q 004400 231 --TKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWMLERGDKIDLSYNNFTDG 292 (756)
Q Consensus 231 --~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~l~ls~N~l~~~ 292 (756)
++|++|+|++|+|+ .+|..+. ++|+.|+|++|++++......+++++.|++++|++++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSCC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCCC
Confidence 69999999999999 6777664 79999999999998642223368899999999998753
No 333
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=2e-25 Score=249.37 Aligned_cols=280 Identities=20% Similarity=0.203 Sum_probs=205.1
Q ss_pred eccceeccccccccCcccc----cCCcccCCCCCCCEEEccCCcccCccCccc-ccCC----cc-eeeccCccccc----
Q 004400 13 WKQKTVNQKRVLKEQNLTG----VLPPKLAELTFLQDIDLTLNYLSGTIPSQW-ASLP----LL-NISLIANRLKG---- 78 (756)
Q Consensus 13 ~~~~~~~~~l~L~~~~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~----~L-~l~l~~n~~~~---- 78 (756)
+..+..++.|+|++|++++ .++..+..+++|++|+|++|.++...+..+ ..++ .| +|++.+|++..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 5667788888999988885 456677788889999999988875444333 3344 45 58888888874
Q ss_pred cCCccCcCcCCCcEEEeecCcccccCCcccC-----CCCCCcEEeccCCeeccc----CCccccCCCCCCEEEeeCCccc
Q 004400 79 PIPKYLANISTLVNLTVQYNQFSGELPEELG-----SLLNLEKLHLSSNNFTGE----LPKTFAKLTNMKDFRISDNQFT 149 (756)
Q Consensus 79 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 149 (756)
.++..|.++++|++|+|++|.+++..+..+. .+++|++|+|++|++++. ++..+..+++|++|+|++|+++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 5688888888999999999988755444333 356799999999988863 3556677788999999999887
Q ss_pred ccCChhhcC-----cCCCcEEEccCCcCcCC----CCccccCCCCCCeEEccCCCCCCCCcccc------ccccccEEEc
Q 004400 150 GQIPSFIQN-----WTKLEKLFIQPSGLAGP----IPSGIFSLENLTDLRISDLNGPEATFPQL------GNMKMTKLIL 214 (756)
Q Consensus 150 ~~~p~~~~~-----l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~~------~~~~L~~L~L 214 (756)
...+..+.. +++|++|+|++|.++.. ++..+..+++|++|++++|.+.......+ ...+|++|++
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 655555543 56899999999988863 46677788899999999888766432221 1346889999
Q ss_pred ccccccCC----CCccccCCCCCcEEEccCCcCCCCCCccCcC-----CCCCCeEEecCccccccC----Cchh--hcCC
Q 004400 215 RNCNITGE----LPRYLGKMTKLKVLDLSFNRLRGQIPSNFDD-----LYDVDYIYFAGNLLTGAI----PPWM--LERG 279 (756)
Q Consensus 215 ~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~ls~N~l~~~~----p~~~--~~~l 279 (756)
++|.++.. ++..+..+++|++|+|++|.+++..+..+.. .++|+.|++++|.+++.. +.++ .+.+
T Consensus 264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 99988864 5667777888999999999887544433332 268889999999887652 3333 4788
Q ss_pred CeeEeecCCCCCC
Q 004400 280 DKIDLSYNNFTDG 292 (756)
Q Consensus 280 ~~l~ls~N~l~~~ 292 (756)
+.|++++|.+++.
T Consensus 344 ~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 344 LELQISNNRLEDA 356 (461)
T ss_dssp CEEECCSSBCHHH
T ss_pred cEEEccCCccccc
Confidence 8889988887654
No 334
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=5.4e-23 Score=216.94 Aligned_cols=223 Identities=17% Similarity=0.206 Sum_probs=173.4
Q ss_pred CCCCEEEccCCcccCccCcc---cccCCcc-eeeccCccccccCCccC--cCcCCCcEEEeecCcccccCC----cccCC
Q 004400 41 TFLQDIDLTLNYLSGTIPSQ---WASLPLL-NISLIANRLKGPIPKYL--ANISTLVNLTVQYNQFSGELP----EELGS 110 (756)
Q Consensus 41 ~~L~~L~L~~n~l~~~~p~~---~~~l~~L-~l~l~~n~~~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p----~~~~~ 110 (756)
..++.|.+.++.++...-.. +..++.| ++++.+|++.+..|..+ .++++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45788888888775321111 1122345 58888999998888888 889999999999999987655 34567
Q ss_pred CCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCccccc--C--ChhhcCcCCCcEEEccCCcCcCCCCc----cccC
Q 004400 111 LLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQ--I--PSFIQNWTKLEKLFIQPSGLAGPIPS----GIFS 182 (756)
Q Consensus 111 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~ 182 (756)
+++|++|+|++|++++..+..|..+++|++|+|++|++.+. + +..+.++++|++|+|++|+++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 88999999999999888888888999999999999987642 2 2334688899999999999973 333 2467
Q ss_pred CCCCCeEEccCCCCCCCCccccccc----cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCC
Q 004400 183 LENLTDLRISDLNGPEATFPQLGNM----KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVD 258 (756)
Q Consensus 183 l~~L~~L~l~~n~~~~~~~~~~~~~----~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 258 (756)
+++|++|++++|.+....+..+... +|++|+|++|+++ .+|..+. ++|+.|+|++|+|++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8899999999999988765555443 6999999999999 6677664 8999999999999964 44 68889999
Q ss_pred eEEecCccccc
Q 004400 259 YIYFAGNLLTG 269 (756)
Q Consensus 259 ~L~ls~N~l~~ 269 (756)
.|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999874
No 335
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=8.2e-22 Score=225.53 Aligned_cols=240 Identities=25% Similarity=0.302 Sum_probs=199.2
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEe
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTV 95 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L 95 (756)
..++.|+|++|+++. +|. .+++|+.|+|++|+|+ .+|. .++.| .|++.+|++.+ +|. .+++|+.|+|
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 689999999999994 555 5789999999999998 5665 55666 47888998885 454 5689999999
Q ss_pred ecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCC
Q 004400 96 QYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGP 175 (756)
Q Consensus 96 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 175 (756)
++|+|+ .+|.. +++|++|+|++|++++ +|. .+++|+.|++++|+|++ +| ..+++|+.|+|++|++++
T Consensus 129 ~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~- 195 (622)
T 3g06_A 129 FGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS- 195 (622)
T ss_dssp CSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred CCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-
Confidence 999999 46653 4899999999999994 554 35789999999999994 66 567899999999999995
Q ss_pred CCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCC
Q 004400 176 IPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLY 255 (756)
Q Consensus 176 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 255 (756)
+|.. +++|+.|++++|.+...+.. ..+|+.|+|++|.+++ +| ..+++|+.|+|++|.|+ .+|. .++
T Consensus 196 l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~ 261 (622)
T 3g06_A 196 LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS 261 (622)
T ss_dssp CCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred CCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence 5543 47999999999999876532 2469999999999996 55 45789999999999999 5665 678
Q ss_pred CCCeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCCcc
Q 004400 256 DVDYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSAES 296 (756)
Q Consensus 256 ~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~~~ 296 (756)
+|+.|+|++|.|+ .+|..+ +++++.|++++|++++..+..
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 9999999999999 778877 789999999999998755443
No 336
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.6e-22 Score=211.24 Aligned_cols=213 Identities=20% Similarity=0.284 Sum_probs=124.0
Q ss_pred ceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEE
Q 004400 16 KTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLT 94 (756)
Q Consensus 16 ~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~ 94 (756)
+....++.+..+++++.++ +..+++|+.|++++|.++. +| .+..++.| .|++.+|++.+..+ +.++++|++|+
T Consensus 18 l~~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~ 91 (308)
T 1h6u_A 18 LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE 91 (308)
T ss_dssp HHHHHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE
T ss_pred HHHHHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEE
Confidence 3445566677788776544 4567889999999998873 33 34444444 24455555443322 55555555555
Q ss_pred eecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcC
Q 004400 95 VQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAG 174 (756)
Q Consensus 95 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 174 (756)
|++|.+++ ++ .+..+++|++|+|++|++++ ++. +..+++|+.|+|++|++++..+ +.++++|+.|+|++|++++
T Consensus 92 L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 92 LSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence 55555542 22 35555555555555555553 221 4455555555555555553222 4455555555555555543
Q ss_pred CCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCC
Q 004400 175 PIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDL 254 (756)
Q Consensus 175 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 254 (756)
..+ +..+++ |+.|+|++|.+++..+ +..+++|++|+|++|++++..+ +..+
T Consensus 166 ~~~--l~~l~~-----------------------L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l 216 (308)
T 1h6u_A 166 LTP--LANLSK-----------------------LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT 216 (308)
T ss_dssp CGG--GTTCTT-----------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTC
T ss_pred Chh--hcCCCC-----------------------CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCC
Confidence 211 333444 5555566666664433 7778888888888888885443 7888
Q ss_pred CCCCeEEecCccccc
Q 004400 255 YDVDYIYFAGNLLTG 269 (756)
Q Consensus 255 ~~L~~L~ls~N~l~~ 269 (756)
++|+.|++++|++++
T Consensus 217 ~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 217 SNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEEEEEEEEEC
T ss_pred CCCCEEEccCCeeec
Confidence 888888888888873
No 337
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.6e-24 Score=234.51 Aligned_cols=251 Identities=20% Similarity=0.204 Sum_probs=135.3
Q ss_pred cccccccCcccc----cCCcccCCCCCCCEEEccCCcccCccCcc----cccCCcce-eeccCc---cccccCCccC---
Q 004400 20 QKRVLKEQNLTG----VLPPKLAELTFLQDIDLTLNYLSGTIPSQ----WASLPLLN-ISLIAN---RLKGPIPKYL--- 84 (756)
Q Consensus 20 ~~l~L~~~~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~-l~l~~n---~~~~~~p~~l--- 84 (756)
....|..++++. .++..+..+++|+.|+|++|.|+...+.. +..++.|+ |++.+| ++.+.+|..+
T Consensus 7 ~~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l 86 (386)
T 2ca6_A 7 EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86 (386)
T ss_dssp TTCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH
T ss_pred cCcccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH
Confidence 334444454442 55666777888888888888887543322 33444442 444442 3333344333
Q ss_pred ----cCcCCCcEEEeecCcccc----cCCcccCCCCCCcEEeccCCeecccCCcccc----CC---------CCCCEEEe
Q 004400 85 ----ANISTLVNLTVQYNQFSG----ELPEELGSLLNLEKLHLSSNNFTGELPKTFA----KL---------TNMKDFRI 143 (756)
Q Consensus 85 ----~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l---------~~L~~L~L 143 (756)
..+++|++|+|++|.|++ .+|..+..+++|++|+|++|+++...+..+. .+ ++|+.|+|
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 455555555555555554 2444555555555555555555432222222 22 55555555
Q ss_pred eCCccc-ccCC---hhhcCcCCCcEEEccCCcCcC-----CCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEc
Q 004400 144 SDNQFT-GQIP---SFIQNWTKLEKLFIQPSGLAG-----PIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLIL 214 (756)
Q Consensus 144 ~~N~l~-~~~p---~~~~~l~~L~~L~l~~N~l~~-----~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L 214 (756)
++|+++ +.++ ..+..+++|++|+|++|+++. ..+..+..+++|+ .|+|
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~-----------------------~L~L 223 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK-----------------------VLDL 223 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC-----------------------EEEC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc-----------------------EEEC
Confidence 555554 2233 244455555555555555541 1222444444554 4555
Q ss_pred cccccc----CCCCccccCCCCCcEEEccCCcCCCC----CCccC--cCCCCCCeEEecCccccc----cCCchh---hc
Q 004400 215 RNCNIT----GELPRYLGKMTKLKVLDLSFNRLRGQ----IPSNF--DDLYDVDYIYFAGNLLTG----AIPPWM---LE 277 (756)
Q Consensus 215 ~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~ls~N~l~~----~~p~~~---~~ 277 (756)
++|.++ +.+|..+..+++|+.|+|++|.+++. ++..+ ..+++|+.|+|++|.+++ .+|..+ ++
T Consensus 224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 555553 34555666666777777777766644 34444 236667777777777665 355554 46
Q ss_pred CCCeeEeecCCCCCCC
Q 004400 278 RGDKIDLSYNNFTDGS 293 (756)
Q Consensus 278 ~l~~l~ls~N~l~~~~ 293 (756)
+++.|++++|++++..
T Consensus 304 ~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 304 DLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTSBSCTTS
T ss_pred CceEEEccCCcCCcch
Confidence 6677777777766543
No 338
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=8.7e-22 Score=200.96 Aligned_cols=179 Identities=18% Similarity=0.212 Sum_probs=145.3
Q ss_pred eccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEee
Q 004400 18 VNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTVQ 96 (756)
Q Consensus 18 ~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L~ 96 (756)
..+.+++++++++ .+|..+. +.|+.|+|++|++++..+..|..++.| .|++.+|++.+..|..|.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3577889999998 5566665 688999999999998888788888887 47888888888888888888888888888
Q ss_pred cCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCC
Q 004400 97 YNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPI 176 (756)
Q Consensus 97 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 176 (756)
+|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 88888777777888888888888888888666666788888888888888888766667888888888888888888777
Q ss_pred CccccCCCCCCeEEccCCCCCCC
Q 004400 177 PSGIFSLENLTDLRISDLNGPEA 199 (756)
Q Consensus 177 p~~~~~l~~L~~L~l~~n~~~~~ 199 (756)
+..+..+++|+.|++++|.+...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 77788888888888777766543
No 339
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.5e-23 Score=222.13 Aligned_cols=251 Identities=14% Similarity=0.172 Sum_probs=155.0
Q ss_pred CCEEEccCCcccCccCcccccC--Ccc-eeeccCccccccCCccCcCcCCCcEEEeecCccccc-CCcccCCCCCCcEEe
Q 004400 43 LQDIDLTLNYLSGTIPSQWASL--PLL-NISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGE-LPEELGSLLNLEKLH 118 (756)
Q Consensus 43 L~~L~L~~n~l~~~~p~~~~~l--~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~ 118 (756)
++.|++++|.+. +..+..+ +.+ .+++.+|.+.+..+. +.++++|++|+|++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455666665554 2333333 333 355555555555444 34566677777777666644 556666666777777
Q ss_pred ccCCeecccCCccccCCCCCCEEEeeCC-cccc-cCChhhcCcCCCcEEEccCC-cCcCC-CCccccCCC-CCCeEEccC
Q 004400 119 LSSNNFTGELPKTFAKLTNMKDFRISDN-QFTG-QIPSFIQNWTKLEKLFIQPS-GLAGP-IPSGIFSLE-NLTDLRISD 193 (756)
Q Consensus 119 L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~-~~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~-~L~~L~l~~ 193 (756)
|++|++++..+..++.+++|++|+|++| .+++ .++..+.++++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777666666666666667777777766 4554 25555666667777777766 66543 455566666 677777766
Q ss_pred C--CCCC-CCcccccc-ccccEEEccccc-ccCCCCccccCCCCCcEEEccCCc-CCCCCCccCcCCCCCCeEEecCccc
Q 004400 194 L--NGPE-ATFPQLGN-MKMTKLILRNCN-ITGELPRYLGKMTKLKVLDLSFNR-LRGQIPSNFDDLYDVDYIYFAGNLL 267 (756)
Q Consensus 194 n--~~~~-~~~~~~~~-~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~ls~N~l 267 (756)
| .+.. ..+..+.. .+|+.|++++|. +++..+..+.++++|+.|+|++|. +.......+..+++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 6 3331 11122222 257777777787 666677788888999999999885 22222225778889999999988 3
Q ss_pred cccCCchhhcCCCeeEeecCCCCCCCCcccc
Q 004400 268 TGAIPPWMLERGDKIDLSYNNFTDGSAESSC 298 (756)
Q Consensus 268 ~~~~p~~~~~~l~~l~ls~N~l~~~~~~~~~ 298 (756)
+...-..+...+..|++++|++++..+....
T Consensus 284 ~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 284 PDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 3222222235577888899998887655444
No 340
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.9e-23 Score=225.44 Aligned_cols=248 Identities=17% Similarity=0.158 Sum_probs=201.2
Q ss_pred EEEccCCcccCccCcccccCCcc-eeeccCccccccCC----ccCcCcC-CCcEEEeecCcccccCCcccCCC-----CC
Q 004400 45 DIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIP----KYLANIS-TLVNLTVQYNQFSGELPEELGSL-----LN 113 (756)
Q Consensus 45 ~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p----~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~ 113 (756)
.++|++|.+++.+|..+...+.| .|++++|++....+ ..|.+++ +|++|+|++|.|++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 57899999999999988888867 59999999998777 7888898 99999999999998888877775 99
Q ss_pred CcEEeccCCeecccCCccccC----C-CCCCEEEeeCCcccccCChhhcC-----cCCCcEEEccCCcCcCCC----Ccc
Q 004400 114 LEKLHLSSNNFTGELPKTFAK----L-TNMKDFRISDNQFTGQIPSFIQN-----WTKLEKLFIQPSGLAGPI----PSG 179 (756)
Q Consensus 114 L~~L~L~~N~l~~~~p~~~~~----l-~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~l~~N~l~~~~----p~~ 179 (756)
|++|+|++|++++..+..+.. + ++|+.|+|++|++++..+..+.. .++|++|+|++|+++... +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999999777665444 4 89999999999999777766544 369999999999998643 344
Q ss_pred ccCCC-CCCeEEccCCCCCCCCcccccc------ccccEEEcccccccCC----CCccccC-CCCCcEEEccCCcCCCCC
Q 004400 180 IFSLE-NLTDLRISDLNGPEATFPQLGN------MKMTKLILRNCNITGE----LPRYLGK-MTKLKVLDLSFNRLRGQI 247 (756)
Q Consensus 180 ~~~l~-~L~~L~l~~n~~~~~~~~~~~~------~~L~~L~L~~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~ 247 (756)
+..++ +|++|++++|.+....+..+.. .+|+.|+|++|.+++. ++..+.. .++|++|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45565 9999999999998877654432 3799999999999964 4455555 469999999999999765
Q ss_pred C----ccCcCCCCCCeEEecCccccccCCchh---------hcCCCeeEeecCCCCCC
Q 004400 248 P----SNFDDLYDVDYIYFAGNLLTGAIPPWM---------LERGDKIDLSYNNFTDG 292 (756)
Q Consensus 248 p----~~~~~l~~L~~L~ls~N~l~~~~p~~~---------~~~l~~l~ls~N~l~~~ 292 (756)
+ ..+..+++|+.|++++|.+.+..+..+ ++.++.+|+++|++.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 5 446788999999999999764443321 45678899999998754
No 341
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.4e-23 Score=228.71 Aligned_cols=213 Identities=20% Similarity=0.254 Sum_probs=148.3
Q ss_pred cCCccCcCcCCCcEEEeecCcccccCC----cccCCCCCCcEEeccCC---eecccCCccc-------cCCCCCCEEEee
Q 004400 79 PIPKYLANISTLVNLTVQYNQFSGELP----EELGSLLNLEKLHLSSN---NFTGELPKTF-------AKLTNMKDFRIS 144 (756)
Q Consensus 79 ~~p~~l~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~N---~l~~~~p~~~-------~~l~~L~~L~L~ 144 (756)
.++..+..+++|+.|+|++|.|++..+ ..|..+++|++|+|++| ++++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455566666777777777777765433 33556777777777764 4444455444 566777777777
Q ss_pred CCcccc----cCChhhcCcCCCcEEEccCCcCcCCCCcccc----CC---------CCCCeEEccCCCCCCCCcc----c
Q 004400 145 DNQFTG----QIPSFIQNWTKLEKLFIQPSGLAGPIPSGIF----SL---------ENLTDLRISDLNGPEATFP----Q 203 (756)
Q Consensus 145 ~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~----~l---------~~L~~L~l~~n~~~~~~~~----~ 203 (756)
+|++++ .+|..+.++++|+.|+|++|.++...+..+. .+ ++|++|++++|.+...... .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777775 3566667777777777777777543333222 23 6777777777777643332 2
Q ss_pred ccc-ccccEEEccccccc--C---CCCccccCCCCCcEEEccCCcCC----CCCCccCcCCCCCCeEEecCcccccc---
Q 004400 204 LGN-MKMTKLILRNCNIT--G---ELPRYLGKMTKLKVLDLSFNRLR----GQIPSNFDDLYDVDYIYFAGNLLTGA--- 270 (756)
Q Consensus 204 ~~~-~~L~~L~L~~n~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~ls~N~l~~~--- 270 (756)
+.. .+|+.|+|++|.++ | ..+..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 222 25778888888887 2 34447889999999999999996 57888899999999999999999865
Q ss_pred -CCchh----hcCCCeeEeecCCCCC
Q 004400 271 -IPPWM----LERGDKIDLSYNNFTD 291 (756)
Q Consensus 271 -~p~~~----~~~l~~l~ls~N~l~~ 291 (756)
+|..+ +++++.|++++|.+++
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCH
Confidence 45544 6789999999999986
No 342
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.4e-21 Score=203.86 Aligned_cols=209 Identities=17% Similarity=0.239 Sum_probs=163.1
Q ss_pred eeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcc
Q 004400 69 ISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQF 148 (756)
Q Consensus 69 l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 148 (756)
+.+..+++...++ +.++++|+.|++++|.++ .++ .+..+++|++|+|++|++++..+ +..+++|+.|+|++|++
T Consensus 24 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 24 IAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHTTCSSTTSEEC--HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCceec--HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence 3444555544332 456778888888888887 454 57888888888888888884433 88888888888888888
Q ss_pred cccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccc
Q 004400 149 TGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYL 227 (756)
Q Consensus 149 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~ 227 (756)
++ ++ .+..+++|+.|+|++|++++. + .+..+++|+.|++++|.+....+ +..+ +|+.|+|++|.+++..+ +
T Consensus 98 ~~-~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l 169 (308)
T 1h6u_A 98 KN-VS-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L 169 (308)
T ss_dssp SC-CG-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CC-ch-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--h
Confidence 84 33 588888888888888888753 3 37888888888888888877654 4443 58899999999986544 8
Q ss_pred cCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchhhcCCCeeEeecCCCCCCC
Q 004400 228 GKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWMLERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 228 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~l~ls~N~l~~~~ 293 (756)
..+++|+.|+|++|.+++..+ +..+++|+.|++++|++++..|-..+++++.|++++|++++.+
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCC
T ss_pred cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCC
Confidence 999999999999999996544 8999999999999999997665444889999999999997644
No 343
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=3.9e-21 Score=206.29 Aligned_cols=238 Identities=15% Similarity=0.116 Sum_probs=113.9
Q ss_pred cccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCC-ccCcCcCCCcE-EEee
Q 004400 20 QKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIP-KYLANISTLVN-LTVQ 96 (756)
Q Consensus 20 ~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p-~~l~~l~~L~~-L~L~ 96 (756)
+.++-++++++ .+|..+. ++|+.|+|++|+|+...+.+|..++.| +|++++|++.+.+| .+|.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45556666777 4565553 567777777777774333445544444 24444444444333 23444444433 3334
Q ss_pred cCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeC-CcccccCChhhcCcCCCcEEEccCCcCcCC
Q 004400 97 YNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISD-NQFTGQIPSFIQNWTKLEKLFIQPSGLAGP 175 (756)
Q Consensus 97 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 175 (756)
.|+|+...|..|..+++|++|++++|+++...+..+....++..|++.+ |++....+..|..+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--------------- 153 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------- 153 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc---------------
Confidence 4444444444444444455555544444433333333344444444433 233333333333332
Q ss_pred CCccccCCCCCCeEEccCCCCCCCCccccccccccEEEccc-ccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCC
Q 004400 176 IPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRN-CNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDL 254 (756)
Q Consensus 176 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 254 (756)
..++.|++++|.+..+....+...+++.|++.+ |.++...++.|.++++|+.|||++|+|+...+..|.
