Query 004401
Match_columns 756
No_of_seqs 290 out of 1471
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 22:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0700 Protein phosphatase 2C 100.0 1.2E-79 2.5E-84 659.5 25.9 304 267-749 73-380 (390)
2 PF00481 PP2C: Protein phospha 100.0 5.2E-40 1.1E-44 336.5 16.1 181 497-751 70-253 (254)
3 KOG0698 Serine/threonine prote 100.0 8.8E-39 1.9E-43 342.4 24.2 181 497-752 113-296 (330)
4 PLN03145 Protein phosphatase 2 100.0 5.3E-38 1.1E-42 341.1 26.0 183 498-752 139-322 (365)
5 KOG0697 Protein phosphatase 1B 100.0 3E-34 6.6E-39 296.3 18.6 187 497-752 96-283 (379)
6 PTZ00224 protein phosphatase 2 100.0 2.3E-33 4.9E-38 306.4 24.1 175 502-752 86-263 (381)
7 KOG1323 Serine/threonine phosp 100.0 8.1E-30 1.7E-34 268.5 14.8 235 493-753 214-467 (493)
8 COG0631 PTC1 Serine/threonine 100.0 1.2E-27 2.6E-32 249.4 20.2 165 498-752 80-244 (262)
9 smart00332 PP2Cc Serine/threon 99.9 5.4E-26 1.2E-30 228.5 26.3 176 498-752 74-250 (255)
10 KOG0699 Serine/threonine prote 99.9 5.4E-28 1.2E-32 256.7 10.4 154 529-746 329-483 (542)
11 cd00143 PP2Cc Serine/threonine 99.9 2.8E-25 6.1E-30 221.9 26.4 176 498-752 71-247 (254)
12 PRK14559 putative protein seri 99.9 3.4E-22 7.5E-27 230.5 24.7 170 500-752 456-627 (645)
13 KOG0618 Serine/threonine phosp 99.3 3.6E-12 7.8E-17 149.7 9.5 146 530-752 609-764 (1081)
14 PF13672 PP2C_2: Protein phosp 99.3 2.9E-11 6.2E-16 120.1 11.4 48 275-324 8-55 (212)
15 KOG1379 Serine/threonine prote 99.2 1.2E-10 2.5E-15 124.3 12.8 64 689-753 236-301 (330)
16 smart00331 PP2C_SIG Sigma fact 99.2 2.9E-09 6.2E-14 104.4 21.4 54 689-744 139-192 (193)
17 TIGR02865 spore_II_E stage II 97.7 0.00066 1.4E-08 81.7 15.7 58 688-747 686-748 (764)
18 PF07228 SpoIIE: Stage II spor 97.6 0.0016 3.5E-08 63.6 14.4 55 689-745 114-175 (193)
19 KOG0699 Serine/threonine prote 87.8 0.4 8.6E-06 53.6 3.0 37 287-324 44-80 (542)
20 COG2208 RsbU Serine phosphatas 71.1 9.1 0.0002 42.3 6.5 64 689-754 286-356 (367)
21 PF05053 Menin: Menin; InterP 38.2 16 0.00036 43.3 1.5 22 279-301 169-190 (618)
22 PF08682 DUF1780: Protein of u 26.8 15 0.00033 37.5 -1.0 19 302-320 183-201 (208)
No 1
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-79 Score=659.53 Aligned_cols=304 Identities=53% Similarity=0.839 Sum_probs=268.8
Q ss_pred CCCCceeecCcCCCceEEEEEecCcceEEEEEecCCCCCChHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccC
Q 004401 267 NDNNVQWALGKAGEDRVHVVVSEEHGWLFVGIYDGFNGPDAPEFLMGNLYRAVYNELKGLFWDVEEPDETVNNVTVSVNE 346 (756)
Q Consensus 267 ~~~~~qwa~GkAgEDRvhvv~SEe~gwlFvGIYDGfnGpdA~dfL~~~Ly~~i~~eL~gl~w~~~~~~~~~~~~~~~~~e 346 (756)
...++|||||++||||||+++|||+||+|||||||||||||++||+.|||++|++||++|+|++++.-
T Consensus 73 ~~n~~q~a~~~~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f------------ 140 (390)
T KOG0700|consen 73 QANNLQEAQGKAEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERF------------ 140 (390)
T ss_pred hhhhhhhhcCCcccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhcccc------------
Confidence 34599999999999999999999999999999999999999999999999999999999999887511
Q ss_pred CCcchhhhhcCCCcccccchhhhhHhhhhhccccchhhhHHhhhhhhhhhcccccccccCCCCccccccccchhhccccC
Q 004401 347 NDNTQEIEIKNDPSVLISENELEDKERAKRVTFESEKTETRRRRLWEFLAEDDQEDGLDLSGSERFAFSVDDAISVNKAG 426 (756)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 426 (756)
T Consensus 141 -------------------------------------------------------------------------------- 140 (390)
T KOG0700|consen 141 -------------------------------------------------------------------------------- 140 (390)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhHHHHHHhhhhcccccccccccccccccccccccchhhhHHHHHhHHHHHhhhcCccCcCCCCCHHHHHHHHHHHH
Q 004401 427 SAVSRRWLLLSKLKQGLLTKHKESSQGRKSLFPWKFGLEEKEKVEVEENRVEERIVQSGKKRRVGPVDHELVLRALSRAL 506 (756)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~dhe~Vl~AL~rAl 506 (756)
+|...+...+.+..+.+.+ ......+..|++||.+||
T Consensus 141 --------------------------------~~e~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~al~~Af 177 (390)
T KOG0700|consen 141 --------------------------------PSEYKSEELEHLLVYWKQL-----------SSADQRHGDVLEALSKAF 177 (390)
T ss_pred --------------------------------ccccccchhhhhhhhhhcc-----------cccCccchhHHHHHHHHH
Confidence 1111111111111111110 111122678999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCcceeeeeeEECCeEEEEEcccCcEEEEEecCCcccCCCCCCCcccCCCCccccccc
Q 004401 507 DLTELAYLDMTEKVLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVDTGSSMDGIVEE 586 (756)
Q Consensus 507 ~~Te~afle~~~k~l~e~pela~mGSTalVvLI~~edLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~~~~l~~i~ee 586 (756)
++||++|++++++++..+|+++.|||||+|++|++.+|||||+|||||||+.....+
T Consensus 178 ~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~----------------------- 234 (390)
T KOG0700|consen 178 EATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNG----------------------- 234 (390)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCC-----------------------
Confidence 999999999999999999999999999999999999999999999999998877321
Q ss_pred cccccccCCCccccCcchhhcccceEEEcCCCCCCChHHHHHHHHhhCCCCCcccccc--cccCcceeeeeccCCccCCC
Q 004401 587 SSVTLGERGGKVAADEAPAQAMKLTAVQLSTDHSTSIEEEIIRIKNEHPDDSQCIVND--RVKGRLKVTRAFGAGFLKKP 664 (756)
Q Consensus 587 ~~~~l~~~~~~~~~~~~~~~~~~l~a~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~--RVkG~L~VTRAfGD~~lK~p 664 (756)
..|.++|||+||++++++|+.||+.+||+|+.+++++ ||+|.|+|||||||++||+|
T Consensus 235 ---------------------~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~ 293 (390)
T KOG0700|consen 235 ---------------------SWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWP 293 (390)
T ss_pred ---------------------CeEEEEecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecch
Confidence 1268999999999999999999999999999999998 99999999999999999999
Q ss_pred cch-hHHHHhhhhcccCCCCceeeeceEEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHhhhc-CCcchHHHHHHHH
Q 004401 665 KLN-DTLLEMFRNEYIGTAPYISCTPSLCHLRLCPRDQFLVLSSDGLYQYLTNQEVVSLVESFMEK-FPDGDPCTAPNRG 742 (756)
