Query 004404
Match_columns 755
No_of_seqs 724 out of 3652
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 22:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 5.2E-58 1.1E-62 514.4 33.7 440 298-750 106-555 (712)
2 KOG0271 Notchless-like WD40 re 100.0 2.3E-38 4.9E-43 327.1 22.2 322 333-729 109-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 2.7E-37 5.9E-42 319.1 26.7 305 405-751 109-461 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.9E-34 8.6E-39 299.5 23.5 264 422-729 188-458 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 4.5E-34 9.8E-39 299.1 19.8 260 454-751 173-440 (459)
6 KOG0286 G-protein beta subunit 100.0 3.4E-32 7.4E-37 273.7 30.9 273 450-751 49-325 (343)
7 KOG0318 WD40 repeat stress pro 100.0 5.9E-32 1.3E-36 289.3 34.4 386 293-750 104-582 (603)
8 KOG0279 G protein beta subunit 100.0 1.8E-31 3.8E-36 267.2 31.6 280 420-730 27-312 (315)
9 KOG0286 G-protein beta subunit 100.0 2.5E-31 5.4E-36 267.4 30.7 267 423-729 69-343 (343)
10 KOG0319 WD40-repeat-containing 100.0 1.9E-31 4.1E-36 295.1 26.0 408 287-751 60-557 (775)
11 KOG0263 Transcription initiati 100.0 1.8E-30 3.9E-35 290.4 26.5 232 417-729 387-647 (707)
12 KOG0645 WD40 repeat protein [G 100.0 9.3E-31 2E-35 261.1 21.5 292 331-729 6-309 (312)
13 KOG0273 Beta-transducin family 100.0 7.9E-30 1.7E-34 270.2 27.2 331 331-730 170-522 (524)
14 KOG0295 WD40 repeat-containing 100.0 3.6E-30 7.7E-35 265.6 20.3 286 330-729 99-404 (406)
15 KOG0318 WD40 repeat stress pro 100.0 3.1E-28 6.6E-33 260.9 35.7 436 289-751 18-540 (603)
16 KOG0319 WD40-repeat-containing 100.0 9.6E-30 2.1E-34 281.6 24.2 393 317-751 130-599 (775)
17 KOG0315 G-protein beta subunit 100.0 3.9E-28 8.6E-33 239.6 29.7 289 419-749 8-308 (311)
18 KOG0279 G protein beta subunit 100.0 1.4E-28 3E-33 246.5 26.2 254 448-737 7-270 (315)
19 KOG0285 Pleiotropic regulator 100.0 3.1E-29 6.8E-34 257.6 19.7 288 332-729 144-437 (460)
20 KOG0291 WD40-repeat-containing 100.0 2.1E-27 4.6E-32 263.1 35.4 315 421-750 157-529 (893)
21 cd00200 WD40 WD40 domain, foun 100.0 1.1E-26 2.5E-31 239.4 35.1 264 422-729 22-289 (289)
22 KOG0284 Polyadenylation factor 100.0 6.3E-29 1.4E-33 259.4 17.8 277 410-729 98-378 (464)
23 KOG0315 G-protein beta subunit 100.0 2.4E-27 5.2E-32 234.1 26.4 249 469-751 11-268 (311)
24 KOG0306 WD40-repeat-containing 100.0 1.7E-27 3.6E-32 263.7 27.8 259 451-751 368-644 (888)
25 KOG0313 Microtubule binding pr 100.0 7.3E-28 1.6E-32 249.7 23.5 318 328-731 94-418 (423)
26 KOG0295 WD40 repeat-containing 100.0 5.5E-28 1.2E-32 249.5 21.6 262 449-749 101-384 (406)
27 KOG0273 Beta-transducin family 100.0 4.6E-27 9.9E-32 249.3 27.6 288 422-750 192-502 (524)
28 KOG0645 WD40 repeat protein [G 100.0 9.1E-27 2E-31 232.6 28.0 268 446-751 4-290 (312)
29 cd00200 WD40 WD40 domain, foun 100.0 4.3E-26 9.3E-31 235.1 33.2 263 450-751 3-271 (289)
30 KOG0266 WD40 repeat-containing 100.0 9.2E-27 2E-31 264.4 29.5 263 450-751 152-432 (456)
31 KOG0265 U5 snRNP-specific prot 100.0 3.3E-27 7.2E-32 238.7 22.5 268 450-751 41-318 (338)
32 KOG0263 Transcription initiati 100.0 1.8E-27 3.9E-32 266.5 22.2 252 451-751 373-629 (707)
33 KOG0296 Angio-associated migra 100.0 2.9E-26 6.4E-31 236.9 29.2 287 420-751 75-378 (399)
34 KOG0285 Pleiotropic regulator 100.0 4.7E-27 1E-31 241.7 22.6 240 449-729 144-387 (460)
35 KOG0291 WD40-repeat-containing 100.0 5.9E-26 1.3E-30 251.7 32.6 354 330-731 136-550 (893)
36 KOG0284 Polyadenylation factor 100.0 7.6E-28 1.7E-32 251.3 16.0 260 455-752 95-361 (464)
37 KOG0281 Beta-TrCP (transducin 100.0 3.8E-28 8.3E-33 248.5 13.3 276 412-729 198-475 (499)
38 KOG0266 WD40 repeat-containing 99.9 1.9E-25 4.1E-30 253.7 30.3 264 424-729 174-452 (456)
39 KOG0316 Conserved WD40 repeat- 99.9 1.8E-25 3.9E-30 219.2 25.6 261 449-751 10-280 (307)
40 KOG0278 Serine/threonine kinas 99.9 1.9E-26 4.2E-31 227.6 18.7 261 424-729 32-295 (334)
41 KOG0293 WD40 repeat-containing 99.9 4E-26 8.6E-31 238.5 21.7 270 423-731 238-513 (519)
42 KOG1408 WD40 repeat protein [F 99.9 5.9E-25 1.3E-29 241.5 30.9 449 214-751 184-693 (1080)
43 KOG0282 mRNA splicing factor [ 99.9 2.3E-26 4.9E-31 245.1 17.8 281 407-729 210-503 (503)
44 PLN00181 protein SPA1-RELATED; 99.9 1.1E-24 2.5E-29 263.9 35.2 294 430-751 457-773 (793)
45 KOG0276 Vesicle coat complex C 99.9 1E-25 2.2E-30 245.2 22.7 258 452-747 9-275 (794)
46 KOG0265 U5 snRNP-specific prot 99.9 7.2E-25 1.6E-29 221.8 26.9 263 422-727 60-334 (338)
47 KOG0296 Angio-associated migra 99.9 4.1E-25 8.8E-30 228.6 23.8 323 333-730 58-397 (399)
48 PTZ00421 coronin; Provisional 99.9 7.9E-24 1.7E-28 240.7 36.0 230 451-751 70-313 (493)
49 PLN00181 protein SPA1-RELATED; 99.9 7.9E-24 1.7E-28 256.6 38.3 276 421-729 495-791 (793)
50 PTZ00420 coronin; Provisional 99.9 5.1E-24 1.1E-28 243.8 33.3 250 427-751 50-316 (568)
51 KOG0306 WD40-repeat-containing 99.9 3.6E-24 7.9E-29 237.5 30.4 390 299-751 32-602 (888)
52 KOG0313 Microtubule binding pr 99.9 1.2E-24 2.7E-29 225.8 23.6 258 414-750 108-398 (423)
53 KOG0293 WD40 repeat-containing 99.9 9.9E-25 2.1E-29 228.1 22.0 271 445-751 213-492 (519)
54 KOG0276 Vesicle coat complex C 99.9 2.7E-24 5.9E-29 234.2 25.0 265 423-728 27-296 (794)
55 KOG0292 Vesicle coat complex C 99.9 2E-24 4.3E-29 242.4 23.9 258 452-746 5-297 (1202)
56 KOG0275 Conserved WD40 repeat- 99.9 5.8E-25 1.2E-29 223.3 17.2 283 410-729 215-507 (508)
57 KOG0643 Translation initiation 99.9 8.7E-24 1.9E-28 210.8 24.4 285 422-729 23-315 (327)
58 KOG0277 Peroxisomal targeting 99.9 1.9E-24 4.2E-29 214.2 19.1 245 429-752 36-289 (311)
59 KOG0282 mRNA splicing factor [ 99.9 1.1E-24 2.4E-29 232.2 16.1 268 448-752 206-485 (503)
60 KOG0281 Beta-TrCP (transducin 99.9 7.5E-25 1.6E-29 224.4 12.7 248 455-752 196-460 (499)
61 KOG0274 Cdc4 and related F-box 99.9 4.6E-23 1E-27 235.1 28.6 275 413-737 210-490 (537)
62 KOG0305 Anaphase promoting com 99.9 4.3E-23 9.3E-28 228.1 26.9 262 428-731 194-461 (484)
63 KOG0292 Vesicle coat complex C 99.9 5.3E-23 1.2E-27 231.0 27.1 263 422-729 22-319 (1202)
64 KOG0772 Uncharacterized conser 99.9 1.6E-23 3.4E-28 224.2 21.0 284 450-751 161-467 (641)
65 KOG1446 Histone H3 (Lys4) meth 99.9 4.7E-22 1E-26 203.4 29.4 267 450-752 8-286 (311)
66 KOG0277 Peroxisomal targeting 99.9 2.3E-23 4.9E-28 206.6 18.5 241 409-730 61-308 (311)
67 KOG0641 WD40 repeat protein [G 99.9 1.5E-21 3.3E-26 190.3 28.9 253 448-729 81-347 (350)
68 KOG0301 Phospholipase A2-activ 99.9 1.5E-22 3.3E-27 223.5 24.6 257 423-729 27-286 (745)
69 KOG0316 Conserved WD40 repeat- 99.9 2.5E-22 5.4E-27 197.2 23.4 264 422-729 30-297 (307)
70 KOG0643 Translation initiation 99.9 4.6E-22 9.9E-27 198.6 24.3 220 452-751 6-241 (327)
71 KOG0310 Conserved WD40 repeat- 99.9 3.1E-22 6.7E-27 214.0 24.0 256 456-751 26-289 (487)
72 KOG0772 Uncharacterized conser 99.9 4.2E-23 9.2E-28 220.9 17.0 306 333-742 161-504 (641)
73 KOG0640 mRNA cleavage stimulat 99.9 1.2E-22 2.5E-27 206.0 18.4 233 447-740 103-346 (430)
74 KOG0288 WD40 repeat protein Ti 99.9 8E-23 1.7E-27 214.3 17.7 266 421-728 187-458 (459)
75 KOG0299 U3 snoRNP-associated p 99.9 4.3E-22 9.2E-27 211.5 23.4 274 450-750 136-434 (479)
76 KOG2106 Uncharacterized conser 99.9 5.3E-21 1.1E-25 204.5 31.8 371 335-730 100-520 (626)
77 KOG0288 WD40 repeat protein Ti 99.9 4.7E-23 1E-27 216.0 15.5 264 451-751 170-441 (459)
78 KOG1407 WD40 repeat protein [F 99.9 1.4E-21 3.1E-26 194.6 24.6 256 424-723 35-294 (313)
79 KOG0268 Sof1-like rRNA process 99.9 1.2E-22 2.5E-27 210.0 17.0 257 424-729 82-343 (433)
80 KOG0275 Conserved WD40 repeat- 99.9 2.2E-22 4.7E-27 204.7 18.6 264 454-749 211-487 (508)
81 KOG0278 Serine/threonine kinas 99.9 7.6E-23 1.6E-27 202.3 14.5 256 317-684 42-302 (334)
82 KOG0300 WD40 repeat-containing 99.9 5.9E-22 1.3E-26 201.2 20.9 288 407-730 147-475 (481)
83 KOG0310 Conserved WD40 repeat- 99.9 2.4E-21 5.2E-26 207.2 25.1 254 430-729 47-307 (487)
84 KOG0283 WD40 repeat-containing 99.9 1.4E-21 3.1E-26 221.1 23.7 199 450-730 363-575 (712)
85 KOG0264 Nucleosome remodeling 99.9 1.8E-21 3.9E-26 207.0 22.3 253 418-732 134-405 (422)
86 KOG0640 mRNA cleavage stimulat 99.9 1.7E-21 3.7E-26 197.6 20.9 292 405-729 109-424 (430)
87 PTZ00421 coronin; Provisional 99.9 4.2E-20 9E-25 210.4 34.1 213 421-711 88-314 (493)
88 KOG0274 Cdc4 and related F-box 99.9 4.4E-21 9.5E-26 219.0 26.1 250 455-750 207-463 (537)
89 KOG0647 mRNA export protein (c 99.9 6.7E-21 1.5E-25 193.3 23.6 266 454-749 25-301 (347)
90 KOG0299 U3 snoRNP-associated p 99.9 5.2E-21 1.1E-25 203.3 23.7 269 423-728 156-453 (479)
91 KOG0641 WD40 repeat protein [G 99.9 1.2E-19 2.6E-24 177.1 30.1 272 454-754 30-332 (350)
92 PTZ00420 coronin; Provisional 99.9 3.5E-20 7.7E-25 212.3 30.8 213 421-712 87-318 (568)
93 KOG0646 WD40 repeat protein [G 99.9 9.7E-21 2.1E-25 201.6 23.8 301 352-729 11-348 (476)
94 KOG0301 Phospholipase A2-activ 99.9 4.9E-21 1.1E-25 211.6 21.9 278 334-682 9-291 (745)
95 KOG0300 WD40 repeat-containing 99.9 6.7E-21 1.4E-25 193.6 20.9 285 448-750 140-453 (481)
96 KOG1407 WD40 repeat protein [F 99.9 8.8E-21 1.9E-25 189.0 20.7 223 450-750 14-240 (313)
97 KOG0294 WD40 repeat-containing 99.9 3.8E-20 8.2E-25 188.8 25.4 264 424-729 4-279 (362)
98 KOG0264 Nucleosome remodeling 99.9 5.6E-21 1.2E-25 203.2 20.0 233 453-752 121-384 (422)
99 KOG0973 Histone transcription 99.9 1.3E-20 2.8E-25 218.0 24.3 283 454-750 11-334 (942)
100 KOG0289 mRNA splicing factor [ 99.9 3.8E-20 8.3E-25 195.1 25.0 268 421-729 231-504 (506)
101 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.1E-19 1.7E-23 185.9 34.8 280 422-750 2-299 (300)
102 KOG1539 WD repeat protein [Gen 99.9 4.4E-20 9.5E-25 207.5 25.8 383 317-751 185-627 (910)
103 KOG0308 Conserved WD40 repeat- 99.9 1.8E-21 3.9E-26 213.6 14.4 180 560-750 66-264 (735)
104 KOG2096 WD40 repeat protein [G 99.9 4.3E-20 9.2E-25 188.2 22.7 303 432-751 62-383 (420)
105 KOG0973 Histone transcription 99.9 8.6E-20 1.9E-24 211.3 27.9 274 424-729 28-353 (942)
106 KOG0268 Sof1-like rRNA process 99.9 2.4E-21 5.2E-26 200.3 13.3 239 450-730 60-301 (433)
107 KOG0289 mRNA splicing factor [ 99.9 7.4E-20 1.6E-24 193.0 24.7 256 457-749 220-484 (506)
108 KOG0269 WD40 repeat-containing 99.9 7.9E-21 1.7E-25 212.1 18.1 219 458-750 89-318 (839)
109 KOG1408 WD40 repeat protein [F 99.9 6.5E-20 1.4E-24 202.2 24.6 269 424-729 395-711 (1080)
110 KOG1063 RNA polymerase II elon 99.9 1.2E-19 2.6E-24 200.6 26.6 405 333-751 185-733 (764)
111 KOG1332 Vesicle coat complex C 99.9 2.8E-20 6.1E-25 183.8 19.5 232 422-729 24-284 (299)
112 KOG1539 WD repeat protein [Gen 99.8 2E-19 4.4E-24 202.2 26.7 365 319-731 229-648 (910)
113 KOG1446 Histone H3 (Lys4) meth 99.8 2.2E-19 4.7E-24 183.9 24.2 271 341-729 16-301 (311)
114 KOG1036 Mitotic spindle checkp 99.8 2.7E-19 6E-24 182.4 23.6 262 455-750 12-283 (323)
115 KOG0305 Anaphase promoting com 99.8 2.2E-19 4.8E-24 198.8 24.5 225 422-681 230-463 (484)
116 KOG0302 Ribosome Assembly prot 99.8 6.6E-20 1.4E-24 190.6 18.5 218 453-729 148-376 (440)
117 KOG0646 WD40 repeat protein [G 99.8 1.1E-19 2.3E-24 193.7 20.6 255 423-752 53-330 (476)
118 KOG1063 RNA polymerase II elon 99.8 9.1E-19 2E-23 193.7 26.6 354 342-753 148-630 (764)
119 KOG0308 Conserved WD40 repeat- 99.8 1.3E-19 2.9E-24 199.0 18.4 280 422-729 38-325 (735)
120 KOG2096 WD40 repeat protein [G 99.8 5.6E-19 1.2E-23 180.1 21.6 295 327-729 74-400 (420)
121 KOG0321 WD40 repeat-containing 99.8 2.9E-19 6.4E-24 196.0 20.5 300 418-729 61-389 (720)
122 KOG1332 Vesicle coat complex C 99.8 1.3E-19 2.7E-24 179.3 15.7 226 453-751 8-266 (299)
123 KOG0302 Ribosome Assembly prot 99.8 3.5E-19 7.6E-24 185.3 19.0 235 421-723 165-431 (440)
124 KOG0294 WD40 repeat-containing 99.8 5.3E-19 1.2E-23 180.4 17.7 270 324-657 28-305 (362)
125 KOG0639 Transducin-like enhanc 99.8 3.9E-19 8.4E-24 189.9 17.3 241 454-730 417-662 (705)
126 KOG0267 Microtubule severing p 99.8 2.7E-20 5.9E-25 206.3 8.8 221 451-751 23-248 (825)
127 KOG0269 WD40 repeat-containing 99.8 1.7E-19 3.6E-24 201.6 15.0 228 420-727 99-336 (839)
128 KOG0639 Transducin-like enhanc 99.8 1E-18 2.3E-23 186.6 20.1 269 422-729 432-702 (705)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.8E-17 8.3E-22 173.1 31.1 283 351-710 4-300 (300)
130 KOG2445 Nuclear pore complex c 99.8 1.1E-17 2.3E-22 170.5 25.3 254 422-740 26-332 (361)
131 KOG1274 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 190.1 26.1 242 453-731 10-262 (933)
132 KOG0267 Microtubule severing p 99.8 1.6E-19 3.5E-24 200.3 10.5 214 422-720 41-257 (825)
133 KOG2055 WD40 repeat protein [G 99.8 1.3E-17 2.7E-22 177.6 23.9 272 421-729 225-510 (514)
134 KOG1274 WD40 repeat protein [G 99.8 2.3E-17 5.1E-22 187.7 27.3 259 422-728 26-297 (933)
135 KOG0650 WD40 repeat nucleolar 99.8 7.1E-19 1.5E-23 191.6 12.7 317 333-728 394-732 (733)
136 KOG0647 mRNA export protein (c 99.8 5.4E-17 1.2E-21 165.1 25.4 257 422-722 41-315 (347)
137 KOG4283 Transcription-coupled 99.8 4.6E-17 1E-21 164.7 24.6 268 421-730 56-364 (397)
138 KOG4283 Transcription-coupled 99.8 3.7E-17 8.1E-22 165.4 23.7 271 453-751 40-345 (397)
139 KOG4378 Nuclear protein COP1 [ 99.8 4.8E-18 1E-22 181.5 18.2 252 422-711 48-304 (673)
140 KOG0650 WD40 repeat nucleolar 99.8 1.1E-17 2.4E-22 182.4 21.1 284 450-750 394-714 (733)
141 KOG0270 WD40 repeat-containing 99.8 1.4E-17 3.1E-22 176.7 19.9 232 421-730 192-448 (463)
142 KOG0303 Actin-binding protein 99.8 3E-17 6.5E-22 171.7 21.9 208 452-729 77-292 (472)
143 KOG2048 WD40 repeat protein [G 99.8 3.6E-16 7.8E-21 173.2 30.4 265 449-751 18-301 (691)
144 KOG2445 Nuclear pore complex c 99.8 1.5E-16 3.2E-21 162.3 25.0 227 453-750 10-297 (361)
145 KOG2106 Uncharacterized conser 99.8 8.5E-16 1.8E-20 165.0 30.2 281 425-750 174-500 (626)
146 KOG4378 Nuclear protein COP1 [ 99.8 7.9E-17 1.7E-21 172.3 22.0 285 426-751 7-303 (673)
147 KOG0270 WD40 repeat-containing 99.7 1.8E-17 3.8E-22 176.0 14.9 158 563-729 239-402 (463)
148 KOG1036 Mitotic spindle checkp 99.7 9.2E-16 2E-20 156.8 25.5 253 421-721 25-294 (323)
149 KOG2048 WD40 repeat protein [G 99.7 1.7E-15 3.6E-20 168.0 29.3 276 414-729 30-317 (691)
150 KOG4328 WD40 protein [Function 99.7 1.7E-16 3.7E-21 168.9 20.5 270 422-729 201-493 (498)
151 KOG1034 Transcriptional repres 99.7 6.6E-16 1.4E-20 158.7 22.1 248 452-729 34-381 (385)
152 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-16 2.5E-21 174.1 17.0 255 418-742 303-574 (577)
153 KOG2055 WD40 repeat protein [G 99.7 4.9E-16 1.1E-20 165.6 20.7 265 456-751 213-492 (514)
154 KOG0307 Vesicle coat complex C 99.7 3E-17 6.5E-22 191.1 12.4 267 461-751 11-306 (1049)
155 KOG0307 Vesicle coat complex C 99.7 5.7E-17 1.2E-21 188.7 13.6 232 422-729 81-325 (1049)
156 KOG4328 WD40 protein [Function 99.7 2.7E-16 5.8E-21 167.5 16.6 211 448-730 178-398 (498)
157 KOG1273 WD40 repeat protein [G 99.7 1.4E-15 3.1E-20 155.3 20.2 196 459-732 26-227 (405)
158 KOG1009 Chromatin assembly com 99.7 8.9E-16 1.9E-20 161.6 18.1 170 418-641 23-198 (434)
159 COG2319 FOG: WD40 repeat [Gene 99.7 1E-13 2.2E-18 149.7 34.5 259 452-749 61-336 (466)
160 KOG1188 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 157.4 18.3 276 422-729 41-344 (376)
161 KOG1445 Tumor-specific antigen 99.7 6.1E-15 1.3E-19 161.4 23.5 154 569-730 629-797 (1012)
162 KOG1538 Uncharacterized conser 99.7 5.5E-15 1.2E-19 162.5 22.9 252 430-729 32-291 (1081)
163 KOG1273 WD40 repeat protein [G 99.7 7.2E-15 1.6E-19 150.2 21.4 250 422-749 36-301 (405)
164 KOG2919 Guanine nucleotide-bin 99.6 9E-15 1.9E-19 150.0 20.2 262 459-752 52-351 (406)
165 KOG1007 WD repeat protein TSSC 99.6 1.1E-14 2.3E-19 147.4 19.9 283 429-730 38-360 (370)
166 KOG0649 WD40 repeat protein [G 99.6 5.4E-14 1.2E-18 139.4 23.4 254 417-746 18-290 (325)
167 KOG0321 WD40 repeat-containing 99.6 1.2E-14 2.7E-19 160.0 20.0 259 460-751 53-370 (720)
168 COG2319 FOG: WD40 repeat [Gene 99.6 2.9E-12 6.2E-17 138.3 38.2 268 421-730 77-358 (466)
169 KOG0303 Actin-binding protein 99.6 4.2E-15 9.1E-20 155.8 14.1 159 561-730 75-248 (472)
170 KOG1445 Tumor-specific antigen 99.6 2.1E-14 4.5E-19 157.3 18.0 242 428-742 600-858 (1012)
171 KOG0322 G-protein beta subunit 99.6 4E-14 8.6E-19 142.0 18.5 277 420-729 24-321 (323)
172 PRK01742 tolB translocation pr 99.6 8.8E-14 1.9E-18 157.3 22.9 232 429-753 182-427 (429)
173 KOG2919 Guanine nucleotide-bin 99.6 1.6E-13 3.5E-18 140.9 21.4 270 424-721 64-360 (406)
174 KOG4227 WD40 repeat protein [G 99.6 6.9E-14 1.5E-18 146.1 18.6 257 448-729 48-385 (609)
175 KOG1538 Uncharacterized conser 99.6 4E-14 8.7E-19 155.8 17.5 267 341-679 14-293 (1081)
176 KOG0290 Conserved WD40 repeat- 99.6 1.3E-13 2.9E-18 139.8 19.5 158 565-730 148-317 (364)
177 KOG1587 Cytoplasmic dynein int 99.6 3.2E-13 6.9E-18 153.9 23.8 277 431-733 222-518 (555)
178 KOG0642 Cell-cycle nuclear pro 99.5 2.1E-14 4.5E-19 156.7 11.8 236 451-751 289-541 (577)
179 KOG1007 WD repeat protein TSSC 99.5 4.2E-13 9.2E-18 136.0 20.0 224 432-679 94-361 (370)
180 KOG1587 Cytoplasmic dynein int 99.5 3.8E-13 8.2E-18 153.3 22.1 255 411-681 245-518 (555)
181 KOG1009 Chromatin assembly com 99.5 2.8E-13 6.1E-18 142.9 19.1 237 456-754 13-295 (434)
182 KOG0771 Prolactin regulatory e 99.5 9.5E-14 2.1E-18 147.4 15.3 190 460-729 148-352 (398)
183 KOG0644 Uncharacterized conser 99.5 2.3E-14 4.9E-19 161.4 11.1 288 329-685 180-474 (1113)
184 KOG1034 Transcriptional repres 99.5 1.1E-13 2.5E-18 142.4 14.5 248 420-679 104-383 (385)
185 PRK03629 tolB translocation pr 99.5 3.7E-12 8E-17 144.1 27.9 235 430-753 178-429 (429)
186 KOG0644 Uncharacterized conser 99.5 3E-14 6.4E-19 160.5 10.5 247 449-741 183-439 (1113)
187 KOG1334 WD40 repeat protein [G 99.5 7.7E-14 1.7E-18 149.8 12.8 275 450-749 136-444 (559)
188 PRK11028 6-phosphogluconolacto 99.5 1.1E-11 2.3E-16 135.2 29.3 273 424-729 5-302 (330)
189 KOG1523 Actin-related protein 99.5 1.3E-12 2.8E-17 134.4 19.9 207 455-729 9-234 (361)
190 KOG1517 Guanine nucleotide bin 99.5 1.7E-12 3.8E-17 149.7 22.7 285 413-729 1069-1379(1387)
191 KOG1310 WD40 repeat protein [G 99.5 2.8E-13 6.1E-18 146.9 14.1 215 446-729 40-301 (758)
192 KOG1517 Guanine nucleotide bin 99.5 3.4E-12 7.4E-17 147.3 23.4 278 455-751 1063-1361(1387)
193 KOG1524 WD40 repeat-containing 99.5 1.3E-12 2.9E-17 141.4 16.9 207 421-728 75-283 (737)
194 KOG0290 Conserved WD40 repeat- 99.5 2.5E-12 5.4E-17 130.7 17.6 198 454-721 148-356 (364)
195 KOG2110 Uncharacterized conser 99.5 2.1E-11 4.5E-16 127.8 24.9 233 456-729 5-246 (391)
196 PRK04922 tolB translocation pr 99.5 1.1E-11 2.5E-16 140.3 25.0 232 431-751 184-432 (433)
197 KOG1963 WD40 repeat protein [G 99.4 4.1E-11 8.8E-16 137.3 28.3 292 418-730 214-537 (792)
198 PRK05137 tolB translocation pr 99.4 3.3E-11 7.2E-16 136.7 27.8 234 430-752 181-433 (435)
199 KOG1963 WD40 repeat protein [G 99.4 1.7E-11 3.7E-16 140.4 24.2 273 427-729 33-320 (792)
200 KOG1272 WD40-repeat-containing 99.4 7.5E-13 1.6E-17 141.6 10.3 249 459-752 132-390 (545)
201 KOG2321 WD40 repeat protein [G 99.4 1.4E-11 3.1E-16 134.7 20.2 262 449-751 45-323 (703)
202 KOG2394 WD40 protein DMR-N9 [G 99.4 1E-11 2.2E-16 135.1 17.4 193 424-659 188-384 (636)
203 KOG2139 WD40 repeat protein [G 99.4 4E-11 8.7E-16 125.1 21.0 233 424-721 113-365 (445)
204 KOG0322 G-protein beta subunit 99.4 7.4E-12 1.6E-16 125.8 14.6 165 454-678 148-322 (323)
205 PRK02889 tolB translocation pr 99.4 1.4E-10 2.9E-15 131.3 26.6 235 430-753 175-426 (427)
206 KOG1334 WD40 repeat protein [G 99.4 3.5E-12 7.7E-17 137.2 12.2 292 332-730 135-465 (559)
207 KOG1523 Actin-related protein 99.4 4.1E-11 9E-16 123.5 19.3 222 424-725 25-272 (361)
208 KOG0649 WD40 repeat protein [G 99.3 8.9E-11 1.9E-15 116.8 20.2 216 457-738 11-244 (325)
209 KOG1188 WD40 repeat protein [G 99.3 1.8E-11 3.9E-16 127.0 15.9 257 469-749 41-324 (376)
210 KOG1240 Protein kinase contain 99.3 4.5E-11 9.7E-16 140.3 20.7 264 449-729 1041-1332(1431)
211 KOG1409 Uncharacterized conser 99.3 1.3E-10 2.9E-15 120.7 20.7 343 329-735 14-398 (404)
212 KOG2394 WD40 protein DMR-N9 [G 99.3 1.2E-11 2.5E-16 134.5 13.6 165 580-754 187-387 (636)
213 PF08662 eIF2A: Eukaryotic tra 99.3 2.3E-10 5E-15 115.3 21.0 135 589-738 38-187 (194)
214 TIGR02800 propeller_TolB tol-p 99.3 5E-10 1.1E-14 125.9 25.9 223 430-741 169-408 (417)
215 KOG2110 Uncharacterized conser 99.3 3.3E-09 7.3E-14 111.5 29.7 181 426-682 63-251 (391)
216 KOG1524 WD40 repeat-containing 99.3 2.4E-11 5.2E-16 131.8 14.1 159 552-726 89-250 (737)
217 PRK11028 6-phosphogluconolacto 99.3 1.3E-09 2.8E-14 118.8 28.0 229 471-729 5-256 (330)
218 PRK01742 tolB translocation pr 99.3 1.5E-10 3.2E-15 131.2 21.0 207 417-711 212-426 (429)
219 KOG1240 Protein kinase contain 99.3 5.9E-10 1.3E-14 131.1 25.7 293 417-729 1057-1431(1431)
220 KOG4497 Uncharacterized conser 99.3 2.8E-10 6E-15 117.5 19.7 262 418-729 58-389 (447)
221 KOG0771 Prolactin regulatory e 99.3 7.3E-11 1.6E-15 125.7 15.7 194 418-639 153-355 (398)
222 KOG3881 Uncharacterized conser 99.3 2.7E-10 5.8E-15 120.3 18.9 246 454-730 53-319 (412)
223 PRK04792 tolB translocation pr 99.2 1.9E-09 4.1E-14 122.7 26.7 169 572-752 266-447 (448)
224 PRK00178 tolB translocation pr 99.2 2.6E-09 5.6E-14 121.0 27.7 234 432-753 180-429 (430)
225 KOG1310 WD40 repeat protein [G 99.2 2.1E-11 4.5E-16 132.6 9.8 171 559-729 42-229 (758)
226 PF08662 eIF2A: Eukaryotic tra 99.2 8.8E-10 1.9E-14 111.1 20.9 114 567-685 59-184 (194)
227 KOG3881 Uncharacterized conser 99.2 1.2E-09 2.6E-14 115.5 20.9 219 420-711 114-342 (412)
228 PF02239 Cytochrom_D1: Cytochr 99.2 6.6E-09 1.4E-13 115.0 27.0 283 418-738 46-356 (369)
229 KOG4227 WD40 repeat protein [G 99.2 2.2E-10 4.8E-15 120.2 13.9 162 561-729 50-223 (609)
230 KOG2111 Uncharacterized conser 99.2 6E-09 1.3E-13 107.7 23.7 164 554-729 82-254 (346)
231 KOG2321 WD40 repeat protein [G 99.2 3E-09 6.5E-14 116.8 22.2 269 410-728 53-340 (703)
232 KOG0280 Uncharacterized conser 99.1 2.7E-09 5.8E-14 109.2 18.8 274 429-729 44-331 (339)
233 KOG4547 WD40 repeat-containing 99.1 1.4E-09 3.1E-14 120.3 18.1 139 579-729 71-218 (541)
234 PRK03629 tolB translocation pr 99.1 9E-09 2E-13 116.6 25.2 210 413-710 203-427 (429)
235 KOG2111 Uncharacterized conser 99.1 4.8E-08 1E-12 101.2 27.0 177 430-639 74-257 (346)
236 KOG2139 WD40 repeat protein [G 99.1 3.8E-09 8.3E-14 110.6 17.8 147 568-725 141-305 (445)
237 KOG1272 WD40-repeat-containing 99.1 1.9E-10 4.1E-15 123.4 8.3 189 508-731 134-323 (545)
238 KOG1354 Serine/threonine prote 99.1 8.2E-09 1.8E-13 107.5 19.3 274 419-729 35-357 (433)
239 PRK05137 tolB translocation pr 99.1 1.7E-08 3.8E-13 114.5 22.8 166 552-729 186-364 (435)
240 KOG2315 Predicted translation 99.0 8E-08 1.7E-12 106.0 26.5 299 425-752 49-411 (566)
241 KOG1064 RAVE (regulator of V-A 99.0 9.8E-10 2.1E-14 132.9 12.7 198 453-689 2205-2408(2439)
242 PRK02889 tolB translocation pr 99.0 3.4E-08 7.4E-13 111.9 23.3 211 414-710 201-424 (427)
243 PRK04922 tolB translocation pr 99.0 2.7E-08 5.9E-13 112.9 21.3 166 552-729 188-366 (433)
244 PRK01029 tolB translocation pr 99.0 1.6E-07 3.4E-12 106.4 26.6 172 571-753 234-426 (428)
245 KOG0974 WD-repeat protein WDR6 99.0 9.7E-09 2.1E-13 119.9 15.9 201 456-682 87-291 (967)
246 KOG4497 Uncharacterized conser 98.9 3.2E-08 7E-13 102.5 17.5 259 410-723 93-424 (447)
247 KOG2041 WD40 repeat protein [G 98.9 6.7E-08 1.5E-12 108.3 20.8 290 421-749 26-365 (1189)
248 TIGR02800 propeller_TolB tol-p 98.9 9.7E-08 2.1E-12 107.4 22.1 164 555-730 177-353 (417)
249 KOG1354 Serine/threonine prote 98.9 2.6E-08 5.7E-13 103.8 15.5 228 456-741 25-314 (433)
250 PF10282 Lactonase: Lactonase, 98.9 7.4E-06 1.6E-10 90.2 35.0 275 431-729 13-320 (345)
251 KOG4547 WD40 repeat-containing 98.8 5.2E-07 1.1E-11 100.3 23.5 114 564-680 99-221 (541)
252 PRK01029 tolB translocation pr 98.8 8.5E-07 1.9E-11 100.4 25.1 131 570-711 283-425 (428)
253 KOG1409 Uncharacterized conser 98.8 8.4E-08 1.8E-12 100.2 14.3 247 449-729 17-268 (404)
254 PRK00178 tolB translocation pr 98.7 7.8E-07 1.7E-11 100.8 22.1 165 553-729 184-361 (430)
255 TIGR02658 TTQ_MADH_Hv methylam 98.7 3.4E-05 7.3E-10 84.4 33.7 261 431-737 27-338 (352)
256 COG2706 3-carboxymuconate cycl 98.7 2E-05 4.4E-10 83.6 30.1 266 430-729 15-319 (346)
257 KOG0280 Uncharacterized conser 98.7 9.8E-07 2.1E-11 90.7 18.6 170 570-749 124-309 (339)
258 KOG2041 WD40 repeat protein [G 98.7 2.5E-07 5.4E-12 103.8 15.0 238 456-749 14-316 (1189)
259 KOG0309 Conserved WD40 repeat- 98.7 5.1E-08 1.1E-12 109.8 9.3 237 429-735 89-343 (1081)
260 PLN02919 haloacid dehalogenase 98.7 1.2E-05 2.7E-10 100.2 31.1 159 570-730 685-887 (1057)
261 KOG4190 Uncharacterized conser 98.7 2.8E-08 6E-13 108.4 6.5 175 449-687 728-914 (1034)
262 PF02239 Cytochrom_D1: Cytochr 98.7 4.4E-06 9.6E-11 92.6 23.7 172 556-736 25-209 (369)
263 KOG0974 WD-repeat protein WDR6 98.6 5.3E-07 1.1E-11 105.7 16.8 160 578-749 99-266 (967)
264 TIGR02658 TTQ_MADH_Hv methylam 98.6 1.4E-05 3.1E-10 87.3 27.0 234 427-687 73-338 (352)
265 PF10282 Lactonase: Lactonase, 98.6 0.00011 2.3E-09 81.1 34.0 236 429-686 60-331 (345)
266 PRK04792 tolB translocation pr 98.6 1.9E-06 4E-11 98.3 20.7 165 554-729 204-380 (448)
267 KOG3914 WD repeat protein WDR4 98.6 7.3E-07 1.6E-11 95.2 14.2 155 572-737 67-231 (390)
268 COG5170 CDC55 Serine/threonine 98.6 7.8E-07 1.7E-11 91.8 12.9 279 421-729 38-365 (460)
269 KOG2314 Translation initiation 98.5 1.4E-05 3E-10 88.3 23.0 263 427-729 278-571 (698)
270 PLN02919 haloacid dehalogenase 98.5 3.5E-05 7.6E-10 96.2 29.8 254 420-683 579-892 (1057)
271 COG4946 Uncharacterized protei 98.5 6.4E-05 1.4E-09 81.8 26.6 215 417-665 275-504 (668)
272 PRK04043 tolB translocation pr 98.5 6.2E-05 1.3E-09 85.0 28.1 156 570-739 235-409 (419)
273 COG5170 CDC55 Serine/threonine 98.5 1.2E-06 2.6E-11 90.4 12.7 230 455-741 25-322 (460)
274 KOG3914 WD repeat protein WDR4 98.5 8.3E-07 1.8E-11 94.8 12.0 88 558-647 142-232 (390)
275 KOG2315 Predicted translation 98.5 2.2E-05 4.8E-10 87.1 22.7 227 429-683 144-394 (566)
276 TIGR03300 assembly_YfgL outer 98.5 9.3E-05 2E-09 82.3 28.5 270 422-742 66-351 (377)
277 PF04762 IKI3: IKI3 family; I 98.5 5.9E-05 1.3E-09 92.6 29.0 244 455-729 119-377 (928)
278 TIGR03300 assembly_YfgL outer 98.4 6.3E-05 1.4E-09 83.6 25.5 134 578-728 241-376 (377)
279 KOG4714 Nucleoporin [Nuclear s 98.4 2.7E-06 5.9E-11 86.2 11.0 107 569-677 181-316 (319)
280 PF00400 WD40: WD domain, G-be 98.4 1.3E-06 2.8E-11 63.7 6.6 37 448-484 3-39 (39)
281 PF08450 SGL: SMP-30/Gluconola 98.3 0.0005 1.1E-08 71.7 28.0 174 570-750 42-233 (246)
282 KOG4190 Uncharacterized conser 98.3 3.8E-06 8.2E-11 92.1 11.7 288 332-675 728-1032(1034)
283 KOG1064 RAVE (regulator of V-A 98.3 2.2E-06 4.7E-11 104.9 10.0 164 563-738 2204-2375(2439)
284 KOG2314 Translation initiation 98.3 7.7E-05 1.7E-09 82.6 21.0 242 454-730 248-524 (698)
285 KOG0309 Conserved WD40 repeat- 98.3 2.5E-06 5.5E-11 96.5 9.6 175 570-752 70-256 (1081)
286 COG4946 Uncharacterized protei 98.3 0.00038 8.2E-09 76.0 25.5 143 574-729 328-475 (668)
287 KOG4532 WD40-like repeat conta 98.2 0.00011 2.4E-09 75.0 19.6 149 570-722 161-323 (344)
288 KOG1912 WD40 repeat protein [G 98.2 6.2E-05 1.4E-09 86.1 19.4 220 430-732 34-305 (1062)
289 COG5354 Uncharacterized protei 98.2 0.00026 5.5E-09 78.1 23.4 254 430-729 52-346 (561)
290 PF15492 Nbas_N: Neuroblastoma 98.2 0.00047 1E-08 71.5 24.1 207 461-688 2-268 (282)
291 COG5354 Uncharacterized protei 98.2 0.00039 8.5E-09 76.6 24.5 261 431-729 108-393 (561)
292 PF08450 SGL: SMP-30/Gluconola 98.2 0.0021 4.7E-08 67.0 29.2 139 569-719 87-244 (246)
293 KOG2695 WD40 repeat protein [G 98.1 7.5E-06 1.6E-10 85.9 8.3 139 566-709 251-401 (425)
294 PRK04043 tolB translocation pr 98.1 0.00054 1.2E-08 77.5 23.6 160 556-729 177-355 (419)
295 KOG2695 WD40 repeat protein [G 98.0 8.2E-06 1.8E-10 85.6 6.9 158 574-740 218-387 (425)
296 PF04762 IKI3: IKI3 family; I 98.0 0.00085 1.8E-08 82.7 25.5 247 455-729 208-517 (928)
297 PF13360 PQQ_2: PQQ-like domai 98.0 0.0013 2.8E-08 67.6 23.1 138 578-730 76-229 (238)
298 PF00400 WD40: WD domain, G-be 98.0 1.2E-05 2.6E-10 58.5 5.5 37 558-594 2-39 (39)
299 COG2706 3-carboxymuconate cycl 98.0 0.0027 5.9E-08 67.7 25.1 231 477-729 15-272 (346)
300 KOG1832 HIV-1 Vpr-binding prot 98.0 3.6E-06 7.9E-11 96.7 3.8 200 448-688 1093-1300(1516)
301 PF07433 DUF1513: Protein of u 98.0 0.0031 6.7E-08 67.2 25.2 229 425-675 22-281 (305)
302 KOG0882 Cyclophilin-related pe 98.0 7.4E-05 1.6E-09 81.0 12.6 240 421-687 20-313 (558)
303 KOG4532 WD40-like repeat conta 97.9 0.00064 1.4E-08 69.6 18.1 146 579-730 129-281 (344)
304 PRK11138 outer membrane biogen 97.9 0.0053 1.1E-07 68.9 27.1 134 578-729 256-392 (394)
305 PRK11138 outer membrane biogen 97.8 0.0077 1.7E-07 67.6 26.9 148 579-740 206-364 (394)
306 KOG1920 IkappaB kinase complex 97.8 0.0023 5.1E-08 77.1 22.9 258 455-729 67-363 (1265)
307 PF15492 Nbas_N: Neuroblastoma 97.8 0.0018 4E-08 67.2 19.4 169 569-739 45-269 (282)
308 PF11768 DUF3312: Protein of u 97.8 0.0084 1.8E-07 68.0 25.9 143 568-712 206-369 (545)
309 KOG4714 Nucleoporin [Nuclear s 97.8 5.3E-05 1.1E-09 77.1 7.7 149 577-735 100-259 (319)
310 PF11768 DUF3312: Protein of u 97.8 0.00096 2.1E-08 75.4 18.3 112 606-729 204-327 (545)
311 KOG2066 Vacuolar assembly/sort 97.8 0.00081 1.8E-08 77.8 17.5 140 579-729 84-231 (846)
312 KOG2114 Vacuolar assembly/sort 97.8 0.0027 5.9E-08 74.1 21.8 212 413-688 27-252 (933)
313 PF06433 Me-amine-dh_H: Methyl 97.8 0.012 2.6E-07 63.5 25.2 271 431-742 17-333 (342)
314 KOG2114 Vacuolar assembly/sort 97.8 0.004 8.7E-08 72.8 22.6 160 579-749 78-264 (933)
315 KOG1275 PAB-dependent poly(A) 97.7 0.00047 1E-08 80.5 15.1 119 558-677 208-340 (1118)
316 KOG2066 Vacuolar assembly/sort 97.7 0.00017 3.7E-09 83.3 10.9 141 569-730 41-186 (846)
317 KOG1912 WD40 repeat protein [G 97.7 0.00065 1.4E-08 78.1 15.0 151 569-729 17-184 (1062)
318 PF07433 DUF1513: Protein of u 97.6 0.024 5.2E-07 60.5 25.0 234 460-729 8-283 (305)
319 KOG0882 Cyclophilin-related pe 97.6 0.00035 7.5E-09 75.9 10.3 215 455-738 8-240 (558)
320 KOG3617 WD40 and TPR repeat-co 97.5 0.0023 5E-08 74.2 16.1 268 422-721 72-375 (1416)
321 PRK02888 nitrous-oxide reducta 97.4 0.0079 1.7E-07 69.7 19.6 143 587-732 214-405 (635)
322 KOG1275 PAB-dependent poly(A) 97.4 0.0017 3.7E-08 76.1 13.9 150 568-729 178-340 (1118)
323 KOG1645 RING-finger-containing 97.3 0.0021 4.4E-08 69.3 12.3 84 558-641 184-269 (463)
324 PF04053 Coatomer_WDAD: Coatom 97.3 0.011 2.5E-07 66.9 18.6 100 572-678 73-172 (443)
325 PF08596 Lgl_C: Lethal giant l 97.3 0.11 2.4E-06 58.3 26.0 237 458-730 3-289 (395)
326 KOG1008 Uncharacterized conser 97.3 0.00018 3.8E-09 81.2 3.6 242 421-730 70-334 (783)
327 PF13360 PQQ_2: PQQ-like domai 97.3 0.0058 1.2E-07 62.8 14.6 146 587-741 2-152 (238)
328 PF03178 CPSF_A: CPSF A subuni 97.2 0.045 9.8E-07 59.5 21.6 158 566-728 87-262 (321)
329 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.14 3.1E-06 56.5 25.4 275 430-721 22-348 (353)
330 PRK02888 nitrous-oxide reducta 97.1 0.079 1.7E-06 61.6 22.9 94 586-680 294-405 (635)
331 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.032 6.9E-07 50.6 15.0 100 570-675 2-110 (111)
332 smart00320 WD40 WD40 repeats. 97.0 0.0017 3.6E-08 44.6 5.6 35 450-484 6-40 (40)
333 cd00216 PQQ_DH Dehydrogenases 97.0 0.22 4.8E-06 57.6 26.1 153 579-739 229-434 (488)
334 PF00780 CNH: CNH domain; Int 97.0 0.55 1.2E-05 49.6 27.3 144 579-742 105-268 (275)
335 KOG1832 HIV-1 Vpr-binding prot 97.0 0.00047 1E-08 80.0 3.6 157 558-729 1092-1253(1516)
336 PF06977 SdiA-regulated: SdiA- 97.0 0.16 3.4E-06 53.3 21.9 209 450-676 15-247 (248)
337 KOG1645 RING-finger-containing 96.9 0.0024 5.3E-08 68.8 7.2 93 590-682 175-269 (463)
338 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.067 1.5E-06 48.5 15.2 102 610-726 2-109 (111)
339 KOG3621 WD40 repeat-containing 96.8 0.0046 9.9E-08 71.0 9.4 119 606-729 32-152 (726)
340 KOG4640 Anaphase-promoting com 96.8 0.0052 1.1E-07 69.8 9.5 96 606-710 19-115 (665)
341 COG3391 Uncharacterized conser 96.8 0.6 1.3E-05 52.3 26.0 174 570-753 118-310 (381)
342 PF06977 SdiA-regulated: SdiA- 96.7 0.13 2.8E-06 53.9 18.6 173 562-738 16-209 (248)
343 KOG3617 WD40 and TPR repeat-co 96.7 0.067 1.4E-06 62.6 17.2 108 459-596 18-131 (1416)
344 KOG1920 IkappaB kinase complex 96.6 0.069 1.5E-06 65.0 17.6 150 568-729 69-272 (1265)
345 cd00216 PQQ_DH Dehydrogenases 96.6 0.58 1.3E-05 54.1 25.0 104 580-688 303-433 (488)
346 KOG3621 WD40 repeat-containing 96.6 0.01 2.2E-07 68.3 9.9 127 578-710 45-180 (726)
347 PF04841 Vps16_N: Vps16, N-ter 96.6 0.61 1.3E-05 52.7 24.4 86 615-712 186-271 (410)
348 KOG4640 Anaphase-promoting com 96.5 0.01 2.2E-07 67.6 9.5 90 568-659 21-115 (665)
349 COG3386 Gluconolactonase [Carb 96.5 0.64 1.4E-05 50.3 22.6 226 418-668 34-274 (307)
350 PF05096 Glu_cyclase_2: Glutam 96.4 0.92 2E-05 47.7 22.6 190 458-719 46-249 (264)
351 PF08553 VID27: VID27 cytoplas 96.4 0.064 1.4E-06 64.4 15.5 133 585-729 501-645 (794)
352 smart00320 WD40 WD40 repeats. 96.3 0.0086 1.9E-07 40.8 5.1 37 558-594 3-40 (40)
353 PF00780 CNH: CNH domain; Int 96.3 0.76 1.6E-05 48.5 21.8 113 570-686 38-172 (275)
354 COG0823 TolB Periplasmic compo 96.3 0.2 4.4E-06 56.7 18.2 109 572-682 242-361 (425)
355 COG0823 TolB Periplasmic compo 96.2 0.098 2.1E-06 59.2 15.5 160 559-729 184-356 (425)
356 PF03178 CPSF_A: CPSF A subuni 96.2 0.53 1.2E-05 51.1 20.7 106 569-676 131-262 (321)
357 KOG1008 Uncharacterized conser 96.1 0.0014 3E-08 74.2 0.1 151 569-730 58-224 (783)
358 PF14583 Pectate_lyase22: Olig 96.0 2.6 5.6E-05 46.7 24.3 297 417-728 44-378 (386)
359 PF08553 VID27: VID27 cytoplas 95.9 1.4 3.1E-05 53.2 23.9 124 552-678 509-646 (794)
360 KOG1897 Damage-specific DNA bi 95.9 3.7 8.1E-05 49.7 26.6 157 581-750 687-877 (1096)
361 PF04841 Vps16_N: Vps16, N-ter 95.9 2.6 5.6E-05 47.7 24.9 172 551-740 64-257 (410)
362 COG3490 Uncharacterized protei 95.9 0.42 9.1E-06 50.1 16.5 226 431-677 91-346 (366)
363 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.8 2.6 5.7E-05 49.2 25.3 59 630-688 441-499 (527)
364 PF04053 Coatomer_WDAD: Coatom 95.8 0.17 3.7E-06 57.6 14.9 140 566-729 31-171 (443)
365 KOG4649 PQQ (pyrrolo-quinoline 95.8 0.51 1.1E-05 48.8 16.5 107 579-687 24-131 (354)
366 KOG4649 PQQ (pyrrolo-quinoline 95.7 3.1 6.7E-05 43.3 24.2 98 418-527 20-117 (354)
367 COG3204 Uncharacterized protei 95.7 0.7 1.5E-05 48.8 17.5 171 564-735 82-268 (316)
368 PF08596 Lgl_C: Lethal giant l 95.4 1.6 3.4E-05 49.1 20.3 177 569-750 3-264 (395)
369 COG3391 Uncharacterized conser 95.3 1.1 2.5E-05 50.0 18.9 154 571-730 77-238 (381)
370 PRK13616 lipoprotein LpqB; Pro 95.3 0.28 6.1E-06 57.9 14.6 150 568-729 350-523 (591)
371 COG3386 Gluconolactonase [Carb 95.2 1.8 3.9E-05 46.9 19.5 167 576-751 75-264 (307)
372 PF00930 DPPIV_N: Dipeptidyl p 95.2 0.82 1.8E-05 50.5 17.4 172 551-728 26-263 (353)
373 KOG4499 Ca2+-binding protein R 94.8 3.2 7E-05 42.6 18.2 219 419-659 25-263 (310)
374 KOG2395 Protein involved in va 94.7 0.49 1.1E-05 53.4 13.3 136 581-729 349-498 (644)
375 PF10647 Gmad1: Lipoprotein Lp 94.5 1.5 3.3E-05 46.1 16.3 157 569-727 25-192 (253)
376 PRK13616 lipoprotein LpqB; Pro 94.5 2.1 4.5E-05 50.7 19.0 126 588-727 430-564 (591)
377 KOG3630 Nuclear pore complex, 94.0 0.53 1.2E-05 57.3 12.5 139 569-713 102-256 (1405)
378 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.8 17 0.00038 42.5 29.4 54 589-643 272-338 (527)
379 COG3204 Uncharacterized protei 93.6 3.7 8.1E-05 43.6 16.7 173 452-640 81-265 (316)
380 PF12894 Apc4_WD40: Anaphase-p 93.6 0.23 5.1E-06 38.0 5.9 36 646-682 8-43 (47)
381 COG3490 Uncharacterized protei 93.6 12 0.00025 39.8 20.2 233 461-729 72-346 (366)
382 KOG2079 Vacuolar assembly/sort 93.5 0.36 7.8E-06 58.5 10.1 98 579-679 100-203 (1206)
383 PF05096 Glu_cyclase_2: Glutam 93.5 9 0.0002 40.4 19.3 132 570-709 47-183 (264)
384 KOG2079 Vacuolar assembly/sort 93.0 0.42 9.1E-06 57.9 9.5 99 619-729 98-201 (1206)
385 PF14583 Pectate_lyase22: Olig 92.7 20 0.00043 39.9 21.8 118 589-719 169-299 (386)
386 PF06433 Me-amine-dh_H: Methyl 92.6 16 0.00035 39.9 20.2 60 589-648 270-330 (342)
387 PF12894 Apc4_WD40: Anaphase-p 92.4 0.4 8.7E-06 36.7 5.6 33 456-489 11-43 (47)
388 KOG2444 WD40 repeat protein [G 92.4 0.32 7E-06 49.5 6.5 103 579-681 71-179 (238)
389 PF02897 Peptidase_S9_N: Proly 92.3 23 0.00049 39.8 29.8 243 458-729 125-402 (414)
390 PF14727 PHTB1_N: PTHB1 N-term 92.3 24 0.00052 40.0 26.6 146 579-734 146-321 (418)
391 KOG2395 Protein involved in va 92.1 0.88 1.9E-05 51.4 10.1 123 622-749 348-479 (644)
392 KOG2444 WD40 repeat protein [G 91.7 0.44 9.5E-06 48.5 6.6 139 581-731 33-177 (238)
393 PF02897 Peptidase_S9_N: Proly 91.5 28 0.0006 39.1 27.8 243 415-685 130-410 (414)
394 TIGR03074 PQQ_membr_DH membran 91.5 34 0.00074 41.9 23.5 158 579-737 261-485 (764)
395 PF15390 DUF4613: Domain of un 91.1 3.3 7.2E-05 47.7 13.4 148 568-729 20-184 (671)
396 PF05694 SBP56: 56kDa selenium 91.1 16 0.00035 41.2 18.4 141 588-729 157-340 (461)
397 PF07995 GSDH: Glucose / Sorbo 90.9 28 0.00061 38.1 25.1 75 646-726 249-330 (331)
398 TIGR02604 Piru_Ver_Nterm putat 90.5 9.5 0.00021 42.4 16.6 98 569-668 73-202 (367)
399 KOG4499 Ca2+-binding protein R 90.4 7.4 0.00016 40.0 13.8 140 607-750 108-262 (310)
400 PF12234 Rav1p_C: RAVE protein 90.0 7.4 0.00016 46.1 15.5 116 610-729 32-154 (631)
401 PF14781 BBS2_N: Ciliary BBSom 89.9 8.6 0.00019 36.2 12.9 105 613-729 4-123 (136)
402 PF14781 BBS2_N: Ciliary BBSom 89.5 12 0.00025 35.4 13.4 105 579-685 11-131 (136)
403 PF14761 HPS3_N: Hermansky-Pud 89.4 15 0.00032 37.6 15.1 153 570-728 20-211 (215)
404 KOG1916 Nuclear protein, conta 89.0 0.041 9E-07 64.8 -3.7 33 452-486 128-161 (1283)
405 PF05694 SBP56: 56kDa selenium 89.0 6.5 0.00014 44.2 13.3 134 586-720 220-393 (461)
406 TIGR02604 Piru_Ver_Nterm putat 88.9 10 0.00022 42.2 15.2 137 568-718 14-200 (367)
407 PF10168 Nup88: Nuclear pore c 88.7 66 0.0014 39.2 24.6 39 566-604 145-188 (717)
408 PF13449 Phytase-like: Esteras 87.8 25 0.00055 38.3 17.3 159 568-729 20-247 (326)
409 PF14870 PSII_BNR: Photosynthe 87.6 46 0.00099 36.1 26.1 114 606-727 143-257 (302)
410 KOG3630 Nuclear pore complex, 87.6 5.7 0.00012 48.9 12.5 96 569-666 157-260 (1405)
411 PF15390 DUF4613: Domain of un 87.2 17 0.00037 42.1 15.3 113 568-681 57-188 (671)
412 PHA02713 hypothetical protein; 86.7 7.4 0.00016 45.9 13.0 155 578-744 352-548 (557)
413 PF07569 Hira: TUP1-like enhan 86.6 4.4 9.5E-05 41.7 9.7 75 607-685 12-101 (219)
414 PF12234 Rav1p_C: RAVE protein 86.5 14 0.00031 43.8 14.9 110 568-679 30-156 (631)
415 COG5167 VID27 Protein involved 86.2 6.3 0.00014 44.6 11.1 135 581-729 483-630 (776)
416 COG3823 Glutamine cyclotransfe 86.1 15 0.00034 37.2 12.7 130 586-719 109-247 (262)
417 KOG1916 Nuclear protein, conta 84.4 0.96 2.1E-05 54.0 3.9 165 563-734 128-328 (1283)
418 PF10313 DUF2415: Uncharacteri 84.3 3.4 7.4E-05 30.9 5.5 31 457-487 1-34 (43)
419 KOG4441 Proteins containing BT 84.1 19 0.00041 42.6 14.7 147 571-729 326-497 (571)
420 KOG2247 WD40 repeat-containing 83.4 0.15 3.4E-06 56.8 -2.7 143 570-725 37-182 (615)
421 PF10168 Nup88: Nuclear pore c 83.3 20 0.00044 43.4 14.7 79 650-730 85-178 (717)
422 PHA02713 hypothetical protein; 83.2 24 0.00052 41.7 15.1 105 577-685 303-446 (557)
423 PF03022 MRJP: Major royal jel 82.8 67 0.0014 34.5 17.1 142 589-732 35-216 (287)
424 PF07569 Hira: TUP1-like enhan 82.0 6.9 0.00015 40.3 8.9 71 657-729 18-93 (219)
425 KOG1897 Damage-specific DNA bi 81.9 1.4E+02 0.0031 36.9 27.9 144 573-721 494-650 (1096)
426 PF10214 Rrn6: RNA polymerase 81.8 1.4E+02 0.003 36.8 25.8 156 565-729 77-274 (765)
427 PF02333 Phytase: Phytase; In 81.6 95 0.0021 34.7 20.9 183 551-738 81-300 (381)
428 TIGR03074 PQQ_membr_DH membran 81.4 22 0.00047 43.5 14.1 111 578-688 194-353 (764)
429 KOG1900 Nuclear pore complex, 80.8 1.1E+02 0.0024 38.9 19.6 71 566-639 177-273 (1311)
430 PLN00033 photosystem II stabil 80.7 91 0.002 35.2 17.8 146 570-728 241-396 (398)
431 PHA03098 kelch-like protein; P 80.4 36 0.00078 39.7 15.3 107 578-686 343-471 (534)
432 PF14655 RAB3GAP2_N: Rab3 GTPa 80.0 6.3 0.00014 44.5 8.3 92 654-749 6-116 (415)
433 PF10647 Gmad1: Lipoprotein Lp 79.5 30 0.00066 36.3 12.9 111 609-728 25-141 (253)
434 KOG2280 Vacuolar assembly/sort 78.5 67 0.0014 38.5 15.9 46 551-596 67-112 (829)
435 PF14727 PHTB1_N: PTHB1 N-term 76.7 1.4E+02 0.0031 33.9 31.5 64 420-485 36-104 (418)
436 PF10313 DUF2415: Uncharacteri 76.3 7.3 0.00016 29.2 4.9 32 608-639 1-34 (43)
437 KOG4441 Proteins containing BT 75.1 47 0.001 39.3 14.1 105 579-685 286-410 (571)
438 TIGR03118 PEPCTERM_chp_1 conse 74.7 38 0.00082 36.5 11.6 113 610-729 25-168 (336)
439 PF08728 CRT10: CRT10; InterP 74.3 27 0.00058 42.0 11.6 106 619-730 113-245 (717)
440 COG1520 FOG: WD40-like repeat 74.1 1.2E+02 0.0027 33.4 16.6 109 578-689 68-181 (370)
441 KOG4460 Nuclear pore complex, 74.0 34 0.00074 39.2 11.6 79 651-730 105-197 (741)
442 COG5276 Uncharacterized conser 73.9 1.3E+02 0.0029 32.3 16.0 136 600-749 79-221 (370)
443 PF12768 Rax2: Cortical protei 71.6 92 0.002 33.4 14.0 91 588-679 16-123 (281)
444 PF07995 GSDH: Glucose / Sorbo 71.4 46 0.001 36.4 12.2 108 609-721 3-133 (331)
445 TIGR03606 non_repeat_PQQ dehyd 70.3 78 0.0017 36.3 13.8 55 606-661 28-90 (454)
446 PRK10115 protease 2; Provision 70.1 1.5E+02 0.0033 35.9 17.2 71 609-681 128-209 (686)
447 PF14655 RAB3GAP2_N: Rab3 GTPa 68.5 2.1E+02 0.0047 32.4 27.0 38 650-687 308-345 (415)
448 KOG2377 Uncharacterized conser 67.6 74 0.0016 36.0 12.3 120 455-598 65-187 (657)
449 PHA03098 kelch-like protein; P 67.6 75 0.0016 37.0 13.7 105 578-685 295-420 (534)
450 PHA02790 Kelch-like protein; P 67.2 1.8E+02 0.0038 33.7 16.3 102 579-685 320-429 (480)
451 PRK13684 Ycf48-like protein; P 66.1 2.1E+02 0.0045 31.4 18.5 107 568-678 215-330 (334)
452 KOG2377 Uncharacterized conser 65.8 57 0.0012 36.9 11.0 138 572-720 27-173 (657)
453 TIGR01063 gyrA DNA gyrase, A s 65.7 3.4E+02 0.0073 33.7 22.7 152 576-729 600-767 (800)
454 PF07250 Glyoxal_oxid_N: Glyox 65.5 56 0.0012 34.2 10.6 149 591-742 49-210 (243)
455 KOG2280 Vacuolar assembly/sort 64.2 3.3E+02 0.0071 33.0 17.8 53 607-660 216-270 (829)
456 TIGR03118 PEPCTERM_chp_1 conse 64.1 2.2E+02 0.0047 30.9 23.1 156 579-743 101-293 (336)
457 PF08728 CRT10: CRT10; InterP 63.7 62 0.0013 39.0 11.7 100 578-678 114-245 (717)
458 PRK10115 protease 2; Provision 63.1 3.5E+02 0.0075 32.9 25.2 31 458-488 128-163 (686)
459 PF13449 Phytase-like: Esteras 62.9 97 0.0021 33.8 12.5 110 607-719 19-164 (326)
460 PF11715 Nup160: Nucleoporin N 62.5 30 0.00065 40.6 9.0 38 457-494 215-256 (547)
461 PF14761 HPS3_N: Hermansky-Pud 62.0 41 0.00089 34.4 8.5 47 621-667 29-77 (215)
462 PF12657 TFIIIC_delta: Transcr 61.8 41 0.00088 33.1 8.5 28 702-729 87-119 (173)
463 PF05935 Arylsulfotrans: Aryls 61.3 2E+02 0.0043 33.2 15.3 111 573-687 153-309 (477)
464 PF14870 PSII_BNR: Photosynthe 60.8 2.5E+02 0.0054 30.5 20.5 150 566-728 143-301 (302)
465 TIGR03606 non_repeat_PQQ dehyd 60.7 3.1E+02 0.0067 31.5 19.8 34 455-488 28-61 (454)
466 PRK13684 Ycf48-like protein; P 60.7 2.6E+02 0.0056 30.6 29.1 152 567-730 172-330 (334)
467 PF12657 TFIIIC_delta: Transcr 58.5 38 0.00083 33.3 7.7 32 650-681 86-123 (173)
468 COG5290 IkappaB kinase complex 57.3 1.3E+02 0.0027 36.5 12.3 97 610-717 249-353 (1243)
469 KOG3616 Selective LIM binding 57.0 18 0.0004 42.7 5.6 70 605-677 12-81 (1636)
470 PF08801 Nucleoporin_N: Nup133 56.6 1.9E+02 0.0041 32.6 13.9 29 701-730 190-218 (422)
471 KOG1983 Tomosyn and related SN 54.4 3.3E+02 0.0072 34.6 16.5 75 564-643 195-269 (993)
472 COG5276 Uncharacterized conser 54.3 3.1E+02 0.0068 29.6 19.1 131 569-712 88-225 (370)
473 PF12768 Rax2: Cortical protei 54.3 2.2E+02 0.0047 30.6 12.9 118 630-752 16-147 (281)
474 KOG4460 Nuclear pore complex, 54.2 81 0.0018 36.3 9.8 33 569-601 167-203 (741)
475 TIGR02276 beta_rpt_yvtn 40-res 53.8 39 0.00083 24.1 5.2 39 619-657 2-41 (42)
476 PF11715 Nup160: Nucleoporin N 51.9 45 0.00098 39.1 8.2 37 651-687 216-256 (547)
477 COG3292 Predicted periplasmic 51.8 4.7E+02 0.01 30.8 19.2 311 401-754 155-514 (671)
478 PF07676 PD40: WD40-like Beta 51.6 47 0.001 23.6 5.3 31 453-483 5-38 (39)
479 KOG3616 Selective LIM binding 51.5 33 0.00072 40.7 6.5 71 646-729 11-81 (1636)
480 PF10395 Utp8: Utp8 family; I 51.1 3.7E+02 0.008 32.4 15.1 30 456-485 129-158 (670)
481 PF05935 Arylsulfotrans: Aryls 49.0 4.8E+02 0.01 30.2 16.9 124 613-741 153-313 (477)
482 PF10395 Utp8: Utp8 family; I 48.9 5.4E+02 0.012 31.0 16.0 152 567-729 129-303 (670)
483 COG5167 VID27 Protein involved 48.4 2E+02 0.0044 33.1 11.7 121 556-679 499-632 (776)
484 PHA02790 Kelch-like protein; P 47.8 3.9E+02 0.0085 30.8 14.9 106 579-686 273-391 (480)
485 COG4590 ABC-type uncharacteriz 47.4 97 0.0021 35.1 9.0 103 580-684 282-391 (733)
486 PRK04081 hypothetical protein; 46.6 11 0.00025 37.4 1.6 75 262-336 20-95 (207)
487 TIGR03548 mutarot_permut cycli 46.3 4.1E+02 0.0088 28.6 15.4 106 578-685 73-200 (323)
488 TIGR03548 mutarot_permut cycli 46.2 4.1E+02 0.0088 28.6 14.6 92 578-670 124-233 (323)
489 KOG1520 Predicted alkaloid syn 43.5 5.1E+02 0.011 28.9 14.6 84 581-666 192-281 (376)
490 KOG1898 Splicing factor 3b, su 42.9 8.1E+02 0.017 31.1 17.5 151 589-750 854-1028(1205)
491 KOG1900 Nuclear pore complex, 41.8 1.5E+02 0.0032 38.0 10.2 156 428-597 96-273 (1311)
492 PLN02153 epithiospecifier prot 41.8 4.9E+02 0.011 28.2 16.9 105 577-684 32-172 (341)
493 PF07676 PD40: WD40-like Beta 41.3 86 0.0019 22.1 5.3 30 699-728 7-38 (39)
494 PF03088 Str_synth: Strictosid 41.1 52 0.0011 28.8 4.7 43 626-668 33-75 (89)
495 KOG2247 WD40 repeat-containing 41.0 4.8 0.0001 45.4 -2.1 108 611-730 38-146 (615)
496 PLN00033 photosystem II stabil 39.4 6.1E+02 0.013 28.6 27.5 113 610-729 241-354 (398)
497 PLN02193 nitrile-specifier pro 37.7 6.8E+02 0.015 28.7 16.8 104 578-685 229-357 (470)
498 COG4590 ABC-type uncharacteriz 37.5 1.2E+02 0.0027 34.3 7.9 171 453-642 217-390 (733)
499 PF14269 Arylsulfotran_2: Aryl 37.4 5.6E+02 0.012 27.6 14.7 134 584-729 21-218 (299)
500 smart00036 CNH Domain found in 36.6 3.9E+02 0.0086 28.7 11.8 60 621-682 14-76 (302)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-58 Score=514.41 Aligned_cols=440 Identities=48% Similarity=0.793 Sum_probs=335.4
Q ss_pred cCCCceeEEeccccCCccceeeeecCCceecHHHHHHhcCCcHHHHHHHhhcccccCCCCCccccccCCCCC----Cccc
Q 004404 298 LDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNGSSGG----GMKS 373 (755)
Q Consensus 298 ld~g~~~~~~e~~~dG~~~~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~~~sgs~D~tv~~~Wd~~~g----~~~~ 373 (755)
+|.|++++|.+...+|+|+++.|++++.++++|+|+...|++++|.+++.++++. .|......-+-..+ +...