T Consensus 154 --------~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~-- 223 (350)
T 4ay9_X 154 --------FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE-- 223 (350)
T ss_dssp --------SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT--
T ss_pred --------hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc--
Confidence 234445555555554444444444555555553 444433344566666666666666666643333333
Q ss_pred CCCCeEEecCccccccCCch-hhcCCCeeEeec
Q 004400 255 YDVDYIYFAGNLLTGAIPPW-MLERGDKIDLSY 286 (756)
Q Consensus 255 ~~L~~L~ls~N~l~~~~p~~-~~~~l~~l~ls~ 286 (756)
+|+.|.+.++.--..+|.- -+++|+.+++++
T Consensus 224 -~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 224 -NLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp -TCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred -cchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 3333333333222244431 145555555543
No 344
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=7.8e-21 Score=203.93 Aligned_cols=182 Identities=16% Similarity=0.080 Sum_probs=146.1
Q ss_pred eeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccC-cccccCCcc-e-eeccCccccccCCccCcCcCCCcEE
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIP-SQWASLPLL-N-ISLIANRLKGPIPKYLANISTLVNL 93 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L-~-l~l~~n~~~~~~p~~l~~l~~L~~L 93 (756)
+.+++|+|++|+|+.+.+..|.++++|+.|+|++|++.+.+| .+|.+++.+ + +.+..|++....|..|.++++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 468899999999997777789999999999999999976666 578888876 4 4566789998889999999999999
Q ss_pred EeecCcccccCCcccCCCCCCcEEeccC-CeecccCCccccCCC-CCCEEEeeCCcccccCChhhcCcCCCcEEEccC-C
Q 004400 94 TVQYNQFSGELPEELGSLLNLEKLHLSS-NNFTGELPKTFAKLT-NMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQP-S 170 (756)
Q Consensus 94 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~-N 170 (756)
++++|+|++..+..+....++..|++.+ |++....+..|..+. .|+.|+|++|+|+. +|......++|+.|++.+ |
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCC
Confidence 9999999977777788888999999965 678766666777775 68999999999994 555555667899999975 5
Q ss_pred cCcCCCCccccCCCCCCeEEccCCCCCCC
Q 004400 171 GLAGPIPSGIFSLENLTDLRISDLNGPEA 199 (756)
Q Consensus 171 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 199 (756)
.++...+..|.++++|+.|++++|.++.+
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 66643345677888888777766555443
No 345
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=9.8e-21 Score=213.97 Aligned_cols=190 Identities=24% Similarity=0.279 Sum_probs=106.1
Q ss_pred CCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEecc
Q 004400 42 FLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLS 120 (756)
Q Consensus 42 ~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 120 (756)
+|+.|+|++|+|++ +|..+. +.| .|++.+|++. .+| ..+++|+.|+|++|+|++ +|. |.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 77888888888875 554332 333 3555555555 444 334666666666666664 555 444 66666666
Q ss_pred CCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCC
Q 004400 121 SNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEAT 200 (756)
Q Consensus 121 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 200 (756)
+|+|++ +|. .+++|+.|+|++|+|++ +|. .+++|+.|+|++|+|++ +|. +. ++|+.|++++|.+..++
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchh
Confidence 666664 444 45666666666666664 443 45566666666666664 444 33 55555555554444322
Q ss_pred ccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh
Q 004400 201 FPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM 275 (756)
Q Consensus 201 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~ 275 (756)
. +.. +| +...+.|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+
T Consensus 197 ~--~~~-~L-----------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 197 A--VPV-RN-----------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp C--CC--------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred h--HHH-hh-----------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 2 111 22 001111266666666666 456655566666666677676666666554
No 346
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=6.8e-22 Score=210.96 Aligned_cols=251 Identities=18% Similarity=0.211 Sum_probs=206.0
Q ss_pred eeccccccccCcccccCCcccCCC--CCCCEEEccCCcccCccCcccccCCcc-eeeccCcccccc-CCccCcCcCCCcE
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAEL--TFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGP-IPKYLANISTLVN 92 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~-~p~~l~~l~~L~~ 92 (756)
..++.++|+++++. +..+..+ +.++.|++++|.+.+..+. +..++.| .+++.+|++.+. +|..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34788999999887 4556666 8999999999999977766 4467777 589999998876 8888999999999
Q ss_pred EEeecCcccccCCcccCCCCCCcEEeccCC-eeccc-CCccccCCCCCCEEEeeCC-ccccc-CChhhcCcC-CCcEEEc
Q 004400 93 LTVQYNQFSGELPEELGSLLNLEKLHLSSN-NFTGE-LPKTFAKLTNMKDFRISDN-QFTGQ-IPSFIQNWT-KLEKLFI 167 (756)
Q Consensus 93 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~-~L~~L~l 167 (756)
|+|++|.+++..+..|+.+++|++|+|++| .+++. ++..+.++++|++|+|++| .+++. ++..+..++ +|++|+|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999999888999999999999999999 68753 6777889999999999999 99864 678899999 9999999
Q ss_pred cCC--cCc-CCCCccccCCCCCCeEEccCCC-CCCCCccccccc-cccEEEccccc-ccCCCCccccCCCCCcEEEccCC
Q 004400 168 QPS--GLA-GPIPSGIFSLENLTDLRISDLN-GPEATFPQLGNM-KMTKLILRNCN-ITGELPRYLGKMTKLKVLDLSFN 241 (756)
Q Consensus 168 ~~N--~l~-~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~-~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N 241 (756)
++| .++ +.+|..+..+++|+.|++++|. ++...+..+... +|+.|++++|. +.......+.++++|+.|+|++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 455 4567778889999999999998 666656566554 69999999996 33222236889999999999999
Q ss_pred cCCCCCCccCcCC-CCCCeEEecCccccccCCchh
Q 004400 242 RLRGQIPSNFDDL-YDVDYIYFAGNLLTGAIPPWM 275 (756)
Q Consensus 242 ~l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~p~~~ 275 (756)
++ ...+..+ .++..|++++|.+++..|.++
T Consensus 283 -i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 283 -VP---DGTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp -SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred -cC---HHHHHHHHhhCcceEEecccCccccCCcc
Confidence 33 2234444 347777899999999988765
No 347
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.3e-20 Score=182.59 Aligned_cols=151 Identities=20% Similarity=0.206 Sum_probs=86.6
Q ss_pred eccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcCCCcEEEeec
Q 004400 18 VNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLVNLTVQY 97 (756)
Q Consensus 18 ~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~ 97 (756)
..+.++..++.++. +|..+ .++|+.|+|++|++++..+ ..|.++++|++|+|++
T Consensus 8 ~~~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L~l~~ 61 (208)
T 2o6s_A 8 SGTTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPN-----------------------GVFDELTSLTQLYLGG 61 (208)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCT-----------------------TTTTTCTTCSEEECCS
T ss_pred CCCEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCCh-----------------------hhhcccccCcEEECCC
Confidence 34556666666663 34333 2466777777776663333 3345555666666666
Q ss_pred CcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCC
Q 004400 98 NQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIP 177 (756)
Q Consensus 98 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 177 (756)
|+|++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|.++++|+.|+|++|++++..+
T Consensus 62 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 66664444445566666666666666664444445566666666666666665555555666666666666666665444
Q ss_pred ccccCCCCCCeEEccCC
Q 004400 178 SGIFSLENLTDLRISDL 194 (756)
Q Consensus 178 ~~~~~l~~L~~L~l~~n 194 (756)
..+..+++|+.|++++|
T Consensus 142 ~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTTTCTTCCEEECCSC
T ss_pred HHhccCCCccEEEecCC
Confidence 44555555555555544
No 348
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=7.7e-20 Score=206.63 Aligned_cols=184 Identities=23% Similarity=0.287 Sum_probs=121.4
Q ss_pred CCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEcc
Q 004400 89 TLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQ 168 (756)
Q Consensus 89 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 168 (756)
+|+.|+|++|+|++ +|..+. ++|++|+|++|+|+ .+| ..+++|+.|+|++|+|++ +|. |.+ +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 55666666666653 444442 45666666666665 444 234566666666666664 444 443 56666666
Q ss_pred CCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCC
Q 004400 169 PSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIP 248 (756)
Q Consensus 169 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 248 (756)
+|+|++ +|. .+++|+.|++++|.+..++. ...+|+.|+|++|.|++ +|. |. ++|+.|+|++|.|+ .+|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 666654 444 45666666666666655333 22357778888888886 666 65 89999999999999 677
Q ss_pred ccCcCCCCC-------CeEEecCccccccCCchh--hcCCCeeEeecCCCCCCCCccccc
Q 004400 249 SNFDDLYDV-------DYIYFAGNLLTGAIPPWM--LERGDKIDLSYNNFTDGSAESSCQ 299 (756)
Q Consensus 249 ~~~~~l~~L-------~~L~ls~N~l~~~~p~~~--~~~l~~l~ls~N~l~~~~~~~~~~ 299 (756)
. |.. +| +.|+|++|.|+ .+|..+ +++++.|++++|++++..+...+.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 6 554 77 99999999999 678766 789999999999999865554443
No 349
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.4e-19 Score=178.89 Aligned_cols=174 Identities=18% Similarity=0.175 Sum_probs=99.5
Q ss_pred eeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcc
Q 004400 69 ISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQF 148 (756)
Q Consensus 69 l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 148 (756)
++..++.+. .+|..+ .++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus 12 v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 12 VECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 334444443 334333 24566666666666654444556666666666666666644444455666666666666666
Q ss_pred cccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCcccc
Q 004400 149 TGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLG 228 (756)
Q Consensus 149 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 228 (756)
++..+..|.++++|++|+|++|++++..+..+..+++|+.| +|++|.+++..+..|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-----------------------~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL-----------------------RLYQNQLKSVPDGVFD 145 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-----------------------ECCSSCCSCCCTTTTT
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE-----------------------ECCCCccceeCHHHhc
Confidence 65444555566666666666666654444444444444444 4444555555555566
Q ss_pred CCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh
Q 004400 229 KMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM 275 (756)
Q Consensus 229 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~ 275 (756)
.+++|+.|+|++|.+.+ .+++|++|+++.|.++|.+|.++
T Consensus 146 ~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp TCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred cCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccC
Confidence 67777777777776553 23456667777777777666543
No 350
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=178.21 Aligned_cols=157 Identities=19% Similarity=0.263 Sum_probs=116.5
Q ss_pred cEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCC-ccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccC
Q 004400 91 VNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELP-KTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQP 169 (756)
Q Consensus 91 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 169 (756)
+.+++++|.++ .+|..+.. .+++|+|++|+|++..+ ..|..+++|+.|+|++|+|++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777776 45655433 45677777777775544 3466777777777777777766666777777777777777
Q ss_pred CcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCc
Q 004400 170 SGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPS 249 (756)
Q Consensus 170 N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 249 (756)
|++++..+..|..+++|++|+ |++|.+++..|..|.++++|+.|+|++|+|++..|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~-----------------------Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLM-----------------------LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEE-----------------------CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred CccCccCHhHhcCCcCCCEEE-----------------------CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 777765555666666666554 445667767778888999999999999999988899
Q ss_pred cCcCCCCCCeEEecCccccccCCc
Q 004400 250 NFDDLYDVDYIYFAGNLLTGAIPP 273 (756)
Q Consensus 250 ~~~~l~~L~~L~ls~N~l~~~~p~ 273 (756)
.|..+++|+.|+|++|++.|.++-
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECSGGG
T ss_pred HhcCCCCCCEEEecCcCCcCCCch
Confidence 999999999999999999987764
No 351
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=4.5e-19 Score=176.80 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=105.6
Q ss_pred cEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCC
Q 004400 91 VNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPS 170 (756)
Q Consensus 91 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 170 (756)
+.+++++|.++ .+|..+. ++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 35566666665 4554443 45666666666666555555666666666666666666555666666666666666666
Q ss_pred cCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCcc
Q 004400 171 GLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSN 250 (756)
Q Consensus 171 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 250 (756)
+|+...+..|..+++|+.| +|++|.+++..|..|..+++|+.|+|++|.|++..+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L-----------------------~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLL-----------------------LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEE-----------------------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cCCccCHhHccCCCCCCEE-----------------------ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence 6664333344555555544 44456666667778888899999999999999888888
Q ss_pred CcCCCCCCeEEecCccccccCC
Q 004400 251 FDDLYDVDYIYFAGNLLTGAIP 272 (756)
Q Consensus 251 ~~~l~~L~~L~ls~N~l~~~~p 272 (756)
|..+++|+.|+|++|++.+...
T Consensus 148 ~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTTCTTCCEEECCSSCEECSGG
T ss_pred HhCCCCCCEEEeCCCCcCCCCc
Confidence 8999999999999999987655
No 352
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2e-19 Score=187.54 Aligned_cols=193 Identities=21% Similarity=0.296 Sum_probs=115.9
Q ss_pred cceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcCCCcEEE
Q 004400 15 QKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLVNLT 94 (756)
Q Consensus 15 ~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~~L~ 94 (756)
.+..+.++.+..+.+++..+ +..+++|+.|++++|.++.. + .+..+++|+.|+
T Consensus 22 ~l~~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~------------------------~~~~l~~L~~L~ 74 (291)
T 1h6t_A 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q------------------------GIQYLPNVTKLF 74 (291)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T------------------------TGGGCTTCCEEE
T ss_pred HHHHHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h------------------------hHhcCCCCCEEE
Confidence 34445555666666665533 34567777777777777621 1 144556666666
Q ss_pred eecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcC
Q 004400 95 VQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAG 174 (756)
Q Consensus 95 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 174 (756)
|++|++++..+ +.++++|++|+|++|++++ ++ .+..+++|+.|+|++|++++ + ..+..+++|+.|+|++|++++
T Consensus 75 L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 75 LNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC
T ss_pred ccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc
Confidence 66666664322 6666666666666666653 22 25666666666666666663 2 345566666666666666653
Q ss_pred CCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCC
Q 004400 175 PIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDL 254 (756)
Q Consensus 175 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 254 (756)
. ..+..+++|+.| +|++|.+++..+ +..+++|+.|+|++|.+++ ++ .+..+
T Consensus 149 ~--~~l~~l~~L~~L-----------------------~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l 199 (291)
T 1h6t_A 149 I--TVLSRLTKLDTL-----------------------SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGL 199 (291)
T ss_dssp C--GGGGGCTTCSEE-----------------------ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTC
T ss_pred c--hhhccCCCCCEE-----------------------EccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccC
Confidence 2 344444444444 444455554433 6677777788888877774 34 37777
Q ss_pred CCCCeEEecCccccc
Q 004400 255 YDVDYIYFAGNLLTG 269 (756)
Q Consensus 255 ~~L~~L~ls~N~l~~ 269 (756)
++|+.|++++|+++.
T Consensus 200 ~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 200 KNLDVLELFSQECLN 214 (291)
T ss_dssp TTCSEEEEEEEEEEC
T ss_pred CCCCEEECcCCcccC
Confidence 788888888887764
No 353
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2e-18 Score=173.31 Aligned_cols=156 Identities=24% Similarity=0.288 Sum_probs=104.7
Q ss_pred CcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccC
Q 004400 90 LVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQP 169 (756)
Q Consensus 90 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 169 (756)
.+.++.+++.++ .+|..+. ++|++|+|++|+|++..|..|..+++|+.|+|++|+|+...+..|.++++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345666666665 4554333 5666666666666655566666666666666666666644445556666666666666
Q ss_pred CcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCc
Q 004400 170 SGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPS 249 (756)
Q Consensus 170 N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 249 (756)
|++++..+..|..+++|+.|+ |++|+++ .+|..+..+++|+.|+|++|+|++..+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~-----------------------Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELF-----------------------MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEE-----------------------CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CcCCccChhHhCcchhhCeEe-----------------------ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 666654444455555555544 3445555 5566778889999999999999977777
Q ss_pred cCcCCCCCCeEEecCccccccCC
Q 004400 250 NFDDLYDVDYIYFAGNLLTGAIP 272 (756)
Q Consensus 250 ~~~~l~~L~~L~ls~N~l~~~~p 272 (756)
.|..+++|+.|++++|++.|.++
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHhCCCCCCEEEeeCCCccCCcc
Confidence 88899999999999999988776
No 354
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=5.6e-19 Score=184.13 Aligned_cols=187 Identities=21% Similarity=0.342 Sum_probs=143.0
Q ss_pred eeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcc
Q 004400 69 ISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQF 148 (756)
Q Consensus 69 l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 148 (756)
+.+..+.+....+ +..+++|+.|++++|.++. ++ .+..+++|++|+|++|++++..+ +..+++|+.|+|++|++
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 4455555544332 4577888999999998884 44 48888889999999998885444 88888888888888888
Q ss_pred cccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCcccc
Q 004400 149 TGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLG 228 (756)
Q Consensus 149 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 228 (756)
++ ++ .+..+++|++|+|++|++++. ..+..+++|+.|+ +++|.+++. ..+.
T Consensus 103 ~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~-----------------------l~~n~l~~~--~~l~ 153 (291)
T 1h6t_A 103 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY-----------------------LGNNKITDI--TVLS 153 (291)
T ss_dssp CC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEE-----------------------CCSSCCCCC--GGGG
T ss_pred CC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEE-----------------------ccCCcCCcc--hhhc
Confidence 84 33 378888888888888888752 4555666666555 555666644 5688
Q ss_pred CCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCc-hhhcCCCeeEeecCCCCCCC
Q 004400 229 KMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPP-WMLERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 229 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~l~~l~ls~N~l~~~~ 293 (756)
.+++|+.|+|++|.+++..+ +..+++|+.|++++|.+++. |. .-+++|+.|++++|+++..+
T Consensus 154 ~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEECCC
T ss_pred cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccCCc
Confidence 99999999999999997655 99999999999999999864 43 22789999999999988754
No 355
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=2.8e-19 Score=192.54 Aligned_cols=179 Identities=22% Similarity=0.236 Sum_probs=129.2
Q ss_pred eeeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccC-CCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCC
Q 004400 68 NISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELG-SLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDN 146 (756)
Q Consensus 68 ~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 146 (756)
.++..+|++. .+|..+. ..++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|.++++|+.|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4566666666 4666554 4577888888888876666676 7888888888888888766677788888888888888
Q ss_pred cccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCcc
Q 004400 147 QFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRY 226 (756)
Q Consensus 147 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 226 (756)
+|++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++| .|++..+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-----------------------~l~~l~~~~ 155 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-----------------------QISRFPVEL 155 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-----------------------CCCSCCGGG
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-----------------------cCCeeCHHH
Confidence 888666677778888888888888887666777777777776665554 444333333
Q ss_pred c---cCCCCCcEEEccCCcCCCCCCccCcCCCC--CCeEEecCccccccCC
Q 004400 227 L---GKMTKLKVLDLSFNRLRGQIPSNFDDLYD--VDYIYFAGNLLTGAIP 272 (756)
Q Consensus 227 ~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~ls~N~l~~~~p 272 (756)
| ..+++|+.|+|++|+|++..+..+..++. ++.|+|++|++.|.+.
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 3 56888888899988888665567777776 4788999998887654
No 356
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=6.8e-21 Score=219.61 Aligned_cols=137 Identities=13% Similarity=0.069 Sum_probs=82.7
Q ss_pred cCcCCCcEEEccCCcCcCCCCccccC-CCCCCeEEcc----CCCCCCCCcc-----ccc-cccccEEEccccc--ccCCC
Q 004400 157 QNWTKLEKLFIQPSGLAGPIPSGIFS-LENLTDLRIS----DLNGPEATFP-----QLG-NMKMTKLILRNCN--ITGEL 223 (756)
Q Consensus 157 ~~l~~L~~L~l~~N~l~~~~p~~~~~-l~~L~~L~l~----~n~~~~~~~~-----~~~-~~~L~~L~L~~n~--l~~~~ 223 (756)
..+++|++|+++.|++++..+..+.. +++|+.|+++ .|.++..+.. .+. ..+|++|+|+.|. +++..
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 34556666666555555544444444 6666666664 3444432111 111 2247777776433 55444
Q ss_pred Ccccc-CCCCCcEEEccCCcCCC-CCCccCcCCCCCCeEEecCccccccCCchh---hcCCCeeEeecCCCCCCC
Q 004400 224 PRYLG-KMTKLKVLDLSFNRLRG-QIPSNFDDLYDVDYIYFAGNLLTGAIPPWM---LERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 224 p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~---~~~l~~l~ls~N~l~~~~ 293 (756)
...+. .+++|+.|+|++|.+++ .++..+..+++|+.|++++|.+++....++ +++++.|++++|++++.+
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 44443 37788888888888775 334455777888888888888765433333 678888888888877654
No 357
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.78 E-value=5.5e-20 Score=188.17 Aligned_cols=137 Identities=18% Similarity=0.145 Sum_probs=107.3
Q ss_pred CccccCcccCCCCccEEEeec-cCCcE--EEEEEccccCcc------------------------cHHHHHHHHHHHHhC
Q 004400 417 NFATDNNIGEGGFGPVYKGLL-ADGTA--IAVKQLSSKSKQ------------------------GNREFINEIGMISAL 469 (756)
Q Consensus 417 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~E~~~l~~l 469 (756)
-|...+.||+|+||.||+|.. .+|+. ||||+++..... ....+.+|+.++.++
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 127 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA 127 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999997 78989 999987543111 113678899999999
Q ss_pred CCCce--eeEeeEEEeCCeEEEEEEecCC-C----CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCeEcCC
Q 004400 470 QHPNL--VKLYGCCIEGNQLLLIYEYLEN-N----SLARALFEHRLKLDWPTRRRICLGIARGLAYLH-GESRIKVVHRD 541 (756)
Q Consensus 470 ~h~ni--v~l~~~~~~~~~~~lV~e~~~~-g----sL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH-~~g~~~iiH~D 541 (756)
+|+++ ..++++ +..++||||+.+ | +|.++... .++..+..++.|++.||+||| +.| |+|||
T Consensus 128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~~~g---ivHrD 196 (258)
T 1zth_A 128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQEAE---LVHAD 196 (258)
T ss_dssp HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHHTSC---EECSS
T ss_pred HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHHHCC---EEeCC
Confidence 88764 334432 356899999942 4 77766432 235567899999999999999 886 99999
Q ss_pred CCCCceEecCCCCEEEccCCccccC
Q 004400 542 IKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 542 ikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
|||+|||++. .++|+|||+|...
T Consensus 197 lkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 197 LSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp CSTTSEEESS--SEEECCCTTCEET
T ss_pred CCHHHEEEcC--cEEEEECcccccC
Confidence 9999999998 8999999999753
No 358
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=4.6e-19 Score=202.52 Aligned_cols=192 Identities=21% Similarity=0.304 Sum_probs=135.3
Q ss_pred ccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcE
Q 004400 14 KQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVN 92 (756)
Q Consensus 14 ~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~ 92 (756)
..+..+..+.|..+.+.+.++ +..|++|+.|+|++|.|+. ++ .+..++.|+ |+|.+|++.+..| |.++++|+.