Q Consensus 665 k~N-~alle~fr~~yigt~PyVS~ePdV~~~rL~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e~-~p~~dpAq~LVee 742 (756)
++| ++|++||+++|++|+|||+|+|+|++|+|.++|+||||||||||++|||||||.+|..|+.. .|.+++|++||++
T Consensus 294 ~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~ 373 (390)
T KOG0700|consen 294 EFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRH 373 (390)
T ss_pred hhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999999999999999999887 8999999999999
Q ss_pred HHcCCCC
Q 004401 743 AASPRSK 749 (756)
Q Consensus 743 Al~rgS~ 749 (756)
|+.+.++
T Consensus 374 aL~~aak 380 (390)
T KOG0700|consen 374 ALGRAAK 380 (390)
T ss_pred HHhhhhh
Confidence 9988765
No 2
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=5.2e-40 Score=336.53 Aligned_cols=181 Identities=34% Similarity=0.467 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCCCCCcceeeeeeEECCeEEEEEcccCcEEEEEecCCcccCCCCCCCccc
Q 004401 497 LVLRALSRALDL-TELAYLDMTEKVLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVD 575 (756)
Q Consensus 497 ~Vl~AL~rAl~~-Te~afle~~~k~l~e~pela~mGSTalVvLI~~edLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~ 575 (756)
.+.++|..+|.+ ++..+...... . ....+|||+++++|.+++|||||||||||||++.+
T Consensus 70 ~~~~al~~a~~~~~~~~~~~~~~~----~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~--------------- 129 (254)
T PF00481_consen 70 DIEEALRQAFLAFTDESLYSDSEN----N-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNG--------------- 129 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----H-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETT---------------
T ss_pred chhhcccceeeecccccccccccc----c-ccccccccccccccccceeEEEeeeeeeeeeeecc---------------
Confidence 367788888888 77777663321 1 34568999999999999999999999999999988
Q ss_pred CCCCccccccccccccccCCCccccCcchhhcccceE-EEcCCCCCCChHHHHHHHHhhCCCCCcccccccccCcceeee
Q 004401 576 TGSSMDGIVEESSVTLGERGGKVAADEAPAQAMKLTA-VQLSTDHSTSIEEEIIRIKNEHPDDSQCIVNDRVKGRLKVTR 654 (756)
Q Consensus 576 ~~~~l~~i~ee~~~~l~~~~~~~~~~~~~~~~~~l~a-~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~RVkG~L~VTR 654 (756)
.. ++||.||+|+++.|+.||++.|+.... ++|+.|.|++||
T Consensus 130 -----------------------------------~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~---~~rv~g~l~~sR 171 (254)
T PF00481_consen 130 -----------------------------------GIIKQLTRDHKPSNPDERERIRKAGGRVSE---NGRVNGVLAVSR 171 (254)
T ss_dssp -----------------------------------EEEEESS---STTSHHHHHHHHHTT-GEEE---TEEETTTBSSSB
T ss_pred -----------------------------------ccccccccccccchhhccceeecccccccc---chhhhhcccccc
Confidence 23 599999999999999999999954332 899999999999
Q ss_pred eccCCccCCCcchhHHHHhhhhcccCCCCceeeeceEEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHhhhc-CCcc
Q 004401 655 AFGAGFLKKPKLNDTLLEMFRNEYIGTAPYISCTPSLCHLRLCPRDQFLVLSSDGLYQYLTNQEVVSLVESFMEK-FPDG 733 (756)
Q Consensus 655 AfGD~~lK~pk~N~alle~fr~~yigt~PyVS~ePdV~~~rL~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e~-~p~~ 733 (756)
||||..+|.+. +++|+|+|++..++|.++|.|||||||||||+|+++|++++|...... ..+.
T Consensus 172 alGd~~~k~~~----------------~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~ 235 (254)
T PF00481_consen 172 ALGDFDLKPPG----------------KPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQ 235 (254)
T ss_dssp -EE-GGGTTCT----------------SSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHH
T ss_pred ccccccccccc----------------cceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHH
Confidence 99999999742 579999999999999999999999999999999999999999877543 2467
Q ss_pred hHHHHHHHHHHcCCCCCC
Q 004401 734 DPCTAPNRGAASPRSKES 751 (756)
Q Consensus 734 dpAq~LVeeAl~rgS~Ds 751 (756)
.+|+.|+++|+.+++.|+
T Consensus 236 ~~a~~L~~~A~~~gs~DN 253 (254)
T PF00481_consen 236 EAAEKLVDEAIARGSKDN 253 (254)
T ss_dssp HHHHHHHHHHHHTTHHSH
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 899999999999999885
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-39 Score=342.43 Aligned_cols=181 Identities=34% Similarity=0.400 Sum_probs=154.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCCCCCcceeeeeeEECC-eEEEEEcccCcEEEEEecCCcccCCCCCCCcc
Q 004401 497 LVLRALSRALD-LTELAYLDMTEKVLDTNPELALMGSCLLVVLMRDE-DVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQV 574 (756)
Q Consensus 497 ~Vl~AL~rAl~-~Te~afle~~~k~l~e~pela~mGSTalVvLI~~e-dLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~ 574 (756)
.+.+||+++|. +++.+|++. ......+|||++++++.++ +|||+|||||||||++.++
T Consensus 113 ~~~~a~~~~F~~~~D~~~~~~-------~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~------------- 172 (330)
T KOG0698|consen 113 DVKDALRRAFLTKTDSEFLEK-------REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGG------------- 172 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-------ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCC-------------
Confidence 36788899999 588888765 1223468899999888865 9999999999999998751
Q ss_pred cCCCCccccccccccccccCCCccccCcchhhcccceEEEcCCCCCCChHHHHHHHHhhCCCCCcccccccccCcceeee
Q 004401 575 DTGSSMDGIVEESSVTLGERGGKVAADEAPAQAMKLTAVQLSTDHSTSIEEEIIRIKNEHPDDSQCIVNDRVKGRLKVTR 654 (756)
Q Consensus 575 ~~~~~l~~i~ee~~~~l~~~~~~~~~~~~~~~~~~l~a~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~RVkG~L~VTR 654 (756)
.+++||.||+|+.+.|+.||++.|+.....-.-+||.|.|+|||
T Consensus 173 ------------------------------------~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsR 216 (330)
T KOG0698|consen 173 ------------------------------------VAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSR 216 (330)
T ss_pred ------------------------------------eeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEee
Confidence 69999999999999999999999954332211359999999999
Q ss_pred eccCCccCCCcchhHHHHhhhhcccCCCCceeeeceEEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHhh-hcCCcc
Q 004401 655 AFGAGFLKKPKLNDTLLEMFRNEYIGTAPYISCTPSLCHLRLCPRDQFLVLSSDGLYQYLTNQEVVSLVESFM-EKFPDG 733 (756)
Q Consensus 655 AfGD~~lK~pk~N~alle~fr~~yigt~PyVS~ePdV~~~rL~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~-e~~p~~ 733 (756)
||||..+|. ++|+++|++.+.++.+.|+|||||||||||+|+|||+|++|+..+ ....+.