T Consensus 106 ~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~~e~~e~~~g~~~~v~~l~~~~~~~---~~~~~~~~~~~~s~s~~~~~~~ 182 (712)
T KOG0283|consen 106 LDTGDEFSVSENPEDGSVNRLSDVGTGASSTLEELESSPGESSRVKELGDRENAD---LDEMLTKYNDDVSGSVLLRKSK 182 (712)
T ss_pred ecccceeeEeeccCccccccccCCCcccccccccccCCcCcccchhhhhhhcccc---cchhhcccccccccccccchhh
Confidence 7999999999999999999999999999999999999999999999999987753 11111100000011 1122
Q ss_pred cccCCcccccceeEEeecccc-ccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEe
Q 004404 374 KKKGSWFKSIRTVASSVTGHK-ERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI 452 (755)
Q Consensus 374 k~k~~~~~~v~sv~~s~~g~~-~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l 452 (755)
+.+..|++.++.++...++.. .+......+...+..+...-.........-+......+++.+.+..+++..++..|++
T Consensus 183 r~~~~~l~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~ 262 (712)
T KOG0283|consen 183 RYGKRWLKSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEI 262 (712)
T ss_pred hhhhhhhhhccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeecc
Confidence 333469999998988887542 2222222232333333333233333333333444778888899999999999999999
Q ss_pred e-cccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeec
Q 004404 453 Q-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (755)
Q Consensus 453 ~-gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~ 531 (755)
+ +|.++||+|+||+||+||||||+||.|+||.+...+....- ..........+.......-+.. ....+ .
T Consensus 263 ~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~----~~~~~~~~~~~~~~s~~~p~~s--~~~~~---~ 333 (712)
T KOG0283|consen 263 SNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVA----EGDSSCMYFEYNANSQIEPSTS--SEEKI---S 333 (712)
T ss_pred ccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhccc----ccccchhhhhhhhccccCcccc--ccccc---c
Confidence 9 99999999999999999999999999999999765441110 0000000011111100000000 00000 0
Q ss_pred ccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceE
Q 004404 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVT 611 (755)
Q Consensus 532 ~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~Vt 611 (755)
................++..++.+..+|++.|.||.++|.+|.|+.+++|+++++|+|||||++...+|+++|.|.+.|+
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVT 413 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVT 413 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeE
Confidence 00011122222333566677888899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccccc
Q 004404 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691 (755)
Q Consensus 612 sVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~ 691 (755)
||+|+|.|.+||++|+.||+||||++...+++.|...+..|++++|.|||++.++|+.+|.|++|++...+++...++..
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEeecCCcc--EEEEEEE
Q 004404 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGENYV--QYMVCIV 750 (755)
Q Consensus 692 ~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~~GH~~~--V~sv~fs 750 (755)
...+...|. .||+++|.|.....|+++++|.+|||||+ .+++++|+|+.+. +..+.|+
T Consensus 494 ~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs 555 (712)
T KOG0283|consen 494 HNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFS 555 (712)
T ss_pred ccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEc
Confidence 777766666 99999999987778999999999999998 8999999999887 6666664
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-38 Score=327.06 Aligned_cols=322 Identities=20% Similarity=0.260 Sum_probs=279.4
Q ss_pred HHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCC
Q 004404 333 EMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (755)
Q Consensus 333 ~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g 409 (755)
..+.||...|.++.|+|+ +++|+.|.|+| +||..+..-....| +|.+-|..++.+++|++
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR-~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~--------------- 171 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVR-LWDLDTETPLFTCK-GHKNWVLCVAWSPDGKK--------------- 171 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEE-eeccCCCCcceeec-CCccEEEEEEECCCcch---------------
Confidence 457899999999999996 99999999999 99999998888888 88888888888887642
Q ss_pred CceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC-----CCCEEEEEECCCcEEEEe
Q 004404 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-----DGRYLASAGEDCVIHVWQ 484 (755)
Q Consensus 410 ~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp-----dg~~LaTgs~DGtVrVWd 484 (755)
+++|+.++.|++||.++++.. ...|.+|+..|++++|.| ..++||+++.||.|+|||
T Consensus 172 --------------iASG~~dg~I~lwdpktg~~~----g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 172 --------------IASGSKDGSIRLWDPKTGQQI----GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred --------------hhccccCCeEEEecCCCCCcc----cccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 478899999999998877654 345789999999999966 577999999999999999
Q ss_pred CcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEe
Q 004404 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF 563 (755)
Q Consensus 485 l~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l 563 (755)
+..+..+..+ .+|...+.++.|..++. +++++.+..+. +|.. .++..+.+
T Consensus 234 ~~~~~~~~~l-----sgHT~~VTCvrwGG~gl-iySgS~DrtIk-----------------------vw~a~dG~~~r~l 284 (480)
T KOG0271|consen 234 TKLGTCVRTL-----SGHTASVTCVRWGGEGL-IYSGSQDRTIK-----------------------VWRALDGKLCREL 284 (480)
T ss_pred ccCceEEEEe-----ccCccceEEEEEcCCce-EEecCCCceEE-----------------------EEEccchhHHHhh
Confidence 9888877775 89999999999987764 45666777773 4433 56778889
Q ss_pred ccCCCCEEEEEecCC-------------------------------------cEEEEEeCCCcEEEEECCC-CcEEEEe-
Q 004404 564 QGHLDDVLDLSWSKS-------------------------------------QHLLSSSMDKTVRLWHLSS-KTCLKIF- 604 (755)
Q Consensus 564 ~gH~~~V~~L~~spd-------------------------------------~~LaSgs~DgtVrLWDl~t-~~~~~~~- 604 (755)
+||...|+.|+.+.+ ..|++|+.|.++.||+-.. .+++..+
T Consensus 285 kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt 364 (480)
T KOG0271|consen 285 KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT 364 (480)
T ss_pred cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh
Confidence 999999999988711 1499999999999999764 3466665
Q ss_pred ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec-cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCee
Q 004404 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (755)
Q Consensus 605 ~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~-~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~ 683 (755)
+|..-|+.+.|+| |++++++++.|..|++|+.++++.+..+ +|-..|+.++|+.|.++|++|+.|.++++|++++.++
T Consensus 365 gHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 365 GHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred chhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence 4999999999999 9999999999999999999999988544 5779999999999999999999999999999999888
Q ss_pred eeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
...+ .+|...|.++.|+|||. ++++|+.|..+++|.
T Consensus 444 ~~DL---------pGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 444 KQDL---------PGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred cccC---------CCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence 7654 39999999999999998 899999999999994
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-37 Score=319.07 Aligned_cols=305 Identities=19% Similarity=0.304 Sum_probs=261.5
Q ss_pred CccCCCceeeeeecCCC--cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEE
Q 004404 405 SSEKGGRRSSSATDDSQ--DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV 482 (755)
Q Consensus 405 ~~~~g~~~~vs~~~ds~--~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrV 482 (755)
+...||...+.+..+++ ..+++|+.|.+||+||..+. .+..+.++|...|.||+|+|||+.||||+.||+|++
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-----Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-----TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-----CcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 33445555555555555 34899999999999998743 344567899999999999999999999999999999
Q ss_pred EeCcCCceeeeeecccccCccccEEEeecCC-----CCceeccccCCCceeeecccccccccccccCcccccceeeecC-
Q 004404 483 WQVVESERKGELLEKQEDGHLNMLLLANGSP-----EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS- 556 (755)
Q Consensus 483 Wdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~-----dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s- 556 (755)
||..++++...- ..+|...|..++|.| ....+++++.++.+ .+|+..
T Consensus 184 wdpktg~~~g~~----l~gH~K~It~Lawep~hl~p~~r~las~skDg~v-----------------------rIWd~~~ 236 (480)
T KOG0271|consen 184 WDPKTGQQIGRA----LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV-----------------------RIWDTKL 236 (480)
T ss_pred ecCCCCCccccc----ccCcccceeEEeecccccCCCccceecccCCCCE-----------------------EEEEccC
Confidence 999998876654 478899999999876 45678888777777 566654
Q ss_pred CCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEe-----------e-------
Q 004404 557 DKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFN-----------P------- 617 (755)
Q Consensus 557 ~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafs-----------P------- 617 (755)
++++..+.||+.+|+|++|--++++++|+.|++|++|+...|.+.+.+. |...|+.|+.+ |
T Consensus 237 ~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 237 GTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred ceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 4678889999999999999999999999999999999999999999996 99999999887 2
Q ss_pred -----------------CCCcEEEEEECCCcEEEEECCC-CcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 004404 618 -----------------VDDRYFISGSLDAKVRIWSIPE-RQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (755)
Q Consensus 618 -----------------~dg~~LaSgS~DgtVrIWDl~t-~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl 678 (755)
..+..|++|+.|.++.+|+-.. .+++ +..+|+.-|+.+.|+||+++||+++-|..|++|+.
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 1123599999999999999654 3344 67888999999999999999999999999999999
Q ss_pred CCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
++|+.+..+ ++|-..|..++|+.|.+ +|++++.|.+++||| +.++..-+.||...|+.+.++|
T Consensus 397 ~tGk~lasf---------RGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp 461 (480)
T KOG0271|consen 397 RTGKFLASF---------RGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP 461 (480)
T ss_pred CCcchhhhh---------hhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC
Confidence 999998764 49999999999999987 899999999999999 6788899999999999999875
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.9e-34 Score=299.50 Aligned_cols=264 Identities=18% Similarity=0.346 Sum_probs=236.2
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC--CCEEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd--g~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
..+++|+-+|.+++|+... ....++|.||.+.|.++.|+|. +..||||+.||+|++|++.+...+..+
T Consensus 188 ~~laT~swsG~~kvW~~~~-----~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l----- 257 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVPQ-----CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL----- 257 (459)
T ss_pred CeEEEeecCCceeEeecCC-----cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh-----
Confidence 5578999999999998873 3456788999999999999996 669999999999999999887777665
Q ss_pred cCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC
Q 004404 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS 578 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd 578 (755)
.+|...+..++|.|+|.+|.++..+..+ .+|++ +...+....||...|.+++|.++
T Consensus 258 ~gH~~RVs~VafHPsG~~L~TasfD~tW-----------------------RlWD~~tk~ElL~QEGHs~~v~~iaf~~D 314 (459)
T KOG0272|consen 258 EGHLARVSRVAFHPSGKFLGTASFDSTW-----------------------RLWDLETKSELLLQEGHSKGVFSIAFQPD 314 (459)
T ss_pred hcchhhheeeeecCCCceeeecccccch-----------------------hhcccccchhhHhhcccccccceeEecCC
Confidence 7888999999999999999999888877 45555 34556677899999999999999
Q ss_pred -cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEE
Q 004404 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAA 655 (755)
Q Consensus 579 -~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~Vtsv 655 (755)
..+++|+.|..-+|||++++.++..+. |..+|..|+|+| +|..|++|+.|++++|||++....+. +..|.+-|+.|
T Consensus 315 GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~V 393 (459)
T KOG0272|consen 315 GSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQV 393 (459)
T ss_pred CceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhhe
Confidence 567899999999999999999999996 999999999999 99999999999999999999887774 45566889999
Q ss_pred EEcc-CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 656 CYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 656 afSP-dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+|+| .|.+|++++.|++++||...+..++..+ .+|.+.|.++..+|+++ .+++++.|.+|++|.
T Consensus 394 k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL---------aGHe~kV~s~Dis~d~~-~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 394 KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL---------AGHEGKVISLDISPDSQ-AIATSSFDRTIKLWR 458 (459)
T ss_pred EecccCCeEEEEcccCcceeeecCCCcccchhh---------cCCccceEEEEeccCCc-eEEEeccCceeeecc
Confidence 9999 7899999999999999999999888764 49999999999999998 899999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.5e-34 Score=299.06 Aligned_cols=260 Identities=22% Similarity=0.374 Sum_probs=235.2
Q ss_pred cccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCC--CceeccccCCCceeeec
Q 004404 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKR 531 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~d--g~~l~~~s~d~~i~~~~ 531 (755)
|-+.+|..+.|+.|++.||||+.+|.++||+..+...+..+ .+|...+..+.|.|. ...++++..++.+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-----~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv---- 243 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-----RGHTSRVGAAVFHPVDSDLNLATASADGTV---- 243 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-----eccccceeeEEEccCCCccceeeeccCCce----
Confidence 56789999999999999999999999999999988777776 789999999999997 5688888888887
Q ss_pred ccccccccccccCcccccceeeecCC-CceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEe-ecCC
Q 004404 532 RGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF-SHSD 608 (755)
Q Consensus 532 ~~~~~~~~s~s~d~~~~~~~v~~~s~-k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~-~h~~ 608 (755)
.+|.++. .++..+.+|...|..++|+|+ .+|++++.|.+-+|||+.++..+... +|..
T Consensus 244 -------------------klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~ 304 (459)
T KOG0272|consen 244 -------------------KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSK 304 (459)
T ss_pred -------------------eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccc
Confidence 5666655 788999999999999999999 78999999999999999998766555 4999
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecc
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~ 687 (755)
.|.+|+|+| ||.++++|+.|..-+|||++++.++- +.+|-..|.+|+|+|+|..||+|+.|++++|||++....+.++
T Consensus 305 ~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 305 GVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred ccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec
Confidence 999999999 99999999999999999999999884 4566789999999999999999999999999999998887664
Q ss_pred ccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+ +|..-|+.|.|.|+...+|++++.|++++||. ++.+++.+.||++.|.++.+++
T Consensus 384 p---------AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 384 P---------AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP 440 (459)
T ss_pred c---------cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc
Confidence 4 89999999999996666999999999999999 6889999999999999999865
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.4e-32 Score=273.66 Aligned_cols=273 Identities=19% Similarity=0.294 Sum_probs=236.0
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
++|+||.+.|.++.|++|.++|++++.||.+.|||.-+..+...+ +-....+...+++|.+.+++.+..+....+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-----pl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-----PLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-----ecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 568999999999999999999999999999999999887766665 345678899999999999999988876533
Q ss_pred ecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCC
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~ 608 (755)
+.....-. ....+..+++.+|++-+.|+.|.+++.|++++.|.++.+||+++++.+..|. |.+
T Consensus 124 y~ls~~d~----------------~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 124 YPLSTRDA----------------EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred Eecccccc----------------cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcc
Confidence 32221000 0011345678999999999999999999999999999999999999999996 999
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecc
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~ 687 (755)
.|.++.++|.+++.|++|+-|++.+|||++.+.+++ +..|...|++|+|.|+|.-+++|+.|+++++||++..+.+..+
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence 999999999889999999999999999999998885 5567789999999999999999999999999999999888765
Q ss_pred ccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+- ..-..+|++++|+..|+ +|++|..|.++.||| .++.+..+.||.+.|.++..+|
T Consensus 268 s~-------~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 268 SH-------DSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred cc-------CcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC
Confidence 41 23456899999999998 899999999999999 4788999999999999988764
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.9e-32 Score=289.31 Aligned_cols=386 Identities=17% Similarity=0.233 Sum_probs=286.5
Q ss_pred eeeeccC---CCceeEEeccccCCccceeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc----cccCCCCCccccccC
Q 004404 293 CLIKNLD---NGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN----VEEGNKDSFDLNNNG 365 (755)
Q Consensus 293 ~~i~~ld---~g~~~~~~e~~~dG~~~~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~----~~sgs~D~tv~~~Wd 365 (755)
-.|++|+ +++.+++-.++.+ .....=-.++|..+ ..+.||+..|+++.|+|. +++||+|.+|. ++.
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGre-rfg~~F~~DSG~Sv-----Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~-ffe 176 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGRE-RFGHVFLWDSGNSV-----GEITGHSRRINSVDFKPSRPFRIATGSDDNTVA-FFE 176 (603)
T ss_pred cccccceeCCCCcEEEEEecCcc-ceeEEEEecCCCcc-----ceeeccceeEeeeeccCCCceEEEeccCCCeEE-Eee
Confidence 3566663 6666666553332 24333333455556 678999999999999987 99999999999 887
Q ss_pred CCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccc
Q 004404 366 SSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTA 445 (755)
Q Consensus 366 ~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~ 445 (755)
+..-+.+...+ -|.+-|+.++++++|. .+++.+.|++|.+||-.+++...
T Consensus 177 GPPFKFk~s~r-~HskFV~~VRysPDG~-----------------------------~Fat~gsDgki~iyDGktge~vg 226 (603)
T KOG0318|consen 177 GPPFKFKSSFR-EHSKFVNCVRYSPDGS-----------------------------RFATAGSDGKIYIYDGKTGEKVG 226 (603)
T ss_pred CCCeeeeeccc-ccccceeeEEECCCCC-----------------------------eEEEecCCccEEEEcCCCccEEE
Confidence 76655444444 6777788888887652 24566778888888877776543
Q ss_pred eeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccc---------------------------
Q 004404 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ--------------------------- 498 (755)
Q Consensus 446 ~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~--------------------------- 498 (755)
.+.- -.+|++.|.+|+|+||++.|+|++.|.+++|||+.+.+...++....
T Consensus 227 ~l~~--~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ 304 (603)
T KOG0318|consen 227 ELED--SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINY 304 (603)
T ss_pred EecC--CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEE
Confidence 3221 24899999999999999999999999999999998887666553211
Q ss_pred -----------ccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEe--cc
Q 004404 499 -----------EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF--QG 565 (755)
Q Consensus 499 -----------~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l--~g 565 (755)
..+|...+.++..++++..+.+++.++.+..|... ...-..+ ++
T Consensus 305 ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~-----------------------~g~~~~~~g~~ 361 (603)
T KOG0318|consen 305 LNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG-----------------------SGTSDRLAGKG 361 (603)
T ss_pred ecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC-----------------------Ccccccccccc
Confidence 13455555566666666666666666665433322 2222223 57
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCC------------c--E-----------------EEEee---------
Q 004404 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSK------------T--C-----------------LKIFS--------- 605 (755)
Q Consensus 566 H~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~------------~--~-----------------~~~~~--------- 605 (755)
|...|.+++-+..+.+++++.|.++++.++... + . +..+.
T Consensus 362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~ 441 (603)
T KOG0318|consen 362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP 441 (603)
T ss_pred ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence 889999999888888999999999999976311 0 0 01111
Q ss_pred cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE---EEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe
Q 004404 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV---VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~---v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~ 682 (755)
..-...+++++| ++..++.|+.|++|+||.+....+ .....|...|+.++|+||+.|||+|...+.+.+||+.+.+
T Consensus 442 ~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 442 IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc
Confidence 112467899999 999999999999999999987553 3567889999999999999999999999999999999887
Q ss_pred eeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC---CcceEEeecCCccEEEEEEE
Q 004404 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG---IDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~---~~ll~~~~GH~~~V~sv~fs 750 (755)
... ..+.-|...|.+++|+|+.. ++++|+-|-.|.||+. .+.+.....|...|+.+.|.
T Consensus 521 ~~~--------~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl 582 (603)
T KOG0318|consen 521 VKT--------NRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL 582 (603)
T ss_pred eec--------ceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChhhheEeccccccCceeEEEe
Confidence 732 22346999999999999987 8999999999999994 44566667898889988874
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-31 Score=267.25 Aligned_cols=280 Identities=16% Similarity=0.285 Sum_probs=246.0
Q ss_pred CCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 420 s~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
..+.+++++.|.++.+|++...+.......+.|.||...|..+..++||++.++++.|+++++||+.+++....|
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f----- 101 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF----- 101 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-----
Confidence 356788999999999999998887777777889999999999999999999999999999999999999877776
Q ss_pred cCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccC--CCCEEEEEecC
Q 004404 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH--LDDVLDLSWSK 577 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH--~~~V~~L~~sp 577 (755)
.+|...+.+++++++.+.+++++.+..+ .+|...+.+..+...+ .+.|.|++|+|
T Consensus 102 ~GH~~dVlsva~s~dn~qivSGSrDkTi-----------------------klwnt~g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 102 VGHTKDVLSVAFSTDNRQIVSGSRDKTI-----------------------KLWNTLGVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred EecCCceEEEEecCCCceeecCCCccee-----------------------eeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence 7899999999999999999999998887 5677777777777655 68999999999
Q ss_pred C---cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEE
Q 004404 578 S---QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVT 653 (755)
Q Consensus 578 d---~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~Vt 653 (755)
+ -.|++++.|++|++||+++.+..+.+- |+++++.++++| ||.++++|+.||.+.+||++.++.+..+.+...|.
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~ 237 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVN 237 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEeccCCCeEe
Confidence 7 579999999999999999999888875 999999999999 99999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 654 AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 654 svafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+++|+|+...|+.+. +-.|+|||+.++..+..+.........+.......+++|+++|+ .|+.|-.|+.|++|..
T Consensus 238 sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQV 312 (315)
T ss_pred eEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEe
Confidence 999999876666655 55699999999998887665443333333345568899999998 7999999999999974
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.5e-31 Score=267.45 Aligned_cols=267 Identities=19% Similarity=0.352 Sum_probs=227.4
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeee-ecccccC
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL-LEKQEDG 501 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l-~~~~~~~ 501 (755)
.+++++.||++.|||.-+.. +.+.++--...|..++|+|.|+++|.|+-|+...||++.+.+..... ......+
T Consensus 69 ~ivSaSqDGklIvWDs~Ttn-----K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g 143 (343)
T KOG0286|consen 69 RIVSASQDGKLIVWDSFTTN-----KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG 143 (343)
T ss_pred eEEeeccCCeEEEEEccccc-----ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecC
Confidence 35778999999999976443 34445567789999999999999999999999999999865222111 1223478
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecC-C-
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK-S- 578 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~sp-d- 578 (755)
|...+.+..|.+|+.++... .+... .+|++ +++.+..|.||.++|.+|.++| +
T Consensus 144 HtgylScC~f~dD~~ilT~S-GD~TC-----------------------alWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 144 HTGYLSCCRFLDDNHILTGS-GDMTC-----------------------ALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred ccceeEEEEEcCCCceEecC-CCceE-----------------------EEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 99999999999977766554 44333 34554 6778899999999999999999 5
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC---CCEEE
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH---EMVTA 654 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~---~~Vts 654 (755)
+.|++|+.|++.+|||++.+.+.++|. |...|++|.|.| +|.-|++|+.|++.|+||++..+.+..+.+. .+|++
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITS 278 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCcee
Confidence 889999999999999999999999996 999999999999 9999999999999999999998888776655 48999
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 655 vafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
++|+..|++|++|..|.++.+||.-.++....+ .+|.++|+++..+|+|- .+++|+.|.+||||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L---------~GHeNRvScl~~s~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL---------AGHENRVSCLGVSPDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEe---------eccCCeeEEEEECCCCc-EEEecchhHheeecC
Confidence 999999999999999999999999888877653 49999999999999997 899999999999994
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-31 Score=295.10 Aligned_cols=408 Identities=16% Similarity=0.206 Sum_probs=295.1
Q ss_pred cccccceeeeccCCCceeEEeccccCCccceeeeecCCceecHHHHHHhcC-CcHHHHHHHhhcc---cccCCCCCcccc
Q 004404 287 GVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVG-HSPIVQELMRRQN---VEEGNKDSFDLN 362 (755)
Q Consensus 287 ~~~~~~~~i~~ld~g~~~~~~e~~~dG~~~~l~d~~tg~~lt~~e~~~~~G-Hs~~V~~l~~~~~---~~sgs~D~tv~~ 362 (755)
++++..+++. |+..++.++... -++.-+++.+.+|+.+ ...+. |+..|.-++|.|. +++|+-|++++
T Consensus 60 ed~d~ita~~-l~~d~~~L~~a~--rs~llrv~~L~tgk~i-----rswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~- 130 (775)
T KOG0319|consen 60 EDEDEITALA-LTPDEEVLVTAS--RSQLLRVWSLPTGKLI-----RSWKAIHEAPVITMAFDPTGTLLATGGADGRVK- 130 (775)
T ss_pred cchhhhheee-ecCCccEEEEee--ccceEEEEEcccchHh-----HhHhhccCCCeEEEEEcCCCceEEeccccceEE-
Confidence 3455566666 666677777664 4567789999999665 67777 9999999999997 89999999999
Q ss_pred ccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCc
Q 004404 363 NNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD 442 (755)
Q Consensus 363 ~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~ 442 (755)
+||...+.+.+.+| ||..-|-++.|-+ .. ...++++|..|+.|++||...+.
T Consensus 131 VWdi~~~~~th~fk-G~gGvVssl~F~~----~~-----------------------~~~lL~sg~~D~~v~vwnl~~~~ 182 (775)
T KOG0319|consen 131 VWDIKNGYCTHSFK-GHGGVVSSLLFHP----HW-----------------------NRWLLASGATDGTVRVWNLNDKR 182 (775)
T ss_pred EEEeeCCEEEEEec-CCCceEEEEEeCC----cc-----------------------chhheeecCCCceEEEEEcccCc
Confidence 99999988888777 4444343333322 11 01457899999999999998655
Q ss_pred ccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCC-----Cce
Q 004404 443 LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-----PTS 517 (755)
Q Consensus 443 ~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~d-----g~~ 517 (755)
. +...+..|...|++++|++|+.-+++++.|..|.|||+.+.+....++.... +-.+.+.++ +.+
T Consensus 183 t----cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~------~E~vv~l~~~~~~~~~~ 252 (775)
T KOG0319|consen 183 T----CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYES------LESVVRLREELGGKGEY 252 (775)
T ss_pred h----HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhh------eeeEEEechhcCCcceE
Confidence 4 4566789999999999999999999999999999999977665554432110 011111111 223
Q ss_pred eccccCCCceeeecccccc--ccc---------------------ccccC--------------------------cccc
Q 004404 518 LSPKHLDNHLEKKRRGRSI--NRK---------------------SLSLD--------------------------HMVV 548 (755)
Q Consensus 518 l~~~s~d~~i~~~~~~~~~--~~~---------------------s~s~d--------------------------~~~~ 548 (755)
+.+.+..+.+..+...... ... .+..+ ..+.
T Consensus 253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l 332 (775)
T KOG0319|consen 253 IITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL 332 (775)
T ss_pred EEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec
Confidence 3333333322221111000 000 00000 0000
Q ss_pred --------------cceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcE----EEEe-ecCC
Q 004404 549 --------------PETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC----LKIF-SHSD 608 (755)
Q Consensus 549 --------------~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~----~~~~-~h~~ 608 (755)
..+++...+..-..+.||...|.+|....+ -.|++|+.|++|++|.++.+.. +... +|+.
T Consensus 333 G~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~ 412 (775)
T KOG0319|consen 333 GPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN 412 (775)
T ss_pred CCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc
Confidence 002233333334467899999999994444 5899999999999998854432 2222 3999
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc----EE------EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ----VV------DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~----~v------~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl 678 (755)
.|.+|+++.....+|+++|.|++|++|++...+ +. ....|...|++++++|+.+.||+|+.|.+.+||++
T Consensus 413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL 492 (775)
T ss_pred ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence 999999987556799999999999999997622 11 12457789999999999999999999999999999
Q ss_pred CCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+...+..++ .+|...|.++.|+|..+ .++++|.|++|+||. .+.++++|.||+..|..+.|..
T Consensus 493 e~~~l~~vL---------sGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 493 EQLRLLGVL---------SGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR 557 (775)
T ss_pred cCceEEEEe---------eCCccceEEEEeccccc-eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee
Confidence 988777664 49999999999999987 899999999999999 6899999999999999999863
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.8e-30 Score=290.38 Aligned_cols=232 Identities=26% Similarity=0.494 Sum_probs=204.0
Q ss_pred ecCCCcEEEEeCCCcEEEEeeCCCCccc--------------------------ceeeeeEeecccCCEEEEEEcCCCCE
Q 004404 417 TDDSQDVSFHGQERVRVRQYGKSCKDLT--------------------------ALYKCQEIQAHNGSIWSIKFSLDGRY 470 (755)
Q Consensus 417 ~~ds~~~l~sg~~dg~Vriwd~~~~~~~--------------------------~~~~~q~l~gH~~~I~sI~fSpdg~~ 470 (755)
++|+. .++.|..+-.|++|.+..+++. ......++.||.++|..+.|+|+.++
T Consensus 387 Sddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rf 465 (707)
T KOG0263|consen 387 SDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRF 465 (707)
T ss_pred cCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccc
Confidence 33443 6899999999999998743211 11223458899999999999999999
Q ss_pred EEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccc
Q 004404 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (755)
Q Consensus 471 LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~ 550 (755)
|+++|+|++||+|.+.+..
T Consensus 466 LlScSED~svRLWsl~t~s------------------------------------------------------------- 484 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWS------------------------------------------------------------- 484 (707)
T ss_pred eeeccCCcceeeeecccce-------------------------------------------------------------
Confidence 9999999999999985432
Q ss_pred eeeecCCCceEEeccCCCCEEEEEecCCc-EEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEEC
Q 004404 551 TVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL 628 (755)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~L~~spd~-~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~ 628 (755)
.+-.++||..+|+++.|+|-+ +|||++.|++.+||......+++.|. |-+.|.|+.|+| +..|+++||.
T Consensus 485 --------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSs 555 (707)
T KOG0263|consen 485 --------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSS 555 (707)
T ss_pred --------eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCC
Confidence 233567999999999999985 69999999999999999999999996 999999999999 9999999999
Q ss_pred CCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEE
Q 004404 629 DAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (755)
Q Consensus 629 DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (755)
|.+||+||+.++..++ +.+|..+|++++|+|+|++|++|+.||.|.+||+.++.++.. +.+|.+.|.++.
T Consensus 556 D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~---------l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 556 DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ---------LKGHTGTIYSLS 626 (707)
T ss_pred CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh---------hhcccCceeEEE
Confidence 9999999999999885 557778999999999999999999999999999999988865 358999999999
Q ss_pred EccCCCeEEEEEECCCcEEEEE
Q 004404 708 FAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 708 fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
|+.+|. .|++++.|++|++||
T Consensus 627 FS~dg~-vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 627 FSRDGN-VLASGGADNSVRLWD 647 (707)
T ss_pred EecCCC-EEEecCCCCeEEEEE
Confidence 999998 899999999999999
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.3e-31 Score=261.09 Aligned_cols=292 Identities=20% Similarity=0.281 Sum_probs=239.1
Q ss_pred HHHHhcCCcHHHHHHHhhcc----cccCCCCCccccccCCCCCC---ccccccCCcccccceeEEeeccccccccCcccc
Q 004404 331 EFEMCVGHSPIVQELMRRQN----VEEGNKDSFDLNNNGSSGGG---MKSKKKGSWFKSIRTVASSVTGHKERRSSDERD 403 (755)
Q Consensus 331 e~~~~~GHs~~V~~l~~~~~----~~sgs~D~tv~~~Wd~~~g~---~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~ 403 (755)
+.+.+.||+..|..+++.|. +++++.|++|| +|+...+. .+..+..+|.+.||++|.++.|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vr-iw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g----------- 73 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVR-IWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG----------- 73 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEE-EEecCCCCcEEEEEeccccchheeeeeeecCCC-----------
Confidence 45677999999999999987 89999999999 99987533 2334557888999999988754
Q ss_pred CCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 004404 404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483 (755)
Q Consensus 404 ~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVW 483 (755)
.++++++-|.++.||....+++. +...|+||...|.|++|+++|.|||||+.|+.|-||
T Consensus 74 ------------------~~La~aSFD~t~~Iw~k~~~efe---cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 74 ------------------RYLASASFDATVVIWKKEDGEFE---CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIW 132 (312)
T ss_pred ------------------cEEEEeeccceEEEeecCCCcee---EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence 36788999999999988766654 456799999999999999999999999999999999
Q ss_pred eCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEe
Q 004404 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF 563 (755)
Q Consensus 484 dl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l 563 (755)
.+..+... .++..+
T Consensus 133 e~deddEf------------------------------------------------------------------ec~aVL 146 (312)
T KOG0645|consen 133 EIDEDDEF------------------------------------------------------------------ECIAVL 146 (312)
T ss_pred EecCCCcE------------------------------------------------------------------EEEeee
Confidence 98633211 245567
Q ss_pred ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECC---CCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECC
Q 004404 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS---SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (755)
Q Consensus 564 ~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~---t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~ 638 (755)
+.|+..|..+.|+|. ..|++++.|.+|++|+-. .-.|++++. |...|.+++|+| .|..|++++.|++|+||-..
T Consensus 147 ~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeec
Confidence 899999999999997 899999999999999876 347888886 889999999999 89999999999999999865
Q ss_pred CCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 639 ERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 639 t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
+.- ...|...++.++|. ...|++++.|+.|++|.-...-... .+.+..+....|...|++++|.|..+.+|++
T Consensus 226 ~~~---~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p--~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s 298 (312)
T KOG0645|consen 226 TDL---SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEP--SWNLLAKKEGAHEVDVNSVQWNPKVSNRLAS 298 (312)
T ss_pred cCc---chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCc--hHHHHHhhhcccccccceEEEcCCCCCceee
Confidence 321 12345688999998 4489999999999999877432212 1222233446899999999999976669999
Q ss_pred EECCCcEEEEE
Q 004404 719 TSADSRIRVVD 729 (755)
Q Consensus 719 gs~Dg~IrVWD 729 (755)
+++||.|++|.
T Consensus 299 ~~DDG~v~~W~ 309 (312)
T KOG0645|consen 299 GGDDGIVNFWE 309 (312)
T ss_pred cCCCceEEEEE
Confidence 99999999996
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=7.9e-30 Score=270.20 Aligned_cols=331 Identities=20% Similarity=0.318 Sum_probs=249.3
Q ss_pred HHHHhcCCcHHHHHHHhhcc----cccCCCCCccccccCCCC----CCccccccCCcccccceeEEeeccccccccCccc
Q 004404 331 EFEMCVGHSPIVQELMRRQN----VEEGNKDSFDLNNNGSSG----GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER 402 (755)
Q Consensus 331 e~~~~~GHs~~V~~l~~~~~----~~sgs~D~tv~~~Wd~~~----g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~ 402 (755)
++.+..+|...|...+.+|- +++|+.|.+.| +|.... +..+..+| |. + ...++...
T Consensus 170 ~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ar-i~~l~e~~~~~~~q~~lr--h~--~-----~~~~~s~~------ 233 (524)
T KOG0273|consen 170 SKAKVLRHESEVFICAWNPLRDGLLASGSGDSTAR-IWNLLENSNIGSTQLVLR--HC--I-----REGGKSVP------ 233 (524)
T ss_pred cceeeccCCCceEEEecCchhhhhhhccCCcccee-eeeehhhccccchhhhhh--hh--h-----hhhcccCC------
Confidence 34445558777777777765 88999999999 897753 11111111 00 0 00000000
Q ss_pred cCCccCCCceeeeeecCC--CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcE
Q 004404 403 DTSSEKGGRRSSSATDDS--QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI 480 (755)
Q Consensus 403 ~~~~~~g~~~~vs~~~ds--~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtV 480 (755)
...-+++.+-. ..++++|..+|.+++|+....... +|..|+++|.+|+|+..|+||++++.|+++
T Consensus 234 -------~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~------tl~~HkgPI~slKWnk~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 234 -------SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIS------TLGQHKGPIFSLKWNKKGTYILSGGVDGTT 300 (524)
T ss_pred -------ccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhh------hhhccCCceEEEEEcCCCCEEEeccCCccE
Confidence 01122333322 466899999999999998744433 355699999999999999999999999999
Q ss_pred EEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCc
Q 004404 481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKP 559 (755)
Q Consensus 481 rVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~ 559 (755)
.+||..+++....+. -+..+...+.|-.+..+ ++.+.++.+ .++.+ ...|
T Consensus 301 ilwd~~~g~~~q~f~-----~~s~~~lDVdW~~~~~F-~ts~td~~i-----------------------~V~kv~~~~P 351 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFE-----FHSAPALDVDWQSNDEF-ATSSTDGCI-----------------------HVCKVGEDRP 351 (524)
T ss_pred EEEeccCceEEEeee-----eccCCccceEEecCceE-eecCCCceE-----------------------EEEEecCCCc
Confidence 999998888776653 22223233444433333 233333333 22222 4578
Q ss_pred eEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeC--------CCcEEEEEECC
Q 004404 560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV--------DDRYFISGSLD 629 (755)
Q Consensus 560 i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~--------dg~~LaSgS~D 629 (755)
+.++.||.++|.+|.|.|. ..|++++.|+|++||.+....+.+.+. |...|..+.|+|. .+..+++++.|
T Consensus 352 ~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 352 VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD 431 (524)
T ss_pred ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC
Confidence 9999999999999999998 679999999999999999999888886 9999999999982 34689999999
Q ss_pred CcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEE
Q 004404 630 AKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (755)
Q Consensus 630 gtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (755)
++|++||+..+.++. +..|..+|++++|+|+|+++|+|+.||.|++|+++++++.+.+ .-.+.|..++|
T Consensus 432 stV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~----------~~~~~Ifel~W 501 (524)
T KOG0273|consen 432 STVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY----------QGTGGIFELCW 501 (524)
T ss_pred CeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee----------cCCCeEEEEEE
Confidence 999999999999885 4589999999999999999999999999999999999998864 34567999999
Q ss_pred ccCCCeEEEEEECCCcEEEEEC
Q 004404 709 APGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 709 sPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+..|. +|..+-.|+.++|.|.
T Consensus 502 n~~G~-kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 502 NAAGD-KLGACASDGSVCVLDL 522 (524)
T ss_pred cCCCC-EEEEEecCCCceEEEe
Confidence 99997 8999999999999873
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.6e-30 Score=265.64 Aligned_cols=286 Identities=17% Similarity=0.289 Sum_probs=248.0
Q ss_pred HHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCc
Q 004404 330 EEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS 406 (755)
Q Consensus 330 ~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~ 406 (755)
.+-+.+.||-..|..+.|+|+ ++++++|.||+ +||..+|+..+.++ ||.+.+..+++.-.|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tik-v~D~~tg~~e~~Lr-GHt~sv~di~~~a~G-------------- 162 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIK-VFDTETGELERSLR-GHTDSVFDISFDASG-------------- 162 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEE-EEEccchhhhhhhh-ccccceeEEEEecCc--------------
Confidence 445788999999999999999 88999999999 99999999988887 898887776665432
Q ss_pred cCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCc
Q 004404 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (755)
Q Consensus 407 ~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~ 486 (755)
.++++.+.|-.+.+|+...- ..+++.+.+|.-.|.+++|-|.|.+|++++.|.+|+.|++.
T Consensus 163 ---------------k~l~tcSsDl~~~LWd~~~~----~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 163 ---------------KYLATCSSDLSAKLWDFDTF----FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred ---------------cEEEecCCccchhheeHHHH----HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 34566677777999987621 33456678999999999999999999999999999999987
Q ss_pred CCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccC
Q 004404 487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566 (755)
Q Consensus 487 t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH 566 (755)
++. ++.+|.+|
T Consensus 224 tg~---------------------------------------------------------------------cv~t~~~h 234 (406)
T KOG0295|consen 224 TGY---------------------------------------------------------------------CVKTFPGH 234 (406)
T ss_pred cce---------------------------------------------------------------------eEEeccCc
Confidence 654 34556788
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEee--------------CCCcEEEEEECCC
Q 004404 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNP--------------VDDRYFISGSLDA 630 (755)
Q Consensus 567 ~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP--------------~dg~~LaSgS~Dg 630 (755)
...|..+..+.| ..+++++.|.+|++|-+.+++|...+. |.-+|-|++|-| ..+.++.+++.|+
T Consensus 235 ~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 235 SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 888999998888 457899999999999999999998886 999999999988 1236999999999
Q ss_pred cEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEc
Q 004404 631 KVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (755)
Q Consensus 631 tVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (755)
+|++||+.++.++ .+.+|.++|..++|+|.|+||+++..|+++++||+.+.+....+. .|..-|+++.|+
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~---------ah~hfvt~lDfh 385 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE---------AHEHFVTSLDFH 385 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC---------CCcceeEEEecC
Confidence 9999999999987 677888999999999999999999999999999999999887643 799999999999
Q ss_pred cCCCeEEEEEECCCcEEEEE
Q 004404 710 PGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 710 Pdg~~~L~sgs~Dg~IrVWD 729 (755)
.+.+ ++++|+-|.++++|.
T Consensus 386 ~~~p-~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAP-YVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCc-eEEeccccceeeeee
Confidence 9887 899999999999996
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.1e-28 Score=260.92 Aligned_cols=436 Identities=15% Similarity=0.204 Sum_probs=320.9
Q ss_pred cccceeeeccCCCceeEEeccccCCccceeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccC
Q 004404 289 AEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNG 365 (755)
Q Consensus 289 ~~~~~~i~~ld~g~~~~~~e~~~dG~~~~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd 365 (755)
....|.|..=-.|+.|+-. .|..-.+++++..... ..+.+|+..|+-..++|. ++||..-++|| +||
T Consensus 18 Rg~~~~ig~dpkgd~ilY~----nGksv~ir~i~~~~~~-----~iYtEH~~~vtVAkySPsG~yiASGD~sG~vR-IWd 87 (603)
T KOG0318|consen 18 RGVPIIIGGDPKGDNILYT----NGKSVIIRNIDNPASV-----DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVR-IWD 87 (603)
T ss_pred CCcceEeccCCCCCeEEEe----CCCEEEEEECCCccce-----eeeccccceeEEEEeCCCceEEeecCCcCcEE-EEe
Confidence 3444555543344444332 3444567777766665 678899999988889998 89999999999 999
Q ss_pred CCCCCcccccc-CCcccccceeEEeecccccccc---------CccccCC----ccCCCceeeeeecCCCc---EEEEeC
Q 004404 366 SSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRS---------SDERDTS----SEKGGRRSSSATDDSQD---VSFHGQ 428 (755)
Q Consensus 366 ~~~g~~~~k~k-~~~~~~v~sv~~s~~g~~~~~~---------~~~~~~~----~~~g~~~~vs~~~ds~~---~l~sg~ 428 (755)
....+..-|.. .-....|+.++..+++.+.... ...|+.. ...|+.+.+.+.+..+. .+++++
T Consensus 88 tt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~s 167 (603)
T KOG0318|consen 88 TTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGS 167 (603)
T ss_pred ccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEecc
Confidence 87643222211 1223346666666665553221 2234433 35677888777776543 378999
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEE
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~ 508 (755)
+|..|.+|.-. +..--.++..|..-|.|+.|+|||.++||++.||+|.|||=.+++.+.++.. ...|...++.
T Consensus 168 dDn~v~ffeGP-----PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~--~~aHkGsIfa 240 (603)
T KOG0318|consen 168 DDNTVAFFEGP-----PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED--SDAHKGSIFA 240 (603)
T ss_pred CCCeEEEeeCC-----CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC--CCCccccEEE
Confidence 99999999653 2222245678999999999999999999999999999999999999998844 5689999999
Q ss_pred eecCCCCceeccccCCCceeeecccccccccccccCccc---ccceeee------------------cCCCceEEeccCC
Q 004404 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV---VPETVFA------------------LSDKPICSFQGHL 567 (755)
Q Consensus 509 v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~---~~~~v~~------------------~s~k~i~~l~gH~ 567 (755)
+.|+||++.+++.+.+..+.+|..........+...... ....+|. ....+++.+.||.
T Consensus 241 lsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn 320 (603)
T KOG0318|consen 241 LSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN 320 (603)
T ss_pred EEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc
Confidence 999999999999999988888776543322222221111 0111221 1235778899999
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE--
Q 004404 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-- 642 (755)
Q Consensus 568 ~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~-- 642 (755)
..|++|..+|+ .+|++|+.||.|.-|+..++..-+..+ |...|.+++.+. ...+++++.|.++++.++.....
T Consensus 321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~~~~~t~ 398 (603)
T KOG0318|consen 321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE--SGELFTIGWDDTLRVISLKDNGYTK 398 (603)
T ss_pred cceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC--CCcEEEEecCCeEEEEecccCcccc
Confidence 99999999998 789999999999999999998877764 999999999874 46688899999999997743210
Q ss_pred ----------E--------------------Ee--------ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 643 ----------V--------------------DW--------NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 643 ----------v--------------------~~--------~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
. -+ ........+++++|++..+++|+.|+.|+||.+..+.+.
T Consensus 399 ~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ 478 (603)
T KOG0318|consen 399 SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK 478 (603)
T ss_pred cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc
Confidence 0 00 111134678999999999999999999999999987765
Q ss_pred eccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcce-EEeecCCccEEEEEEEE
Q 004404 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLV-HKFKGENYVQYMVCIVL 751 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll-~~~~GH~~~V~sv~fs~ 751 (755)
... ++..|..+|+.++|+|++. +|+++...+.|.+|| ..+.. ..+.-|+..|++++++|
T Consensus 479 ee~-------~~~~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP 540 (603)
T KOG0318|consen 479 EEA-------KLLEHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP 540 (603)
T ss_pred cee-------eeecccCCceEEEECCCCc-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC
Confidence 432 2458999999999999998 899999999999999 34433 34445999999999986
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9.6e-30 Score=281.65 Aligned_cols=393 Identities=16% Similarity=0.185 Sum_probs=309.8
Q ss_pred eeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc-----cccCCCCCccccccCCCCCCc-cccccCCcccccceeEEee
Q 004404 317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN-----VEEGNKDSFDLNNNGSSGGGM-KSKKKGSWFKSIRTVASSV 390 (755)
Q Consensus 317 ~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~-----~~sgs~D~tv~~~Wd~~~g~~-~~k~k~~~~~~v~sv~~s~ 390 (755)
++||...+... -.|.||-+.|.++.|.|+ +++|..|++++ +|++.++.. ..+.+ .|...+.+++++.
T Consensus 130 ~VWdi~~~~~t-----h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~-vwnl~~~~tcl~~~~-~H~S~vtsL~~~~ 202 (775)
T KOG0319|consen 130 KVWDIKNGYCT-----HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR-VWNLNDKRTCLHTMI-LHKSAVTSLAFSE 202 (775)
T ss_pred EEEEeeCCEEE-----EEecCCCceEEEEEeCCccchhheeecCCCceEE-EEEcccCchHHHHHH-hhhhheeeeeecc
Confidence 58888888888 789999999999999998 79999999999 999987765 55665 8889999999998
Q ss_pred ccccccccCcc-----ccCCc--------cCCCceeeeeecC---C-CcEEEEeCCCcEEEEeeCCCCccc---------
Q 004404 391 TGHKERRSSDE-----RDTSS--------EKGGRRSSSATDD---S-QDVSFHGQERVRVRQYGKSCKDLT--------- 444 (755)
Q Consensus 391 ~g~~~~~~~~~-----~~~~~--------~~g~~~~vs~~~d---s-~~~l~sg~~dg~Vriwd~~~~~~~--------- 444 (755)
++...-...++ |+... ....-..+..... . ..++++.+.++.+++|+..+.+..
T Consensus 203 d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~ 282 (775)
T KOG0319|consen 203 DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE 282 (775)
T ss_pred CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch
Confidence 87653322222 33211 0011111111111 1 236788889999999987654321
Q ss_pred -----------------------------ceeeeeEeecccCCEEEEEE-cCCCCEEEEEECCCcEEEEeCcCCceeeee
Q 004404 445 -----------------------------ALYKCQEIQAHNGSIWSIKF-SLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (755)
Q Consensus 445 -----------------------------~~~~~q~l~gH~~~I~sI~f-Spdg~~LaTgs~DGtVrVWdl~t~~~~~~l 494 (755)
.+.....|-|..+.|..|+| .|+.++||.++..+.+|++++.+..+. +
T Consensus 283 e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--i 360 (775)
T KOG0319|consen 283 EIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--I 360 (775)
T ss_pred hhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE--E
Confidence 01111224467788999998 457789999999999999988776654 3
Q ss_pred ecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEE
Q 004404 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (755)
Q Consensus 495 ~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~ 574 (755)
..+|...+..+.....+-++++++.+..+..|+...... ..-++....+|...|.+++
T Consensus 361 ----i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~------------------~~~~~a~~~gH~~svgava 418 (775)
T KOG0319|consen 361 ----IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS------------------KSLCVAQANGHTNSVGAVA 418 (775)
T ss_pred ----EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc------------------hhhhhhhhcccccccceee
Confidence 478899999988777788999999999887666532111 1134556789999999999
Q ss_pred ecCC--cEEEEEeCCCcEEEEECCCCc---EEEEe-------ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE
Q 004404 575 WSKS--QHLLSSSMDKTVRLWHLSSKT---CLKIF-------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (755)
Q Consensus 575 ~spd--~~LaSgs~DgtVrLWDl~t~~---~~~~~-------~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~ 642 (755)
++.. ..|+++|.|.++++|++...+ ....+ .|...|+||+++| +..+|++||.|.+.+||+++...+
T Consensus 419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l 497 (775)
T KOG0319|consen 419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRL 497 (775)
T ss_pred ecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceE
Confidence 9775 689999999999999997621 11122 2999999999999 899999999999999999998777
Q ss_pred E-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 643 V-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 643 v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
. .+.+|...|.+|.|+|..+.+++++.|++|+||.+.+...+.++. +|...|..+.|..+|. +|++++.
T Consensus 498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e---------GH~~aVlra~F~~~~~-qliS~~a 567 (775)
T KOG0319|consen 498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE---------GHTSAVLRASFIRNGK-QLISAGA 567 (775)
T ss_pred EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec---------CccceeEeeeeeeCCc-EEEeccC
Confidence 7 556777899999999999999999999999999999999987754 9999999999999998 8999999
Q ss_pred CCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 722 DSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 722 Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
||-|+||+ +.+|++++.+|++.|++++-.+
T Consensus 568 dGliKlWnikt~eC~~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 568 DGLIKLWNIKTNECEMTLDAHNDRVWALSVSP 599 (775)
T ss_pred CCcEEEEeccchhhhhhhhhccceeEEEeecC
Confidence 99999999 6899999999999999987654
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=3.9e-28 Score=239.58 Aligned_cols=289 Identities=15% Similarity=0.227 Sum_probs=243.8
Q ss_pred CCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccc
Q 004404 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (755)
Q Consensus 419 ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~ 498 (755)
+.+.++++++.|.+||+|...++. +..+++...+.|+.+.+.|++++||+++. ..||+||+.+...... ..
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~-----C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv---~t 78 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGI-----CSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPV---AT 78 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCe-----EEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCce---eE
Confidence 456778999999999999887665 44566666778999999999999999876 5799999988765311 11
Q ss_pred ccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd 578 (755)
..+|.+.+..+.|..+|+.+++++.++.+ ++|++..........|..+|+++..+|+
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~-----------------------kIWdlR~~~~qR~~~~~spVn~vvlhpn 135 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTV-----------------------KIWDLRSLSCQRNYQHNSPVNTVVLHPN 135 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecCCCceE-----------------------EEEeccCcccchhccCCCCcceEEecCC
Confidence 37888999999999999999999999998 4555554444455568899999999998
Q ss_pred -cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE------E-EeccC
Q 004404 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV------V-DWNDL 648 (755)
Q Consensus 579 -~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~------v-~~~~~ 648 (755)
..|++|..+|.|++||+.+..+.+.+- ....|.++...| ++.+|+.+...|+.++|++.+.+. + ++..|
T Consensus 136 QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 789999999999999999988877764 567899999999 999999999999999999976542 2 45567
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEE
Q 004404 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 649 ~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVW 728 (755)
...+..+.+|||+++||+++.|.+++||++++. +..+ ..+.+|+..+.+.+|+.+|. +|++|+.|+.+|+|
T Consensus 215 ~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle-------~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW 285 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLE-------LVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLW 285 (311)
T ss_pred cceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeE-------EEeecCCceEEeeeeccCcc-EEEecCCCCceeec
Confidence 789999999999999999999999999999987 3322 22459999999999999998 99999999999999
Q ss_pred E--CCcceEEeecCCccEEEEEE
Q 004404 729 D--GIDLVHKFKGENYVQYMVCI 749 (755)
Q Consensus 729 D--~~~ll~~~~GH~~~V~sv~f 749 (755)
| .++.+..+.||...-.++++
T Consensus 286 ~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 286 DLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred ccccCceeeecCCcccccEEEEe
Confidence 9 68899999999998766664
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.4e-28 Score=246.52 Aligned_cols=254 Identities=22% Similarity=0.408 Sum_probs=213.4
Q ss_pred eeeEeecccCCEEEEEEcCC-CCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCc
Q 004404 448 KCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (755)
Q Consensus 448 ~~q~l~gH~~~I~sI~fSpd-g~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~ 526 (755)
...++++|++.|+.++..+. ...|++++.|.+|.+|++.......-.+.....+|...+..+..++++.++.+++.++.