T Consensus 18 ~~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 91 (605)
T 1m9s_A 18 DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91 (605)
T ss_dssp HHHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred HHHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence 345566777788888887655 5677888999999998873 44 467777774 7777777776554 777888888
Q ss_pred EEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcC
Q 004400 93 LTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGL 172 (756)
Q Consensus 93 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 172 (756)
|+|++|.|++ +| .|..+++|+.|+|++|+|++ + ..+..+++|+.|+|++|+|++. ..|..+++|+.|+|++|++
T Consensus 92 L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 92 LFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp EECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred EECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence 8888888874 33 57788888888888888874 3 3477788888888888888754 5677788888888888888
Q ss_pred cCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccC
Q 004400 173 AGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITG 221 (756)
Q Consensus 173 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~ 221 (756)
.+..| +..+++|+.|+|++|.+... +.+..+ +|+.|+|++|.+.+
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 76555 77777777777777666554 122222 35555555555554
No 359
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=173.43 Aligned_cols=151 Identities=14% Similarity=0.197 Sum_probs=84.1
Q ss_pred ccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcCCCcEEEeecC
Q 004400 19 NQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLVNLTVQYN 98 (756)
Q Consensus 19 ~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N 98 (756)
.+.+++++|+++. +|..+. ..++.|+|++|+|++..|. ..|.++++|+.|+|++|
T Consensus 13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~----------------------~~~~~l~~L~~L~L~~N 67 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEAT----------------------GIFKKLPQLRKINFSNN 67 (220)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCC----------------------CCGGGCTTCCEEECCSS
T ss_pred CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCch----------------------hhhccCCCCCEEECCCC
Confidence 4566677777663 455443 3456677777766644321 23445555555555555
Q ss_pred cccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCc
Q 004400 99 QFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPS 178 (756)
Q Consensus 99 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 178 (756)
+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|++++..|.
T Consensus 68 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 68 KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 55555555555555555555555555554444555555555555555555555555555555555555555555555555
Q ss_pred cccCCCCCCeEEccCC
Q 004400 179 GIFSLENLTDLRISDL 194 (756)
Q Consensus 179 ~~~~l~~L~~L~l~~n 194 (756)
.|..+++|+.|++++|
T Consensus 148 ~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 148 AFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTTTCTTCCEEECCSC
T ss_pred HhcCCCCCCEEEecCc
Confidence 5555555555554443
No 360
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=7.6e-19 Score=200.74 Aligned_cols=185 Identities=19% Similarity=0.323 Sum_probs=127.3
Q ss_pred eeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcc
Q 004400 69 ISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQF 148 (756)
Q Consensus 69 l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 148 (756)
+.+..+.+....+ +..|++|+.|+|++|.|. .++ .|..|++|+.|+|++|+|++..+ +..+++|+.|+|++|+|
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 4444455444333 456677777777777776 333 46777777777777777775443 66777777777777777
Q ss_pred cccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccc
Q 004400 149 TGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYL 227 (756)
Q Consensus 149 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~ 227 (756)
++ +| .+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+... ..+..+ +|+.|+|++|.+++..| +
T Consensus 100 ~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 100 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp CC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence 73 33 567777777777777777642 4566777777777777776665 333333 57777788888886665 7
Q ss_pred cCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccc
Q 004400 228 GKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTG 269 (756)
Q Consensus 228 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 269 (756)
..+++|+.|+|++|.|++. | .+..+++|+.|+|++|++.+
T Consensus 172 ~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred ccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence 8888888888888888853 3 57888888888888888874
No 361
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=6.4e-19 Score=189.77 Aligned_cols=175 Identities=20% Similarity=0.221 Sum_probs=95.1
Q ss_pred cccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCc-CcCCCcEEEeecC
Q 004400 20 QKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLA-NISTLVNLTVQYN 98 (756)
Q Consensus 20 ~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~-~l~~L~~L~L~~N 98 (756)
+.+++++++++. +|..+. +.++.|+|++|+|++..+ ..|. ++++|+.|+|++|
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~-----------------------~~~~~~l~~L~~L~L~~N 74 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRA-----------------------EWTPTRLTNLHSLLLSHN 74 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECT-----------------------TSSSSCCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccCh-----------------------hhhhhcccccCEEECCCC
Confidence 455666666663 444443 345666666666654443 3344 5555555555555
Q ss_pred cccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCc
Q 004400 99 QFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPS 178 (756)
Q Consensus 99 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 178 (756)
+|++..+..|.++++|++|+|++|+|++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+.
T Consensus 75 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 75 HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 55554445555555555555555555544444555555555555555555555555555555555555555555532222
Q ss_pred cc---cCCCCCCeEEccCCCCCCCCcccccccc---ccEEEccccccc
Q 004400 179 GI---FSLENLTDLRISDLNGPEATFPQLGNMK---MTKLILRNCNIT 220 (756)
Q Consensus 179 ~~---~~l~~L~~L~l~~n~~~~~~~~~~~~~~---L~~L~L~~n~l~ 220 (756)
.+ ..+++|+.|+|++|.+.......+..+. ++.|+|++|.+.
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 22 3456666666666666555544433331 456777777776
No 362
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.9e-18 Score=172.29 Aligned_cols=150 Identities=18% Similarity=0.201 Sum_probs=86.2
Q ss_pred cccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcCCCcEEEeecCc
Q 004400 20 QKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLVNLTVQYNQ 99 (756)
Q Consensus 20 ~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~ 99 (756)
+.+++++++++ .+|..+. +.|+.|+|++|+|++ ..+..|.++++|+.|+|++|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~-----------------------i~~~~~~~l~~L~~L~Ls~N~ 67 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKV-----------------------IPPGAFSPYKKLRRIDLSNNQ 67 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCE-----------------------ECTTSSTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCC-----------------------cCHhHhhCCCCCCEEECCCCc
Confidence 45556666665 3344343 456666666666553 333445555666666666666
Q ss_pred ccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCcc
Q 004400 100 FSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSG 179 (756)
Q Consensus 100 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 179 (756)
|++..|..|.++++|++|+|++|+|+...+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|++++..+..
T Consensus 68 i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 68 ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence 66555566666666666666666666444444555666666666666666555566666666666666666666555555
Q ss_pred ccCCCCCCeEEccCCC
Q 004400 180 IFSLENLTDLRISDLN 195 (756)
Q Consensus 180 ~~~l~~L~~L~l~~n~ 195 (756)
+..+++|+.|++++|.
T Consensus 148 ~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HhCCCCCCEEEeCCCC
Confidence 5555555555555543
No 363
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=5e-18 Score=170.33 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=90.3
Q ss_pred ccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcE
Q 004400 14 KQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVN 92 (756)
Q Consensus 14 ~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~ 92 (756)
....+...++.++++++ .+|..+. ++|+.|+|++|.|++..|..|..++.|+ |++.+|++....+..|.++++|+.
T Consensus 16 ~~~Cs~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92 (229)
T ss_dssp TCEEETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEeCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence 33445667888887777 5565554 7788888888888866565555555552 555555554444444555555555
Q ss_pred EEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcC
Q 004400 93 LTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGL 172 (756)
Q Consensus 93 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 172 (756)
|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 555555555444444555555555555555555 4455555555555555555555544444455555555555555555
Q ss_pred c
Q 004400 173 A 173 (756)
Q Consensus 173 ~ 173 (756)
.
T Consensus 172 ~ 172 (229)
T 3e6j_A 172 D 172 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 364
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=2e-19 Score=210.71 Aligned_cols=190 Identities=18% Similarity=0.172 Sum_probs=123.3
Q ss_pred CCCCEEEccCCcccCccCcccccCCc--c---eeeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCc
Q 004400 41 TFLQDIDLTLNYLSGTIPSQWASLPL--L---NISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLE 115 (756)
Q Consensus 41 ~~L~~L~L~~n~l~~~~p~~~~~l~~--L---~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 115 (756)
+.++.|+|.+|.+.......+..+.. + .+++..|++. ..|..|..++.|+.|+|++|.|. .+|..+.++++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 34556666666665322222221111 1 1234445554 67888999999999999999999 7888888999999
Q ss_pred EEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCC
Q 004400 116 KLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLN 195 (756)
Q Consensus 116 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 195 (756)
+|+|++|+|+ .+|..|.+|++|+.|+|++|+|+ .+|..|++|++|++|+|++|.|+ .+|..|..+++|+.|+|++|.
T Consensus 251 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred EEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence 9999999999 89999999999999999999999 78999999999999999999998 789899999999999999999
Q ss_pred CCCCCcccccccc--ccEEEcccccccCCCCccccCCCCCcEEEccCC
Q 004400 196 GPEATFPQLGNMK--MTKLILRNCNITGELPRYLGKMTKLKVLDLSFN 241 (756)
Q Consensus 196 ~~~~~~~~~~~~~--L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 241 (756)
+....+..+...+ ...|+|++|.+++.+|.. |..|++++|
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 9887777765543 345778899998888764 445666666
No 365
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=2.7e-20 Score=211.51 Aligned_cols=189 Identities=16% Similarity=0.142 Sum_probs=109.4
Q ss_pred CCCCCCCEEEccCCcccCccCcccccCCcce-eeccCcc-------------ccccCCccCcCcCCCcEEE-eecCcccc
Q 004400 38 AELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANR-------------LKGPIPKYLANISTLVNLT-VQYNQFSG 102 (756)
Q Consensus 38 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~-------------~~~~~p~~l~~l~~L~~L~-L~~N~l~~ 102 (756)
...++|+.|+|++|+|+ .+|..++.++.|+ |++.+|. +.+..|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 55677888888888887 7788888777774 5554443 4455555666666666666 4554432
Q ss_pred cCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccC
Q 004400 103 ELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFS 182 (756)
Q Consensus 103 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 182 (756)
+|..+.+++|.++...+ ..|+.|+|++|+|++ +|. |+++++|+.|+|++|+|+ .+|..++.
T Consensus 424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 23334444444442111 236667777777764 454 666777777777777776 56666666
Q ss_pred CCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCC-CccCcCCCCCCeEE
Q 004400 183 LENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQI-PSNFDDLYDVDYIY 261 (756)
Q Consensus 183 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~ 261 (756)
+++|+.|+|++| .|++ +| .|+++++|+.|+|++|+|++.. |..|..+++|+.|+
T Consensus 485 l~~L~~L~Ls~N-----------------------~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 485 LRCLEVLQASDN-----------------------ALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp CTTCCEEECCSS-----------------------CCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCC-----------------------CCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 666666555544 3333 23 4455555555555555555444 55555555555555
Q ss_pred ecCccccccCC
Q 004400 262 FAGNLLTGAIP 272 (756)
Q Consensus 262 ls~N~l~~~~p 272 (756)
|++|++++..|
T Consensus 540 L~~N~l~~~~~ 550 (567)
T 1dce_A 540 LQGNSLCQEEG 550 (567)
T ss_dssp CTTSGGGGSSS
T ss_pred ecCCcCCCCcc
Confidence 55555554433
No 366
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=6.9e-18 Score=165.14 Aligned_cols=157 Identities=20% Similarity=0.284 Sum_probs=122.2
Q ss_pred cCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCC
Q 004400 83 YLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKL 162 (756)
Q Consensus 83 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 162 (756)
....+++|+.|++++|.|+ .+| .+..+++|++|+|++|.++ .+..+..+++|+.|++++|++++..+..|+++++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 3477889999999999998 666 6889999999999999776 34478889999999999999998788889999999
Q ss_pred cEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCc
Q 004400 163 EKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNR 242 (756)
Q Consensus 163 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 242 (756)
++|+|++|++++..|..+..+++|+.|++++|.. ++ .+| .+..+++|+.|++++|.
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~----------------------i~-~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA----------------------IT-DIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB----------------------CC-CCG-GGGGCSSCCEEECTTBC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC----------------------cc-ccH-hhcCCCCCCEEECCCCC
Confidence 9999999999877788888888888777666541 22 233 46777788888888888
Q ss_pred CCCCCCccCcCCCCCCeEEecCccccc
Q 004400 243 LRGQIPSNFDDLYDVDYIYFAGNLLTG 269 (756)
Q Consensus 243 l~~~~p~~~~~l~~L~~L~ls~N~l~~ 269 (756)
+++ ++ .+..+++|+.|++++|++.+
T Consensus 171 i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 171 VHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 775 33 57777888888888887753
No 367
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2.8e-18 Score=175.97 Aligned_cols=169 Identities=19% Similarity=0.282 Sum_probs=108.8
Q ss_pred ccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcc-eeeccCccccccCCccCcCcCCCcE
Q 004400 14 KQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLL-NISLIANRLKGPIPKYLANISTLVN 92 (756)
Q Consensus 14 ~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~~l~~L~~ 92 (756)
.++..+..+.|+++++++.. .+..+++|+.|++++|.|+ .++ .+..++.| .|++.+|++.+..+ |.++++|+.
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 46777888899999998664 5788899999999999998 444 45666666 36666666664433 666666666
Q ss_pred EEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcC
Q 004400 93 LTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGL 172 (756)
Q Consensus 93 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 172 (756)
|+|++|+|++ +|. +.. ++|+.|+|++|++++ ++ .+..+++|+.|+|++|++++. + .+..+++|+.|+|++|++
T Consensus 90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 6666666663 332 222 666666666666663 22 366666666666666666643 3 466666666666666666
Q ss_pred cCCCCccccCCCCCCeEEccCCCCC
Q 004400 173 AGPIPSGIFSLENLTDLRISDLNGP 197 (756)
Q Consensus 173 ~~~~p~~~~~l~~L~~L~l~~n~~~ 197 (756)
++. ..+..+++|+.|++++|.+.
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred cch--HHhccCCCCCEEeCCCCccc
Confidence 643 44555555555555554443
No 368
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=9.5e-20 Score=206.95 Aligned_cols=187 Identities=17% Similarity=0.157 Sum_probs=135.4
Q ss_pred cCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCe-------------ecccCCccccCCCCCCEEE-eeCCcccc
Q 004400 85 ANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNN-------------FTGELPKTFAKLTNMKDFR-ISDNQFTG 150 (756)
Q Consensus 85 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~ 150 (756)
..+++|+.|+|++|+|+ .+|.++++|++|+.|++++|. +.+.+|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788888889998887 788888888888888887765 4455666666666666666 5555433
Q ss_pred cCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcccccccCCCCccccC
Q 004400 151 QIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGK 229 (756)
Q Consensus 151 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~ 229 (756)
.|..+.+.+|.++...+ ..|+.|++++|.+..++. ++.+ +|+.|+|++|.|+ .+|..|++
T Consensus 424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC--ccccccCcEeecCccccc-ccchhhhc
Confidence 11122222333321111 135555555555555322 3333 4666777788888 77889999
Q ss_pred CCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccC-Cchh--hcCCCeeEeecCCCCCCCC
Q 004400 230 MTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAI-PPWM--LERGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 230 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-p~~~--~~~l~~l~ls~N~l~~~~~ 294 (756)
+++|+.|+|++|.|++ +| .+..+++|+.|+|++|.+++.. |..+ +++|+.|++++|++++.++
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999999999999996 67 8999999999999999999886 8777 8899999999999987654
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=4.4e-18 Score=174.52 Aligned_cols=164 Identities=23% Similarity=0.387 Sum_probs=102.8
Q ss_pred eeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcc
Q 004400 69 ISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQF 148 (756)
Q Consensus 69 l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 148 (756)
+.+..|.+.... .+.++++|+.|++++|.|+ .++ .+..+++|++|+|++|++++..+ +..+++|+.|+|++|++
T Consensus 24 l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 24 QNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence 455555555332 4566666666666666666 344 46666666666666666664333 66666666666666666
Q ss_pred cccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCCcccc
Q 004400 149 TGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELPRYLG 228 (756)
Q Consensus 149 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 228 (756)
++ +|.. .. ++|+.|+|++|++++. ..+..+++|+ .|+|++|++++. + .+.
T Consensus 98 ~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~-----------------------~L~Ls~N~i~~~-~-~l~ 147 (263)
T 1xeu_A 98 KN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLE-----------------------ILSIRNNKLKSI-V-MLG 147 (263)
T ss_dssp SC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCC-----------------------EEECTTSCCCBC-G-GGG
T ss_pred CC-cCcc-cc-CcccEEEccCCccCCC--hhhcCccccc-----------------------EEECCCCcCCCC-h-HHc
Confidence 63 3322 22 5566666666666532 2344444444 455555666644 2 577
Q ss_pred CCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCcccccc
Q 004400 229 KMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGA 270 (756)
Q Consensus 229 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 270 (756)
.+++|+.|+|++|++++. ..+..+++|+.|++++|++++.
T Consensus 148 ~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 888888888888888865 6688888888888888888754
No 370
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2.8e-17 Score=160.78 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=95.7
Q ss_pred CCCCCCCEEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcE
Q 004400 38 AELTFLQDIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEK 116 (756)
Q Consensus 38 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 116 (756)
..+++|+.|++++|.++ .+| .+..++.|+ |++.+|.+. .+..+..+++|++|+|++|++++..+..|+.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56677888888888887 444 455666553 556655433 2335666667777777777776656666666777777
Q ss_pred EeccCCeecccCCccccCCCCCCEEEeeCCc-ccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCC
Q 004400 117 LHLSSNNFTGELPKTFAKLTNMKDFRISDNQ-FTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLN 195 (756)
Q Consensus 117 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 195 (756)
|+|++|++++..|..+..+++|++|+|++|+ ++ .+| .+.++++|+.|++++|++++ ++ .+..+++|+.|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 7777777766566666666777777777776 44 444 46666667777777766663 33 55666666666666655
Q ss_pred C
Q 004400 196 G 196 (756)
Q Consensus 196 ~ 196 (756)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 4
No 371
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.9e-17 Score=161.21 Aligned_cols=81 Identities=16% Similarity=0.316 Sum_probs=42.4
Q ss_pred cEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCc-cccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccC
Q 004400 91 VNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPK-TFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQP 169 (756)
Q Consensus 91 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 169 (756)
+.|++++|+++ .+|..+.. +|++|+|++|+|++..+. .|..+++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555554 44544433 555555555555543332 255555555555555555555555555555555555555
Q ss_pred CcCcC
Q 004400 170 SGLAG 174 (756)
Q Consensus 170 N~l~~ 174 (756)
|++++
T Consensus 88 N~l~~ 92 (192)
T 1w8a_A 88 NKIKE 92 (192)
T ss_dssp CCCCE
T ss_pred CcCCc
Confidence 55443
No 372
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=4.6e-17 Score=158.54 Aligned_cols=153 Identities=17% Similarity=0.248 Sum_probs=118.4
Q ss_pred cEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCCh-hhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccC
Q 004400 115 EKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPS-FIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISD 193 (756)
Q Consensus 115 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 193 (756)
+.|++++|+|+ .+|..+.. +|++|+|++|+|++..+. .|.++++|++|+|++|++++..|..|.++++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls- 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG- 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC-
Confidence 78899999997 77776643 899999999999866654 48889999999999999988888888888877776655
Q ss_pred CCCCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCc
Q 004400 194 LNGPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPP 273 (756)
Q Consensus 194 n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 273 (756)
+|++++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+++|.++.
T Consensus 87 ----------------------~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 87 ----------------------ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp ----------------------SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred ----------------------CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 5666667777788899999999999999988899999999999999999999988774
Q ss_pred hh-hcCCCeeEeecCCCCCCC
Q 004400 274 WM-LERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 274 ~~-~~~l~~l~ls~N~l~~~~ 293 (756)
.. ...++...+.++...|..
T Consensus 145 ~~~~~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 145 AWFAEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp HHHHHHHHHHCCSGGGCBBCS
T ss_pred hHHHHHHHHcCCCCCCCCCCC
Confidence 32 233333334444444433
No 373
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=7e-18 Score=197.62 Aligned_cols=190 Identities=19% Similarity=0.129 Sum_probs=112.7
Q ss_pred eeccccccccCcccccCCcccCCCCCCC-----EEEccCCcccCccCcccccCCcce-eeccCccccccCCccCcCcCCC
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAELTFLQ-----DIDLTLNYLSGTIPSQWASLPLLN-ISLIANRLKGPIPKYLANISTL 90 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~l~~L~-----~L~L~~n~l~~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~l~~L 90 (756)
....+|.|.+|++... +..+.....|. .++++.|.+. ..|..+..++.|+ |+|.+|++. .+|..+.++++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 3467788888888753 43332222222 2233334444 5577788888884 788888877 777777788999
Q ss_pred cEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCC
Q 004400 91 VNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPS 170 (756)
Q Consensus 91 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 170 (756)
+.|+|++|.|+ .+|..|++|++|++|+|++|+|+ .+|..|.+|++|+.|+|++|.|+ .+|..|+++++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 99999999998 88888999999999999999998 77888989999999999999988 77888999999999999999
Q ss_pred cCcCCCCccccCCCC-CCeEEccCCCCCCCCccccccccccEEEcccc
Q 004400 171 GLAGPIPSGIFSLEN-LTDLRISDLNGPEATFPQLGNMKMTKLILRNC 217 (756)
Q Consensus 171 ~l~~~~p~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n 217 (756)
+|++.+|..+..+.. +..|++++|.+....+.. +..|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-----l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-----RRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccc-----cceeEeecc
Confidence 998888877765432 234678888887665543 455666666
No 374
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=2.9e-18 Score=197.57 Aligned_cols=276 Identities=13% Similarity=0.084 Sum_probs=173.5
Q ss_pred ccceeccccccccCcc---cccCCcccC------------CCCCCCEEEccCCcccCccCcccccC--Ccc-eeeccCcc
Q 004400 14 KQKTVNQKRVLKEQNL---TGVLPPKLA------------ELTFLQDIDLTLNYLSGTIPSQWASL--PLL-NISLIANR 75 (756)
Q Consensus 14 ~~~~~~~~l~L~~~~l---~~~~p~~l~------------~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L-~l~l~~n~ 75 (756)
..+..+++|+|+++.. .+.+|..+. .+++|+.|+|++|.+++..+..+... +.| .|++.+|.
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 4455677777766532 133443333 67788888888888776666555543 325 36666654
Q ss_pred -ccc-cCCccCcCcCCCcEEEeecCccccc----CCcccCCCCCCcEEeccCCeec----ccCCccccCCCCCCEEEeeC
Q 004400 76 -LKG-PIPKYLANISTLVNLTVQYNQFSGE----LPEELGSLLNLEKLHLSSNNFT----GELPKTFAKLTNMKDFRISD 145 (756)
Q Consensus 76 -~~~-~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~----~~~p~~~~~l~~L~~L~L~~ 145 (756)
+.. .++..+.++++|++|+|++|.+++. ++..+.++++|++|+|++|+++ +.++..+.++++|+.|+|++
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 211 1233334678888888888887755 3334556788888888888886 33444556778888888888
Q ss_pred CcccccCChhhcCcCCCcEEEccCCcCc---CCCCccccCCCCCCeEEccCCCCCCCCcccccc-ccccEEEcccccccC
Q 004400 146 NQFTGQIPSFIQNWTKLEKLFIQPSGLA---GPIPSGIFSLENLTDLRISDLNGPEATFPQLGN-MKMTKLILRNCNITG 221 (756)
Q Consensus 146 N~l~~~~p~~~~~l~~L~~L~l~~N~l~---~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~ 221 (756)
|.+.+ +|..+.++++|++|.++.+... +..+..+..+++|+.|+++++..... +..+.. .+|++|+|++|.+++
T Consensus 230 ~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 230 FEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp CBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCCH
T ss_pred ccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCcCCH
Confidence 88874 6677888888888888754332 23455667777888888776433222 222332 358888888887654
Q ss_pred CCC-ccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecC-----------ccccccCCchh---hcCCCeeEeec
Q 004400 222 ELP-RYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAG-----------NLLTGAIPPWM---LERGDKIDLSY 286 (756)
Q Consensus 222 ~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~-----------N~l~~~~p~~~---~~~l~~l~ls~ 286 (756)
... ..+..+++|+.|+|++|...+.++..+..+++|+.|++++ |.+++.....+ +++|+.|+++.