T Consensus 217 a~GD~~~k~-------------------~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~ 277 (330)
T KOG0698|consen 217 AFGDVELKS-------------------QGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPL 277 (330)
T ss_pred ecCCHHhcC-------------------CcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHH
Confidence 999999985 389999999999999999999999999999999999999997754 234566
Q ss_pred hHHHHHHHHHHcCCCCCCC
Q 004401 734 DPCTAPNRGAASPRSKESW 752 (756)
Q Consensus 734 dpAq~LVeeAl~rgS~Dsw 752 (756)
.+|..|..+|+.+++.|+-
T Consensus 278 ~a~~~l~~~a~~~~s~Dni 296 (330)
T KOG0698|consen 278 AAAKLLATEALSRGSKDNI 296 (330)
T ss_pred HHHHHHHHHHhhcCCCCCe
Confidence 7899999999999999974
No 4
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=5.3e-38 Score=341.09 Aligned_cols=183 Identities=22% Similarity=0.327 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeeeeeEECCeEEEEEcccCcEEEEEecCCcccCCCCCCCcccCC
Q 004401 498 VLRALSRALDLTELAYLDMTEKVLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVDTG 577 (756)
Q Consensus 498 Vl~AL~rAl~~Te~afle~~~k~l~e~pela~mGSTalVvLI~~edLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~~ 577 (756)
+.++|.+||.+++++|++... .+. ...||||+++++|.++++||+|||||||||++.+
T Consensus 139 ~~~al~~af~~~d~~~~~~~~----~~~-~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g----------------- 196 (365)
T PLN03145 139 IEKVVSSAFLQTDTAFAEACS----LDA-SLASGTTALAALVVGRSLVVANAGDCRAVLCRRG----------------- 196 (365)
T ss_pred HHHHHHHHHHHHhHHHHhhhc----ccc-CCCCcCcEEEEEEECCeEEEEecCCceEEEEcCC-----------------
Confidence 556788899999998876431 122 2349999999999999999999999999999876
Q ss_pred CCccccccccccccccCCCccccCcchhhcccceEEEcCCCCCCChHHHHHHHHhhCCCCCcccccccccCcceeeeecc
Q 004401 578 SSMDGIVEESSVTLGERGGKVAADEAPAQAMKLTAVQLSTDHSTSIEEEIIRIKNEHPDDSQCIVNDRVKGRLKVTRAFG 657 (756)
Q Consensus 578 ~~l~~i~ee~~~~l~~~~~~~~~~~~~~~~~~l~a~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~RVkG~L~VTRAfG 657 (756)
+++|||+||++..+.|+.||++.| ..+.++|+.|.|.||||||
T Consensus 197 ---------------------------------~~~~LT~DH~~~~~~E~~RI~~~G----g~v~~g~v~g~l~vTRalG 239 (365)
T PLN03145 197 ---------------------------------KAIEMSRDHKPMCSKERKRIEASG----GYVYDGYLNGQLNVARALG 239 (365)
T ss_pred ---------------------------------eEEEecCCCCCCCHHHHHHHHHcC----CceecceECCccccccccc
Confidence 689999999999999999999988 4556789999999999999
Q ss_pred CCccCCCcchhHHHHhhhhcccCCCCceeeeceEEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHhhhc-CCcchHH
Q 004401 658 AGFLKKPKLNDTLLEMFRNEYIGTAPYISCTPSLCHLRLCPRDQFLVLSSDGLYQYLTNQEVVSLVESFMEK-FPDGDPC 736 (756)
Q Consensus 658 D~~lK~pk~N~alle~fr~~yigt~PyVS~ePdV~~~rL~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e~-~p~~dpA 736 (756)
|..+|..+- ...+.++++|++..++|.++|+|||||||||||+|+++||+++|+..+.. ..+..+|
T Consensus 240 D~~~k~~k~-------------~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa 306 (365)
T PLN03145 240 DWHMEGMKG-------------SDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCS 306 (365)
T ss_pred ccccccccc-------------ccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHH
Confidence 999875320 11134789999999999999999999999999999999999999776544 3567889
Q ss_pred HHHHHHHHcCCCCCCC
Q 004401 737 TAPNRGAASPRSKESW 752 (756)
Q Consensus 737 q~LVeeAl~rgS~Dsw 752 (756)
+.|+++|+.+++.|+.
T Consensus 307 ~~Lv~~Al~rgs~DNI 322 (365)
T PLN03145 307 KELVDEALKRKSGDNL 322 (365)
T ss_pred HHHHHHHHhCCCCCCE
Confidence 9999999999999984
No 5
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=3e-34 Score=296.32 Aligned_cols=187 Identities=24% Similarity=0.343 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeeeeeEECCeEEEEEcccCcEEEEEecCCcccCCCCCCCcccC
Q 004401 497 LVLRALSRALDLTELAYLDMTEKVLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVDT 576 (756)
Q Consensus 497 ~Vl~AL~rAl~~Te~afle~~~k~l~e~pela~mGSTalVvLI~~edLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~ 576 (756)
.+.+-|+.+|.+.++-+..+.+ ...+...+||||+++++...++|++|+||||||||+++
T Consensus 96 ~~~~GIrtGFL~iDE~mr~~~~----~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng---------------- 155 (379)
T KOG0697|consen 96 NVEKGIRTGFLSIDEIMRTLSD----ISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNG---------------- 155 (379)
T ss_pred HHHhhHhhcceeHHHHHhhhhh----hhcccccCCceEEEEEecCceEEEEecCcchhheecCC----------------
Confidence 4677777888887776655432 22223348999999999999999999999999999998
Q ss_pred CCCccccccccccccccCCCccccCcchhhcccceEEEcCCCCCCChHHHHHHHHhhCCCCCcccccccccCcceeeeec
Q 004401 577 GSSMDGIVEESSVTLGERGGKVAADEAPAQAMKLTAVQLSTDHSTSIEEEIIRIKNEHPDDSQCIVNDRVKGRLKVTRAF 656 (756)
Q Consensus 577 ~~~l~~i~ee~~~~l~~~~~~~~~~~~~~~~~~l~a~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~RVkG~L~VTRAf 656 (756)
.++.-|.||+|.+|.|+.||.++| ..|+..||+|.|+|+|||
T Consensus 156 ----------------------------------~~~f~TqDHKP~~p~EkeRIqnAG----GSVMIqRvNGsLAVSRAl 197 (379)
T KOG0697|consen 156 ----------------------------------EVVFSTQDHKPYLPKEKERIQNAG----GSVMIQRVNGSLAVSRAL 197 (379)
T ss_pred ----------------------------------ceEEeccCCCCCChHHHHHHhcCC----CeEEEEEecceeeeehhc
Confidence 678999999999999999999999 678889999999999999
Q ss_pred cCCccCCCcchhHHHHhhhhcccCCCCceeeeceEEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHhhhcC-CcchH
Q 004401 657 GAGFLKKPKLNDTLLEMFRNEYIGTAPYISCTPSLCHLRLCPRDQFLVLSSDGLYQYLTNQEVVSLVESFMEKF-PDGDP 735 (756)
Q Consensus 657 GD~~lK~pk~N~alle~fr~~yigt~PyVS~ePdV~~~rL~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e~~-p~~dp 735 (756)
||..||.-. ....+.+.||++|+|....-...|.|||||||||||+|+|+|++++|...++-. +....