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 34568899999999999986 56899999999999999976644333333345789999999999999999999999888
Q ss_pred eeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEe
Q 004404 527 LEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (755)
Q Consensus 527 i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~ 604 (755)
+ ++|++. +++.+.|.||...|++++|+++ ..+++|+.|++|++|++.. .|..++
T Consensus 87 l-----------------------rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~ 142 (315)
T KOG0279|consen 87 L-----------------------RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTI 142 (315)
T ss_pred E-----------------------EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEE
Confidence 7 566664 4889999999999999999998 7899999999999999875 444444
Q ss_pred -e--cCCceEEEEEeeCC-CcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 605 -S--HSDYVTCIQFNPVD-DRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 605 -~--h~~~VtsVafsP~d-g~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
. +.+.|+|+.|+|.. ..+|++++.|++|++||+++.++. .+.+|...++.++++|||..+++|+.||.+.+||+.
T Consensus 143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 143 HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence 3 47899999999932 679999999999999999998877 566778899999999999999999999999999999
Q ss_pred CCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEe
Q 004404 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKF 737 (755)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~ 737 (755)
.++.++.+ .|...|.+++|+|+. +.+.+..+..|+||| .+.++..+
T Consensus 223 ~~k~lysl----------~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 223 EGKNLYSL----------EAFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred CCceeEec----------cCCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhhc
Confidence 99987653 788999999999986 556666667799999 34444433
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=3.1e-29 Score=257.62 Aligned_cols=288 Identities=19% Similarity=0.339 Sum_probs=245.2
Q ss_pred HHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccC
Q 004404 332 FEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK 408 (755)
Q Consensus 332 ~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~ 408 (755)
+.-+.||...|+++++.|- +++||.|+|+. +||+++|+.+..+. ||...++.|+.+..
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~Drtik-IwDlatg~Lkltlt-Ghi~~vr~vavS~r----------------- 204 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIK-IWDLATGQLKLTLT-GHIETVRGVAVSKR----------------- 204 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeE-EEEcccCeEEEeec-chhheeeeeeeccc-----------------
Confidence 3557999999999999997 99999999999 99999999888887 78777887777642
Q ss_pred CCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCC
Q 004404 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (755)
Q Consensus 409 g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~ 488 (755)
..+++++..|+.|+.||+...++..- +.||-..|.|++.+|.-..|+||+.|.+++|||+.+.
T Consensus 205 ------------HpYlFs~gedk~VKCwDLe~nkvIR~-----YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 205 ------------HPYLFSAGEDKQVKCWDLEYNKVIRH-----YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred ------------CceEEEecCCCeeEEEechhhhhHHH-----hccccceeEEEeccccceeEEecCCcceEEEeeeccc
Confidence 24679999999999999987776544 4699999999999999999999999999999998653
Q ss_pred ceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCC
Q 004404 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (755)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~ 568 (755)
. .+..+.||..
T Consensus 268 ~---------------------------------------------------------------------~V~~l~GH~~ 278 (460)
T KOG0285|consen 268 A---------------------------------------------------------------------SVHVLSGHTN 278 (460)
T ss_pred c---------------------------------------------------------------------eEEEecCCCC
Confidence 2 3566789999
Q ss_pred CEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-Ee
Q 004404 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DW 645 (755)
Q Consensus 569 ~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~ 645 (755)
+|..+.+.|- ..+++|+.|++|++||+..++...++. |...|.+++.+| ....|++++.| .|+-|++..+..+ .+
T Consensus 279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 279 PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQNL 356 (460)
T ss_pred cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhcc
Confidence 9999999884 899999999999999999999888886 899999999999 88899999877 6899999998876 44
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcE
Q 004404 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (755)
Q Consensus 646 ~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~I 725 (755)
..+...|++++...|| ++++|+.+|.+.+||.+++...+..+...+.-.+ .....|++.+|...|. .|++|..|.+|
T Consensus 357 sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl-~sEagI~as~fDktg~-rlit~eadKtI 433 (460)
T KOG0285|consen 357 SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSL-ESEAGIFASCFDKTGS-RLITGEADKTI 433 (460)
T ss_pred ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcc-ccccceeEEeecccCc-eEEeccCCcce
Confidence 5666789999999887 8999999999999999998776655322222122 2356799999999887 89999999999
Q ss_pred EEEE
Q 004404 726 RVVD 729 (755)
Q Consensus 726 rVWD 729 (755)
++|.
T Consensus 434 k~~k 437 (460)
T KOG0285|consen 434 KMYK 437 (460)
T ss_pred EEEe
Confidence 9997
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.1e-27 Score=263.07 Aligned_cols=315 Identities=18% Similarity=0.244 Sum_probs=239.2
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCC------------
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES------------ 488 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~------------ 488 (755)
..++++|+.|..+|+|.....+. +....+.+|+++|.+.-|..+...|+|.+.||.|.+|.....
T Consensus 157 Sr~l~~gsrD~s~rl~~v~~~k~---~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~e 233 (893)
T KOG0291|consen 157 SRLLVTGSRDLSARLFGVDGNKN---LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEE 233 (893)
T ss_pred CceEEeccccceEEEEEeccccc---cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccc
Confidence 36689999999999999875554 234457899999999999999999999999999999987611
Q ss_pred -----------ce-eeee----e-cccccCccccEEEeecCCCCceeccccCCCceeeecccccccc--c----------
Q 004404 489 -----------ER-KGEL----L-EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR--K---------- 539 (755)
Q Consensus 489 -----------~~-~~~l----~-~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~--~---------- 539 (755)
+. ...+ . ..........+.+.++.+...+++++...+.+........... .
T Consensus 234 g~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~ 313 (893)
T KOG0291|consen 234 GSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTV 313 (893)
T ss_pred ccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEE
Confidence 10 0000 0 0001122256778888888899998887776644443332111 1
Q ss_pred ccccCcccc--------cceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCC
Q 004404 540 SLSLDHMVV--------PETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608 (755)
Q Consensus 540 s~s~d~~~~--------~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~ 608 (755)
.++..+.++ ...+|.. ++.-+...++|...+++++++|| +++++|+.||+|+|||...+-|+.+|. |++
T Consensus 314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts 393 (893)
T KOG0291|consen 314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS 393 (893)
T ss_pred EecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC
Confidence 111111111 0123333 33456677899999999999999 789999999999999999999999997 999
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCC--CEEEEEEccCCCEEEEEECCC-cEEEEECCCCeeee
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE--MVTAACYTPDGQGALVGSYKG-SCHLYNTSENKLQQ 685 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~--~VtsvafSPdG~~LasGs~DG-~I~lwDl~~~~~~~ 685 (755)
.|+.++|+. .++.+++.+.||+|+.||+...+..+++..+. ...+++..|.|..+.+|+.|. .|++|++++|+++.
T Consensus 394 ~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 394 GVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD 472 (893)
T ss_pred ceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee
Confidence 999999999 99999999999999999999888877766665 456788888899999999886 49999999999997
Q ss_pred ccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECC---cceEEeecCCccEEEEEEE
Q 004404 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI---DLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~---~ll~~~~GH~~~V~sv~fs 750 (755)
.+ .+|.++|.++.|+|.+. .|+++|.|.+||+||.. ..+.++. +...+..++|.
T Consensus 473 iL---------sGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfr 529 (893)
T KOG0291|consen 473 IL---------SGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFR 529 (893)
T ss_pred hh---------cCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEc
Confidence 64 49999999999999998 89999999999999932 1233332 44555555554
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.1e-26 Score=239.43 Aligned_cols=264 Identities=24% Similarity=0.447 Sum_probs=221.7
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..++.+..++.|++|+...++ ....+..|...|..+.|+|++++|++++.||.|++|++.+++....+ ..
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~-----~~ 91 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-----TG 91 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-----ec
Confidence 456777889999999987655 23456789999999999999999999999999999999887655554 34
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEEEEecCC-c
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-Q 579 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L~~spd-~ 579 (755)
+...+..+.+.+++.+++++..++.+ .+|++. .+.+..+..|...|.+++|+|+ .
T Consensus 92 ~~~~i~~~~~~~~~~~~~~~~~~~~i-----------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 92 HTSYVSSVAFSPDGRILSSSSRDKTI-----------------------KVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred cCCcEEEEEEcCCCCEEEEecCCCeE-----------------------EEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence 55678889999988888887656655 344443 5667777889999999999997 5
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec-cCCCCEEEEEE
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACY 657 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~-~~~~~Vtsvaf 657 (755)
++++++.|+.|++||+..++.+..+. |...|.+++|+| +++.|++++.|+.|++||+.+++.+... .+...+.+++|
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF 227 (289)
T ss_pred EEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE
Confidence 56666669999999999888888886 788999999999 8889999999999999999988887666 67779999999
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 658 SPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+|++.++++++.+|.|++|++.+++....+ ..|...|.++.|+|++. +|++++.|+.|++|+
T Consensus 228 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 228 SPDGYLLASGSEDGTIRVWDLRTGECVQTL---------SGHTNSVTSLAWSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCCcEEEEEcCCceeEEEc---------cccCCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence 999989988888999999999987766543 26888999999999987 899999999999996
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=6.3e-29 Score=259.44 Aligned_cols=277 Identities=19% Similarity=0.305 Sum_probs=229.1
Q ss_pred CceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc
Q 004404 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (755)
Q Consensus 410 ~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~ 489 (755)
+...+..+.++.. +++|+..|.+.+|+...-.+ ...+++|..+|.+|.|+++|.+++||+.+|.|++|+..-..
T Consensus 98 ~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fnF-----EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 98 PVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFNF-----ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ceeeEEEcCCCce-eEeecccccEEEecCceeeH-----HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 3455566665543 68889999999998742222 12357999999999999999999999999999999975432
Q ss_pred eeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCC
Q 004404 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD 569 (755)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~ 569 (755)
. ..+ ...+...|..++++|....+++++.++.+.++... ..++-..+.||.-.
T Consensus 172 V-k~~----~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~----------------------~~kee~vL~GHgwd 224 (464)
T KOG0284|consen 172 V-KII----QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR----------------------MPKEERVLRGHGWD 224 (464)
T ss_pred h-HHh----hHhhhhhhheeccCCCCceeEEecCCCeEEEEecc----------------------CCchhheeccCCCC
Confidence 2 221 23344788999999999999999999988433322 33555677999999
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-Eec
Q 004404 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWN 646 (755)
Q Consensus 570 V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~ 646 (755)
|.++.|+|. +.+++++.|..|++||.+++.|+.++. |...|..+.|+| ++++|++++.|..++++|+++.+.+ ...
T Consensus 225 VksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r 303 (464)
T KOG0284|consen 225 VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYR 303 (464)
T ss_pred cceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhh
Confidence 999999998 899999999999999999999999996 999999999999 8999999999999999999965544 556
Q ss_pred cCCCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcE
Q 004404 647 DLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (755)
Q Consensus 647 ~~~~~VtsvafSP-dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~I 725 (755)
.|...|+++.|+| ...+|.+|+.||.|..|.+...+.+..+. .+|...|++++|+|-|. +|++|+.|.++
T Consensus 304 ~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~--------~AHd~~iwsl~~hPlGh-il~tgsnd~t~ 374 (464)
T KOG0284|consen 304 GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP--------PAHDGEIWSLAYHPLGH-ILATGSNDRTV 374 (464)
T ss_pred cchhhheeeccccccccceeeccCCCceEEEeccccccccCCC--------cccccceeeeeccccce-eEeecCCCcce
Confidence 6889999999999 45677889999999999998555555433 38999999999999997 89999999999
Q ss_pred EEEE
Q 004404 726 RVVD 729 (755)
Q Consensus 726 rVWD 729 (755)
++|.
T Consensus 375 rfw~ 378 (464)
T KOG0284|consen 375 RFWT 378 (464)
T ss_pred eeec
Confidence 9997
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=2.4e-27 Score=234.05 Aligned_cols=249 Identities=19% Similarity=0.349 Sum_probs=211.1
Q ss_pred CEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccc
Q 004404 469 RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV 548 (755)
Q Consensus 469 ~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~ 548 (755)
-+|+|+|.|.+||+|...++.+...+. -....+..+...|++..|+++.....
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-----h~dsqVNrLeiTpdk~~LAaa~~qhv---------------------- 63 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-----HPDSQVNRLEITPDKKDLAAAGNQHV---------------------- 63 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-----cCccceeeEEEcCCcchhhhccCCee----------------------
Confidence 489999999999999999999998874 33466788899999998888744322
Q ss_pred cceeeec---CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEE
Q 004404 549 PETVFAL---SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI 624 (755)
Q Consensus 549 ~~~v~~~---s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~La 624 (755)
+++++ ...|+.+|.+|...|+.+.|.-+ ..+++|+.||++||||++...+.+.+.|..+|++|..+| +...|+
T Consensus 64 --RlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLi 140 (311)
T KOG0315|consen 64 --RLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELI 140 (311)
T ss_pred --EEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecC-CcceEE
Confidence 23333 34589999999999999999988 569999999999999999999999999999999999999 888999
Q ss_pred EEECCCcEEEEECCCCcEEEec--cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCC
Q 004404 625 SGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (755)
Q Consensus 625 SgS~DgtVrIWDl~t~~~v~~~--~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (755)
+|..+|.|++||+.+..+.... .....|.++...|||.+|+++...|.+++|++-+.+....+ .+..+++.|.+.
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l---~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL---EPVHKFQAHNGH 217 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc---eEhhheecccce
Confidence 9999999999999887554322 23368999999999999999999999999999885544332 233567899999
Q ss_pred eEEEEEccCCCeEEEEEECCCcEEEEECC---cceEEeecCCccEEEEEEEE
Q 004404 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGI---DLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 703 Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~---~ll~~~~GH~~~V~sv~fs~ 751 (755)
|+.+.++|+++ +|+++|.|.+++||++. ++...++||...++..+|+.
T Consensus 218 il~C~lSPd~k-~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~ 268 (311)
T KOG0315|consen 218 ILRCLLSPDVK-YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA 268 (311)
T ss_pred EEEEEECCCCc-EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc
Confidence 99999999998 89999999999999943 55678899999999999863
No 24
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=263.75 Aligned_cols=259 Identities=19% Similarity=0.310 Sum_probs=221.5
Q ss_pred EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeee
Q 004404 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 451 ~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
++.||...|.+++||.+...++||+. +.|+||+..+.++++++. ...+.+..|-|...+++.+...+.+.
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~-------~~y~l~~~Fvpgd~~Iv~G~k~Gel~-- 437 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTIT-------CGYILASKFVPGDRYIVLGTKNGELQ-- 437 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEec-------cccEEEEEecCCCceEEEeccCCceE--
Confidence 46789999999999999888888765 689999999999998873 23677888999999998888877663
Q ss_pred cccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCC-----CcE---
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS-----KTC--- 600 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t-----~~~--- 600 (755)
++++ +...+-+.++|.+.|+.|+.+|+ ..+++||.|++|++||..- +..
T Consensus 438 ---------------------vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ 496 (888)
T KOG0306|consen 438 ---------------------VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV 496 (888)
T ss_pred ---------------------EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence 3333 33445567799999999999998 6699999999999999741 111
Q ss_pred -----EEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE-EEeccCCCCEEEEEEccCCCEEEEEECCCcEE
Q 004404 601 -----LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCH 674 (755)
Q Consensus 601 -----~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~-v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~ 674 (755)
.+++...+.|.|+.++| |+++|+.+-.|.+|+||-+.+-+. +.+++|.-+|.+|.++||++.+++|+.|.+|+
T Consensus 497 lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred eeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceE
Confidence 13445678999999999 999999999999999999999775 48899999999999999999999999999999
Q ss_pred EEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 675 LYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 675 lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+|-+.-|.+... +.+|+..|.++.|.|... .++++|.|+.|+-|| ..+.++++.||...|++++.+|
T Consensus 576 iWGLdFGDCHKS---------~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 576 IWGLDFGDCHKS---------FFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP 644 (888)
T ss_pred Eeccccchhhhh---------hhcccCceeEEEEcccce-eEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC
Confidence 999998887754 349999999999999765 899999999999998 4789999999999999999876
No 25
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=7.3e-28 Score=249.72 Aligned_cols=318 Identities=20% Similarity=0.340 Sum_probs=244.5
Q ss_pred cHHHHHHhcCCcHHHHHHHhhcc-cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCc
Q 004404 328 TIEEFEMCVGHSPIVQELMRRQN-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS 406 (755)
Q Consensus 328 t~~e~~~~~GHs~~V~~l~~~~~-~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~ 406 (755)
+.-+.+...=|-+.|.++...+. +.+|+.|+++| +|+.. |......- ||...|++++....
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~~~~IltgsYDg~~r-iWd~~-Gk~~~~~~-Ght~~ik~v~~v~~--------------- 155 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGASKWILTGSYDGTSR-IWDLK-GKSIKTIV-GHTGPIKSVAWVIK--------------- 155 (423)
T ss_pred CCCCccccccchhhhhhhcccCceEEEeecCCeeE-EEecC-CceEEEEe-cCCcceeeeEEEec---------------
Confidence 34444566669999999998877 89999999999 99884 33333333 66666666555432
Q ss_pred cCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCc
Q 004404 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (755)
Q Consensus 407 ~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~ 486 (755)
+.....+++++.|.++++|....++..- ...+.-+||..+|-+|...++|..+++|+.|.+|+||+..
T Consensus 156 -----------n~~~~~fvsas~Dqtl~Lw~~~~~~~~~-~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 156 -----------NSSSCLFVSASMDQTLRLWKWNVGENKV-KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVE 223 (423)
T ss_pred -----------CCccceEEEecCCceEEEEEecCchhhh-hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccC
Confidence 1112256888999999999887666531 1122234999999999999999999999999999999943
Q ss_pred CCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccC
Q 004404 487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566 (755)
Q Consensus 487 t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH 566 (755)
+.. ..++.... + .+..... . .--.....|+..+.||
T Consensus 224 ~~~-~~~~E~~s-----~-------------------------~rrk~~~--~-----------~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 224 TDE-EDELESSS-----N-------------------------RRRKKQK--R-----------EKEGGTRTPLVTLEGH 259 (423)
T ss_pred CCc-cccccccc-----h-------------------------hhhhhhh--h-----------hhcccccCceEEeccc
Confidence 221 11110000 0 0000000 0 0001144688899999
Q ss_pred CCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc--EE-
Q 004404 567 LDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VV- 643 (755)
Q Consensus 567 ~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~--~v- 643 (755)
...|.++.|++...+++++.|.+|+.||+.++.++.++..+..++|+.++| ..++|++|+.|..|++||.+++. ++
T Consensus 260 t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~ 338 (423)
T KOG0313|consen 260 TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVS 338 (423)
T ss_pred ccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeE
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999998753 33
Q ss_pred -EeccCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCe-eeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 644 -DWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENK-LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 644 -~~~~~~~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~-~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
.+..|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ .+..+ .+|...|.++.|...+ .|++|+
T Consensus 339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI---------~~h~DKvl~vdW~~~~--~IvSGG 407 (423)
T KOG0313|consen 339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI---------AGHNDKVLSVDWNEGG--LIVSGG 407 (423)
T ss_pred EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee---------ccCCceEEEEeccCCc--eEEecc
Confidence 678899999999999955 667889999999999999877 55443 3899999999999865 799999
Q ss_pred CCCcEEEEECC
Q 004404 721 ADSRIRVVDGI 731 (755)
Q Consensus 721 ~Dg~IrVWD~~ 731 (755)
.|++|+|+.+.
T Consensus 408 aD~~l~i~~~~ 418 (423)
T KOG0313|consen 408 ADNKLRIFKGS 418 (423)
T ss_pred CcceEEEeccc
Confidence 99999999753
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.5e-28 Score=249.53 Aligned_cols=262 Identities=23% Similarity=0.370 Sum_probs=232.5
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
.+.+.+|..+|+.+.|+|+-..+++++.|.+|++||..+++....+ .+|...+..+.+...|.++++++.+-.+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-----rGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-----RGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-----hccccceeEEEEecCccEEEecCCccchh
Confidence 3556789999999999999999999999999999999999986654 78888899999999999999987776543
Q ss_pred eecccccccccccccCcccccceeeecC--CCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALS--DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s--~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~ 605 (755)
+|+.. .++++.+.+|...|.+++|-|. .++++++.|.+|+.|++.++.|+.+|.
T Consensus 176 -----------------------LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~ 232 (406)
T KOG0295|consen 176 -----------------------LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP 232 (406)
T ss_pred -----------------------heeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc
Confidence 33332 2567778899999999999997 899999999999999999999999997
Q ss_pred -cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccC---------------CCEEEEEE
Q 004404 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPD---------------GQGALVGS 668 (755)
Q Consensus 606 -h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPd---------------G~~LasGs 668 (755)
|...|..++.+. ||.++++|+.|.+|++|-+.++++. .+..|..+|-+++|.|. ++++++++
T Consensus 233 ~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred CchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 999999999999 9999999999999999999998765 44567778888988662 36899999
Q ss_pred CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEE
Q 004404 669 YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYM 746 (755)
Q Consensus 669 ~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~s 746 (755)
.|++|++||+.++.++.++ .+|...|.+++|+|.|+ +|+++.+|++++||| ...++..+..|..-|.+
T Consensus 312 rDktIk~wdv~tg~cL~tL---------~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~ 381 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGMCLFTL---------VGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS 381 (406)
T ss_pred ccceEEEEeccCCeEEEEE---------ecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence 9999999999999988764 49999999999999998 999999999999999 68899999999999999
Q ss_pred EEE
Q 004404 747 VCI 749 (755)
Q Consensus 747 v~f 749 (755)
+.|
T Consensus 382 lDf 384 (406)
T KOG0295|consen 382 LDF 384 (406)
T ss_pred Eec
Confidence 887
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=4.6e-27 Score=249.30 Aligned_cols=288 Identities=18% Similarity=0.292 Sum_probs=238.8
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccce----e-eeeEeec----ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceee
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTAL----Y-KCQEIQA----HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~----~-~~q~l~g----H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~ 492 (755)
.++++|..+...++|++..+..... + ......+ ....|++++|+.+|.+||||+.||.++||+.. +....
T Consensus 192 ~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~ 270 (524)
T KOG0273|consen 192 GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLIS 270 (524)
T ss_pred hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhh
Confidence 3578899999999999874111100 0 0000112 23579999999999999999999999999974 33344
Q ss_pred eeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEE
Q 004404 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVL 571 (755)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~ 571 (755)
.+ ..|..+|+.+.|+..|+++++++.++.+ .+|+. ++.....|.-|..+-.
T Consensus 271 tl-----~~HkgPI~slKWnk~G~yilS~~vD~tt-----------------------ilwd~~~g~~~q~f~~~s~~~l 322 (524)
T KOG0273|consen 271 TL-----GQHKGPIFSLKWNKKGTYILSGGVDGTT-----------------------ILWDAHTGTVKQQFEFHSAPAL 322 (524)
T ss_pred hh-----hccCCceEEEEEcCCCCEEEeccCCccE-----------------------EEEeccCceEEEeeeeccCCcc
Confidence 43 6788999999999999999999888876 34444 5566677888888888
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCC
Q 004404 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLH 649 (755)
Q Consensus 572 ~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~ 649 (755)
++.|-.+..|++++.|+.|+|+.+....++.++. |.+.|.+|.|+| .+.+|+++|.|++++||++...... .+..|.
T Consensus 323 DVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs 401 (524)
T KOG0273|consen 323 DVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS 401 (524)
T ss_pred ceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhc
Confidence 9999989999999999999999999999999986 999999999999 9999999999999999998776655 677788
Q ss_pred CCEEEEEEccCC---------CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 650 EMVTAACYTPDG---------QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 650 ~~VtsvafSPdG---------~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
..|..+.|+|.| ..|++++.|++|++||+..+.++..+ ..|+.+|.+++|+|+|. ++++|+
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f---------~kH~~pVysvafS~~g~-ylAsGs 471 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL---------MKHQEPVYSVAFSPNGR-YLASGS 471 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee---------ccCCCceEEEEecCCCc-EEEecC
Confidence 899999999965 46899999999999999999988764 48999999999999998 899999
Q ss_pred CCCcEEEEE--CCcceEEeecCCccEEEEEEE
Q 004404 721 ADSRIRVVD--GIDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 721 ~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs 750 (755)
.||.|.+|+ .+++++.+.+- +.|+.++|.
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn 502 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQGT-GGIFELCWN 502 (524)
T ss_pred CCCeeEeccccchheeEeecCC-CeEEEEEEc
Confidence 999999999 57888888764 447777664
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.1e-27 Score=232.62 Aligned_cols=268 Identities=19% Similarity=0.332 Sum_probs=219.9
Q ss_pred eeeeeEeecccCCEEEEEEcCC-CCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCC
Q 004404 446 LYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (755)
Q Consensus 446 ~~~~q~l~gH~~~I~sI~fSpd-g~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d 524 (755)
+...+.+++|++.|+.++|+|- |..|||||.|+.|+||++..+.. .........+|...+..++|+|.+.+|++++.+
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 4456778999999999999997 88999999999999999975221 222222356899999999999999999999998
Q ss_pred CceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCC---cE
Q 004404 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK---TC 600 (755)
Q Consensus 525 ~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~---~~ 600 (755)
....++.... -.-+++..+.||..+|.+++|+++ ++||+++.|+.|.||.+..+ +|
T Consensus 83 ~t~~Iw~k~~--------------------~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 83 ATVVIWKKED--------------------GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred ceEEEeecCC--------------------CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence 8775443331 123678899999999999999998 78999999999999999854 56
Q ss_pred EEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECC-C--CcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 004404 601 LKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-E--RQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (755)
Q Consensus 601 ~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~-t--~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~l 675 (755)
+..++ |...|..+.|+| ...+|++++.|.+|++|.-. . ..++ .+..+...|.+++|+|.|..|++++.|++++|
T Consensus 143 ~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 77776 999999999999 89999999999999999876 2 2344 45556679999999999999999999999999
Q ss_pred EECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--------Ccce-EEeecCCccEEE
Q 004404 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--------IDLV-HKFKGENYVQYM 746 (755)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--------~~ll-~~~~GH~~~V~s 746 (755)
|-....-. ..|...+..+.|. ++ .|++++.|+.|+||.. .+++ .+-..|...|++
T Consensus 222 w~~~~~~~-------------~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs 285 (312)
T KOG0645|consen 222 WRLYTDLS-------------GMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS 285 (312)
T ss_pred eeeccCcc-------------hhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce
Confidence 98662211 2578899999999 55 7999999999999971 2333 356678889999
Q ss_pred EEEEE
Q 004404 747 VCIVL 751 (755)
Q Consensus 747 v~fs~ 751 (755)
+.+.|
T Consensus 286 V~w~p 290 (312)
T KOG0645|consen 286 VQWNP 290 (312)
T ss_pred EEEcC
Confidence 99887
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=4.3e-26 Score=235.12 Aligned_cols=263 Identities=26% Similarity=0.457 Sum_probs=219.6
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
+.+++|.++|.+++|+|++++|++++.||.|++|++.+.+....+ ..+...+..+.+.+++..++++..++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~~~~i-- 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-----KGHTGPVRDVAASADGTYLASGSSDKTI-- 75 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-----ecCCcceeEEEECCCCCEEEEEcCCCeE--
Confidence 456789999999999999999999999999999999877644443 3455667788899998888887777766
Q ss_pred ecccccccccccccCcccccceeeecCC-CceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-c
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~s~-k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h 606 (755)
.+|+... +.+..+..|...|.++.|+++ ..+++++.|+.|++||+.+++....+. |
T Consensus 76 ---------------------~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 134 (289)
T cd00200 76 ---------------------RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH 134 (289)
T ss_pred ---------------------EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC
Confidence 3444433 567778889999999999998 556666669999999999888888887 8
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe-ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeee
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~-~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~ 685 (755)
...|.+++|+| ++.++++++.|+.|++||+++++.+.. ..+...+.+++|+|+++.|++++.++.|++||+..++...
T Consensus 135 ~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 135 TDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred CCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence 89999999999 788888888899999999998776643 4455689999999999999999999999999999877665
Q ss_pred ccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEeecCCccEEEEEEEE
Q 004404 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~~GH~~~V~sv~fs~ 751 (755)
.+ ..|...|.++.|+|++. ++++++.|+.|++||. ++.+..+.+|...+..+++.+
T Consensus 214 ~~---------~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 271 (289)
T cd00200 214 TL---------RGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP 271 (289)
T ss_pred ch---------hhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC
Confidence 43 26788999999999965 6777777999999993 678888999999999999875
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=9.2e-27 Score=264.40 Aligned_cols=263 Identities=24% Similarity=0.396 Sum_probs=223.2
Q ss_pred eEeecc-cCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc--eeeeeecccccCccccEEEeecCCCCceeccccCCCc
Q 004404 450 QEIQAH-NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (755)
Q Consensus 450 q~l~gH-~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~--~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~ 526 (755)
+.+.+| ...|.++.|+++|++|++++.|+.|++|++...+ ...+ ..+|...+..+.|++++.+++++..+..
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~-----l~~h~~~v~~~~fs~d~~~l~s~s~D~t 226 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRE-----LSGHTRGVSDVAFSPDGSYLLSGSDDKT 226 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcc-----ccccccceeeeEECCCCcEEEEecCCce
Confidence 334444 7899999999999999999999999999996665 2222 2788999999999999999999999988
Q ss_pred eeeecccccccccccccCcccccceeeec-C-CCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEE
Q 004404 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-S-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI 603 (755)
Q Consensus 527 i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s-~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~ 603 (755)
+ .+|+. . ...++++.+|...|++++|+|+ +++++|+.|++|+|||+++++++..
T Consensus 227 i-----------------------riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 227 L-----------------------RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred E-----------------------EEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 8 45555 2 2578899999999999999998 5899999999999999999999999
Q ss_pred ee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc--EE-EeccCCC--CEEEEEEccCCCEEEEEECCCcEEEEE
Q 004404 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VV-DWNDLHE--MVTAACYTPDGQGALVGSYKGSCHLYN 677 (755)
Q Consensus 604 ~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~--~v-~~~~~~~--~VtsvafSPdG~~LasGs~DG~I~lwD 677 (755)
+. |.+.|++++|++ ++++|++++.|+.|+|||+.++. ++ ....+.. +++.++|+|++.+|+++..|+.+++||
T Consensus 284 l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~ 362 (456)
T KOG0266|consen 284 LKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWD 362 (456)
T ss_pred eeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEE
Confidence 97 999999999999 99999999999999999999998 33 3333333 589999999999999999999999999
Q ss_pred CCCCeeeeccccccccccccCCCC---CeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecC-CccEEEEEEEE
Q 004404 678 TSENKLQQKSPINLQNKKKRSHQR---KITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGE-NYVQYMVCIVL 751 (755)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~---~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH-~~~V~sv~fs~ 751 (755)
+..+.....+. +|.. .+.+..+++.+. ++++++.|+.|.+|| .+..++++.+| ...+..+++.+
T Consensus 363 l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~ 432 (456)
T KOG0266|consen 363 LRSGKSVGTYT---------GHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP 432 (456)
T ss_pred ccCCcceeeec---------ccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC
Confidence 99988776543 4554 344445577777 899999999999999 57889999999 77677666544
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=3.3e-27 Score=238.69 Aligned_cols=268 Identities=22% Similarity=0.339 Sum_probs=226.5
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
..+.+|++.|+.++|+|+|.+|||||.|..|.+|++.......-. ..+|...+..+.+..++..+++++.+..+
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~----lkgHsgAVM~l~~~~d~s~i~S~gtDk~v-- 114 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV----LKGHSGAVMELHGMRDGSHILSCGTDKTV-- 114 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceee----eccccceeEeeeeccCCCEEEEecCCceE--
Confidence 346799999999999999999999999999999997544332222 36899999999999999999999888877
Q ss_pred ecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~h 606 (755)
..|+. +++.++.+++|..-|+.+.-+.- .++.+++.|++++|||+++..+++++..
T Consensus 115 ---------------------~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ 173 (338)
T KOG0265|consen 115 ---------------------RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN 173 (338)
T ss_pred ---------------------EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc
Confidence 34443 78899999999999999883222 5688999999999999999999999998
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeee
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~ 685 (755)
.-+++++.|.. .+..+++|+.|+.|++||++.+... .+.+|...|+.+..+|+|.++.+-+.|.++++||++.....+
T Consensus 174 kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 174 KYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ 252 (338)
T ss_pred ceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCC
Confidence 99999999998 8999999999999999999988776 566788999999999999999999999999999998654433
Q ss_pred ccccccccccccCC----CCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 686 KSPINLQNKKKRSH----QRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 686 ~~~i~~~~~~~~~h----~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
... +.+.+| ......++|+|++. ++.+|+.|..+++|| ...++.++.||...|+.+.|-|
T Consensus 253 R~v-----~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 253 RCV-----KIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred ceE-----EEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecccccEEEEcCCcceeEEEeeecC
Confidence 210 111232 34467789999987 899999999999999 4689999999999999999965
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=1.8e-27 Score=266.47 Aligned_cols=252 Identities=23% Similarity=0.358 Sum_probs=206.0
Q ss_pred EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeee
Q 004404 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 451 ~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
++..-...++|..|++|+.+||.|-.|..|++|.+...+ +..+....... .+-+...+..
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~---------------~~d~~sad~~---- 432 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDASDLS---------------NIDTESADVD---- 432 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchhhhc---------------cccccccchh----
Confidence 344455679999999999999999999999999986432 22221000000 0000000000
Q ss_pred cccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCC
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~ 608 (755)
.............++.||+++|..+.|+|+ .+|++++.|++||||.+.+..++..+. |..
T Consensus 433 ------------------~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~ 494 (707)
T KOG0263|consen 433 ------------------VDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA 494 (707)
T ss_pred ------------------hhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCc
Confidence 001112233455669999999999999998 889999999999999999999999886 999
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe-ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecc
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~-~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~ 687 (755)
+|+.+.|+| .|-||||++.|++.++|.....++.+. .+|...|.++.|+|+..|+++|+.|.+||+||+.+|..+..+
T Consensus 495 PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF 573 (707)
T KOG0263|consen 495 PVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF 573 (707)
T ss_pred ceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe
Confidence 999999999 899999999999999999988777754 466789999999999999999999999999999999998765
Q ss_pred ccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
. +|.++|++++|+|+|. +|++|+.|+.|+||| .+.++..+++|++.|+++.|+.
T Consensus 574 ~---------GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 574 T---------GHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR 629 (707)
T ss_pred c---------CCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec
Confidence 3 9999999999999998 899999999999999 5789999999999999999974
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=236.95 Aligned_cols=287 Identities=16% Similarity=0.188 Sum_probs=243.9
Q ss_pred CCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 420 s~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
...++++|..|-+..+|+..++++. -++.+|+++|+++.|+.||.|||||+.+|.|+||+..++.....+.
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~-----~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---- 145 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFA-----GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---- 145 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcce-----eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee----
Confidence 4466899999999999999988842 3467999999999999999999999999999999999998777763
Q ss_pred cCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-
Q 004404 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd- 578 (755)
.....+.-+.|.|.+.+++.+..++.++.+.... +...+.+.||..++++=.|.|+
T Consensus 146 -~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~----------------------~~~~kv~~Gh~~~ct~G~f~pdG 202 (399)
T KOG0296|consen 146 -QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS----------------------QALCKVMSGHNSPCTCGEFIPDG 202 (399)
T ss_pred -cccCceEEEEecccccEEEeecCCCcEEEEECCC----------------------cceeeEecCCCCCcccccccCCC
Confidence 3456677889999999999999999885443332 2566788999999999999999
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC--------
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-------- 648 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~-------- 648 (755)
.+++++..||+|++|+..+++++..+. .....+++.++. .+..++.|+.++.+++-+..+++++.....
T Consensus 203 Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~ 281 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS 281 (399)
T ss_pred ceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence 679999999999999999999999886 455788999998 899999999999999999999988754442
Q ss_pred -CC---CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCc
Q 004404 649 -HE---MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (755)
Q Consensus 649 -~~---~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~ 724 (755)
.. .|-++.++..=++.|+|+.||+|.|||+....+.... .|...|+.+.|-+ .. +|++++.||.
T Consensus 282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c----------~he~~V~~l~w~~-t~-~l~t~c~~g~ 349 (399)
T KOG0296|consen 282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC----------EHEDGVTKLKWLN-TD-YLLTACANGK 349 (399)
T ss_pred chhhhhhhhhcccccccchhhcccccceEEEEecccchhheec----------cCCCceEEEEEcC-cc-hheeeccCce
Confidence 22 3444555556678999999999999999987776643 6889999999999 34 8999999999
Q ss_pred EEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 725 IRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 725 IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
|+.|| ++.++..|.||...|+..++++
T Consensus 350 v~~wDaRtG~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 350 VRQWDARTGQLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred EEeeeccccceEEEEecCchheeEEEEcC
Confidence 99999 7999999999999999988865
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=4.7e-27 Score=241.70 Aligned_cols=240 Identities=21% Similarity=0.381 Sum_probs=215.5
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
.+.+++|.+.|.||++.|.+++|+||+.|++|+|||+.+++....+ .+|...+..+++++--.++.++..+..+.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-----tGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-----TGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-----cchhheeeeeeecccCceEEEecCCCeeE
Confidence 3567899999999999999999999999999999999999988876 78889999999999999999988888773
Q ss_pred eecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~- 605 (755)
.|++ ..+.++.+.||-..|+||+.+|. ..|++|+.|.++||||+++...+.++.
T Consensus 219 -----------------------CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 219 -----------------------CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred -----------------------EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 4444 45678889999999999999998 899999999999999999999999997
Q ss_pred cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
|..+|..|.+.| .+..+++|+.|++|++||++.++.. ..+.|+..|.+++.+|....+|+++.| .|+-|++..+..+
T Consensus 276 H~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~ 353 (460)
T KOG0285|consen 276 HTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFL 353 (460)
T ss_pred CCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchh
Confidence 999999999999 6778999999999999999998766 566677899999999999888888865 6999999999888
Q ss_pred eccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+.+ .+|..-|+.+....|+ ++++|++.|.|.+||
T Consensus 354 ~nl---------sgh~~iintl~~nsD~--v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 354 QNL---------SGHNAIINTLSVNSDG--VLVSGGDNGSIMFWD 387 (460)
T ss_pred hcc---------ccccceeeeeeeccCc--eEEEcCCceEEEEEe
Confidence 753 4899999999999887 899999999999999
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=5.9e-26 Score=251.67 Aligned_cols=354 Identities=18% Similarity=0.265 Sum_probs=273.4
Q ss_pred HHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccc-cCCcccccceeEEeeccccc-------ccc
Q 004404 330 EEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKK-KGSWFKSIRTVASSVTGHKE-------RRS 398 (755)
Q Consensus 330 ~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~-k~~~~~~v~sv~~s~~g~~~-------~~~ 398 (755)
....++.||.+-|.++.++.| +++||.|.++| +|++..-+-.... =.+|...| +++-+..-.. +-.
T Consensus 136 vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~r-l~~v~~~k~~~~~~l~gHkd~V--vacfF~~~~~~l~tvskdG~ 212 (893)
T KOG0291|consen 136 VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSAR-LFGVDGNKNLFTYALNGHKDYV--VACFFGANSLDLYTVSKDGA 212 (893)
T ss_pred eEeeeecCCccceeEEEeccCCceEEeccccceEE-EEEeccccccceEeccCCCcce--EEEEeccCcceEEEEecCce
Confidence 334678999999999999998 89999999999 9988654432221 25777766 2222210000 000
Q ss_pred Ccccc-------------------------CCccCC---------------CceeeeeecC--CCcEEEEeCCCcEEEEe
Q 004404 399 SDERD-------------------------TSSEKG---------------GRRSSSATDD--SQDVSFHGQERVRVRQY 436 (755)
Q Consensus 399 ~~~~~-------------------------~~~~~g---------------~~~~vs~~~d--s~~~l~sg~~dg~Vriw 436 (755)
...|. ...++. ...-++|..+ +..++++|-..|...+|
T Consensus 213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Ly 292 (893)
T KOG0291|consen 213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLY 292 (893)
T ss_pred EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEE
Confidence 00000 000000 0112333333 34568899999999999
Q ss_pred eCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECC-CcEEEEeCcCCceeeeeecccccCccccEEEeecCCCC
Q 004404 437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP 515 (755)
Q Consensus 437 d~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~D-GtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg 515 (755)
.+. ...+++.+.--..+|..++|+..|.+||.|+.. |.+-||++++..-+.+ ..+|...+.+++++|||
T Consensus 293 elP-----~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK-----QQgH~~~i~~l~YSpDg 362 (893)
T KOG0291|consen 293 ELP-----DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK-----QQGHSDRITSLAYSPDG 362 (893)
T ss_pred ecC-----CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-----ccccccceeeEEECCCC
Confidence 765 445556666677899999999999999998765 8999999987766555 47899999999999999
Q ss_pred ceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEE
Q 004404 516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLW 593 (755)
Q Consensus 516 ~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLW 593 (755)
.+++++..++.+ ++|+. ++-++.+|..|+..|+.+.|+.. +.+++++.||+|+.|
T Consensus 363 q~iaTG~eDgKV-----------------------KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 363 QLIATGAEDGKV-----------------------KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred cEEEeccCCCcE-----------------------EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 999999999988 45544 56689999999999999999987 678999999999999
Q ss_pred ECCCCcEEEEeecCC--ceEEEEEeeCCCcEEEEEECCCc-EEEEECCCCcEEEe-ccCCCCEEEEEEccCCCEEEEEEC
Q 004404 594 HLSSKTCLKIFSHSD--YVTCIQFNPVDDRYFISGSLDAK-VRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSY 669 (755)
Q Consensus 594 Dl~t~~~~~~~~h~~--~VtsVafsP~dg~~LaSgS~Dgt-VrIWDl~t~~~v~~-~~~~~~VtsvafSPdG~~LasGs~ 669 (755)
|+...++.++|..+. ...||+..| .|.+++.|+.|.. |.+|++++|+++.. .+|.++|.+++|+|+|..|++|+.
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence 999999999998444 567888888 7999999988864 99999999999954 567789999999999999999999
Q ss_pred CCcEEEEECCCCeee-eccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECC
Q 004404 670 KGSCHLYNTSENKLQ-QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (755)
Q Consensus 670 DG~I~lwDl~~~~~~-~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~ 731 (755)
|.+|++||+-..... .++ .+...|+.++|.|+|+ .|++++-||.|.+||..
T Consensus 499 DkTVRiW~if~s~~~vEtl----------~i~sdvl~vsfrPdG~-elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGTVETL----------EIRSDVLAVSFRPDGK-ELAVATLDGQITFFDIK 550 (893)
T ss_pred cceEEEEEeeccCceeeeE----------eeccceeEEEEcCCCC-eEEEEEecceEEEEEhh
Confidence 999999999765322 221 4567899999999998 89999999999999943
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=7.6e-28 Score=251.35 Aligned_cols=260 Identities=17% Similarity=0.249 Sum_probs=222.6
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
-+-+|..|.|.|+|+.|+||+..|.+.+|+..+... ......|..+|..+.|++++..+++++.++.+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-----EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iK------ 163 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-----ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIK------ 163 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH-----HHHhhhhcccceeEEEccCCCEEEEcCCCceEE------
Confidence 345899999999999999999999999999743221 122467889999999999999999999999984
Q ss_pred cccccccccCcccccceeeecCCCceEEeccCC-CCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceE
Q 004404 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVT 611 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~-~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~Vt 611 (755)
+|...-..++.+++|. ..|++++|+|+ ..|++++.|++|+|||....+....+. |.-.|.
T Consensus 164 -----------------yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 164 -----------------YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred -----------------ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 4444445566666666 89999999996 889999999999999999887777775 999999
Q ss_pred EEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccc
Q 004404 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (755)
Q Consensus 612 sVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~ 690 (755)
+++|+| ...+|++++.|..|++||.+++.++ .+..|+..|..+.|.|++++|++++.|..|++||+++.+.+..+
T Consensus 227 svdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~--- 302 (464)
T KOG0284|consen 227 SVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY--- 302 (464)
T ss_pred eeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh---
Confidence 999999 8889999999999999999999988 56678889999999999999999999999999999976666543
Q ss_pred cccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECC---cceEEeecCCccEEEEEEEEE
Q 004404 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI---DLVHKFKGENYVQYMVCIVLF 752 (755)
Q Consensus 691 ~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~---~ll~~~~GH~~~V~sv~fs~F 752 (755)
++|.+.|+++.|+|-.+.+|.+|+.||.|..|... .+...-.+|...|+++++-|.
T Consensus 303 ------r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 303 ------RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL 361 (464)
T ss_pred ------hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccc
Confidence 49999999999999888899999999999999942 344455689999999988663
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=3.8e-28 Score=248.48 Aligned_cols=276 Identities=19% Similarity=0.320 Sum_probs=223.0
Q ss_pred eeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCcee
Q 004404 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK 491 (755)
Q Consensus 412 ~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~ 491 (755)
..+-|.+.....+++|..|.+|++||.. .+++...|.||+++|.|+.|. .+.|++|+.|.+|+|||+++++.+
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n-----~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKN-----SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccc-----cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 3455666667778999999999999987 444556678999999999985 669999999999999999999988
Q ss_pred eeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEE
Q 004404 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571 (755)
Q Consensus 492 ~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~ 571 (755)
..+ ..|...+..+.++. .++++++.+..+..|...... .....+.+.||...|+
T Consensus 271 ~tl-----ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-------------------~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 271 NTL-----IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-------------------DITLRRVLVGHRAAVN 324 (499)
T ss_pred hHH-----hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch-------------------HHHHHHHHhhhhhhee
Confidence 876 45666676666653 345555566655333322110 1134466889999999
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec-cCC
Q 004404 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLH 649 (755)
Q Consensus 572 ~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~-~~~ 649 (755)
.+.|+ +.++++++.|.+|++|++.++++++++. |...|-|+++ .++++++|+.|.+|++||+..|.+++.. +|.
T Consensus 325 vVdfd-~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 325 VVDFD-DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred eeccc-cceEEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 99997 4699999999999999999999999996 9999999998 6799999999999999999999988654 566
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+-|.++.|. .+.+++|..||+|++||+..+.......-.+....+..|.+.|..++|..- .+++++.|.+|-|||
T Consensus 401 eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f---qIvsssHddtILiWd 475 (499)
T KOG0281|consen 401 ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF---QIISSSHDDTILIWD 475 (499)
T ss_pred Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce---EEEeccCCCeEEEEE
Confidence 789999995 679999999999999999887655443333344456689999999999764 799999999999999
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=253.68 Aligned_cols=264 Identities=23% Similarity=0.439 Sum_probs=224.7
Q ss_pred EEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCC-ceeeeeecccccCc
Q 004404 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES-ERKGELLEKQEDGH 502 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~-~~~~~l~~~~~~~~ 502 (755)
++.++.++.+++|+...... ...+++.+|...|..++|+|++++|++++.|++|+|||+... ..+..+ .+|
T Consensus 174 l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-----~gH 245 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKS---NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-----KGH 245 (456)
T ss_pred EEEccCCCcEEEeecccccc---hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe-----cCC
Confidence 78889999999999854442 233456899999999999999999999999999999999444 555554 699
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEEEEecCC-cE
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QH 580 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L~~spd-~~ 580 (755)
...+.+++|+|++.++++++.++.+ ++|+.. ++++..+.+|.+.|++++|+++ .+
T Consensus 246 ~~~v~~~~f~p~g~~i~Sgs~D~tv-----------------------riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~ 302 (456)
T KOG0266|consen 246 STYVTSVAFSPDGNLLVSGSDDGTV-----------------------RIWDVRTGECVRKLKGHSDGISGLAFSPDGNL 302 (456)
T ss_pred CCceEEEEecCCCCEEEEecCCCcE-----------------------EEEeccCCeEEEeeeccCCceEEEEECCCCCE
Confidence 9999999999999999999999988 566665 5889999999999999999998 78
Q ss_pred EEEEeCCCcEEEEECCCCc--EEEEee-cCC--ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCC---C
Q 004404 581 LLSSSMDKTVRLWHLSSKT--CLKIFS-HSD--YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHE---M 651 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~--~~~~~~-h~~--~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~---~ 651 (755)
|++++.|+.|+|||+.++. +...+. +.. ++++++|+| ++.+|+++..|+++++||+..+.++. +..|.. .
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~ 381 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRC 381 (456)
T ss_pred EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeeecccCCccee
Confidence 9999999999999999999 566664 333 699999999 99999999999999999999887764 444444 3
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCC-CCCeEEEEEccCCCeEEEEEE--CCCcEEEE
Q 004404 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSH-QRKITGFQFAPGSSSEVLVTS--ADSRIRVV 728 (755)
Q Consensus 652 VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h-~~~Vtsl~fsPdg~~~L~sgs--~Dg~IrVW 728 (755)
+.+..+++.++++++|+.|+.|++||+.++..+..+ .+| ...|..+.|+|... ++++++ .|+.|++|
T Consensus 382 ~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l---------~~h~~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 382 IFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL---------EGHSKAAVSDLSSHPTEN-LIASSSFEGDGLIRLW 451 (456)
T ss_pred EecccccCCCCeEEEEeCCceEEEEeCCccchhhhh---------cCCCCCceeccccCCCcC-eeeecCcCCCceEEEe
Confidence 455667889999999999999999999997776654 378 88999999999887 788877 79999999
Q ss_pred E
Q 004404 729 D 729 (755)
Q Consensus 729 D 729 (755)
.
T Consensus 452 ~ 452 (456)
T KOG0266|consen 452 K 452 (456)
T ss_pred c
Confidence 6
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=219.23 Aligned_cols=261 Identities=20% Similarity=0.347 Sum_probs=220.5
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
...|..|+++|.++.|+-||+|.+||+.|.+|++|+...+..+.++ .+|-..+..++.+.|...++++..+..+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-----sghG~EVlD~~~s~Dnskf~s~GgDk~v- 83 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-----SGHGHEVLDAALSSDNSKFASCGGDKAV- 83 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-----cCCCceeeeccccccccccccCCCCceE-
Confidence 3557789999999999999999999999999999999988888776 7888899999999999989888877776
Q ss_pred eecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCC--CcEEEEe
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS--KTCLKIF 604 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t--~~~~~~~ 604 (755)
.+|+. +++.++.|.+|.+.|+.+.|+.+ ..+++|+.|.+|++||.+. .++++++
T Consensus 84 ----------------------~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 84 ----------------------QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred ----------------------EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence 44544 78899999999999999999987 7899999999999999876 4788888
Q ss_pred e-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCee
Q 004404 605 S-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (755)
Q Consensus 605 ~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~ 683 (755)
. ..+.|.+|..+ +..|++|+.||++|.||++.+++.. -....+|++++|+++++.+++++.|+++++.|-.+|++
T Consensus 142 dea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 142 DEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred hhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 6 78899999985 5789999999999999999998653 23456899999999999999999999999999999999
Q ss_pred eeccccccccccccCCCCCeEEE--EEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCcc-EEEEEEEE
Q 004404 684 QQKSPINLQNKKKRSHQRKITGF--QFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYV-QYMVCIVL 751 (755)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl--~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~-V~sv~fs~ 751 (755)
+..+ ++|...=..+ .+.... ..+++|+.||.|.+|| ...++.++.-|... +.++++-|
T Consensus 218 L~sY---------kGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 218 LKSY---------KGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHP 280 (307)
T ss_pred HHHh---------cccccceeeeeeeecccc-eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeeccc
Confidence 8764 4777654443 444433 4899999999999999 46677788777666 66665543
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=1.9e-26 Score=227.57 Aligned_cols=261 Identities=20% Similarity=0.305 Sum_probs=222.5
Q ss_pred EEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCcc
Q 004404 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~ 503 (755)
+++++.|++-.+-+-.+++.. -+|.||+++||+..++.+....|+++.|-+-+|||..++..+..+ .|.
T Consensus 32 lisa~kd~~pmlr~g~tgdwi-----gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf------~hk 100 (334)
T KOG0278|consen 32 LISASKDGKPMLRNGDTGDWI-----GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF------EHK 100 (334)
T ss_pred EEEeccCCCchhccCCCCCcE-----EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh------hhh
Confidence 444455555444444445543 346799999999999999999999999999999999998877665 456
Q ss_pred ccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec--CCCceEEeccCCCCEEEEEecCC-cE
Q 004404 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QH 580 (755)
Q Consensus 504 ~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~--s~k~i~~l~gH~~~V~~L~~spd-~~ 580 (755)
..+..++|+.|...|+++.....+ +++++ ...+..++.+|.+.|..+.|... +.
T Consensus 101 hivk~~af~~ds~~lltgg~ekll-----------------------rvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~ 157 (334)
T KOG0278|consen 101 HIVKAVAFSQDSNYLLTGGQEKLL-----------------------RVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKC 157 (334)
T ss_pred heeeeEEecccchhhhccchHHHh-----------------------hhhhccCCCCCchhhcCCCCcceeEEEeccCce
Confidence 778899999999999998777665 23333 34567789999999999999875 88
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccC
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPd 660 (755)
+++++.|++|||||.+++..++.+..+.+|+++.+++ ++++|.+ ...+.|.+||..+-.+++....+..|.+..++|+
T Consensus 158 iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~ 235 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK 235 (334)
T ss_pred EEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEE-ecCceeEEeccccccceeeccCccccccccccCC
Confidence 9999999999999999999999999999999999999 8876654 5578899999999999999999999999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 661 GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 661 G~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
...+++|+.|..++.||..++..+..+ .++|.++|.++.|+|+|. ..++||.||+||||.
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~--------nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSY--------NKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQ 295 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeec--------ccCCCCceEEEEECCCCc-eeeccCCCceEEEEE
Confidence 999999999999999999999887653 259999999999999998 899999999999998
No 41
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4e-26 Score=238.48 Aligned_cols=270 Identities=16% Similarity=0.261 Sum_probs=222.5
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCc
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
++++++.|.+.-+|....... +...+++.+|..+|..|.||||.+||++|+.|..+++||+.+++....+ ..++
T Consensus 238 yLAsaSkD~Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y----~~~~ 311 (519)
T KOG0293|consen 238 YLASASKDSTAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY----PSGL 311 (519)
T ss_pred eEeeccCCceEEEEEEecCcc--eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc----ccCc
Confidence 356777777777777654332 3344678999999999999999999999999999999999999877665 3445
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCC-CCEEEEEecCC-cE
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL-DDVLDLSWSKS-QH 580 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~-~~V~~L~~spd-~~ 580 (755)
...+.+.+|.||+..+++|+.++.+ ..|++.+..+..+++-. ..|.+++..+| .+
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i-----------------------~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTI-----------------------IMWDLDGNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcE-----------------------EEecCCcchhhcccccccceeEEEEEcCCCcE
Confidence 6777899999999999999988877 34555555554554433 45899999998 67
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCC--CEEEEEE
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHE--MVTAACY 657 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~--~Vtsvaf 657 (755)
+++...|..|++++..+...........+|++++.+. +++++++--.+..|++||+....++. ..+|.. .+..-||
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred EEEEecccceeeechhhhhhhccccccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 8888899999999999888777777888999999999 99999999999999999999877663 444442 4555566
Q ss_pred cc-CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECC
Q 004404 658 TP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (755)
Q Consensus 658 SP-dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~ 731 (755)
.- +..++++|+.|+.|+||+..+++++..+. +|...|++++|+|..+.++++||+||+||||-..
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls---------GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLS---------GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEeec---------CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 54 45899999999999999999999998754 9999999999999999899999999999999754
No 42
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=5.9e-25 Score=241.50 Aligned_cols=449 Identities=14% Similarity=0.154 Sum_probs=304.2
Q ss_pred cccceeeecCCCCCCCCCCCCcccccccCCCCCCCCCcccccccCCcccccCCCccccCCCceecccCCCCcccccccce
Q 004404 214 QNQSVLVRKSPSGNSNNGSSPVASAALSNKPPTGRNCKRMDESRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGC 293 (755)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (755)
-|||||.|-|+++.- --.|.||+||.- +||.|.+-. +.- +-
T Consensus 184 gnrHvk~wyl~~~~K----------ykdpiPl~gRs~-----------~lg~lr~n~-f~a-----------------va 224 (1080)
T KOG1408|consen 184 GNRHVKLWYLQIQSK----------YKDPIPLPGRSY-----------FLGNLRFNE-FLA-----------------VA 224 (1080)
T ss_pred eeeeEEEEEeecccc----------ccCCccccchhh-----------hccccccch-hhh-----------------hh
Confidence 369999999998874 345789999988 888887544 111 11
Q ss_pred eeeccCCCceeEEeccccCCccceeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc-cccCCCCCccccccCCCCCCcc
Q 004404 294 LIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN-VEEGNKDSFDLNNNGSSGGGMK 372 (755)
Q Consensus 294 ~i~~ld~g~~~~~~e~~~dG~~~~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~-~~sgs~D~tv~~~Wd~~~g~~~ 372 (755)
|-+.+=-.+-|-++. .|- |-|...-+.| ....++. +--.+.+..++. ++.|.-+++|| +....+-...
T Consensus 225 Cg~gicAestfait~---qGh---LvEFSsRRLL--DKWVqcR--TTnAnCIcVs~r~I~cgCa~g~vr-lFnp~tL~y~ 293 (1080)
T KOG1408|consen 225 CGVGICAESTFAITA---QGH---LVEFSSRRLL--DKWVQCR--TTNANCICVSSRLIACGCAKGMVR-LFNPETLDYA 293 (1080)
T ss_pred hcCcccccceEEEec---ccc---eeeechhhhh--hhhhhhh--ccccceeeeecceEEEeeccceee-ecCcchhhhc
Confidence 222222223344444 222 4444444444 2222222 222444555555 78899999999 7777665555
Q ss_pred ccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEe
Q 004404 373 SKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI 452 (755)
Q Consensus 373 ~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l 452 (755)
.++...|-.... ++.... ..+..+. ....+-+..++...+.....+..--.|..+++||+.. ....-++..+
T Consensus 294 ~Tlpr~halg~d-~a~~~q--~~~~~s~---~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD--~~kvgk~~s~ 365 (1080)
T KOG1408|consen 294 GTLPRSHALGSD-TANLSQ--PEPKNSE---SSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRD--VNKVGKCSSM 365 (1080)
T ss_pred cccccccccccc-hhhccc--ccccccc---cCcccCCceeEEEecCCCceEEEEEcCceEEEEeccc--cccccceeee
Confidence 555544433221 111100 0000000 0011112233334444566777788999999999974 3344455556
Q ss_pred ecccCCEEEEEEcCC-----------CCEEEEEECCCcEEEEeCcCCceeee----eecc--------------------
Q 004404 453 QAHNGSIWSIKFSLD-----------GRYLASAGEDCVIHVWQVVESERKGE----LLEK-------------------- 497 (755)
Q Consensus 453 ~gH~~~I~sI~fSpd-----------g~~LaTgs~DGtVrVWdl~t~~~~~~----l~~~-------------------- 497 (755)
--|...||.|.--|. ...|+||+.|++||+|++........ ++..
T Consensus 366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence 679999999988762 13599999999999999965321111 0000
Q ss_pred --------cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCC
Q 004404 498 --------QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLD 568 (755)
Q Consensus 498 --------~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~ 568 (755)
...+....+.+++.+|++..|++++..+.+. ++.+. -+....+.+|..
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr-----------------------Vy~Lq~l~~~~~~eAHes 502 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR-----------------------VYDLQELEYTCFMEAHES 502 (1080)
T ss_pred CcccccchhhcCcccceEEEEECCCcceecccCccCceE-----------------------EEEehhhhhhhheecccc
Confidence 0012234567889999999999998888773 44332 244566789999
Q ss_pred CEEEEEecCC----cEEEEEeCCCcEEEEECCCC-cEEEEee-cCCceEEEEEeeCCC--cEEEEEECCCcEEEEECCC-
Q 004404 569 DVLDLSWSKS----QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HSDYVTCIQFNPVDD--RYFISGSLDAKVRIWSIPE- 639 (755)
Q Consensus 569 ~V~~L~~spd----~~LaSgs~DgtVrLWDl~t~-~~~~~~~-h~~~VtsVafsP~dg--~~LaSgS~DgtVrIWDl~t- 639 (755)
+|.||.|+.. .+|++++.|+-|.|||+... .+++++. |...|++|.|-- .+ ..+++++.|..|.+--.+.