T Consensus 308 ~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 433 3356788888888874332333344445677788888883 55553322221 56778888877
Q ss_pred CCCCC
Q 004400 287 NNFTD 291 (756)
Q Consensus 287 N~l~~ 291 (756)
|.+++
T Consensus 388 ~~l~~ 392 (592)
T 3ogk_B 388 SDITN 392 (592)
T ss_dssp SCCCH
T ss_pred CCccH
Confidence 77664
No 375
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.65 E-value=2.5e-17 Score=174.78 Aligned_cols=137 Identities=12% Similarity=0.149 Sum_probs=99.2
Q ss_pred CccccCcccCCCCccEEEeeccCCcEEEEEEccccCc--------------ccHHH--------HHHHHHHHHhCCCCce
Q 004400 417 NFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSK--------------QGNRE--------FINEIGMISALQHPNL 474 (756)
Q Consensus 417 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~--------------~~~~~--------~~~E~~~l~~l~h~ni 474 (756)
-|.+...||+|+||.||+|...+|+.||||+++.... ..... ..+|...|.++.+.++
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3889999999999999999988999999998753210 00111 2345666666644443
Q ss_pred eeEeeEEEeCCeEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCC
Q 004400 475 VKLYGCCIEGNQLLLIYEYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLN 554 (756)
Q Consensus 475 v~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~ 554 (756)
.-..-+... ..++||||++|++|.++. +......++.|++.+|.|||+.| ||||||||.|||+++++.
T Consensus 176 ~vp~p~~~~--~~~LVME~i~G~~L~~l~-------~~~~~~~l~~qll~~l~~lH~~g---IVHrDLKp~NILl~~dgd 243 (397)
T 4gyi_A 176 PVPEPIAQS--RHTIVMSLVDALPMRQVS-------SVPDPASLYADLIALILRLAKHG---LIHGDFNEFNILIREEKD 243 (397)
T ss_dssp SCCCEEEEE--TTEEEEECCSCEEGGGCC-------CCSCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEEEEEC
T ss_pred CCCeeeecc--CceEEEEecCCccHhhhc-------ccHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeCCCC
Confidence 211111111 237999999998875432 22345678899999999999997 999999999999988763
Q ss_pred ----------EEEccCCcccc
Q 004400 555 ----------SKISDFGLAKL 565 (756)
Q Consensus 555 ----------~kl~DFGla~~ 565 (756)
+.|+||+.+..
T Consensus 244 ~~d~~~~~~~~~iID~~Q~V~ 264 (397)
T 4gyi_A 244 AEDPSSITLTPIIIXFPQMVS 264 (397)
T ss_dssp SSCTTSEEEEEEECCCTTCEE
T ss_pred cccccccccceEEEEeCCccc
Confidence 89999998864
No 376
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=1.1e-17 Score=192.73 Aligned_cols=179 Identities=14% Similarity=0.072 Sum_probs=96.5
Q ss_pred CCCCCcEEeccCCeecccCC-ccccCCCCCCEEEeeCCcccc-cCChhhcCcCCCcEEEccC---------CcCcCCCCc
Q 004400 110 SLLNLEKLHLSSNNFTGELP-KTFAKLTNMKDFRISDNQFTG-QIPSFIQNWTKLEKLFIQP---------SGLAGPIPS 178 (756)
Q Consensus 110 ~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~~---------N~l~~~~p~ 178 (756)
.+++|++|+|++|.+++... ..+..+++|+.|++++| ++. .++.....+++|++|+|.+ +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 56778888888888664322 22456778888888877 332 2233334567777777732 344332222
Q ss_pred ccc-CCCCCCeEEccCCCCCCCCccccc--cccccEEEcc--c----ccccCCC-----CccccCCCCCcEEEccCCcCC
Q 004400 179 GIF-SLENLTDLRISDLNGPEATFPQLG--NMKMTKLILR--N----CNITGEL-----PRYLGKMTKLKVLDLSFNRLR 244 (756)
Q Consensus 179 ~~~-~l~~L~~L~l~~n~~~~~~~~~~~--~~~L~~L~L~--~----n~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~ 244 (756)
.+. .+++|+.|+++.|.++......+. ..+|+.|+|+ + |.++... +..+..+++|+.|+|++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 222 366677776666666554433332 2246666666 3 3444211 11244556666666655 444
Q ss_pred CCCCccCcC-CCCCCeEEecCccccccCCchh---hcCCCeeEeecCCCC
Q 004400 245 GQIPSNFDD-LYDVDYIYFAGNLLTGAIPPWM---LERGDKIDLSYNNFT 290 (756)
Q Consensus 245 ~~~p~~~~~-l~~L~~L~ls~N~l~~~~p~~~---~~~l~~l~ls~N~l~ 290 (756)
+..+..+.. +++|+.|+|++|.+++..+..+ +++|+.|++++|+++
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 333333333 5666666666666654433332 456666666666653
No 377
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.8e-16 Score=146.72 Aligned_cols=85 Identities=19% Similarity=0.317 Sum_probs=57.0
Q ss_pred CCCcEEEeecCccc-ccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEE
Q 004400 88 STLVNLTVQYNQFS-GELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLF 166 (756)
Q Consensus 88 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 166 (756)
++|+.|+|++|.++ +.+|..+..+++|++|+|++|++++. ..+..+++|+.|+|++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777776 56666666677777777777776644 5566667777777777777655666666666666666
Q ss_pred ccCCcCcC
Q 004400 167 IQPSGLAG 174 (756)
Q Consensus 167 l~~N~l~~ 174 (756)
|++|++++
T Consensus 102 Ls~N~l~~ 109 (168)
T 2ell_A 102 LSGNKLKD 109 (168)
T ss_dssp CBSSSCCS
T ss_pred ccCCccCc
Confidence 66666653
No 378
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=7.3e-16 Score=146.49 Aligned_cols=133 Identities=23% Similarity=0.173 Sum_probs=67.9
Q ss_pred CCCCEEEccCCccc-CccCcccccCCcceeeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEec
Q 004400 41 TFLQDIDLTLNYLS-GTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHL 119 (756)
Q Consensus 41 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 119 (756)
++|+.|+|++|.++ +.+|..+. .+++|+.|+|++|.|++. ..|..+++|++|+|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-----------------------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L 78 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-----------------------EFVNLEFLSLINVGLISV--SNLPKLPKLKKLEL 78 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-----------------------GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHH-----------------------hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEEC
Confidence 66777888777776 44444444 444555555555555432 44445555555555
Q ss_pred cCCeecccCCccccCCCCCCEEEeeCCcccccC-ChhhcCcCCCcEEEccCCcCcCCCC---ccccCCCCCCeEEccCCC
Q 004400 120 SSNNFTGELPKTFAKLTNMKDFRISDNQFTGQI-PSFIQNWTKLEKLFIQPSGLAGPIP---SGIFSLENLTDLRISDLN 195 (756)
Q Consensus 120 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L~l~~n~ 195 (756)
++|++++.+|..+..+++|+.|+|++|++++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.
T Consensus 79 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 555555444444444555555555555554321 1444555555555555555553322 244455555555555554
Q ss_pred CCC
Q 004400 196 GPE 198 (756)
Q Consensus 196 ~~~ 198 (756)
+.+
T Consensus 159 ~~~ 161 (168)
T 2ell_A 159 DQE 161 (168)
T ss_dssp SCB
T ss_pred hhh
Confidence 444
No 379
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=147.44 Aligned_cols=93 Identities=23% Similarity=0.280 Sum_probs=49.7
Q ss_pred CccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcC
Q 004400 81 PKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWT 160 (756)
Q Consensus 81 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 160 (756)
|..|.++++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|+...+..|..++
T Consensus 47 p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (193)
T 2wfh_A 47 PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126 (193)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc
Confidence 33444555555555555555544444555555555555555555554444555555555555555555544444455555
Q ss_pred CCcEEEccCCcCc
Q 004400 161 KLEKLFIQPSGLA 173 (756)
Q Consensus 161 ~L~~L~l~~N~l~ 173 (756)
+|+.|+|++|.+.
T Consensus 127 ~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 127 ALSHLAIGANPLY 139 (193)
T ss_dssp TCCEEECCSSCEE
T ss_pred cccEEEeCCCCee
Confidence 5555555555554
No 380
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=146.50 Aligned_cols=130 Identities=19% Similarity=0.277 Sum_probs=78.1
Q ss_pred EEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCC
Q 004400 116 KLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLN 195 (756)
Q Consensus 116 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 195 (756)
.+++++|+++ .+|..+. ++|+.|+|++|+|+ .+|..|.++++|+.|+|++|++++..+..|.++++|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~----- 84 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI----- 84 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-----
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE-----
Confidence 3444444444 3333221 34445555555544 3444455555555555555555444444444444444443
Q ss_pred CCCCCccccccccccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCC
Q 004400 196 GPEATFPQLGNMKMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIP 272 (756)
Q Consensus 196 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 272 (756)
|++|.+++..+..|.++++|+.|+|++|.|++..+..|..+++|+.|+|++|++.|.+.
T Consensus 85 ------------------Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 85 ------------------LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp ------------------CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ------------------CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 33345555556678888888888889898887666678889999999999999887655
No 381
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=9.8e-16 Score=142.47 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=50.9
Q ss_pred CCCcEEEeecCccc-ccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEE
Q 004400 88 STLVNLTVQYNQFS-GELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLF 166 (756)
Q Consensus 88 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 166 (756)
++|+.|++++|.++ +.+|..+..+++|++|+|++|++++. ..+..+++|+.|+|++|++++.+|..+.++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 55555566666666666666666643 4455666666666666666654555555566666666
Q ss_pred ccCCcCc
Q 004400 167 IQPSGLA 173 (756)
Q Consensus 167 l~~N~l~ 173 (756)
+++|+++
T Consensus 95 ls~N~i~ 101 (149)
T 2je0_A 95 LSGNKIK 101 (149)
T ss_dssp CTTSCCC
T ss_pred CCCCcCC
Confidence 6665555
No 382
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=4.6e-17 Score=187.55 Aligned_cols=278 Identities=15% Similarity=0.164 Sum_probs=175.7
Q ss_pred ccceeccccccccCcccccCCcccC-CCCCCCEEEccCC-cccCc-cCcccccCCcc-eeeccCccccccCCccCc----
Q 004400 14 KQKTVNQKRVLKEQNLTGVLPPKLA-ELTFLQDIDLTLN-YLSGT-IPSQWASLPLL-NISLIANRLKGPIPKYLA---- 85 (756)
Q Consensus 14 ~~~~~~~~l~L~~~~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L-~l~l~~n~~~~~~p~~l~---- 85 (756)
..+..++.|+|++|.+++..+..+. .+++|+.|+|++| .++.. ++..+..++.| .|++.+|.+.+..+..+.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4566777777877777766655554 5677777777777 44422 34444456666 366777766554433333
Q ss_pred CcCCCcEEEeecCc--ccc-cCCcccCCCCCCcEEeccCC----------------------------------------
Q 004400 86 NISTLVNLTVQYNQ--FSG-ELPEELGSLLNLEKLHLSSN---------------------------------------- 122 (756)
Q Consensus 86 ~l~~L~~L~L~~N~--l~~-~~p~~~~~l~~L~~L~L~~N---------------------------------------- 122 (756)
.+++|+.|+|++|. ++. .++..+.++++|++|+|++|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 45567777777665 211 11111233466666666655
Q ss_pred ----------eecc----cCCccccCCCCCCEEEeeCCcccccC-ChhhcCcCCCcEEEccCCcCcCC-CCccccCCCCC
Q 004400 123 ----------NFTG----ELPKTFAKLTNMKDFRISDNQFTGQI-PSFIQNWTKLEKLFIQPSGLAGP-IPSGIFSLENL 186 (756)
Q Consensus 123 ----------~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L 186 (756)
.+.. .++..+..+++|+.|+|++|.+++.. ...+.++++|+.|++++| +... ++.....+++|
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 1110 12222335789999999999977443 334668999999999988 4422 22233358999
Q ss_pred CeEEccC---------CCCCCCCccccc--cccccEEEcccccccCCCCcccc-CCCCCcEEEcc--C----CcCCCCC-
Q 004400 187 TDLRISD---------LNGPEATFPQLG--NMKMTKLILRNCNITGELPRYLG-KMTKLKVLDLS--F----NRLRGQI- 247 (756)
Q Consensus 187 ~~L~l~~---------n~~~~~~~~~~~--~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~~- 247 (756)
++|++++ +.++......+. ..+|+.|.+..|.+++.....+. .+++|+.|+|+ + |.+++..
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 9999944 334332222222 34689999999999876666665 58999999999 4 5565321
Q ss_pred ----CccCcCCCCCCeEEecCccccccCCchh---hcCCCeeEeecCCCCCCC
Q 004400 248 ----PSNFDDLYDVDYIYFAGNLLTGAIPPWM---LERGDKIDLSYNNFTDGS 293 (756)
Q Consensus 248 ----p~~~~~l~~L~~L~ls~N~l~~~~p~~~---~~~l~~l~ls~N~l~~~~ 293 (756)
+..+..+++|+.|++++ .+++..+..+ +++|+.|++++|.+++..
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 12266788999999977 6665444443 678999999999986543
No 383
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=2.7e-15 Score=159.17 Aligned_cols=235 Identities=11% Similarity=0.026 Sum_probs=132.9
Q ss_pred eeccccccccCcccccCCcccCC-CCCCCEEEccCCccc--CccCcccccCCcce-eeccCccccccCCccCcC------
Q 004400 17 TVNQKRVLKEQNLTGVLPPKLAE-LTFLQDIDLTLNYLS--GTIPSQWASLPLLN-ISLIANRLKGPIPKYLAN------ 86 (756)
Q Consensus 17 ~~~~~l~L~~~~l~~~~p~~l~~-l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~-l~l~~n~~~~~~p~~l~~------ 86 (756)
..++.|.++++ +...--..+.. +++|+.|||++|+|. ...+..+.. ++ +.+..| ..-+.+|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~---~~~~~~~~~---~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPN---GKFYIYMAN---FVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGG---GCCEEECTT---EECTTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccc---ccccccccc---ccCHHHhcccccccc
Confidence 44555665543 22111122333 788999999999998 222222222 22 222222 223345666
Q ss_pred --cCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcc----cccCChhhcC--
Q 004400 87 --ISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQF----TGQIPSFIQN-- 158 (756)
Q Consensus 87 --l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~p~~~~~-- 158 (756)
+++|+.|+|.+ .++.+.+.+|.++++|+.|+|++|.++.+.+..|.++.++..+.+..+.. ......+|.+
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 89999999988 78867777888999999999999988767777788777777666655321 1111122222
Q ss_pred ------------------------------------------------cCCCcEEEccCCcCcCCCCccccCCCCCCeEE
Q 004400 159 ------------------------------------------------WTKLEKLFIQPSGLAGPIPSGIFSLENLTDLR 190 (756)
Q Consensus 159 ------------------------------------------------l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 190 (756)
+++|+.|+|++|+++...+.+|.++++|+.|+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 45555555555555544444555555555555
Q ss_pred ccCCCCCCCCcccccccc-cc-EEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEE
Q 004400 191 ISDLNGPEATFPQLGNMK-MT-KLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIY 261 (756)
Q Consensus 191 l~~n~~~~~~~~~~~~~~-L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 261 (756)
+.+| +..+....|.... |+ .+.+.+ .++.+.+.+|.++++|+.|++++|.++...+..|.++++|+.++
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5554 4444444444442 55 555555 44444445555555555555555555544445555555555544
No 384
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.1e-15 Score=142.06 Aligned_cols=111 Identities=20% Similarity=0.163 Sum_probs=56.3
Q ss_pred CCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCccccc-CChhhcC
Q 004400 80 IPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQ-IPSFIQN 158 (756)
Q Consensus 80 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~ 158 (756)
+|..+..+++|+.|+|++|.+++. ..++.+++|++|+|++|++++.+|..+..+++|+.|++++|++++. .+..+.+
T Consensus 34 ~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~ 111 (149)
T 2je0_A 34 LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK 111 (149)
T ss_dssp CCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGG
T ss_pred HHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhh
Confidence 333444445555555555555533 4455555555555555555544454444455555555555555532 2244555
Q ss_pred cCCCcEEEccCCcCcCCCC---ccccCCCCCCeEEcc
Q 004400 159 WTKLEKLFIQPSGLAGPIP---SGIFSLENLTDLRIS 192 (756)
Q Consensus 159 l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L~l~ 192 (756)
+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 112 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 112 LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555555555554333 245555555555554
No 385
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=6.9e-15 Score=141.05 Aligned_cols=114 Identities=21% Similarity=0.251 Sum_probs=69.7
Q ss_pred CCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcc
Q 004400 136 TNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILR 215 (756)
Q Consensus 136 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~ 215 (756)
++|+.|++++|++++..+..|.++++|++|+|++|++++..+..+..+++|+.|+ |+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-----------------------l~ 84 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY-----------------------LH 84 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE-----------------------CC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE-----------------------CC
Confidence 3444555555554443344444455555555555555433333344444444433 33
Q ss_pred cccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCC
Q 004400 216 NCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIP 272 (756)
Q Consensus 216 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 272 (756)
+|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++.|.+|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 455555555667778888888888888887666667888888888888888887766
No 386
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=8.9e-15 Score=140.25 Aligned_cols=130 Identities=19% Similarity=0.275 Sum_probs=66.7
Q ss_pred ccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcCCCcEEEeecC
Q 004400 19 NQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLVNLTVQYN 98 (756)
Q Consensus 19 ~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N 98 (756)
.+.+++++++++. +|..+. ++|+.|+|++|++++.. +..|.++++|++|+|++|
T Consensus 9 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~l~~n~l~~~~-----------------------~~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLP-----------------------HGVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TTEEECCSSCCSS-CCTTCC--TTCSEEECCSSCCCCCC-----------------------TTTTTTCTTCSEEECCSS
T ss_pred CCEEEecCCCCcc-CCCCCC--CCCcEEEeCCCcccEeC-----------------------HHHhcCcccccEEECCCC
Confidence 4455555555553 233222 45555555555555322 233444555555555555
Q ss_pred cccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcC
Q 004400 99 QFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAG 174 (756)
Q Consensus 99 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 174 (756)
+|++..+..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+.+
T Consensus 63 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 63 QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 5554444445555555555555555554444445555555555555555554444444555555555555555543
No 387
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=5e-14 Score=152.96 Aligned_cols=263 Identities=10% Similarity=0.082 Sum_probs=200.0
Q ss_pred ccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcCCCcEE
Q 004400 14 KQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLVNL 93 (756)
Q Consensus 14 ~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~~L 93 (756)
..+..+..+.+.+ +++.+-..+|.+. +|+.++|.+| ++.+-..+|.+....++.+. +++...-+.+|.++++|+.+
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp-~~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFP-STLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECC-TTCCEECSSTTTTCTTCCEE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeC-CCccEehHHHhhCcccCCee
Confidence 3445666666664 5666667788875 7999999876 77566677877543356655 47777777899999999999
Q ss_pred EeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCc
Q 004400 94 TVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLA 173 (756)
Q Consensus 94 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 173 (756)
+|++|+++.....+|. ..+|+.+.|..| ++.+-...|.++++|+.++|.+| ++.....+|.+ .+|+.+.|. +.++
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 9999999955556666 689999999855 77567778999999999999876 56566778888 789999994 5576
Q ss_pred CCCCccccCCCCCCeEEccCCCCC-----CCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCC
Q 004400 174 GPIPSGIFSLENLTDLRISDLNGP-----EATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQI 247 (756)
Q Consensus 174 ~~~p~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 247 (756)
.....+|.++++|+.+++.+|.+. .+....|... +|+.+.|. +.++.+...+|.++++|+.++|..| ++...
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 667888999999999999887765 3555556555 69999999 4577677788999999999999666 67677
Q ss_pred CccCcCCCCCCeEEecCccccccCCchh--h-cCCCeeEeecCC
Q 004400 248 PSNFDDLYDVDYIYFAGNLLTGAIPPWM--L-ERGDKIDLSYNN 288 (756)
Q Consensus 248 p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~-~~l~~l~ls~N~ 288 (756)
..+|.++ +|+.+++++|.+....+..+ + ..+..+.+..+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 7889999 99999999998874333333 2 345666665543
No 388
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=1e-13 Score=150.40 Aligned_cols=244 Identities=11% Similarity=0.032 Sum_probs=189.6
Q ss_pred CCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEe
Q 004400 39 ELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLH 118 (756)
Q Consensus 39 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 118 (756)
.+..++.+.+.+ .++.+-..+|......++.+. +++...-..+|.+. +|+.+.|.+ .++.+.+.+|.++.+|+.++
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~-~~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNSQIAKVVLN-EGLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTCCCSEEECC-TTCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccCCccEEEeC-CCccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 347788888866 466566677887643356654 44777777788884 799999986 67767778999999999999
Q ss_pred ccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCC
Q 004400 119 LSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPE 198 (756)
Q Consensus 119 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 198 (756)
|++|+++.+....|. .++|+.+.|.+| ++.....+|.++++|+.+.|..| ++.....+|.+ .+|+.+.+. +++..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence 999999955555665 689999999855 77677889999999999999975 55455666666 899999994 56777
Q ss_pred CCccccccc-cccEEEccccccc-----CCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCC
Q 004400 199 ATFPQLGNM-KMTKLILRNCNIT-----GELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIP 272 (756)
Q Consensus 199 ~~~~~~~~~-~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 272 (756)
+....|... +|+.+.+.+|.+. ...+.+|.++++|+.++|.+ .++.....+|.++.+|+.+.|..| ++..-+
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 777777766 6999999988775 45667899999999999994 577677789999999999999666 553334
Q ss_pred chh--hcCCCeeEeecCCCCCCCC
Q 004400 273 PWM--LERGDKIDLSYNNFTDGSA 294 (756)
Q Consensus 273 ~~~--~~~l~~l~ls~N~l~~~~~ 294 (756)
..+ . +|+.+++++|.+.....