T Consensus 198 GDydyK~v~-----------~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~v 266 (379)
T KOG0697|consen 198 GDYDYKNVP-----------GKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEV 266 (379)
T ss_pred cCcccccCC-----------CCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHH
Confidence 999999732 344567899999999999988889999999999999999999999998887654 45678
Q ss_pred HHHHHHHHHcCCCCCCC
Q 004401 736 CTAPNRGAASPRSKESW 752 (756)
Q Consensus 736 Aq~LVeeAl~rgS~Dsw 752 (756)
|..+++.++-+||.|+-
T Consensus 267 cn~VvDtCLhKGSRDNM 283 (379)
T KOG0697|consen 267 CNDVVDTCLHKGSRDNM 283 (379)
T ss_pred HHHHHHHHHhccCccCc
Confidence 99999999999999974
No 6
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=2.3e-33 Score=306.38 Aligned_cols=175 Identities=26% Similarity=0.318 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeeeeeEE-CCeEEEEEcccCcEEEEEecCCcccCCCCCCCcccCCCCc
Q 004401 502 LSRALDLTELAYLDMTEKVLDTNPELALMGSCLLVVLMR-DEDVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVDTGSSM 580 (756)
Q Consensus 502 L~rAl~~Te~afle~~~k~l~e~pela~mGSTalVvLI~-~edLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~~~~l 580 (756)
|.+++..++..|++.. ..+|||++++++. +.++||+|||||||||++.+
T Consensus 86 l~~a~~~~d~~i~~~~----------~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g-------------------- 135 (381)
T PTZ00224 86 MEELCLEIDEEWMDSG----------REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDG-------------------- 135 (381)
T ss_pred HHHHHHHHHHHHHhcc----------cCCCCeEEEEEEEECCEEEEEEcccceEEEEECC--------------------
Confidence 4556666777776432 1359999988876 67999999999999999866
Q ss_pred cccccccccccccCCCccccCcchhhcccceEEEcCCCCCCChHHHHHHHHhhCCCCCcccccccccCcceeeeeccCCc
Q 004401 581 DGIVEESSVTLGERGGKVAADEAPAQAMKLTAVQLSTDHSTSIEEEIIRIKNEHPDDSQCIVNDRVKGRLKVTRAFGAGF 660 (756)
Q Consensus 581 ~~i~ee~~~~l~~~~~~~~~~~~~~~~~~l~a~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~RVkG~L~VTRAfGD~~ 660 (756)
+++|||.||++.++.|+.||.+.+ ..+..+|+.|.|.|||||||..
T Consensus 136 ------------------------------~~~~LT~DH~~~~~~E~~RI~~~g----g~v~~~Rv~G~l~vTRalGd~~ 181 (381)
T PTZ00224 136 ------------------------------KLVFATEDHKPNNPGERQRIEACG----GRVVSNRVDGDLAVSRAFGDRS 181 (381)
T ss_pred ------------------------------EEEEcccCCCCCCHHHHhHHHHcc----CEeccccccCceeeecccCCcc
Confidence 689999999999999999999887 4456689999999999999999
Q ss_pred cCCCcchhHHHHhhhhcccCCCCceeeeceEEEEEecCCCeEEEEEccCCCC-CCCHHHHHHHHHHhhhc-CCcchHHHH
Q 004401 661 LKKPKLNDTLLEMFRNEYIGTAPYISCTPSLCHLRLCPRDQFLVLSSDGLYQ-YLTNQEVVSLVESFMEK-FPDGDPCTA 738 (756)
Q Consensus 661 lK~pk~N~alle~fr~~yigt~PyVS~ePdV~~~rL~~~D~FLVLASDGLwD-~LSnEEVV~iV~~f~e~-~p~~dpAq~ 738 (756)
+|.+.. .. ..++.|+++|++.++.+.++| ||||||||||| +|+++||+++|...+.. .++.++|+.
T Consensus 182 ~K~~~~---------~~--~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~ 249 (381)
T PTZ00224 182 FKVKGT---------GD--YLEQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGR 249 (381)
T ss_pred cccccc---------cc--cccCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 887531 01 124568999999999999876 89999999999 89999999999765433 456789999
Q ss_pred HHHHHHcCCCCCCC
Q 004401 739 PNRGAASPRSKESW 752 (756)
Q Consensus 739 LVeeAl~rgS~Dsw 752 (756)
|+++|+.+++.|+.
T Consensus 250 Lv~~A~~rGs~DNI 263 (381)
T PTZ00224 250 VCDEAIRRGSKDNI 263 (381)
T ss_pred HHHHHHhcCCCCCE
Confidence 99999999999984
No 7
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=8.1e-30 Score=268.46 Aligned_cols=235 Identities=23% Similarity=0.327 Sum_probs=183.3
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCCcceeeeeeEECCeEEEEEcccCcEEEEEecCCcccCCCCC
Q 004401 493 VDHE-LVLRALSRALDLTELAYLDMTEKVLDTNPEL-ALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPEAVRGSGWM 570 (756)
Q Consensus 493 ~dhe-~Vl~AL~rAl~~Te~afle~~~k~l~e~pel-a~mGSTalVvLI~~edLYVANVGDSRAVL~r~~~~~~~~~~~~ 570 (756)
+.|+ .|+.||..||+..++.+ ..+.... ...|||++|++..-++|||+|+|||||||.++++...++..++
T Consensus 214 Ir~E~LViGAlEsAFqemDeqi-------arer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efT 286 (493)
T KOG1323|consen 214 IRHEHLVIGALESAFQEMDEQI-------ARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFT 286 (493)
T ss_pred CchHHhhHHHHHHHHHHHHHHH-------HHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccC
Confidence 3444 68899977766555544 3333222 2378999999999999999999999999999999888888999
Q ss_pred CCcccCCCCccccccccccccccCCCcc-ccCcchhhcccceEEEcCCCCCCC------hHHHHHHHHhhCCCCCccccc
Q 004401 571 KGQVDTGSSMDGIVEESSVTLGERGGKV-AADEAPAQAMKLTAVQLSTDHSTS------IEEEIIRIKNEHPDDSQCIVN 643 (756)
Q Consensus 571 ~~~~~~~~~l~~i~ee~~~~l~~~~~~~-~~~~~~~~~~~l~a~QLT~DHsps------~eeE~~RI~~~gpdd~~~I~n 643 (756)
|+++ ||.|+.+....|++|+++++|. .++-. ....|.-..|.+||.+. +++|..|.--.+++. ..
T Consensus 287 PetE--RqRlQ~Laf~~PeLlgneFtrLEfprRl--~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~geg----rk 358 (493)
T KOG1323|consen 287 PETE--RQRLQELAFRNPELLGNEFTRLEFPRRL--TIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEG----RK 358 (493)
T ss_pred cHHH--HHHHHHHhhcChHhhcccccceeccccc--ChhhhcceeeeeccccccceeehhhhhcCCcceecccc----hh
Confidence 8765 5667788888999999999983 22211 12356778899999974 455555544444322 23
Q ss_pred ccccCcceeeeeccCCccCCCcchhHHHHhhhhcccCCCCceeeeceEEEEEecC----CCeEEEEEccCCCCCCCHHHH
Q 004401 644 DRVKGRLKVTRAFGAGFLKKPKLNDTLLEMFRNEYIGTAPYISCTPSLCHLRLCP----RDQFLVLSSDGLYQYLTNQEV 719 (756)
Q Consensus 644 ~RVkG~L~VTRAfGD~~lK~pk~N~alle~fr~~yigt~PyVS~ePdV~~~rL~~----~D~FLVLASDGLwD~LSnEEV 719 (756)
.|+.+.+.|||.|||+.||... ..+.-+|+++|.|+|+++.|.. .|+++|||||||||++||+||
T Consensus 359 aRll~TigVsRGlGDH~Lkv~d-----------snl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneev 427 (493)
T KOG1323|consen 359 ARLLATIGVSRGLGDHHLKVVD-----------SNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEV 427 (493)
T ss_pred hhhhhhheeccccCcceeeeec-----------CCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHH
Confidence 5899999999999999998754 3466789999999999998864 366999999999999999999
Q ss_pred HHHHHHhhhcCCcch------HHHHHHHHHHcCCCCCCCC
Q 004401 720 VSLVESFMEKFPDGD------PCTAPNRGAASPRSKESWD 753 (756)
Q Consensus 720 V~iV~~f~e~~p~~d------pAq~LVeeAl~rgS~Dsw~ 753 (756)
..+|.+|+....+.| +||.|+..|........|.
