Query 004401
Match_columns 756
No_of_seqs 290 out of 1471
Neff 4.6
Searched_HMMs 13730
Date Tue Mar 26 00:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004401.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004401hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6qa2 d.219.1.1 (A:2-296) Pr 100.0 2.8E-41 2E-45 349.3 23.9 187 497-752 95-283 (295)
2 d1txoa_ d.219.1.1 (A:) putativ 99.9 2.2E-27 1.6E-31 235.0 20.3 163 498-752 64-226 (235)
3 d1rlha_ d.256.1.1 (A:) Hypothe 15.1 54 0.0039 29.2 3.6 21 283-303 124-145 (151)
4 d1vgga_ d.256.1.1 (A:) Hypothe 13.9 57 0.0042 29.4 3.4 21 283-303 116-137 (161)
5 d1hq0a_ d.194.1.1 (A:) Type 1 11.9 63 0.0046 31.8 3.4 22 528-550 143-164 (295)
6 d1prtc2 d.169.1.2 (C:4-89) Per 9.3 31 0.0023 27.5 -0.0 13 290-302 46-58 (86)
7 d1gcqa_ b.34.2.1 (A:) Growth f 9.1 77 0.0056 23.0 2.2 30 270-304 17-46 (56)
8 d1wwha1 d.58.7.1 (A:169-249) N 8.6 94 0.0068 24.1 2.7 20 291-314 4-23 (81)
9 d1prtb2 d.169.1.2 (B:4-89) Per 8.4 31 0.0023 27.5 -0.4 13 290-302 46-58 (86)
10 d1y0ka1 c.52.1.31 (A:1-209) Hy 7.9 27 0.002 31.6 -1.1 17 302-318 184-200 (209)
No 1
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.8e-41 Score=349.28 Aligned_cols=187 Identities=24% Similarity=0.292 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeeeeeEECCeEEEEEcccCcEEEEEecCCcccCCCCCCCcccC
Q 004401 497 LVLRALSRALDLTELAYLDMTEKVLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVDT 576 (756)
Q Consensus 497 ~Vl~AL~rAl~~Te~afle~~~k~l~e~pela~mGSTalVvLI~~edLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~ 576 (756)
.+.+||++||..+++.+..+.+ ..+....||||+++++|.++++||+|||||||||++.+
T Consensus 95 ~~~~al~~a~~~~~~~~~~~~~----~~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~~---------------- 154 (295)
T d1a6qa2 95 NVKNGIRTGFLEIDEHMRVMSE----KKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNR---------------- 154 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETT----------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhh----hccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeecc----------------
Confidence 5788999999999998876653 34556679999999999999999999999999999876
Q ss_pred CCCccccccccccccccCCCccccCcchhhcccceEEEcCCCCCCChHHHHHHHHhhCCCCCcccccccccCcceeeeec
Q 004401 577 GSSMDGIVEESSVTLGERGGKVAADEAPAQAMKLTAVQLSTDHSTSIEEEIIRIKNEHPDDSQCIVNDRVKGRLKVTRAF 656 (756)
Q Consensus 577 ~~~l~~i~ee~~~~l~~~~~~~~~~~~~~~~~~l~a~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~RVkG~L~VTRAf 656 (756)
.+++||.||++.++.|+.||.+.|+ .+...|+.|.|.+||||
T Consensus 155 ----------------------------------~~~~lT~dH~~~~~~E~~Ri~~~gg----~v~~~r~~g~l~~tRa~ 196 (295)
T d1a6qa2 155 ----------------------------------KVHFFTQDHKPSNPLEKERIQNAGG----SVMIQRVNGSLAVSRAL 196 (295)
T ss_dssp ----------------------------------EEEEECCCCCTTSHHHHHHHHHTTC----CEETTEETTTBSCSBCE
T ss_pred ----------------------------------cceeeccccCcccHHHHhhHhhcCC----cccccccCCceeeeecc
Confidence 7899999999999999999999994 56678999999999999
Q ss_pred cCCccCCCcchhHHHHhhhhcccCCCCceeeeceEEEEEec-CCCeEEEEEccCCCCCCCHHHHHHHHHHhhhc-CCcch
Q 004401 657 GAGFLKKPKLNDTLLEMFRNEYIGTAPYISCTPSLCHLRLC-PRDQFLVLSSDGLYQYLTNQEVVSLVESFMEK-FPDGD 734 (756)
Q Consensus 657 GD~~lK~pk~N~alle~fr~~yigt~PyVS~ePdV~~~rL~-~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e~-~p~~d 734 (756)
||..+|.... .....++|+++|++..+.+. ++|.|||||||||||+|+++||+++|...+.. ..+..