T Consensus 503 EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~ 581 (1080)
T KOG1408|consen 503 EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKA 581 (1080)
T ss_pred eeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccc
Confidence 9999999863 67999999999999999754 5667775 999999999987 55 6899999998875433221
Q ss_pred --CcEEE---eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCe
Q 004404 640 --RQVVD---WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (755)
Q Consensus 640 --~~~v~---~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~ 714 (755)
+.+.. ..-.+..++.|+..|..+++++++.|..|+||++++++....+. .-.+|.+....+...|.|-
T Consensus 582 ~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK------gs~~~eG~lIKv~lDPSgi- 654 (1080)
T KOG1408|consen 582 SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK------GSRDHEGDLIKVILDPSGI- 654 (1080)
T ss_pred cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec------ccccCCCceEEEEECCCcc-
Confidence 22211 11123578999999999999999999999999999999887653 2347888999999999997
Q ss_pred EEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 715 EVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 715 ~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+|++.+.|.++.++| .+++++...||.+.|.++-|.+
T Consensus 655 Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 655 YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred EEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence 899999999999999 7999999999999999998864
No 43
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=2.3e-26 Score=245.05 Aligned_cols=281 Identities=19% Similarity=0.287 Sum_probs=230.2
Q ss_pred cCCCceeeeeecCCC---cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 004404 407 EKGGRRSSSATDDSQ---DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483 (755)
Q Consensus 407 ~~g~~~~vs~~~ds~---~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVW 483 (755)
..||...+++....+ .++++++.|++|++|++-. ...+++++.+|..+|..++|+++|..|+|+|.|+.|++|
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~----~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD----DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEec----CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 345555555554443 5689999999999999864 233567788999999999999999999999999999999
Q ss_pred eCcCCceeeeeecccccCccccEEEeecCCCC-ceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEE
Q 004404 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS 562 (755)
Q Consensus 484 dl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg-~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~ 562 (755)
|++++++...+.. .....++.+.|+. .+++++..++.|..+ ..-+++.+++
T Consensus 286 DtETG~~~~~f~~------~~~~~cvkf~pd~~n~fl~G~sd~ki~~w----------------------DiRs~kvvqe 337 (503)
T KOG0282|consen 286 DTETGQVLSRFHL------DKVPTCVKFHPDNQNIFLVGGSDKKIRQW----------------------DIRSGKVVQE 337 (503)
T ss_pred ccccceEEEEEec------CCCceeeecCCCCCcEEEEecCCCcEEEE----------------------eccchHHHHH
Confidence 9999998887632 2456688888887 777777777766322 2225677888
Q ss_pred eccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC
Q 004404 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (755)
Q Consensus 563 l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t 639 (755)
+..|.+.|..+.|-++ .++++++.|++|+||+.+....++... +.-...||..+| ++.+|++=+.|..|.||.+..
T Consensus 338 Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhccCceEEEEeccc
Confidence 9999999999999998 789999999999999999988777664 445677899999 999999999999999999754
Q ss_pred CcEE----EeccC--CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCC
Q 004404 640 RQVV----DWNDL--HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (755)
Q Consensus 640 ~~~v----~~~~~--~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~ 713 (755)
.-.. .+.+| .+.-..+.|||||.+|++|+.||.+.+||..+.+++.. ++.|.++++.+.|+|...
T Consensus 417 ~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~---------lkah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 417 PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK---------LKAHDQPCIGVDWHPVEP 487 (503)
T ss_pred ccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc---------cccCCcceEEEEecCCCc
Confidence 3211 22223 25678899999999999999999999999999888765 458999999999999988
Q ss_pred eEEEEEECCCcEEEEE
Q 004404 714 SEVLVTSADSRIRVVD 729 (755)
Q Consensus 714 ~~L~sgs~Dg~IrVWD 729 (755)
..+++++.||.|++||
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 8999999999999996
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.1e-24 Score=263.90 Aligned_cols=294 Identities=15% Similarity=0.188 Sum_probs=221.4
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeee--cccccCccccEE
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL--EKQEDGHLNMLL 507 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~--~~~~~~~~~~v~ 507 (755)
+|.+++|+..............+.+|.+.|.+++|+|+|++||||+.|++|+||++.......... ......+...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 566778877755554444445677899999999999999999999999999999975421110000 000011234566
Q ss_pred EeecCCC-CceeccccCCCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEEEEecC-C-cEEEE
Q 004404 508 LANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSK-S-QHLLS 583 (755)
Q Consensus 508 ~v~~s~d-g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L~~sp-d-~~LaS 583 (755)
.+.|.+. +..++++..++.+ .+|++. ++.+..+.+|.+.|++++|+| + .+|++
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v-----------------------~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVV-----------------------QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeE-----------------------EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEE
Confidence 6777664 6778887777777 455543 466778899999999999997 4 68999
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc--EEEeccCCCCEEEEEEccCC
Q 004404 584 SSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VVDWNDLHEMVTAACYTPDG 661 (755)
Q Consensus 584 gs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~--~v~~~~~~~~VtsvafSPdG 661 (755)
|+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.|++|++||+++.. ...+..|...|.++.|. ++
T Consensus 594 gs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~ 672 (793)
T PLN00181 594 GSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS 672 (793)
T ss_pred EcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC
Confidence 9999999999999999998888778899999976478999999999999999998765 23556778899999997 68
Q ss_pred CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEe--
Q 004404 662 QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKF-- 737 (755)
Q Consensus 662 ~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~-- 737 (755)
.+|++++.|+.|+|||+..+...... .....+.+|...+..+.|+|++. +|++|+.|++|+||+. ...+..+
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~---~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINE---TPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCC---cceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEec
Confidence 89999999999999999754211000 00123458999999999999987 8999999999999993 2222222
Q ss_pred -----------ecCCccEEEEEEEE
Q 004404 738 -----------KGENYVQYMVCIVL 751 (755)
Q Consensus 738 -----------~GH~~~V~sv~fs~ 751 (755)
..|...|.+++|.+
T Consensus 749 ~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred ccCCcccccccCCCCcEEEEEEEcC
Confidence 23445688888754
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1e-25 Score=245.21 Aligned_cols=258 Identities=19% Similarity=0.294 Sum_probs=216.2
Q ss_pred eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeec
Q 004404 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (755)
Q Consensus 452 l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~ 531 (755)
+..|...|.+|.|+|...+++++=..|.|.||+.++...+..+. ....++....+-.-...+++++.+..+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe-----V~~~PvRa~kfiaRknWiv~GsDD~~I---- 79 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE-----VSEVPVRAAKFIARKNWIVTGSDDMQI---- 79 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee-----ecccchhhheeeeccceEEEecCCceE----
Confidence 45699999999999999999999999999999999988777662 233455556666667778888887776
Q ss_pred ccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCC-cEEEEee-cC
Q 004404 532 RGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HS 607 (755)
Q Consensus 532 ~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~-~~~~~~~-h~ 607 (755)
.++.. +.+.++.|.+|.+-|.+|+.+|. .+++++|.|-+|++||.... .|.++|. |.
T Consensus 80 -------------------rVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 80 -------------------RVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred -------------------EEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 34433 56788999999999999999998 89999999999999999865 7888886 99
Q ss_pred CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCC--CEEEEEECCCcEEEEECCCCeee
Q 004404 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDG--QGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 608 ~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG--~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
.+|.+|+|+|.|.+.|++++.|++|+||.+-...+. .+.+|...|+++.|-+.| .+|++|+.|.+|+|||.++..++
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence 999999999999999999999999999999887665 556778899999998855 79999999999999999998888
Q ss_pred eccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEeecCCccEEEE
Q 004404 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGENYVQYMV 747 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~~GH~~~V~sv 747 (755)
+++ .+|...|..+.|+|.-+ .+++|+.||+||||+. .++...+.-.-+.++++
T Consensus 221 ~TL---------eGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I 275 (794)
T KOG0276|consen 221 QTL---------EGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCI 275 (794)
T ss_pred HHh---------hcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhhhhhcCCceEEEE
Confidence 764 49999999999999987 8999999999999993 34443333333334443
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=7.2e-25 Score=221.84 Aligned_cols=263 Identities=18% Similarity=0.357 Sum_probs=215.8
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..+++|..|..|.+|+... +..... .+++|.++|..+.|.+|+..|+++|.|.+|+.||+++++....+ .+
T Consensus 60 s~~aSgG~Dr~I~LWnv~g-dceN~~---~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~-----k~ 130 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYG-DCENFW---VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH-----KG 130 (338)
T ss_pred CeEeecCCcceEEEEeccc-ccccee---eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehh-----cc
Confidence 4578999999999999653 333332 36799999999999999999999999999999999999988875 66
Q ss_pred ccccEEEeecCCC-CceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-c
Q 004404 502 HLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (755)
Q Consensus 502 ~~~~v~~v~~s~d-g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~ 579 (755)
|...+..+..+.- ..++.+++.++.+ ++|++..+..........+++++.|... .
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~-----------------------kl~D~R~k~~~~t~~~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTL-----------------------KLWDIRKKEAIKTFENKYQLTAVGFKDTSD 187 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceE-----------------------EEEeecccchhhccccceeEEEEEeccccc
Confidence 7777776664443 3455566667766 5566544433333334567999999876 7
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC----CcEEEeccC-----C
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE----RQVVDWNDL-----H 649 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t----~~~v~~~~~-----~ 649 (755)
.+++|+-|+.|++||++....+.++. |.++|+.|..+| ++.++++-+.|.++++||++- .+++..+.. .
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe 266 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE 266 (338)
T ss_pred ceeeccccCceeeeccccCcceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence 89999999999999999999999996 999999999999 999999999999999999875 333433322 2
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEE
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrV 727 (755)
.....++|+|+++++.+|+.|..+++||......+..++ +|.+.|+.++|+|..+ +|++++.|.+|.+
T Consensus 267 knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp---------Gh~gsvn~~~Fhp~e~-iils~~sdk~i~l 334 (338)
T KOG0265|consen 267 KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP---------GHYGSVNEVDFHPTEP-IILSCSSDKTIYL 334 (338)
T ss_pred hhcceeeccCCCCccccccccceEEEeecccccEEEEcC---------CcceeEEEeeecCCCc-EEEEeccCceeEe
Confidence 356788999999999999999999999999988877644 9999999999999988 8999999999986
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=4.1e-25 Score=228.55 Aligned_cols=323 Identities=15% Similarity=0.137 Sum_probs=264.8
Q ss_pred HHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCC
Q 004404 333 EMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (755)
Q Consensus 333 ~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g 409 (755)
..|.+|++.|-.++..|+ +++|+.|..-- +|+..+|.....+. +|..+|..+.|+.+|
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~Af-lW~~~~ge~~~elt-gHKDSVt~~~Fshdg----------------- 118 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAF-LWDISTGEFAGELT-GHKDSVTCCSFSHDG----------------- 118 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEE-EEEccCCcceeEec-CCCCceEEEEEccCc-----------------
Confidence 578999999999999988 88999888877 99999998655555 777777666666543
Q ss_pred CceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc
Q 004404 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (755)
Q Consensus 410 ~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~ 489 (755)
.++++|.-+|+|++|...++...... ..--+.|-=|.|+|-+..|+.|+.||.|-+|.+.+..
T Consensus 119 ------------tlLATGdmsG~v~v~~~stg~~~~~~-----~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 119 ------------TLLATGDMSGKVLVFKVSTGGEQWKL-----DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred ------------eEEEecCCCccEEEEEcccCceEEEe-----ecccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence 45789999999999999877654322 2345678889999999999999999999999998764
Q ss_pred eeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccC-C
Q 004404 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGH-L 567 (755)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH-~ 567 (755)
..+. ..+|...+.+-.+.|+|+.+.++..++.+. +|.. ++++++.+.+- .
T Consensus 182 ~~kv-----~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~-----------------------~Wn~ktg~p~~~~~~~e~ 233 (399)
T KOG0296|consen 182 LCKV-----MSGHNSPCTCGEFIPDGKRILTGYDDGTII-----------------------VWNPKTGQPLHKITQAEG 233 (399)
T ss_pred eeeE-----ecCCCCCcccccccCCCceEEEEecCceEE-----------------------EEecCCCceeEEeccccc
Confidence 4333 367899999999999999999999988884 3333 45666665532 3
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee---------cCCceEEEEEeeC--CCcEEEEEECCCcEEEE
Q 004404 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---------HSDYVTCIQFNPV--DDRYFISGSLDAKVRIW 635 (755)
Q Consensus 568 ~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~---------h~~~VtsVafsP~--dg~~LaSgS~DgtVrIW 635 (755)
....++.++.. ..++.|..++.+++-...+++.+..+. +...+.||.+.|. .-.++|+|+.||+|.||
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence 45667777766 567888899999999888887766553 4455666666552 45689999999999999
Q ss_pred ECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeE
Q 004404 636 SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (755)
Q Consensus 636 Dl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~ 715 (755)
|+...++.....|...|+.+.|-+ ..+|++++.+|.|++||.++|++...+. +|...|..++++|+.+ +
T Consensus 314 D~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~---------GH~~~Il~f~ls~~~~-~ 382 (399)
T KOG0296|consen 314 DLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT---------GHQMGILDFALSPQKR-L 382 (399)
T ss_pred ecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe---------cCchheeEEEEcCCCc-E
Confidence 999999999999999999999999 7899999999999999999999998754 9999999999999988 8
Q ss_pred EEEEECCCcEEEEEC
Q 004404 716 VLVTSADSRIRVVDG 730 (755)
Q Consensus 716 L~sgs~Dg~IrVWD~ 730 (755)
++++|.|++.+||+.
T Consensus 383 vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 383 VVTVSDDNTALVFEV 397 (399)
T ss_pred EEEecCCCeEEEEec
Confidence 999999999999974
No 48
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=7.9e-24 Score=240.72 Aligned_cols=230 Identities=19% Similarity=0.245 Sum_probs=178.1
Q ss_pred EeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 451 EIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 451 ~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
.+.+|.+.|++++|+| ++++||||+.|++|+|||+.+......
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~------------------------------------ 113 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN------------------------------------ 113 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc------------------------------------
Confidence 4679999999999999 889999999999999999854321000
Q ss_pred ecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEee-c
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~-h 606 (755)
...++..+.+|...|.+++|+|+ ++|++++.|++|+|||+.+++.+..+. |
T Consensus 114 --------------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 114 --------------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred --------------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 11345678899999999999996 589999999999999999999888886 9
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec-cCCC-CEEEEEEccCCCEEEEEE----CCCcEEEEECCC
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHE-MVTAACYTPDGQGALVGS----YKGSCHLYNTSE 680 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~-~~~~-~VtsvafSPdG~~LasGs----~DG~I~lwDl~~ 680 (755)
...|.+++|+| ++.+|++++.|++|+|||+++++.+... .|.. .+..+.|.+++..|++++ .|+.|++||+++
T Consensus 168 ~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 168 SDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 99999999999 9999999999999999999998877443 4443 345788999887777654 478999999987
Q ss_pred CeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE-CCCcEEEEE--CCcceEEeec-CCccEEEEEEEE
Q 004404 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVD--GIDLVHKFKG-ENYVQYMVCIVL 751 (755)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs-~Dg~IrVWD--~~~ll~~~~G-H~~~V~sv~fs~ 751 (755)
........ ...+...+....|++++. +|++++ .|+.|++|| .++++..+.. +...+.+++|.|
T Consensus 247 ~~~p~~~~-------~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 247 MASPYSTV-------DLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred CCCceeEe-------ccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 54322110 012334566677899987 677766 699999999 3555554443 444577777765
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=7.9e-24 Score=256.59 Aligned_cols=276 Identities=15% Similarity=0.225 Sum_probs=212.1
Q ss_pred CcEEEEeCCCcEEEEeeCCCCccc---ceeeeeEeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeec
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLT---ALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~---~~~~~q~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
..++++|+.|++|++|+....... ..+....+. +...|.+++|++ ++.+||+++.||+|+|||+.+++....+
T Consensus 495 g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-- 571 (793)
T PLN00181 495 GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-- 571 (793)
T ss_pred CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe--
Confidence 356889999999999997532111 111222333 456899999987 4789999999999999999888766654
Q ss_pred ccccCccccEEEeecCC-CCceeccccCCCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEEEE
Q 004404 497 KQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLS 574 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~-dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L~ 574 (755)
.+|...+..+.+++ ++.++++++.++.+. +|++. +..+..+..| ..|.++.
T Consensus 572 ---~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~-----------------------iWd~~~~~~~~~~~~~-~~v~~v~ 624 (793)
T PLN00181 572 ---KEHEKRVWSIDYSSADPTLLASGSDDGSVK-----------------------LWSINQGVSIGTIKTK-ANICCVQ 624 (793)
T ss_pred ---cCCCCCEEEEEEcCCCCCEEEEEcCCCEEE-----------------------EEECCCCcEEEEEecC-CCeEEEE
Confidence 56788899999996 788999998888874 44442 3445556544 5799999
Q ss_pred ecC-C-cEEEEEeCCCcEEEEECCCCc-EEEEe-ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC------cEE-
Q 004404 575 WSK-S-QHLLSSSMDKTVRLWHLSSKT-CLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER------QVV- 643 (755)
Q Consensus 575 ~sp-d-~~LaSgs~DgtVrLWDl~t~~-~~~~~-~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~------~~v- 643 (755)
|++ + .+|++|+.|++|++||++... .+..+ .|...|.++.|. ++.+|++++.|++|+|||+... .++
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~ 702 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLH 702 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence 965 3 689999999999999998765 44455 499999999996 5789999999999999999743 233
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccc----cccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN----LQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 644 ~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~----~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
.+..|...+..++|+|++++|++|+.|+.|++|+.........+.+. ........|...|.+++|+|++. .|++|
T Consensus 703 ~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~-~lva~ 781 (793)
T PLN00181 703 SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS-TLVAA 781 (793)
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC-eEEEe
Confidence 55567788999999999999999999999999998766443222111 00111234667899999999998 89999
Q ss_pred ECCCcEEEEE
Q 004404 720 SADSRIRVVD 729 (755)
Q Consensus 720 s~Dg~IrVWD 729 (755)
+.||.|+||+
T Consensus 782 ~~dG~I~i~~ 791 (793)
T PLN00181 782 NSTGNIKILE 791 (793)
T ss_pred cCCCcEEEEe
Confidence 9999999998
No 50
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=5.1e-24 Score=243.79 Aligned_cols=250 Identities=14% Similarity=0.190 Sum_probs=185.7
Q ss_pred eCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC-CCEEEEEECCCcEEEEeCcCCceeeeeecccccCcccc
Q 004404 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM 505 (755)
Q Consensus 427 g~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd-g~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~ 505 (755)
|...+.|++|+.... ..+..+.+|.++|++|+|+|+ +.+||||+.|++|+||++.+.......
T Consensus 50 GG~~gvI~L~~~~r~-----~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~----------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-----PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE----------- 113 (568)
T ss_pred CCceeEEEeeecCCC-----ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-----------
Confidence 566788999987643 234567899999999999996 789999999999999998643210000
Q ss_pred EEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-c-EEEE
Q 004404 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q-HLLS 583 (755)
Q Consensus 506 v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~-~LaS 583 (755)
...++..+.+|...|.+++|+|+ . .|++
T Consensus 114 --------------------------------------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 114 --------------------------------------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred --------------------------------------------------cccceEEeecCCCcEEEEEECCCCCeEEEE
Confidence 01234457789999999999997 3 4679
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe-ccCCCCEE-----EEEE
Q 004404 584 SSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVT-----AACY 657 (755)
Q Consensus 584 gs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~-~~~~~~Vt-----svaf 657 (755)
++.|++|+|||+.+++.+..+.|...|.+++|+| ++.+|++++.|++|+|||+++++.+.. ..|.+.+. ...|
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence 9999999999999998888888888999999999 999999999999999999999987754 44554432 2345
Q ss_pred ccCCCEEEEEECCC----cEEEEECCC-CeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC-C
Q 004404 658 TPDGQGALVGSYKG----SCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG-I 731 (755)
Q Consensus 658 SPdG~~LasGs~DG----~I~lwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~-~ 731 (755)
++++.+|++++.++ .|+|||++. ...+.... ...+.+.+......+++. ++++|+.|++||+|+. .
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-------ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-------IDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-------ecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccC
Confidence 68999999987764 799999995 33333221 223444444444445565 7889999999999993 2
Q ss_pred cceEEeec--CCccEEEEEEEE
Q 004404 732 DLVHKFKG--ENYVQYMVCIVL 751 (755)
Q Consensus 732 ~ll~~~~G--H~~~V~sv~fs~ 751 (755)
..+..+.. +..++.+++|.|
T Consensus 295 ~~~~~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 295 GSIRKVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred CcEEeecccccCCCccceEEcc
Confidence 22333222 455677888765
No 51
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=3.6e-24 Score=237.46 Aligned_cols=390 Identities=16% Similarity=0.274 Sum_probs=250.2
Q ss_pred CCCceeEEeccccCCccceeeeecCC---ceecHHHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCcc
Q 004404 299 DNGKEFVVNEIQEDGTWKKVKEVGTG---RQLTIEEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMK 372 (755)
Q Consensus 299 d~g~~~~~~e~~~dG~~~~l~d~~tg---~~lt~~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~ 372 (755)
..|+.+.+..... -.+|+..|| +.|+. .+-...|+.+.-.++ +|.|-.|+.|+ +|+..++...
T Consensus 32 ~~Gr~va~~a~E~----vn~WdlRtge~~~~l~~------~~~k~evt~l~~~~d~l~lAVGYaDGsVq-if~~~s~~~~ 100 (888)
T KOG0306|consen 32 GKGRAVAVSALEQ----VNIWDLRTGEIEKKLIL------LKKKAEVTCLRSSDDILLLAVGYADGSVQ-IFSLESEEIL 100 (888)
T ss_pred CCCcEEEEecccc----EeEEeeecchhhhhhhh------hcccceEEEeeccCCcceEEEEecCceEE-eeccCCCcee
Confidence 3488888844322 137999999 44422 122234666666666 68899999999 9998876544
Q ss_pred ccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEe
Q 004404 373 SKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI 452 (755)
Q Consensus 373 ~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l 452 (755)
-++. ||.+.|..+.+...| ..+++|+.|+.|-+||+-... .++ .+
T Consensus 101 ~tfn-gHK~AVt~l~fd~~G-----------------------------~rlaSGskDt~IIvwDlV~E~--Gl~---rL 145 (888)
T KOG0306|consen 101 ITFN-GHKAAVTTLKFDKIG-----------------------------TRLASGSKDTDIIVWDLVGEE--GLF---RL 145 (888)
T ss_pred eeec-ccccceEEEEEcccC-----------------------------ceEeecCCCccEEEEEeccce--eeE---Ee
Confidence 4443 555555544443322 347899999999999987333 333 47
Q ss_pred ecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCC-------------------
Q 004404 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP------------------- 513 (755)
Q Consensus 453 ~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~------------------- 513 (755)
.||++.|+.+-|..+.++|++.+.|+.|++||+.+..+.... ..|.+.++.+...+
T Consensus 146 ~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Th-----vd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~ 220 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETH-----VDHRGEIWALVLDEKLLVTAGTDSELKVWELAF 220 (888)
T ss_pred ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEE-----ecccceEEEEEEecceEEEEecCCceEEEEeec
Confidence 899999999999988899999999999999999888766553 23333333333332
Q ss_pred ----------------------------------CCceeccccCCCceeeecc----------cc---ccccccc-----
Q 004404 514 ----------------------------------EPTSLSPKHLDNHLEKKRR----------GR---SINRKSL----- 541 (755)
Q Consensus 514 ----------------------------------dg~~l~~~s~d~~i~~~~~----------~~---~~~~~s~----- 541 (755)
+..+++.-..+..+..... .+ .....+.
T Consensus 221 ~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 221 EDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 1111111111111000000 00 0000000
Q ss_pred -ccCccc--------------------------ccc----------eeeecC--CCc--------eEEeccCCCCEEEEE
Q 004404 542 -SLDHMV--------------------------VPE----------TVFALS--DKP--------ICSFQGHLDDVLDLS 574 (755)
Q Consensus 542 -s~d~~~--------------------------~~~----------~v~~~s--~k~--------i~~l~gH~~~V~~L~ 574 (755)
+..... ... .++.+. .+. ..++.||..+|..++
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence 000000 000 011111 111 145779999999999
Q ss_pred ecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe-ccCCCCEE
Q 004404 575 WSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVT 653 (755)
Q Consensus 575 ~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~-~~~~~~Vt 653 (755)
++.+..++..+..+.|++|+..+.+|++++.-. ++.+..|-| .+++++.|...|.+.+||+....++.. ..|.+.|+
T Consensus 381 vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW 458 (888)
T KOG0306|consen 381 VSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIW 458 (888)
T ss_pred eecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhcccccee
Confidence 999988777778899999999999999998633 666666766 556666666666666666555544422 23444555
Q ss_pred EEEEccCCCEEEEEECCCcEEEEEC------------------------------------------------------C
Q 004404 654 AACYTPDGQGALVGSYKGSCHLYNT------------------------------------------------------S 679 (755)
Q Consensus 654 svafSPdG~~LasGs~DG~I~lwDl------------------------------------------------------~ 679 (755)
+++.+||++.+++|+.|.+|++||. .
T Consensus 459 si~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 459 SISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred eeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence 5555555555555555555555554 3
Q ss_pred CCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+.+... .+.+|.-+|.++..+|+++ ++++||.|.+|+||- -|+|-..|.+|...|+++.|.|
T Consensus 539 tlKFfl---------sLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 539 TLKFFL---------SLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP 602 (888)
T ss_pred ceeeee---------eecccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence 333322 2469999999999999998 899999999999996 6899999999999999999976
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=1.2e-24 Score=225.83 Aligned_cols=258 Identities=17% Similarity=0.266 Sum_probs=212.3
Q ss_pred eeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCC---CEEEEEECCCcEEEEeCcCCce
Q 004404 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG---RYLASAGEDCVIHVWQVVESER 490 (755)
Q Consensus 414 vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg---~~LaTgs~DGtVrVWdl~t~~~ 490 (755)
+++..-....+++|++||.+++|+...+. ...+.||.++|.+++|.--. ..|+++|.|.++++|.++.++.
T Consensus 108 VSsv~~~~~~IltgsYDg~~riWd~~Gk~------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 108 VSSVKGASKWILTGSYDGTSRIWDLKGKS------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred hhhhcccCceEEEeecCCeeEEEecCCce------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 44445556778999999999999987443 34577999999988885432 3699999999999999865543
Q ss_pred eeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCE
Q 004404 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570 (755)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V 570 (755)
..+ .+..-.||...|
T Consensus 182 ~~~-----------------------------------------------------------------~~~~~~GHk~~V 196 (423)
T KOG0313|consen 182 KVK-----------------------------------------------------------------ALKVCRGHKRSV 196 (423)
T ss_pred hhh-----------------------------------------------------------------HHhHhcccccce
Confidence 221 112223899999
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEECC-------------------------CCcEEEEee-cCCceEEEEEeeCCCcEE
Q 004404 571 LDLSWSKS-QHLLSSSMDKTVRLWHLS-------------------------SKTCLKIFS-HSDYVTCIQFNPVDDRYF 623 (755)
Q Consensus 571 ~~L~~spd-~~LaSgs~DgtVrLWDl~-------------------------t~~~~~~~~-h~~~VtsVafsP~dg~~L 623 (755)
-++...++ .++++|+.|.+|+||+.. ++.++.++. |..+|.+|.|.+ ...+
T Consensus 197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~ 274 (423)
T KOG0313|consen 197 DSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVI 274 (423)
T ss_pred eEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCce
Confidence 99999887 789999999999999932 123445554 999999999986 6889
Q ss_pred EEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCe
Q 004404 624 ISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (755)
Q Consensus 624 aSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (755)
++++.|.+|+.||+.++..+........++++.++|..++|++|+.|..|++||.+++.-... ...+.+|.+.|
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v------~~s~~gH~nwV 348 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV------SQSLIGHKNWV 348 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCcee------EEeeecchhhh
Confidence 999999999999999999998888899999999999999999999999999999998742211 13356999999
Q ss_pred EEEEEccCCCeEEEEEECCCcEEEEE---CCcceEEeecCCccEEEEEEE
Q 004404 704 TGFQFAPGSSSEVLVTSADSRIRVVD---GIDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 704 tsl~fsPdg~~~L~sgs~Dg~IrVWD---~~~ll~~~~GH~~~V~sv~fs 750 (755)
.++.|+|....+|++++.|+++++|| +...+..+.+|...|.++.+.
T Consensus 349 ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 349 SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence 99999999998999999999999999 355889999999999998763
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.9e-25 Score=228.08 Aligned_cols=271 Identities=24% Similarity=0.330 Sum_probs=220.5
Q ss_pred ceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCC
Q 004404 445 ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (755)
Q Consensus 445 ~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d 524 (755)
+.+..|.|+.|++.||-+.||++|+||||++.|.+..||.+...... ++ .....+|..++..+.|+||.++++++..+
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~-kl-~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF-KL-KKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce-ee-eeeeecccCceEEEEECCCCCeEEecCch
Confidence 33445678899999999999999999999999999999998765541 11 12247899999999999999999988776
Q ss_pred CceeeecccccccccccccCcccccceeeec-CCCceEEec-cCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEE
Q 004404 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQ-GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL 601 (755)
Q Consensus 525 ~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~-gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~ 601 (755)
..+ .+|+. ++...+.+. +|...+.+++|.|| ..+++|+.|++|..||+.... +
T Consensus 291 e~~-----------------------~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~ 346 (519)
T KOG0293|consen 291 EVL-----------------------SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-L 346 (519)
T ss_pred Hhe-----------------------eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-h
Confidence 654 23333 333333332 34578999999999 569999999999999987543 3
Q ss_pred EEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 602 KIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 602 ~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
.... ..-.|.+++..+ ||+++++...|..|++++..+.........+.+|++.++|.+|+++++.-.+..+++||++
T Consensus 347 ~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 347 GNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred hcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 3332 345699999999 9999999999999999999988777778888999999999999999999999999999999
Q ss_pred CCeeeeccccccccccccCCCC--CeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 680 ENKLQQKSPINLQNKKKRSHQR--KITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~--~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
..+++..+ .+|.. .|..-+|--....++++||.|++|+||+ .++++..+.||...|+.|++.|
T Consensus 426 e~~lv~kY---------~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 426 ENKLVRKY---------FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred hhhHHHHh---------hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence 87776654 36654 4556667665555999999999999999 7999999999999999999876
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.7e-24 Score=234.16 Aligned_cols=265 Identities=17% Similarity=0.280 Sum_probs=228.0
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCc
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
.++.+...|.|.||+..+..+ ++.++-..-+|.+.+|-+--+++++|+.|..|+|++..+.+++..+ ..|
T Consensus 27 w~la~LynG~V~IWnyetqtm-----VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-----eAH 96 (794)
T KOG0276|consen 27 WILAALYNGDVQIWNYETQTM-----VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-----EAH 96 (794)
T ss_pred eEEEeeecCeeEEEeccccee-----eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-----ecc
Confidence 467788999999999985544 4455667789999999999999999999999999999999999887 778
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cE
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QH 580 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~ 580 (755)
...+.+++..|...++.+++.+-.+..|. |.....+.++|.||+.-|.+++|+|. +.
T Consensus 97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~---------------------we~~wa~~qtfeGH~HyVMqv~fnPkD~nt 155 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWD---------------------WENEWACEQTFEGHEHYVMQVAFNPKDPNT 155 (794)
T ss_pred ccceeeeeecCCCCeEEecCCccEEEEee---------------------ccCceeeeeEEcCcceEEEEEEecCCCccc
Confidence 89999999999999999998888774332 22344678899999999999999996 88
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeC-CCcEEEEEECCCcEEEEECCCCcEEEec-cCCCCEEEEEE
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACY 657 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~-dg~~LaSgS~DgtVrIWDl~t~~~v~~~-~~~~~Vtsvaf 657 (755)
|++++-|+||++|.+....+..++. |...|+||.|-+. |..+|++|+.|.+|+|||.++..++++. +|...|..++|
T Consensus 156 FaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~f 235 (794)
T KOG0276|consen 156 FASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFF 235 (794)
T ss_pred eeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEe
Confidence 9999999999999999999999997 9999999999882 2359999999999999999999998655 57789999999
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEE
Q 004404 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 658 SPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVW 728 (755)
+|.=..+++|+.||+++||+..+-++...+. ....+|.+++-.+.+. .+++|.+.|.|.|=
T Consensus 236 hp~lpiiisgsEDGTvriWhs~Ty~lE~tLn---------~gleRvW~I~~~k~~~-~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 236 HPELPIIISGSEDGTVRIWNSKTYKLEKTLN---------YGLERVWCIAAHKGDG-KIAVGFDEGSVTVK 296 (794)
T ss_pred cCCCcEEEEecCCccEEEecCcceehhhhhh---------cCCceEEEEeecCCCC-eEEEeccCCcEEEE
Confidence 9999999999999999999999888776543 4557899999988776 68888887776653
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2e-24 Score=242.36 Aligned_cols=258 Identities=24% Similarity=0.417 Sum_probs=220.5
Q ss_pred eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeec
Q 004404 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (755)
Q Consensus 452 l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~ 531 (755)
++.....|..++|+|.-.+++++--.|.|.+||...+..+.++ ..|..++..+.|.|.+.+++++..+..|
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-----deHdGpVRgv~FH~~qplFVSGGDDykI---- 75 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-----DEHDGPVRGVDFHPTQPLFVSGGDDYKI---- 75 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-----hccCCccceeeecCCCCeEEecCCccEE----
Confidence 4455678999999999999999999999999999888777775 7889999999999999999999998888
Q ss_pred ccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCC
Q 004404 532 RGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608 (755)
Q Consensus 532 ~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~ 608 (755)
.+|.. +.+++.++.||-+-|..+.|++. -.++++|.|.||+||+..+.+|+.++. |+.
T Consensus 76 -------------------kVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH 136 (1202)
T KOG0292|consen 76 -------------------KVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH 136 (1202)
T ss_pred -------------------EEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence 56665 44688899999999999999998 899999999999999999999999996 999
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc----------------------------EE--EeccCCCCEEEEEEc
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ----------------------------VV--DWNDLHEMVTAACYT 658 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~----------------------------~v--~~~~~~~~VtsvafS 658 (755)
+|.|.+|+| ..++++++|.|.+|||||+..-+ ++ .+.+|...|+-++|+
T Consensus 137 YVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 137 YVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred EEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 999999999 89999999999999999984311 11 123556689999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEE
Q 004404 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHK 736 (755)
Q Consensus 659 PdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~ 736 (755)
|.-..|++|+.|..|++|.+...+--.. ....+|.+.|.++.|+|... ++++.|.|++||||| ..+.++.
T Consensus 216 pTlpliVSG~DDRqVKlWrmnetKaWEv-------DtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 216 PTLPLIVSGADDRQVKLWRMNETKAWEV-------DTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred CCcceEEecCCcceeeEEEeccccceee-------hhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccccceee
Confidence 9999999999999999999876553322 23569999999999999876 899999999999999 4677888
Q ss_pred eecCCccEEE
Q 004404 737 FKGENYVQYM 746 (755)
Q Consensus 737 ~~GH~~~V~s 746 (755)
|+-.++.-+.
T Consensus 288 frrendRFW~ 297 (1202)
T KOG0292|consen 288 FRRENDRFWI 297 (1202)
T ss_pred eeccCCeEEE
Confidence 8644444333
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=5.8e-25 Score=223.33 Aligned_cols=283 Identities=19% Similarity=0.291 Sum_probs=238.4
Q ss_pred CceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeee---EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCc
Q 004404 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQ---EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (755)
Q Consensus 410 ~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q---~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~ 486 (755)
+...+-.++|+ .++++|+-||.|.+|+..++++..-.+.| .|--|..+|.||.|+.|...||||+.||.|+||.+.
T Consensus 215 h~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 215 HVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred chhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 33334444444 45799999999999999998876544433 244689999999999999999999999999999999
Q ss_pred CCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccC
Q 004404 487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566 (755)
Q Consensus 487 t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH 566 (755)
++.+++.+ ...|...+.++.|+.|+..+.+++.+..+.+... .+++.+.+|+||
T Consensus 294 tG~ClRrF----drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl----------------------KSGK~LKEfrGH 347 (508)
T KOG0275|consen 294 TGQCLRRF----DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL----------------------KSGKCLKEFRGH 347 (508)
T ss_pred cchHHHHh----hhhhccCeeEEEEccCcchhhcccccceEEEecc----------------------ccchhHHHhcCc
Confidence 99999887 5678888999999999998888877776632221 167889999999
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE
Q 004404 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (755)
Q Consensus 567 ~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~ 642 (755)
..-|+...|.++ .++++++.||+|++|+..+.+|+.+|. ..-+|+.+-.-|.+...|+.|....+|.|-++...-+
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 999999999998 689999999999999999999999996 5568999999997888999999999999999865433
Q ss_pred EEeccC---CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 643 VDWNDL---HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 643 v~~~~~---~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
..+... .+...+++++|.|.++++.+.|+.++.|.+.+|++..++. .|...|.+++-+|... .|++-
T Consensus 428 rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~---------VhEkdvIGl~HHPHqN-llAsY 497 (508)
T KOG0275|consen 428 RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP---------VHEKDVIGLTHHPHQN-LLASY 497 (508)
T ss_pred eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee---------cccccccccccCcccc-hhhhh
Confidence 333322 2567888999999999999999999999999999987754 6889999999999876 78888
Q ss_pred ECCCcEEEEE
Q 004404 720 SADSRIRVVD 729 (755)
Q Consensus 720 s~Dg~IrVWD 729 (755)
+.||.+++|.
T Consensus 498 sEDgllKLWk 507 (508)
T KOG0275|consen 498 SEDGLLKLWK 507 (508)
T ss_pred cccchhhhcC
Confidence 9999999994
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=8.7e-24 Score=210.83 Aligned_cols=285 Identities=14% Similarity=0.197 Sum_probs=217.0
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
+++++...|..+.+|-...++... ++.||+++|||+...-+.++|+||+.|.++++||+.+++++..+.
T Consensus 23 DLlFscaKD~~~~vw~s~nGerlG-----ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k------ 91 (327)
T KOG0643|consen 23 DLLFSCAKDSTPTVWYSLNGERLG-----TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK------ 91 (327)
T ss_pred cEEEEecCCCCceEEEecCCceee-----eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee------
Confidence 678889999999999877666544 456999999999999999999999999999999999999988763
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cE
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~ 580 (755)
...++..+.|+.++.+++.......-. ...+....+..+ .-......|+..+..+...++.+-|.|- ..
T Consensus 92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~----~~~v~~fdi~~~------~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 92 TNSPVKRVDFSFGGNLILASTDKQMGY----TCFVSVFDIRDD------SSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred cCCeeEEEeeccCCcEEEEEehhhcCc----ceEEEEEEccCC------hhhhcccCceEEecCCccceeeeeecccCCE
Confidence 345778889999988877653321100 000000000000 0011145678889999999999999996 78
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEe-e-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEc
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIF-S-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYT 658 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~-~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafS 658 (755)
|++|..||.|.+||+++++.+..- . |...|+.|+++| +..+|++++.|.+-++||+.+.++++.+....+|++++++
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 999999999999999998655444 3 999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCcEEE--EECCCCeeeecc---ccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 659 PDGQGALVGSYKGSCHL--YNTSENKLQQKS---PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 659 PdG~~LasGs~DG~I~l--wDl~~~~~~~~~---~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
|-...++.|+.....-+ =..+.++....+ .+.......++|-++|++++|+|+|+ ..++|+.||.|||.-
T Consensus 241 P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-sYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-SYSSGGEDGYVRLHH 315 (327)
T ss_pred cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-ccccCCCCceEEEEE
Confidence 98777777654332222 222223222111 01111234579999999999999998 699999999999964
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.9e-24 Score=214.18 Aligned_cols=245 Identities=17% Similarity=0.306 Sum_probs=202.8
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC-CCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEE
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd-g~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~ 507 (755)
..|++.|.+..... .+..++.+. -.+.+..|+|+++ ...+++++.||+++|||+..
T Consensus 36 G~G~L~ile~~~~~--gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-------------------- 92 (311)
T KOG0277|consen 36 GNGRLFILEVTDPK--GIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-------------------- 92 (311)
T ss_pred cCceEEEEecCCCC--CeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------
Confidence 46777777765222 233333333 5678999999995 45899999999999999521
Q ss_pred EeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEe
Q 004404 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSS 585 (755)
Q Consensus 508 ~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs 585 (755)
..+|++.++.|..+|.++.|++- ..+++++
T Consensus 93 ------------------------------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS 124 (311)
T KOG0277|consen 93 ------------------------------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS 124 (311)
T ss_pred ------------------------------------------------CCcchhHHHhhhhheEEeccccccceeEEeec
Confidence 22467788999999999999985 5688889
Q ss_pred CCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-CcEEEeccCCCCEEEEEEcc-CCC
Q 004404 586 MDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWNDLHEMVTAACYTP-DGQ 662 (755)
Q Consensus 586 ~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-~~~v~~~~~~~~VtsvafSP-dG~ 662 (755)
.|++|+||+...+..+++|. |...|...+|+|...++|+++|.|+++++||++. ++...+..|...|.++.|+. +..
T Consensus 125 WD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~ 204 (311)
T KOG0277|consen 125 WDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN 204 (311)
T ss_pred cCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc
Confidence 99999999999999999996 9999999999998899999999999999999976 45555666667999999998 667
Q ss_pred EEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC---CcceEEeec
Q 004404 663 GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG---IDLVHKFKG 739 (755)
Q Consensus 663 ~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~---~~ll~~~~G 739 (755)
.|++|+.|+.|+.||+++.+... ..+.+|.-.|..+.|+|.....|++++.|-++||||. ..++.++.-
T Consensus 205 vl~Tg~vd~~vr~wDir~~r~pl--------~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~ 276 (311)
T KOG0277|consen 205 VLATGGVDNLVRGWDIRNLRTPL--------FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH 276 (311)
T ss_pred EEEecCCCceEEEEehhhccccc--------eeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc
Confidence 89999999999999999765321 2345999999999999998889999999999999993 457888889
Q ss_pred CCccEEEEEEEEE
Q 004404 740 ENYVQYMVCIVLF 752 (755)
Q Consensus 740 H~~~V~sv~fs~F 752 (755)
|++-+..+.+++|
T Consensus 277 HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 277 HTEFVCGLDWSLF 289 (311)
T ss_pred cceEEeccccccc
Confidence 9999999988776
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=1.1e-24 Score=232.15 Aligned_cols=268 Identities=19% Similarity=0.261 Sum_probs=225.6
Q ss_pred eeeEeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcC-CceeeeeecccccCccccEEEeecCCCCceeccccCCC
Q 004404 448 KCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (755)
Q Consensus 448 ~~q~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t-~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~ 525 (755)
....+.||+..|.++.|.| .+.+|++|+.|+.|+||++-. +++++.+ .+|..++..+.|+.++..+.+++.+.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-----~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-----KGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-----hcchhhhhhhhccccCCeeeeeecce
Confidence 3567889999999999999 899999999999999999976 5666665 78999999999999999999999998
Q ss_pred ceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEE
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLK 602 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~ 602 (755)
.+ .+|+. +++++..|. -...++|+.|+|+ +.|++|+.|+.|+.||+++++.++
T Consensus 281 ~l-----------------------KlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 281 FL-----------------------KLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred ee-----------------------eeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 88 44544 455555554 2345789999997 689999999999999999999988
Q ss_pred Eee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC--CCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 603 IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL--HEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 603 ~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~--~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
.+. |-+.|..|.|-+ ++.+|++.+.|++|+||+.+....+..... .....++..+|+++++++=+.|+.|.+|.+.
T Consensus 337 eYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred HHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecc
Confidence 887 889999999999 999999999999999999998877654433 3456789999999999999999999999875
Q ss_pred CCeeeeccccccccccccCCC--CCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEEE
Q 004404 680 ENKLQQKSPINLQNKKKRSHQ--RKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVLF 752 (755)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~--~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~F 752 (755)
..-.... .+.+++|. +.-..+.|+|||. +|++|..||.+.+|| +-+++.++++|...+..+.+-|-
T Consensus 416 ~~~r~nk------kK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 416 PPFRLNK------KKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred cccccCH------hhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence 4333221 13455775 4567789999998 899999999999999 67899999999999999988663
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=7.5e-25 Score=224.45 Aligned_cols=248 Identities=18% Similarity=0.336 Sum_probs=208.5
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
....|+|+.+. ...+++|..|++|+|||..+.++...+ .||.+.+.++.+.. .++++++.+..+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-----~GHtGSVLCLqyd~--rviisGSSDsTv------- 259 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-----TGHTGSVLCLQYDE--RVIVSGSSDSTV------- 259 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-----hcCCCcEEeeeccc--eEEEecCCCceE-------
Confidence 45679999985 457999999999999999888777665 78899998888765 488888888777
Q ss_pred cccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEE---EEe-ecCCc
Q 004404 535 SINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCL---KIF-SHSDY 609 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~---~~~-~h~~~ 609 (755)
.+|+. +++++.++.+|...|..+.|+ ++++++++.|.+|.+||+.....+ +.+ +|...
T Consensus 260 ----------------rvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 260 ----------------RVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred ----------------EEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 45554 678999999999999999997 699999999999999999876532 233 49999
Q ss_pred eEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec-cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccc
Q 004404 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 610 VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~-~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
|+.+.| +.+++++++.|.+|++|++.+++.+++. +|+..|.++.+. |+++++|+.|.+|++||+..|.++..++
T Consensus 323 VNvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 323 VNVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred eeeecc---ccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh
Confidence 999999 4589999999999999999999998654 566788888775 8999999999999999999999987644
Q ss_pred cccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC----C-------cceEEeecCCccEEEEEEEEE
Q 004404 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG----I-------DLVHKFKGENYVQYMVCIVLF 752 (755)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~----~-------~ll~~~~GH~~~V~sv~fs~F 752 (755)
+|..-|.++.|... .+++|+.||+|+|||. . -++..+-.|++.|+.+.|--|
T Consensus 398 ---------GHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f 460 (499)
T KOG0281|consen 398 ---------GHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF 460 (499)
T ss_pred ---------chHHhhhheeecCc---eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce
Confidence 99999999999764 7999999999999992 1 156677788888888887544
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=4.6e-23 Score=235.14 Aligned_cols=275 Identities=20% Similarity=0.348 Sum_probs=223.6
Q ss_pred eeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceee
Q 004404 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (755)
Q Consensus 413 ~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~ 492 (755)
.+.+.......+.++..+.+|++|+...+... ...+.||.+.|++++|..-+.+|++|+.|.+++|||+.++++..
T Consensus 210 ~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i----~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 210 VVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLI----LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred hhhhheeecCeEEecCCCceeEEeecccceEE----EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence 34444444667889999999999998754432 23378999999999998878899999999999999999999998
Q ss_pred eeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEE
Q 004404 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVL 571 (755)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~ 571 (755)
.+ .+|...+.++...+ ..+++++.+..+ .+|.++ ++.+..+.+|.+.|.
T Consensus 286 ~l-----~gh~stv~~~~~~~--~~~~sgs~D~tV-----------------------kVW~v~n~~~l~l~~~h~~~V~ 335 (537)
T KOG0274|consen 286 SL-----QGHTSSVRCLTIDP--FLLVSGSRDNTV-----------------------KVWDVTNGACLNLLRGHTGPVN 335 (537)
T ss_pred Ee-----cCCCceEEEEEccC--ceEeeccCCceE-----------------------EEEeccCcceEEEeccccccEE
Confidence 87 57777777766544 344445566555 566665 677888888999999
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC-cEEEeccCC
Q 004404 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVVDWNDLH 649 (755)
Q Consensus 572 ~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~-~~v~~~~~~ 649 (755)
++..+ ..++++|+.|++|++||+.++++++++. |..+|+++.+.+ . .++++|+.|++|++||+.+. +++....++
T Consensus 336 ~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h 412 (537)
T KOG0274|consen 336 CVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH 412 (537)
T ss_pred EEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCC
Confidence 99998 7899999999999999999999999997 999999998865 3 99999999999999999999 777666555
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccC-CCCCeEEEEEccCCCeEEEEEECCCcEEEE
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRS-HQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~-h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVW 728 (755)
..+. -.+...+++|++++.|+.|++||..+++.+..+. + |...|+.+++. +..+++++.|+++++|
T Consensus 413 ~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~---------~~~~~~v~~l~~~---~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 413 TSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLE---------GRHVGGVSALALG---KEEILCSSDDGSVKLW 479 (537)
T ss_pred cccc-cccccccceeEeccccccEEEeecccCceeeeec---------cCCcccEEEeecC---cceEEEEecCCeeEEE
Confidence 4433 3334458899999999999999999999987654 4 67888888887 2279999999999999
Q ss_pred E--CCcceEEe
Q 004404 729 D--GIDLVHKF 737 (755)
Q Consensus 729 D--~~~ll~~~ 737 (755)
| .+.++..+
T Consensus 480 dl~~~~~~~~l 490 (537)
T KOG0274|consen 480 DLRSGTLIRTL 490 (537)
T ss_pred ecccCchhhhh
Confidence 9 45666555
No 62
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.3e-23 Score=228.09 Aligned_cols=262 Identities=21% Similarity=0.307 Sum_probs=217.5
Q ss_pred CCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEE
Q 004404 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (755)
Q Consensus 428 ~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~ 507 (755)
.....|++|+..+++...+.. -+...|+++.|+++|.+||.|..+|.|.|||..+.+....+ ...|...+-
T Consensus 194 alg~~vylW~~~s~~v~~l~~-----~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~----~~~h~~rvg 264 (484)
T KOG0305|consen 194 ALGQSVYLWSASSGSVTELCS-----FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL----RGSHASRVG 264 (484)
T ss_pred EecceEEEEecCCCceEEeEe-----cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc----cCCcCceeE
Confidence 345678999988887554443 23899999999999999999999999999999888877776 223778888
Q ss_pred EeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeC
Q 004404 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM 586 (755)
Q Consensus 508 ~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~ 586 (755)
+++|. ...+.++..++.|....... .......+.+|...|..|.|+++ .+|++|+.
T Consensus 265 ~laW~--~~~lssGsr~~~I~~~dvR~---------------------~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn 321 (484)
T KOG0305|consen 265 SLAWN--SSVLSSGSRDGKILNHDVRI---------------------SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN 321 (484)
T ss_pred EEecc--CceEEEecCCCcEEEEEEec---------------------chhhhhhhhcccceeeeeEECCCCCeeccCCC
Confidence 88888 66777777776663322111 11122247899999999999999 88999999
Q ss_pred CCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEE--ECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCE
Q 004404 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISG--SLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQG 663 (755)
Q Consensus 587 DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSg--S~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~ 663 (755)
|+.|.|||.....++..+. |...|.+++|+|....+||+| +.|++|++||+.+++.+........|.+|.|++..+-
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kE 401 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKE 401 (484)
T ss_pred ccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCE
Confidence 9999999997777776664 999999999999888899986 5699999999999999999999999999999999877
Q ss_pred EEE--EECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECC
Q 004404 664 ALV--GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (755)
Q Consensus 664 Las--Gs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~ 731 (755)
|++ |..++.|.||+..+.+.+.. +.+|...|..++++|+|. .+++|+.|.++++|+.+
T Consensus 402 i~sthG~s~n~i~lw~~ps~~~~~~---------l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 402 LLSTHGYSENQITLWKYPSMKLVAE---------LLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLF 461 (484)
T ss_pred EEEecCCCCCcEEEEeccccceeee---------ecCCcceeEEEEECCCCC-EEEEecccCcEEecccc
Confidence 777 56678999999999776654 349999999999999998 89999999999999943
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.3e-23 Score=230.96 Aligned_cols=263 Identities=19% Similarity=0.299 Sum_probs=220.9
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..++++...|.|++||.+-+.+ +..|..|.++|..|+|+|.+.++++||.|-.|+||+..+.+++.++ .+
T Consensus 22 PwILtslHsG~IQlWDYRM~tl-----i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-----~G 91 (1202)
T KOG0292|consen 22 PWILTSLHSGVIQLWDYRMGTL-----IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-----LG 91 (1202)
T ss_pred CEEEEeecCceeeeehhhhhhH-----HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-----cc
Confidence 4567888999999999874443 3456789999999999999999999999999999999999888886 78
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-c
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q 579 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~ 579 (755)
|...+..+.|.+.-..+++++.+..| .+|.. +.+++..+.||..-|.|..|+|. .
T Consensus 92 HlDYVRt~~FHheyPWIlSASDDQTI-----------------------rIWNwqsr~~iavltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 92 HLDYVRTVFFHHEYPWILSASDDQTI-----------------------RIWNWQSRKCIAVLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred ccceeEEeeccCCCceEEEccCCCeE-----------------------EEEeccCCceEEEEecCceEEEeeccCCccc
Confidence 99999999999999999999888888 45554 56889999999999999999995 8
Q ss_pred EEEEEeCCCcEEEEECCC--------C-------------------cEE--EEe-ecCCceEEEEEeeCCCcEEEEEECC
Q 004404 580 HLLSSSMDKTVRLWHLSS--------K-------------------TCL--KIF-SHSDYVTCIQFNPVDDRYFISGSLD 629 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t--------~-------------------~~~--~~~-~h~~~VtsVafsP~dg~~LaSgS~D 629 (755)
.++++|-|.+||+||+.. + .++ +.+ +|...|+-++|+| .-.+|++|+.|
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DD 227 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADD 227 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCc
Confidence 999999999999999851 1 111 223 3999999999999 88999999999
Q ss_pred CcEEEEECCCCc---EEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEE
Q 004404 630 AKVRIWSIPERQ---VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (755)
Q Consensus 630 gtVrIWDl~t~~---~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (755)
..|++|.+...+ +-...+|.+.|.++-|+|....+++.+.|++|++||+...+.++++. -...+-..+
T Consensus 228 RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr---------rendRFW~l 298 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR---------RENDRFWIL 298 (1202)
T ss_pred ceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee---------ccCCeEEEE
Confidence 999999986543 33456788999999999999999999999999999999888777642 334567778
Q ss_pred EEccCCCeEEEEEECCCcEEEEE
Q 004404 707 QFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 707 ~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+-+|... |+.++.|+-+.||.
T Consensus 299 aahP~lN--LfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 299 AAHPELN--LFAAGHDSGMIVFK 319 (1202)
T ss_pred EecCCcc--eeeeecCCceEEEE
Confidence 8888775 66667777777765
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=1.6e-23 Score=224.16 Aligned_cols=284 Identities=15% Similarity=0.209 Sum_probs=202.3
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
..|++|+..|.++++.|.|..|+|||.|-+|++||+..................+.+..+.+++.+..+++.+......+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 45789999999999999999999999999999999965433222112223455678889999998777666554444433
Q ss_pred ecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCC-cEEEEee-
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK-TCLKIFS- 605 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~-~~~~~~~- 605 (755)
..+........+..+..+ .-+...+||...++|.+|+|. +.|++++.||++||||+... +.++++.
T Consensus 241 ~DRdG~~~~e~~KGDQYI----------~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYI----------RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred EccCCceeeeeeccchhh----------hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 333322222222222211 123456799999999999997 77999999999999999764 3444553
Q ss_pred -----cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE---Ee-ccCC--CCEEEEEEccCCCEEEEEECCCcEE
Q 004404 606 -----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV---DW-NDLH--EMVTAACYTPDGQGALVGSYKGSCH 674 (755)
Q Consensus 606 -----h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v---~~-~~~~--~~VtsvafSPdG~~LasGs~DG~I~ 674 (755)
..-+++.++|+| ++++||+|+.||.|.+|+.....+. .. ..|. ..|++|+||+||++|++-+.|++++
T Consensus 311 k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred ccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 334789999999 9999999999999999998554321 11 2333 3899999999999999999999999
Q ss_pred EEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE------CCCcEEEEE--CCcceEEeecCCccEEE
Q 004404 675 LYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS------ADSRIRVVD--GIDLVHKFKGENYVQYM 746 (755)
Q Consensus 675 lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs------~Dg~IrVWD--~~~ll~~~~GH~~~V~s 746 (755)
+||++..+........+ ....+-+.++|+|+.+ +|++|. .-+++.+|| +.+.++++.--...|..
T Consensus 390 vWDLrq~kkpL~~~tgL------~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~ 462 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGL------PTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVR 462 (641)
T ss_pred eeeccccccchhhhcCC------CccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEE
Confidence 99999876543222111 2334567889999987 777773 357899999 45667766655555555
Q ss_pred EEEEE
Q 004404 747 VCIVL 751 (755)
Q Consensus 747 v~fs~ 751 (755)
+.+-|
T Consensus 463 ~~Whp 467 (641)
T KOG0772|consen 463 CLWHP 467 (641)
T ss_pred Eeecc
Confidence 55543
No 65
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.7e-22 Score=203.35 Aligned_cols=267 Identities=22% Similarity=0.253 Sum_probs=203.3
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccC--CCce
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL--DNHL 527 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~--d~~i 527 (755)
+.+..-.+.|++|.|+++|.+|++++.|.+|+|||..+++....+..+ ...+..+.+......+..++. +..+
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-----kyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-----KYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-----cccccEEEEecCCceEEEccCCCCCce
Confidence 445556789999999999999999999999999999999988876422 122233333333333322222 2222
Q ss_pred eeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004404 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (755)
Q Consensus 528 ~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h 606 (755)
. .+-....+.++.|.||...|+.|+.+|- ..+++++.|++|++||++..+|...+..
T Consensus 83 r----------------------yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~ 140 (311)
T KOG1446|consen 83 R----------------------YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL 140 (311)
T ss_pred E----------------------EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec
Confidence 1 2222366889999999999999999996 8999999999999999999888877753
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC--cEEEec----cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVDWN----DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~--~~v~~~----~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~ 680 (755)
.. -..++|.| .|-+||++.....|+|||++.- .+...+ ......+.|.|+|||++|+.++..+.+++.|.-+
T Consensus 141 ~~-~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 141 SG-RPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD 218 (311)
T ss_pred CC-CcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence 32 24568999 9999999998889999999863 222222 2346789999999999999999999999999999
Q ss_pred CeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeec-CCccEEEEEEEEE
Q 004404 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKG-ENYVQYMVCIVLF 752 (755)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~G-H~~~V~sv~fs~F 752 (755)
|..+..+.... ....--.+..|.|+++ ++++|+.||+|.+|+ ++..+.+++| +...+..+.|.|-
T Consensus 219 G~~~~tfs~~~------~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 219 GTVKSTFSGYP------NAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred CcEeeeEeecc------CCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 99887765321 1111125677999998 899999999999999 6889999999 5666777766653
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.3e-23 Score=206.62 Aligned_cols=241 Identities=17% Similarity=0.305 Sum_probs=199.9
Q ss_pred CCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcC
Q 004404 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVE 487 (755)
Q Consensus 409 g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t 487 (755)
++-.-+..+....+.+++...||.+++||...+ ..+++.++.|+..|.++.|++ +++.++++|.|++|++|+..-
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~----s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMP----SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCC----CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 345667777788888999999999999995433 335667889999999999999 566888999999999998632
Q ss_pred CceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCC
Q 004404 488 SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567 (755)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~ 567 (755)
. +.+.+|.||.
T Consensus 137 ~---------------------------------------------------------------------~Sv~Tf~gh~ 147 (311)
T KOG0277|consen 137 P---------------------------------------------------------------------NSVQTFNGHN 147 (311)
T ss_pred C---------------------------------------------------------------------cceEeecCCc
Confidence 2 2355688999
Q ss_pred CCEEEEEecCC--cEEEEEeCCCcEEEEECCC-CcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc-EE
Q 004404 568 DDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS-KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VV 643 (755)
Q Consensus 568 ~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t-~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~-~v 643 (755)
.-|+...|+|. +.|++++.|+++++||++. |+.+....|...|.|+.|+..+.+.+++|+.|+.|++||++.-+ ++
T Consensus 148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl 227 (311)
T KOG0277|consen 148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL 227 (311)
T ss_pred cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc
Confidence 99999999996 8999999999999999986 45555334999999999999888999999999999999998754 23
Q ss_pred -EeccCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 644 -DWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 644 -~~~~~~~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
.+..|.-.|..++|||.. ..|++++.|=+++|||...+.-... +..-|..-|.++.|++..+.++++++.
T Consensus 228 ~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e--------~~~~HtEFv~g~Dws~~~~~~vAs~gW 299 (311)
T KOG0277|consen 228 FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE--------TVDHHTEFVCGLDWSLFDPGQVASTGW 299 (311)
T ss_pred eeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh--------hhhccceEEeccccccccCceeeeccc
Confidence 556777799999999965 6888999999999999985543322 123688999999999987779999999
Q ss_pred CCcEEEEEC
Q 004404 722 DSRIRVVDG 730 (755)
Q Consensus 722 Dg~IrVWD~ 730 (755)
|..++||+.