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCC
T ss_pred HhCCCC-CCCEEEEcCCCCccccc
Confidence 444 4 88999999998765443
No 389
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=8.8e-17 Score=157.38 Aligned_cols=150 Identities=23% Similarity=0.317 Sum_probs=91.2
Q ss_pred eccceeccccccccCcccccCCc------ccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcC
Q 004400 13 WKQKTVNQKRVLKEQNLTGVLPP------KLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLAN 86 (756)
Q Consensus 13 ~~~~~~~~~l~L~~~~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~ 86 (756)
|.....+..++|+.++++|.+|. .|..+++|+.|+|++|.|++ + | .+.+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l-----------------------~-~~~~ 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-I-----------------------S-SLSG 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-C-----------------------C-CHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-c-----------------------c-cccc
Confidence 55566777777777777777666 67777777777777777763 3 3 4555
Q ss_pred cCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCC-hhhcCcCCCcEE
Q 004400 87 ISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIP-SFIQNWTKLEKL 165 (756)
Q Consensus 87 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L 165 (756)
+++|+.|+|++|.|+ .+|..+..+++|++|+|++|++++ +| .+..+++|+.|+|++|++++..+ ..+..+++|++|
T Consensus 69 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 566666666666665 455555555666666666666653 33 35556666666666666653222 355566666666
Q ss_pred EccCCcCcCCCCcc----------ccCCCCCCeEE
Q 004400 166 FIQPSGLAGPIPSG----------IFSLENLTDLR 190 (756)
Q Consensus 166 ~l~~N~l~~~~p~~----------~~~l~~L~~L~ 190 (756)
++++|.+.+..|.. +..+++|+.||
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 66666665444432 55566666654
No 390
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=8.6e-17 Score=157.46 Aligned_cols=155 Identities=24% Similarity=0.305 Sum_probs=93.5
Q ss_pred CcCcCCCcEEEeecCcccccCCc------ccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhc
Q 004400 84 LANISTLVNLTVQYNQFSGELPE------ELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQ 157 (756)
Q Consensus 84 l~~l~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 157 (756)
+.....++.++++.|.++|.+|. .|..+++|++|+|++|++++ +| .+.++++|+.|+|++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34455666667777777666665 67777777777777777774 55 6777777777777777777 5666666
Q ss_pred CcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccCCCC-ccccCCCCCcEE
Q 004400 158 NWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITGELP-RYLGKMTKLKVL 236 (756)
Q Consensus 158 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L 236 (756)
.+++|+.|+|++|++++ +| .+..+++|+.| +|++|.+++..+ ..+..+++|++|
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L-----------------------~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVL-----------------------YMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE-----------------------EESEEECCCHHHHHHHTTTTTCSEE
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEE-----------------------ECCCCcCCchhHHHHHhcCCCCCEE
Confidence 66667777776666663 22 34444444443 333444443221 345666666666
Q ss_pred EccCCcCCCCCCcc----------CcCCCCCCeEEecCcccc
Q 004400 237 DLSFNRLRGQIPSN----------FDDLYDVDYIYFAGNLLT 268 (756)
Q Consensus 237 ~Ls~N~l~~~~p~~----------~~~l~~L~~L~ls~N~l~ 268 (756)
++++|.+++.+|.. +..+++|+.|+ +|.++
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 66666666554432 55556666554 44443
No 391
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=9.9e-15 Score=139.78 Aligned_cols=86 Identities=17% Similarity=0.270 Sum_probs=51.2
Q ss_pred CcCcCCCcEEEeecCcccccCCcccCCCC-CCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCC
Q 004400 84 LANISTLVNLTVQYNQFSGELPEELGSLL-NLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKL 162 (756)
Q Consensus 84 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 162 (756)
+.++.+|+.|+|++|+++ .+|. +..+. +|++|+|++|+|++. ..|..+++|+.|+|++|+|++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 455666677777777666 3333 33333 666666666666643 456666666666666666664444444566666
Q ss_pred cEEEccCCcCc
Q 004400 163 EKLFIQPSGLA 173 (756)
Q Consensus 163 ~~L~l~~N~l~ 173 (756)
++|+|++|+++
T Consensus 91 ~~L~L~~N~i~ 101 (176)
T 1a9n_A 91 TELILTNNSLV 101 (176)
T ss_dssp CEEECCSCCCC
T ss_pred CEEECCCCcCC
Confidence 66666655554
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.5e-14 Score=138.48 Aligned_cols=132 Identities=13% Similarity=0.132 Sum_probs=66.2
Q ss_pred cCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcE
Q 004400 37 LAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEK 116 (756)
Q Consensus 37 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 116 (756)
+.++++|+.|+|++|+++. +|...... ++|+.|+|++|.|++. ..|..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~-----------------------~~L~~L~Ls~N~l~~~--~~l~~l~~L~~ 68 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATL-----------------------DQFDAIDFSDNEIRKL--DGFPLLRRLKT 68 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGT-----------------------TCCSEEECCSSCCCEE--CCCCCCSSCCE
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcC-----------------------CCCCEEECCCCCCCcc--cccccCCCCCE
Confidence 5566777777777777762 23211111 2455555555555532 34455555555
Q ss_pred EeccCCeecccCCccccCCCCCCEEEeeCCcccccCCh--hhcCcCCCcEEEccCCcCcCCCCcc----ccCCCCCCeEE
Q 004400 117 LHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPS--FIQNWTKLEKLFIQPSGLAGPIPSG----IFSLENLTDLR 190 (756)
Q Consensus 117 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~----~~~l~~L~~L~ 190 (756)
|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|. .+.++++|+.|++++|.++ .+|.. +..+++|+.|+
T Consensus 69 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp EECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred EECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence 555555555333333345555555555555554 3333 4455555555555555554 23332 44555555555
Q ss_pred ccCCCC
Q 004400 191 ISDLNG 196 (756)
Q Consensus 191 l~~n~~ 196 (756)
+++|..
T Consensus 147 ~~~n~~ 152 (176)
T 1a9n_A 147 FQKVKL 152 (176)
T ss_dssp TEECCH
T ss_pred CCcCCH
Confidence 555443
No 393
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=2.1e-14 Score=152.25 Aligned_cols=214 Identities=12% Similarity=0.030 Sum_probs=162.8
Q ss_pred ceeccccccccCccc--ccCCcccCCCCCCCEEEccCCcccCccCccccc--------CCcce-eeccCccccccCCccC
Q 004400 16 KTVNQKRVLKEQNLT--GVLPPKLAELTFLQDIDLTLNYLSGTIPSQWAS--------LPLLN-ISLIANRLKGPIPKYL 84 (756)
Q Consensus 16 ~~~~~~l~L~~~~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~-l~l~~n~~~~~~p~~l 84 (756)
+..++.|+|++|++. ...+..+ +.+..+.+..|.| .+.+|.. ++.|+ +.+.+ ++...-+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 567999999999998 3333322 2245566666633 2355666 77774 66666 7776667788
Q ss_pred cCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeec----ccCCccc----------------------------
Q 004400 85 ANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFT----GELPKTF---------------------------- 132 (756)
Q Consensus 85 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~----~~~p~~~---------------------------- 132 (756)
.++++|+.|+|++|.+..+.+.+|.++.++..+.+..+... ......|
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 88888888888888887677777888777777776653210 0000000
Q ss_pred ----------------------cCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCC-eE
Q 004400 133 ----------------------AKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLT-DL 189 (756)
Q Consensus 133 ----------------------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~-~L 189 (756)
..+++|+.|+|++|+++...+.+|.+|++|++|+|.+| ++...+.+|.++++|+ .|
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 13789999999999999777889999999999999998 7767788999999999 99
Q ss_pred EccCCCCCCCCccccccc-cccEEEcccccccCCCCccccCCCCCcEEEc
Q 004400 190 RISDLNGPEATFPQLGNM-KMTKLILRNCNITGELPRYLGKMTKLKVLDL 238 (756)
Q Consensus 190 ~l~~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 238 (756)
++.+ ++..+....|... +|+.|+++.|.++.+.+.+|.++++|+.++.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9998 8888888888776 6999999999999888889999999999874
No 394
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.1e-13 Score=128.44 Aligned_cols=86 Identities=23% Similarity=0.291 Sum_probs=52.2
Q ss_pred CCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEc
Q 004400 88 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFI 167 (756)
Q Consensus 88 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 167 (756)
++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|+.|+|++|+|++..+..|.++++|+.|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45566666666666555556666666666666666666555555566666666666666666554555666666666666
Q ss_pred cCCcCc
Q 004400 168 QPSGLA 173 (756)
Q Consensus 168 ~~N~l~ 173 (756)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 666655
No 395
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=2.9e-13 Score=128.69 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=90.9
Q ss_pred CCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEcc
Q 004400 89 TLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQ 168 (756)
Q Consensus 89 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 168 (756)
..+.|++++|.|+ .+|..+. ++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|.++++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998 6777664 789999999999998888889999999999999999998777788999999999999
Q ss_pred CCcCcCCCCccccCCCCCCeEEccCCCCC
Q 004400 169 PSGLAGPIPSGIFSLENLTDLRISDLNGP 197 (756)
Q Consensus 169 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 197 (756)
+|+|++..+..|..+++|+.|+|++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99999766777888888888877776544
No 396
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=4.8e-13 Score=127.59 Aligned_cols=86 Identities=22% Similarity=0.325 Sum_probs=51.7
Q ss_pred CCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEc
Q 004400 88 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFI 167 (756)
Q Consensus 88 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 167 (756)
++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|+.|+|++|+|++..+..|.++++|+.|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45666666666666555556666666666666666666444444556666666666666666444444666666666666
Q ss_pred cCCcCc
Q 004400 168 QPSGLA 173 (756)
Q Consensus 168 ~~N~l~ 173 (756)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 666655
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=5.3e-13 Score=127.31 Aligned_cols=106 Identities=18% Similarity=0.238 Sum_probs=90.8
Q ss_pred CcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEccC
Q 004400 90 LVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQP 169 (756)
Q Consensus 90 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 169 (756)
-+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|.++++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999997 7787665 7899999999999988888999999999999999999977777789999999999999
Q ss_pred CcCcCCCCccccCCCCCCeEEccCCCCCC
Q 004400 170 SGLAGPIPSGIFSLENLTDLRISDLNGPE 198 (756)
Q Consensus 170 N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 198 (756)
|+|++..+..|..+++|+.|++++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99996666668888888888877766543
No 398
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.33 E-value=5.9e-12 Score=128.76 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=113.9
Q ss_pred hhcCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCC-CCceeeEeeEEEeCCeEEEEEE
Q 004400 414 ATNNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQ-HPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 414 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV~e 492 (756)
....|.....++.|+.+.||++... ++.+++|............+.+|+++++.+. +..+.++++++.+.+..|+|||
T Consensus 12 ~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e 90 (263)
T 3tm0_A 12 LIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMS 90 (263)
T ss_dssp HHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEE
T ss_pred HhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEE
Confidence 3456878888899999999999754 6889999986532223346889999999985 6778889999999999999999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcC----------------------------------------
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGE---------------------------------------- 532 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~---------------------------------------- 532 (756)
|++|.+|.+.+. +......++.+++++|+.||+.
T Consensus 91 ~i~G~~l~~~~~------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (263)
T 3tm0_A 91 EADGVLCSEEYE------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPF 164 (263)
T ss_dssp CCSSEEHHHHCC------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSS
T ss_pred ecCCeehhhccC------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccC
Confidence 999999977531 1223457889999999999981
Q ss_pred ----------------CCCCeEcCCCCCCceEecCCCCEEEccCCccc
Q 004400 533 ----------------SRIKVVHRDIKATNVLLDKDLNSKISDFGLAK 564 (756)
Q Consensus 533 ----------------g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~ 564 (756)
....++|+|++|.||+++++..+.|+||+.+.
T Consensus 165 ~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 165 KDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp SSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred CCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 11348999999999999876556799999875
No 399
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=1.2e-11 Score=132.01 Aligned_cols=102 Identities=16% Similarity=0.213 Sum_probs=70.5
Q ss_pred eeccCc-cccccCCccCcCcCCCcEEEeec-CcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCC
Q 004400 69 ISLIAN-RLKGPIPKYLANISTLVNLTVQY-NQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDN 146 (756)
Q Consensus 69 l~l~~n-~~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 146 (756)
++..++ ++. .+|. |..+++|+.|+|++ |+|++..+..|++|++|+.|+|++|+|++..|..|.+|++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 444444 343 4666 77777777777775 7777666677777777777777777777777777777777777777777
Q ss_pred cccccCChhhcCcCCCcEEEccCCcCc
Q 004400 147 QFTGQIPSFIQNWTKLEKLFIQPSGLA 173 (756)
Q Consensus 147 ~l~~~~p~~~~~l~~L~~L~l~~N~l~ 173 (756)
+|++..+..|..++ |+.|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 77765555555555 777777777765
No 400
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=1.5e-11 Score=131.26 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=89.3
Q ss_pred cEEEeecC-cccccCCcccCCCCCCcEEeccC-CeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEcc
Q 004400 91 VNLTVQYN-QFSGELPEELGSLLNLEKLHLSS-NNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQ 168 (756)
Q Consensus 91 ~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 168 (756)
..++++++ +|+ .+|. |..+++|+.|+|++ |+|++..+..|.+|++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788888 898 5888 99999999999996 99998888889999999999999999999899999999999999999
Q ss_pred CCcCcCCCCccccCCCCCCeEEccCCCCCC
Q 004400 169 PSGLAGPIPSGIFSLENLTDLRISDLNGPE 198 (756)
Q Consensus 169 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 198 (756)
+|+|++..+..+..++ |+.|+|.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999965555555554 8888888776654
No 401
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=2.2e-13 Score=146.40 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=67.0
Q ss_pred CCCcEEEeecCcccccCCcccC-CCCCCcEEeccCCeecccCCccc-----cCCCCCCEEEeeCCcccc----cCChhhc
Q 004400 88 STLVNLTVQYNQFSGELPEELG-SLLNLEKLHLSSNNFTGELPKTF-----AKLTNMKDFRISDNQFTG----QIPSFIQ 157 (756)
Q Consensus 88 ~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~----~~p~~~~ 157 (756)
++|++|+|++|.|+......+. .+.+|+.|+|++|+|+......+ ...++|++|+|++|.|+. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3445555555544422222221 23345555555555442222222 123445555555555442 1223334
Q ss_pred CcCCCcEEEccCCcCcCC----CCccccCCCCCCeEEccCCCCCCCCccccc-----cccccEEEcccccccCCCCcccc
Q 004400 158 NWTKLEKLFIQPSGLAGP----IPSGIFSLENLTDLRISDLNGPEATFPQLG-----NMKMTKLILRNCNITGELPRYLG 228 (756)
Q Consensus 158 ~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~~L~~L~L~~n~l~~~~p~~~~ 228 (756)
.+++|++|+|++|.++.. ++..+...++|+.|+|++|.+.......+. +.+|+.|+|++|.|+......+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 445555555555555421 233344445555555555555443222221 12466666666666544433443
Q ss_pred CC---C--CCcEEE--ccCCcCC
Q 004400 229 KM---T--KLKVLD--LSFNRLR 244 (756)
Q Consensus 229 ~l---~--~L~~L~--Ls~N~l~ 244 (756)
.+ . .|+.+. +..|.++
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HCC------CEEECCCC----CH
T ss_pred HHhcCCCccchhhHhhhcCCccC
Confidence 32 1 166666 6666554
No 402
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.21 E-value=1.5e-11 Score=125.39 Aligned_cols=136 Identities=16% Similarity=0.110 Sum_probs=102.0
Q ss_pred CccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCc--eeeEeeEEEeCCeEEEEEEec
Q 004400 417 NFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPN--LVKLYGCCIEGNQLLLIYEYL 494 (756)
Q Consensus 417 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lV~e~~ 494 (756)
++......+.|..+.||++...+|+.+++|..... ....+.+|+.+++.+.+.+ +.+++++...++..++||||+
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i 97 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEV 97 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECC
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEec
Confidence 44443344456679999998877888999997643 2245788999999986545 455888888888899999999
Q ss_pred CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCC-----------------------------------------
Q 004400 495 ENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGES----------------------------------------- 533 (756)
Q Consensus 495 ~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g----------------------------------------- 533 (756)
+|.++. .. ..+ ...++.++++.|+.||+..
T Consensus 98 ~G~~l~--~~----~~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (264)
T 1nd4_A 98 PGQDLL--SS----HLA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPA 168 (264)
T ss_dssp SSEETT--TS----CCC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHH
T ss_pred CCcccC--cC----cCC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHH
Confidence 998873 11 112 2367788888888888742
Q ss_pred --------------CCCeEcCCCCCCceEecCCCCEEEccCCccc
Q 004400 534 --------------RIKVVHRDIKATNVLLDKDLNSKISDFGLAK 564 (756)
Q Consensus 534 --------------~~~iiH~Dikp~Nill~~~~~~kl~DFGla~ 564 (756)
+..++|||++|.||+++++..+.|+|||.+.
T Consensus 169 ~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 169 ELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp HHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred HHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1129999999999999887667799999875
No 403
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.19 E-value=3.1e-10 Score=123.32 Aligned_cols=244 Identities=12% Similarity=0.075 Sum_probs=132.4
Q ss_pred eeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccc-------------
Q 004400 12 FWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKG------------- 78 (756)
Q Consensus 12 ~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~------------- 78 (756)
.|.+|+.|+++.|.. +++.+-..+|.++++|+.++|.++ ++..-..+|..+..|+.....+++..
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 478999999999974 587777788999999999999765 55444566776666643332222222
Q ss_pred ---------cCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCccc
Q 004400 79 ---------PIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFT 149 (756)
Q Consensus 79 ---------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 149 (756)
.-..+|.++++|+.+.+.++... ....+|.++.+|+.+.+..| ++.+....|.++..|+.+.+.++...
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred cccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence 22345666777777777655433 55566777777777777665 33344445666666666555544322
Q ss_pred ccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCcccccc----------------------c
Q 004400 150 GQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGN----------------------M 207 (756)
Q Consensus 150 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----------------------~ 207 (756)
+.+.+....+|+.+.+..+ ++......+..+.+|+.+.+..+.. ......+.. .
T Consensus 222 --i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~ 297 (394)
T 4fs7_A 222 --LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCS 297 (394)
T ss_dssp --ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECTTTTTTCT
T ss_pred --eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeeccccccccc
Confidence 1222223344444444322 1212334455556666665554322 111111211 2
Q ss_pred cccEEEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCc
Q 004400 208 KMTKLILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGN 265 (756)
Q Consensus 208 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 265 (756)
+|+.+.+.++ ++.+...+|.++++|+.++|.++ ++.+...+|.++.+|+.+.+..|
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 3445554433 33333444555555555555433 44344445555555555555444
No 404
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=4.5e-13 Score=144.01 Aligned_cols=180 Identities=14% Similarity=0.148 Sum_probs=123.8
Q ss_pred CCCCEEEccCCcccCccCcccccC-----Ccc-eeeccCccccccCCccCc-CcCCCcEEEeecCcccccCCccc-----
Q 004400 41 TFLQDIDLTLNYLSGTIPSQWASL-----PLL-NISLIANRLKGPIPKYLA-NISTLVNLTVQYNQFSGELPEEL----- 108 (756)
Q Consensus 41 ~~L~~L~L~~n~l~~~~p~~~~~l-----~~L-~l~l~~n~~~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~----- 108 (756)
+.|+.|+|++|.|+......+... +.| .|+|.+|++.......+. .+++|+.|+|++|.|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 567888888888875444433322 456 588888887655444443 46788999999999875544444
Q ss_pred CCCCCCcEEeccCCeecc----cCCccccCCCCCCEEEeeCCccccc----CChhhcCcCCCcEEEccCCcCcCC----C
Q 004400 109 GSLLNLEKLHLSSNNFTG----ELPKTFAKLTNMKDFRISDNQFTGQ----IPSFIQNWTKLEKLFIQPSGLAGP----I 176 (756)
Q Consensus 109 ~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~ 176 (756)
...++|++|+|++|+|+. .++..+..+++|++|+|++|+|+.. ++..+..+++|++|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 356789999999999874 2444557788999999999998843 356677788999999999999753 3
Q ss_pred CccccCCCCCCeEEccCCCCCCCCccccccc---c---ccEEE--ccccccc
Q 004400 177 PSGIFSLENLTDLRISDLNGPEATFPQLGNM---K---MTKLI--LRNCNIT 220 (756)
Q Consensus 177 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~---L~~L~--L~~n~l~ 220 (756)
+..+...++|++|+|++|.+.......+... . ++.+. +..|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 4455567899999999998887555443322 1 55555 5555554
No 405
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.04 E-value=1e-08 Score=111.27 Aligned_cols=265 Identities=12% Similarity=0.075 Sum_probs=167.3
Q ss_pred eccc-eeccccccccCcccccCCcccCCCCCCCEEEccCCc---ccCccCcccccCCcceeeccCccccccCCccCcCcC
Q 004400 13 WKQK-TVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNY---LSGTIPSQWASLPLLNISLIANRLKGPIPKYLANIS 88 (756)
Q Consensus 13 ~~~~-~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~ 88 (756)
|.++ ..++.+.|.+ +++.+-..+|.++++|+.+.+..|. ++..-..+|.....|+-....+++...-..+|.++.
T Consensus 59 F~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCE 137 (394)
T ss_dssp TTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCT
T ss_pred ccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhc
Confidence 6666 4588888875 4777777889999999999998774 664455678888888655455667766777899999
Q ss_pred CCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcccccCChhhcCcCCCcEEEcc
Q 004400 89 TLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQ 168 (756)
Q Consensus 89 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 168 (756)
+|+.+.+..+- ..+...+|..+.+|+.+.+..+ ++.+-...|. ..+|+.+.+..+-.. ....+|.++.+|......
T Consensus 138 ~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 138 ELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSD 213 (394)
T ss_dssp TCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEEC
T ss_pred cccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceeccc
Confidence 99999997654 3366678888999999998766 4424444454 356888877665433 455666666666665544
Q ss_pred CCcCc------------------------------------CCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccE
Q 004400 169 PSGLA------------------------------------GPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTK 211 (756)
Q Consensus 169 ~N~l~------------------------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~ 211 (756)
.+... .....+|.++.+|+.+.+.++ ........|... .|+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~ 292 (394)
T 4gt6_A 214 SESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQD 292 (394)
T ss_dssp CSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCccccccccccc
Confidence 33221 112334556666666666543 223333333332 4666
Q ss_pred EEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCc-hh--hcCCCeeEeecC
Q 004400 212 LILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPP-WM--LERGDKIDLSYN 287 (756)
Q Consensus 212 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~--~~~l~~l~ls~N 287 (756)
+.+. +.++.....+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++ .+.. .+ ..+|+.+++.+|
T Consensus 293 i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 293 IEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred ccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence 6664 3444455556777777777777654 44455566777777777777544 44 2332 22 345666666554
No 406
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=99.03 E-value=4.5e-10 Score=120.35 Aligned_cols=142 Identities=17% Similarity=0.263 Sum_probs=107.0
Q ss_pred ccCcccCCCCccEEEeeccCCcEEEEEEcc--ccC-cccHHHHHHHHHHHHhCC--CCceeeEeeEEEeC---CeEEEEE
Q 004400 420 TDNNIGEGGFGPVYKGLLADGTAIAVKQLS--SKS-KQGNREFINEIGMISALQ--HPNLVKLYGCCIEG---NQLLLIY 491 (756)
Q Consensus 420 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~--~~~-~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~~~~lV~ 491 (756)
..+.++.|.++.||+....+ ..+++|+.. ... ......+.+|+.+++.+. +..+.+++.++.+. +..++||
T Consensus 42 ~~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm 120 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM 120 (359)
T ss_dssp EEEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred eEEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence 45678999999999988764 578888775 321 123356788999999997 45578888888776 4589999
Q ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCC--------------------------------------
Q 004400 492 EYLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGES-------------------------------------- 533 (756)
Q Consensus 492 e~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g-------------------------------------- 533 (756)
||++|..+.+. ....++...+..++.++++.|+.||...
T Consensus 121 e~v~G~~l~~~---~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (359)
T 3dxp_A 121 EFVSGRVLWDQ---SLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAM 197 (359)
T ss_dssp ECCCCBCCCCT---TCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHH
T ss_pred EecCCeecCCC---ccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHH
Confidence 99999876431 1234678888999999999999999731
Q ss_pred -----------------CCCeEcCCCCCCceEecCCCC--EEEccCCcccc
Q 004400 534 -----------------RIKVVHRDIKATNVLLDKDLN--SKISDFGLAKL 565 (756)
Q Consensus 534 -----------------~~~iiH~Dikp~Nill~~~~~--~kl~DFGla~~ 565 (756)
...++|||+++.||+++.++. +.|+||+.+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 198 DSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 246899999999999997753 68999999874
No 407
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.00 E-value=5.6e-09 Score=113.32 Aligned_cols=249 Identities=10% Similarity=0.092 Sum_probs=179.1
Q ss_pred eeccceeccccccccCc---ccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcC
Q 004400 12 FWKQKTVNQKRVLKEQN---LTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANIS 88 (756)
Q Consensus 12 ~~~~~~~~~~l~L~~~~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~ 88 (756)
.|.+|+.|+.+.+..|. ++..-..+|..+..|+.+.+..+ ++..-..+|.....|+.....+.+.......|.++.