T Consensus 197 Gd~~~k~~~~-----------~~~~~~~v~~~Pdi~~~~~~~~~~~flvL~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~ 265 (295)
T d1a6qa2 197 GDFDYKCVHG-----------KGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEK 265 (295)
T ss_dssp ECGGGSCCTT-----------CCGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHH
T ss_pred CcHHhhhccc-----------cCcccccccccccceEEEeecccceeEeeecCcccccCCHHHHHHHHHHHhhcCCCHHH
Confidence 9999987532 23456789999999999986 56789999999999999999999999776543 45678
Q ss_pred HHHHHHHHHHcCCCCCCC
Q 004401 735 PCTAPNRGAASPRSKESW 752 (756)
Q Consensus 735 pAq~LVeeAl~rgS~Dsw 752 (756)
+|+.|+++|+.+++.|+.
T Consensus 266 ~a~~Lv~~A~~~gs~DNi 283 (295)
T d1a6qa2 266 VCNEVVDTCLYKGSRDNM 283 (295)
T ss_dssp HHHHHHHHHHHTTCCSCE
T ss_pred HHHHHHHHHHhcCCCCCe
Confidence 999999999999999974
No 2
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.95 E-value=2.2e-27 Score=234.98 Aligned_cols=163 Identities=18% Similarity=0.233 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeeeeeEECCeEEEEEcccCcEEEEEecCCcccCCCCCCCcccCC
Q 004401 498 VLRALSRALDLTELAYLDMTEKVLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYQPEAVRGSGWMKGQVDTG 577 (756)
Q Consensus 498 Vl~AL~rAl~~Te~afle~~~k~l~e~pela~mGSTalVvLI~~edLYVANVGDSRAVL~r~~~~~~~~~~~~~~~~~~~ 577 (756)
+.++|++++++++..+.+.. ..+++...+|||++++++.++.+|++||||||+|+++.+
T Consensus 64 ~~~~l~~~~~~~~~~l~~~~----~~~~~~~~~gtt~~~~~~~~~~l~~anvGDSr~~l~r~g----------------- 122 (235)
T d1txoa_ 64 LLAKLDAAVRAGNSAIAAQV----EMEPDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDG----------------- 122 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHCGGGTTCEECEEEEEEETTEEEEEEESSCEEEEEETT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHh----hcccccccceeeeeeeeeccceeEEEecCCccEEEecCC-----------------
Confidence 33456677777777776654 345566678999999999999999999999999999876
Q ss_pred CCccccccccccccccCCCccccCcchhhcccceEEEcCCCCCCChHHHHHHHHhhCCCCCcccccccccCcceeeeecc
Q 004401 578 SSMDGIVEESSVTLGERGGKVAADEAPAQAMKLTAVQLSTDHSTSIEEEIIRIKNEHPDDSQCIVNDRVKGRLKVTRAFG 657 (756)
Q Consensus 578 ~~l~~i~ee~~~~l~~~~~~~~~~~~~~~~~~l~a~QLT~DHsps~eeE~~RI~~~gpdd~~~I~n~RVkG~L~VTRAfG 657 (756)
++++||.||++ ..+. ...+...... .........+||++|
T Consensus 123 ---------------------------------~~~~lt~dH~~--~~~~---~~~g~~~~~~--~~~~~~~~~lt~~~g 162 (235)