T Consensus 428 a~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~k~rgWr 467 (493)
T KOG1323|consen 428 ALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQKDRGWR 467 (493)
T ss_pred HHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCccCCCcee
Confidence 999999998887666 4999999998877777774
No 8
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-27 Score=249.37 Aligned_cols=165 Identities=28% Similarity=0.358 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeeeeeEECCeEEEEEcccCcEEEEEecCCcccCCCCCCCcccCC
Q 004401 498 VLRALSRALDLTELAYLDMTEKVLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVDTG 577 (756)
Q Consensus 498 Vl~AL~rAl~~Te~afle~~~k~l~e~pela~mGSTalVvLI~~edLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~~ 577 (756)
+.+.|.+++..+++.+..... .+.+...||||++++++.++++||+|||||||||++++
T Consensus 80 ~~~~l~~~~~~~n~~i~~~~~----~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~----------------- 138 (262)
T COG0631 80 LEELLKEAILKANEAIAEEGQ----LNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDG----------------- 138 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----cccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCC-----------------
Confidence 556677778888888876542 45667789999999999999999999999999999998
Q ss_pred CCccccccccccccccCCCccccCcchhhcccceEEEcCCCCCCChHHHHHHHHhhCCCCCcccccccccCcceeeeecc
Q 004401 578 SSMDGIVEESSVTLGERGGKVAADEAPAQAMKLTAVQLSTDHSTSIEEEIIRIKNEHPDDSQCIVNDRVKGRLKVTRAFG 657 (756)
Q Consensus 578 ~~l~~i~ee~~~~l~~~~~~~~~~~~~~~~~~l~a~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~RVkG~L~VTRAfG 657 (756)
.++|||.||++.++.+..++...++ .....| ..++|||||
T Consensus 139 ---------------------------------~~~~lT~DH~~~~~~~~~~~~~~~~----~~~~~~---~~~ltralG 178 (262)
T COG0631 139 ---------------------------------ELKQLTEDHSLVNRLEQRGIITPEE----ARSHPR---RNALTRALG 178 (262)
T ss_pred ---------------------------------ceEEeccCCcHHHHHHHhcCCCHHH----HHhCcc---chhhhhhcC
Confidence 6899999999988888887655431 111222 238999999
Q ss_pred CCccCCCcchhHHHHhhhhcccCCCCceeeeceEEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHhhhcCCcchHHH
Q 004401 658 AGFLKKPKLNDTLLEMFRNEYIGTAPYISCTPSLCHLRLCPRDQFLVLSSDGLYQYLTNQEVVSLVESFMEKFPDGDPCT 737 (756)
Q Consensus 658 D~~lK~pk~N~alle~fr~~yigt~PyVS~ePdV~~~rL~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e~~p~~dpAq 737 (756)
+..+ +.|++..+.+.++ .|||||||||||+++++|++++|.. ...+++.|+
T Consensus 179 ~~~~-------------------------~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~---~~~~~~~~~ 229 (262)
T COG0631 179 DFDL-------------------------LEPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILKN---SETPQEAAD 229 (262)
T ss_pred CCcc-------------------------cceeEEEEEcCCC-CEEEEECCCCccCcCHHHHHHHHhc---CCCHHHHHH
Confidence 9873 4799999999998 6888999999999999999999943 678889999
Q ss_pred HHHHHHHcCCCCCCC
Q 004401 738 APNRGAASPRSKESW 752 (756)
Q Consensus 738 ~LVeeAl~rgS~Dsw 752 (756)
.||+.|+.+++.|+-
T Consensus 230 ~li~~a~~~g~~DNi 244 (262)
T COG0631 230 KLIELALEGGGPDNI 244 (262)
T ss_pred HHHHHHHhcCCCCce
Confidence 999999999999974
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.95 E-value=5.4e-26 Score=228.54 Aligned_cols=176 Identities=39% Similarity=0.517 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeeeeeEECCeEEEEEcccCcEEEEEecCCcccCCCCCCCcccCC
Q 004401 498 VLRALSRALDLTELAYLDMTEKVLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVDTG 577 (756)
Q Consensus 498 Vl~AL~rAl~~Te~afle~~~k~l~e~pela~mGSTalVvLI~~edLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~~ 577 (756)
+.+.|.+++..++..++..... ......||||++++++..+.+|++||||||+|+.+.+
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~----------------- 132 (255)
T smart00332 74 VEEALRKAFLKTDEEILEELES----LEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNG----------------- 132 (255)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh----ccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCC-----------------
Confidence 5667788888888888766532 2244569999999999999999999999999999976
Q ss_pred CCccccccccccccccCCCccccCcchhhcccceEEEcCCCCCCChHHHHHHHHhhCCCCCcccccccccCcceeeeecc
Q 004401 578 SSMDGIVEESSVTLGERGGKVAADEAPAQAMKLTAVQLSTDHSTSIEEEIIRIKNEHPDDSQCIVNDRVKGRLKVTRAFG 657 (756)
Q Consensus 578 ~~l~~i~ee~~~~l~~~~~~~~~~~~~~~~~~l~a~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~RVkG~L~VTRAfG 657 (756)
...+||.||++..+.|..||...++ .+..++..+.+.+||++|
T Consensus 133 ---------------------------------~~~~lt~dh~~~~~~~~~~i~~~~~----~~~~~~~~~~~~lt~~~g 175 (255)
T smart00332 133 ---------------------------------KAVQLTEDHKPSNEDERARIEAAGG----FVINGRVNGVLALSRAIG 175 (255)
T ss_pred ---------------------------------ceeEcCCCCCCcCHHHHHHHHHcCC----EEECCeECCeEecccccC
Confidence 4689999999999999999999884 445568888899999999
Q ss_pred CCccCCCcchhHHHHhhhhcccCCCCceeeeceEEEEEe-cCCCeEEEEEccCCCCCCCHHHHHHHHHHhhhcCCcchHH
Q 004401 658 AGFLKKPKLNDTLLEMFRNEYIGTAPYISCTPSLCHLRL-CPRDQFLVLSSDGLYQYLTNQEVVSLVESFMEKFPDGDPC 736 (756)
Q Consensus 658 D~~lK~pk~N~alle~fr~~yigt~PyVS~ePdV~~~rL-~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e~~p~~dpA 736 (756)
+..+| |+|+++|++...++ .++| +|||||||||++|+++++.+++.......++.++|
T Consensus 176 ~~~~~--------------------~~i~~~p~~~~~~~~~~~d-~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~ 234 (255)
T smart00332 176 DFFLK--------------------PYVSAEPDVTVVELTEKDD-FLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAA 234 (255)
T ss_pred CHhhc--------------------CCeEeeeEEEEEEecCCCc-EEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 98765 48899999999997 5544 78899999999999999999997654333567899
Q ss_pred HHHHHHHHcCCCCCCC
Q 004401 737 TAPNRGAASPRSKESW 752 (756)
Q Consensus 737 q~LVeeAl~rgS~Dsw 752 (756)
+.|++.|..++..|+.