T Consensus 300 De~l~Vw~p 308 (311)
T KOG0277|consen 300 DELLYVWNP 308 (311)
T ss_pred ccceeeecc
Confidence 999999983
No 67
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=190.27 Aligned_cols=253 Identities=20% Similarity=0.297 Sum_probs=195.1
Q ss_pred eeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCC----CceeccccC
Q 004404 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE----PTSLSPKHL 523 (755)
Q Consensus 448 ~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~d----g~~l~~~s~ 523 (755)
.++.-+.|+++|+|.+|+|+|++||||+.|.+|++..+........-.......|...+..++|..+ +.+++++..
T Consensus 81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 3444568999999999999999999999999999987654433222111222445555555555433 445554432
Q ss_pred -CCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEE
Q 004404 524 -DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLK 602 (755)
Q Consensus 524 -d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~ 602 (755)
+..+.+. .-..++..+.+.||++.|.++--...-++++|+.|++|++||++-..++.
T Consensus 161 gdc~iy~t----------------------dc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 161 GDCKIYIT----------------------DCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred CcceEEEe----------------------ecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceee
Confidence 2333211 12256788899999999999864446789999999999999999999999
Q ss_pred Eee---c-----CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcE
Q 004404 603 IFS---H-----SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (755)
Q Consensus 603 ~~~---h-----~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I 673 (755)
++. | .+.|.+++..| .+++|++|-.|....+||++.++++ .+..|...|.++.|+|...|+++++.|..|
T Consensus 219 ~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~i 297 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI 297 (350)
T ss_pred eccCcccCCCcccceeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence 885 2 35799999999 9999999999999999999999887 567788899999999999999999999999
Q ss_pred EEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 674 ~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
++-|+... +...+++ .....|...+..+.|+|+.- -+++.+.|.++.+|-
T Consensus 298 kltdlqgd-la~el~~----~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa 347 (350)
T KOG0641|consen 298 KLTDLQGD-LAHELPI----MVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWA 347 (350)
T ss_pred EEeecccc-hhhcCce----EEEEeccCceEEEEecCccc-eeeeccCcceEEEec
Confidence 99999753 3332222 22347889999999999875 689999999999995
No 68
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=1.5e-22 Score=223.50 Aligned_cols=257 Identities=22% Similarity=0.297 Sum_probs=217.6
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEE-EEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS-IKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~s-I~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
.+++++.|+++++|....++... ...+++|.+-|.. ++|-+ ++-.|++|+.|.+|.+|.+...+....+ .
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~---~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-----k 98 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLE---THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-----K 98 (745)
T ss_pred EEeecCCCCceeeeeccCccccc---ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh-----h
Confidence 47899999999999987666543 3447789999888 88886 5557999999999999999888877775 7
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcE
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH 580 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~ 580 (755)
+|...+.++....+++ +++++.+.....|+.+ +....+.+|+..|+++..-|.+.
T Consensus 99 gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~------------------------~l~~~l~gH~asVWAv~~l~e~~ 153 (745)
T KOG0301|consen 99 GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG------------------------ELVYSLQGHTASVWAVASLPENT 153 (745)
T ss_pred ccccceeeeecCCcCc-eEecccccceEEecch------------------------hhhcccCCcchheeeeeecCCCc
Confidence 8999999999888888 7788888877444333 44556899999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEcc
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSP 659 (755)
++||+.|++|++|.- ++++++|. |++.|..+++-+ +..|++|+.||.|++|++....+....+|...|++++..+
T Consensus 154 ~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred EEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecC
Confidence 999999999999974 78888986 999999999987 4579999999999999996666668889999999999888
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 660 dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
++..+++++.|++++||+.. .+.+.+. -....|.++.+-++|. |++|+.||.||||.
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~---------lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVIT---------LPTTSIWSAKVLLNGD--IVVGGSDGRVRVFT 286 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEe---------cCccceEEEEEeeCCC--EEEeccCceEEEEE
Confidence 89999999999999999987 4444332 2334799999999986 99999999999996
No 69
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.5e-22 Score=197.20 Aligned_cols=264 Identities=16% Similarity=0.237 Sum_probs=216.9
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
++.++...|.+|++|+...+.+ +++..+|...|..++.+.|+..|++|+.|..|.+||+.+++..+.+ .+
T Consensus 30 nY~ltcGsdrtvrLWNp~rg~l-----iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-----rg 99 (307)
T KOG0316|consen 30 NYCLTCGSDRTVRLWNPLRGAL-----IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-----RG 99 (307)
T ss_pred CEEEEcCCCceEEeecccccce-----eeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-----cc
Confidence 3455667899999999886654 4556799999999999999999999999999999999999999887 78
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEE
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~L 581 (755)
|...+..+.|+.+..++++++.+..+..|... .-+.+|++.+......|.++... ...+
T Consensus 100 H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR--------------------S~s~ePiQildea~D~V~Si~v~-~heI 158 (307)
T KOG0316|consen 100 HLAQVNTVRFNEESSVVASGSFDSSVRLWDCR--------------------SRSFEPIQILDEAKDGVSSIDVA-EHEI 158 (307)
T ss_pred ccceeeEEEecCcceEEEeccccceeEEEEcc--------------------cCCCCccchhhhhcCceeEEEec-ccEE
Confidence 99999999999999999999998887443322 12457888888888899998876 4679
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec-cCCC--CEEEEEEc
Q 004404 582 LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHE--MVTAACYT 658 (755)
Q Consensus 582 aSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~-~~~~--~VtsvafS 658 (755)
++|+.||++|.||++.|+...-+ ...+|+|+.|++ +++..+.++.|++|++.|-.+++++..+ +|.. .-..+++.
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred EeeccCCcEEEEEeecceeehhh-cCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence 99999999999999988764333 467899999999 9999999999999999999999988544 4443 44567788
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCC-eEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK-ITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 659 PdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~-Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.....+++|+.||.|++||+.....+..+. .|... |+++.++|.-. .|+++.. +.+.+|-
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~---------~~~~v~v~dl~~hp~~~-~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQISKLS---------VVSTVIVTDLSCHPTMD-DFITATG-HGDLFWY 297 (307)
T ss_pred ccceeEEeccCCceEEEEEeccceeeeeec---------cCCceeEEeeecccCcc-ceeEecC-Cceecee
Confidence 778899999999999999999988876543 45555 89999999876 4555543 4556664
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-22 Score=198.60 Aligned_cols=220 Identities=21% Similarity=0.388 Sum_probs=189.8
Q ss_pred eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeec
Q 004404 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (755)
Q Consensus 452 l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~ 531 (755)
|+||..+|+.|+|+.+|.+|+||+.|.++.||--.+++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe------------------------------------------ 43 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE------------------------------------------ 43 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCc------------------------------------------
Confidence 67999999999999999999999999999999654433
Q ss_pred ccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCce
Q 004404 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYV 610 (755)
Q Consensus 532 ~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~V 610 (755)
.+-++.||++.|+|+....+ .++++|+.|.+++|||+.+|+++.++....+|
T Consensus 44 ---------------------------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~V 96 (327)
T KOG0643|consen 44 ---------------------------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPV 96 (327)
T ss_pred ---------------------------eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCee
Confidence 45567899999999999877 88999999999999999999999999999999
Q ss_pred EEEEEeeCCCcEEEEEECC-----CcEEEEECCC-------Cc-EEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEE
Q 004404 611 TCIQFNPVDDRYFISGSLD-----AKVRIWSIPE-------RQ-VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677 (755)
Q Consensus 611 tsVafsP~dg~~LaSgS~D-----gtVrIWDl~t-------~~-~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwD 677 (755)
..+.|++ ++++++.+..+ +.|.++|++. .. ...+..+...++.+-|.|-+++|++|..+|.|.+||
T Consensus 97 k~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~d 175 (327)
T KOG0643|consen 97 KRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYD 175 (327)
T ss_pred EEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEE
Confidence 9999999 88888777653 6699999983 33 345666678999999999999999999999999999
Q ss_pred CCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+++++..... ...|...|+.++++|+.. ++++++.|.+-++|| +-+++++|. -..+|++++++|
T Consensus 176 a~~g~~~v~s--------~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP 241 (327)
T KOG0643|consen 176 ARTGKELVDS--------DEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISP 241 (327)
T ss_pred cccCceeeec--------hhhhccccccccccCCcc-eEEecccCccceeeeccceeeEEEee-ecccccceeccc
Confidence 9998665432 246888999999999986 999999999999999 456777776 346788888877
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.1e-22 Score=214.00 Aligned_cols=256 Identities=22% Similarity=0.326 Sum_probs=208.0
Q ss_pred cCCEEEEEEcCCCCE-EEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 456 NGSIWSIKFSLDGRY-LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~-LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
.++|.+|+|+|...+ +|+.+ .-.|.||+..+......+ ......+..+.+..||.++++++..+.+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~-----srFk~~v~s~~fR~DG~LlaaGD~sG~V------- 92 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTF-----SRFKDVVYSVDFRSDGRLLAAGDESGHV------- 92 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhH-----HhhccceeEEEeecCCeEEEccCCcCcE-------
Confidence 468999999995442 33333 247999998777655544 3345678899999999999999999988
Q ss_pred cccccccccCcccccceeeecCCC-ceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEee-cCCce
Q 004404 535 SINRKSLSLDHMVVPETVFALSDK-PICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYV 610 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~k-~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~V 610 (755)
.+++...+ .++.+.+|+.+|..+.|+|. ..|++|+.|+.+++||+.+......+. |+++|
T Consensus 93 ----------------~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 93 ----------------KVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred ----------------EEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence 45553332 45778999999999999996 678899999999999999988754554 99999
Q ss_pred EEEEEeeCCCcEEEEEECCCcEEEEECCCC-cEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccc
Q 004404 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (755)
Q Consensus 611 tsVafsP~dg~~LaSgS~DgtVrIWDl~t~-~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i 689 (755)
.|.+|+|.++.++++|+.||+|++||++.. ..+..+.|..+|..+.+-|.|..|++++ ...|++||+.+|......
T Consensus 157 R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~-- 233 (487)
T KOG0310|consen 157 RCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTS-- 233 (487)
T ss_pred EeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhh--
Confidence 999999977889999999999999999987 6677889999999999999999999886 568999999966554432
Q ss_pred ccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEeecCCccEEEEEEEE
Q 004404 690 NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 690 ~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+..|.+.||++.+..++. .|++++-|+.|+|||+ .+.+..++ ..++|.+++.++
T Consensus 234 ------~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~ 289 (487)
T KOG0310|consen 234 ------MFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP 289 (487)
T ss_pred ------hhcccceEEEEEeecCCc-eEeecccccceEEEEccceEEEEeee-cccceeeEEecC
Confidence 225999999999999886 8999999999999994 45555554 667888887765
No 72
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=4.2e-23 Score=220.90 Aligned_cols=306 Identities=16% Similarity=0.241 Sum_probs=213.3
Q ss_pred HHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCc----cccccCCcccccceeEEeeccccccccCccccCC
Q 004404 333 EMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGM----KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTS 405 (755)
Q Consensus 333 ~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~----~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~ 405 (755)
.+|.||+.+|..|++.+. +++||.|.+|+ +||...-.. .+.+...-...|+++.++++|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~-~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg------------- 226 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVK-FWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG------------- 226 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEE-EEecccccccchhhhccCcccccccceeeecCCC-------------
Confidence 467999999999999998 99999999999 999864211 111112222234444444432
Q ss_pred ccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceee-------eeEeecccCCEEEEEEcCCCC-EEEEEECC
Q 004404 406 SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYK-------CQEIQAHNGSIWSIKFSLDGR-YLASAGED 477 (755)
Q Consensus 406 ~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~-------~q~l~gH~~~I~sI~fSpdg~-~LaTgs~D 477 (755)
+.++..+..-.++++|....++....+ ...-+||...++|.+|+|+.+ .++|++.|
T Consensus 227 ----------------~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D 290 (641)
T KOG0772|consen 227 ----------------DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD 290 (641)
T ss_pred ----------------CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC
Confidence 112222333444555554333321111 112369999999999999654 89999999
Q ss_pred CcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC
Q 004404 478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD 557 (755)
Q Consensus 478 GtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~ 557 (755)
|++|||++...+...++...
T Consensus 291 gtlRiWdv~~~k~q~qVik~------------------------------------------------------------ 310 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQLQVIKT------------------------------------------------------------ 310 (641)
T ss_pred CcEEEEecCCchhheeEEee------------------------------------------------------------
Confidence 99999999765433222100
Q ss_pred CceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCc--EEEEee--cCC--ceEEEEEeeCCCcEEEEEECCC
Q 004404 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CLKIFS--HSD--YVTCIQFNPVDDRYFISGSLDA 630 (755)
Q Consensus 558 k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~--~~~~~~--h~~--~VtsVafsP~dg~~LaSgS~Dg 630 (755)
..-.+..-.++.++|+++ ..||+|..||.|.+|+..... +...+. |.. .|+||.|++ ++++|++-+.|+
T Consensus 311 ---k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 311 ---KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDD 386 (641)
T ss_pred ---ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCC
Confidence 000122345888999999 668899999999999975432 222222 776 899999999 999999999999
Q ss_pred cEEEEECCCCc-EE-EeccC--CCCEEEEEEccCCCEEEEEEC------CCcEEEEECCCCeeeeccccccccccccCCC
Q 004404 631 KVRIWSIPERQ-VV-DWNDL--HEMVTAACYTPDGQGALVGSY------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (755)
Q Consensus 631 tVrIWDl~t~~-~v-~~~~~--~~~VtsvafSPdG~~LasGs~------DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (755)
++++||++..+ ++ .+.+. ...-+.++|||+.++|++|+. .|.+++||..+...++.+.+ ..
T Consensus 387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i---------~~ 457 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI---------ST 457 (641)
T ss_pred ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC---------CC
Confidence 99999998743 33 23333 246688999999999999764 57899999999888887653 36
Q ss_pred CCeEEEEEccCCCeEEEEEECCCcEEEE-E-----CCcceEEeecCCc
Q 004404 701 RKITGFQFAPGSSSEVLVTSADSRIRVV-D-----GIDLVHKFKGENY 742 (755)
Q Consensus 701 ~~Vtsl~fsPdg~~~L~sgs~Dg~IrVW-D-----~~~ll~~~~GH~~ 742 (755)
..|..+.|+|.=. +|++++.||+++|| | -+..++..+.|+.
T Consensus 458 aSvv~~~WhpkLN-Qi~~gsgdG~~~vyYdp~~S~RGak~cv~k~~rk 504 (641)
T KOG0772|consen 458 ASVVRCLWHPKLN-QIFAGSGDGTAHVYYDPNESIRGAKLCVVKPPRK 504 (641)
T ss_pred ceEEEEeecchhh-heeeecCCCceEEEECccccccchhheeecCccc
Confidence 6789999999866 79999999999986 4 1445555555543
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1.2e-22 Score=205.99 Aligned_cols=233 Identities=20% Similarity=0.368 Sum_probs=189.0
Q ss_pred eeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCc
Q 004404 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (755)
Q Consensus 447 ~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~ 526 (755)
+....+..|++++.+.+|+|||.++|||+.|..|+|.|++..-...... . +..+..
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~--------e-------------m~~~~~--- 158 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPK--------E-------------MISGDT--- 158 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchh--------h-------------hccCCc---
Confidence 3344567899999999999999999999999999999985321100000 0 000000
Q ss_pred eeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCC---cEEE
Q 004404 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK---TCLK 602 (755)
Q Consensus 527 i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~---~~~~ 602 (755)
......+++|..|..+|++|.|+|. ..|++++.|++|++||+... +..+
T Consensus 159 ---------------------------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K 211 (430)
T KOG0640|consen 159 ---------------------------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFK 211 (430)
T ss_pred ---------------------------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHH
Confidence 0011346789999999999999997 88999999999999999864 3445
Q ss_pred EeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe----ccCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 004404 603 IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW----NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (755)
Q Consensus 603 ~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~----~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl 678 (755)
+|....+|.+|.|+| .|.+|+.|..-.++++||+.+-++... ..|.+.|+++.+++.|++.++|+.||.|+|||-
T Consensus 212 ~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 212 VFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred HhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence 566788999999999 999999999999999999999887632 345678999999999999999999999999999
Q ss_pred CCCeeeeccccccccccccCCCC-CeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecC
Q 004404 679 SENKLQQKSPINLQNKKKRSHQR-KITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGE 740 (755)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~-~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH 740 (755)
-+++++.++. +.|.+ .|.+..|..+++ ++++.+.|..|++|. ++.++..|.|-
T Consensus 291 VS~rCv~t~~--------~AH~gsevcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 291 VSNRCVRTIG--------NAHGGSEVCSAVFTKNGK-YILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred ccHHHHHHHH--------hhcCCceeeeEEEccCCe-EEeecCCcceeeeeeecCCceEEEEecC
Confidence 9998887654 36655 689999999998 899999999999999 68888888875
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=8e-23 Score=214.28 Aligned_cols=266 Identities=18% Similarity=0.251 Sum_probs=216.6
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
.+.+++|..|..|++|++...+ .....+|.|..++|+.+.|.++++++++++.|+.+++|++...+...++ .
T Consensus 187 sdtlatgg~Dr~Ik~W~v~~~k---~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-----s 258 (459)
T KOG0288|consen 187 SDTLATGGSDRIIKLWNVLGEK---SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-----S 258 (459)
T ss_pred cchhhhcchhhhhhhhhcccch---hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-----c
Confidence 3557899999999999987555 3345678889999999999999999999999999999999988877776 6
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcE
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH 580 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~ 580 (755)
+|...+..+.+......+++++.+..+..|...+. .+..++. ....+.+|+.+ ...
T Consensus 259 GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~----------------------~C~kt~l-~~S~cnDI~~~-~~~ 314 (459)
T KOG0288|consen 259 GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA----------------------YCSKTVL-PGSQCNDIVCS-ISD 314 (459)
T ss_pred ccccceeeehhhccccceeeccccchhhhhhhhhh----------------------heecccc-ccccccceEec-cee
Confidence 78888988888877666777777777754443331 1111111 12334555554 356
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC-----CCEEEE
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-----EMVTAA 655 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~-----~~Vtsv 655 (755)
+++|..|++||+||++...+.......+.|+++..++ ++..|++++.|.++.+.|+++..+...+... ...+.+
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv 393 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV 393 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence 8899999999999999999999998777999999999 9999999999999999999998877554332 358899
Q ss_pred EEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCC-CeEEEEEccCCCeEEEEEECCCcEEEE
Q 004404 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR-KITGFQFAPGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 656 afSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~-~Vtsl~fsPdg~~~L~sgs~Dg~IrVW 728 (755)
+|||++.|+++|+.||.|+||++.++++...... .+.. .|+++.|+|.|. .|++++.++.+.+|
T Consensus 394 vfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~--------s~s~~aI~s~~W~~sG~-~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL--------STSNAAITSLSWNPSGS-GLLSADKQKAVTLW 458 (459)
T ss_pred EECCCCceeeeccCCCcEEEEEccCceEEEEecc--------CCCCcceEEEEEcCCCc-hhhcccCCcceEec
Confidence 9999999999999999999999999999876542 2333 799999999998 79999999999999
No 75
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4.3e-22 Score=211.50 Aligned_cols=274 Identities=22% Similarity=0.327 Sum_probs=222.0
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecc------------cc-cCccccEEEeecCCCCc
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK------------QE-DGHLNMLLLANGSPEPT 516 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~------------~~-~~~~~~v~~v~~s~dg~ 516 (755)
+.+..|.-+|.+|+++|++++.++++.|++|.-|++.+++....+... .. .+|...+.+++.++|+.
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 345679999999999999999999999999999999888754222111 11 37888899999999999
Q ss_pred eeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEE
Q 004404 517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (755)
Q Consensus 517 ~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWD 594 (755)
+++++..+..+. +|.. +.++++.|.+|.+.|.+++|-.. ..|++++.|++|++|+
T Consensus 216 ylatgg~d~~v~-----------------------Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 216 YLATGGRDRHVQ-----------------------IWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred EEEecCCCceEE-----------------------EecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence 999998888873 4443 55788889999999999999876 7899999999999999
Q ss_pred CCCCcEEEEe-ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcE
Q 004404 595 LSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (755)
Q Consensus 595 l~t~~~~~~~-~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I 673 (755)
+.....+.++ +|.+.|.+|.... -++.+-+|+.|+++++|++.....+.+..+...+-+++|-. ...+++|+.+|.|
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSI 350 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceE
Confidence 9987777666 6999999999886 66777777799999999998777777788888999999975 4589999999999
Q ss_pred EEEECCCCeeeeccccccccccc---cCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC------CcceEEeecCCccE
Q 004404 674 HLYNTSENKLQQKSPINLQNKKK---RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG------IDLVHKFKGENYVQ 744 (755)
Q Consensus 674 ~lwDl~~~~~~~~~~i~~~~~~~---~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~------~~ll~~~~GH~~~V 744 (755)
.+|++...+++.+..+....... ..+...|++++..|... ++++|+.+|.||+|-. .+++..+. ...-|
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfV 428 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFV 428 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCccccceeeecc-cccEE
Confidence 99999999888776543332222 12234899999999877 8999999999999983 34455554 45557
Q ss_pred EEEEEE
Q 004404 745 YMVCIV 750 (755)
Q Consensus 745 ~sv~fs 750 (755)
++++|+
T Consensus 429 Nsl~f~ 434 (479)
T KOG0299|consen 429 NSLAFS 434 (479)
T ss_pred EEEEEc
Confidence 777754
No 76
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=5.3e-21 Score=204.53 Aligned_cols=371 Identities=16% Similarity=0.146 Sum_probs=264.9
Q ss_pred hcCCcHHHHHHHhhcc---cccCCCC--------CccccccCCCCCCccccccCCcccccceeEEeeccc-c--------
Q 004404 335 CVGHSPIVQELMRRQN---VEEGNKD--------SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH-K-------- 394 (755)
Q Consensus 335 ~~GHs~~V~~l~~~~~---~~sgs~D--------~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~-~-------- 394 (755)
+.||..-|..++..|+ +++|..- ..+| +||..+-..++-+. ..-+.|..++|+.... .
T Consensus 100 y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvr-iWdsv~L~TL~V~g-~f~~GV~~vaFsk~~~G~~l~~vD~s 177 (626)
T KOG2106|consen 100 YLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVR-IWDSVTLSTLHVIG-FFDRGVTCVAFSKINGGSLLCAVDDS 177 (626)
T ss_pred ccCCCCceEEEeecCCceeeccCcccccCCCcCCCeee-ecccccceeeeeec-cccccceeeeecccCCCceEEEecCC
Confidence 5899999999999997 5544333 4578 89976655555444 4445577777776311 1
Q ss_pred ccccCccccCCccCCCce---------eeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecc-cCCEEEEEE
Q 004404 395 ERRSSDERDTSSEKGGRR---------SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAH-NGSIWSIKF 464 (755)
Q Consensus 395 ~~~~~~~~~~~~~~g~~~---------~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH-~~~I~sI~f 464 (755)
.+..--.|+|+.+..... .+..-+...+ ++.....+.+..|++..+-+....-+ ++.+ +.-|.||+|
T Consensus 178 ~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~n-liit~Gk~H~~Fw~~~~~~l~k~~~~--fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPN-LIITCGKGHLYFWTLRGGSLVKRQGI--FEKREKKFVLCVTF 254 (626)
T ss_pred CccccchhhchhhhccCcceeccceEEEEEeccCCCc-EEEEeCCceEEEEEccCCceEEEeec--cccccceEEEEEEE
Confidence 111223456654322211 1222222223 45556788999998887766543332 3333 367999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccccccccccccc-
Q 004404 465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL- 543 (755)
Q Consensus 465 Spdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~- 543 (755)
.++|. ++||..+|.|.||+..+.+..... ..|...++++....+|+++. +..+..+..|...- .......+
T Consensus 255 ~engd-viTgDS~G~i~Iw~~~~~~~~k~~-----~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y-~k~r~~elP 326 (626)
T KOG2106|consen 255 LENGD-VITGDSGGNILIWSKGTNRISKQV-----HAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY-RKLRETELP 326 (626)
T ss_pred cCCCC-EEeecCCceEEEEeCCCceEEeEe-----eecCCceEEEEEecCccEee-cCccceEEeccccc-cccccccCc
Confidence 99997 889999999999999776655554 36778899999999999998 77777766665221 11111111
Q ss_pred Ccccccceee------------------ecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEe
Q 004404 544 DHMVVPETVF------------------ALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (755)
Q Consensus 544 d~~~~~~~v~------------------~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~ 604 (755)
+....++.+. .+.........+|....+.++.+|+ ..|++++.|+.|+||+ ..+++.+.
T Consensus 327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~ 404 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK 404 (626)
T ss_pred hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE
Confidence 1111111111 1122334456789999999999998 8899999999999999 56666666
Q ss_pred ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 605 ~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
....++.|+.|+| .+ .++.|+..|...+.|+.+..++....-.++++.|+|+|+|.+||+|+.|+.|+||.+..+...
T Consensus 405 ~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 405 IIEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred EecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 6889999999999 67 999999999999999999888877666899999999999999999999999999999876554
Q ss_pred eccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
.... -+.|..+|+.+.|++|++ +|.+-+.|-.|-.|..
T Consensus 483 y~r~-------~k~~gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 483 YSRV-------GKCSGSPITHLDWSSDSQ-FLVSNSGDYEILYWKP 520 (626)
T ss_pred EEEe-------eeecCceeEEeeecCCCc-eEEeccCceEEEEEcc
Confidence 4321 123448999999999998 8999999999999974
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=4.7e-23 Score=216.02 Aligned_cols=264 Identities=22% Similarity=0.284 Sum_probs=222.2
Q ss_pred EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc--eeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 451 ~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~--~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
.+..|.+.|..+.|-++...|+||+.|..|++|++...+ .... ..+....+..+.+.+++..+++.+.+...
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t-----LaGs~g~it~~d~d~~~~~~iAas~d~~~- 243 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIST-----LAGSLGNITSIDFDSDNKHVIAASNDKNL- 243 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhh-----hhccCCCcceeeecCCCceEEeecCCCce-
Confidence 467899999999999998899999999999999986555 2222 25566778888999998888887777765
Q ss_pred eecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h 606 (755)
.+|.. ..+...+|.||++.|+++.|... ..+++|+.|.+|++||+....|.+++-.
T Consensus 244 ----------------------r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~ 301 (459)
T KOG0288|consen 244 ----------------------RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP 301 (459)
T ss_pred ----------------------eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc
Confidence 34444 34667889999999999999877 3499999999999999999999999888
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
...+..|+.++ ..+++|..|++||+||+++..+.......+.|+++..+++|..|++.+.|.++.+.|+++....+.
T Consensus 302 ~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 302 GSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT 378 (459)
T ss_pred cccccceEecc---eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEE
Confidence 88888888864 679999999999999999999998888999999999999999999999999999999999888776
Q ss_pred cccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCcc--EEEEEEEE
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYV--QYMVCIVL 751 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~--V~sv~fs~ 751 (755)
+.-.. -+.+| .++.+.|+|++. |+++||.||.|+||+ ++++..+++..... |++++|.+
T Consensus 379 ~sA~g---~k~as--DwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 379 FSAEG---FKCAS--DWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred eeccc---ccccc--ccceeEECCCCc-eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC
Confidence 54211 11133 389999999998 899999999999999 68888888876555 99888865
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.4e-21 Score=194.62 Aligned_cols=256 Identities=17% Similarity=0.219 Sum_probs=204.2
Q ss_pred EEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCc
Q 004404 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
+++|+-++++.+|++....+. +.....+|.+.|-.++|+| ...+|++++.|.+|++||+..+++...+..
T Consensus 35 lasgs~dktv~v~n~e~~r~~---~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~------ 105 (313)
T KOG1407|consen 35 LASGSFDKTVSVWNLERDRFR---KELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET------ 105 (313)
T ss_pred eeecccCCceEEEEecchhhh---hhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec------
Confidence 578899999999998765332 2234679999999999998 566999999999999999999988877632
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEE
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL 581 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~L 581 (755)
...-..+.|+|++..++.+..+..+... ...+.+.+.. ......+..++|+.+ .+|
T Consensus 106 ~~eni~i~wsp~g~~~~~~~kdD~it~i----------------------d~r~~~~~~~-~~~~~e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 106 KGENINITWSPDGEYIAVGNKDDRITFI----------------------DARTYKIVNE-EQFKFEVNEISWNNSNDLF 162 (313)
T ss_pred cCcceEEEEcCCCCEEEEecCcccEEEE----------------------Eecccceeeh-hcccceeeeeeecCCCCEE
Confidence 1223467899999999888777665321 1112222222 223345788888865 666
Q ss_pred EEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEcc
Q 004404 582 LSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTP 659 (755)
Q Consensus 582 aSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSP 659 (755)
+....-|+|.|.....-++++.+. |+....||.|+| +|++|++|+.|..+-+||+...-+++ +..+.-+|..+.|+.
T Consensus 163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~ 241 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH 241 (313)
T ss_pred EEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc
Confidence 666667999999999999999997 999999999999 99999999999999999998877664 445667999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC
Q 004404 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (755)
Q Consensus 660 dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg 723 (755)
||++||+|+.|..|-|=++++|..+..+ .+.++...|+|+|... +|+-++.|.
T Consensus 242 dg~~lASaSEDh~IDIA~vetGd~~~eI----------~~~~~t~tVAWHPk~~-LLAyA~ddk 294 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETGDRVWEI----------PCEGPTFTVAWHPKRP-LLAYACDDK 294 (313)
T ss_pred CcceeeccCccceEEeEecccCCeEEEe----------eccCCceeEEecCCCc-eeeEEecCC
Confidence 9999999999999999999999988765 4778899999999876 777776653
No 79
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.2e-22 Score=209.97 Aligned_cols=257 Identities=16% Similarity=0.257 Sum_probs=200.5
Q ss_pred EEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCcc
Q 004404 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~ 503 (755)
+++|+.||.|++||+...+ +...|++|.+.|..|++.. ..++|+|.|.+|+.|.+.-. ....+.. .
T Consensus 82 ~aSGs~DG~VkiWnlsqR~-----~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~tilg------~ 147 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQRE-----CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTILG------K 147 (433)
T ss_pred hhccccCceEEEEehhhhh-----hhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceeeec------c
Confidence 6899999999999988544 3456789999999999986 67999999999999997542 2222210 1
Q ss_pred ccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC--cE
Q 004404 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--QH 580 (755)
Q Consensus 504 ~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd--~~ 580 (755)
..+..+........+++++... .+|+. ...|+..+.--...|.++.|+|- ..
T Consensus 148 s~~~gIdh~~~~~~FaTcGe~i-------------------------~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 148 SVYLGIDHHRKNSVFATCGEQI-------------------------DIWDEQRDNPVSSMSWGADSISSVKFNPVETSI 202 (433)
T ss_pred ccccccccccccccccccCcee-------------------------eecccccCCccceeecCCCceeEEecCCCcchh
Confidence 1112222222233333332221 23443 34677888878888999999996 77
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc-EE-EeccCCCCEEEEEEc
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VV-DWNDLHEMVTAACYT 658 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~-~v-~~~~~~~~VtsvafS 658 (755)
|++|+.|+.|.|||++++.+++.......-+.|+|+| ....|++|++|..++.||++... ++ ...+|-..|.++.|+
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 8899999999999999999999888778889999999 99999999999999999998743 33 455677899999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 659 PdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
|.|+-+++|+.|.+|+||.+..+.....+.. ..-..|.++.|+-|.+ ++++||+|+.||+|.
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYht--------kRMq~V~~Vk~S~Dsk-yi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--------KRMQHVFCVKYSMDSK-YIISGSDDGNVRLWK 343 (433)
T ss_pred CCcchhccccccceEEEeecCCCcchhhhhH--------hhhheeeEEEEecccc-EEEecCCCcceeeee
Confidence 9999999999999999999998876654321 1224699999999988 999999999999998
No 80
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=2.2e-22 Score=204.69 Aligned_cols=264 Identities=21% Similarity=0.291 Sum_probs=219.6
Q ss_pred cccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeee---cccccCccccEEEeecCCCCceeccccCCCceeee
Q 004404 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL---EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~---~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
+.+.-+-|..|+|||+||++|+.||.|-||+..+++....+. ......+..++.++.|+.|..+++++..++.+.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK-- 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK-- 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE--
Confidence 566778999999999999999999999999999988765543 112234667889999999999999999999984
Q ss_pred cccccccccccccCcccccceeeec-CCCceEEec-cCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-c
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQ-GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~-gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h 606 (755)
+|.+ ++.+++.|. +|+..|+|+.|+.+ ..+++++.|.+||+.-+..|++++.|. |
T Consensus 289 ---------------------vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 289 ---------------------VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred ---------------------EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc
Confidence 4433 677888886 89999999999998 679999999999999999999999996 9
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc---CCCCEEEEEEccC-CCEEEEEECCCcEEEEECCCCe
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND---LHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENK 682 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~---~~~~VtsvafSPd-G~~LasGs~DG~I~lwDl~~~~ 682 (755)
.++|+...|.+ +|.++++++.||+|++|+.++.+++.++. ...+|+++-.-|. ...++++...++|+|.++.. +
T Consensus 348 sSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-Q 425 (508)
T KOG0275|consen 348 SSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-Q 425 (508)
T ss_pred cccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-e
Confidence 99999999999 99999999999999999999999886554 3357888888884 47888899999999999864 4
Q ss_pred eeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEE
Q 004404 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCI 749 (755)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~f 749 (755)
.+..+.- -+...+...+...+|.|. ++...+.|+.++.|. .+.+...+.-|+..++.+.-
T Consensus 426 vVrsfsS------GkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~H 487 (508)
T KOG0275|consen 426 VVRSFSS------GKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTH 487 (508)
T ss_pred EEeeecc------CCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeecCceeeeeeccccccccccc
Confidence 4443321 112234556677899998 899999999999998 68899999999888777653
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=7.6e-23 Score=202.26 Aligned_cols=256 Identities=19% Similarity=0.267 Sum_probs=216.6
Q ss_pred eeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccc
Q 004404 317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH 393 (755)
Q Consensus 317 ~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~ 393 (755)
+||.=+||.=+ .+|.||...|.......| .++++-|=|-+ +||..+|..++.+. |..-|++++++.+.
T Consensus 42 mlr~g~tgdwi-----gtfeghkgavw~~~l~~na~~aasaaadftak-vw~a~tgdelhsf~--hkhivk~~af~~ds- 112 (334)
T KOG0278|consen 42 MLRNGDTGDWI-----GTFEGHKGAVWSATLNKNATRAASAAADFTAK-VWDAVTGDELHSFE--HKHIVKAVAFSQDS- 112 (334)
T ss_pred hhccCCCCCcE-----EeeeccCcceeeeecCchhhhhhhhcccchhh-hhhhhhhhhhhhhh--hhheeeeEEecccc-
Confidence 35555566666 789999999998888777 78899999999 99999999887765 34446666665432
Q ss_pred cccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEE
Q 004404 394 KERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS 473 (755)
Q Consensus 394 ~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaT 473 (755)
..+++|..+..+|+|+++..+.. ..++.+|.+.|..+.|....+.|++
T Consensus 113 ----------------------------~~lltgg~ekllrvfdln~p~Ap----p~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 113 ----------------------------NYLLTGGQEKLLRVFDLNRPKAP----PKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred ----------------------------hhhhccchHHHhhhhhccCCCCC----chhhcCCCCcceeEEEeccCceEEe
Confidence 34688899999999999876654 3457899999999999998899999
Q ss_pred EECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceee
Q 004404 474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF 553 (755)
Q Consensus 474 gs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~ 553 (755)
.+.|++||+||..++..+..+.
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~---------------------------------------------------------- 182 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLE---------------------------------------------------------- 182 (334)
T ss_pred eccCCceEEEEeccCcEEEEEe----------------------------------------------------------
Confidence 9999999999998887665541
Q ss_pred ecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEE
Q 004404 554 ALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (755)
Q Consensus 554 ~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVr 633 (755)
....|+++.+++++.+++-...+.|++||..+-..++.+.-...|.+..++| +...|++|+.|..++
T Consensus 183 ------------~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P-~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 183 ------------FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP-KKEFFVAGGEDFKVY 249 (334)
T ss_pred ------------cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccC-CCceEEecCcceEEE
Confidence 1245888899999999999999999999999999999999889999999999 889999999999999
Q ss_pred EEECCCCcEEEe--ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 634 IWSIPERQVVDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 634 IWDl~t~~~v~~--~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
.||..++..+.. ..|.++|.++.|+|+|...++|+.||+|+||.+..++..
T Consensus 250 kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 250 KFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 999999987744 678899999999999999999999999999998766544
No 82
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.9e-22 Score=201.19 Aligned_cols=288 Identities=19% Similarity=0.282 Sum_probs=215.6
Q ss_pred cCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCc
Q 004404 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (755)
Q Consensus 407 ~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~ 486 (755)
.++|..-+.+ +..+.++.+++.|.+.++|.+.++... .++.||.++|++|+|++.+.+++|++.|++-+||...
T Consensus 147 HkDGiW~Vaa-~~tqpi~gtASADhTA~iWs~Esg~CL-----~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 147 HKDGIWHVAA-DSTQPICGTASADHTARIWSLESGACL-----ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred cccceeeehh-hcCCcceeecccccceeEEeeccccce-----eeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 4445554444 344557788999999999999877643 4457999999999999999999999999999999731
Q ss_pred ----CCcee--------eee-----------------------ecccccCccccEEEeecCCCCceeccccCCCceeeec
Q 004404 487 ----ESERK--------GEL-----------------------LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (755)
Q Consensus 487 ----t~~~~--------~~l-----------------------~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~ 531 (755)
..+.. .+. +.....+|...+.+..|...+..+++++.+...
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA---- 296 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA---- 296 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc----
Confidence 11000 000 000112333344444444444444444433332
Q ss_pred ccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCC-cEEEEee-cC
Q 004404 532 RGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HS 607 (755)
Q Consensus 532 ~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~-~~~~~~~-h~ 607 (755)
.+|+. ++.++..+.||..+.+.++-+|. .++++++.|-+.+|||++.. ..+..|+ |.
T Consensus 297 -------------------nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 297 -------------------NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred -------------------eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc
Confidence 34444 67888999999999999999998 66789999999999999853 4556665 99
Q ss_pred CceEEEEEeeCCCcEEEEEECCCcEEEEECCCC-cEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 608 ~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~-~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
+.|+++.|.. +..+++|+.|.+|+|||+++. .++..+....+++.++.+..++.|+.--.+..|+|||+....+...
T Consensus 358 dtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl 435 (481)
T KOG0300|consen 358 DTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL 435 (481)
T ss_pred cceeEEEEec--CCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccC
Confidence 9999999986 577999999999999999875 4567788889999999999889999999999999999998776543
Q ss_pred cccccccccccCCCCCeEEEEEccCCC-eEEEEEECCCcEEEEEC
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSS-SEVLVTSADSRIRVVDG 730 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~-~~L~sgs~Dg~IrVWD~ 730 (755)
. ....++|...|++++|..+.+ .-|++++.|..+.-|..
T Consensus 436 P-----rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 436 P-----RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred C-----cccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence 2 234569999999999975432 14889999999999973
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.4e-21 Score=207.25 Aligned_cols=254 Identities=20% Similarity=0.312 Sum_probs=207.4
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEe
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v 509 (755)
..+|.+|+..+.... +.+.-.+..|.++.|-.||++||.|+..|.|+|+|+.+...+..+ ..|..++...
T Consensus 47 S~rvqly~~~~~~~~-----k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-----~ah~apv~~~ 116 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVR-----KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-----YAHQAPVHVT 116 (487)
T ss_pred ccEEEEEecchhhhh-----hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-----hhccCceeEE
Confidence 456667776644332 223456788999999999999999999999999996654344443 6788889999
Q ss_pred ecCCC-CceeccccCCCceeeecccccccccccccCcccccceeeecCCCce-EEeccCCCCEEEEEecCC--cEEEEEe
Q 004404 510 NGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI-CSFQGHLDDVLDLSWSKS--QHLLSSS 585 (755)
Q Consensus 510 ~~s~d-g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i-~~l~gH~~~V~~L~~spd--~~LaSgs 585 (755)
.|+|. .+++++++.+..+ .+|+++...+ ..+.+|++-|.|.+|+|. ..+++|+
T Consensus 117 ~f~~~d~t~l~s~sDd~v~-----------------------k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGs 173 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVV-----------------------KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGS 173 (487)
T ss_pred EecccCCeEEEecCCCceE-----------------------EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecC
Confidence 99987 5666667666655 5666655544 378999999999999996 5799999
Q ss_pred CCCcEEEEECCCC-cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC-cEE-EeccCCCCEEEEEEccCCC
Q 004404 586 MDKTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVV-DWNDLHEMVTAACYTPDGQ 662 (755)
Q Consensus 586 ~DgtVrLWDl~t~-~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~-~~v-~~~~~~~~VtsvafSPdG~ 662 (755)
.||+||+||++.. ..+..+.|..+|..+.|-| .|.+|++++ ...|+|||+.++ +.+ ....|+..|+|+++..++.
T Consensus 174 YDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 174 YDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST 251 (487)
T ss_pred CCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCc
Confidence 9999999999987 7888889999999999999 889999887 568999999855 444 4445899999999999999
Q ss_pred EEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 663 GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 663 ~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.|++|+-|+.+++||+.+-+.+..+ .-.++|.+++.+|+++ .+++|-.+|.+.+=+
T Consensus 252 rLlS~sLD~~VKVfd~t~~Kvv~s~----------~~~~pvLsiavs~dd~-t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDTTNYKVVHSW----------KYPGPVLSIAVSPDDQ-TVVIGMSNGLVSIRR 307 (487)
T ss_pred eEeecccccceEEEEccceEEEEee----------ecccceeeEEecCCCc-eEEEecccceeeeeh
Confidence 9999999999999999888888765 3468999999999988 799999999887763
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.4e-21 Score=221.08 Aligned_cols=199 Identities=20% Similarity=0.346 Sum_probs=165.2
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
.++.||.+.|..|.||.++ +|+|++.|.|||||++...+++..|
T Consensus 363 ~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F----------------------------------- 406 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF----------------------------------- 406 (712)
T ss_pred hhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-----------------------------------
Confidence 5578999999999999764 8999999999999998655444332
Q ss_pred ecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEeecC
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHS 607 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~h~ 607 (755)
.|..-|+|++|+|- ++|++|+-|+.||||++...+.+.-..-.
T Consensus 407 -----------------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~ 451 (712)
T KOG0283|consen 407 -----------------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR 451 (712)
T ss_pred -----------------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh
Confidence 48889999999993 89999999999999999988887777777
Q ss_pred CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec---cC------CCCEEEEEEccCC-CEEEEEECCCcEEEEE
Q 004404 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN---DL------HEMVTAACYTPDG-QGALVGSYKGSCHLYN 677 (755)
Q Consensus 608 ~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~---~~------~~~VtsvafSPdG-~~LasGs~DG~I~lwD 677 (755)
.-|++++|.| +|++.+.|+.+|.+++|++...+++... .+ +..|+.+.|.|.. ..|++.+.|..|||||
T Consensus 452 ~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 452 DLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYD 530 (712)
T ss_pred hhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEe
Confidence 9999999999 9999999999999999999987765321 11 2379999999844 4688888999999999
Q ss_pred CCCCeeeeccccccccccccCCC--CCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 678 TSENKLQQKSPINLQNKKKRSHQ--RKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~--~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
.++..++..+ +++. ..-....|+.+|+ +|++++.|..|+||+.
T Consensus 531 ~~~~~lv~Kf---------KG~~n~~SQ~~Asfs~Dgk-~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 531 GRDKDLVHKF---------KGFRNTSSQISASFSSDGK-HIVSASEDSWVYIWKN 575 (712)
T ss_pred ccchhhhhhh---------cccccCCcceeeeEccCCC-EEEEeecCceEEEEeC
Confidence 9887777653 2322 2345668999998 8999999999999993
No 85
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=1.8e-21 Score=206.97 Aligned_cols=253 Identities=16% Similarity=0.282 Sum_probs=195.8
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccc-----eeeeeEeecccCCEEEEEEcCCCC-EEEEEECCCcEEEEeCcCCcee
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTA-----LYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERK 491 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~-----~~~~q~l~gH~~~I~sI~fSpdg~-~LaTgs~DGtVrVWdl~t~~~~ 491 (755)
+..+.++++++..+.|.|||.....-.. ...-..|.+|++.=++|+|++... +|++++.|++|.+||+......
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC
Confidence 3445667888999999999976432211 112235789999889999999544 8999999999999998543211
Q ss_pred eeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEE
Q 004404 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571 (755)
Q Consensus 492 ~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~ 571 (755)
.. .-.+...+.+|...|.
T Consensus 214 ~~--------------------------------------------------------------~~~p~~~~~~h~~~Ve 231 (422)
T KOG0264|consen 214 DK--------------------------------------------------------------VVDPKTIFSGHEDVVE 231 (422)
T ss_pred Cc--------------------------------------------------------------cccceEEeecCCccee
Confidence 00 1134566889999999
Q ss_pred EEEecCC--cEEEEEeCCCcEEEEECCC--CcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc--EEE
Q 004404 572 DLSWSKS--QHLLSSSMDKTVRLWHLSS--KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VVD 644 (755)
Q Consensus 572 ~L~~spd--~~LaSgs~DgtVrLWDl~t--~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~--~v~ 644 (755)
+++|++- ..|++++.|+.+.|||+++ .++.+... |.+.|+|++|+|.++.+||+|+.|++|.+||+++.. +..
T Consensus 232 DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~ 311 (422)
T KOG0264|consen 232 DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT 311 (422)
T ss_pred hhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee
Confidence 9999995 7899999999999999994 44544444 999999999999888999999999999999998743 447
Q ss_pred eccCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeecccc---cccc--ccccCCCCCeEEEEEccCCCeEEEE
Q 004404 645 WNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPI---NLQN--KKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 645 ~~~~~~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~i---~~~~--~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
+..|...|..|.|+|+. ..||+++.|+.+.+||+..-...+.... ..+. ..-.||...|..+.|+|..+..|++
T Consensus 312 ~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 312 FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEE
Confidence 77888999999999965 6788889999999999975333321000 0000 1125899999999999999988999
Q ss_pred EECCCcEEEEECCc
Q 004404 719 TSADSRIRVVDGID 732 (755)
Q Consensus 719 gs~Dg~IrVWD~~~ 732 (755)
.+.|+.+.||..-+
T Consensus 392 vaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 392 VAEDNILQIWQMAE 405 (422)
T ss_pred ecCCceEEEeeccc
Confidence 99999999999543
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.7e-21 Score=197.58 Aligned_cols=292 Identities=15% Similarity=0.183 Sum_probs=222.8
Q ss_pred CccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCC------------Ccccc-eeeeeEeecccCCEEEEEEcCCCCEE
Q 004404 405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC------------KDLTA-LYKCQEIQAHNGSIWSIKFSLDGRYL 471 (755)
Q Consensus 405 ~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~------------~~~~~-~~~~q~l~gH~~~I~sI~fSpdg~~L 471 (755)
...+...+.+..+.|+ .++++|+.|..|+++|... ++..+ -..+++|..|.+.|+++.|+|....|
T Consensus 109 t~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred eecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 3355555666555555 4568999999999999862 11111 13456788999999999999999999
Q ss_pred EEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccce
Q 004404 472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET 551 (755)
Q Consensus 472 aTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~ 551 (755)
++|+.|++|+++|+......+.+.. .....++.++.+.|.|.+++.+..-..+..+.........+
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~---~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs----------- 253 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKV---FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS----------- 253 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHH---hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-----------
Confidence 9999999999999976544333211 22356788999999999999886655553332221110000
Q ss_pred eeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee--cC-CceEEEEEeeCCCcEEEEEE
Q 004404 552 VFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HS-DYVTCIQFNPVDDRYFISGS 627 (755)
Q Consensus 552 v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~-~~VtsVafsP~dg~~LaSgS 627 (755)
...-.+|.+.|+++.+++. .+.++++.||.|+|||--.++|+.+++ |. ..|.+..|.. +++++++.+
T Consensus 254 --------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG 324 (430)
T KOG0640|consen 254 --------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSG 324 (430)
T ss_pred --------cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecC
Confidence 0012479999999999998 678999999999999999999999996 54 5799999999 999999999
Q ss_pred CCCcEEEEECCCCcEEEeccCC------CCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCC
Q 004404 628 LDAKVRIWSIPERQVVDWNDLH------EMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (755)
Q Consensus 628 ~DgtVrIWDl~t~~~v~~~~~~------~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (755)
.|..|++|.+.+++++..+... .--+...|.....|++.-. ..+.++-||.++......+.+ +|.
T Consensus 325 ~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl--------gHn 396 (430)
T KOG0640|consen 325 KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL--------GHN 396 (430)
T ss_pred CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc--------CCC
Confidence 9999999999999988655433 2234556777667777644 357799999999887765543 999
Q ss_pred CCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 701 RKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 701 ~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+.+..+.-+|.++ -+++++.|.++|+|-
T Consensus 397 ~a~R~i~HSP~~p-~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 397 GAVRWIVHSPVEP-AFMTCSDDFRARFWY 424 (430)
T ss_pred CCceEEEeCCCCC-ceeeecccceeeeee
Confidence 9999999999998 799999999999995
No 87
>PTZ00421 coronin; Provisional
Probab=99.88 E-value=4.2e-20 Score=210.36 Aligned_cols=213 Identities=19% Similarity=0.275 Sum_probs=165.9
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccc--eeeeeEeecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCCceeeeeecc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTA--LYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEK 497 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~--~~~~q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~~~~~~l~~~ 497 (755)
...+++++.|++|++|++....+.. ......+.+|...|.+|+|+|++ .+|++|+.|++|+|||+.+++
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-------- 159 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-------- 159 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--------
Confidence 3578999999999999987653311 12345688999999999999975 699999999999999986543
Q ss_pred cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC
Q 004404 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp 577 (755)
.+..+.+|...|.+++|+|
T Consensus 160 -------------------------------------------------------------~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 160 -------------------------------------------------------------AVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred -------------------------------------------------------------EEEEEcCCCCceEEEEEEC
Confidence 1234567888999999999
Q ss_pred C-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCc-eEEEEEeeCCCcEEEEEE----CCCcEEEEECCCCc-EEEecc--
Q 004404 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDY-VTCIQFNPVDDRYFISGS----LDAKVRIWSIPERQ-VVDWND-- 647 (755)
Q Consensus 578 d-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~-VtsVafsP~dg~~LaSgS----~DgtVrIWDl~t~~-~v~~~~-- 647 (755)
+ .+|++++.|++|+|||+++++.+..+. |.+. +..+.|.+ ++..|++++ .|++|++||+++.. ++....
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d 257 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD 257 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence 8 679999999999999999999888876 6654 45778888 666776654 47999999998753 333322
Q ss_pred CCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccC
Q 004404 648 LHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (755)
Q Consensus 648 ~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd 711 (755)
....+....|++++++|++|+ .|+.|++||+.++.+...... .+..++.+++|.|.
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~--------~s~~~~~g~~~~pk 314 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY--------SSVEPHKGLCMMPK 314 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec--------cCCCCCcceEeccc
Confidence 234566778999999999887 599999999999887654321 35567888888885
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=4.4e-21 Score=218.98 Aligned_cols=250 Identities=18% Similarity=0.320 Sum_probs=216.5
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
|...|.+..|. ..++++++.|++|++|+..++..+..- ..+|...+..+.+...+.++++++.+..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~----l~GH~g~V~~l~~~~~~~~lvsgS~D~t~------- 273 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTR----LVGHFGGVWGLAFPSGGDKLVSGSTDKTE------- 273 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEee----ccCCCCCceeEEEecCCCEEEEEecCCcE-------
Confidence 56778888888 568999999999999999888776652 37889999999988888888888888777
Q ss_pred cccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEE
Q 004404 535 SINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTC 612 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~Vts 612 (755)
.+|+. ++++++.+.+|...|.++...+ .++++|+.|.+|++|++.++.+++++. |.++|.+
T Consensus 274 ----------------rvWd~~sg~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~ 336 (537)
T KOG0274|consen 274 ----------------RVWDCSTGECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNC 336 (537)
T ss_pred ----------------EeEecCCCcEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEE
Confidence 44544 6789999999999999998764 567789999999999999999999998 9999999
Q ss_pred EEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC-eeeeccccc
Q 004404 613 IQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN-KLQQKSPIN 690 (755)
Q Consensus 613 VafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~-~~~~~~~i~ 690 (755)
+.++ +.++++|+.|++|++||+.+++++ .+.+|...|+++.+.+. ..+++|+.|+.|++||+.+. +++..
T Consensus 337 v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t---- 408 (537)
T KOG0274|consen 337 VQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT---- 408 (537)
T ss_pred EEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh----
Confidence 9994 789999999999999999999988 45667789999988765 89999999999999999998 66554
Q ss_pred cccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeec-CCccEEEEEEE
Q 004404 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKG-ENYVQYMVCIV 750 (755)
Q Consensus 691 ~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~G-H~~~V~sv~fs 750 (755)
+.+|...|..+.+... +|++++.|++|++|| .+++++++.+ |...|..+++.
T Consensus 409 -----l~~h~~~v~~l~~~~~---~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 409 -----LQGHTSLVSSLLLRDN---FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred -----hcCCcccccccccccc---eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence 4488888888777654 899999999999999 6899999999 67889888884
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=6.7e-21 Score=193.25 Aligned_cols=266 Identities=15% Similarity=0.217 Sum_probs=211.2
Q ss_pred cccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecc
Q 004404 454 AHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (755)
Q Consensus 454 gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~ 532 (755)
.-.+.|.+|+||| ...+|+.+|.|++||+|+++... .+.......+..+++.++|+.++..+..+..++.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g---~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~----- 96 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG---QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA----- 96 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCC---cccchhhhccCCCeEEEEEccCCceEEeeccCCce-----
Confidence 4568899999999 45567789999999999997642 12223356788999999999999999999888876
Q ss_pred cccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCCCcEEEEeecCCc
Q 004404 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609 (755)
Q Consensus 533 ~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~ 609 (755)
++|++...++..+..|.++|..+.|-+. ..|++||.|++|+.||++...++.++...+.
T Consensus 97 ------------------k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR 158 (347)
T KOG0647|consen 97 ------------------KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER 158 (347)
T ss_pred ------------------EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce
Confidence 6788877788999999999999999875 4799999999999999999999999999999
Q ss_pred eEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE---EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV---DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 610 VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v---~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
|+++..- ..+++.+..+..|.+|+++.+... ..-..+-.+.+|+..+|.+..+.|+.+|.+-|..+..+.....
T Consensus 159 vYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 159 VYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred eeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 9998874 478899999999999999776533 1223456799999999998899999999999999988755444
Q ss_pred cccccccccc--cCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEE
Q 004404 687 SPINLQNKKK--RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCI 749 (755)
Q Consensus 687 ~~i~~~~~~~--~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~f 749 (755)
+.+......- ...-..|++|+|+|... .|++++.||++.+|| ....|...+.|..+|..-+|
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSF 301 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhccCcCCCccceeEe
Confidence 3322111000 01123688999999876 799999999999999 45566666667776666655
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=5.2e-21 Score=203.27 Aligned_cols=269 Identities=19% Similarity=0.320 Sum_probs=204.5
Q ss_pred EEEEeCCCcEEEEeeCCCCccc------------ceeeeeEe-ecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc
Q 004404 423 VSFHGQERVRVRQYGKSCKDLT------------ALYKCQEI-QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~------------~~~~~q~l-~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~ 489 (755)
..++++.++.|.-|+..++... ...+.+.- ++|...|.+++.++||+|||||+.|..|.||+..+.+
T Consensus 156 ~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e 235 (479)
T KOG0299|consen 156 RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE 235 (479)
T ss_pred ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc
Confidence 4566777777777776655422 11111111 3899999999999999999999999999999999998
Q ss_pred eeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC-CceEEeccCCC
Q 004404 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLD 568 (755)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~-k~i~~l~gH~~ 568 (755)
.+..+ .+|...+..++|.....-+.+++.+..+ .+|.+.. ..+.++.||++
T Consensus 236 hv~~~-----~ghr~~V~~L~fr~gt~~lys~s~Drsv-----------------------kvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 236 HVKVF-----KGHRGAVSSLAFRKGTSELYSASADRSV-----------------------KVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred hhhcc-----cccccceeeeeeecCccceeeeecCCce-----------------------EEEehhHhHHHHHHhCCcc
Confidence 87775 7889999999998887777777777766 3444432 34567889999
Q ss_pred CEEEEEecCCcEEEE-EeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc
Q 004404 569 DVLDLSWSKSQHLLS-SSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647 (755)
Q Consensus 569 ~V~~L~~spd~~LaS-gs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~ 647 (755)
.|.+|....-..+++ |+.|++++||++.....+....+.+.+-|++|- +...|++|+.+|.|.+|++.+.+++.+..
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEee
Confidence 999998876655555 559999999999665555555689999999998 57889999999999999998888764321
Q ss_pred --C-----------CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCe
Q 004404 648 --L-----------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (755)
Q Consensus 648 --~-----------~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~ 714 (755)
| +.+|++++..|...++++|+.+|.|++|-+..+-....+-..+ .-.+.|++++|+++|+
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l------s~~GfVNsl~f~~sgk- 438 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL------SLVGFVNSLAFSNSGK- 438 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeec------ccccEEEEEEEccCCC-
Confidence 1 1289999999999999999999999999999883322211111 3467899999999998
Q ss_pred EEEEE-ECCCcEEEE
Q 004404 715 EVLVT-SADSRIRVV 728 (755)
Q Consensus 715 ~L~sg-s~Dg~IrVW 728 (755)
+|++| +...++-=|
T Consensus 439 ~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 439 RIVAGIGKEHRLGRW 453 (479)
T ss_pred EEEEeccccccccee
Confidence 45554 555555444
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.2e-19 Score=177.10 Aligned_cols=272 Identities=19% Similarity=0.232 Sum_probs=209.5
Q ss_pred cccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCC----------ceeeeeecccccCccccEEEeecCCCCceeccccC
Q 004404 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES----------ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~----------~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~ 523 (755)
....+|.+++|+|.|.+.|.|+...+.+|-....- +....+..+...-|...+.+.+|+|+|.++++++.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 45678999999999999999999999998754221 11112222334567788999999999999999999
Q ss_pred CCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC----c-EEEEEeC-CCcEEEEECCC
Q 004404 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS----Q-HLLSSSM-DKTVRLWHLSS 597 (755)
Q Consensus 524 d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd----~-~LaSgs~-DgtVrLWDl~t 597 (755)
+..+.....+.... ... .+-.+|.-|.+.|.+++|..+ + .|++++. |-.|++-|...
T Consensus 110 dk~ik~l~fn~dt~----------------~~~-g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 110 DKTIKVLPFNADTC----------------NAT-GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred CceEEEEecccccc----------------ccc-CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 98886544332111 111 233567789999999999754 3 4555543 66778888889
Q ss_pred CcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC--------CCEEEEEEccCCCEEEEEE
Q 004404 598 KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--------EMVTAACYTPDGQGALVGS 668 (755)
Q Consensus 598 ~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~--------~~VtsvafSPdG~~LasGs 668 (755)
++.++.+. |++.|.++- +- ++-.|++|+.|.+|++||++-..++...... ..|.+++..|.|++|++|-
T Consensus 173 g~~~~a~sghtghilaly-sw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 173 GQGFHALSGHTGHILALY-SW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred CCcceeecCCcccEEEEE-Ee-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 99998886 999998773 33 6899999999999999999988877654322 4799999999999999999
Q ss_pred CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC-Ccc-----eEEeecCCc
Q 004404 669 YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG-IDL-----VHKFKGENY 742 (755)
Q Consensus 669 ~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~-~~l-----l~~~~GH~~ 742 (755)
.|..+.+||++.++.++.+. .|...|.++.|+|... +|++++.|..|++-|. +++ +.....|..