T d1txoa_ 123 ---------------------------------ELTQITKDDTF--VQTL---VDEGRITPEE--AHSHPQRSLIMRALT 162 (235)
T ss_dssp ---------------------------------EEEECSCCCBH--HHHH---HHTTSSCTTG--GGGCTTTTCBCCCBS
T ss_pred ---------------------------------EEEEecCCCcH--HHHh---hhhcccchhh--hhhccccchhhcccc
Confidence 68999999997 3333 2333211111 122344567999999
Q ss_pred CCccCCCcchhHHHHhhhhcccCCCCceeeeceEEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHhhhcCCcchHHH
Q 004401 658 AGFLKKPKLNDTLLEMFRNEYIGTAPYISCTPSLCHLRLCPRDQFLVLSSDGLYQYLTNQEVVSLVESFMEKFPDGDPCT 737 (756)
Q Consensus 658 D~~lK~pk~N~alle~fr~~yigt~PyVS~ePdV~~~rL~~~D~FLVLASDGLwD~LSnEEVV~iV~~f~e~~p~~dpAq 737 (756)
+.. +.|++..+.+.++|.| |||||||||+|+++|+.+++. ...++++|+
T Consensus 163 ~~~--------------------------~~pdi~~~~l~~~D~l-lL~SDGl~d~l~~~ei~~i~~----~~~~~~~a~ 211 (235)
T d1txoa_ 163 GHE--------------------------VEPTLTMREARAGDRY-LLCSDGLSDPVSDETILEALQ----IPEVAESAH 211 (235)
T ss_dssp SSC--------------------------CCCEEEEEECCTTCEE-EEECHHHHTTSCHHHHHHHHT----SSSHHHHHH
T ss_pred ccc--------------------------ccceEEEEecCCCCEE-EEcCcchhcCCCHHHHHHHHh----CCCHHHHHH
Confidence 764 3589999999998865 699999999999999999883 356788999
Q ss_pred HHHHHHHcCCCCCCC
Q 004401 738 APNRGAASPRSKESW 752 (756)
Q Consensus 738 ~LVeeAl~rgS~Dsw 752 (756)
.|+++|+.+++.|+.
T Consensus 212 ~Lv~~A~~~gs~DNi 226 (235)
T d1txoa_ 212 RLIELALRGGGPDNV 226 (235)
T ss_dssp HHHHHHHHTTCCSCE
T ss_pred HHHHHHHhcCCCCCE
Confidence 999999999999974
No 3
>d1rlha_ d.256.1.1 (A:) Hypothetical protein Ta1353 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=15.11 E-value=54 Score=29.15 Aligned_cols=21 Identities=29% Similarity=0.681 Sum_probs=16.9
Q ss_pred EEEEE-ecCcceEEEEEecCCC
Q 004401 283 VHVVV-SEEHGWLFVGIYDGFN 303 (756)
Q Consensus 283 vhvv~-SEe~gwlFvGIYDGfn 303 (756)
++|+| .-|||+-.+|+-|||.
T Consensus 124 ~eVIVAet~qGrgVlGVVDG~~ 145 (151)
T d1rlha_ 124 LQIIVYKGERGNGVLGVIDGYS 145 (151)
T ss_dssp EEEEEEECSSSEEEEEEEESCC
T ss_pred EEEEEEEcCCCcEEEEEecCCC
Confidence 44555 4589999999999996
No 4
>d1vgga_ d.256.1.1 (A:) Hypothetical protein TT1634 (TTHA1091) {Thermus thermophilus [TaxId: 274]}
Probab=13.91 E-value=57 Score=29.41 Aligned_cols=21 Identities=38% Similarity=0.688 Sum_probs=17.1
Q ss_pred EEEEE-ecCcceEEEEEecCCC
Q 004401 283 VHVVV-SEEHGWLFVGIYDGFN 303 (756)
Q Consensus 283 vhvv~-SEe~gwlFvGIYDGfn 303 (756)
++|+| ..|||+-.+|+-|||.