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCY 160 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCT
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccceeeeecccceeccc
Confidence 48999999999988764 66566678888888888887665 443555677777777644344556656667788888
Q ss_pred CCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCC----------------------
Q 004400 89 TLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDN---------------------- 146 (756)
Q Consensus 89 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N---------------------- 146 (756)
.|+.+.+..+ ++.+...+|.. .+|+.+.+..+-.. .....|..+.+|+......+
T Consensus 161 ~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T 4gt6_A 161 SLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIR 237 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEE
T ss_pred ccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeecccccccccccc
Confidence 8888888765 44344455543 56777777655433 44445555555555443322
Q ss_pred --------------cccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccE
Q 004400 147 --------------QFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTK 211 (756)
Q Consensus 147 --------------~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~ 211 (756)
.++.....+|.++..|+.+.+..+... ....+|.++++|+.+.+.. .+..+....|... +|+.
T Consensus 238 ~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~ 315 (394)
T 4gt6_A 238 YPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKS 315 (394)
T ss_dssp CCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCE
T ss_pred cccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCE
Confidence 222233467888999999999876554 5677888999999999974 6677777777764 6999
Q ss_pred EEcccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCcccc
Q 004400 212 LILRNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLT 268 (756)
Q Consensus 212 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 268 (756)
+.|.++ ++.+...+|.++++|+.+.|..+ ++.+...+|.++.+|+.+++.+|...
T Consensus 316 i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 316 IDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred EEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 999865 66566788999999999999765 66566788999999999999988653
No 408
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=99.00 E-value=2.2e-10 Score=119.82 Aligned_cols=185 Identities=16% Similarity=0.201 Sum_probs=123.7
Q ss_pred cCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCC-CCc--eeeEeeEEEeCC---eEEEEEEec
Q 004400 421 DNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQ-HPN--LVKLYGCCIEGN---QLLLIYEYL 494 (756)
Q Consensus 421 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lV~e~~ 494 (756)
.+.++.|....||+.. ..+++|+.... .....+.+|+++++.+. +.. +.+++......+ ..|+||+|+
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4568999999999874 46888986432 33467889999998884 333 334444433333 348899999
Q ss_pred CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcC------------------------------------------
Q 004400 495 ENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGE------------------------------------------ 532 (756)
Q Consensus 495 ~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~------------------------------------------ 532 (756)
+|.++.+... ..++..++..++.++++.++.||+.
T Consensus 99 ~G~~l~~~~~---~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (304)
T 3sg8_A 99 KGVPLTPLLL---NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDD 175 (304)
T ss_dssp CCEECCHHHH---HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCeECCcccc---ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHH
Confidence 9988865432 2467778888899999999999861
Q ss_pred -------------CCCCeEcCCCCCCceEecC--CCCEEEccCCccccCcccCcceee--------------ccccCccC
Q 004400 533 -------------SRIKVVHRDIKATNVLLDK--DLNSKISDFGLAKLDEEENTHIST--------------RVAGTIGY 583 (756)
Q Consensus 533 -------------g~~~iiH~Dikp~Nill~~--~~~~kl~DFGla~~~~~~~~~~~~--------------~~~gt~~y 583 (756)
..+.++|+|++|.||++++ +..+.|+||+.+...+.. ..... .+....+.
T Consensus 176 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~-~Dl~~~~~~~~~~~~~~~~~~l~~Y~~ 254 (304)
T 3sg8_A 176 FYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPD-NDFISLMEDDEEYGMEFVSKILNHYKH 254 (304)
T ss_dssp HHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTT-HHHHTTCCTTTSCCHHHHHHHHHHHTC
T ss_pred HHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChH-HHHHHHHhhccccCHHHHHHHHHHcCC
Confidence 1235799999999999998 455789999998753321 11000 00011112
Q ss_pred Cc-hHhhhcCCCCcccchhhHHHHHHHHHhCCCCC
Q 004400 584 MA-PEYAMRGHLTEKADVYSFGIVALEIVSGRSNV 617 (756)
Q Consensus 584 ~a-PE~~~~~~~~~~~Dv~slGv~l~elltg~~p~ 617 (756)
.. |+..... ....+.|+++.++|.+.+|..+|
T Consensus 255 ~~~~~~~~r~--~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 255 KDIPTVLEKY--RMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp SCHHHHHHHH--HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHH--HHHHHHHHHHHHHHHHHcCCHHH
Confidence 22 3322211 12358999999999999998776
No 409
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.98 E-value=5.8e-09 Score=113.16 Aligned_cols=179 Identities=13% Similarity=0.127 Sum_probs=117.7
Q ss_pred cCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCee---------------------cccCCccccCCCC
Q 004400 79 PIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNF---------------------TGELPKTFAKLTN 137 (756)
Q Consensus 79 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l---------------------~~~~p~~~~~l~~ 137 (756)
.-...|.++.+|+.+++..| ++.+...+|.++..|+.+.+..+.. +..-...|..+.+
T Consensus 176 I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~ 254 (394)
T 4fs7_A 176 LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTD 254 (394)
T ss_dssp ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSS
T ss_pred eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceeccccccccccc
Confidence 33344555555555555444 3323334444444444444443322 2123344556666
Q ss_pred CCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEccc
Q 004400 138 MKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILRN 216 (756)
Q Consensus 138 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~~ 216 (756)
|+.+.+..+... .....|.++..|+.+.+..+.+ ....|..+.+|+.+.+.++ +..+....|... +|+.+.|.+
T Consensus 255 l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 255 LESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp CCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred ceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence 777777666544 5556667777777766665433 2446778899999998764 666766777664 699999975
Q ss_pred ccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCc
Q 004400 217 CNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGN 265 (756)
Q Consensus 217 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 265 (756)
+ ++.+...+|.++++|+.++|..| ++.....+|.++.+|+.+++..|
T Consensus 330 ~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 330 L-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred c-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 5 76666788999999999999887 77677789999999999998755
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=2.8e-10 Score=121.14 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=47.8
Q ss_pred cccEEEcccccccCCCCcccc---CCCCCcEEEccCCcCCCC----CCccCcCCCCCCeEEecCccccccCCchhhc-CC
Q 004400 208 KMTKLILRNCNITGELPRYLG---KMTKLKVLDLSFNRLRGQ----IPSNFDDLYDVDYIYFAGNLLTGAIPPWMLE-RG 279 (756)
Q Consensus 208 ~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~-~l 279 (756)
+|+.|.|.+|.+.+..+..+. .+++|+.|+|+.|.+.+. ++..+..+++|+.|+|++|.++...-..+.. ..
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg 332 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLP 332 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCC
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcC
Confidence 466666666666543332332 467788888888887753 2333455678888888888776433222222 23
Q ss_pred CeeEeecCC
Q 004400 280 DKIDLSYNN 288 (756)
Q Consensus 280 ~~l~ls~N~ 288 (756)
..+++++|+
T Consensus 333 ~~~~~~~~~ 341 (362)
T 2ra8_A 333 MKIDVSDSQ 341 (362)
T ss_dssp SEEECCSBC
T ss_pred CEEEecCCc
Confidence 556776665
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=7.4e-10 Score=117.91 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=83.0
Q ss_pred ccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCcccc--CCCCCCEEEeeC--Cccccc-----C
Q 004400 82 KYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFA--KLTNMKDFRISD--NQFTGQ-----I 152 (756)
Q Consensus 82 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~-----~ 152 (756)
..+..+++|+.|+|++|.-. .++. +. +++|+.|+|..|.++......++ .+++|+.|+|+. |...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44455667777777666211 1222 32 66677777776666533333333 566777777653 221111 1
Q ss_pred Chhh--cCcCCCcEEEccCCcCcCCCCcccc---CCCCCCeEEccCCCCCCCCccccc-----cccccEEEcccccccCC
Q 004400 153 PSFI--QNWTKLEKLFIQPSGLAGPIPSGIF---SLENLTDLRISDLNGPEATFPQLG-----NMKMTKLILRNCNITGE 222 (756)
Q Consensus 153 p~~~--~~l~~L~~L~l~~N~l~~~~p~~~~---~l~~L~~L~l~~n~~~~~~~~~~~-----~~~L~~L~L~~n~l~~~ 222 (756)
...+ ..+++|+.|+|.+|.+....+..+. .+++|+.|+|+.|.+.......+. ..+|+.|+|++|.++..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1122 2356777777777766543222222 366777777777766654322211 12477777777777644
Q ss_pred CCccccC-CCCCcEEEccCCc
Q 004400 223 LPRYLGK-MTKLKVLDLSFNR 242 (756)
Q Consensus 223 ~p~~~~~-l~~L~~L~Ls~N~ 242 (756)
.-..+.. + ...+++++|+
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 3333433 2 3567888776
No 412
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.70 E-value=3.6e-07 Score=98.38 Aligned_cols=263 Identities=10% Similarity=0.043 Sum_probs=166.1
Q ss_pred eeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcCCCc
Q 004400 12 FWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLV 91 (756)
Q Consensus 12 ~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~ 91 (756)
++.....++++.+.. +++.+-..+|.++++|+.++|..+ ++.+-..+|...+.+++.+. +++...-..+|.+ .+|+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~-~~l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGM-ERVKKFGDYVFQG-TDLD 116 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEEC-TTCCEECTTTTTT-CCCS
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECC-ceeeEeccceecc-CCcc
Confidence 456677788888864 577677788999999999999754 66556677887765555554 3455444556665 4788
Q ss_pred EEEeecCcccccCCcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCcc-----------------------
Q 004400 92 NLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQF----------------------- 148 (756)
Q Consensus 92 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l----------------------- 148 (756)
.+.+..+-.. ....+|.+. +|+.+.+..+ ++..-...|..+.+|+.+.+..+..
T Consensus 117 ~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 8888765332 333444443 4555554433 2223334444555555544433221
Q ss_pred ------------cccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEcc
Q 004400 149 ------------TGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLILR 215 (756)
Q Consensus 149 ------------~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L~ 215 (756)
.......+..+.+|+.+.+..+ +......++..+.+|+.+.+..+ ++.+....+... +|+.+.+.
T Consensus 194 ~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence 1123345566677777777654 33355667778888888888764 555555555554 57788876
Q ss_pred cccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCCchh--hcCCCeeEee
Q 004400 216 NCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIPPWM--LERGDKIDLS 285 (756)
Q Consensus 216 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~l~~l~ls 285 (756)
.+ +.......|.++++|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++..-..++ ..+|+.+.+.
T Consensus 272 ~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 272 AK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 54 55455667888888999988888888667778888888988888655 442222333 3456666654
No 413
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.56 E-value=1.7e-07 Score=98.35 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=102.2
Q ss_pred CccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCC---C-ceeeEeeEEEeCCeEEEEEE
Q 004400 417 NFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQH---P-NLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 417 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h---~-niv~l~~~~~~~~~~~lV~e 492 (756)
.....+.++.|....||+. |+.+++|+.... .....+.+|.++++.+.+ + .+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 4455678999999999988 677889986432 223568899999998876 1 23444444 56689999
Q ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCC--------------------------------------
Q 004400 493 YLENNSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESR-------------------------------------- 534 (756)
Q Consensus 493 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~-------------------------------------- 534 (756)
|++|.++.+... ..++..++..++.++++.++.||+...
T Consensus 108 ~i~G~~l~~~~~---~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (320)
T 3r70_A 108 YIKGERITYEQY---HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDE 184 (320)
T ss_dssp CCCCBCCCHHHH---TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred ecCCcccccccc---ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccccc
Confidence 999998864332 245677778888888888888885421
Q ss_pred ----------------------CCeEcCCCCCCceEecCCCCEEEccCCccccC
Q 004400 535 ----------------------IKVVHRDIKATNVLLDKDLNSKISDFGLAKLD 566 (756)
Q Consensus 535 ----------------------~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~ 566 (756)
+.++|+|++|.||+++.+..+.|+||+.+...
T Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~ 238 (320)
T 3r70_A 185 MLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVG 238 (320)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEE
T ss_pred chHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccC
Confidence 23599999999999998666799999998753
No 414
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.54 E-value=1.2e-06 Score=94.25 Aligned_cols=243 Identities=14% Similarity=0.062 Sum_probs=157.5
Q ss_pred eeccceeccccccccCcccccCCcccCCCCCCCEEEccCCcccCccCcccccCCcceeeccCccccccCCccCcCcCCCc
Q 004400 12 FWKQKTVNQKRVLKEQNLTGVLPPKLAELTFLQDIDLTLNYLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLV 91 (756)
Q Consensus 12 ~~~~~~~~~~l~L~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~ 91 (756)
.|.+|..|+.+.|.. +++.+-..+|.+. .|+.+.+..+ ++..-..+|.....-.+.+.. ++...-...|.+. +|+
T Consensus 64 aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp~-~~~~i~~~~F~~~-~l~ 138 (379)
T 4h09_A 64 NFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFPG-ATTEIGNYIFYNS-SVK 138 (379)
T ss_dssp TTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEECCT-TCCEECTTTTTTC-CCC
T ss_pred HhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccCCC-ccccccccccccc-eee
Confidence 589999999999975 4776666777775 5777766543 442333444443211233322 2222222333332 344
Q ss_pred EEEeecCcccccCCcccCCCCCCcEEec------------------------------------cCCeecccCCccccCC
Q 004400 92 NLTVQYNQFSGELPEELGSLLNLEKLHL------------------------------------SSNNFTGELPKTFAKL 135 (756)
Q Consensus 92 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L------------------------------------~~N~l~~~~p~~~~~l 135 (756)
.+.+..+ ++......|..+.+|+.+.+ ..+.-. .....+...
T Consensus 139 ~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~ 216 (379)
T 4h09_A 139 RIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYG 216 (379)
T ss_dssp EEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTC
T ss_pred eeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-Eeecccccc
Confidence 4444332 22233334444444444433 322221 334456677
Q ss_pred CCCCEEEeeCCcccccCChhhcCcCCCcEEEccCCcCcCCCCccccCCCCCCeEEccCCCCCCCCccccccc-cccEEEc
Q 004400 136 TNMKDFRISDNQFTGQIPSFIQNWTKLEKLFIQPSGLAGPIPSGIFSLENLTDLRISDLNGPEATFPQLGNM-KMTKLIL 214 (756)
Q Consensus 136 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~L 214 (756)
.+|+.+.+..+ ++.....+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+.. .+.......|... +|+.+.+
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccc
Confidence 88999998766 44466778899999999999876 6556677888899999999875 4666666666554 6999999
Q ss_pred ccccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCc
Q 004400 215 RNCNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGN 265 (756)
Q Consensus 215 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 265 (756)
.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 999888777788999999999999865 66566788999999999988654
No 415
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.54 E-value=3.1e-07 Score=94.61 Aligned_cols=141 Identities=21% Similarity=0.210 Sum_probs=94.2
Q ss_pred ccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCC---ceeeEeeEEEeCCeEEEEEEec
Q 004400 418 FATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHP---NLVKLYGCCIEGNQLLLIYEYL 494 (756)
Q Consensus 418 ~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lV~e~~ 494 (756)
....+.|+.|.++.||+++..+|+.++||+...........|.+|++.|+.+++. .+.+++++. ..++||||+
T Consensus 17 ~~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l 92 (288)
T 3d1u_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWV 92 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECC
T ss_pred ccceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEec
Confidence 3456789999999999999888999999997543333346789999999999875 467777763 368999999
Q ss_pred CCCCHH--------HH---HHhcCCC--------------------CCHHHHH---H-----------------HHHHHH
Q 004400 495 ENNSLA--------RA---LFEHRLK--------------------LDWPTRR---R-----------------ICLGIA 523 (756)
Q Consensus 495 ~~gsL~--------~~---l~~~~~~--------------------l~~~~~~---~-----------------i~~~ia 523 (756)
+++.+. +. |+..... -+|.... + ....+-
T Consensus 93 ~g~~~~~~~~~~lg~~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~~~~~~~~~~~~~~~ 172 (288)
T 3d1u_A 93 DERPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVRLVE 172 (288)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTSSCHHHHHHHH
T ss_pred ccCCCChHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 998642 22 2221100 1333211 0 011111
Q ss_pred HHHHHHH----cCCCCCeEcCCCCCCceEecCCCCEEEccCCccc
Q 004400 524 RGLAYLH----GESRIKVVHRDIKATNVLLDKDLNSKISDFGLAK 564 (756)
Q Consensus 524 ~~L~~LH----~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~ 564 (756)
+.++.+. ....+.++|+|+.+.||+++.+ .+.|.|| .+.
T Consensus 173 ~l~~~l~~~l~~~~~~~l~HgD~~~~N~l~~~~-~~~~iD~-~~~ 215 (288)
T 3d1u_A 173 KVLDALDHLAGDPEPPARIHGDLWNGNVLWQDD-GAVVIDP-AAH 215 (288)
T ss_dssp HHHHTHHHHTCSCCCCEEECSCCSGGGEEEETT-EEEECSC-CCE
T ss_pred HHHHHHHHHhcCCCCCcceECCCCcCcEEEeCC-CeEEEcC-CcC
Confidence 2222232 2335679999999999999984 5889999 654
No 416
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.52 E-value=2e-07 Score=99.45 Aligned_cols=144 Identities=13% Similarity=0.148 Sum_probs=91.6
Q ss_pred ccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCc--eeeEeeEEEeC-CeEEEEEEec
Q 004400 418 FATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPN--LVKLYGCCIEG-NQLLLIYEYL 494 (756)
Q Consensus 418 ~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~-~~~~lV~e~~ 494 (756)
....+.++.|....+|+... +++.+++|..... ..+.+|+.+++.+.... +.+++.++.+. +..++||||+
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l 116 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRA 116 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECC
T ss_pred CceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEec
Confidence 34456789999999999875 5788999987432 35888999999986544 45677777664 6789999999
Q ss_pred CCCCHHH---------------HH---HhcCC----C------------CCHHHH---------------------HHHH
Q 004400 495 ENNSLAR---------------AL---FEHRL----K------------LDWPTR---------------------RRIC 519 (756)
Q Consensus 495 ~~gsL~~---------------~l---~~~~~----~------------l~~~~~---------------------~~i~ 519 (756)
+|.++.+ .+ +.... . -+|... ....
T Consensus 117 ~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (362)
T 3ovc_A 117 QGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVA 196 (362)
T ss_dssp CSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 9865431 11 11100 0 001111 0111
Q ss_pred HHHHHHHHHHHcC-CCCCeEcCCCCCCceEecCCCCEEEccCCccccCc
Q 004400 520 LGIARGLAYLHGE-SRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDE 567 (756)
Q Consensus 520 ~~ia~~L~~LH~~-g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~ 567 (756)
..+...++++... ..+.++|+|+++.||+++++..+.|+||+.+...+
T Consensus 197 ~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~gd 245 (362)
T 3ovc_A 197 QALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFGD 245 (362)
T ss_dssp HHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEEC
T ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccCC
Confidence 1122222233211 11457999999999999877778899999987543
No 417
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=1.6e-08 Score=102.03 Aligned_cols=104 Identities=22% Similarity=0.273 Sum_probs=74.1
Q ss_pred CcCcCCCcE--EEeecCcccccCCc----ccCCCCCCcEEeccCCeecc--cCCccccCCCCCCEEEeeCCcccccCChh
Q 004400 84 LANISTLVN--LTVQYNQFSGELPE----ELGSLLNLEKLHLSSNNFTG--ELPKTFAKLTNMKDFRISDNQFTGQIPSF 155 (756)
Q Consensus 84 l~~l~~L~~--L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 155 (756)
|...+.|+. ++++.|... .++. ...++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence 444555555 677777543 2322 23567889999999999887 4556777889999999999998854 33
Q ss_pred hcCcC--CCcEEEccCCcCcCCCCc-------cccCCCCCCeEE
Q 004400 156 IQNWT--KLEKLFIQPSGLAGPIPS-------GIFSLENLTDLR 190 (756)
Q Consensus 156 ~~~l~--~L~~L~l~~N~l~~~~p~-------~~~~l~~L~~L~ 190 (756)
+..+. +|++|+|++|.+.+..|. .+..+++|+.||
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 45555 889999999998876653 356788888876
No 418
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=2.9e-08 Score=95.24 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=76.5
Q ss_pred CCccCcCcCCCcEEEeecC-ccccc----CCcccCCCCCCcEEeccCCeeccc----CCccccCCCCCCEEEeeCCcccc
Q 004400 80 IPKYLANISTLVNLTVQYN-QFSGE----LPEELGSLLNLEKLHLSSNNFTGE----LPKTFAKLTNMKDFRISDNQFTG 150 (756)
Q Consensus 80 ~p~~l~~l~~L~~L~L~~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~ 150 (756)
+...+...++|++|+|++| .|... +...+...++|++|+|++|+|... +...+...++|++|+|++|+|..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445666778888888888 77632 334566677888888888887632 33445556778888888888774
Q ss_pred c----CChhhcCcCCCcEEEc--cCCcCcCC----CCccccCCCCCCeEEccCCCC
Q 004400 151 Q----IPSFIQNWTKLEKLFI--QPSGLAGP----IPSGIFSLENLTDLRISDLNG 196 (756)
Q Consensus 151 ~----~p~~~~~l~~L~~L~l--~~N~l~~~----~p~~~~~l~~L~~L~l~~n~~ 196 (756)
. +...+...++|++|+| ++|.+... +...+...++|++|++++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3 3455666677888888 67777643 233344456666666666544
No 419
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=1.9e-08 Score=96.55 Aligned_cols=123 Identities=16% Similarity=0.163 Sum_probs=81.7
Q ss_pred cCCcccCCCCCCCEEEccCC-cccCccCcccccCCcceeeccCccccccCCccCcCcCCCcEEEeecCccccc----CCc
Q 004400 32 VLPPKLAELTFLQDIDLTLN-YLSGTIPSQWASLPLLNISLIANRLKGPIPKYLANISTLVNLTVQYNQFSGE----LPE 106 (756)
Q Consensus 32 ~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~l~l~~n~~~~~~p~~l~~l~~L~~L~L~~N~l~~~----~p~ 106 (756)
.+...+...+.|+.|+|++| .|...-.. .+...+...++|++|+|++|.|... +..
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~-------------------~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~ 87 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLK-------------------ACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHH-------------------HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHH-------------------HHHHHHHhCCCcCEEECcCCCCChHHHHHHHH
Confidence 44455677788888888888 77621111 1223344556788888888887642 234
Q ss_pred ccCCCCCCcEEeccCCeeccc----CCccccCCCCCCEEEe--eCCccccc----CChhhcCcCCCcEEEccCCcCc
Q 004400 107 ELGSLLNLEKLHLSSNNFTGE----LPKTFAKLTNMKDFRI--SDNQFTGQ----IPSFIQNWTKLEKLFIQPSGLA 173 (756)
Q Consensus 107 ~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 173 (756)
.+...++|++|+|++|.|+.. +...+...++|++|+| ++|.|... +...+...++|++|+|++|.+.