T Consensus 251 ~dssc~lydirg~r~iq~f~---------phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdla~el~~~vv~ehkd 320 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGRMIQRFH---------PHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD 320 (350)
T ss_pred CCCceEEEEeeCCceeeeeC---------CCccceeEEEeCCCce-EEEEecccceEEEeecccchhhcCceEEEEeccC
Confidence 99999999999999987653 8999999999999775 9999999999999993 332 334456777
Q ss_pred cEEEEEEEEEEe
Q 004404 743 VQYMVCIVLFFF 754 (755)
Q Consensus 743 ~V~sv~fs~F~f 754 (755)
.++.+.+-|--|
T Consensus 321 k~i~~rwh~~d~ 332 (350)
T KOG0641|consen 321 KAIQCRWHPQDF 332 (350)
T ss_pred ceEEEEecCccc
Confidence 777776655433
No 92
>PTZ00420 coronin; Provisional
Probab=99.87 E-value=3.5e-20 Score=212.33 Aligned_cols=213 Identities=16% Similarity=0.311 Sum_probs=157.2
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcc--cc-eeeeeEeecccCCEEEEEEcCCCCE-EEEEECCCcEEEEeCcCCceeeeeec
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDL--TA-LYKCQEIQAHNGSIWSIKFSLDGRY-LASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~--~~-~~~~q~l~gH~~~I~sI~fSpdg~~-LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
..++++|+.|++|++|++..... .. ......+.+|...|.+|+|+|++.+ |+|++.|++|+|||+.+++....
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~--- 163 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ--- 163 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE---
Confidence 35688999999999999875421 11 1123457899999999999999875 57999999999999976542211
Q ss_pred ccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec
Q 004404 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
+. |...|.+++|+
T Consensus 164 ------------------------------------------------------------------i~-~~~~V~Slsws 176 (568)
T PTZ00420 164 ------------------------------------------------------------------IN-MPKKLSSLKWN 176 (568)
T ss_pred ------------------------------------------------------------------Ee-cCCcEEEEEEC
Confidence 11 33568999999
Q ss_pred CC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEE-----EEEeeCCCcEEEEEECCC----cEEEEECCC-CcEEE
Q 004404 577 KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTC-----IQFNPVDDRYFISGSLDA----KVRIWSIPE-RQVVD 644 (755)
Q Consensus 577 pd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~Vts-----VafsP~dg~~LaSgS~Dg----tVrIWDl~t-~~~v~ 644 (755)
|+ .+|++++.|++|+|||+++++.+..+. |.+.+.+ ..|++ ++.+|++++.|+ +|+|||+++ ..++.
T Consensus 177 pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~ 255 (568)
T PTZ00420 177 IKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALV 255 (568)
T ss_pred CCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceE
Confidence 98 667788899999999999999988886 7766543 33457 788899888774 799999985 55555
Q ss_pred eccCCCC---EEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 645 WNDLHEM---VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 645 ~~~~~~~---VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
...+... +......++|.++++|..|+.|++|++..+.+..... ..+..++.+++|.|..
T Consensus 256 ~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~--------~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 256 TMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNE--------YKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecc--------cccCCCccceEEcccc
Confidence 4444432 3333345568999999999999999998775332211 1366788899999963
No 93
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=9.7e-21 Score=201.63 Aligned_cols=301 Identities=18% Similarity=0.238 Sum_probs=218.9
Q ss_pred ccCCCCCc-cccccCCCCCCccccccCCcccc---cceeE--EeeccccccccCccccCCc---------cCCCceeeee
Q 004404 352 EEGNKDSF-DLNNNGSSGGGMKSKKKGSWFKS---IRTVA--SSVTGHKERRSSDERDTSS---------EKGGRRSSSA 416 (755)
Q Consensus 352 ~sgs~D~t-v~~~Wd~~~g~~~~k~k~~~~~~---v~sv~--~s~~g~~~~~~~~~~~~~~---------~~g~~~~vs~ 416 (755)
.+++.|.+ +. +||..+|...-+.|++.... .+.+. +.+.+...+..-..|...+ .+|. ..+.+
T Consensus 11 sssS~d~~~~~-~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~-v~al~ 88 (476)
T KOG0646|consen 11 SSSSFDPINCI-VWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGP-VHALA 88 (476)
T ss_pred eccCCCCccee-EEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccc-eeeee
Confidence 45666766 55 99999998777776552221 11111 2222222233334443322 1222 22233
Q ss_pred ecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeec
Q 004404 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 417 ~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
......+++.|...+.+++|.+.++.+... +.+|-.+|+|+.|+-||.+|+|||.||.|.+|.+..-
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v-----~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l-------- 155 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNV-----LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL-------- 155 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHH-----HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee--------
Confidence 334445678888999999999999887544 4589999999999999999999999999999987321
Q ss_pred ccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec
Q 004404 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
+....+ .+.++++.|..|.-+|+++...
T Consensus 156 ----------------------v~a~~~------------------------------~~~~p~~~f~~HtlsITDl~ig 183 (476)
T KOG0646|consen 156 ----------------------VSADND------------------------------HSVKPLHIFSDHTLSITDLQIG 183 (476)
T ss_pred ----------------------cccccC------------------------------CCccceeeeccCcceeEEEEec
Confidence 000000 0346888999999999999987
Q ss_pred CC---cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc------------
Q 004404 577 KS---QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ------------ 641 (755)
Q Consensus 577 pd---~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~------------ 641 (755)
+. .+|+++|.|.+|++||+..+..+.++.....+++++..| -+..++.|+.+|.|.+.++....
T Consensus 184 ~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~ 262 (476)
T KOG0646|consen 184 SGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH 262 (476)
T ss_pred CCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccc
Confidence 64 789999999999999999999999999999999999999 88999999999999988874322
Q ss_pred -----EEEeccCCC--CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCe
Q 004404 642 -----VVDWNDLHE--MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (755)
Q Consensus 642 -----~v~~~~~~~--~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~ 714 (755)
...+.+|.+ .|++++++-||..|++|+.||.++|||+.+.+++.++. ...++|+.+++.|-.+.
T Consensus 263 ~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~---------~~kgpVtnL~i~~~~~~ 333 (476)
T KOG0646|consen 263 EENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ---------TSKGPVTNLQINPLERG 333 (476)
T ss_pred cccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh---------hhccccceeEeeccccc
Confidence 123445555 89999999999999999999999999999998887653 24578999998665442
Q ss_pred EEEEEECCCcEEEEE
Q 004404 715 EVLVTSADSRIRVVD 729 (755)
Q Consensus 715 ~L~sgs~Dg~IrVWD 729 (755)
.++.-.....+-+|+
T Consensus 334 ~~l~~~~~ps~~~~~ 348 (476)
T KOG0646|consen 334 IILFEHKQPSLPNPH 348 (476)
T ss_pred eecccccCccCCchH
Confidence 333333334445555
No 94
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=4.9e-21 Score=211.60 Aligned_cols=278 Identities=21% Similarity=0.321 Sum_probs=213.0
Q ss_pred HhcCCcHHHHHHHhhcc--cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCc
Q 004404 334 MCVGHSPIVQELMRRQN--VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGR 411 (755)
Q Consensus 334 ~~~GHs~~V~~l~~~~~--~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~ 411 (755)
.+.||.+-|+.+++-+. +.++|+|+|++ +|.-..++ |+... .+-+++.-.
T Consensus 9 ~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~-vw~~~~~~--------~l~~~-----~~~~~~g~i-------------- 60 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGVCIISGSRDGTVK-VWAKKGKQ--------YLETH-----AFEGPKGFI-------------- 60 (745)
T ss_pred EeccCccchheeEecCCeEEeecCCCCcee-eeeccCcc--------cccce-----ecccCccee--------------
Confidence 35899999999888777 89999999999 99663332 22210 011111000
Q ss_pred eeeeeecCCC-cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCce
Q 004404 412 RSSSATDDSQ-DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490 (755)
Q Consensus 412 ~~vs~~~ds~-~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~ 490 (755)
...-+..... -.++.|..|..|.+|.....+ +...|.+|+..|.|+....++. |+|||.|.+++||.....
T Consensus 61 ~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-----P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l-- 132 (745)
T KOG0301|consen 61 ANSICYAESDKGRLVVGGMDTTIIVFKLSQAE-----PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL-- 132 (745)
T ss_pred eccceeccccCcceEeecccceEEEEecCCCC-----chhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--
Confidence 0000111111 236889999999999887444 4456789999999999888887 999999999999987433
Q ss_pred eeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCE
Q 004404 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570 (755)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V 570 (755)
... ..+|...++.+..-|+. .+++++.+..+ ++|.. ++.+.+|.||.+-|
T Consensus 133 ~~~-----l~gH~asVWAv~~l~e~-~~vTgsaDKtI-----------------------klWk~-~~~l~tf~gHtD~V 182 (745)
T KOG0301|consen 133 VYS-----LQGHTASVWAVASLPEN-TYVTGSADKTI-----------------------KLWKG-GTLLKTFSGHTDCV 182 (745)
T ss_pred hcc-----cCCcchheeeeeecCCC-cEEeccCccee-----------------------eeccC-Cchhhhhccchhhe
Confidence 222 37899999999999988 56677677776 34443 67788999999999
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC
Q 004404 571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (755)
Q Consensus 571 ~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~-~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~ 649 (755)
..|++-++..|++++.||.|++|++ +++++..+ +|+..|+++...+ ++..++++++|++++||+.. .+.+.+.++
T Consensus 183 RgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP 258 (745)
T KOG0301|consen 183 RGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLP 258 (745)
T ss_pred eeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEecC
Confidence 9999999999999999999999999 55555555 6999999999776 78899999999999999976 677777777
Q ss_pred C-CEEEEEEccCCCEEEEEECCCcEEEEECCCCe
Q 004404 650 E-MVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (755)
Q Consensus 650 ~-~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~ 682 (755)
. .|+++.+-++|. |++|+.||.||||.....+
T Consensus 259 ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 259 TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred ccceEEEEEeeCCC-EEEeccCceEEEEEecccc
Confidence 6 899999999885 6777789999999887443
No 95
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=6.7e-21 Score=193.56 Aligned_cols=285 Identities=15% Similarity=0.271 Sum_probs=223.6
Q ss_pred eeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCce
Q 004404 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (755)
Q Consensus 448 ~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i 527 (755)
..+++.||++.||.++.......+.|++.|.+.+||.++++.++.++ .+|...+.++.|.+.+.++++++.+...
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-----~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-----TGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-----cccccceeeEEeccccceEEEccCCcch
Confidence 34667899999999999887779999999999999999999998886 7999999999999999999999888765
Q ss_pred eeecccccc--cc----cccccCccc--ccceeee----------cCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCC
Q 004404 528 EKKRRGRSI--NR----KSLSLDHMV--VPETVFA----------LSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK 588 (755)
Q Consensus 528 ~~~~~~~~~--~~----~s~s~d~~~--~~~~v~~----------~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~Dg 588 (755)
.+|...-.. .. ...+..... ..+..-+ .-..|+..|.+|.+.|.+..|... +.+++++.|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 555422111 10 000000000 0000000 012467889999999999999877 7899999999
Q ss_pred cEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc--EEEeccCCCCEEEEEEccCCCEEE
Q 004404 589 TVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VVDWNDLHEMVTAACYTPDGQGAL 665 (755)
Q Consensus 589 tVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~--~v~~~~~~~~VtsvafSPdG~~La 665 (755)
+..|||+++++.+..+. |....+.++-+| ..+++++.+.|-+.++||.+..- +..+.+|...|+++.|..+. .++
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-cee
Confidence 99999999999999996 999999999999 89999999999999999998532 23566788999999999865 789
Q ss_pred EEECCCcEEEEECCCCeeee-ccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE-CCcceEEe-----e
Q 004404 666 VGSYKGSCHLYNTSENKLQQ-KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-GIDLVHKF-----K 738 (755)
Q Consensus 666 sGs~DG~I~lwDl~~~~~~~-~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD-~~~ll~~~-----~ 738 (755)
+|+.|.+|++||+++..... ++ -...+++.++.+..++ .|+.--++..||+|| .+..+.++ +
T Consensus 373 SgSDDrTvKvWdLrNMRsplATI----------RtdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATI----------RTDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred ecCCCceEEEeeeccccCcceee----------ecCCccceeEeecCCc-eEEeccCCceEEEEecCCCccccCCccccc
Confidence 99999999999999865432 21 2457788999998776 677778888999999 45555544 4
Q ss_pred cCCccEEEEEEE
Q 004404 739 GENYVQYMVCIV 750 (755)
Q Consensus 739 GH~~~V~sv~fs 750 (755)
||+..|.+.++.
T Consensus 442 gHrRMV~c~AW~ 453 (481)
T KOG0300|consen 442 GHRRMVTCCAWL 453 (481)
T ss_pred ccceeeeeeecc
Confidence 898888888764
No 96
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=8.8e-21 Score=189.02 Aligned_cols=223 Identities=21% Similarity=0.339 Sum_probs=194.6
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
+++++|...|.+|+|+-+|..|++|+.|+++++|+++......+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~------------------------------------ 57 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE------------------------------------ 57 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh------------------------------------
Confidence 56789999999999999999999999999999999854421111
Q ss_pred ecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEeecC
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHS 607 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~h~ 607 (755)
..+.+|.+.|-.++|+|. ..|++++.|++|++||++.+++.......
T Consensus 58 -------------------------------~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~ 106 (313)
T KOG1407|consen 58 -------------------------------LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK 106 (313)
T ss_pred -------------------------------hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc
Confidence 134689999999999986 78999999999999999999999999866
Q ss_pred CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecc
Q 004404 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 608 ~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~ 687 (755)
..=.-+.|+| ++.+++.+..|..|.+.|.++.+.+........+.-++|+-++.+++.....|+|.|......+.+..
T Consensus 107 ~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~s- 184 (313)
T KOG1407|consen 107 GENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQS- 184 (313)
T ss_pred CcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccc-
Confidence 6667789999 99999999999999999999999988888888899999998888888888889999998887666654
Q ss_pred ccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECCcc--eEEeecCCccEEEEEEE
Q 004404 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL--VHKFKGENYVQYMVCIV 750 (755)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~~l--l~~~~GH~~~V~sv~fs 750 (755)
++.|.....+|.|.|+|+ +|++|+.|..+.+||..++ +..|.-+.-+|..++|+
T Consensus 185 --------i~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 185 --------IKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred --------cccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence 348999999999999998 8999999999999997664 56788888889988885
No 97
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.8e-20 Score=188.77 Aligned_cols=264 Identities=22% Similarity=0.288 Sum_probs=206.6
Q ss_pred EEEeCCCcEEEEeeCCCCc-------ccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeec
Q 004404 424 SFHGQERVRVRQYGKSCKD-------LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~~~-------~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
++.|++...|.-+++.... ...+.+...+++|.++|++++.+ +.|+||||.|-+|+|||+........+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-- 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-- 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce--
Confidence 4566666666666543211 11233344578999999999986 899999999999999999888877776
Q ss_pred ccccCccccEEEeecCCCCc--eeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEE
Q 004404 497 KQEDGHLNMLLLANGSPEPT--SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~dg~--~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~ 574 (755)
..|...+.++.|.+... .|.++..++.+.+++.+ ....+..+++|.+.|+.|+
T Consensus 80 ---l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~----------------------~W~~~~slK~H~~~Vt~ls 134 (362)
T KOG0294|consen 80 ---LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG----------------------SWELLKSLKAHKGQVTDLS 134 (362)
T ss_pred ---eccccceEEEEecCCcchhheeeecCCCcEEEEEcC----------------------CeEEeeeecccccccceeE
Confidence 34577888888888765 67777788887544333 3467889999999999999
Q ss_pred ecCCcE-EEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEE
Q 004404 575 WSKSQH-LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVT 653 (755)
Q Consensus 575 ~spd~~-LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~Vt 653 (755)
.+|.+. -++.+.|+.+++|++-.|+.-..+......+.|.|+| .|.+|+.+..+ .|-||.+.+..+......+..+.
T Consensus 135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l 212 (362)
T KOG0294|consen 135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNASVFREIENPKRIL 212 (362)
T ss_pred ecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHhHhhhhhccccce
Confidence 999955 5588999999999999998777776555556699999 88888877754 68899998887776666666677
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEE--ccCCCeEEEEEECCCcEEEEE
Q 004404 654 AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF--APGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 654 svafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f--sPdg~~~L~sgs~Dg~IrVWD 729 (755)
++.|- ++..|++|..|+.|.+||..+...... +.+|..+|-++.+ .|++ .+|+++|.||.|+|||
T Consensus 213 ~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~---------~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 213 CATFL-DGSELLVGGDNEWISLKDTDSDTPLTE---------FLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWD 279 (362)
T ss_pred eeeec-CCceEEEecCCceEEEeccCCCcccee---------eecchhheeeeEEEecCCc-eEEEEeccCceEEEEE
Confidence 77775 466999999999999999998655544 3499999999985 3445 4899999999999999
No 98
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=5.6e-21 Score=203.19 Aligned_cols=233 Identities=19% Similarity=0.300 Sum_probs=187.0
Q ss_pred ecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeec
Q 004404 453 QAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (755)
Q Consensus 453 ~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~ 531 (755)
-.|.+.|+.+.+-|.. ..+||.+..+.|.|||..+....... .+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-------------------------~~---------- 165 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-------------------------SG---------- 165 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-------------------------cc----------
Confidence 3599999999999955 57788888999999998543211110 00
Q ss_pred ccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCc-------EEE
Q 004404 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT-------CLK 602 (755)
Q Consensus 532 ~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~-------~~~ 602 (755)
.-.|-..+.||.++-++|+|++. ++|++++.|++|++||+.... +..
T Consensus 166 ------------------------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~ 221 (422)
T KOG0264|consen 166 ------------------------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKT 221 (422)
T ss_pred ------------------------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceE
Confidence 11345567899998899999996 899999999999999997532 233
Q ss_pred Eee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC--CcEE-EeccCCCCEEEEEEcc-CCCEEEEEECCCcEEEEE
Q 004404 603 IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE--RQVV-DWNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYN 677 (755)
Q Consensus 603 ~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t--~~~v-~~~~~~~~VtsvafSP-dG~~LasGs~DG~I~lwD 677 (755)
.+. |.+.|..++|+|.+..+|++++.|+.+.|||+++ .++. ....|...|.+++|+| ++..||+|+.|++|+|||
T Consensus 222 ~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwD 301 (422)
T KOG0264|consen 222 IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWD 301 (422)
T ss_pred EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEee
Confidence 343 9999999999998889999999999999999995 3333 4456778999999999 557788899999999999
Q ss_pred CCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC----------------CcceEEeecCC
Q 004404 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG----------------IDLVHKFKGEN 741 (755)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~----------------~~ll~~~~GH~ 741 (755)
+++..... ..+.+|...|..|.|+|+..+.|++++.|+++.|||. -+++-...||+
T Consensus 302 lRnL~~~l--------h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~ 373 (422)
T KOG0264|consen 302 LRNLNKPL--------HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT 373 (422)
T ss_pred chhcccCc--------eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc
Confidence 99866522 3356999999999999999989999999999999992 13567778999
Q ss_pred ccEEEEEEEEE
Q 004404 742 YVQYMVCIVLF 752 (755)
Q Consensus 742 ~~V~sv~fs~F 752 (755)
..|...++.|+
T Consensus 374 ~kV~DfsWnp~ 384 (422)
T KOG0264|consen 374 AKVSDFSWNPN 384 (422)
T ss_pred cccccccCCCC
Confidence 99888877653
No 99
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=1.3e-20 Score=217.97 Aligned_cols=283 Identities=23% Similarity=0.277 Sum_probs=211.3
Q ss_pred cccCCEEEEEEcCCCCEEEEEE--CCCcEEEEeCcCCc----eeee-e--ecccccCccccEEEeecCCCCceeccccCC
Q 004404 454 AHNGSIWSIKFSLDGRYLASAG--EDCVIHVWQVVESE----RKGE-L--LEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTgs--~DGtVrVWdl~t~~----~~~~-l--~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d 524 (755)
.++..|.+|..+|||..+|||| .||.++||+.+.-- ...+ + .......|...+.++.|++||.+++.|+.+
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3456799999999999999999 89999999874321 1111 1 111246788899999999999999999999
Q ss_pred CceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEE
Q 004404 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI 603 (755)
Q Consensus 525 ~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~ 603 (755)
..+.+|.... ........... ........+.+..+.+|..+|.+++|+|+ .+|++++.|++|.||+..+.+++.+
T Consensus 91 ~~v~iW~~~~-~~~~~~fgs~g---~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 91 RLVMIWERAE-IGSGTVFGSTG---GAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ceEEEeeecc-cCCcccccccc---cccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 9988887764 21111100000 00111234678899999999999999998 7899999999999999999999999
Q ss_pred ee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC-------CCCEEEEEEccCCCEEEEEEC----CC
Q 004404 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-------HEMVTAACYTPDGQGALVGSY----KG 671 (755)
Q Consensus 604 ~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~-------~~~VtsvafSPdG~~LasGs~----DG 671 (755)
+. |.+.|..+.|.| -|+||++-+.|++|+||.+.+..+...+.. ...+..+.|+|||++|++... ..
T Consensus 167 l~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~ 245 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS 245 (942)
T ss_pred eecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence 86 999999999999 899999999999999999887665544322 246889999999999999532 23
Q ss_pred cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccC--------CC--------eEEEEEECCCcEEEEECC---c
Q 004404 672 SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG--------SS--------SEVLVTSADSRIRVVDGI---D 732 (755)
Q Consensus 672 ~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd--------g~--------~~L~sgs~Dg~IrVWD~~---~ 732 (755)
++.|.+-.+-+.- +.+-+|.+++..+.|+|. |. ..+++|+.|++|-||.+. .
T Consensus 246 ~~~IieR~tWk~~---------~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 246 TIAIIERGTWKVD---------KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred eeEEEecCCceee---------eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 4666655433322 234599999999999982 11 157888999999999952 3
Q ss_pred ceEEeecCCccEEEEEEE
Q 004404 733 LVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 733 ll~~~~GH~~~V~sv~fs 750 (755)
++-.+.-+...|..++++
T Consensus 317 l~vi~~lf~~SI~DmsWs 334 (942)
T KOG0973|consen 317 LFVIHNLFNKSIVDMSWS 334 (942)
T ss_pred hhhhhhhhcCceeeeeEc
Confidence 333334455668888776
No 100
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=3.8e-20 Score=195.15 Aligned_cols=268 Identities=18% Similarity=0.243 Sum_probs=215.5
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
.....+|..|..+-++|.....+. +.|+||...|+.+.|+|+...+++++.|..|+||.+........ ..
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l-----~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~-----~~ 300 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQIL-----ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS-----SR 300 (506)
T ss_pred CCcceecCCCCceEEEecchhhhh-----hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc-----cc
Confidence 467789999999999998866654 44679999999999999999999999999999999876653333 35
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEecc--CCCCEEEEEecCC
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG--HLDDVLDLSWSKS 578 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~g--H~~~V~~L~~spd 578 (755)
.|..++..+...|.+.++++++.++++.+.... ++..+..... ..-.+++.+|+||
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~----------------------~g~~lt~vs~~~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS----------------------SGSQLTVVSDETSDVEYTSAAFHPD 358 (506)
T ss_pred cccccceeeeeccCCcEEEEecCCceEEEEEcc----------------------CCcEEEEEeeccccceeEEeeEcCC
Confidence 677889999999999999999999887543322 2222222222 2235899999999
Q ss_pred cE-EEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCC--CEEE
Q 004404 579 QH-LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE--MVTA 654 (755)
Q Consensus 579 ~~-LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~--~Vts 654 (755)
+. |.+|..|+.|++||+..+..+..|. |.++|..|+|+. +|.+|++++.|+.|++||++..+....+.... .+.+
T Consensus 359 gLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNS 437 (506)
T ss_pred ceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeecccccccee
Confidence 65 6789999999999999999888886 999999999999 99999999999999999999877665554443 6999
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 655 vafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+.|.+.|++|++++.+=.|++++-.+...... ..+..|.+..+++.|....+ +++++|.|..++|+-
T Consensus 438 ~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~-------~~~~~~sg~st~v~Fg~~aq-~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 438 LSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI-------KELADHSGLSTGVRFGEHAQ-YLASTSMDAILRLYA 504 (506)
T ss_pred EEEcCCCCeEEeecceeEEEEEecccccceee-------ehhhhcccccceeeecccce-EEeeccchhheEEee
Confidence 99999999999998877777776544433222 12336778899999998887 899999999988874
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=8.1e-19 Score=185.92 Aligned_cols=280 Identities=14% Similarity=0.175 Sum_probs=196.1
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEE-EEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~L-aTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
.+++++..++.|++|+..+++. .+.+..|. .+.+++|+|++++| ++++.++.|++||+.+++....+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~-----~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---- 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEV-----TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS---- 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCce-----EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC----
Confidence 3567788999999999876553 23344454 46789999999976 5677899999999988776554421
Q ss_pred CccccEEEeecCCCCceeccc-cCCCceeeecccccccccccccCcccccceeeecCC-CceEEeccCCCCEEEEEecCC
Q 004404 501 GHLNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS 578 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~-s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~-k~i~~l~gH~~~V~~L~~spd 578 (755)
+.. ...+.+++++..++.. ..++.+ .+|++.. +.+..+.. ...+.+++|+|+
T Consensus 72 -~~~-~~~~~~~~~g~~l~~~~~~~~~l-----------------------~~~d~~~~~~~~~~~~-~~~~~~~~~~~d 125 (300)
T TIGR03866 72 -GPD-PELFALHPNGKILYIANEDDNLV-----------------------TVIDIETRKVLAEIPV-GVEPEGMAVSPD 125 (300)
T ss_pred -CCC-ccEEEECCCCCEEEEEcCCCCeE-----------------------EEEECCCCeEEeEeeC-CCCcceEEECCC
Confidence 111 2356788887765443 333433 2333332 33344432 234688999998
Q ss_pred -cEEEEEeCCC-cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEE-EEECCCcEEEEECCCCcEEEeccCC------
Q 004404 579 -QHLLSSSMDK-TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLDAKVRIWSIPERQVVDWNDLH------ 649 (755)
Q Consensus 579 -~~LaSgs~Dg-tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~La-SgS~DgtVrIWDl~t~~~v~~~~~~------ 649 (755)
..++++..++ .+.+||..+++.+..+.....+.+++|+| ++.+|+ ++..++.|++||+.+++.+......
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 204 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHP 204 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccc
Confidence 5666776664 57788998888776665555678899999 888775 4456999999999998765433211
Q ss_pred --CCEEEEEEccCCCEEEEE-ECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE-ECCCcE
Q 004404 650 --EMVTAACYTPDGQGALVG-SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRI 725 (755)
Q Consensus 650 --~~VtsvafSPdG~~LasG-s~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg-s~Dg~I 725 (755)
.....++|+|++++++++ ..++.+.+||+.+++..... .+...+.++.|+|+++ +|+++ +.++.|
T Consensus 205 ~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----------~~~~~~~~~~~~~~g~-~l~~~~~~~~~i 273 (300)
T TIGR03866 205 EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL----------LVGQRVWQLAFTPDEK-YLLTTNGVSNDV 273 (300)
T ss_pred ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE----------EeCCCcceEEECCCCC-EEEEEcCCCCeE
Confidence 134578999999986664 45678999999887765432 2334688999999998 66665 569999
Q ss_pred EEEE--CCcceEEeecCCccEEEEEEE
Q 004404 726 RVVD--GIDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 726 rVWD--~~~ll~~~~GH~~~V~sv~fs 750 (755)
+||| .++++.+++.. ...+.++|.
T Consensus 274 ~v~d~~~~~~~~~~~~~-~~~~~~~~~ 299 (300)
T TIGR03866 274 SVIDVAALKVIKSIKVG-RLPWGVVVR 299 (300)
T ss_pred EEEECCCCcEEEEEEcc-cccceeEeC
Confidence 9999 57888888865 555887765
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=4.4e-20 Score=207.54 Aligned_cols=383 Identities=16% Similarity=0.157 Sum_probs=282.1
Q ss_pred eeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccc
Q 004404 317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH 393 (755)
Q Consensus 317 ~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~ 393 (755)
.||.+.|++.+ -+|.++-..|+.+..+|- ++-|-.+++|. +.+...++.+...+.-|
T Consensus 185 ql~Nvrt~K~v-----~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi-ifNlK~dkil~sFk~d~-------------- 244 (910)
T KOG1539|consen 185 QLWNVRTGKVV-----YTFQEFFSRITAIEQSPALDVVAIGLENGTVI-IFNLKFDKILMSFKQDW-------------- 244 (910)
T ss_pred EEEEeccCcEE-----EEecccccceeEeccCCcceEEEEeccCceEE-EEEcccCcEEEEEEccc--------------
Confidence 48999999999 667777788998888886 77788888888 67676665544444111
Q ss_pred cccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEE
Q 004404 394 KERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS 473 (755)
Q Consensus 394 ~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaT 473 (755)
|.....+...|+..++++|...|.+-+||+..+.+.... ..+|.++|....|.|....|+|
T Consensus 245 ---------------g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~----~nah~~sv~~~~fl~~epVl~t 305 (910)
T KOG1539|consen 245 ---------------GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT----RNAHYGSVTGATFLPGEPVLVT 305 (910)
T ss_pred ---------------cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee----eccccCCcccceecCCCceEee
Confidence 112334445667778899999999999999877665433 3589999999999999999999
Q ss_pred EECCCcEEEEeCcCCceeeeeecccccCccccEEEeecC-CCCceeccccCCCceeeecccc-----------------c
Q 004404 474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS-PEPTSLSPKHLDNHLEKKRRGR-----------------S 535 (755)
Q Consensus 474 gs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s-~dg~~l~~~s~d~~i~~~~~~~-----------------~ 535 (755)
++.|..+++|=..++.....++. ...||..+-.++.+. ..+..+.....+..+....... .
T Consensus 306 a~~DnSlk~~vfD~~dg~pR~LR-~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk 384 (910)
T KOG1539|consen 306 AGADNSLKVWVFDSGDGVPRLLR-SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK 384 (910)
T ss_pred ccCCCceeEEEeeCCCCcchhee-eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence 99999999998776654433322 246777777777766 4566666665555322111000 0
Q ss_pred cccc-------------ccccCcccc------------cceeeecCCCce--EEe-----ccCCCCEEEEEecCC-cEEE
Q 004404 536 INRK-------------SLSLDHMVV------------PETVFALSDKPI--CSF-----QGHLDDVLDLSWSKS-QHLL 582 (755)
Q Consensus 536 ~~~~-------------s~s~d~~~~------------~~~v~~~s~k~i--~~l-----~gH~~~V~~L~~spd-~~La 582 (755)
.+.. ++....... ....|....+.+ +.+ +.....+++++.++. +..+
T Consensus 385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~ 464 (910)
T KOG1539|consen 385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVF 464 (910)
T ss_pred ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEE
Confidence 0000 000000000 013344443333 111 122357888999887 6677
Q ss_pred EEeCCCcEEEEECCCCcEEEEe----ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEc
Q 004404 583 SSSMDKTVRLWHLSSKTCLKIF----SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYT 658 (755)
Q Consensus 583 Sgs~DgtVrLWDl~t~~~~~~~----~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafS 658 (755)
.|+..|+|-+|++..|-....| .|..+|+.++... .++.+++++.+|.+++||..++.++........++.+.++
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~h 543 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYH 543 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeee
Confidence 8888999999999999999888 3999999999987 7889999999999999999999988888888899999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEE
Q 004404 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHK 736 (755)
Q Consensus 659 PdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~ 736 (755)
.....++++..|-.|+++|+.+.+....+ .+|...|+++.|+|+|+ +|++++.|++||+|| ++.++--
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f---------~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVTRKVVREF---------WGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchhhhhhHHh---------hccccceeeeEeCCCCc-EEEEeecCCcEEEEeccCcceeee
Confidence 99999999999999999999988877654 49999999999999998 899999999999999 5666654
Q ss_pred eecCCccEEEEEEEE
Q 004404 737 FKGENYVQYMVCIVL 751 (755)
Q Consensus 737 ~~GH~~~V~sv~fs~ 751 (755)
+. -...+.++.|+|
T Consensus 614 ~~-vd~~~~sls~SP 627 (910)
T KOG1539|consen 614 LL-VDSPCTSLSFSP 627 (910)
T ss_pred Ee-cCCcceeeEECC
Confidence 43 445566666655
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.8e-21 Score=213.57 Aligned_cols=180 Identities=22% Similarity=0.374 Sum_probs=157.2
Q ss_pred eEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCC--cEEEEee-cCCceEEEEE-eeCCCcEEEEEECCCcEEE
Q 004404 560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYVTCIQF-NPVDDRYFISGSLDAKVRI 634 (755)
Q Consensus 560 i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~--~~~~~~~-h~~~VtsVaf-sP~dg~~LaSgS~DgtVrI 634 (755)
+..++.|.+.|+++....+ ..|+++|.|-+|++|+...+ -|+.++. |.++|.|+++ -+ +..++++|+.|+.|.|
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEEE
Confidence 4456789999999998877 58999999999999999887 6777776 9999999999 56 8899999999999999
Q ss_pred EECCCCcE--E---------Eec-cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCC
Q 004404 635 WSIPERQV--V---------DWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (755)
Q Consensus 635 WDl~t~~~--v---------~~~-~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (755)
||+.++.. + .+. ++...|++++..+.|..|++|+..+.+++||.++++.+.. +++|...
T Consensus 145 WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---------LrGHTdN 215 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---------LRGHTDN 215 (735)
T ss_pred EEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee---------eeccccc
Confidence 99997722 1 122 4567899999999999999999999999999999887754 4599999
Q ss_pred eEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEeecCCccEEEEEEE
Q 004404 703 ITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 703 Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~~GH~~~V~sv~fs 750 (755)
|..+..+++|. .++++|.||+|++||. ..++++|..|...|+++...
T Consensus 216 Vr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~ 264 (735)
T KOG0308|consen 216 VRVLLVNDDGT-RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSS 264 (735)
T ss_pred eEEEEEcCCCC-eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeC
Confidence 99999999997 8999999999999994 67999999999999988654
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.3e-20 Score=188.24 Aligned_cols=303 Identities=17% Similarity=0.214 Sum_probs=202.1
Q ss_pred EEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeee--eecccccCccccEEEe
Q 004404 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE--LLEKQEDGHLNMLLLA 509 (755)
Q Consensus 432 ~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~--l~~~~~~~~~~~v~~v 509 (755)
+++.|+.+...+........|++|.+.|++|+|+.||++|||++.|++|+||++...+.... +....+.+ .-..+
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V 138 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRV 138 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEE
Confidence 35667777776666666678899999999999999999999999999999999976432211 11111122 33456
Q ss_pred ecCCCCceecc-ccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCC
Q 004404 510 NGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD 587 (755)
Q Consensus 510 ~~s~dg~~l~~-~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~D 587 (755)
.|.||-..++. ...+..+..+...+.. ++... .-......+.--+.|...|..+-...+ .+|++++.|
T Consensus 139 ~FapDc~s~vv~~~~g~~l~vyk~~K~~-------dG~~~---~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d 208 (420)
T KOG2096|consen 139 VFAPDCKSVVVSVKRGNKLCVYKLVKKT-------DGSGS---HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD 208 (420)
T ss_pred EECCCcceEEEEEccCCEEEEEEeeecc-------cCCCC---cccccccccccchhcccceEEEeecCCceEEEEecCC
Confidence 77887554433 2233333222222111 00000 000000111122346667777766655 789999999
Q ss_pred CcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEEC---CCCc------EEEeccCCCCEEEEEE
Q 004404 588 KTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI---PERQ------VVDWNDLHEMVTAACY 657 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl---~t~~------~v~~~~~~~~Vtsvaf 657 (755)
.+|.||++. |+.+..+. ....-+..+.+| +|+++++++..--|++|.+ +.+. ...+.+|+..|.+++|
T Consensus 209 t~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF 286 (420)
T KOG2096|consen 209 TKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF 286 (420)
T ss_pred CcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee
Confidence 999999999 88888886 455566778999 9999999999999999986 2332 3366788899999999
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCeeeecccccccc--ccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--Ccc
Q 004404 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQN--KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDL 733 (755)
Q Consensus 658 SPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~--~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~l 733 (755)
+++...+++.+.||+++|||+.-......-+..+.. ..+......-..+..+|.|+ +++.+....|++|.+ ++.
T Consensus 287 sn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~--~lA~s~gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 287 SNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD--SLAVSFGSDLKVFASEDGKD 364 (420)
T ss_pred CCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc--EEEeecCCceEEEEcccCcc
Confidence 999999999999999999998643332221111111 11112233445899999996 555666678999983 333
Q ss_pred eEE-eecCCccEEEEEEEE
Q 004404 734 VHK-FKGENYVQYMVCIVL 751 (755)
Q Consensus 734 l~~-~~GH~~~V~sv~fs~ 751 (755)
+.. -+.|...|.+++|.+
T Consensus 365 ~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 365 YPELEDIHSTTISSISYSS 383 (420)
T ss_pred chhHHHhhcCceeeEEecC
Confidence 333 346888899999987
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=8.6e-20 Score=211.26 Aligned_cols=274 Identities=20% Similarity=0.275 Sum_probs=211.1
Q ss_pred EEEeC--CCcEEEEeeCCCCc----ccce---eeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc-----
Q 004404 424 SFHGQ--ERVRVRQYGKSCKD----LTAL---YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE----- 489 (755)
Q Consensus 424 l~sg~--~dg~Vriwd~~~~~----~~~~---~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~----- 489 (755)
+++|. .|+.+++|+...-- .... ..+-+...|.+.|+|+.|+|||+|||+||.|+.|.||......
T Consensus 28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~f 107 (942)
T KOG0973|consen 28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVF 107 (942)
T ss_pred EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccc
Confidence 45556 67778899865311 1111 1123456799999999999999999999999999999987310
Q ss_pred ------ee-eee-ecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceE
Q 004404 490 ------RK-GEL-LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC 561 (755)
Q Consensus 490 ------~~-~~l-~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~ 561 (755)
.. ..+ ......+|...+..+.|+|++.++++.+.+..+.++... +.+.+.
T Consensus 108 gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~----------------------tF~~~~ 165 (942)
T KOG0973|consen 108 GSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK----------------------TFELLK 165 (942)
T ss_pred cccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc----------------------cceeee
Confidence 00 000 011135688899999999999999999988887433221 346788
Q ss_pred EeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-------cCCceEEEEEeeCCCcEEEEEEC----C
Q 004404 562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-------HSDYVTCIQFNPVDDRYFISGSL----D 629 (755)
Q Consensus 562 ~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-------h~~~VtsVafsP~dg~~LaSgS~----D 629 (755)
.+.+|.+.|..+.|.|- ++|++-+.|++|++|++....+.+.+. ....+..+.|+| ||.+|++... -
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGK 244 (942)
T ss_pred eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecchhhccCCc
Confidence 89999999999999997 789999999999999988776666663 345789999999 9999998643 3
Q ss_pred CcEEEEECCCCcE-EEeccCCCCEEEEEEccC-----CC------------EEEEEECCCcEEEEECCCCeeeecccccc
Q 004404 630 AKVRIWSIPERQV-VDWNDLHEMVTAACYTPD-----GQ------------GALVGSYKGSCHLYNTSENKLQQKSPINL 691 (755)
Q Consensus 630 gtVrIWDl~t~~~-v~~~~~~~~VtsvafSPd-----G~------------~LasGs~DG~I~lwDl~~~~~~~~~~i~~ 691 (755)
.++.|.+..+.+. ..+.+|+.++..+.|+|. .+ .+|+|+.|++|-||.....+++....
T Consensus 245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~--- 321 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH--- 321 (942)
T ss_pred ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh---
Confidence 4688888877774 478899999999999981 12 57789999999999997766665432
Q ss_pred ccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 692 ~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.--...|.+++|+|||- .|+++|.||+|.+..
T Consensus 322 -----~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 322 -----NLFNKSIVDMSWSPDGF-SLFACSLDGTVALIH 353 (942)
T ss_pred -----hhhcCceeeeeEcCCCC-eEEEEecCCeEEEEE
Confidence 12357899999999997 799999999999987
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=2.4e-21 Score=200.32 Aligned_cols=239 Identities=14% Similarity=0.262 Sum_probs=193.4
Q ss_pred eEeecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 450 QEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
..|.||.+.|.|++=+|.. ..+|||+.||.|+|||+.+.++...+ ..|.+.+..+.... ..+++...+..+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-----~AH~G~V~Gi~v~~--~~~~tvgdDKtv- 131 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-----KAHEGLVRGICVTQ--TSFFTVGDDKTV- 131 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-----ecccCceeeEEecc--cceEEecCCcce-
Confidence 3468999999999999976 68999999999999999988877776 55666777666665 333344444444
Q ss_pred eecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-c
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h 606 (755)
..|.+.+.+++++.+.. .++.|.-+.. ..+++++.+ |-|||.....+++.+. .
T Consensus 132 ----------------------K~wk~~~~p~~tilg~s-~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG 186 (433)
T KOG0268|consen 132 ----------------------KQWKIDGPPLHTILGKS-VYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWG 186 (433)
T ss_pred ----------------------eeeeccCCcceeeeccc-cccccccccccccccccCce--eeecccccCCccceeecC
Confidence 34555555666666543 3666665543 678888874 9999999999999998 7
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
.+.|.++.|+|....+|++|..|+.|.|||+++..++......-.-+.++|+|.+-.+++|+.|..++.||++......
T Consensus 187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~- 265 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL- 265 (433)
T ss_pred CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccc-
Confidence 7889999999977788999999999999999999988776667778899999988889999999999999998755433
Q ss_pred cccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
...++|...|.++.|+|.|+ .+++||.|.+||||..
T Consensus 266 -------~v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 266 -------NVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPV 301 (433)
T ss_pred -------hhhcccceeEEEeccCCCcc-hhccccccceEEEeec
Confidence 22458999999999999998 7999999999999984
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=7.4e-20 Score=193.01 Aligned_cols=256 Identities=17% Similarity=0.219 Sum_probs=215.4
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccc
Q 004404 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (755)
Q Consensus 457 ~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~ 536 (755)
-.|.++...|....++||+.|.++.++|....+.+..+ .||...+..+.++++...+.+++.+..+..|....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-----~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-- 292 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-----KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-- 292 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-----cCcceEEEEEEeccchhheeecCCcceEEeecccc--
Confidence 46888998888789999999999999999888877765 88999999999999988888887777764332221
Q ss_pred cccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecC---CceEE
Q 004404 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHS---DYVTC 612 (755)
Q Consensus 537 ~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~---~~Vts 612 (755)
.........|..+|+.+..+|. .||++++.|++..+.|++++.++....+. -.+++
T Consensus 293 --------------------~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts 352 (506)
T KOG0289|consen 293 --------------------SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTS 352 (506)
T ss_pred --------------------ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEE
Confidence 1233456789999999999998 89999999999999999999998888764 35899
Q ss_pred EEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccccc
Q 004404 613 IQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691 (755)
Q Consensus 613 VafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~ 691 (755)
.+||| ||.+|.+|..|+.|+|||+..+..+ .+-.|.++|.+++|+.+|-+|++++.|+.|++||++..+...++++
T Consensus 353 ~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l-- 429 (506)
T KOG0289|consen 353 AAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL-- 429 (506)
T ss_pred eeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec--
Confidence 99999 9999999999999999999988766 5566778999999999999999999999999999999887776653
Q ss_pred ccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE----CCcceEEeecCCccEEEEEE
Q 004404 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD----GIDLVHKFKGENYVQYMVCI 749 (755)
Q Consensus 692 ~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD----~~~ll~~~~GH~~~V~sv~f 749 (755)
.....|.++.|.+.|. +|+.++.|=+|++++ .+.++..+.-|......+.|
T Consensus 430 ------~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 430 ------DEKKEVNSLSFDQSGT-YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred ------cccccceeEEEcCCCC-eEEeecceeEEEEEecccccceeeehhhhcccccceeee
Confidence 2234799999999998 888899888888888 57777777777766666655
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=7.9e-21 Score=212.10 Aligned_cols=219 Identities=19% Similarity=0.284 Sum_probs=183.9
Q ss_pred CEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccc
Q 004404 458 SIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (755)
Q Consensus 458 ~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~ 536 (755)
.+..|+|.. +.++|||++..|.|.+||+....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~----------------------------------------------- 121 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI----------------------------------------------- 121 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc-----------------------------------------------
Confidence 456678875 56799999999999999984311
Q ss_pred cccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEE
Q 004404 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCI 613 (755)
Q Consensus 537 ~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsV 613 (755)
..+.+..|..|...|+++.|++. .+|++|++||+|++||++..+...++. ....|..|
T Consensus 122 -------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 122 -------------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred -------------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 12345567889999999999986 899999999999999999888777775 77889999
Q ss_pred EEeeCCCcEEEEEECCCcEEEEECCCCc--EEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccccc
Q 004404 614 QFNPVDDRYFISGSLDAKVRIWSIPERQ--VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691 (755)
Q Consensus 614 afsP~dg~~LaSgS~DgtVrIWDl~t~~--~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~ 691 (755)
.|+|..+.+|+++.+.|.+++||++... ..++..|.++|.++.|+|++.+||+|+.|+.|+|||+.+.+......+
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-- 260 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-- 260 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--
Confidence 9999889999999999999999998754 336778999999999999999999999999999999998766554433
Q ss_pred ccccccCCCCCeEEEEEccCCCeEEEEEE--CCCcEEEEEC---CcceEEeecCCccEEEEEEE
Q 004404 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVDG---IDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 692 ~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs--~Dg~IrVWD~---~~ll~~~~GH~~~V~sv~fs 750 (755)
....+|..|.|-|..+.+|++++ .|-.|+|||. .-+..+|.-|+..+..+++-
T Consensus 261 ------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 261 ------NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD 318 (839)
T ss_pred ------eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc
Confidence 23568999999999987888874 5889999994 34568899999999988874
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=6.5e-20 Score=202.15 Aligned_cols=269 Identities=14% Similarity=0.181 Sum_probs=210.1
Q ss_pred EEEeCCCcEEEEeeCCCCcccceeee----------------------e----------EeecccCCEEEEEEcCCCCEE
Q 004404 424 SFHGQERVRVRQYGKSCKDLTALYKC----------------------Q----------EIQAHNGSIWSIKFSLDGRYL 471 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~~~~~~~~~~----------------------q----------~l~gH~~~I~sI~fSpdg~~L 471 (755)
+.+.+.|++||+|++........+.. + ...+-...|.+|+.+|+|++|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 67778999999999876221111100 0 011235679999999999999
Q ss_pred EEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCC---CceeccccCCCceeeecccccccccccccCcccc
Q 004404 472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV 548 (755)
Q Consensus 472 aTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~d---g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~ 548 (755)
|+|..-|+++||++.+.+....+ ..|...+.++.++.. ..+|++++.+..|......+
T Consensus 475 AsGDr~GnlrVy~Lq~l~~~~~~-----eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-------------- 535 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQELEYTCFM-----EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-------------- 535 (1080)
T ss_pred cccCccCceEEEEehhhhhhhhe-----ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--------------
Confidence 99999999999999877765554 677888888888764 46677777776663332222
Q ss_pred cceeeecCCCceEEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCCCcEEEEee------cCCceEEEEEeeCC
Q 004404 549 PETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFS------HSDYVTCIQFNPVD 619 (755)
Q Consensus 549 ~~~v~~~s~k~i~~l~gH~~~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~~~~~~~~------h~~~VtsVafsP~d 619 (755)
...++.++.+|...|+++.|.-+ -.+++++.|+.|.+--.....-...|. ....++.++..| .
T Consensus 536 -------ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~ 607 (1080)
T KOG1408|consen 536 -------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-T 607 (1080)
T ss_pred -------ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-C
Confidence 12456788999999999999765 469999999987654333222222221 345789999999 8
Q ss_pred CcEEEEEECCCcEEEEECCCCcEEEecc----CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccccccccc
Q 004404 620 DRYFISGSLDAKVRIWSIPERQVVDWND----LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695 (755)
Q Consensus 620 g~~LaSgS~DgtVrIWDl~t~~~v~~~~----~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~ 695 (755)
-+++++++.|..|+||++..++.++.+. +.+....+...|.|-||++.+.|.++.+||+.+++++...
T Consensus 608 ~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-------- 679 (1080)
T KOG1408|consen 608 SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-------- 679 (1080)
T ss_pred cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh--------
Confidence 9999999999999999999999886653 4467889999999999999999999999999999998753
Q ss_pred ccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 696 ~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.+|...|+++.|.+|.+ +|++.+.||.|.||.
T Consensus 680 -~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 680 -TGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWK 711 (1080)
T ss_pred -cCcchheeeeeecccch-hheeecCCceEEEEE
Confidence 49999999999999998 899999999999998
No 110
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=1.2e-19 Score=200.59 Aligned_cols=405 Identities=16% Similarity=0.118 Sum_probs=259.6
Q ss_pred HHhcCCcHHHHHHHhhcc------cccCCCCCccccccCCCCCCccc------------------------------ccc
Q 004404 333 EMCVGHSPIVQELMRRQN------VEEGNKDSFDLNNNGSSGGGMKS------------------------------KKK 376 (755)
Q Consensus 333 ~~~~GHs~~V~~l~~~~~------~~sgs~D~tv~~~Wd~~~g~~~~------------------------------k~k 376 (755)
..+.||.+.|++|+|+.. ++|+|.|+.|| +|-+.-+.... .+-
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIR-iW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall 263 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIR-IWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALL 263 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEE-EEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhh
Confidence 567999999999999865 89999999999 99775443100 111
Q ss_pred CCcccccceeEEeeccccc-----cccCccccCCc----------------cCCCceeeeeecCCCcEEEEeCCCcEEEE
Q 004404 377 GSWFKSIRTVASSVTGHKE-----RRSSDERDTSS----------------EKGGRRSSSATDDSQDVSFHGQERVRVRQ 435 (755)
Q Consensus 377 ~~~~~~v~sv~~s~~g~~~-----~~~~~~~~~~~----------------~~g~~~~vs~~~ds~~~l~sg~~dg~Vri 435 (755)
-||-+-|.++...+++... +.+...|.+.. ..+|-.......++ +++++-+..|-.++
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHL 342 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcEEE
Confidence 3555556666555554211 11111121111 11111222222333 44566667788899
Q ss_pred eeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc-eeeeeecccccCccccEEEeecCCC
Q 004404 436 YGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANGSPE 514 (755)
Q Consensus 436 wd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~-~~~~l~~~~~~~~~~~v~~v~~s~d 514 (755)
|. +++.....+...+.||.+.|..|+|.|.|.||+|.|.|.+-||+---..+ .-.++. -+..|-..+.++++-+.
T Consensus 343 Wk--t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia--RPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 343 WK--TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA--RPQIHGYDLTCLSFVNE 418 (764)
T ss_pred Ee--ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeec--ccccccccceeeehccC
Confidence 97 33333334444578999999999999999999999999999998653111 112221 12345555666666664
Q ss_pred CceeccccCCCceeeecccc------------------------cccccccccCcccc------------ccee-----e
Q 004404 515 PTSLSPKHLDNHLEKKRRGR------------------------SINRKSLSLDHMVV------------PETV-----F 553 (755)
Q Consensus 515 g~~l~~~s~d~~i~~~~~~~------------------------~~~~~s~s~d~~~~------------~~~v-----~ 553 (755)
...++++.....+......+ .+....++...... .+.. .
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 44444443333322221111 00111111111110 0000 0
Q ss_pred ec-------------CCCceEEeccCCCCEEEEEecCC-cEEEEEeCC-----CcEEEEECCCCcEEEEee-cCCceEEE
Q 004404 554 AL-------------SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD-----KTVRLWHLSSKTCLKIFS-HSDYVTCI 613 (755)
Q Consensus 554 ~~-------------s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~D-----gtVrLWDl~t~~~~~~~~-h~~~VtsV 613 (755)
.+ ....++.+.||..+|++++.+|+ +.+++++.. -.|+||+..+...++.+. |.-.|+.|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 00 11234567899999999999998 667777654 359999999887777665 99999999
Q ss_pred EEeeCCCcEEEEEECCCcEEEEECCCCcEE-----EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC--eeeec
Q 004404 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVV-----DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN--KLQQK 686 (755)
Q Consensus 614 afsP~dg~~LaSgS~DgtVrIWDl~t~~~v-----~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~--~~~~~ 686 (755)
+|+| |+++|++.+.|.++.+|........ ....|...|.++.|+|++.++++++.|.+|++|..... +.+..
T Consensus 579 ~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 579 AFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred EECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence 9999 9999999999999999998553321 24567778999999999999999999999999999887 33322
Q ss_pred cccccccccccCCCCCeEEEEEccCC----CeEEEEEECCCcEEEEECC--------------cceEEeecCCccEEEEE
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGS----SSEVLVTSADSRIRVVDGI--------------DLVHKFKGENYVQYMVC 748 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg----~~~L~sgs~Dg~IrVWD~~--------------~ll~~~~GH~~~V~sv~ 748 (755)
+ ....+...|+.++|.|-. ...+++|-..|.|.||.-. ..+....+|...|+.++
T Consensus 658 ~-------a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~ 730 (764)
T KOG1063|consen 658 F-------ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLL 730 (764)
T ss_pred h-------chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeE
Confidence 1 123678899999997732 2267888899999999821 12233445666677777
Q ss_pred EEE
Q 004404 749 IVL 751 (755)
Q Consensus 749 fs~ 751 (755)
+.|
T Consensus 731 w~p 733 (764)
T KOG1063|consen 731 WRP 733 (764)
T ss_pred ecc
Confidence 765
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.8e-20 Score=183.85 Aligned_cols=232 Identities=16% Similarity=0.260 Sum_probs=183.1
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC--CCCEEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp--dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
..+++.+.|++|+|+.+.... +.+.+.+|.||.++|+.++|.. .|.+||+++.||.|.||.-+.++-
T Consensus 24 krlATcsSD~tVkIf~v~~n~--~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w--------- 92 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNNG--QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW--------- 92 (299)
T ss_pred ceeeeecCCccEEEEEEcCCC--CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch---------
Confidence 345677889999999987554 3456678999999999999976 899999999999999998654421
Q ss_pred cCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCc
Q 004404 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ 579 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~ 579 (755)
.....+..|...|++++|.|.+
T Consensus 93 ----------------------------------------------------------~k~~e~~~h~~SVNsV~waphe 114 (299)
T KOG1332|consen 93 ----------------------------------------------------------TKAYEHAAHSASVNSVAWAPHE 114 (299)
T ss_pred ----------------------------------------------------------hhhhhhhhhcccceeecccccc
Confidence 1233456799999999999973
Q ss_pred ---EEEEEeCCCcEEEEECCCC--cEEEE--eecCCceEEEEEeeCC--C-----------cEEEEEECCCcEEEEECCC
Q 004404 580 ---HLLSSSMDKTVRLWHLSSK--TCLKI--FSHSDYVTCIQFNPVD--D-----------RYFISGSLDAKVRIWSIPE 639 (755)
Q Consensus 580 ---~LaSgs~DgtVrLWDl~t~--~~~~~--~~h~~~VtsVafsP~d--g-----------~~LaSgS~DgtVrIWDl~t 639 (755)
.|++++.||+|.|.+++.. -.... +.|.-.|++++|.|.. + +.|++|+.|..|+||+...
T Consensus 115 ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~ 194 (299)
T KOG1332|consen 115 YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS 194 (299)
T ss_pred cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence 4889999999999998764 22222 2399999999999921 2 5799999999999999988
Q ss_pred CcEE---EeccCCCCEEEEEEccCC----CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 640 RQVV---DWNDLHEMVTAACYTPDG----QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 640 ~~~v---~~~~~~~~VtsvafSPdG----~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
+.-+ .+..|...|..++|.|.- .+||+++.||+|.||.........+. ..++.-...+..+.|++.|
T Consensus 195 ~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~------tll~~f~~~~w~vSWS~sG 268 (299)
T KOG1332|consen 195 DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK------TLLEEFPDVVWRVSWSLSG 268 (299)
T ss_pred cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccc------cccccCCcceEEEEEeccc
Confidence 6432 366788999999999953 68999999999999988733222221 1123456779999999999
Q ss_pred CeEEEEEECCCcEEEEE
Q 004404 713 SSEVLVTSADSRIRVVD 729 (755)
Q Consensus 713 ~~~L~sgs~Dg~IrVWD 729 (755)
. .|++++.|+.|.+|.
T Consensus 269 n-~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 269 N-ILAVSGGDNKVTLWK 284 (299)
T ss_pred c-EEEEecCCcEEEEEE
Confidence 8 899999999999997
No 112
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=202.25 Aligned_cols=365 Identities=15% Similarity=0.141 Sum_probs=242.3
Q ss_pred eeecCCceecHHHHHHhcCCcHHHHHHHhhcc----cccCCCCCccccccCCCCCCccccccCCcccccceeEEeecccc
Q 004404 319 KEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN----VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK 394 (755)
Q Consensus 319 ~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~----~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~ 394 (755)
=.+..++.| ..|.---+.|+++.||-| +++|..-+.+. +||......+...+..|...+....+
T Consensus 229 fNlK~dkil-----~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~-~wDLe~kkl~~v~~nah~~sv~~~~f------ 296 (910)
T KOG1539|consen 229 FNLKFDKIL-----MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMA-FWDLEKKKLINVTRNAHYGSVTGATF------ 296 (910)
T ss_pred EEcccCcEE-----EEEEccccceeEEEeccCCCeeEEeccCCceEE-EEEcCCCeeeeeeeccccCCccccee------
Confidence 345556666 444422477999999966 88888889888 99997655444444333222222111
Q ss_pred ccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEc-CCCCEEEE
Q 004404 395 ERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS-LDGRYLAS 473 (755)
Q Consensus 395 ~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fS-pdg~~LaT 473 (755)
..+..++++...|...++|-..+++..+.+ ++.-.||..+-.||+|. .+|.++.+
T Consensus 297 -----------------------l~~epVl~ta~~DnSlk~~vfD~~dg~pR~-LR~R~GHs~Pp~~irfy~~~g~~ils 352 (910)
T KOG1539|consen 297 -----------------------LPGEPVLVTAGADNSLKVWVFDSGDGVPRL-LRSRGGHSAPPSCIRFYGSQGHFILS 352 (910)
T ss_pred -----------------------cCCCceEeeccCCCceeEEEeeCCCCcchh-eeeccCCCCCchheeeeccCcEEEEe
Confidence 223445666666676666665555543322 23346999999999998 68999999
Q ss_pred EECCCcEEEEeCcCCceeeeeec------------c-cccCccccEEEeec--------------CCC-CceeccccCCC
Q 004404 474 AGEDCVIHVWQVVESERKGELLE------------K-QEDGHLNMLLLANG--------------SPE-PTSLSPKHLDN 525 (755)
Q Consensus 474 gs~DGtVrVWdl~t~~~~~~l~~------------~-~~~~~~~~v~~v~~--------------s~d-g~~l~~~s~d~ 525 (755)
++.|++.+.+++.......++.. . .......++..+++ ..+ ...........
T Consensus 353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~ 432 (910)
T KOG1539|consen 353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK 432 (910)
T ss_pred cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence 99999999888732221111100 0 00000001111110 001 01111111111
Q ss_pred ce----eeec----ccccccccccccCcccc-------cceeeec-CCCceEEe---ccCCCCEEEEEecCC-cEEEEEe
Q 004404 526 HL----EKKR----RGRSINRKSLSLDHMVV-------PETVFAL-SDKPICSF---QGHLDDVLDLSWSKS-QHLLSSS 585 (755)
Q Consensus 526 ~i----~~~~----~~~~~~~~s~s~d~~~~-------~~~v~~~-s~k~i~~l---~gH~~~V~~L~~spd-~~LaSgs 585 (755)
.+ .... .........++..+.+. .-.++.+ ++-....| ..|.++|+.++...- ..+++++
T Consensus 433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~ 512 (910)
T KOG1539|consen 433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG 512 (910)
T ss_pred ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc
Confidence 11 0000 01111112222221111 0133444 33444555 589999999999764 6799999
Q ss_pred CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe-ccCCCCEEEEEEccCCCEE
Q 004404 586 MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGA 664 (755)
Q Consensus 586 ~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~-~~~~~~VtsvafSPdG~~L 664 (755)
.+|-++.||.....++..+.-...++++..+. ....++.+..|-.|+++|+.+.++++. .+|.+.|++++|||||++|
T Consensus 513 ~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWl 591 (910)
T KOG1539|consen 513 ADGILKFWDFKKKVLKKSLRLGSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWL 591 (910)
T ss_pred CcceEEEEecCCcceeeeeccCCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEE
Confidence 99999999999999999998888999999998 788999999999999999999998854 4588999999999999999
Q ss_pred EEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC-CcEEEEECC
Q 004404 665 LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-SRIRVVDGI 731 (755)
Q Consensus 665 asGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D-g~IrVWD~~ 731 (755)
++++.|++|++||+.++.++..+. -..+++.+.|+|+|+ +|+++..| .-|++|-..