T Consensus 116 ~eVIvAet~qGrgvlGVvDG~~ 137 (161)
T d1vgga_ 116 LKVVVAEEGEQRAILGVMDGFT 137 (161)
T ss_dssp EEEEEEEETTEEEEEEEEESCC
T ss_pred EEEEEEEcCCCcEEEEEecCCC
Confidence 44555 4599999999999997
No 5
>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=11.92 E-value=63 Score=31.79 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=18.7
Q ss_pred CCCcceeeeeeEECCeEEEEEcc
Q 004401 528 ALMGSCLLVVLMRDEDVYVMNVG 550 (756)
Q Consensus 528 a~mGSTalVvLI~~edLYVANVG 550 (756)
+++|||.+++ ++++.+|+.|+|
T Consensus 143 ~LSGCT~v~A-~K~~~ly~~HtG 164 (295)
T d1hq0a_ 143 NLSGCTTIVA-RKEGYIYKVHTG 164 (295)
T ss_dssp CBSSCEEEEE-EETTEEEEEEEE
T ss_pred cccCcEEEEE-EcCCeEEEEEcc
Confidence 4589888766 689999999999
No 6
>d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=9.26 E-value=31 Score=27.53 Aligned_cols=13 Identities=46% Similarity=1.119 Sum_probs=11.0
Q ss_pred CcceEEEEEecCC
Q 004401 290 EHGWLFVGIYDGF 302 (756)
Q Consensus 290 e~gwlFvGIYDGf 302 (756)
--||-.+|.|||-
T Consensus 46 t~gwsi~~lydgt 58 (86)
T d1prtc2 46 TPGWSIYGLYDGT 58 (86)
T ss_dssp CCTTCEEECSSSE
T ss_pred CCCceEEEEeccc
Confidence 3699999999983
No 7
>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.10 E-value=77 Score=23.04 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=19.6
Q ss_pred CceeecCcCCCceEEEEEecCcceEEEEEecCCCC
Q 004401 270 NVQWALGKAGEDRVHVVVSEEHGWLFVGIYDGFNG 304 (756)
Q Consensus 270 ~~qwa~GkAgEDRvhvv~SEe~gwlFvGIYDGfnG 304 (756)
+|....| |.|.|+-..+.||.++ -++|-.|
T Consensus 17 eLs~~~G----d~i~v~~~~~~~W~~g-~~~g~~G 46 (56)
T d1gcqa_ 17 ELGFRRG----DFIHVMDNSDPNWWKG-ACHGQTG 46 (56)
T ss_dssp BCCBCTT----CEEEEEECCSSSEEEE-EETTEEE
T ss_pred CcCCCCC----CEEEEEEecCCCEEEE-EECCeEE
Confidence 4444444 6888887778899984 5566433
No 8
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.59 E-value=94 Score=24.12 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=15.4
Q ss_pred cceEEEEEecCCCCCChHHHHHHH
Q 004401 291 HGWLFVGIYDGFNGPDAPEFLMGN 314 (756)
Q Consensus 291 ~gwlFvGIYDGfnGpdA~dfL~~~ 314 (756)
.-|+||+ ||. |++.+.++.+
T Consensus 4 ~~wV~V~---G~p-~~~~~~il~~ 23 (81)
T d1wwha1 4 DTWVTVF---GFP-QASASYILLQ 23 (81)
T ss_dssp GGEEEEE---CCC-GGGHHHHHHH
T ss_pred ccEEEEE---CCC-hHHHHHHHHH
Confidence 4599987 885 8999888654
No 9
>d1prtb2 d.169.1.2 (B:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=8.42 E-value=31 Score=27.53 Aligned_cols=13 Identities=38% Similarity=1.038 Sum_probs=11.0
Q ss_pred CcceEEEEEecCC
Q 004401 290 EHGWLFVGIYDGF 302 (756)
Q Consensus 290 e~gwlFvGIYDGf 302 (756)
--||-.+|.|||-
T Consensus 46 t~gwsi~~lydgt 58 (86)
T d1prtb2 46 TRGWSIFALYDGT 58 (86)
T ss_dssp CCSSCEEECSSEE
T ss_pred CCCceEEEEeccc
Confidence 4699999999983
No 10
>d1y0ka1 c.52.1.31 (A:1-209) Hypothetical protein PA4535 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.87 E-value=27 Score=31.62 Aligned_cols=17 Identities=53% Similarity=0.761 Sum_probs=13.2
Q ss_pred CCCCChHHHHHHHHHHH
Q 004401 302 FNGPDAPEFLMGNLYRA 318 (756)
Q Consensus 302 fnGpdA~dfL~~~Ly~~ 318 (756)
|--|||||||..||=+.
T Consensus 184 fah~~apdflr~nlgrs 200 (209)
T d1y0ka1 184 FAHSGAPEFLRANLGRS 200 (209)
T ss_dssp EECTTSCHHHHTTTTCC
T ss_pred hcCCCchHHHHhcCCce
Confidence 34699999999887543
Done!