T Consensus 235 ~~l~~~a~~~~~~Dn~ 250 (255)
T smart00332 235 KRLIDLALARGSKDNI 250 (255)
T ss_pred HHHHHHHHHcCCCCCe
Confidence 9999999999988874
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=5.4e-28 Score=256.72 Aligned_cols=154 Identities=32% Similarity=0.497 Sum_probs=137.2
Q ss_pred CCcceeeeeeEECCeEEEEEcccCcEEEEEecCCcccCCCCCCCcccCCCCccccccccccccccCCCccccCcchhhcc
Q 004401 529 LMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVDTGSSMDGIVEESSVTLGERGGKVAADEAPAQAM 608 (756)
Q Consensus 529 ~mGSTalVvLI~~edLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~~~~l~~i~ee~~~~l~~~~~~~~~~~~~~~~~ 608 (756)
.+|||++|||+.+.+|||||.||||+||++.+
T Consensus 329 DSGtTAvVcLv~g~~liVANAGDSRcV~sr~G------------------------------------------------ 360 (542)
T KOG0699|consen 329 DSGTTAVVCLVGGDKLIVANAGDSRCVLSRNG------------------------------------------------ 360 (542)
T ss_pred CCCceEEEEEecCceEEEecCCCcceEEecCC------------------------------------------------
Confidence 38999999999999999999999999999988
Q ss_pred cceEEEcCCCCCCChHHHHHHHHhhCCCCCcccccccccCcceeeeeccCCccCCCcchhHHHHhhhhcccCCCCceeee
Q 004401 609 KLTAVQLSTDHSTSIEEEIIRIKNEHPDDSQCIVNDRVKGRLKVTRAFGAGFLKKPKLNDTLLEMFRNEYIGTAPYISCT 688 (756)
Q Consensus 609 ~l~a~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~RVkG~L~VTRAfGD~~lK~pk~N~alle~fr~~yigt~PyVS~e 688 (756)
+++-|+.||+|.++.|..||.++|+ ++.+++||+|.|+++|||||++||+.+ ......+.|++.
T Consensus 361 --kAvdmS~DHKPEDevE~~RI~~AGG---~vtlDGRVNGGLNLSRA~GDHaYK~N~-----------~Lp~eEQMIsAL 424 (542)
T KOG0699|consen 361 --KAVDMSVDHKPEDEVETNRIHAAGG---QVTLDGRVNGGLNLSRAFGDHAYKKNQ-----------ELPLEEQMISAL 424 (542)
T ss_pred --ceeecccCCCcccHHHHHHHHhcCC---eEeecceecCccchhhhhhhhhhhccc-----------CCChHHHHhhhc
Confidence 7999999999999999999999996 556799999999999999999999732 222335689999
Q ss_pred ceEEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHhhhcC-CcchHHHHHHHHHHcC
Q 004401 689 PSLCHLRLCPRDQFLVLSSDGLYQYLTNQEVVSLVESFMEKF-PDGDPCTAPNRGAASP 746 (756)
Q Consensus 689 PdV~~~rL~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e~~-p~~dpAq~LVeeAl~r 746 (756)
|+|....|++.|.|+||||||||++|+.+|||++|+..+... .....++.|++.++.-
T Consensus 425 PDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp 483 (542)
T KOG0699|consen 425 PDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAP 483 (542)
T ss_pred ccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999887654 3446788888888764
No 11
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.94 E-value=2.8e-25 Score=221.92 Aligned_cols=176 Identities=36% Similarity=0.459 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeeeeeEECCeEEEEEcccCcEEEEEecCCcccCCCCCCCcccCC
Q 004401 498 VLRALSRALDLTELAYLDMTEKVLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVDTG 577 (756)
Q Consensus 498 Vl~AL~rAl~~Te~afle~~~k~l~e~pela~mGSTalVvLI~~edLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~~ 577 (756)
+..+|.++|..+++.+...... +.....+|||++++++.++.+|++|+||||+|+++.+
T Consensus 71 ~~~~l~~~~~~~~~~l~~~~~~----~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~----------------- 129 (254)
T cd00143 71 IEEALRKAFLRADEEILEEAQD----EPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNG----------------- 129 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh----ccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCC-----------------
Confidence 5567778888888888765422 2455679999999999999999999999999999877
Q ss_pred CCccccccccccccccCCCccccCcchhhcccceEEEcCCCCCCChHHHHHHHHhhCCCCCcccccccccCcceeeeecc
Q 004401 578 SSMDGIVEESSVTLGERGGKVAADEAPAQAMKLTAVQLSTDHSTSIEEEIIRIKNEHPDDSQCIVNDRVKGRLKVTRAFG 657 (756)
Q Consensus 578 ~~l~~i~ee~~~~l~~~~~~~~~~~~~~~~~~l~a~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~RVkG~L~VTRAfG 657 (756)
..+|+|.||++..+.|..||...++. +...+.++.+.+||+||
T Consensus 130 ---------------------------------~~~~lt~dh~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~t~~lG 172 (254)
T cd00143 130 ---------------------------------EAVQLTKDHKPVNEEERERIEKAGGR----VSNGRVPGVLAVTRALG 172 (254)
T ss_pred ---------------------------------ceeEcCCCCCCcChHHHHHHHHcCCc----EEeCEEcCceeeccccC
Confidence 57999999999888999999998743 22467788899999999
Q ss_pred CCccCCCcchhHHHHhhhhcccCCCCceeeeceEEEEEe-cCCCeEEEEEccCCCCCCCHHHHHHHHHHhhhcCCcchHH
Q 004401 658 AGFLKKPKLNDTLLEMFRNEYIGTAPYISCTPSLCHLRL-CPRDQFLVLSSDGLYQYLTNQEVVSLVESFMEKFPDGDPC 736 (756)
Q Consensus 658 D~~lK~pk~N~alle~fr~~yigt~PyVS~ePdV~~~rL-~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e~~p~~dpA 736 (756)
+..+|. ++.++|++..+.+ .++| +|||||||||++|+++++.+++.......++...|
T Consensus 173 ~~~~~~--------------------~~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a 231 (254)
T cd00143 173 DFDLKP--------------------GVSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAA 231 (254)
T ss_pred CccccC--------------------CEEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHHHHHhcccCHHHHH
Confidence 998763 6788999999999 6655 68899999999999999999996543222677899
Q ss_pred HHHHHHHHcCCCCCCC
Q 004401 737 TAPNRGAASPRSKESW 752 (756)
Q Consensus 737 q~LVeeAl~rgS~Dsw 752 (756)
+.|+++|..+++.|+-
T Consensus 232 ~~l~~~a~~~~~~Dn~ 247 (254)
T cd00143 232 QELVDLALRRGSHDNI 247 (254)
T ss_pred HHHHHHHHhCCCCCCE
Confidence 9999999999988864
No 12
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.90 E-value=3.4e-22 Score=230.50 Aligned_cols=170 Identities=22% Similarity=0.252 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeeeeeEECCeEEEEEcccCcEEEEEecCCcccCCCCCCCcccCCCC
Q 004401 500 RALSRALDLTELAYLDMTEKVLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVDTGSS 579 (756)
Q Consensus 500 ~AL~rAl~~Te~afle~~~k~l~e~pela~mGSTalVvLI~~edLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~~~~ 579 (756)
++|.+||..++.++.++..+. ...+...||||+++++|.++.+||+||||||+|++++++
T Consensus 456 ~~L~~ai~~AN~~I~~~~~~~--~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g------------------ 515 (645)
T PRK14559 456 ETIREAIYLANEAIYDLNQQN--ARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKG------------------ 515 (645)
T ss_pred HHHHHHHHHHHHHHHHHhhhc--ccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCC------------------
Confidence 346677777888887654321 122455699999999999999999999999999986541
Q ss_pred ccccccccccccccCCCccccCcchhhcccceEEEcCCCCCCChHHHHHHHHhhCCCCCcccccccccCcceeeeeccCC
Q 004401 580 MDGIVEESSVTLGERGGKVAADEAPAQAMKLTAVQLSTDHSTSIEEEIIRIKNEHPDDSQCIVNDRVKGRLKVTRAFGAG 659 (756)
Q Consensus 580 l~~i~ee~~~~l~~~~~~~~~~~~~~~~~~l~a~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~RVkG~L~VTRAfGD~ 659 (756)
+++|||+||++... ++.+ | - .......| .+.+.||||||+.