T Consensus 592 isasmD~tIr~wDlpt~~lID~~~----------vd~~~~sls~SPngD-~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 592 ISASMDSTIRTWDLPTGTLIDGLL----------VDSPCTSLSFSPNGD-FLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EEeecCCcEEEEeccCcceeeeEe----------cCCcceeeEECCCCC-EEEEEEecCceEEEEEch
Confidence 999999999999999999987653 457889999999999 89999887 779999843
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.2e-19 Score=183.94 Aligned_cols=271 Identities=18% Similarity=0.187 Sum_probs=197.4
Q ss_pred HHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeee
Q 004404 341 IVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSAT 417 (755)
Q Consensus 341 ~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~ 417 (755)
.|++|.|+.+ +.+.+.|.+++ +||..+|...+... . ++-|...+..+
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~-LYd~~~g~~~~ti~-----------s------------------kkyG~~~~~Ft 65 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLR-LYDSLSGKQVKTIN-----------S------------------KKYGVDLACFT 65 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEE-EEEcCCCceeeEee-----------c------------------ccccccEEEEe
Confidence 3778888887 66778899999 99998886443322 0 11111222222
Q ss_pred cCCCcEEE-EeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeec
Q 004404 418 DDSQDVSF-HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 418 ~ds~~~l~-sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
.....++. +...|..||..++...+. ++-+.||...|.+|+.+|-+..+++++.|++|++||+...++...+.
T Consensus 66 h~~~~~i~sStk~d~tIryLsl~dNky-----lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~- 139 (311)
T KOG1446|consen 66 HHSNTVIHSSTKEDDTIRYLSLHDNKY-----LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN- 139 (311)
T ss_pred cCCceEEEccCCCCCceEEEEeecCce-----EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-
Confidence 22222222 223478888888775554 34567999999999999988999999999999999997544332220
Q ss_pred ccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec
Q 004404 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
+.. -..++|.
T Consensus 140 ----------------------------------------------------------~~~------------~pi~AfD 149 (311)
T KOG1446|consen 140 ----------------------------------------------------------LSG------------RPIAAFD 149 (311)
T ss_pred ----------------------------------------------------------cCC------------CcceeEC
Confidence 011 1235788
Q ss_pred CCcEEEEEe-CCCcEEEEECCC--CcEEEEee----cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC
Q 004404 577 KSQHLLSSS-MDKTVRLWHLSS--KTCLKIFS----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (755)
Q Consensus 577 pd~~LaSgs-~DgtVrLWDl~t--~~~~~~~~----h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~ 649 (755)
|+|.+++.+ ....|+|||++. ..+..+|. .....+.|.|+| +|++|+.+...+.+++.|.-+|.+...+...
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~ 228 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGY 228 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence 887655444 444999999985 35566664 457899999999 9999999999999999999999877544332
Q ss_pred ----CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcE
Q 004404 650 ----EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (755)
Q Consensus 650 ----~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~I 725 (755)
......+|+||++++++|+.||+|++|+++++.....+. ..+..++.++.|.|. +...++.+..+
T Consensus 229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~--------~~~~~~~~~~~fnP~---~~mf~sa~s~l 297 (311)
T KOG1446|consen 229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR--------GPNGGPVSCVRFNPR---YAMFVSASSNL 297 (311)
T ss_pred cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec--------CCCCCCccccccCCc---eeeeeecCceE
Confidence 123688999999999999999999999999999887653 127888999999997 45556667788
Q ss_pred EEEE
Q 004404 726 RVVD 729 (755)
Q Consensus 726 rVWD 729 (755)
-+|=
T Consensus 298 ~fw~ 301 (311)
T KOG1446|consen 298 VFWL 301 (311)
T ss_pred EEEe
Confidence 8885
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.7e-19 Score=182.36 Aligned_cols=262 Identities=18% Similarity=0.234 Sum_probs=201.2
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
-++.|..|.|+|.+..|+.++.||.+++|++...+...++ .+..++..++|.++...+ ++..++.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~------~~~~plL~c~F~d~~~~~-~G~~dg~v------- 77 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF------KHGAPLLDCAFADESTIV-TGGLDGQV------- 77 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe------ecCCceeeeeccCCceEE-EeccCceE-------
Confidence 4678999999999999999999999999999887554443 456788888888865554 44455555
Q ss_pred cccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEE
Q 004404 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCI 613 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsV 613 (755)
..+++.......+..|...|.||.+++. +.+++|+.|++|++||.+...+..++.....|.++
T Consensus 78 ----------------r~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~ 141 (323)
T KOG1036|consen 78 ----------------RRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCM 141 (323)
T ss_pred ----------------EEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEE
Confidence 4556666667778889999999999986 99999999999999999987777777777799999
Q ss_pred EEeeCCCcEEEEEECCCcEEEEECCCCcEE---EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccc
Q 004404 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVV---DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (755)
Q Consensus 614 afsP~dg~~LaSgS~DgtVrIWDl~t~~~v---~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~ 690 (755)
.. .++.|+.|+.|..|.+||+++.... .....+-.+.++++-|++.-.++++-||+|.+=.+......+...+.
T Consensus 142 ~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 142 DV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred ec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence 87 4688999999999999999986543 23455678999999999999999999999987666554222211111
Q ss_pred ccc--cccc--CCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEeecCCccEEEEEEE
Q 004404 691 LQN--KKKR--SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 691 ~~~--~~~~--~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~~GH~~~V~sv~fs 750 (755)
+.. ...+ .--.+|++|+|+|-.. .|++|+.||.|.+||. .+.+..|......|.+++|.
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFS 283 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEec
Confidence 110 1111 1124799999999865 7999999999999994 56666676666667777764
No 115
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.2e-19 Score=198.78 Aligned_cols=225 Identities=17% Similarity=0.271 Sum_probs=192.4
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeec-ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~g-H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
..++.|..+|.|.+||....+. ...+.+ |...|-+++|+ +..|.+|+.|+.|.++|+...+..... ..
T Consensus 230 ~~LavG~~~g~v~iwD~~~~k~-----~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~----~~ 298 (484)
T KOG0305|consen 230 SHLAVGTSDGTVQIWDVKEQKK-----TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST----LQ 298 (484)
T ss_pred CEEEEeecCCeEEEEehhhccc-----cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh----hh
Confidence 4578999999999999874443 334556 99999999998 668999999999999999877655542 47
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS- 578 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd- 578 (755)
+|...+..+.|++++..++++..+..+. +|+. ...++..+..|.+.|.+++|+|-
T Consensus 299 ~H~qeVCgLkws~d~~~lASGgnDN~~~-----------------------Iwd~~~~~p~~~~~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 299 GHRQEVCGLKWSPDGNQLASGGNDNVVF-----------------------IWDGLSPEPKFTFTEHTAAVKALAWCPWQ 355 (484)
T ss_pred cccceeeeeEECCCCCeeccCCCccceE-----------------------eccCCCccccEEEeccceeeeEeeeCCCc
Confidence 7889999999999999999999998873 4444 45788899999999999999995
Q ss_pred -cEEEEEe--CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEE--ECCCcEEEEECCCCcEE-EeccCCCCE
Q 004404 579 -QHLLSSS--MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG--SLDAKVRIWSIPERQVV-DWNDLHEMV 652 (755)
Q Consensus 579 -~~LaSgs--~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSg--S~DgtVrIWDl~t~~~v-~~~~~~~~V 652 (755)
+.||+|+ .|++|++||..++..+........|..|.|++ ..+-|+++ ..+..|.||+..+.+.+ .+..|...|
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RV 434 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK-KYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRV 434 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcC-CCCEEEEecCCCCCcEEEEeccccceeeeecCCccee
Confidence 8899876 59999999999999999999999999999999 66555553 45678999999987666 667888999
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCC
Q 004404 653 TAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 653 tsvafSPdG~~LasGs~DG~I~lwDl~~~ 681 (755)
..++++|||..+++|+.|.++++|++-..
T Consensus 435 l~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 435 LYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999998764
No 116
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=6.6e-20 Score=190.62 Aligned_cols=218 Identities=24% Similarity=0.359 Sum_probs=177.1
Q ss_pred ecccCCEEEEEEcCCC--CEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeee
Q 004404 453 QAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 453 ~gH~~~I~sI~fSpdg--~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
.+|.+.|+-+.-++-+ .+.|+.+..|.|.||++...- ..+. ..+.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~---------------------------~~~~---- 194 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALS---------------------------EPGL---- 194 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhc---------------------------Cccc----
Confidence 4688999999888754 588889999999999984321 1100 0000
Q ss_pred cccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEE----Ee
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLK----IF 604 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~----~~ 604 (755)
.+-....+++.++.+|...=+.|+|+|- +.|++|..-+.|++|...++.-.. ..
T Consensus 195 --------------------~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~ 254 (440)
T KOG0302|consen 195 --------------------EVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFT 254 (440)
T ss_pred --------------------cccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCcccc
Confidence 0001245789999999999999999995 889999999999999998864322 22
Q ss_pred ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC---cEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 004404 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER---QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 605 ~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~---~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~ 681 (755)
.|+..|-.|+|+|.....|++|+.||+|+|||++.+ .++.+..|...|+.+.|+.+-.+||+|+.||+++|||++..
T Consensus 255 gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~ 334 (440)
T KOG0302|consen 255 GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF 334 (440)
T ss_pred ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhc
Confidence 499999999999977889999999999999999987 46667888899999999998889999999999999999876
Q ss_pred eeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+.... ...++.|..+|++|.|+|.....|++++.|.+|.|||
T Consensus 335 ~~~~p------VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 335 KSGQP------VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred cCCCc------ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 55421 1345689999999999998888999999999999999
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=193.74 Aligned_cols=255 Identities=17% Similarity=0.217 Sum_probs=204.2
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCc
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
++.+-..+-.|.+|.+..++....+. --.++|.+++-+|+|.||+.|+..|.|.+|.+.++..
T Consensus 53 llsaq~~rp~l~vw~i~k~~~~~q~~-----v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L------------ 115 (476)
T KOG0646|consen 53 LLSAQLKRPLLHVWEILKKDQVVQYI-----VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL------------ 115 (476)
T ss_pred eeeecccCccccccccCchhhhhhhc-----ccccceeeeecCCCceEEEeecccCcEEEEEeccccH------------
Confidence 34555667789999887665544222 2457899999999999999999999999999876643
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEE
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL 581 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~L 581 (755)
+..+.+|-..|+||.|+.| .+|
T Consensus 116 ---------------------------------------------------------L~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 116 ---------------------------------------------------------LNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred ---------------------------------------------------------HHHHHhhccceeEEEEeCCCcEE
Confidence 2334678899999999988 789
Q ss_pred EEEeCCCcEEEEECC---------CCcEEEEee-cCCceEEEEEeeC-CCcEEEEEECCCcEEEEECCCCcEEEeccCCC
Q 004404 582 LSSSMDKTVRLWHLS---------SKTCLKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650 (755)
Q Consensus 582 aSgs~DgtVrLWDl~---------t~~~~~~~~-h~~~VtsVafsP~-dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~ 650 (755)
++|+.||.|.+|.+. +-++++.|. |.-+|+.+...+. ...+|+++|.|.++++||+..+.++.....+.
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 999999999999864 235677776 9999999998872 24689999999999999999999998888999
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec------cc-cccccccccCCCC--CeEEEEEccCCCeEEEEEEC
Q 004404 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK------SP-INLQNKKKRSHQR--KITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 651 ~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~------~~-i~~~~~~~~~h~~--~Vtsl~fsPdg~~~L~sgs~ 721 (755)
.+.+++++|-++.+++|+.+|.|.+.++..-..... .. -......+.+|.+ .|++++.+-||. +|++|+.
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~ 297 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDE 297 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCC
Confidence 999999999999999999999999988765431110 00 0111234568888 999999999997 8999999
Q ss_pred CCcEEEEE--CCcceEEeecCCccEEEEEEEEE
Q 004404 722 DSRIRVVD--GIDLVHKFKGENYVQYMVCIVLF 752 (755)
Q Consensus 722 Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~F 752 (755)
||+|+||| ...+++++......|+.+.+.||
T Consensus 298 dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 298 DGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred CCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 99999999 46777777767777888877554
No 118
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=9.1e-19 Score=193.68 Aligned_cols=354 Identities=19% Similarity=0.186 Sum_probs=253.0
Q ss_pred HHHHHhhcc-----cccCCCCCccccccCCCCCCc--cccccCCcccccceeEEeeccccccccCccccCCccCCCceee
Q 004404 342 VQELMRRQN-----VEEGNKDSFDLNNNGSSGGGM--KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSS 414 (755)
Q Consensus 342 V~~l~~~~~-----~~sgs~D~tv~~~Wd~~~g~~--~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~v 414 (755)
-.+|++.++ ++.|+.+..+. ++....+.. ...+ .||.+-|+++++...++
T Consensus 148 pLcL~~~~~~~~~lla~Ggs~~~v~-~~s~~~d~f~~v~el-~GH~DWIrsl~f~~~~~--------------------- 204 (764)
T KOG1063|consen 148 PLCLAALKNNKTFLLACGGSKFVVD-LYSSSADSFARVAEL-EGHTDWIRSLAFARLGG--------------------- 204 (764)
T ss_pred hHHHhhhccCCcEEEEecCcceEEE-EeccCCcceeEEEEe-eccchhhhhhhhhccCC---------------------
Confidence 456666664 78888888887 665544322 2223 47888888877765432
Q ss_pred eeecCCCcEEEEeCCCcEEEEeeCCCCcccc---------------e-eee----------eEeecccCCEEEEEEcCCC
Q 004404 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTA---------------L-YKC----------QEIQAHNGSIWSIKFSLDG 468 (755)
Q Consensus 415 s~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~---------------~-~~~----------q~l~gH~~~I~sI~fSpdg 468 (755)
+..+++++++|..||+|.+.-+.... . ... ..+.||.+.|+++.|+|.+
T Consensus 205 -----~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~ 279 (764)
T KOG1063|consen 205 -----DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG 279 (764)
T ss_pred -----CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch
Confidence 23567899999999999875443111 0 111 1234999999999999999
Q ss_pred CEEEEEECCCcEEEEeCcCCceee--eeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcc
Q 004404 469 RYLASAGEDCVIHVWQVVESERKG--ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM 546 (755)
Q Consensus 469 ~~LaTgs~DGtVrVWdl~t~~~~~--~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~ 546 (755)
..|++++.|.++.||...+..-+. ........+.....+..-|++++..+++.+..+.+..+.....
T Consensus 280 ~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~----------- 348 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK----------- 348 (764)
T ss_pred hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc-----------
Confidence 999999999999999876553221 1111222344555778888999887777766666644441100
Q ss_pred cccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECC-CCcEEEEee----cCCceEEEEEeeCCC
Q 004404 547 VVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS-SKTCLKIFS----HSDYVTCIQFNPVDD 620 (755)
Q Consensus 547 ~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~-t~~~~~~~~----h~~~VtsVafsP~dg 620 (755)
..| .+...+.||.+.|.++.|.|. .+|++.+.|.|-|||-.- ....-+.+. |.-.++|++|-+ ..
T Consensus 349 ----~~w----~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~ 419 (764)
T KOG1063|consen 349 ----TFW----TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-ED 419 (764)
T ss_pred ----cce----eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CC
Confidence 011 234456799999999999998 789999999999999754 222234442 888999999997 57
Q ss_pred cEEEEEECCCcEEEEECCC----------C---------------------------------c----------------
Q 004404 621 RYFISGSLDAKVRIWSIPE----------R---------------------------------Q---------------- 641 (755)
Q Consensus 621 ~~LaSgS~DgtVrIWDl~t----------~---------------------------------~---------------- 641 (755)
..|++|.+...+|+|+... + .
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 8899999999999998521 0 0
Q ss_pred ------------------EEEeccCCCCEEEEEEccCCCEEEEEECCC-----cEEEEECCCCeeeeccccccccccccC
Q 004404 642 ------------------VVDWNDLHEMVTAACYTPDGQGALVGSYKG-----SCHLYNTSENKLQQKSPINLQNKKKRS 698 (755)
Q Consensus 642 ------------------~v~~~~~~~~VtsvafSPdG~~LasGs~DG-----~I~lwDl~~~~~~~~~~i~~~~~~~~~ 698 (755)
+.++++|...|++++.+|+|+++|+++... .|++|+..+-...+. +.+
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~---------L~~ 570 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE---------LEG 570 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe---------ecc
Confidence 001134445799999999999999987643 489999987666553 348
Q ss_pred CCCCeEEEEEccCCCeEEEEEECCCcEEEEECC------cceEEeecCCccEEEEEEEEEE
Q 004404 699 HQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI------DLVHKFKGENYVQYMVCIVLFF 753 (755)
Q Consensus 699 h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~------~ll~~~~GH~~~V~sv~fs~F~ 753 (755)
|.-.|+.++|+|+|. +|++.|.|.++.+|..+ --....+.|+..|+..+++|+-
T Consensus 571 HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred cceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence 999999999999998 89999999999999821 1234578999999999998863
No 119
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.3e-19 Score=198.99 Aligned_cols=280 Identities=17% Similarity=0.227 Sum_probs=219.3
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceee-eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc--eeeeeeccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYK-CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQ 498 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~-~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~--~~~~l~~~~ 498 (755)
.++++|+.|+.|++|+..........+ ...++.|.+.|..|....+++.|+++|.|-+|++|+...+. ++..
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st----- 112 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST----- 112 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh-----
Confidence 468999999999999987554432232 56788999999999999999999999999999999987663 2223
Q ss_pred ccCccccEEEeec-CCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEec-cCCCCEEEEEec
Q 004404 499 EDGHLNMLLLANG-SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWS 576 (755)
Q Consensus 499 ~~~~~~~v~~v~~-s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~-gH~~~V~~L~~s 576 (755)
...|...+.+++. .++..++++++.+..|..|......... +..........+. |+...|++++.+
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l------------~~s~n~~t~~sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL------------VASFNNVTVNSLGSGPKDSIYSLAMN 180 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhh------------hhhccccccccCCCCCccceeeeecC
Confidence 3567888888888 8888999999999988777655321100 0011122333344 899999999999
Q ss_pred CC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEE
Q 004404 577 KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVT 653 (755)
Q Consensus 577 pd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~Vt 653 (755)
+. ..|++|+..+.+++||.++.+.+..+. |...|.++..++ ||..+++++.||+|++||+..++++. ..-|...|+
T Consensus 181 ~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 181 QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceE
Confidence 88 467888999999999999987776665 999999999999 99999999999999999999998884 456777899
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 654 AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 654 svafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
++..+|+=+.+++|+.||.|+.=|+++......+. ....+|..+..+.... -+-+++.|+.|+-|-
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic---------k~daPv~~l~~~~~~~-~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC---------KEDAPVLKLHLHEHDN-SVWVTTTDSSIKRWK 325 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEecccCCchhheEee---------cCCCchhhhhhccccC-CceeeeccccceecC
Confidence 99999999999999999999999998853222211 2344566666664444 357788899999996
No 120
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.6e-19 Score=180.14 Aligned_cols=295 Identities=16% Similarity=0.196 Sum_probs=209.7
Q ss_pred ecHHHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCcccc
Q 004404 327 LTIEEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD 403 (755)
Q Consensus 327 lt~~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~ 403 (755)
.+.-....+.||...|+.++|+.| +++.+.|++|| +|+...-.. +..+.++..
T Consensus 74 ~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir-~w~~~DF~~---------~eHr~~R~n-------------- 129 (420)
T KOG2096|consen 74 VHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIR-LWDVRDFEN---------KEHRCIRQN-------------- 129 (420)
T ss_pred ccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEE-EEecchhhh---------hhhhHhhcc--------------
Confidence 344456789999999999999999 99999999999 998854221 111222211
Q ss_pred CCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccce-eee-----eEe-ecccCCEEEEEEcCCCCEEEEEEC
Q 004404 404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL-YKC-----QEI-QAHNGSIWSIKFSLDGRYLASAGE 476 (755)
Q Consensus 404 ~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~-~~~-----q~l-~gH~~~I~sI~fSpdg~~LaTgs~ 476 (755)
.+.++...+...+|...+++.-....++++|....++--.. +.. .+| +-|+-.|..+-....+.||+|++.
T Consensus 130 --ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~ 207 (420)
T KOG2096|consen 130 --VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL 207 (420)
T ss_pred --ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecC
Confidence 13346677777788887777777888999998754332111 100 111 357788888888889999999999
Q ss_pred CCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC
Q 004404 477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS 556 (755)
Q Consensus 477 DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s 556 (755)
|..|.||++. ++.+..+
T Consensus 208 dt~i~lw~lk-Gq~L~~i-------------------------------------------------------------- 224 (420)
T KOG2096|consen 208 DTKICLWDLK-GQLLQSI-------------------------------------------------------------- 224 (420)
T ss_pred CCcEEEEecC-Cceeeee--------------------------------------------------------------
Confidence 9999999986 4433332
Q ss_pred CCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECC---CC---cEEEEe---ecCCceEEEEEeeCCCcEEEEE
Q 004404 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS---SK---TCLKIF---SHSDYVTCIQFNPVDDRYFISG 626 (755)
Q Consensus 557 ~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~---t~---~~~~~~---~h~~~VtsVafsP~dg~~LaSg 626 (755)
...+..-+..+.+|+ .++++++..--|++|.+- .| +..+.| +|...|..++|+| +...+++.
T Consensus 225 -------dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtv 296 (420)
T KOG2096|consen 225 -------DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTV 296 (420)
T ss_pred -------ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEE
Confidence 111122344567888 456677777889999863 22 222333 4999999999999 99999999
Q ss_pred ECCCcEEEEECCCC-------cEEEec-----cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccc
Q 004404 627 SLDAKVRIWSIPER-------QVVDWN-----DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694 (755)
Q Consensus 627 S~DgtVrIWDl~t~-------~~v~~~-----~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~ 694 (755)
+.||+++|||+.-. +.++.. ........+.++|.|+.|+++. ...+++|..++++....+.
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e------ 369 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE------ 369 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH------
Confidence 99999999998532 112111 1223455899999999888865 5679999999988776543
Q ss_pred cccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 695 KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 695 ~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+.|...|++|+|+++|+ ++ .++.|..+||+-
T Consensus 370 --~~h~~~Is~is~~~~g~-~~-atcGdr~vrv~~ 400 (420)
T KOG2096|consen 370 --DIHSTTISSISYSSDGK-YI-ATCGDRYVRVIR 400 (420)
T ss_pred --HhhcCceeeEEecCCCc-EE-eeecceeeeeec
Confidence 37999999999999997 44 455678888876
No 121
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=2.9e-19 Score=195.99 Aligned_cols=300 Identities=16% Similarity=0.200 Sum_probs=210.9
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCccc-ceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeec
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLT-ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~-~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
+.-..+|+.+.++|.|.++|.....+. ....+..+.+|.++|..++|-|-...|++++.|.+|++||+.+.+....-
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-- 138 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-- 138 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce--
Confidence 334567899999999999998876665 22223557799999999999996669999999999999999988776552
Q ss_pred ccccCccccEEEeecCCC-CceeccccCCCceeeecccccccccccccCcccccc--e---eeecCCCceEEeccCCCCE
Q 004404 497 KQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE--T---VFALSDKPICSFQGHLDDV 570 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~d-g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~--~---v~~~s~k~i~~l~gH~~~V 570 (755)
...+|...+..+++.+. ...+++|..++.+.+|...-......-..+..+... . -.....+.+...+.|...|
T Consensus 139 -~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti 217 (720)
T KOG0321|consen 139 -LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI 217 (720)
T ss_pred -eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence 13678888888888886 667788888998888766542211100001100000 0 0000112334445565555
Q ss_pred EE----EEecCCcEEEEEeC-CCcEEEEECCCCcEEEEe------e---c---CCceEEEEEeeCCCcEEEEEECCCcEE
Q 004404 571 LD----LSWSKSQHLLSSSM-DKTVRLWHLSSKTCLKIF------S---H---SDYVTCIQFNPVDDRYFISGSLDAKVR 633 (755)
Q Consensus 571 ~~----L~~spd~~LaSgs~-DgtVrLWDl~t~~~~~~~------~---h---~~~VtsVafsP~dg~~LaSgS~DgtVr 633 (755)
.. +.|-.+..|++++. |+.|+|||++...+.... . | .-.++++.... .|.+|++.+.|+.|+
T Consensus 218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy 296 (720)
T KOG0321|consen 218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIY 296 (720)
T ss_pred eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEE
Confidence 44 55554588999988 999999999875443322 1 3 23567777766 567776666799999
Q ss_pred EEECCCCcEE--EeccCC---CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEE
Q 004404 634 IWSIPERQVV--DWNDLH---EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (755)
Q Consensus 634 IWDl~t~~~v--~~~~~~---~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (755)
+|++.....- ..+.++ ..-..-..+||+.+|++|+.|...++|.+.+....... +.+|...|+.++|
T Consensus 297 ~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~--------l~Ght~eVt~V~w 368 (720)
T KOG0321|consen 297 FYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL--------LLGHTREVTTVRW 368 (720)
T ss_pred EEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh--------hhCcceEEEEEee
Confidence 9999875432 222221 12234457899999999999999999999886654432 4599999999999
Q ss_pred ccCCCeEEEEEECCCcEEEEE
Q 004404 709 APGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 709 sPdg~~~L~sgs~Dg~IrVWD 729 (755)
.|..-..++++++|.+++||+
T Consensus 369 ~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 369 LPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred ccccCCCceeeccCcceEEEe
Confidence 987666799999999999998
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.3e-19 Score=179.31 Aligned_cols=226 Identities=18% Similarity=0.290 Sum_probs=178.5
Q ss_pred ecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecc
Q 004404 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (755)
Q Consensus 453 ~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~ 532 (755)
..|.+.|..+...-.|++||||+.|++|+|+.+.....
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 47999999999998999999999999999999754321
Q ss_pred cccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC-C--cEEEEEeCCCcEEEEECCCCcEEEEee---c
Q 004404 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S--QHLLSSSMDKTVRLWHLSSKTCLKIFS---H 606 (755)
Q Consensus 533 ~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp-d--~~LaSgs~DgtVrLWDl~t~~~~~~~~---h 606 (755)
.+++.+|.||.++|+.++|.. . ..|++++.||.|.||.-..++-.+... |
T Consensus 46 ------------------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h 101 (299)
T KOG1332|consen 46 ------------------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH 101 (299)
T ss_pred ------------------------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence 134668899999999999964 3 789999999999999988875444332 9
Q ss_pred CCceEEEEEeeCC-CcEEEEEECCCcEEEEECCCC-c---EEEeccCCCCEEEEEEccC---C-----------CEEEEE
Q 004404 607 SDYVTCIQFNPVD-DRYFISGSLDAKVRIWSIPER-Q---VVDWNDLHEMVTAACYTPD---G-----------QGALVG 667 (755)
Q Consensus 607 ~~~VtsVafsP~d-g~~LaSgS~DgtVrIWDl~t~-~---~v~~~~~~~~VtsvafSPd---G-----------~~LasG 667 (755)
...|++|+|-|.+ +-.|++++.||+|.|.+.+.. . ......|.-.|++++|.|- | +.|++|
T Consensus 102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg 181 (299)
T KOG1332|consen 102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG 181 (299)
T ss_pred cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc
Confidence 9999999999932 457899999999999998764 2 1234456778999999995 4 569999
Q ss_pred ECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC---CeEEEEEECCCcEEEEECCcc-----eEEeec
Q 004404 668 SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS---SSEVLVTSADSRIRVVDGIDL-----VHKFKG 739 (755)
Q Consensus 668 s~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg---~~~L~sgs~Dg~IrVWD~~~l-----l~~~~G 739 (755)
+.|..|+||+..++.-... ..+.+|...|..++|.|.- ...|++++.||+|.||-..+. ...++.
T Consensus 182 GcDn~VkiW~~~~~~w~~e-------~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 182 GCDNLVKIWKFDSDSWKLE-------RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred CCccceeeeecCCcchhhh-------hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc
Confidence 9999999999998743322 3367999999999999963 458999999999999973211 122333
Q ss_pred CCccEEEEEEEE
Q 004404 740 ENYVQYMVCIVL 751 (755)
Q Consensus 740 H~~~V~sv~fs~ 751 (755)
+...++.++++.
T Consensus 255 f~~~~w~vSWS~ 266 (299)
T KOG1332|consen 255 FPDVVWRVSWSL 266 (299)
T ss_pred CCcceEEEEEec
Confidence 567788887754
No 123
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=3.5e-19 Score=185.26 Aligned_cols=235 Identities=19% Similarity=0.289 Sum_probs=178.2
Q ss_pred CcEEEEeCCCcEEEEeeCCCC-----------cccceeeeeEeecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCC
Q 004404 421 QDVSFHGQERVRVRQYGKSCK-----------DLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVES 488 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~-----------~~~~~~~~q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~ 488 (755)
..+.++-++.|+|.||++... .......+.++.+|.+.=++|+|||-- -.|+||..-+.|++|...++
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 455678899999999997531 112233345678999999999999932 25889988899999987553
Q ss_pred ceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCC
Q 004404 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (755)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~ 568 (755)
.-. .. ...|.+|+.
T Consensus 245 ~W~---------------------------------------------------------------vd---~~Pf~gH~~ 258 (440)
T KOG0302|consen 245 SWK---------------------------------------------------------------VD---QRPFTGHTK 258 (440)
T ss_pred cee---------------------------------------------------------------ec---Ccccccccc
Confidence 211 01 123567999
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEECCCC---cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC---
Q 004404 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK---TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--- 640 (755)
Q Consensus 569 ~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~---~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~--- 640 (755)
.|-+|+|+|. +.|++||.||+|+|||++.+ .++.+-.|.+.|+.|.|+. ...+|++|+.||+++|||++.-
T Consensus 259 SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~ 337 (440)
T KOG0302|consen 259 SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSG 337 (440)
T ss_pred chhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCC
Confidence 9999999996 89999999999999999987 5555555999999999998 6679999999999999999864
Q ss_pred cEE-EeccCCCCEEEEEEccC-CCEEEEEECCCcEEEEECCCCeee--------eccccccccccccCC--CCCeEEEEE
Q 004404 641 QVV-DWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQ--------QKSPINLQNKKKRSH--QRKITGFQF 708 (755)
Q Consensus 641 ~~v-~~~~~~~~VtsvafSPd-G~~LasGs~DG~I~lwDl~~~~~~--------~~~~i~~~~~~~~~h--~~~Vtsl~f 708 (755)
+++ .+..|..+|+++.|+|. ...|++++.|..|.|||+.-..-. ..++ .++.+-+.-| ++.|..+.|
T Consensus 338 ~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~-dlPpQLLFVHqGQke~KevhW 416 (440)
T KOG0302|consen 338 QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQ-DLPPQLLFVHQGQKEVKEVHW 416 (440)
T ss_pred CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchh-cCCceeEEEecchhHhhhhee
Confidence 444 56677889999999995 467888899999999999643220 1100 1222223345 456889999
Q ss_pred ccCCCeEEEEEECCC
Q 004404 709 APGSSSEVLVTSADS 723 (755)
Q Consensus 709 sPdg~~~L~sgs~Dg 723 (755)
+++-+.+|++++.||
T Consensus 417 H~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 417 HRQIPGLLVSTAIDG 431 (440)
T ss_pred ccCCCCeEEEecccc
Confidence 999887899998887
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=5.3e-19 Score=180.44 Aligned_cols=270 Identities=16% Similarity=0.170 Sum_probs=193.8
Q ss_pred CceecHHHHHHhcCCcHHHHHHHhhcc-cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccc
Q 004404 324 GRQLTIEEFEMCVGHSPIVQELMRRQN-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER 402 (755)
Q Consensus 324 g~~lt~~e~~~~~GHs~~V~~l~~~~~-~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~ 402 (755)
.++.|+--.-.|.-|...+++||.+.- ++|||.|.||. +||..+......+- .|...|..+.+...
T Consensus 28 s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~-IYDm~k~~qlg~ll-~HagsitaL~F~~~----------- 94 (362)
T KOG0294|consen 28 SVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIH-IYDMRKRKQLGILL-SHAGSITALKFYPP----------- 94 (362)
T ss_pred ccceeeeccccccccccceeEEEecceeEeccCCCCcEE-EEeccchhhhccee-ccccceEEEEecCC-----------
Confidence 334444444677889999999999776 99999999999 99986554433333 34444544444432
Q ss_pred cCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEE
Q 004404 403 DTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV 482 (755)
Q Consensus 403 ~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrV 482 (755)
.+..-+++|.+||.|.+|+.. ....+..+++|.+.|+.|+.+|.|++.++.+.|+.+++
T Consensus 95 ----------------~S~shLlS~sdDG~i~iw~~~-----~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 95 ----------------LSKSHLLSGSDDGHIIIWRVG-----SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRT 153 (362)
T ss_pred ----------------cchhheeeecCCCcEEEEEcC-----CeEEeeeecccccccceeEecCCCceEEEEcCCceeee
Confidence 111247899999999999987 34456778899999999999999999999999999999
Q ss_pred EeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEE
Q 004404 483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS 562 (755)
Q Consensus 483 Wdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~ 562 (755)
||+..++.-..+.. .+....+.|+|.|..++....+.. .+|.+....+..
T Consensus 154 WNLV~Gr~a~v~~L------~~~at~v~w~~~Gd~F~v~~~~~i------------------------~i~q~d~A~v~~ 203 (362)
T KOG0294|consen 154 WNLVRGRVAFVLNL------KNKATLVSWSPQGDHFVVSGRNKI------------------------DIYQLDNASVFR 203 (362)
T ss_pred ehhhcCccceeecc------CCcceeeEEcCCCCEEEEEeccEE------------------------EEEecccHhHhh
Confidence 99998876544421 122233788888876655433322 122222222222
Q ss_pred eccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEee-CCCcEEEEEECCCcEEEEECCCC
Q 004404 563 FQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNP-VDDRYFISGSLDAKVRIWSIPER 640 (755)
Q Consensus 563 l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP-~dg~~LaSgS~DgtVrIWDl~t~ 640 (755)
.-.....+.++.|...+.|++|+.|+.|++||.....+...|. |...|..+.+-- .++.+|++++.||.|+|||++..
T Consensus 204 ~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 204 EIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred hhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 2223356888999888999999999999999999988888886 999999998432 15689999999999999999775
Q ss_pred -----cEEEeccCCCCEEEEEE
Q 004404 641 -----QVVDWNDLHEMVTAACY 657 (755)
Q Consensus 641 -----~~v~~~~~~~~Vtsvaf 657 (755)
.++........++++..
T Consensus 284 ~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 284 TKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred ccCCcceeEEeecCCccceeee
Confidence 34444455555665554
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=3.9e-19 Score=189.86 Aligned_cols=241 Identities=20% Similarity=0.317 Sum_probs=197.0
Q ss_pred cccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccc
Q 004404 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~ 533 (755)
+|..-|.++++|...++++||+. |.|+|||+.......-+.........+.+..+...+++..|+++.....+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls----- 490 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS----- 490 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee-----
Confidence 69999999999999999999986 789999996653322221112223456788889999999998887766653
Q ss_pred ccccccccccCcccccceeeecCC---CceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCC
Q 004404 534 RSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608 (755)
Q Consensus 534 ~~~~~~s~s~d~~~~~~~v~~~s~---k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~ 608 (755)
+|++.. +.-.++..-.-..++|+.+|| +..+++..||.|.|||+.....++.|. |.+
T Consensus 491 ------------------iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 491 ------------------IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred ------------------eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 444422 111223333345788999999 778899999999999999999999997 999
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccc
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
.+.||.+++ +|..|.+|+.|.+||.||+++++.+........|.++.++|++.+|++|-.++.+.+......+..+
T Consensus 553 GascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq--- 628 (705)
T KOG0639|consen 553 GASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ--- 628 (705)
T ss_pred CceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcccee---
Confidence 999999999 9999999999999999999999988878888999999999999999999999999998876654433
Q ss_pred cccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+.-|...|.++.|.+-|+ ++++.+.|.-+..|.+
T Consensus 629 -------lhlheScVLSlKFa~cGk-wfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 629 -------LHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRT 662 (705)
T ss_pred -------ecccccEEEEEEecccCc-eeeecCchhhhhhccC
Confidence 236889999999999998 8999999999999984
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.7e-20 Score=206.35 Aligned_cols=221 Identities=23% Similarity=0.441 Sum_probs=189.8
Q ss_pred EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeee
Q 004404 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 451 ~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
++.+|...|.++..-..++.+++|+.|..+-+|.+....
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----------------------------------------- 61 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----------------------------------------- 61 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-----------------------------------------
Confidence 455799999999987788999999999999999863211
Q ss_pred cccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCC
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~ 608 (755)
.+..|.+|..+|.+|.|++. .+|++|+.+|+|++||+..++.++++. |..
T Consensus 62 ----------------------------~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~ 113 (825)
T KOG0267|consen 62 ----------------------------AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL 113 (825)
T ss_pred ----------------------------hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhcccc
Confidence 12247899999999999998 778899999999999999999888885 999
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecc
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~ 687 (755)
.+..|.|+| -+.++++|+.|+.+++||++..-+.. ...|...+..+.|+|+|++++.|+.|..++|||+..|++...+
T Consensus 114 ~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef 192 (825)
T KOG0267|consen 114 NITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF 192 (825)
T ss_pred Ccceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc
Confidence 999999999 89999999999999999999655554 4456667889999999999999999999999999999988764
Q ss_pred ccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
++|...|..+.|+|..- +++.|+.|++|++|| +.+.+...+.....|.+..|.+
T Consensus 193 ---------~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 193 ---------KSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred ---------ccccccccccccCchhh-hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC
Confidence 48999999999999875 788899999999999 4677777777777788877754
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.7e-19 Score=201.61 Aligned_cols=228 Identities=16% Similarity=0.296 Sum_probs=180.4
Q ss_pred CCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeeccc
Q 004404 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (755)
Q Consensus 420 s~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~ 498 (755)
-.+++++....|.|-+||+...- .-..++.|..|+..|+++.|++ ...+|+|||.||+|++||+...+..
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~--rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~------- 169 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSI--RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK------- 169 (839)
T ss_pred hhhhheeecCCCcEEEEecCccc--cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc-------
Confidence 34667888999999999997521 1112244678999999999998 4569999999999999998654322
Q ss_pred ccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd 578 (755)
.++.+....|.++.|+|.
T Consensus 170 --------------------------------------------------------------~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 170 --------------------------------------------------------------STFRSNSESIRDVKFSPG 187 (839)
T ss_pred --------------------------------------------------------------ccccccchhhhceeeccC
Confidence 223445677999999996
Q ss_pred --cEEEEEeCCCcEEEEECCCC-cEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE--EEeccCCCCE
Q 004404 579 --QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMV 652 (755)
Q Consensus 579 --~~LaSgs~DgtVrLWDl~t~-~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~--v~~~~~~~~V 652 (755)
.+|+++...|.+++||++.. ++...+. |.++|.|+.|+| +..+||+|+.|++|+|||+.+.+. ...+..-.+|
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv 266 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPV 266 (839)
T ss_pred CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeeccee
Confidence 78999999999999999864 5555665 999999999999 999999999999999999987553 3445556799
Q ss_pred EEEEEccCCCE-EEEEE--CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEE
Q 004404 653 TAACYTPDGQG-ALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (755)
Q Consensus 653 tsvafSPdG~~-LasGs--~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrV 727 (755)
..|.|-|..++ |++++ .|-.|+|||++...+.. ..+..|...++.++|-......+.+++.|++|..
T Consensus 267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~--------~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY--------ATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eeeeeccCccchhhhhhccccceEEEEeeccccccc--------eeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 99999997755 55544 37789999998765443 2345899999999998765668999999998753
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=1e-18 Score=186.61 Aligned_cols=269 Identities=16% Similarity=0.213 Sum_probs=218.3
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..+++| ..+-|++||+................-.+-|.++.+.|||+.|++|++-.++.|||+.......... ...
T Consensus 432 rhVyTg-GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae---lts 507 (705)
T KOG0639|consen 432 RHVYTG-GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE---LTS 507 (705)
T ss_pred ceeEec-CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh---cCC
Confidence 335555 5677999999765432211111123456789999999999999999999999999997654322110 122
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC-CceEEeccCCCCEEEEEecCC-c
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS-Q 579 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~-k~i~~l~gH~~~V~~L~~spd-~ 579 (755)
..-.+..++.+||.++..++-.++.| .+|++.. ..++.|+||++.+.||.++++ .
T Consensus 508 sapaCyALa~spDakvcFsccsdGnI-----------------------~vwDLhnq~~VrqfqGhtDGascIdis~dGt 564 (705)
T KOG0639|consen 508 SAPACYALAISPDAKVCFSCCSDGNI-----------------------AVWDLHNQTLVRQFQGHTDGASCIDISKDGT 564 (705)
T ss_pred cchhhhhhhcCCccceeeeeccCCcE-----------------------EEEEcccceeeecccCCCCCceeEEecCCCc
Confidence 23456678899999888888788877 4666644 457889999999999999999 5
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEcc
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSP 659 (755)
.|.+|+-|.+||-||+++++.++.....+.|.++.+.| .+++|+.|-..+.|.|......+...+..|..-|.++.|.+
T Consensus 565 klWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 565 KLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY 643 (705)
T ss_pred eeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccccEEEEEEecc
Confidence 69999999999999999998888877889999999999 99999999999999999988877778888889999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 660 dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.|+++++.+.|..+-.|.+..|..+... .....|+++..+-+.+ +|++|+.|....||.
T Consensus 644 cGkwfvStGkDnlLnawrtPyGasiFqs----------kE~SsVlsCDIS~ddk-yIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGASIFQS----------KESSSVLSCDISFDDK-YIVTGSGDKKATVYE 702 (705)
T ss_pred cCceeeecCchhhhhhccCccccceeec----------cccCcceeeeeccCce-EEEecCCCcceEEEE
Confidence 9999999999999999999888776532 3457899999999887 899999999988885
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=3.8e-17 Score=173.05 Aligned_cols=283 Identities=12% Similarity=0.075 Sum_probs=187.2
Q ss_pred cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCC
Q 004404 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (755)
Q Consensus 351 ~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~d 430 (755)
+++++.|+++. +||..++........ + ..+.. +....++..+++++..+
T Consensus 4 ~~s~~~d~~v~-~~d~~t~~~~~~~~~-~-~~~~~----------------------------l~~~~dg~~l~~~~~~~ 52 (300)
T TIGR03866 4 YVSNEKDNTIS-VIDTATLEVTRTFPV-G-QRPRG----------------------------ITLSKDGKLLYVCASDS 52 (300)
T ss_pred EEEecCCCEEE-EEECCCCceEEEEEC-C-CCCCc----------------------------eEECCCCCEEEEEECCC
Confidence 45778899999 999877654333321 1 01111 12223344445667788
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEE-ECCCcEEEEeCcCCceeeeeecccccCccccEEEe
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTg-s~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v 509 (755)
+.|++|+..+++... .+..|.. +..++|+|++++|+++ +.|+.|++||+.+.+.+..+.. + .....+
T Consensus 53 ~~v~~~d~~~~~~~~-----~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~----~--~~~~~~ 120 (300)
T TIGR03866 53 DTIQVIDLATGEVIG-----TLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV----G--VEPEGM 120 (300)
T ss_pred CeEEEEECCCCcEEE-----eccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----C--CCcceE
Confidence 999999988665432 2333433 5678999999977654 5689999999988765554421 1 123567
Q ss_pred ecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEEEEecCC-cEEE-EEeC
Q 004404 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLL-SSSM 586 (755)
Q Consensus 510 ~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L~~spd-~~La-Sgs~ 586 (755)
.++|++.+++++..+.... .+++.. .+.+..+. ....+..++|+|+ .+|+ ++..
T Consensus 121 ~~~~dg~~l~~~~~~~~~~----------------------~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 177 (300)
T TIGR03866 121 AVSPDGKIVVNTSETTNMA----------------------HFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEI 177 (300)
T ss_pred EECCCCCEEEEEecCCCeE----------------------EEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCC
Confidence 8899998887765443211 111111 11222221 2234577899998 4554 4456
Q ss_pred CCcEEEEECCCCcEEEEee-cC-----C--ceEEEEEeeCCCcEEEE-EECCCcEEEEECCCCcEEEeccCCCCEEEEEE
Q 004404 587 DKTVRLWHLSSKTCLKIFS-HS-----D--YVTCIQFNPVDDRYFIS-GSLDAKVRIWSIPERQVVDWNDLHEMVTAACY 657 (755)
Q Consensus 587 DgtVrLWDl~t~~~~~~~~-h~-----~--~VtsVafsP~dg~~LaS-gS~DgtVrIWDl~t~~~v~~~~~~~~Vtsvaf 657 (755)
++.|++||+.+++++..+. +. . ....++|+| ++++++. ...++.|.+||+.+++++....+...+.+++|
T Consensus 178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR03866 178 GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF 256 (300)
T ss_pred CCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE
Confidence 9999999999998877664 11 1 235688999 8887544 45577899999999888765555668999999
Q ss_pred ccCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEcc
Q 004404 658 TPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (755)
Q Consensus 658 SPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsP 710 (755)
+|+|++|+++. .+|.|++||+.+++.+..+. .....++++++|
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~----------~~~~~~~~~~~~ 300 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK----------VGRLPWGVVVRP 300 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----------cccccceeEeCC
Confidence 99999998864 58999999999998877653 124557777765
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.1e-17 Score=170.49 Aligned_cols=254 Identities=17% Similarity=0.274 Sum_probs=183.8
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC--CCCEEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp--dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
..+++++.|.+|+||+.. +......+...++.|.++|+.|.|.+ -|+.+|+++.|++|.||.-.... +
T Consensus 26 RRmAtCSsDq~vkI~d~~-~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~----~----- 95 (361)
T KOG2445|consen 26 RRMATCSSDQTVKIWDST-SDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS----E----- 95 (361)
T ss_pred ceeeeccCCCcEEEEecc-CCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc----c-----
Confidence 446788999999999973 34445555667899999999999966 69999999999999999742110 0
Q ss_pred cCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-
Q 004404 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd- 578 (755)
..+. .......++......|++++|.|.
T Consensus 96 ~~~~---------------------------------------------------~~Wv~~ttl~DsrssV~DV~FaP~h 124 (361)
T KOG2445|consen 96 EAHG---------------------------------------------------RRWVRRTTLVDSRSSVTDVKFAPKH 124 (361)
T ss_pred cccc---------------------------------------------------ceeEEEEEeecCCcceeEEEecchh
Confidence 0000 011234456667788999999997
Q ss_pred --cEEEEEeCCCcEEEEECCCC------cEEEEee--------cCCceEEEEEeeC--CCcEEEEEECC-----CcEEEE
Q 004404 579 --QHLLSSSMDKTVRLWHLSSK------TCLKIFS--------HSDYVTCIQFNPV--DDRYFISGSLD-----AKVRIW 635 (755)
Q Consensus 579 --~~LaSgs~DgtVrLWDl~t~------~~~~~~~--------h~~~VtsVafsP~--dg~~LaSgS~D-----gtVrIW 635 (755)
-+|++++.||+||||+.-.. .+.+.+. +..+..||.|+|. ...+|+.|+.+ +.++||
T Consensus 125 lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iy 204 (361)
T KOG2445|consen 125 LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIY 204 (361)
T ss_pred cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEE
Confidence 45999999999999986532 2333332 6677899999982 24678888876 578999
Q ss_pred ECCCC--cEE---EeccCCCCEEEEEEccCC----CEEEEEECCCcEEEEECCCCe------------eeecccccccc-
Q 004404 636 SIPER--QVV---DWNDLHEMVTAACYTPDG----QGALVGSYKGSCHLYNTSENK------------LQQKSPINLQN- 693 (755)
Q Consensus 636 Dl~t~--~~v---~~~~~~~~VtsvafSPdG----~~LasGs~DG~I~lwDl~~~~------------~~~~~~i~~~~- 693 (755)
..... +.. .+.++..+|+.++|.|+- ..||+++.|| |+||.+.... ....++ +..
T Consensus 205 e~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~--v~~v 281 (361)
T KOG2445|consen 205 EYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLP--VEKV 281 (361)
T ss_pred EecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccc--eEEe
Confidence 76543 222 455778899999999952 6799999999 9999998422 111111 111
Q ss_pred ccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE-----CCcceEEeecC
Q 004404 694 KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-----GIDLVHKFKGE 740 (755)
Q Consensus 694 ~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD-----~~~ll~~~~GH 740 (755)
..+..|.+.|..+.|.-.|. .|.++|.||.||+|. ..+++..++..
T Consensus 282 s~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 282 SELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred eeccCCCCceEEEEEeeeee-EEeecCCCceeeehhhhhhhhheeeeEEecc
Confidence 23568999999999999986 899999999999997 35566655543
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=190.11 Aligned_cols=242 Identities=19% Similarity=0.276 Sum_probs=183.3
Q ss_pred ecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecc
Q 004404 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (755)
Q Consensus 453 ~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~ 532 (755)
.+|+..-+.|+|.|+|.+|+|++.||.|++|+........+.. ..+...+..++ .....++++..+..+..+..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti----~~~g~~v~~ia--~~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI----DISGELVSSIA--CYSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh----hccCceeEEEe--ecccceEEeeccceEEEeeC
Confidence 3799999999999999999999999999999986663222211 11222233322 23346666666665533322
Q ss_pred cccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCce
Q 004404 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYV 610 (755)
Q Consensus 533 ~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~V 610 (755)
.. +..-..+.-.+-++.+++++.+ .+++.||.|-.|++-++........+. |.++|
T Consensus 84 ps----------------------~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV 141 (933)
T KOG1274|consen 84 PS----------------------GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV 141 (933)
T ss_pred CC----------------------CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCce
Confidence 21 1111122234467899999988 678999999999999999887777775 99999
Q ss_pred EEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC---------CCCEEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 004404 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL---------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 611 tsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~---------~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~ 681 (755)
.+|.|+| .+++||+.+.||+|+|||+.++.+..+... ...++.++|+|+|..|++...|+.|++|+..+.
T Consensus 142 l~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 142 LQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 9999999 999999999999999999999876533221 246788999999888888888999999999998
Q ss_pred eeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECC
Q 004404 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (755)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~ 731 (755)
.+...+.. +.+...+..++|+|.|. ||++++.||.|-|||..
T Consensus 221 e~~f~Lr~-------~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 221 ELQFKLRD-------KLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVD 262 (933)
T ss_pred eeheeecc-------cccccceEEEEEcCCCc-EEeeeccCCcEEEEecc
Confidence 88776542 23445599999999998 89999999999999964
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.6e-19 Score=200.31 Aligned_cols=214 Identities=20% Similarity=0.384 Sum_probs=184.0
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
.++++|..+.++-+|..... ..+..|.+|..+|.+|.|+++..+|++|+.+|+|++||+++.+
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp-----~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk------------ 103 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKP-----NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK------------ 103 (825)
T ss_pred eeeccCCCceeeccccccCC-----chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh------------
Confidence 55788999999999987632 2333478999999999999999999999999999999996433
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cE
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~ 580 (755)
.+++|.||...+..+.|+|- .+
T Consensus 104 ---------------------------------------------------------~vrtLtgh~~~~~sv~f~P~~~~ 126 (825)
T KOG0267|consen 104 ---------------------------------------------------------IVRTLTGHLLNITSVDFHPYGEF 126 (825)
T ss_pred ---------------------------------------------------------hhhhhhccccCcceeeeccceEE
Confidence 23456789999999999998 66
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-CCCCEEEEEEc
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYT 658 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-~~~~VtsvafS 658 (755)
+++|+.|..+++||++...|.+.+. |...|.++.|+| +|+++++++.|.+++|||+..+++...+. |...+.++.|+
T Consensus 127 ~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h 205 (825)
T KOG0267|consen 127 FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH 205 (825)
T ss_pred eccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccC
Confidence 7899999999999999999999997 999999999999 99999999999999999999999885554 77899999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 659 PdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
|..-.++.|+.|+++++||+++...+... +.....|.+++|.|++. .+++|.
T Consensus 206 p~e~Lla~Gs~d~tv~f~dletfe~I~s~---------~~~~~~v~~~~fn~~~~-~~~~G~ 257 (825)
T KOG0267|consen 206 PLEVLLAPGSSDRTVRFWDLETFEVISSG---------KPETDGVRSLAFNPDGK-IVLSGE 257 (825)
T ss_pred chhhhhccCCCCceeeeeccceeEEeecc---------CCccCCceeeeecCCce-eeecCc
Confidence 99989999999999999999988777543 23467899999999996 455443
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=177.58 Aligned_cols=272 Identities=18% Similarity=0.235 Sum_probs=208.1
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCC-EEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~-~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
..+++++..|+.+++|.+..+... ++|.+.--.-+|.+.+|.|+|. .+++++.......||+.+.+...--. .
T Consensus 225 ~plllvaG~d~~lrifqvDGk~N~---~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~---~ 298 (514)
T KOG2055|consen 225 APLLLVAGLDGTLRIFQVDGKVNP---KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP---P 298 (514)
T ss_pred CceEEEecCCCcEEEEEecCccCh---hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccC---C
Confidence 345778889999999988765544 3455666678999999999999 99999999999999998776432211 1
Q ss_pred cCc-cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC
Q 004404 500 DGH-LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (755)
Q Consensus 500 ~~~-~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd 578 (755)
.++ ...+.....++++.+++.....++|.. +-..+.+.+..++ -.+.|.+++|+.+
T Consensus 299 ~g~e~~~~e~FeVShd~~fia~~G~~G~I~l----------------------LhakT~eli~s~K-ieG~v~~~~fsSd 355 (514)
T KOG2055|consen 299 YGVEEKSMERFEVSHDSNFIAIAGNNGHIHL----------------------LHAKTKELITSFK-IEGVVSDFTFSSD 355 (514)
T ss_pred CCcccchhheeEecCCCCeEEEcccCceEEe----------------------ehhhhhhhhheee-eccEEeeEEEecC
Confidence 222 234556778888888888877777632 1122334444444 3467999999987
Q ss_pred -cEEEEEeCCCcEEEEECCCCcEEEEeecCCce--EEEEEeeCCCcEEEEEECCCcEEEEECCCC------cEE-EeccC
Q 004404 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYV--TCIQFNPVDDRYFISGSLDAKVRIWSIPER------QVV-DWNDL 648 (755)
Q Consensus 579 -~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~V--tsVafsP~dg~~LaSgS~DgtVrIWDl~t~------~~v-~~~~~ 648 (755)
..|++++.+|.|.+||++...+++.+...+.| +.+|.++ ++.|||+|+..|.|.|||..+. +++ .+...
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL 434 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL 434 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhh
Confidence 67888889999999999999999999855554 5677778 8999999999999999997542 333 33445
Q ss_pred CCCEEEEEEccCCCEEEEEEC--CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEE
Q 004404 649 HEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (755)
Q Consensus 649 ~~~VtsvafSPdG~~LasGs~--DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~Ir 726 (755)
...|+++.|+||++.||.++. +..+++-.+.+......++.. ...-+.|++++|+|.+. +|++|..+|+|.
T Consensus 435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~------n~~vg~vtc~aFSP~sG-~lAvGNe~grv~ 507 (514)
T KOG2055|consen 435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS------NTKVGHVTCMAFSPNSG-YLAVGNEAGRVH 507 (514)
T ss_pred heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC------CCcccceEEEEecCCCc-eEEeecCCCcee
Confidence 568999999999999998775 677999999887776665432 24456799999999887 899999999999
Q ss_pred EEE
Q 004404 727 VVD 729 (755)
Q Consensus 727 VWD 729 (755)
+|.
T Consensus 508 l~k 510 (514)
T KOG2055|consen 508 LFK 510 (514)
T ss_pred eEe
Confidence 996
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.3e-17 Score=187.74 Aligned_cols=259 Identities=14% Similarity=0.174 Sum_probs=199.3
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
.++++...++.|++|+....+-.+ ..+.-|...|.+++-. +.+|++|+.+++|.+|.+.+++...-+ ..
T Consensus 26 efi~tcgsdg~ir~~~~~sd~e~P----~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL-----~R 94 (933)
T KOG1274|consen 26 EFICTCGSDGDIRKWKTNSDEEEP----ETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTIL-----AR 94 (933)
T ss_pred CEEEEecCCCceEEeecCCcccCC----chhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcccee-----ee
Confidence 377888899999999987663221 1223388888888865 559999999999999999877644332 33
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cE
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~ 580 (755)
..-++..++++.+|.+++.++.+..+.. +-.........+.+|.++|.+|.|+|+ .+
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~----------------------~~~~D~s~~~~lrgh~apVl~l~~~p~~~f 152 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKL----------------------LNLDDSSQEKVLRGHDAPVLQLSYDPKGNF 152 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEE----------------------EeccccchheeecccCCceeeeeEcCCCCE
Confidence 3567788999999999999988877632 122234567789999999999999998 78
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEee---------cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec---cC
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFS---------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN---DL 648 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~---------h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~---~~ 648 (755)
||+.+.||+|++||+.++.+..++. ....+..++|+| ++..|+....|+.|++|+..++.....+ .+
T Consensus 153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ 231 (933)
T KOG1274|consen 153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS 231 (933)
T ss_pred EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeeccccc
Confidence 9999999999999999998887764 245678899999 8777888888999999999988765322 23
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEE
Q 004404 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 649 ~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVW 728 (755)
...+..++|+|+|+|||+++.+|.|.|||+++... + .....|++++|.|++. .+-....-|..-+|
T Consensus 232 ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~------------~~~~~Vc~~aw~p~~n-~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 232 SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H------------EFKRAVCCEAWKPNAN-AITLITALGTLGVS 297 (933)
T ss_pred ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c------------cccceeEEEecCCCCC-eeEEEeeccccccC
Confidence 34599999999999999999999999999998211 1 2346799999999987 34444444444444
No 135
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=7.1e-19 Score=191.56 Aligned_cols=317 Identities=17% Similarity=0.218 Sum_probs=216.5
Q ss_pred HHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccc----cCccccCC
Q 004404 333 EMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERR----SSDERDTS 405 (755)
Q Consensus 333 ~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~----~~~~~~~~ 405 (755)
..+.||+++|++|...+. +++|++|+|+| +|-+.+|..+++.. .-..|++|++.+.+...-. ..+.....
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvr-iWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVR-IWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEE-EEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 357999999999888776 99999999999 99999998777654 1124777777765432110 00000000
Q ss_pred ccCCCceeeeeecCCCcEEEEe----CCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECC---C
Q 004404 406 SEKGGRRSSSATDDSQDVSFHG----QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---C 478 (755)
Q Consensus 406 ~~~g~~~~vs~~~ds~~~l~sg----~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~D---G 478 (755)
...|....+ ......++.+ ..+..|..|.....+....-.+. .-.|..+|..|.|+..|.||+|...+ .
T Consensus 471 p~~G~~~e~---~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~-~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 471 PIFGDRLEV---GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI-VIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred ccccchhhh---cchhhhhhcCCCccCCcccceeechhhhhhhccceEE-EEecCCccceeeeecCCceEEEeccCCCcc
Confidence 000000000 0011222222 34567788876643322222122 23599999999999999999998664 3
Q ss_pred cEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCC
Q 004404 479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK 558 (755)
Q Consensus 479 tVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k 558 (755)
.|.|.++......
T Consensus 547 ~VliHQLSK~~sQ------------------------------------------------------------------- 559 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQ------------------------------------------------------------------- 559 (733)
T ss_pred eEEEEeccccccc-------------------------------------------------------------------
Confidence 5666665332211
Q ss_pred ceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEE
Q 004404 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636 (755)
Q Consensus 559 ~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWD 636 (755)
..|.--.+.|.++.|+|. -+|++++. ..|+|||+.....++.+. ....|..++.+| .|..|+.|+.|+++..||
T Consensus 560 --~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfD 635 (733)
T KOG0650|consen 560 --SPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFD 635 (733)
T ss_pred --CchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEE
Confidence 112223355889999998 55666655 789999999887776664 677899999999 899999999999999999
Q ss_pred CCCC--cEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCC----eEEEEEcc
Q 004404 637 IPER--QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK----ITGFQFAP 710 (755)
Q Consensus 637 l~t~--~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~----Vtsl~fsP 710 (755)
+.-. ....+..|...+++|+|++.-.++++|+.||++.||.-.--.-+..-++-++.+.+.+|... |..+.|+|
T Consensus 636 ldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP 715 (733)
T KOG0650|consen 636 LDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP 715 (733)
T ss_pred cccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence 8654 33355566789999999999999999999999998864322111111222344667788776 99999999
Q ss_pred CCCeEEEEEECCCcEEEE
Q 004404 711 GSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 711 dg~~~L~sgs~Dg~IrVW 728 (755)
..+ +|+++++||+||+|
T Consensus 716 ~qp-WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 716 RQP-WLFSAGADGTIRLF 732 (733)
T ss_pred CCc-eEEecCCCceEEee
Confidence 987 89999999999998
No 136
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=5.4e-17 Score=165.07 Aligned_cols=257 Identities=16% Similarity=0.212 Sum_probs=190.7
Q ss_pred cEEEEeCCCcEEEEeeCCCC-cccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 422 DVSFHGQERVRVRQYGKSCK-DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~-~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
.++..|+-|++||+|+++.. .+. .+....|.++|.+++|+.||..+++|+.|+.+++||+.+++... + .