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 455567788888888887742 3455666778888888 77888743 3345555688888888888775
No 420
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.42 E-value=1.3e-06 Score=90.97 Aligned_cols=136 Identities=19% Similarity=0.181 Sum_probs=96.0
Q ss_pred cCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCC---ceeeEeeEEE-eCCeEEEEEEecCC
Q 004400 421 DNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHP---NLVKLYGCCI-EGNQLLLIYEYLEN 496 (756)
Q Consensus 421 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~~~lV~e~~~~ 496 (756)
.+.++.|....||+. |+.+++|+... ......+.+|+++|+.+.+. .+.+++.++. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 356788888899987 56788888532 23346788999999999753 3556666664 34567899999999
Q ss_pred CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcC--------------------------------------------
Q 004400 497 NSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGE-------------------------------------------- 532 (756)
Q Consensus 497 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~-------------------------------------------- 532 (756)
..+.+... ..++...+..++.++++.|+.||+.
T Consensus 98 ~~l~~~~~---~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 174 (306)
T 3tdw_A 98 QILGEDGM---AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL 174 (306)
T ss_dssp EECHHHHH---TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred eECchhhh---hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 88866321 1234555555666666666666542
Q ss_pred -------------CCCCeEcCCCCCCceEecC---CCCE-EEccCCcccc
Q 004400 533 -------------SRIKVVHRDIKATNVLLDK---DLNS-KISDFGLAKL 565 (756)
Q Consensus 533 -------------g~~~iiH~Dikp~Nill~~---~~~~-kl~DFGla~~ 565 (756)
..+.++|+|+++.||+++. ++.+ .|+||+.+..
T Consensus 175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2234699999999999997 4554 8999998864
No 421
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=5.9e-08 Score=97.90 Aligned_cols=97 Identities=21% Similarity=0.364 Sum_probs=74.4
Q ss_pred eeccCcc---ccccCCccCcCcCCCcEEEeecCcccc--cCCcccCCCCCCcEEeccCCeecccCCccccCCC--CCCEE
Q 004400 69 ISLIANR---LKGPIPKYLANISTLVNLTVQYNQFSG--ELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLT--NMKDF 141 (756)
Q Consensus 69 l~l~~n~---~~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L 141 (756)
+++..|+ +.+.++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 4555563 223333334678999999999999997 4557788999999999999999965 3355555 99999
Q ss_pred EeeCCcccccCC-------hhhcCcCCCcEEEc
Q 004400 142 RISDNQFTGQIP-------SFIQNWTKLEKLFI 167 (756)
Q Consensus 142 ~L~~N~l~~~~p-------~~~~~l~~L~~L~l 167 (756)
+|++|.+.+.+| ..+..+++|+.|+-
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 999999997666 35788999998863
No 422
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.42 E-value=1.7e-06 Score=88.26 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=98.5
Q ss_pred cccCCCCc-cEEEeecc-CCcEEEEEEccccCcccHHHHHHHHHHHHhCC-CCceeeEeeEEEeCCeEEEEEEecCCCCH
Q 004400 423 NIGEGGFG-PVYKGLLA-DGTAIAVKQLSSKSKQGNREFINEIGMISALQ-HPNLVKLYGCCIEGNQLLLIYEYLENNSL 499 (756)
Q Consensus 423 ~lg~G~~g-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV~e~~~~gsL 499 (756)
.+..|..| .||+.... ++..+++|+-... ....+.+|...|+.+. +--+.++++++.+++..++|||+++|.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 34456555 58987744 5678899986432 3456888999998884 33367789999999999999999999988
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcC-----------------------------------------------
Q 004400 500 ARALFEHRLKLDWPTRRRICLGIARGLAYLHGE----------------------------------------------- 532 (756)
Q Consensus 500 ~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~----------------------------------------------- 532 (756)
.+..... ......++.++++.|+.||..
T Consensus 108 ~~~~~~~-----~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (272)
T 4gkh_A 108 FQVLEEY-----PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKE 182 (272)
T ss_dssp HHHHHHC-----GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHH
T ss_pred cccccCC-----HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHH
Confidence 7765422 223445667777777777741
Q ss_pred --------CCCCeEcCCCCCCceEecCCCCEEEccCCccc
Q 004400 533 --------SRIKVVHRDIKATNVLLDKDLNSKISDFGLAK 564 (756)
Q Consensus 533 --------g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~ 564 (756)
..+-++|+|+.+.|||++.++.+-|+||+.+.
T Consensus 183 l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 183 MHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 11237999999999999987767799999886
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.22 E-value=6.6e-07 Score=95.46 Aligned_cols=79 Identities=6% Similarity=0.033 Sum_probs=55.2
Q ss_pred cCcc-cCCCCccEEEeecc-------CCcEEEEEEccccC---cccHHHHHHHHHHHHhCC-C--CceeeEeeEEEeC--
Q 004400 421 DNNI-GEGGFGPVYKGLLA-------DGTAIAVKQLSSKS---KQGNREFINEIGMISALQ-H--PNLVKLYGCCIEG-- 484 (756)
Q Consensus 421 ~~~l-g~G~~g~Vy~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~-- 484 (756)
.+.| +.|....+|+.... +++.+++|...... ......+.+|+.+++.+. + -.+.+++.++.++
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88889999998754 26788899865432 111245778999888884 3 2466788877655
Q ss_pred -CeEEEEEEecCCCCH
Q 004400 485 -NQLLLIYEYLENNSL 499 (756)
Q Consensus 485 -~~~~lV~e~~~~gsL 499 (756)
+..++||||++|..+
T Consensus 105 ~g~~~~v~e~l~G~~l 120 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVP 120 (357)
T ss_dssp TSSCEEEEECCCCBCC
T ss_pred cCCceEEEEecCCCCh
Confidence 356899999998654
No 424
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=98.07 E-value=7.1e-06 Score=86.69 Aligned_cols=138 Identities=17% Similarity=0.239 Sum_probs=80.2
Q ss_pred CcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCC--CceeeEee------EEEeCCeEEEEEEe
Q 004400 422 NNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQH--PNLVKLYG------CCIEGNQLLLIYEY 493 (756)
Q Consensus 422 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~------~~~~~~~~~lV~e~ 493 (756)
+.|+.|..+.||+....+| .+++|+.... ...+..|..+++.+.. -.+.+++. +...++..++||+|
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 4566677899999887655 4889988642 2334455555555531 12333332 22457788999999
Q ss_pred cCCCCHH--------------HHHHhcCC-------------CCCHHHH-------------------------------
Q 004400 494 LENNSLA--------------RALFEHRL-------------KLDWPTR------------------------------- 515 (756)
Q Consensus 494 ~~~gsL~--------------~~l~~~~~-------------~l~~~~~------------------------------- 515 (756)
++|..+. ..++.... .-.|...
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986431 11221100 0123211
Q ss_pred HHHHHHHHHHHHHHHc----------CCCCCeEcCCCCCCceEecCCCCEEEccCCccc
Q 004400 516 RRICLGIARGLAYLHG----------ESRIKVVHRDIKATNVLLDKDLNSKISDFGLAK 564 (756)
Q Consensus 516 ~~i~~~ia~~L~~LH~----------~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~ 564 (756)
..+...+..++++|+. ..+..++|||+++.||+++.++.+.|+||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 0111224446667763 013459999999999999888889999999875
No 425
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=98.07 E-value=9e-06 Score=87.98 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=50.0
Q ss_pred cCcccCCCCccEEEeecc-CCcEEEEEEccccCc-------ccHHHHHHHHHHHHhCCC--Ccee-eEeeEEEeCCeEEE
Q 004400 421 DNNIGEGGFGPVYKGLLA-DGTAIAVKQLSSKSK-------QGNREFINEIGMISALQH--PNLV-KLYGCCIEGNQLLL 489 (756)
Q Consensus 421 ~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l~h--~niv-~l~~~~~~~~~~~l 489 (756)
.+.+|.|..+.||++... +++.|+||....... .....+..|.++++.+.. +..+ +++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 467999999999999754 568899998643211 123456789999888742 4433 45543 4555689
Q ss_pred EEEecCCC
Q 004400 490 IYEYLENN 497 (756)
Q Consensus 490 V~e~~~~g 497 (756)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999874
No 426
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.87 E-value=5.8e-05 Score=78.25 Aligned_cols=138 Identities=16% Similarity=0.149 Sum_probs=93.3
Q ss_pred cccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCC---CCceeeEeeEEEeCCeEEEEEEecC
Q 004400 419 ATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQ---HPNLVKLYGCCIEGNQLLLIYEYLE 495 (756)
Q Consensus 419 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lV~e~~~ 495 (756)
...+.|+.|....+|+... +++.+++|+.... ....+.+|.+.|+.+. ...+.+++.++..++..++||||++
T Consensus 39 ~~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~ 114 (312)
T 3jr1_A 39 KHKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALN 114 (312)
T ss_dssp CEEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCC
T ss_pred eeeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEecc
Confidence 3456789999999999886 4677889987532 3467889999998884 3568888998888889999999999
Q ss_pred CCCHH--------H---HHHhcCC--C-------------------CCHHHHH---HHHH----------------HHHH
Q 004400 496 NNSLA--------R---ALFEHRL--K-------------------LDWPTRR---RICL----------------GIAR 524 (756)
Q Consensus 496 ~gsL~--------~---~l~~~~~--~-------------------l~~~~~~---~i~~----------------~ia~ 524 (756)
+..+. + .|+.... . -+|.... ++.. .++.
T Consensus 115 G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~ 194 (312)
T 3jr1_A 115 KSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQ 194 (312)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 87541 2 2222211 1 1454321 1111 1111
Q ss_pred -HHHHHHc-CCCCCeEcCCCCCCceEecCCCCEEEccCC
Q 004400 525 -GLAYLHG-ESRIKVVHRDIKATNVLLDKDLNSKISDFG 561 (756)
Q Consensus 525 -~L~~LH~-~g~~~iiH~Dikp~Nill~~~~~~kl~DFG 561 (756)
....|.. ...+.+||+|+.+.|++++.++ +.|.||.
T Consensus 195 ~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 195 IVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 1233432 2346789999999999999887 8899984
No 427
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=6.9e-06 Score=76.80 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=50.3
Q ss_pred CCCcEEEeecCcccccCCcccCCCCCCcEEeccCCe-ecccCCccccCC----CCCCEEEeeCCc-ccccCChhhcCcCC
Q 004400 88 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNN-FTGELPKTFAKL----TNMKDFRISDNQ-FTGQIPSFIQNWTK 161 (756)
Q Consensus 88 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~ 161 (756)
.+|+.|||+++.|+...-..+..+++|+.|+|++|. ++..--..++.+ ++|++|+|++|. ++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777777777765555556677777777777764 553322334443 257777777764 66444445556666
Q ss_pred CcEEEccCCc
Q 004400 162 LEKLFIQPSG 171 (756)
Q Consensus 162 L~~L~l~~N~ 171 (756)
|+.|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666653
No 428
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.83 E-value=9.9e-05 Score=75.82 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=58.9
Q ss_pred cCccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCC---ceeeEeeEEEeCCeEEEEEE
Q 004400 416 NNFATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHP---NLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 416 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lV~e 492 (756)
........+|.|..+.||+.+..||+.|++|+...........|.+|+..|+.+.-. -+.+++++ + ..++|||
T Consensus 15 ~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~--~~~lv~e 90 (288)
T 3f7w_A 15 REVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--D--DRTLAME 90 (288)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--E--TTEEEEE
T ss_pred CCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--c--CceEEEE
Confidence 455667889999999999999999999999987655444445688999999988422 23444443 2 2378999
Q ss_pred ecCCCC
Q 004400 493 YLENNS 498 (756)
Q Consensus 493 ~~~~gs 498 (756)
|++++.
T Consensus 91 ~l~~~~ 96 (288)
T 3f7w_A 91 WVDERP 96 (288)
T ss_dssp CCCCCC
T ss_pred eecccC
Confidence 998764
No 429
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=1.4e-05 Score=74.65 Aligned_cols=91 Identities=12% Similarity=0.129 Sum_probs=68.3
Q ss_pred CcccCCCCCCcEEeccCCeecccCCccccCCCCCCEEEeeCCc-ccccCChhhcCc----CCCcEEEccCCc-CcCCCCc
Q 004400 105 PEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQ-FTGQIPSFIQNW----TKLEKLFIQPSG-LAGPIPS 178 (756)
Q Consensus 105 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~l~~N~-l~~~~p~ 178 (756)
|.....-.+|+.|+|+++.++..--..+.++++|+.|+|++|. ++..--..++.+ ++|++|+|++|. ++...-.
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4433333489999999999886555667889999999999995 776555566664 479999999985 7755455
Q ss_pred cccCCCCCCeEEccCCC
Q 004400 179 GIFSLENLTDLRISDLN 195 (756)
Q Consensus 179 ~~~~l~~L~~L~l~~n~ 195 (756)
.+.++++|+.|+++++.
T Consensus 134 ~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HGGGCTTCCEEEEESCT
T ss_pred HHhcCCCCCEEECCCCC
Confidence 67778888888888764
No 430
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.65 E-value=0.00017 Score=78.42 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=45.8
Q ss_pred ccCcccCCCCccEEEeeccCCcEEEEEEcccc------C-c--ccHHHHHHHHHHHH-hCCCCceeeEeeEEEeCCeEEE
Q 004400 420 TDNNIGEGGFGPVYKGLLADGTAIAVKQLSSK------S-K--QGNREFINEIGMIS-ALQHPNLVKLYGCCIEGNQLLL 489 (756)
Q Consensus 420 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~------~-~--~~~~~~~~E~~~l~-~l~h~niv~l~~~~~~~~~~~l 489 (756)
..+.||.|..+.||++.. +++.++||..... . . .....+..|+..+. ......+.+++.+. ++..++
T Consensus 38 ~i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~l 114 (420)
T 2pyw_A 38 VIKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALI 114 (420)
T ss_dssp EEEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEE
T ss_pred EEEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEE
Confidence 346789999999999964 4678999943221 0 1 12233444443332 22234566666664 567799
Q ss_pred EEEec-CC
Q 004400 490 IYEYL-EN 496 (756)
Q Consensus 490 V~e~~-~~ 496 (756)
||||+ ++
T Consensus 115 v~e~l~~g 122 (420)
T 2pyw_A 115 GMRYLEPP 122 (420)
T ss_dssp EECCCCTT
T ss_pred EEeecCCc
Confidence 99999 76
No 431
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.32 E-value=0.0014 Score=68.73 Aligned_cols=140 Identities=18% Similarity=0.160 Sum_probs=73.6
Q ss_pred cCcccCCCCcc-EEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCC--CceeeEeeEEEeCCeEEEEEEecCCC
Q 004400 421 DNNIGEGGFGP-VYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQH--PNLVKLYGCCIEGNQLLLIYEYLENN 497 (756)
Q Consensus 421 ~~~lg~G~~g~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lV~e~~~~g 497 (756)
.+.|+.|+... +|+....+|+.+++|....... ..+..|+.+++.+.. -.+.+++.+..+.+ ++|||++.+.
T Consensus 23 ~~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~---~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~ 97 (333)
T 3csv_A 23 RTPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG---GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDA 97 (333)
T ss_dssp ECC--------CCEEEECTTCCEEEEEECCTTTT---CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSC
T ss_pred eeECCCCCCCceEEEEEcCCCCeEEEEECCCCCC---ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCc
Confidence 34566665554 6677655467777876543221 234456676666632 23455666533333 7899999887
Q ss_pred CHHHHHHhcC-------------------------CCCCHHHHH-------H-H------------HHHHHHHHHHHH--
Q 004400 498 SLARALFEHR-------------------------LKLDWPTRR-------R-I------------CLGIARGLAYLH-- 530 (756)
Q Consensus 498 sL~~~l~~~~-------------------------~~l~~~~~~-------~-i------------~~~ia~~L~~LH-- 530 (756)
.+.+++.... ..++..... . + ...+...++.+.
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~ 177 (333)
T 3csv_A 98 LFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSA 177 (333)
T ss_dssp BHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 7765443110 011111100 0 0 001112222221
Q ss_pred -cCCCCCeEcCCCCCCceEecCC----CCEEEccCCcccc
Q 004400 531 -GESRIKVVHRDIKATNVLLDKD----LNSKISDFGLAKL 565 (756)
Q Consensus 531 -~~g~~~iiH~Dikp~Nill~~~----~~~kl~DFGla~~ 565 (756)
......++|||+.+.|||++.+ ..+.|+||+.+..
T Consensus 178 ~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 178 QLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp HCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred cccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 1123458999999999999875 6799999999874
No 432
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=7.1e-05 Score=71.28 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=65.4
Q ss_pred CcCcCCCcEEEeecC-cccc----cCCcccCCCCCCcEEeccCCeeccc----CCccccCCCCCCEEEeeCCcccccC--
Q 004400 84 LANISTLVNLTVQYN-QFSG----ELPEELGSLLNLEKLHLSSNNFTGE----LPKTFAKLTNMKDFRISDNQFTGQI-- 152 (756)
Q Consensus 84 l~~l~~L~~L~L~~N-~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~-- 152 (756)
+.+-+.|++|+|++| +|.. .+-.++..-+.|+.|+|++|+|... +...+..-+.|+.|+|+.|+|....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344567888888875 6653 2334566677788888888887732 2333445577888888888877432
Q ss_pred --ChhhcCcCCCcEEEccCCcC---cC----CCCccccCCCCCCeEEccCC
Q 004400 153 --PSFIQNWTKLEKLFIQPSGL---AG----PIPSGIFSLENLTDLRISDL 194 (756)
Q Consensus 153 --p~~~~~l~~L~~L~l~~N~l---~~----~~p~~~~~l~~L~~L~l~~n 194 (756)
..++..-+.|++|+|++|.. .. .+...+..-+.|+.|+++.|
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 33444456677777765432 21 12233444455666655543
No 433
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.28 E-value=0.0005 Score=71.01 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=74.9
Q ss_pred cCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCce-eeEeeEEEeCCeEEEEEEec-CCCC
Q 004400 421 DNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNL-VKLYGCCIEGNQLLLIYEYL-ENNS 498 (756)
Q Consensus 421 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lV~e~~-~~gs 498 (756)
.+.|+.|....+|+. +.+++|+....... .....+|+.+++.+....+ .+++++ +++.-++|+||+ ++.+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCTTCEE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecCCCcc
Confidence 577889999999998 56888887643211 1123568877777743333 345543 344457899999 5544
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHc-----------------------------------------------
Q 004400 499 LARALFEHRLKLDWPTRRRICLGIARGLAYLHG----------------------------------------------- 531 (756)
Q Consensus 499 L~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~----------------------------------------------- 531 (756)
+....... +..++.++++.|+-||+
T Consensus 95 l~~~~~~~--------~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l 166 (301)
T 3dxq_A 95 MSPEKFKT--------RPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSAL 166 (301)
T ss_dssp CCHHHHHH--------STTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHH
T ss_pred CCHhhHhh--------hHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 32100000 00112222222222222
Q ss_pred ---CCCCCeEcCCCCCCceEecCCCCEEEccCCcccc
Q 004400 532 ---ESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKL 565 (756)
Q Consensus 532 ---~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~ 565 (756)
..+..++|+|+.+.||+ ..++.+.++||..+..
T Consensus 167 ~~~~~~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~ 202 (301)
T 3dxq_A 167 AAHPLPLAACHCDPLCENFL-DTGERMWIVDWEYSGM 202 (301)
T ss_dssp HSSCCCCEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred HhcCCCceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence 12234799999999999 5667889999998864
No 434
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=97.25 E-value=0.00034 Score=76.08 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=49.4
Q ss_pred cCcccCCCCccEEEeeccC--------CcEEEEEEccccCcccHHHHHHHHHHHHhCCCCce-eeEeeEEEeCCeEEEEE
Q 004400 421 DNNIGEGGFGPVYKGLLAD--------GTAIAVKQLSSKSKQGNREFINEIGMISALQHPNL-VKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 421 ~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lV~ 491 (756)
.+.|+.|....||++...+ ++.+++|+.... .....+.+|..+++.+...++ .++++.+. + .+|+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS--G--GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--CEEE
Confidence 4568888889999998653 578999988432 122456689999888853334 56666543 2 3899
Q ss_pred EecCCC
Q 004400 492 EYLENN 497 (756)
Q Consensus 492 e~~~~g 497 (756)
||++|.
T Consensus 152 e~l~G~ 157 (429)
T 1nw1_A 152 EYIPSR 157 (429)
T ss_dssp CCCCEE
T ss_pred EEeCCc
Confidence 999864
No 435
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=97.20 E-value=0.00062 Score=72.44 Aligned_cols=138 Identities=19% Similarity=0.240 Sum_probs=82.1
Q ss_pred CcccCCCCccEEEeecc--------CCcEEEEEEccccCcccHHHHHHHHHHHHhCC-CCceeeEeeEEEeCCeEEEEEE
Q 004400 422 NNIGEGGFGPVYKGLLA--------DGTAIAVKQLSSKSKQGNREFINEIGMISALQ-HPNLVKLYGCCIEGNQLLLIYE 492 (756)
Q Consensus 422 ~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV~e 492 (756)
+.+..|-...+|+.... +++.|++|+.... ......+.+|.++++.+. +.-..++++++.+ .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 46777888999998865 3578999987432 234456778999998884 3223556665533 39999
Q ss_pred ecCCCCHH--------------HHH---HhcC----CCCC--HHHHHHHHHHHHH-------------------HHHH--
Q 004400 493 YLENNSLA--------------RAL---FEHR----LKLD--WPTRRRICLGIAR-------------------GLAY-- 528 (756)
Q Consensus 493 ~~~~gsL~--------------~~l---~~~~----~~l~--~~~~~~i~~~ia~-------------------~L~~-- 528 (756)
|++|..|. +.| +... .... |.++.++..++.. .++.
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 99985442 111 1111 1122 3445555443321 1223
Q ss_pred --HHcC-CCCCeEcCCCCCCceEecCC----CCEEEccCCccc
Q 004400 529 --LHGE-SRIKVVHRDIKATNVLLDKD----LNSKISDFGLAK 564 (756)
Q Consensus 529 --LH~~-g~~~iiH~Dikp~Nill~~~----~~~kl~DFGla~ 564 (756)
|... ....++|+|+.+.||+++.+ +.+.++||..+.
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 3222 23357999999999999876 689999999875
No 436
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.20 E-value=0.0015 Score=68.17 Aligned_cols=140 Identities=12% Similarity=0.116 Sum_probs=82.7
Q ss_pred CcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCc--eeeEeeE-----EEeCCeEEEEEEec
Q 004400 422 NNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPN--LVKLYGC-----CIEGNQLLLIYEYL 494 (756)
Q Consensus 422 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~-----~~~~~~~~lV~e~~ 494 (756)
..++ |....||+....+|+.+++|...... .....+..|..+++.+.... +++++.. ...++..++||+|+
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence 3466 88889999887778789999986321 23456777888887774222 3444432 23456778999999
Q ss_pred CCCCHH-----H------H---HHh--c------CCCCCHHHH----H------------------HHHHHHHHHHHHHH
Q 004400 495 ENNSLA-----R------A---LFE--H------RLKLDWPTR----R------------------RICLGIARGLAYLH 530 (756)
Q Consensus 495 ~~gsL~-----~------~---l~~--~------~~~l~~~~~----~------------------~i~~~ia~~L~~LH 530 (756)
+|..+. . . ++. . ....++... . ..+..++..++-+-
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 885321 1 1 111 0 011222211 0 11111222222221
Q ss_pred c-CCCCCeEcCCCCCCceEecCCCCEEEccCCcccc
Q 004400 531 G-ESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKL 565 (756)
Q Consensus 531 ~-~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~ 565 (756)
. ..+..++|||+++.||+++ + .+.|+||+.+..