T Consensus 516 -------------------------------~l~QLT~DHs~~~~-lv~~----G-i-~~~~a~~~-p~~~~LTrALG~~ 556 (645)
T PRK14559 516 -------------------------------GLEQLTVDHEVGQR-EIQR----G-V-EPQIAYAR-PDAYQLTQALGPR 556 (645)
T ss_pred -------------------------------eEEEeCCCCCHHHH-HHHh----C-C-CHHHHhcC-cccceeeeccCCC
Confidence 68999999998432 2222 2 1 11111223 3567999999987
Q ss_pred ccCCCcchhHHHHhhhhcccCCCCceeeeceEEEEEecCCCeEEEEEccCCCCC-CCHHHHHHHHHHhhh-cCCcchHHH
Q 004401 660 FLKKPKLNDTLLEMFRNEYIGTAPYISCTPSLCHLRLCPRDQFLVLSSDGLYQY-LTNQEVVSLVESFME-KFPDGDPCT 737 (756)
Q Consensus 660 ~lK~pk~N~alle~fr~~yigt~PyVS~ePdV~~~rL~~~D~FLVLASDGLwD~-LSnEEVV~iV~~f~e-~~p~~dpAq 737 (756)
..+. .+|++..+.+.++| +||||||||||+ +...+..+.+...+. ..+..++|+
T Consensus 557 ~~~~-----------------------l~Pdi~~~~L~~gD-~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~ 612 (645)
T PRK14559 557 DNSA-----------------------IQPDIQFLEIEEDT-LLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLN 612 (645)
T ss_pred CCCc-----------------------ccceEEEEEcCCCC-EEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 6432 36999999998865 677999999995 333323333323233 335678999
Q ss_pred HHHHHHHcCCCCCCC
Q 004401 738 APNRGAASPRSKESW 752 (756)
Q Consensus 738 ~LVeeAl~rgS~Dsw 752 (756)
.|++.|+.++++|+.
T Consensus 613 ~Li~~Al~~gg~DNI 627 (645)
T PRK14559 613 KLIDLANQYNGHDNI 627 (645)
T ss_pred HHHHHHHHcCCCCcE
Confidence 999999999999985
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.31 E-value=3.6e-12 Score=149.66 Aligned_cols=146 Identities=20% Similarity=0.259 Sum_probs=121.3
Q ss_pred CcceeeeeeEECC--------eEEEEEcccCcEEEEEecCCcccCCCCCCCcccCCCCccccccccccccccCCCccccC
Q 004401 530 MGSCLLVVLMRDE--------DVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVDTGSSMDGIVEESSVTLGERGGKVAAD 601 (756)
Q Consensus 530 mGSTalVvLI~~e--------dLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~~~~l~~i~ee~~~~l~~~~~~~~~~ 601 (756)
-|..++.+.|+.+ .+.+||||+|.+|+++.+.
T Consensus 609 lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~---------------------------------------- 648 (1081)
T KOG0618|consen 609 LGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGK---------------------------------------- 648 (1081)
T ss_pred ccchhhheeecccccCcccchhhhHhhhccchhhhhhcCC----------------------------------------
Confidence 3556666666633 5899999999999999983
Q ss_pred cchhhcccceEEEcCCCC-CCChHHHHHHHHhhCCCCCcccc-cccccCcceeeeeccCCccCCCcchhHHHHhhhhccc
Q 004401 602 EAPAQAMKLTAVQLSTDH-STSIEEEIIRIKNEHPDDSQCIV-NDRVKGRLKVTRAFGAGFLKKPKLNDTLLEMFRNEYI 679 (756)
Q Consensus 602 ~~~~~~~~l~a~QLT~DH-sps~eeE~~RI~~~gpdd~~~I~-n~RVkG~L~VTRAfGD~~lK~pk~N~alle~fr~~yi 679 (756)
.+++|+-. ..-+++|..||+..+ .+|. ++++.|....||++|-.++-
T Consensus 649 ----------~~p~t~~~~~~v~~eE~~RI~~~~----g~i~ed~k~ngvt~~tR~iG~~~l~----------------- 697 (1081)
T KOG0618|consen 649 ----------PLPTTRSPMLEVDREEYKRIVDSK----GFITEDNKLNGVTSSTRAIGPFSLF----------------- 697 (1081)
T ss_pred ----------cCcccccccccCCHHHHHHHHHhc----CeecCCCeeeceeeeeeeccccccc-----------------
Confidence 33444433 223789999999998 4555 78999999999999988753
Q ss_pred CCCCceeeeceEEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHhhhcCCcchHHHHHHHHHHcCCCCCCC
Q 004401 680 GTAPYISCTPSLCHLRLCPRDQFLVLSSDGLYQYLTNQEVVSLVESFMEKFPDGDPCTAPNRGAASPRSKESW 752 (756)
Q Consensus 680 gt~PyVS~ePdV~~~rL~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e~~p~~dpAq~LVeeAl~rgS~Dsw 752 (756)
|.|-+.|+|....|++.|+|||||+-+||++|+-++|++.|+ ...++--+|++|++.|...|..|+-
T Consensus 698 ---P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vR---n~~dpL~AAkKL~d~AqSYgc~~nv 764 (1081)
T KOG0618|consen 698 ---PHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVR---NVEDPLLAAKKLCDLAQSYGCAENV 764 (1081)
T ss_pred ---ccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHh---cCCchHHHHHHHHHHHHhcccccCe
Confidence 588999999999999999999999999999999999999995 4566778999999999999998874
No 14
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.26 E-value=2.9e-11 Score=120.14 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=33.3
Q ss_pred cCcCCCceEEEEEecCcceEEEEEecCCCCCChHHHHHHHHHHHHHHHhh
Q 004401 275 LGKAGEDRVHVVVSEEHGWLFVGIYDGFNGPDAPEFLMGNLYRAVYNELK 324 (756)
Q Consensus 275 ~GkAgEDRvhvv~SEe~gwlFvGIYDGfnGpdA~dfL~~~Ly~~i~~eL~ 324 (756)
.|+-.||++. +..-+.+.++ .|-||.+|....+.....+=..+.+.|+
T Consensus 8 ~~~~nqD~~~-~~~~~~~~~~-aVaDG~g~~~~~~~aa~~av~~~~~~l~ 55 (212)
T PF13672_consen 8 RGAPNQDAFG-IRTDDDGNLA-AVADGVGGSPYGEEAAQLAVETFINYLK 55 (212)
T ss_dssp TSSS--EEEE-EE-TCCTCEE-EEEEEESTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEE-eeeCCCCEEE-EEEECCCCCchhHHHHHHHHHHHHHHHH
Confidence 4677899997 4444555555 9999999998888776666666666665
No 15
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.20 E-value=1.2e-10 Score=124.34 Aligned_cols=64 Identities=14% Similarity=0.292 Sum_probs=52.3
Q ss_pred ceEEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHhhh--cCCcchHHHHHHHHHHcCCCCCCCC
Q 004401 689 PSLCHLRLCPRDQFLVLSSDGLYQYLTNQEVVSLVESFME--KFPDGDPCTAPNRGAASPRSKESWD 753 (756)
Q Consensus 689 PdV~~~rL~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e--~~p~~dpAq~LVeeAl~rgS~Dsw~ 753 (756)
-++.++.+.++| +||||||||||+|.++||+.+|..... ....+..|+.|++.|.+..-.-+|.