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 1 1233579999999999999 4 899999998763
No 437
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.18 E-value=0.0011 Score=69.13 Aligned_cols=141 Identities=17% Similarity=0.152 Sum_probs=80.0
Q ss_pred cCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCc--eeeEeeE------EEeCCeEEEEEE
Q 004400 421 DNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPN--LVKLYGC------CIEGNQLLLIYE 492 (756)
Q Consensus 421 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~------~~~~~~~~lV~e 492 (756)
.+.|+.|....+|+....+| .+++|..... .....+..|+.+++.+.... +.+++.. ....+..+++++
T Consensus 27 ~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~ 103 (322)
T 2ppq_A 27 YKGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALIS 103 (322)
T ss_dssp EEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEE
T ss_pred eeccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEE
Confidence 35677788899999987666 5788987652 12234566777777664222 2333321 233567899999
Q ss_pred ecCCCCHH-----------H---HHHhcCCC--------C---CHHHHHH------------HHHHHHHHHHHHHcC---
Q 004400 493 YLENNSLA-----------R---ALFEHRLK--------L---DWPTRRR------------ICLGIARGLAYLHGE--- 532 (756)
Q Consensus 493 ~~~~gsL~-----------~---~l~~~~~~--------l---~~~~~~~------------i~~~ia~~L~~LH~~--- 532 (756)
|++|..+. + .++..... . .|..... +...+...+++++..
T Consensus 104 ~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~ 183 (322)
T 2ppq_A 104 FLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPK 183 (322)
T ss_dssp CCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCC
T ss_pred eCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCcc
Confidence 99986431 1 11211000 1 1222110 001244455555521
Q ss_pred -CCCCeEcCCCCCCceEecCCCCEEEccCCccc
Q 004400 533 -SRIKVVHRDIKATNVLLDKDLNSKISDFGLAK 564 (756)
Q Consensus 533 -g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~ 564 (756)
.+..++|+|+++.||+++++..+.|+||+.+.
T Consensus 184 ~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 184 DLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp SSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred cCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 23358999999999999987656899999875
No 438
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.92 E-value=0.00021 Score=68.02 Aligned_cols=119 Identities=8% Similarity=0.177 Sum_probs=73.4
Q ss_pred cccCCCCCCcEEeccCC-eecc----cCCccccCCCCCCEEEeeCCcccccC----ChhhcCcCCCcEEEccCCcCcCC-
Q 004400 106 EELGSLLNLEKLHLSSN-NFTG----ELPKTFAKLTNMKDFRISDNQFTGQI----PSFIQNWTKLEKLFIQPSGLAGP- 175 (756)
Q Consensus 106 ~~~~~l~~L~~L~L~~N-~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~l~~N~l~~~- 175 (756)
..+.+-+.|+.|+|++| +|.. .+...+..-+.|+.|+|++|+|.... ...+..-+.|+.|+|+.|.|...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 44566778999999985 7652 23445566678999999999988443 34444567888888888888643
Q ss_pred ---CCccccCCCCCCeEEccCCCCCCCCccccccccccEEEcccccccC----CCCccccCCCCCcEEEccCCcCC
Q 004400 176 ---IPSGIFSLENLTDLRISDLNGPEATFPQLGNMKMTKLILRNCNITG----ELPRYLGKMTKLKVLDLSFNRLR 244 (756)
Q Consensus 176 ---~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~ 244 (756)
+..++..-+.|++|+|++|... .+.. .+...+..-+.|+.|+++.|.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~--------------------~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQS--------------------VLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSC--------------------CCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCc--------------------CcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2233444445666655542110 1221 13344556677777877766543
No 439
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.85 E-value=0.0029 Score=69.13 Aligned_cols=73 Identities=16% Similarity=0.082 Sum_probs=47.6
Q ss_pred cCcccCCCCccEEEeeccC-CcEEEEEEccccCcccHHHHHHHHHHHHhCCCCce-eeEeeEEEeCCeEEEEEEecCCCC
Q 004400 421 DNNIGEGGFGPVYKGLLAD-GTAIAVKQLSSKSKQGNREFINEIGMISALQHPNL-VKLYGCCIEGNQLLLIYEYLENNS 498 (756)
Q Consensus 421 ~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lV~e~~~~gs 498 (756)
.+.|+.|-...+|+....+ +..+++|+....... ..+..+|..+++.+...++ .++++++ ++ .+||||++|.+
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~-~idR~~E~~vl~~L~~~gl~P~ll~~~--~~--G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE-IINREREKKISCILYNKNIAKKIYVFF--TN--GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCS-CSCHHHHHHHHHHHTTSSSBCCEEEEE--TT--EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhh-hcCHHHHHHHHHHHHhcCCCCCEEEEe--CC--eEEEEeeCCcc
Confidence 4578888889999998765 578889987543211 1122579999998865555 4566666 22 35999998743
No 440
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.71 E-value=0.012 Score=61.76 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=43.7
Q ss_pred cCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCC---CCceeeEeeE------EEeCCeEEEEEEecC
Q 004400 425 GEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQ---HPNLVKLYGC------CIEGNQLLLIYEYLE 495 (756)
Q Consensus 425 g~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~------~~~~~~~~lV~e~~~ 495 (756)
|.|....||+....+| .+++|+...... ..|+..++.+. -|.+++++.. ....+..++||+|++
T Consensus 32 G~g~~N~vy~v~~~~g-~~vLK~~~~~~~------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~ 104 (339)
T 3i1a_A 32 GADTNAFAYQADSESK-SYFIKLKYGYHD------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIH 104 (339)
T ss_dssp TSCSSCEEEEEECSSC-EEEEEEEECSSC------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCC
T ss_pred cCccccceEEEEeCCC-CEEEEEecCccc------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccC
Confidence 3444688999987777 899998755332 34555555552 2224444432 344678899999999
Q ss_pred CCCH
Q 004400 496 NNSL 499 (756)
Q Consensus 496 ~gsL 499 (756)
|..+
T Consensus 105 G~~~ 108 (339)
T 3i1a_A 105 APNG 108 (339)
T ss_dssp CCBT
T ss_pred CCcC
Confidence 8754
No 441
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.0024 Score=56.59 Aligned_cols=61 Identities=20% Similarity=0.116 Sum_probs=48.0
Q ss_pred cEEEccccccc-CCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCccccccCC
Q 004400 210 TKLILRNCNIT-GELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGNLLTGAIP 272 (756)
Q Consensus 210 ~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 272 (756)
..++.+++.|+ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+..-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 35777888886 34554432 468999999999997777888999999999999999986554
No 442
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.64 E-value=0.0014 Score=69.77 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=43.9
Q ss_pred cCcccCCCCccEEEeeccC---------CcEEEEEEccccCcccHHHHHHHHHHHHhCCCCc-eeeEeeEEEeCCeEEEE
Q 004400 421 DNNIGEGGFGPVYKGLLAD---------GTAIAVKQLSSKSKQGNREFINEIGMISALQHPN-LVKLYGCCIEGNQLLLI 490 (756)
Q Consensus 421 ~~~lg~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lV 490 (756)
...++.|....+|+....+ ++.+++|+....... ......|.++++.+...+ ..++++.. ++ ++|
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~--~~--~~v 112 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTF--NG--GRI 112 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEE--TT--EEE
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEec--CC--cEE
Confidence 3467788889999988654 268888987543221 112357888888775333 34566543 22 689
Q ss_pred EEecCCCC
Q 004400 491 YEYLENNS 498 (756)
Q Consensus 491 ~e~~~~gs 498 (756)
|||++|..
T Consensus 113 ~e~i~G~~ 120 (369)
T 3c5i_A 113 EEWLYGDP 120 (369)
T ss_dssp EECCCSEE
T ss_pred EEEecCCc
Confidence 99998753
No 443
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.57 E-value=0.0028 Score=56.23 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=14.9
Q ss_pred CcEEeccCCeecccCCccccCCCCCCEEEeeCCcc
Q 004400 114 LEKLHLSSNNFTGELPKTFAKLTNMKDFRISDNQF 148 (756)
Q Consensus 114 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 148 (756)
|+.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433333344444444444444443
No 444
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=96.29 E-value=0.0085 Score=63.91 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=80.7
Q ss_pred CcccCCCCccEEEeeccC--------CcEEEEEEccccCcc------------------cHHHHHHHHHHHHhCC-CCce
Q 004400 422 NNIGEGGFGPVYKGLLAD--------GTAIAVKQLSSKSKQ------------------GNREFINEIGMISALQ-HPNL 474 (756)
Q Consensus 422 ~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~------------------~~~~~~~E~~~l~~l~-h~ni 474 (756)
+.|..|-...+|++..++ ++.|.+++.-..... .......|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456667788899988654 367888876432211 0112335888888885 4334
Q ss_pred eeEeeEEEeCCeEEEEEEecCCCCHH--------------HH---HHhcC----CCCC--HHHHHHHHHHHH--------
Q 004400 475 VKLYGCCIEGNQLLLIYEYLENNSLA--------------RA---LFEHR----LKLD--WPTRRRICLGIA-------- 523 (756)
Q Consensus 475 v~l~~~~~~~~~~~lV~e~~~~gsL~--------------~~---l~~~~----~~l~--~~~~~~i~~~ia-------- 523 (756)
.++++++.. .+|+||++|-+|. .. ++... .... |....++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 566766532 2899999975431 11 11111 1122 234444443321
Q ss_pred --------------HHH----HHHHcCC-CCCeEcCCCCCCceEecCC------CCEEEccCCccc
Q 004400 524 --------------RGL----AYLHGES-RIKVVHRDIKATNVLLDKD------LNSKISDFGLAK 564 (756)
Q Consensus 524 --------------~~L----~~LH~~g-~~~iiH~Dikp~Nill~~~------~~~kl~DFGla~ 564 (756)
.-+ ++|...+ ...++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 112 2233322 2347999999999999887 789999998875
No 445
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.17 E-value=0.048 Score=52.11 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=69.0
Q ss_pred CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceEecCCCCEEEccCCccccCcccCcceeec
Q 004400 497 NSLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEENTHISTR 576 (756)
Q Consensus 497 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~ 576 (756)
-+|.+.|...+.++++++++.++.|.+.+|.-+-.+.. + ..+=+.|..|++..+|.|...+ +.+.
T Consensus 33 vSL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~~-~-~~~i~~~~~i~l~~dG~V~f~~-~~s~------------ 97 (229)
T 2yle_A 33 LSLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRRQ-P-RHRVRSAAQIRVWRDGAVTLAP-AADD------------ 97 (229)
T ss_dssp EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCCSGGGEEEETTSCEEECC-C---------------
T ss_pred ccHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhccc-C-CceecCCcceEEecCCceeccc-cccc------------
Confidence 38999999888899999999999999999888722110 1 1333457999999999988764 2111
Q ss_pred cccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCC
Q 004400 577 VAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSN 616 (756)
Q Consensus 577 ~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p 616 (756)
.....+.|||... ...+.+.=|||+|+++|.-+--..|
T Consensus 98 -~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 -AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp ----------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred -ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 0122366787653 3456788999999999998864433
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=95.40 E-value=0.014 Score=62.94 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=47.5
Q ss_pred cCcccCCCCccEEEeeccC--------CcEEEEEEccccCcccHHHHHHHHHHHHhCCCCc-eeeEeeEEEeCCeEEEEE
Q 004400 421 DNNIGEGGFGPVYKGLLAD--------GTAIAVKQLSSKSKQGNREFINEIGMISALQHPN-LVKLYGCCIEGNQLLLIY 491 (756)
Q Consensus 421 ~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lV~ 491 (756)
.+.+..|-...+|+....+ ++.|++++....... ..+..+|..+++.+...+ ..++++.+ .+ ++||
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~-~idR~~E~~~l~~L~~~gi~P~l~~~~--~~--~~I~ 149 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGK-FYDSKVELDVFRYLSNINIAPNIIADF--PE--GRIE 149 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-C-CCCHHHHHHHHHHHHHTTSSCCEEEEE--TT--EEEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcch-hcCHHHHHHHHHHHHhcCCCCCEEEEc--CC--CEEE
Confidence 3567778888999998653 578999987543221 123357888888874323 34555433 32 7899
Q ss_pred EecCCCC
Q 004400 492 EYLENNS 498 (756)
Q Consensus 492 e~~~~gs 498 (756)
||++|..
T Consensus 150 efI~G~~ 156 (424)
T 3mes_A 150 EFIDGEP 156 (424)
T ss_dssp ECCCSEE
T ss_pred EEeCCcc
Confidence 9999865
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=91.35 E-value=0.32 Score=51.92 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.7
Q ss_pred eEcCCCCCCceEe------cCCCCEEEccCCcccc
Q 004400 537 VVHRDIKATNVLL------DKDLNSKISDFGLAKL 565 (756)
Q Consensus 537 iiH~Dikp~Nill------~~~~~~kl~DFGla~~ 565 (756)
++|+|+.+.|||+ +++..++++||..|..
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 5799999999999 4566799999998863
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=84.94 E-value=1.4 Score=41.93 Aligned_cols=114 Identities=9% Similarity=0.093 Sum_probs=80.0
Q ss_pred CCCceeeEeeEEEeCCeEEEEEEecCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEcCCCCCCceE
Q 004400 470 QHPNLVKLYGCCIEGNQLLLIYEYLENN-SLARALFEHRLKLDWPTRRRICLGIARGLAYLHGESRIKVVHRDIKATNVL 548 (756)
Q Consensus 470 ~h~niv~l~~~~~~~~~~~lV~e~~~~g-sL~~~l~~~~~~l~~~~~~~i~~~ia~~L~~LH~~g~~~iiH~Dikp~Nil 548 (756)
.||++++. .+-.+++.+.+.|+.-+.+ ++. .-...+...+++++.+|+...++++.. +|--+.|+||+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~-----~ik~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL~ 111 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFD-----NIKSFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDELF 111 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGG-----GGGGSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGEE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHH-----HHHhcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceEE
Confidence 68988876 5666667766666654422 222 224678899999999999988777654 78999999999
Q ss_pred ecCCCCEEEccCCccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCC
Q 004400 549 LDKDLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNV 617 (756)
Q Consensus 549 l~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~ 617 (756)
++.++.+++.-.|+-....+. ..++..=.-.+=+++..+++++..|
T Consensus 112 f~~~~~p~i~~RGik~~l~P~-----------------------~~~ee~fL~qyKAliiall~~K~~F 157 (215)
T 4ann_A 112 FTRDGLPIAKTRGLQNVVDPL-----------------------PVSEAEFLTRYKALVICAFNEKQSF 157 (215)
T ss_dssp ECTTSCEEESCCEETTTBSCC-----------------------CCCHHHHHHHHHHHHHHHHCTTCCH
T ss_pred EcCCCCEEEEEccCccCCCCC-----------------------CCCHHHHHHHHHHHHHHHHcCCCCH
Confidence 999999999887764422211 1122222336677888899998876
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=84.11 E-value=3 Score=39.83 Aligned_cols=113 Identities=11% Similarity=0.133 Sum_probs=78.1
Q ss_pred CCCceeeEeeEEEeCCeEEEEEEecCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHHcCCCCCeEcCCCCCCce
Q 004400 470 QHPNLVKLYGCCIEGNQLLLIYEYLENN-SLARALFEHRLKLDWPTRRRICLGIARGLA-YLHGESRIKVVHRDIKATNV 547 (756)
Q Consensus 470 ~h~niv~l~~~~~~~~~~~lV~e~~~~g-sL~~~l~~~~~~l~~~~~~~i~~~ia~~L~-~LH~~g~~~iiH~Dikp~Ni 547 (756)
.||++ -..+-.+++.+.+.|+.-+++ +.. .+ ..++...+++++.+|+.... +++. -+|--+.|+||
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~-~i----~~~~~~eKlrll~nl~~L~~~~~~~-----r~tf~l~P~NL 115 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFA-AI----RKTTLLSRIRAAIHLVSKVKHHSAR-----RLIFIVCPENL 115 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHH-HH----HTSCHHHHHHHHHHHHHHHSSCCSS-----SEECCCCGGGE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHH-HH----HhcCHHHHHHHHHHHHHHHHHhhhC-----ceeEEEeCceE
Confidence 68888 334446778888888876444 333 33 26788999999999988877 6654 37889999999
Q ss_pred EecCCCCEEEccCCccccCcccCcceeeccccCccCCchHhhhcCCCCcccchhhHHHHHHHHHhCCCCC
Q 004400 548 LLDKDLNSKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYAMRGHLTEKADVYSFGIVALEIVSGRSNV 617 (756)
Q Consensus 548 ll~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~ 617 (756)
++|.++.++|.-.|+-....+.. +.+|-+ .-.+=+++..++.++..|
T Consensus 116 ~f~~~~~p~i~hRGi~~~lpP~e-------------~~ee~f----------l~qyKali~all~~K~~F 162 (219)
T 4ano_A 116 MFNRALEPFFLHVGVKESLPPDE-------------WDDERL----------LREVKATVLALTEGEYRF 162 (219)
T ss_dssp EECTTCCEEESCCEETTTBSSCS-------------CCHHHH----------HHHHHHHHHHHTTCSSCH
T ss_pred EEeCCCcEEEEEcCCcccCCCCC-------------CCHHHH----------HHHHHHHHHHHHcCCCCH
Confidence 99999999999887654222110 122222 235667888888887665
No 450
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=79.41 E-value=0.32 Score=52.92 Aligned_cols=62 Identities=8% Similarity=0.124 Sum_probs=18.6
Q ss_pred cccCcccCCCCccEEEeeccC-CcEEEE------EEcccc--CcccHHHHHHHHHHHHhCCCCceeeEeeEEEe
Q 004400 419 ATDNNIGEGGFGPVYKGLLAD-GTAIAV------KQLSSK--SKQGNREFINEIGMISALQHPNLVKLYGCCIE 483 (756)
Q Consensus 419 ~~~~~lg~G~~g~Vy~~~~~~-~~~vav------K~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 483 (756)
...+.|| ||.||+|.+.. ..+||| |..+.. .......|.+|..+++.++|||+++.+++...
T Consensus 145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence 3446676 99999999754 357888 665432 22333568889999999999999999888653
No 451
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.38 E-value=39 Score=27.51 Aligned_cols=46 Identities=24% Similarity=0.198 Sum_probs=26.5
Q ss_pred ccccCCccCcCcCCCcEEEeecCcccccCCcccCCCCCCcEEeccCC
Q 004400 76 LKGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSN 122 (756)
Q Consensus 76 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 122 (756)
++.+-..+|.++++|+.+.|-.+ ++.+...+|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34444456666666666666654 33344556666666666666543
No 452
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=44.69 E-value=1.2e+02 Score=30.85 Aligned_cols=139 Identities=13% Similarity=0.123 Sum_probs=72.5
Q ss_pred ccccCcccCCCCccEEEeeccCCcEEEEEEccccCcccHHHHHHHHHHHHhCCCCceeeEeeE-----------------
Q 004400 418 FATDNNIGEGGFGPVYKGLLADGTAIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGC----------------- 480 (756)
Q Consensus 418 ~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~----------------- 480 (756)
+...+..-.|. +.||.+.. ++..|+||-.. ....+.|..++...=.+.-|+..-+.-.
T Consensus 71 v~~I~~s~~Gs-tgvff~~t-d~~~~VVK~s~---~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~ 145 (342)
T 1cja_A 71 FKGIERSEKGT-EGLFFVET-ESGVFIVKRST---NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKS 145 (342)
T ss_dssp EEEEEECCSTT-SCEEEEEE-SSCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSS
T ss_pred eeEEEeccCCC-CCeEEEEe-CCCEEEEeCcH---HHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhh
Confidence 44445555565 45555554 58889999542 2223344445554445556653222111
Q ss_pred -----EEeCCeEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHH--HHHHHHHHcCCC-CCeEc-CCCCCCceEec
Q 004400 481 -----CIEGNQLLLIYEYLENNSLARALFEH-RLKLDWPTRRRICLGI--ARGLAYLHGESR-IKVVH-RDIKATNVLLD 550 (756)
Q Consensus 481 -----~~~~~~~~lV~e~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i--a~~L~~LH~~g~-~~iiH-~Dikp~Nill~ 550 (756)
.......+++|+|.+|..|...-... ...++. +.+.++ +-++.++..++. .+.++ .--.++|||++
T Consensus 146 ~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~~~~f~~----~~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~ 221 (342)
T 1cja_A 146 FRVITTLANQANILLMELVRGITLNKLTTTSAPEVLTK----STMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLS 221 (342)
T ss_dssp SCHHHHHTTCSEEEEEECCCEEESTTCCSSSHHHHSCH----HHHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEE
T ss_pred hHHHHHhhcccceehhhhcCCCccccchhhhhhhhcCH----HHHHhhchhheehhhhcCCccCcccccCCCChhheEEe
Confidence 00122567999999876543210000 001221 223333 345566665542 23332 22578999998
Q ss_pred CCCC-EEEccCCcccc
Q 004400 551 KDLN-SKISDFGLAKL 565 (756)
Q Consensus 551 ~~~~-~kl~DFGla~~ 565 (756)
++.. +.++|-+.+..
T Consensus 222 ~~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 222 ERGATVVPIDSKIIPL 237 (342)
T ss_dssp SBTTCEEECSCCCCCC
T ss_pred CCCCeEEEEcCCcccc
Confidence 7555 88999999864
No 453
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.42 E-value=30 Score=28.27 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=39.0
Q ss_pred ccccCCCCccccCCCCCcEEEccCCcCCCCCCccCcCCCCCCeEEecCc
Q 004400 217 CNITGELPRYLGKMTKLKVLDLSFNRLRGQIPSNFDDLYDVDYIYFAGN 265 (756)
Q Consensus 217 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 265 (756)
..++.+-..+|.++++|+.+.|-.+ ++.+...+|.++.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4466666778999999999999876 55577889999999999988654
No 454
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=38.73 E-value=2.8e+02 Score=30.63 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=50.6
Q ss_pred eeEeeEEEeCCeEEEEEEecCCCCHHHHHH----------hcCC------CCCHHHHHHHHHHHH--HHHHHHHcCCCCC
Q 004400 475 VKLYGCCIEGNQLLLIYEYLENNSLARALF----------EHRL------KLDWPTRRRICLGIA--RGLAYLHGESRIK 536 (756)
Q Consensus 475 v~l~~~~~~~~~~~lV~e~~~~gsL~~~l~----------~~~~------~l~~~~~~~i~~~ia--~~L~~LH~~g~~~ 536 (756)
++.|.+........ +.|++++.++.+.+. +... ...|..+..++..+| .-+.|+=.
T Consensus 402 i~~Y~Vipls~~~G-lIE~V~~~tl~~il~~~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YILG----- 475 (614)
T 3ls8_A 402 LTPYKVLATSTKHG-FMQFIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILG----- 475 (614)
T ss_dssp CCCCCEEESSSSEE-EEECCCCEEHHHHHHHTSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred eeccEEEEecCCCc-eEEEeCCccHHHHHHccChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheeee-----
Confidence 34455554444444 357777655555443 2111 112455566665544 35666643
Q ss_pred eEcCCCCCCceEecCCCCEEEccCCccc
Q 004400 537 VVHRDIKATNVLLDKDLNSKISDFGLAK 564 (756)
Q Consensus 537 iiH~Dikp~Nill~~~~~~kl~DFGla~ 564 (756)
=+|=.++|||++.+|++.=+|||..-
T Consensus 476 --igDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 476 --VGDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp --CCCCCTTSEEECTTSCEEECCCSSCT
T ss_pred --ccCCCCcceeEcCCCCEeeeehHHhh
Confidence 36778999999999999999999874
Done!