T Consensus 236 ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~ 301 (330)
T KOG1379|consen 236 ADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQ 301 (330)
T ss_pred cceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcC
Confidence 467889999999 677999999999999999999976544 3356778999999998876555543
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.19 E-value=2.9e-09 Score=104.41 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=42.8
Q ss_pred ceEEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 004401 689 PSLCHLRLCPRDQFLVLSSDGLYQYLTNQEVVSLVESFMEKFPDGDPCTAPNRGAA 744 (756)
Q Consensus 689 PdV~~~rL~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e~~p~~dpAq~LVeeAl 744 (756)
++...+.+.++|. |+|+|||||+.++.+++.+++.... ..++.+.++.+.++++
T Consensus 139 ~~~~~~~l~~gd~-l~l~TDGl~e~~~~~~l~~~l~~~~-~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 139 VDVRELTLEPGDL-LLLYTDGLTEARNPERLEELLEELL-GSPPAEIAQRILEELL 192 (193)
T ss_pred ceeEEEeeCCCCE-EEEECCCccccCChHHHHHHHHHhc-CCCHHHHHHHHHHHHh
Confidence 5677888999986 5599999999999999999986643 3456677888887765
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=97.68 E-value=0.00066 Score=81.72 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=42.1
Q ss_pred eceEEEEEecCCCeEEEEEccCCCCCCCHHH-----HHHHHHHhhhcCCcchHHHHHHHHHHcCC
Q 004401 688 TPSLCHLRLCPRDQFLVLSSDGLYQYLTNQE-----VVSLVESFMEKFPDGDPCTAPNRGAASPR 747 (756)
Q Consensus 688 ePdV~~~rL~~~D~FLVLASDGLwD~LSnEE-----VV~iV~~f~e~~p~~dpAq~LVeeAl~rg 747 (756)
++++...++.++|. |||+||||||...+++ +.+++.. ....++++.|+.|+++|++..
T Consensus 686 ~~~~~~~~L~~GD~-Lll~SDGv~E~~~~~~~~~~~l~~~l~~-~~~~~p~ela~~Il~~a~~~~ 748 (764)
T TIGR02865 686 DVELVRKKLKNGDL-IVMVSDGVLEGEKEVEGKVLWLVRKLKE-TNTNDPEEIAEYLLEKAKELR 748 (764)
T ss_pred ccceEEEEeCCCCE-EEEECCCCCcCCcccccHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhc
Confidence 35677889999985 6699999999987533 4444432 123467788999999998753
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=97.59 E-value=0.0016 Score=63.61 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=36.7
Q ss_pred ceEEEEEecCCCeEEEEEccCCCCCCCHHHH-------HHHHHHhhhcCCcchHHHHHHHHHHc
Q 004401 689 PSLCHLRLCPRDQFLVLSSDGLYQYLTNQEV-------VSLVESFMEKFPDGDPCTAPNRGAAS 745 (756)
Q Consensus 689 PdV~~~rL~~~D~FLVLASDGLwD~LSnEEV-------V~iV~~f~e~~p~~dpAq~LVeeAl~ 745 (756)
.....+.+.++|. |+|+||||+|....+.. .+.+... ...++.+.++.|++++..
T Consensus 114 ~~~~~~~l~~gd~-l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~ 175 (193)
T PF07228_consen 114 YQEQEIQLEPGDR-LLLYTDGLFEALNEDGEFFGEERLLELLDEN-RGLSPQEIIDALLEAIDR 175 (193)
T ss_dssp EEEEEEE--TTEE-EEEECHHHCTTTCHHCHHCCCHHHHHHHHCH-TTS-HHHHHHHHHHHHHH
T ss_pred ccceEEEeccccE-EEEeCCChhhccCCccchhHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHH
Confidence 4566789999886 66999999999854433 3344322 335577788889988877
No 19
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=87.80 E-value=0.4 Score=53.55 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=29.3
Q ss_pred EecCcceEEEEEecCCCCCChHHHHHHHHHHHHHHHhh
Q 004401 287 VSEEHGWLFVGIYDGFNGPDAPEFLMGNLYRAVYNELK 324 (756)
Q Consensus 287 ~SEe~gwlFvGIYDGfnGpdA~dfL~~~Ly~~i~~eL~ 324 (756)
+-=..-|-|||+||||+|-.++.|....|-..| |+++
T Consensus 44 ~~ld~~t~mF~VYDGHGG~EVa~yca~kLPdfl-K~~k 80 (542)
T KOG0699|consen 44 VDLDTDTHMFGVYDGHGGTEVAKYCAAKLPDFL-KERK 80 (542)
T ss_pred ccccCcceEEEEecCCCcHHHHHHHHHhhhHHH-HhHH
Confidence 333677999999999999999999988886544 4544
No 20
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=71.08 E-value=9.1 Score=42.34 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=46.0
Q ss_pred ceEEEEEecCCCeEEEEEccCCCC-------CCCHHHHHHHHHHhhhcCCcchHHHHHHHHHHcCCCCCCCCC
Q 004401 689 PSLCHLRLCPRDQFLVLSSDGLYQ-------YLTNQEVVSLVESFMEKFPDGDPCTAPNRGAASPRSKESWDG 754 (756)
Q Consensus 689 PdV~~~rL~~~D~FLVLASDGLwD-------~LSnEEVV~iV~~f~e~~p~~dpAq~LVeeAl~rgS~Dsw~~ 754 (756)
+.+....+.++| .|||.|||+++ .+..+...+.+.. ....++.+.++.+.+....-...+-|+.
T Consensus 286 ~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~l~~~~~~~~~~D 356 (367)
T COG2208 286 YEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGR-LLGQPAEEILEAILESLEELQGDQIQDD 356 (367)
T ss_pred chheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhCCccccC
Confidence 445567788866 68899999999 5666777777765 3445777888888888877666555543
No 21
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=38.19 E-value=16 Score=43.34 Aligned_cols=22 Identities=45% Similarity=0.972 Sum_probs=15.5
Q ss_pred CCceEEEEEecCcceEEEEEecC
Q 004401 279 GEDRVHVVVSEEHGWLFVGIYDG 301 (756)
Q Consensus 279 gEDRvhvv~SEe~gwlFvGIYDG 301 (756)
|-..||.++||+|.|+.+|= ||
T Consensus 169 g~~dvhLalSeDHawv~fg~-d~ 190 (618)
T PF05053_consen 169 GYKDVHLALSEDHAWVVFGK-DG 190 (618)
T ss_dssp T-TT-EEEE-SS-EEEEESC-CC
T ss_pred CcchheeeecCCceEEEecC-CC
Confidence 66799999999999999976 54
No 22
>PF08682 DUF1780: Protein of unknown function (DUF1780); InterPro: IPR014796 This is a family of uncharacterised proteins. The structure of a hypothetical protein from Pseudomonas aeruginosa has shown it to adopt an alpha/beta fold. ; PDB: 1Y0K_A.
Probab=26.77 E-value=15 Score=37.51 Aligned_cols=19 Identities=53% Similarity=0.924 Sum_probs=12.2
Q ss_pred CCCCChHHHHHHHHHHHHH
Q 004401 302 FNGPDAPEFLMGNLYRAVY 320 (756)
Q Consensus 302 fnGpdA~dfL~~~Ly~~i~ 320 (756)
|-||||||||.+||=+.|.
T Consensus 183 FAhpdAP~fLr~nlGrsil 201 (208)
T PF08682_consen 183 FAHPDAPDFLRSNLGRSIL 201 (208)
T ss_dssp EE-TTS-HHHHTTTT--EE
T ss_pred ecCCCchHHHHhccCceeE
Confidence 4689999999999866543
Done!