T Consensus 41 ~~~~A~SWD~tVR~wevq~~g~~~----~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~-v-----~ 110 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNSGQLV----PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ-V-----A 110 (347)
T ss_pred ceEEecccCCceEEEEEecCCccc----chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee-e-----e
Confidence 45679999999999999753 222 24456799999999999999999999999999999999985433 2 4
Q ss_pred CccccEEEeecCCCCc--eeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC
Q 004404 501 GHLNMLLLANGSPEPT--SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~--~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd 578 (755)
.|..++..+.|-+... .|++++.+..+..|..... .++.++. -.+.|+++..- .
T Consensus 111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~----------------------~pv~t~~-LPeRvYa~Dv~-~ 166 (347)
T KOG0647|consen 111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS----------------------NPVATLQ-LPERVYAADVL-Y 166 (347)
T ss_pred ecccceeEEEEecCCCcceeEecccccceeecccCCC----------------------Ceeeeee-ccceeeehhcc-C
Confidence 5667777777766654 8899999988865544422 2333322 12334444321 2
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEE-Eee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE---EeccCC---
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLK-IFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV---DWNDLH--- 649 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~-~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v---~~~~~~--- 649 (755)
.+++++..++.|.+|+++.+.... ... .+-.+.||+..+ +.+.++.|+.+|.+-|..+..+... .+.-|.
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~ 245 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTN 245 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCC
Confidence 578889999999999997664332 222 455789999999 8888899999999999998875221 222222
Q ss_pred ------CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC
Q 004404 650 ------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (755)
Q Consensus 650 ------~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D 722 (755)
..|++|+|+|....|++++.||+..+||-.....+... ..|..+|++..|+.+|..+..+.+.|
T Consensus 246 ~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s---------~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS---------ETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc---------CcCCCccceeEecCCCCEEEEEeecc
Confidence 25889999998889999999999999998876665543 37899999999999998555555666
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.78 E-value=4.6e-17 Score=164.71 Aligned_cols=268 Identities=19% Similarity=0.294 Sum_probs=194.3
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcc---cce---eee----eEeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDL---TAL---YKC----QEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESE 489 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~---~~~---~~~----q~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~ 489 (755)
..++++|..|+.|.+||++.... ..+ .++ +.-.+|+-+|.++.|-| |.-.+.+++-|.+++|||+.+.+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 35689999999999999976441 111 111 22247888999999999 55688899999999999998877
Q ss_pred eeeeeecccccCccccEEEeecCCCC---ceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEecc
Q 004404 490 RKGELLEKQEDGHLNMLLLANGSPEP---TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG 565 (755)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~s~dg---~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~g 565 (755)
....+. ....+...+++|-. .+++++..+..+ .+.++ ++..-+.+.|
T Consensus 136 ~a~~F~------me~~VYshamSp~a~sHcLiA~gtr~~~V-----------------------rLCDi~SGs~sH~LsG 186 (397)
T KOG4283|consen 136 EAVDFK------MEGKVYSHAMSPMAMSHCLIAAGTRDVQV-----------------------RLCDIASGSFSHTLSG 186 (397)
T ss_pred eeEEee------cCceeehhhcChhhhcceEEEEecCCCcE-----------------------EEEeccCCcceeeecc
Confidence 655542 23455666666643 345555444444 22232 5677889999
Q ss_pred CCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCC-cEEEEe---------------ecCCceEEEEEeeCCCcEEEEEE
Q 004404 566 HLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK-TCLKIF---------------SHSDYVTCIQFNPVDDRYFISGS 627 (755)
Q Consensus 566 H~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~-~~~~~~---------------~h~~~VtsVafsP~dg~~LaSgS 627 (755)
|.+.|.++.|+|. -.|++|+.||.|++||++.. .|..++ .|.+.|+.++|.. ++.++++++
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~g 265 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCG 265 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhcc
Confidence 9999999999997 34889999999999999854 344333 2677899999999 999999999
Q ss_pred CCCcEEEEECCCCcEEEe----ccCC----CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCC
Q 004404 628 LDAKVRIWSIPERQVVDW----NDLH----EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSH 699 (755)
Q Consensus 628 ~DgtVrIWDl~t~~~v~~----~~~~----~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h 699 (755)
.|..+++|+...+.-... ..++ -.+. +. +-+...++---.++.+.++.+-.+..+..+ ..|
T Consensus 266 td~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l---------~~h 334 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL---------STH 334 (397)
T ss_pred CccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee---------ecc
Confidence 999999999987652210 0111 1111 22 223334444445689999999998887654 478
Q ss_pred CCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 700 QRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 700 ~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
...|.+.+|-|+-+ ...++..|+.|..|-.
T Consensus 335 ~k~i~c~~~~~~fq-~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 LKRINCAAYRPDFE-QCFTGDMNGNIYMWSP 364 (397)
T ss_pred cceeeEEeecCchh-hhhccccCCccccccc
Confidence 88999999999877 6899999999999973
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.78 E-value=3.7e-17 Score=165.39 Aligned_cols=271 Identities=17% Similarity=0.243 Sum_probs=187.9
Q ss_pred ecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCce--eee--------eecccccCccccEEEeecCCC-Cceecc
Q 004404 453 QAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESER--KGE--------LLEKQEDGHLNMLLLANGSPE-PTSLSP 520 (755)
Q Consensus 453 ~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~--~~~--------l~~~~~~~~~~~v~~v~~s~d-g~~l~~ 520 (755)
..|.+.|+++.+.+ .|+|+++|+.||.|.|||++.... ... +....+.+|...|..+.|-|- .-++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 36999999999988 789999999999999999975431 111 112334667777777777774 445555
Q ss_pred ccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC----cEEEEEeCCCcEEEEECC
Q 004404 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS----QHLLSSSMDKTVRLWHLS 596 (755)
Q Consensus 521 ~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd----~~LaSgs~DgtVrLWDl~ 596 (755)
++.+..+ ++|+...-+......-.+.|+.-+|+|= .++++|..|-.|+|-|+.
T Consensus 120 sSFDhtl-----------------------KVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 120 SSFDHTL-----------------------KVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccccceE-----------------------EEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 5566655 4555433333332334566888888883 568899999999999999
Q ss_pred CCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC-cEE--------------E-eccCCCCEEEEEEcc
Q 004404 597 SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVV--------------D-WNDLHEMVTAACYTP 659 (755)
Q Consensus 597 t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~-~~v--------------~-~~~~~~~VtsvafSP 659 (755)
.|.+.+++. |.+.|.+|.|+|...-.|++|+.||.|++||++.- -+. + -..|.+.|..++|+.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 999999997 99999999999966667889999999999999753 111 1 223446899999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEe
Q 004404 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKF 737 (755)
Q Consensus 660 dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~ 737 (755)
+|.++++.+.|..+++|+..+|......-.+....+. .|. .++ +. +-+.. .++---.++.+.++. .+..+..+
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~-~~~-~~-~~~s~-vfv~~p~~~~lall~~~sgs~ir~l 331 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSF-AVH-IQ-SMDSD-VFVLFPNDGSLALLNLLEGSFVRRL 331 (397)
T ss_pred cchhhhhccCccceEEeecccCccccccccccccccc-ccc-eEE-Ee-ecccc-eEEEEecCCeEEEEEccCceEEEee
Confidence 9999999999999999999988754332111111111 111 111 22 22222 333334557777777 46777778
Q ss_pred ecCCccEEEEEEEE
Q 004404 738 KGENYVQYMVCIVL 751 (755)
Q Consensus 738 ~GH~~~V~sv~fs~ 751 (755)
++|-..+.+..+-+
T Consensus 332 ~~h~k~i~c~~~~~ 345 (397)
T KOG4283|consen 332 STHLKRINCAAYRP 345 (397)
T ss_pred ecccceeeEEeecC
Confidence 88865666655543
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=4.8e-18 Score=181.48 Aligned_cols=252 Identities=16% Similarity=0.206 Sum_probs=191.9
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
.++++...|..|++|.+..+ +........+.+. .-.||+......|+++||..++|+|||+......+. ..+
T Consensus 48 lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~-----lkd 119 (673)
T KOG4378|consen 48 LVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF-----LKD 119 (673)
T ss_pred EEEeecCCceeEEEecccCC-CCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh-----ccC
Confidence 34567788999999987644 3333333333333 334454444558999999999999999974332222 478
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccC-CCCEEEEEecCC--
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH-LDDVLDLSWSKS-- 578 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH-~~~V~~L~~spd-- 578 (755)
|...+.++.+.....++++...++.+.+.... ++....+|... ...|.-|.|+|.
T Consensus 120 h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~----------------------t~~~tt~f~~~sgqsvRll~ys~skr 177 (673)
T KOG4378|consen 120 HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK----------------------TKQKTTTFTIDSGQSVRLLRYSPSKR 177 (673)
T ss_pred CcceeEEEEecCCcceeEEeccCCcEEEEecc----------------------cCccccceecCCCCeEEEeecccccc
Confidence 88999999999888888888777766332211 11222233333 234568899997
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEE
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAAC 656 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~Vtsva 656 (755)
-+|.+++.+|.|.|||+....++..+. |..+...|+|+|.+..+|++.+.|.+|.+||+........+....+..+++
T Consensus 178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstva 257 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVA 257 (673)
T ss_pred eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceee
Confidence 557899999999999999888877774 999999999999888999999999999999999988887777888999999
Q ss_pred EccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccC
Q 004404 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (755)
Q Consensus 657 fSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd 711 (755)
|+++|.+|++|...|.|+.||++..+... ..+..|...|++++|-|.
T Consensus 258 f~~~G~~L~aG~s~G~~i~YD~R~~k~Pv--------~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 258 FSECGTYLCAGNSKGELIAYDMRSTKAPV--------AVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ecCCceEEEeecCCceEEEEecccCCCCc--------eEeeecccceeEEEeeec
Confidence 99999999999999999999999765432 224589999999999875
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.1e-17 Score=182.38 Aligned_cols=284 Identities=17% Similarity=0.288 Sum_probs=208.5
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCC--ceeccccCCCce
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP--TSLSPKHLDNHL 527 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg--~~l~~~s~d~~i 527 (755)
..+.||++.|.+|...|.|.+||+|+.||+|+||.+.++.++..+.. ...|.+++|+|.+ .+|+++.....+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~------d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF------DSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee------cceeEEEEecCCCCceeEEEEecCceE
Confidence 45789999999999999999999999999999999999999887642 2478889999874 344444333322
Q ss_pred eeec-ccccccc------c-cc-ccCcccccceeeecC-----CCceEEeccCCCCEEEEEecCC-cEEEEEeCC---Cc
Q 004404 528 EKKR-RGRSINR------K-SL-SLDHMVVPETVFALS-----DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KT 589 (755)
Q Consensus 528 ~~~~-~~~~~~~------~-s~-s~d~~~~~~~v~~~s-----~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~D---gt 589 (755)
.... .+..+.. . .. ...........|.-. .+-++..-.|...|..|.|+.. .+|++...+ ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 1111 1100000 0 00 000000001233221 2235566678999999999987 677766553 67
Q ss_pred EEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEE
Q 004404 590 VRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVG 667 (755)
Q Consensus 590 VrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasG 667 (755)
|.|.++.......-|. ..+.|.++.|+| ...+|+.++ -..|+|||+..+.++ .+...-.+|..++++|.|..|++|
T Consensus 548 VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEEecccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 9999998877776774 778899999999 667777666 568999999887766 455566789999999999999999
Q ss_pred ECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC-----------CcceEE
Q 004404 668 SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG-----------IDLVHK 736 (755)
Q Consensus 668 s~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~-----------~~ll~~ 736 (755)
+.|+.+..||+.-..... +.++.|...|++|+|++.-+ ++++|+.|+++.|+-+ --.+.+
T Consensus 626 s~d~k~~WfDldlsskPy--------k~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPY--------KTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred cCCCeeEEEEcccCcchh--------HHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 999999999998654433 33568999999999999887 8999999999999862 235688
Q ss_pred eecCCcc----EEEEEEE
Q 004404 737 FKGENYV----QYMVCIV 750 (755)
Q Consensus 737 ~~GH~~~----V~sv~fs 750 (755)
++||... |..+.|-
T Consensus 697 L~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWH 714 (733)
T ss_pred ccCceeecccceEeeccc
Confidence 9999876 7777764
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.4e-17 Score=176.67 Aligned_cols=232 Identities=17% Similarity=0.227 Sum_probs=181.4
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeE------------------eecccCCEEEEEEcCCC-CEEEEEECCCcEE
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQE------------------IQAHNGSIWSIKFSLDG-RYLASAGEDCVIH 481 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~------------------l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVr 481 (755)
.++++.|+-+-.|.|||+.-.+ ..+++.. -++|+++|.+++|+.+- ..||+||.|.+|+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d--~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVD--AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred cceEEEeccCceeEEecccccc--ccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 3578899999999999985422 1111111 23799999999998854 4899999999999
Q ss_pred EEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceE
Q 004404 482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC 561 (755)
Q Consensus 482 VWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~ 561 (755)
+||+.++++. .
T Consensus 270 lWD~~~g~p~---------------------------------------------------------------------~ 280 (463)
T KOG0270|consen 270 LWDVDTGKPK---------------------------------------------------------------------S 280 (463)
T ss_pred EEEcCCCCcc---------------------------------------------------------------------e
Confidence 9999776533 3
Q ss_pred EeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCC-cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECC
Q 004404 562 SFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (755)
Q Consensus 562 ~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~-~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~ 638 (755)
.+..|.+.|.++.|+|. ..|++|+.|++|.|.|.+.. ..-..+...+.|-.++|+|.....|+++..||+|+-+|++
T Consensus 281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 34568899999999997 78999999999999999853 3334456788999999999777899999999999999998
Q ss_pred CC-cEE-EeccCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeE
Q 004404 639 ER-QVV-DWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (755)
Q Consensus 639 t~-~~v-~~~~~~~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~ 715 (755)
.. +++ ....|...|.++++++.- .+|++++.|+.|++|++..........-. -.-+...++++.|+-...
T Consensus 361 ~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~-------~~~~rl~c~~~~~~~a~~ 433 (463)
T KOG0270|consen 361 NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS-------FKLGRLHCFALDPDVAFT 433 (463)
T ss_pred CCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc-------ccccceeecccCCCcceE
Confidence 75 555 566788899999999855 56778999999999999865543321100 112336777888988778
Q ss_pred EEEEECCCcEEEEEC
Q 004404 716 VLVTSADSRIRVVDG 730 (755)
Q Consensus 716 L~sgs~Dg~IrVWD~ 730 (755)
|+.|+..+.++|||.
T Consensus 434 la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDI 448 (463)
T ss_pred EEecCccceEEEeec
Confidence 888999899999994
No 142
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3e-17 Score=171.73 Aligned_cols=208 Identities=23% Similarity=0.341 Sum_probs=167.5
Q ss_pred eecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeee
Q 004404 452 IQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 452 l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
+.||+++|..++|+| +...|||||+|.+|.||++-.+.....+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------------------------------ 120 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------------------------------ 120 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------------------------------
Confidence 569999999999999 5678999999999999998554322221
Q ss_pred cccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEeecCC
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHSD 608 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~ 608 (755)
.+++..|.||+..|--+.|+|. +.|++++.|.+|.+|++.+++.+.++.|.+
T Consensus 121 --------------------------tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd 174 (472)
T KOG0303|consen 121 --------------------------TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPD 174 (472)
T ss_pred --------------------------ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCC
Confidence 2577889999999999999997 889999999999999999999999999999
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec-cCCC-CEEEEEEccCCCEEEEEE---CCCcEEEEECCCCee
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHE-MVTAACYTPDGQGALVGS---YKGSCHLYNTSENKL 683 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~-~~~~-~VtsvafSPdG~~LasGs---~DG~I~lwDl~~~~~ 683 (755)
.|+++.|+- ||.+|++.+.|.+|||||.++++++... .|.+ ....+.|-.+|..+-+|- .+..+-|||..+...
T Consensus 175 ~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 175 MVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred eEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccC
Confidence 999999999 9999999999999999999999998655 3332 455677888888555553 367899999876544
Q ss_pred eeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
...++ .+ .....|.---|.|+.+...++|-.|+.||.|.
T Consensus 254 P~~~~------el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 254 PIALQ------EL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred cceeE------Ee-ccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 32211 11 23455665567888876667777899999999
No 143
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.6e-16 Score=173.24 Aligned_cols=265 Identities=13% Similarity=0.157 Sum_probs=205.6
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
++-+.--..+|.+|+|+.+.+.||.+-.||.|-||++...-....... .+....+-.++|.+.++++..+..+...
T Consensus 18 crf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~---g~~drsIE~L~W~e~~RLFS~g~sg~i~- 93 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIH---GPEDRSIESLAWAEGGRLFSSGLSGSIT- 93 (691)
T ss_pred EEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEe---cCCCCceeeEEEccCCeEEeecCCceEE-
Confidence 333444567899999999999999999999999999987654444332 2344566778888777777665433322
Q ss_pred eecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEe--e
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF--S 605 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~--~ 605 (755)
.+...+.+++..+....+.|++++.+|. ..++.|+.||.++.++...+...... .
T Consensus 94 ----------------------EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 94 ----------------------EWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM 151 (691)
T ss_pred ----------------------EEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc
Confidence 2222356778888888999999999997 67888999998888888877655433 3
Q ss_pred -cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe-----ccC----CCCEEEEEEccCCCEEEEEECCCcEEE
Q 004404 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-----NDL----HEMVTAACYTPDGQGALVGSYKGSCHL 675 (755)
Q Consensus 606 -h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~-----~~~----~~~VtsvafSPdG~~LasGs~DG~I~l 675 (755)
.++.|.++.|+| ++..|+.|+.||.|++||..+++.+.. ... ...|+++.|-.++ .|++|...|+|.+
T Consensus 152 rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~F 229 (691)
T KOG2048|consen 152 RQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTF 229 (691)
T ss_pred cccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEE
Confidence 668999999999 899999999999999999999876652 222 2357888888665 8999999999999
Q ss_pred EECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE-CC-----cceEEeecCCccEEEEEE
Q 004404 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-GI-----DLVHKFKGENYVQYMVCI 749 (755)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD-~~-----~ll~~~~GH~~~V~sv~f 749 (755)
||...+.+.+.. ..|...|.+++..+++. ++++++.|++|..|. .+ ........|.+.|.+++.
T Consensus 230 Wd~~~gTLiqS~---------~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av 299 (691)
T KOG2048|consen 230 WDSIFGTLIQSH---------SCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAV 299 (691)
T ss_pred EcccCcchhhhh---------hhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeee
Confidence 999999988764 37899999999999987 899999999998887 21 134456678888887776
Q ss_pred EE
Q 004404 750 VL 751 (755)
Q Consensus 750 s~ 751 (755)
..
T Consensus 300 ~~ 301 (691)
T KOG2048|consen 300 IE 301 (691)
T ss_pred ec
Confidence 54
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.5e-16 Score=162.26 Aligned_cols=227 Identities=19% Similarity=0.324 Sum_probs=169.0
Q ss_pred ecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecc
Q 004404 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (755)
Q Consensus 453 ~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~ 532 (755)
.+|.+-|.++.|.+.|+.+|||+.|++|+|||.......
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~----------------------------------------- 48 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT----------------------------------------- 48 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc-----------------------------------------
Confidence 479999999999999999999999999999997432211
Q ss_pred cccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCC---------CcE
Q 004404 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSS---------KTC 600 (755)
Q Consensus 533 ~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd---~~LaSgs~DgtVrLWDl~t---------~~~ 600 (755)
.......+.|.+.|..+.|.+. +.+++++.|++|.||.-.. ...
T Consensus 49 ------------------------W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~ 104 (361)
T KOG2445|consen 49 ------------------------WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR 104 (361)
T ss_pred ------------------------eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEE
Confidence 1233456789999999999764 6799999999999997521 112
Q ss_pred EEEee-cCCceEEEEEeeC-CCcEEEEEECCCcEEEEECCCCcEE-Ee-----c--------cCCCCEEEEEEccC---C
Q 004404 601 LKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVV-DW-----N--------DLHEMVTAACYTPD---G 661 (755)
Q Consensus 601 ~~~~~-h~~~VtsVafsP~-dg~~LaSgS~DgtVrIWDl~t~~~v-~~-----~--------~~~~~VtsvafSPd---G 661 (755)
..++. ....|+.|+|.|. -|-.|++++.||+||||+..+..-+ .| + .++....++.|+|. .
T Consensus 105 ~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~ 184 (361)
T KOG2445|consen 105 RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE 184 (361)
T ss_pred EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccC
Confidence 23333 6788999999993 3568999999999999987653211 11 1 24457789999983 4
Q ss_pred CEEEEEECC-----CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCC---eEEEEEECCCcEEEEECC--
Q 004404 662 QGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS---SEVLVTSADSRIRVVDGI-- 731 (755)
Q Consensus 662 ~~LasGs~D-----G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~---~~L~sgs~Dg~IrVWD~~-- 731 (755)
++||+|+.+ +.++||....+..... ....+.+|..+|++|+|.|+-. .+|++++.|| |+||..+
T Consensus 185 p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~-----kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~ 258 (361)
T KOG2445|consen 185 PLIAVGSDEDAPHLNKVKIYEYNENGRKWL-----KVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVA 258 (361)
T ss_pred ceEEEEcccCCccccceEEEEecCCcceee-----eehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeec
Confidence 789998876 5788887765542211 1123458999999999999732 3788999999 9999832
Q ss_pred --------------------cceEEeecCCccEEEEEEE
Q 004404 732 --------------------DLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 732 --------------------~ll~~~~GH~~~V~sv~fs 750 (755)
+.+..|.+|+..|+.+.+.
T Consensus 259 ~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 259 RSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred cchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe
Confidence 2456688999999998874
No 145
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.75 E-value=8.5e-16 Score=164.98 Aligned_cols=281 Identities=13% Similarity=0.184 Sum_probs=210.0
Q ss_pred EEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC-CCEEEEEECCCcEEEEeCcCCceeeeeecccccCcc
Q 004404 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (755)
Q Consensus 425 ~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd-g~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~ 503 (755)
..-+.+..+.+|+++.+..... .+.-+..|...+|+|. .++++|++. +.+.+|+...+......-... ....
T Consensus 174 vD~s~~h~lSVWdWqk~~~~~~-----vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fe-k~ek 246 (626)
T KOG2106|consen 174 VDDSNPHMLSVWDWQKKAKLGP-----VKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFE-KREK 246 (626)
T ss_pred ecCCCccccchhhchhhhccCc-----ceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccc-cccc
Confidence 4556777888999986664433 3356678999999994 557777765 789999998876554432222 2222
Q ss_pred ccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEE
Q 004404 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLS 583 (755)
Q Consensus 504 ~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaS 583 (755)
..+.++.|.+++..+.. +.++.+.+|..+ ..+..+....|.+.|.+|+...++.|++
T Consensus 247 k~Vl~v~F~engdviTg-DS~G~i~Iw~~~----------------------~~~~~k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITG-DSGGNILIWSKG----------------------TNRISKQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred eEEEEEEEcCCCCEEee-cCCceEEEEeCC----------------------CceEEeEeeecCCceEEEEEecCccEee
Confidence 77889999999987754 455666444332 1123344458999999999999999999
Q ss_pred EeCCCcEEEEECCC-----------------------------------------CcEEEEeecCCceEEEEEeeCCCcE
Q 004404 584 SSMDKTVRLWHLSS-----------------------------------------KTCLKIFSHSDYVTCIQFNPVDDRY 622 (755)
Q Consensus 584 gs~DgtVrLWDl~t-----------------------------------------~~~~~~~~h~~~VtsVafsP~dg~~ 622 (755)
|+.|+.|.+||-.- +-.+..+.|.+....++.+| ..+.
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q 382 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQ 382 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-Chhh
Confidence 99999999998320 01112334788899999999 8899
Q ss_pred EEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCC
Q 004404 623 FISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (755)
Q Consensus 623 LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (755)
|++++.|+.++||+ ..++.-......++.++.|+|.| .+|+|+..|...+.|.++..++..- .-..+
T Consensus 383 ~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~----------~d~~~ 449 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH----------TDNEQ 449 (626)
T ss_pred eeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE----------ecCCc
Confidence 99999999999999 56666666677899999999999 9999999999999999996665531 22678
Q ss_pred eEEEEEccCCCeEEEEEECCCcEEEEE---CCcceEEeecCC-ccEEEEEEE
Q 004404 703 ITGFQFAPGSSSEVLVTSADSRIRVVD---GIDLVHKFKGEN-YVQYMVCIV 750 (755)
Q Consensus 703 Vtsl~fsPdg~~~L~sgs~Dg~IrVWD---~~~ll~~~~GH~-~~V~sv~fs 750 (755)
++.++|+|+|. +|++|+.|+.|+||- .+..+.++.-|+ ..+..+.|+
T Consensus 450 ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 450 LSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred eEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 99999999998 899999999999997 344444443333 457777664
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.75 E-value=7.9e-17 Score=172.26 Aligned_cols=285 Identities=11% Similarity=0.124 Sum_probs=211.4
Q ss_pred EeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCC-EEEEEECCCcEEEEeCcCCceeeeeeccc-ccCcc
Q 004404 426 HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQ-EDGHL 503 (755)
Q Consensus 426 sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~-~LaTgs~DGtVrVWdl~t~~~~~~l~~~~-~~~~~ 503 (755)
..+...++++||....+....+..++- .-.|.++.|+.... .+++.+.|..|++|.-... ..+++... ..+.
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~---~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k~~gd- 80 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTA---EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRKLTGD- 80 (673)
T ss_pred eeccCCceEEeecccccCccccccCCC---CCcceeeeccccceEEEeecCCceeEEEecccCC--CCccceeeccccc-
Confidence 345566788899887766665543321 12399999987664 2334456889999975322 22221111 1111
Q ss_pred ccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCce-EEeccCCCCEEEEEecCC-cEE
Q 004404 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI-CSFQGHLDDVLDLSWSKS-QHL 581 (755)
Q Consensus 504 ~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i-~~l~gH~~~V~~L~~spd-~~L 581 (755)
..+|++......+++++...+.+ .+|++..+.+ +.+++|+..|+++.++-. .+|
T Consensus 81 -~~~Cv~~~s~S~y~~sgG~~~~V-----------------------kiwdl~~kl~hr~lkdh~stvt~v~YN~~Deyi 136 (673)
T KOG4378|consen 81 -NAFCVACASQSLYEISGGQSGCV-----------------------KIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYI 136 (673)
T ss_pred -hHHHHhhhhcceeeeccCcCcee-----------------------eehhhHHHHHhhhccCCcceeEEEEecCCccee
Confidence 22333444444667777666666 5666655544 567899999999999865 899
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecC--CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-E-eccCCCCEEEEEE
Q 004404 582 LSSSMDKTVRLWHLSSKTCLKIFSHS--DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-D-WNDLHEMVTAACY 657 (755)
Q Consensus 582 aSgs~DgtVrLWDl~t~~~~~~~~h~--~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~-~~~~~~~Vtsvaf 657 (755)
++++..|.|.|..+.++....+|+|. ..|.-+.|+|....+|.+++.+|.|.+||+....++ . ...|..+...+||
T Consensus 137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicf 216 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICF 216 (673)
T ss_pred EEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCccee
Confidence 99999999999999999988899854 456689999955567788999999999999887665 2 3456678899999
Q ss_pred ccCC-CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE---CCcc
Q 004404 658 TPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD---GIDL 733 (755)
Q Consensus 658 SPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD---~~~l 733 (755)
+|.. .+|++.+.|..|++||+........+ ....+.+.++|.++|- +|++|...|.|..|| ...+
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l----------~y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRL----------TYSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred cCCccceEEEecccceEEEeeccccccccee----------eecCCcceeeecCCce-EEEeecCCceEEEEecccCCCC
Confidence 9955 67777899999999999976665543 3356789999999996 899999999999999 4778
Q ss_pred eEEeecCCccEEEEEEEE
Q 004404 734 VHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 734 l~~~~GH~~~V~sv~fs~ 751 (755)
+..+..|...|.+++|-+
T Consensus 286 v~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 286 VAVRSAHDASVTRVAFQP 303 (673)
T ss_pred ceEeeecccceeEEEeee
Confidence 999999999999999965
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.8e-17 Score=175.99 Aligned_cols=158 Identities=22% Similarity=0.371 Sum_probs=137.9
Q ss_pred eccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC
Q 004404 563 FQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (755)
Q Consensus 563 l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t 639 (755)
-.+|+..|..|+|+.. +.|++||.|.+|++||+.+++|..++. |...|.+++|+|....+|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 3579999999999886 789999999999999999999999998 9999999999998889999999999999999985
Q ss_pred CcE-EEeccCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCe-eeeccccccccccccCCCCCeEEEEEccCCCeEE
Q 004404 640 RQV-VDWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENK-LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (755)
Q Consensus 640 ~~~-v~~~~~~~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~-~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L 716 (755)
... -......+.|-.++|.|.. ..+++++.||.|+-+|++... ++.+ ++.|...|.+|.+++.-+.++
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt---------~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT---------LKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE---------EEeccCCcceEEecCCCCcce
Confidence 322 2334456789999999966 567778899999999999874 4433 458999999999999888899
Q ss_pred EEEECCCcEEEEE
Q 004404 717 LVTSADSRIRVVD 729 (755)
Q Consensus 717 ~sgs~Dg~IrVWD 729 (755)
++++.|+.|++|+
T Consensus 390 ~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 390 STASTDKVVKLWK 402 (463)
T ss_pred eeccccceEEEEe
Confidence 9999999999998
No 148
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=9.2e-16 Score=156.77 Aligned_cols=253 Identities=13% Similarity=0.165 Sum_probs=191.3
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
...|+.++.|+.+++|+....++...+ .|..+|++++|.++ ..+++|+.||.|+.+|+.++.... ..
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~------~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~------ig 91 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKF------KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ------IG 91 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhhe------ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCccee------ec
Confidence 344566679999999999877655544 39999999999974 579999999999999998876433 24
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcE
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH 580 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~ 580 (755)
.|...+.++...+....+++++.+..+..|..... ..+..+ .....|.++... ++.
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~----------------------~~~~~~-d~~kkVy~~~v~-g~~ 147 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK----------------------VVVGTF-DQGKKVYCMDVS-GNR 147 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEecccc----------------------cccccc-ccCceEEEEecc-CCE
Confidence 67788889999988888889989988854443321 111112 223368888765 477
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEe---ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE-----EEeccCC---
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-----VDWNDLH--- 649 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~---~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~-----v~~~~~~--- 649 (755)
|++|..|..|.+||+++....... ..+-.+.||++.| ++.=+++++.||.|.+=.+...+. ..+..|.
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~ 226 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE 226 (323)
T ss_pred EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeeccc
Confidence 889999999999999976543322 2566899999999 888889999999988766655421 1222222
Q ss_pred ------CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 650 ------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 650 ------~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
.+|++++|+|-.+.||+|+.||.|.+||+.+.+.+..+. .-...|..++|+.+|. .|++++.
T Consensus 227 ~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~---------~~~~SI~slsfs~dG~-~LAia~s 294 (323)
T KOG1036|consen 227 KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA---------KYETSISSLSFSMDGS-LLAIASS 294 (323)
T ss_pred CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc---------CCCCceEEEEeccCCC-eEEEEec
Confidence 379999999999999999999999999999888776542 3356799999999998 7888754
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.7e-15 Score=168.01 Aligned_cols=276 Identities=18% Similarity=0.217 Sum_probs=210.4
Q ss_pred eeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeeccc-CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceee
Q 004404 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (755)
Q Consensus 414 vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~-~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~ 492 (755)
+.+.......++.+-.++.|.+|++.. ..++...|.+|. ..|-+++|++ +..|++.+.+|.|.-||+.+.+...
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~----~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSN----NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCC----CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeE
Confidence 333333444578899999999999875 344455677765 4799999994 5578999999999999999998877
Q ss_pred eeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEE
Q 004404 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572 (755)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~ 572 (755)
.+ ....+.++.++.+|....++.+..++.+.....+... + ..-..|.-..+.|.+
T Consensus 105 ~~-----d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~---------------I-----~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 105 NI-----DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK---------------I-----TYKRSLMRQKSRVLS 159 (691)
T ss_pred Ee-----cCCCcceeEEEeCCccceEEeecCCceEEEEecCCce---------------E-----EEEeecccccceEEE
Confidence 75 5566889999999999999888777754211111100 0 001223334688999
Q ss_pred EEecCCcE-EEEEeCCCcEEEEECCCCcEEEEe-----e----cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE
Q 004404 573 LSWSKSQH-LLSSSMDKTVRLWHLSSKTCLKIF-----S----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (755)
Q Consensus 573 L~~spd~~-LaSgs~DgtVrLWDl~t~~~~~~~-----~----h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~ 642 (755)
|+|+|++. ++.|+.||.|++||...+..++.. . ...-|++|.|-. ...|++|..-|+|.+||-..+.+
T Consensus 160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTL 237 (691)
T ss_pred EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcch
Confidence 99999955 999999999999999998877722 1 223478888875 46799999999999999999988
Q ss_pred EE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 643 VD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 643 v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
++ ...|...|.+++..+++.++++++.|+.|..|...+++..... ......|...|.+++..++ .+++|+.
T Consensus 238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~-----~~~r~~h~hdvrs~av~~~---~l~sgG~ 309 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI-----NSRRDLHAHDVRSMAVIEN---ALISGGR 309 (691)
T ss_pred hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee-----eccccCCcccceeeeeecc---eEEecce
Confidence 74 5567789999999999999999999999999988877553211 1234578888999998886 6888899
Q ss_pred CCcEEEEE
Q 004404 722 DSRIRVVD 729 (755)
Q Consensus 722 Dg~IrVWD 729 (755)
|.++.+--
T Consensus 310 d~~l~i~~ 317 (691)
T KOG2048|consen 310 DFTLAICS 317 (691)
T ss_pred eeEEEEcc
Confidence 88887754
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.73 E-value=1.7e-16 Score=168.94 Aligned_cols=270 Identities=17% Similarity=0.224 Sum_probs=188.5
Q ss_pred cEEEEeCCCcEEEEeeCC--CCcccceeeeeEeecccCCEEEEEEcCC-CCEEEEEECCCcEEEEeCcCCceeeeeeccc
Q 004404 422 DVSFHGQERVRVRQYGKS--CKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~--~~~~~~~~~~q~l~gH~~~I~sI~fSpd-g~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~ 498 (755)
.++++|...|.|-+||.. .++....+ .+..|.++|.+|.|+|. -..+++.|.||+|++=|++......-+ .
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~---~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~-s-- 274 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGVY---LFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVL-S-- 274 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCceE---EeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHh-h--
Confidence 457899999999999995 33333333 36789999999999994 458999999999999999765322111 0
Q ss_pred ccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec--CCCceEEeccCCCCEEEEEec
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~--s~k~i~~l~gH~~~V~~L~~s 576 (755)
.......+..+.++.+...++.+..-+.+ .+|+. .+.....+.-|...|..|+++
T Consensus 275 ~~~d~~~fs~~d~~~e~~~vl~~~~~G~f-----------------------~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 275 LDTDNIWFSSLDFSAESRSVLFGDNVGNF-----------------------NVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred cCccceeeeeccccCCCccEEEeecccce-----------------------EEEEeecCCccchhhhhhhcccceeecC
Confidence 01122333445555554444333332222 22222 233344566788899999999
Q ss_pred CC--cEEEEEeCCCcEEEEECCCC---c--EEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECC----CCcEEEe
Q 004404 577 KS--QHLLSSSMDKTVRLWHLSSK---T--CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP----ERQVVDW 645 (755)
Q Consensus 577 pd--~~LaSgs~DgtVrLWDl~t~---~--~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~----t~~~v~~ 645 (755)
|- .+|++++.|++++|||++.- . .+.++.|...|.+..|+|.++ .|++.+.|..|+|||.. .-.+..+
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC-ceEeeccCCceEEeecccccccCCccce
Confidence 96 68999999999999999852 2 356667999999999999444 49999999999999983 3333344
Q ss_pred ccCCC------CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEE-EEccCCCeEEEE
Q 004404 646 NDLHE------MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF-QFAPGSSSEVLV 718 (755)
Q Consensus 646 ~~~~~------~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl-~fsPdg~~~L~s 718 (755)
+.|.. .....+|.|+-.++++|-.-..|-|||-..++.+..+.. .....|.++ .|+|-+..+++-
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~--------P~~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD--------PESSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC--------ccccccccceeecccccceecc
Confidence 44432 345678999999999999999999999999986654321 122345543 699987644444
Q ss_pred EECCCcEEEEE
Q 004404 719 TSADSRIRVVD 729 (755)
Q Consensus 719 gs~Dg~IrVWD 729 (755)
++.-|.|+||-
T Consensus 483 ~~s~Gki~vft 493 (498)
T KOG4328|consen 483 GNSSGKIYVFT 493 (498)
T ss_pred CCccceEEEEe
Confidence 46678899886
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=6.6e-16 Score=158.68 Aligned_cols=248 Identities=17% Similarity=0.331 Sum_probs=182.3
Q ss_pred eecccCCEEEEEEcC-----CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCC----Cceecccc
Q 004404 452 IQAHNGSIWSIKFSL-----DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE----PTSLSPKH 522 (755)
Q Consensus 452 l~gH~~~I~sI~fSp-----dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~d----g~~l~~~s 522 (755)
...|+.+|..++|++ +-+.+||+|. ..|.|++......+.-++......+....+.++|+-+ ..+++.+.
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 468999999999985 2346777765 5789998865554444444444455566666666543 23444444
Q ss_pred CCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcE
Q 004404 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTC 600 (755)
Q Consensus 523 ~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~ 600 (755)
.-+.|. .+...+++....+.+|...|+.|.++|. ++++++|.|.+||||++++..|
T Consensus 113 ~~GvIr----------------------Vid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 113 YLGVIR----------------------VIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred ceeEEE----------------------EEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE
Confidence 444442 3334466778889999999999999998 6999999999999999999999
Q ss_pred EEEee----cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc-----------------------------------
Q 004404 601 LKIFS----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ----------------------------------- 641 (755)
Q Consensus 601 ~~~~~----h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~----------------------------------- 641 (755)
+..|+ |.+.|.++.|++ ++.+|++|+.|.+|++|++...+
T Consensus 171 v~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di 249 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI 249 (385)
T ss_pred EEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence 99995 999999999999 99999999999999999987321
Q ss_pred -----------------------EEEeccCC-------------------------CCE--EEEEEccCCCEEEEEECCC
Q 004404 642 -----------------------VVDWNDLH-------------------------EMV--TAACYTPDGQGALVGSYKG 671 (755)
Q Consensus 642 -----------------------~v~~~~~~-------------------------~~V--tsvafSPdG~~LasGs~DG 671 (755)
++.|...+ ..| ...+|.|-+++||.|...|
T Consensus 250 HrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 250 HRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred ccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC
Confidence 00011000 012 2335566778999999999
Q ss_pred cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 672 SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 672 ~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.|++||++........++ ........|...+|+.++. .|+..++|++|.-||
T Consensus 330 ~v~vwdL~~~ep~~~ttl-----~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 330 KVYVWDLDNNEPPKCTTL-----THSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWD 381 (385)
T ss_pred cEEEEECCCCCCccCceE-----EeccccceeeeeeecccCc-EEEEEeCCCcEEEEE
Confidence 999999998776532221 1112346799999999998 788899999999998
No 152
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.2e-16 Score=174.14 Aligned_cols=255 Identities=17% Similarity=0.221 Sum_probs=185.6
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCC---CcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeee
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSC---KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~---~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l 494 (755)
..+...+++++.++++.+|+++. .......++-+|.+|.++|.|+++.+++.++++|+.||+|+.|++....-
T Consensus 303 ~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d---- 378 (577)
T KOG0642|consen 303 HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD---- 378 (577)
T ss_pred CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC----
Confidence 44556689999999999999933 22234555677999999999999999999999999999999999741110
Q ss_pred ecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEE
Q 004404 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (755)
Q Consensus 495 ~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~ 574 (755)
|+ +.+ + .......+.||.+.|+.++
T Consensus 379 ------------------p~---------ds~-----------------d-----------p~vl~~~l~Ghtdavw~l~ 403 (577)
T KOG0642|consen 379 ------------------PD---------DSY-----------------D-----------PSVLSGTLLGHTDAVWLLA 403 (577)
T ss_pred ------------------cc---------ccc-----------------C-----------cchhccceeccccceeeee
Confidence 00 000 0 0012345789999999999
Q ss_pred ecCC-cEEEEEeCCCcEEEEECCCCcEEEEee---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC--
Q 004404 575 WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-- 648 (755)
Q Consensus 575 ~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~-- 648 (755)
+++. ..|++++.||+|++|+.....+ .+|+ ..+.-..+.|-......+++...-+.--++++....-+.++..
T Consensus 404 ~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~ 482 (577)
T KOG0642|consen 404 LSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSA 482 (577)
T ss_pred ecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccC
Confidence 9987 7899999999999999887666 4553 4455667776541112222222222223334433333332221
Q ss_pred ------CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC
Q 004404 649 ------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (755)
Q Consensus 649 ------~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D 722 (755)
...+.-+.+.|.+.+.+++..|+.|+++|..++.++... ..|...++++++.|+|. +|++++.|
T Consensus 483 ~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~---------~a~~~svtslai~~ng~-~l~s~s~d 552 (577)
T KOG0642|consen 483 SPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM---------VAHKDSVTSLAIDPNGP-YLMSGSHD 552 (577)
T ss_pred CCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe---------eeccceecceeecCCCc-eEEeecCC
Confidence 145788999999999999999999999999999988754 37899999999999998 89999999
Q ss_pred CcEEEEE--CCcceEEeecCCc
Q 004404 723 SRIRVVD--GIDLVHKFKGENY 742 (755)
Q Consensus 723 g~IrVWD--~~~ll~~~~GH~~ 742 (755)
+.|++|. ...++.....|+.
T Consensus 553 ~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 553 GSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred ceeehhhccchheeeccccccc
Confidence 9999998 4666666666654
No 153
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.9e-16 Score=165.59 Aligned_cols=265 Identities=16% Similarity=0.197 Sum_probs=195.7
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCc-eeccccCCCceeeecccc
Q 004404 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~-~l~~~s~d~~i~~~~~~~ 534 (755)
.+.|++|.|+|....|++|+.|++++||.+...... .+.. ..-...++....+.|+|. .+++++...++.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS--~~l~~fPi~~a~f~p~G~~~i~~s~rrky~y------ 283 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQS--IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLY------ 283 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hhee--eeeccCccceeeecCCCceEEEecccceEEE------
Confidence 468999999999999999999999999998543221 1111 122346778889999988 666655544442
Q ss_pred cccccccccCcccccceeeecCC---CceEEeccCC-CCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCc
Q 004404 535 SINRKSLSLDHMVVPETVFALSD---KPICSFQGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~---k~i~~l~gH~-~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~ 609 (755)
.|++.. .++..+.|+. ..+.....+++ ++|+..+..|.|.|....+++.+..++..+.
T Consensus 284 -----------------syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~ 346 (514)
T KOG2055|consen 284 -----------------SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV 346 (514)
T ss_pred -----------------EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE
Confidence 233322 2233334444 34566777887 7899999999999999999999999999999
Q ss_pred eEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCC--EEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecc
Q 004404 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM--VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 610 VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~--VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~ 687 (755)
|..++|+. +++.|++++.+|.|.+||++...++....-.+. -+++|.+++|.+||+|+..|.|.|||..+...-..
T Consensus 347 v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~- 424 (514)
T KOG2055|consen 347 VSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN- 424 (514)
T ss_pred EeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC-
Confidence 99999998 999999999999999999999988865544544 46788889999999999999999999765432221
Q ss_pred ccccccccccCCCCCeEEEEEccCCCeEEEEEE--CCCcEEEEE--CCcceEEeecCCcc---EEEEEEEE
Q 004404 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVD--GIDLVHKFKGENYV---QYMVCIVL 751 (755)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs--~Dg~IrVWD--~~~ll~~~~GH~~~---V~sv~fs~ 751 (755)
+.+.+.+..-...|++++|+|+.+ +|+.+| .+..+|+-. .......|...... |.+++|+|
T Consensus 425 --PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 425 --PKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP 492 (514)
T ss_pred --CCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC
Confidence 111223334567899999999998 677775 467899887 34444555544333 88888887
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3e-17 Score=191.06 Aligned_cols=267 Identities=16% Similarity=0.208 Sum_probs=195.3
Q ss_pred EEEEcCCCC-EEEEE----------ECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCce----eccccCCC
Q 004404 461 SIKFSLDGR-YLASA----------GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS----LSPKHLDN 525 (755)
Q Consensus 461 sI~fSpdg~-~LaTg----------s~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~----l~~~s~d~ 525 (755)
.++|+|.+. +||+| +.+.++-||.+........+...........+..+.|.+.+.. ++.+..++
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 467888776 56555 3355667776643332222211112233455667777776554 77788888
Q ss_pred ceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEE
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKI 603 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~ 603 (755)
.+.++.....+ -......+..+..|.+.|..|.|++. +.|++|+.||.|.|||+..-+...+
T Consensus 91 ~I~ly~p~~~~----------------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~ 154 (1049)
T KOG0307|consen 91 NIVLYDPASII----------------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT 154 (1049)
T ss_pred ceEEecchhhc----------------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC
Confidence 87655444321 01123456678889999999999996 5899999999999999987554444
Q ss_pred ee---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCC--CCEEEEEEccCC-CEEEEEECCC---cE
Q 004404 604 FS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLH--EMVTAACYTPDG-QGALVGSYKG---SC 673 (755)
Q Consensus 604 ~~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~--~~VtsvafSPdG-~~LasGs~DG---~I 673 (755)
+. ..+.|.+|+|+......|++++.+|++.|||++..+.+ .+..+. ..+..++|+|+. ..|++++.|. .|
T Consensus 155 ~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 155 PGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred CCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence 42 56789999999866789999999999999999988765 333332 358899999977 5566666554 48
Q ss_pred EEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 674 ~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
.+||++.-.... +.+.+|...|.++.|++.+..+|++++.|++|.+|+ +++.+..+....+++..+.|.|
T Consensus 235 qlWDlR~assP~--------k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 235 QLWDLRFASSPL--------KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCP 306 (1049)
T ss_pred EeecccccCCch--------hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecC
Confidence 999988644322 234599999999999999977999999999999999 6889999999888999988865
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.7e-17 Score=188.74 Aligned_cols=232 Identities=16% Similarity=0.236 Sum_probs=184.7
Q ss_pred cEEEEeCCCcEEEEeeCCCC-cccceeeeeEeecccCCEEEEEEcCCCC-EEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 422 DVSFHGQERVRVRQYGKSCK-DLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~-~~~~~~~~q~l~gH~~~I~sI~fSpdg~-~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
.+++.|.+||.|-+|+...- .-.....+.....|+++|..+.|++... +||+|+.||.|.|||+...+....+.
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---- 156 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---- 156 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----
Confidence 46788999999999998652 1122223345678999999999999654 99999999999999996543221110
Q ss_pred cCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-
Q 004404 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd- 578 (755)
-....+.|.+|+|+..
T Consensus 157 ---------------------------------------------------------------~~~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 157 ---------------------------------------------------------------SQAPPSEIKCLSWNRKV 173 (1049)
T ss_pred ---------------------------------------------------------------CCCCcccceEeccchhh
Confidence 0113467999999986
Q ss_pred -cEEEEEeCCCcEEEEECCCCcEEEEee-cC--CceEEEEEeeCCCcEEEEEECCC---cEEEEECCCCc-EEEe-ccCC
Q 004404 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS--DYVTCIQFNPVDDRYFISGSLDA---KVRIWSIPERQ-VVDW-NDLH 649 (755)
Q Consensus 579 -~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~--~~VtsVafsP~dg~~LaSgS~Dg---tVrIWDl~t~~-~v~~-~~~~ 649 (755)
..|++++.+|.+.|||++..+.+..+. +. ..+..|+|||.+...|++++.|. .|.+||++.-. +++. ..|.
T Consensus 174 qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~ 253 (1049)
T KOG0307|consen 174 SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ 253 (1049)
T ss_pred hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc
Confidence 668899999999999999988877776 33 34889999996677888888775 49999987633 3343 4677
Q ss_pred CCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEE
Q 004404 650 EMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 650 ~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVW 728 (755)
..|.++.|++.+ .+|++++.|+.|.+|+..+++.+..+. .....+..+.|+|..+..|++++-||.|.||
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---------AQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---------CCCcceeeeeecCCCcchhhhheeccceeee
Confidence 899999999966 899999999999999999999988754 4668899999999988789999999999999
Q ss_pred E
Q 004404 729 D 729 (755)
Q Consensus 729 D 729 (755)
.
T Consensus 325 s 325 (1049)
T KOG0307|consen 325 S 325 (1049)
T ss_pred e
Confidence 8
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.70 E-value=2.7e-16 Score=167.46 Aligned_cols=211 Identities=17% Similarity=0.274 Sum_probs=166.7
Q ss_pred eeeEeecccCCEEEEEEcCCC--CEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCC
Q 004404 448 KCQEIQAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (755)
Q Consensus 448 ~~q~l~gH~~~I~sI~fSpdg--~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~ 525 (755)
..+.++-|.+.|++++|+|.. +++|+|..-|.|-+||+.+.+...
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~--------------------------------- 224 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK--------------------------------- 224 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---------------------------------
Confidence 345566799999999999954 589999999999999996332111
Q ss_pred ceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEE
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKI 603 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~ 603 (755)
..+..+..|.++|.+|.|+|. .++++.|.||+|++-|++.......
T Consensus 225 --------------------------------d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v 272 (498)
T KOG4328|consen 225 --------------------------------DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEV 272 (498)
T ss_pred --------------------------------CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHH
Confidence 123456789999999999996 7899999999999999997654444
Q ss_pred ee---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE--EEeccCCCCEEEEEEccC-CCEEEEEECCCcEEEEE
Q 004404 604 FS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYN 677 (755)
Q Consensus 604 ~~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~--v~~~~~~~~VtsvafSPd-G~~LasGs~DG~I~lwD 677 (755)
+. ....+..++|+. +...++.+..=|.+.+||+++..- -.+.-|...|++|+++|- ..+||+++.|++.+|||
T Consensus 273 ~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD 351 (498)
T KOG4328|consen 273 LSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWD 351 (498)
T ss_pred hhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeee
Confidence 43 345677888988 677777787778999999988654 355566779999999995 46889999999999999
Q ss_pred CCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
++........ ......|...|.+..|+|.+.+ |++++.|..|||||.
T Consensus 352 ~R~l~~K~sp-----~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 352 LRQLRGKASP-----FLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDS 398 (498)
T ss_pred hhhhcCCCCc-----ceecccccceeeeeEEcCCCCc-eEeeccCCceEEeec
Confidence 9875544320 1122379999999999999985 999999999999995
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.4e-15 Score=155.34 Aligned_cols=196 Identities=18% Similarity=0.284 Sum_probs=157.5
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccc
Q 004404 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (755)
Q Consensus 459 I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~ 538 (755)
-.|+.|++.|.+||.|..||.|.|||+.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~------------------------------------------------- 56 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR------------------------------------------------- 56 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------------------------------------------------
Confidence 6899999999999999999999999986543
Q ss_pred cccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEee
Q 004404 539 KSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNP 617 (755)
Q Consensus 539 ~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP 617 (755)
.-+.+.+|..+|++++|+++ .+|++++.|..|.+||+..|.+++.+...++|+.+.|+|
T Consensus 57 --------------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp 116 (405)
T KOG1273|consen 57 --------------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHP 116 (405)
T ss_pred --------------------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeecc
Confidence 12235679999999999999 679999999999999999999999999999999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCcE--EEecc---CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccc
Q 004404 618 VDDRYFISGSLDAKVRIWSIPERQV--VDWND---LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ 692 (755)
Q Consensus 618 ~dg~~LaSgS~DgtVrIWDl~t~~~--v~~~~---~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~ 692 (755)
.+.+.+++.-.+..-.+-++..... +.... .........|.+.|+++++|...|.+.+||..+.+++..+.+
T Consensus 117 ~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri--- 193 (405)
T KOG1273|consen 117 RKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI--- 193 (405)
T ss_pred ccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee---
Confidence 7667777666666666666654322 21111 111223346999999999999999999999999988876543
Q ss_pred cccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECCc
Q 004404 693 NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (755)
Q Consensus 693 ~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~~ 732 (755)
.....|..+.|+..|. +|+..+.|..||.|+..+
T Consensus 194 -----ts~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 194 -----TSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISD 227 (405)
T ss_pred -----chheeeeEEEEeccCc-EEEEecCCceEEEEehhh
Confidence 2246788899999988 899999999999999543
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.68 E-value=8.9e-16 Score=161.58 Aligned_cols=170 Identities=24% Similarity=0.382 Sum_probs=131.0
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccc----eeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeee
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTA----LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~----~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~ 493 (755)
..+...+++|..|..|++|.+...+-.. ..-...|..|..+|++|.|+|+|.+||||+.+|.|.+|....-...
T Consensus 23 ~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-- 100 (434)
T KOG1009|consen 23 KNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-- 100 (434)
T ss_pred cCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc--
Confidence 3334478999999999999887655433 2233567899999999999999999999999999999975430000
Q ss_pred eecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEE
Q 004404 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (755)
Q Consensus 494 l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L 573 (755)
+ .+... ............+.+|..+|+++
T Consensus 101 -------------------~---------~d~e~-----------------------~~~ke~w~v~k~lr~h~~diydL 129 (434)
T KOG1009|consen 101 -------------------D---------ADTEA-----------------------DLNKEKWVVKKVLRGHRDDIYDL 129 (434)
T ss_pred -------------------c---------ccchh-----------------------hhCccceEEEEEecccccchhhh
Confidence 0 00000 00000112345677899999999
Q ss_pred EecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc
Q 004404 574 SWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (755)
Q Consensus 574 ~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~ 641 (755)
+|+|+ ..+++++.|.++++||+..|.....+. |..+|..++|.| -++++++-+.|...+++.+...+
T Consensus 130 ~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 130 AWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred hccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeee
Confidence 99998 779999999999999999999999986 999999999999 88999999999888887765543
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=1e-13 Score=149.65 Aligned_cols=259 Identities=26% Similarity=0.435 Sum_probs=193.8
Q ss_pred eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc-eeeeeecccccCccccEEEeec-CCCCc-eeccc-cCCCce
Q 004404 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANG-SPEPT-SLSPK-HLDNHL 527 (755)
Q Consensus 452 l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~-~~~~l~~~~~~~~~~~v~~v~~-s~dg~-~l~~~-s~d~~i 527 (755)
+..|...|.++.|.+.+..++.++.|+.+.+|+..... ....+..... ..+..+.. .+++. .+... ..++.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD----SSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC----CceeeEEEECCCcceEEeccCCCCccE
Confidence 56799999999999999999999999999999998776 3333321111 22333333 44444 22222 213333
Q ss_pred eeecccccccccccccCcccccceeeecC--CCceEEeccCCCCEEEEEecCCc-EEEEEeC-CCcEEEEECCCCcEEEE
Q 004404 528 EKKRRGRSINRKSLSLDHMVVPETVFALS--DKPICSFQGHLDDVLDLSWSKSQ-HLLSSSM-DKTVRLWHLSSKTCLKI 603 (755)
Q Consensus 528 ~~~~~~~~~~~~s~s~d~~~~~~~v~~~s--~k~i~~l~gH~~~V~~L~~spd~-~LaSgs~-DgtVrLWDl~t~~~~~~ 603 (755)
.+|... ......+..|...|..++|+|++ .+++++. |+.+++|++..+..+..
T Consensus 137 -----------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (466)
T COG2319 137 -----------------------KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193 (466)
T ss_pred -----------------------EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe
Confidence 455555 36778899999999999999985 6777775 99999999999888888
Q ss_pred ee-cCCceEEEEEeeCCCc-EEEEEECCCcEEEEECCCCcEEE--eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 604 FS-HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 604 ~~-h~~~VtsVafsP~dg~-~LaSgS~DgtVrIWDl~t~~~v~--~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
+. |...|.+++|+| ++. ++++++.|+.|++||...+.... ...+.... ...|+|++.++++++.++.+++|++.
T Consensus 194 ~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 194 LAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred eccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 86 899999999998 777 66666999999999998777765 34444443 33899999999999999999999998
Q ss_pred CCee-eeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEee--cCCccEEEEEE
Q 004404 680 ENKL-QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFK--GENYVQYMVCI 749 (755)
Q Consensus 680 ~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~~--GH~~~V~sv~f 749 (755)
.... .... ..|...|.++.|.|++. .+++++.|+.+++||. ........ +|...+..+.+
T Consensus 272 ~~~~~~~~~---------~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 272 SSSSLLRTL---------SGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336 (466)
T ss_pred CCCcEEEEE---------ecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE
Confidence 7665 2211 37889999999999776 5666888899999993 34444444 78776777665
No 160
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=157.37 Aligned_cols=276 Identities=13% Similarity=0.182 Sum_probs=189.9
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC--CCCEEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp--dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
..++.+...+.|++||+.++.. ++++++|...+..|+|.. ....+.+|+.||+|++||+........+.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~-----l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~ 115 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL-----LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ 115 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh-----hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC
Confidence 4467889999999999986543 456779999999999977 456899999999999999988776665532221
Q ss_pred cCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC--CCceEE-eccCCCCEEEEEec
Q 004404 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS--DKPICS-FQGHLDDVLDLSWS 576 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s--~k~i~~-l~gH~~~V~~L~~s 576 (755)
. ..+..+++..-...+++.+...... ...-.+|+.. .+++.. ...|..+|++|+|+
T Consensus 116 ~--~~~f~~ld~nck~~ii~~GtE~~~s-------------------~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFH 174 (376)
T KOG1188|consen 116 S--GTPFICLDLNCKKNIIACGTELTRS-------------------DASVVLWDVRSEQQLLRQLNESHNDDVTQLRFH 174 (376)
T ss_pred C--CCcceEeeccCcCCeEEeccccccC-------------------ceEEEEEEeccccchhhhhhhhccCcceeEEec
Confidence 1 3455566666566666665322111 0111344442 232333 46799999999999
Q ss_pred CC--cEEEEEeCCCcEEEEECCCC----cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC-
Q 004404 577 KS--QHLLSSSMDKTVRLWHLSSK----TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH- 649 (755)
Q Consensus 577 pd--~~LaSgs~DgtVrLWDl~t~----~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~- 649 (755)
|+ ++|++||.||-|.|||+... .++.++.|...|.++.|+...-+.|.+-+...+..+|+++.+....+....
T Consensus 175 P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 175 PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCcc
Confidence 97 89999999999999999754 456677789999999999733357889999999999999988755443322
Q ss_pred ------------CCEEEEEEccCCCEEEEEEC-CCcEEEEECC---CCeeeeccccccccccccCCCCCeEEEEEccCCC
Q 004404 650 ------------EMVTAACYTPDGQGALVGSY-KGSCHLYNTS---ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (755)
Q Consensus 650 ------------~~VtsvafSPdG~~LasGs~-DG~I~lwDl~---~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~ 713 (755)
..+...-..-+...+++++. -+...++-+. .+.......+ .-.+|..-|.++.|...+.
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~-----l~g~~~eiVR~i~~~~~~~ 329 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAI-----LQGGHEEIVRDILFDVKND 329 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCcccc-----ccCCcHHHHHHHhhhcccc
Confidence 12222222224455555443 5555555443 3333332221 1124777888998887666
Q ss_pred eEEEEEECCCcEEEEE
Q 004404 714 SEVLVTSADSRIRVVD 729 (755)
Q Consensus 714 ~~L~sgs~Dg~IrVWD 729 (755)
++.+|+.||.+.+|.
T Consensus 330 -~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 330 -VLYTGGEDGLLQAWK 344 (376)
T ss_pred -eeeccCCCceEEEEe
Confidence 899999999999998
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=6.1e-15 Score=161.42 Aligned_cols=154 Identities=19% Similarity=0.390 Sum_probs=122.2
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEECCCC-------cEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECC
Q 004404 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK-------TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (755)
Q Consensus 569 ~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~-------~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~ 638 (755)
.|+++.|.|- ..|++++.||.|+||.+..+ .+...+. |...|+.+.|+|.-.+.|++++.|-+|+|||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 3788999983 78999999999999998754 3344454 999999999999778899999999999999999
Q ss_pred CCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEE
Q 004404 639 ERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (755)
Q Consensus 639 t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~ 717 (755)
+.+.. .+.+|.+.|..++|+|+|+.+++.+.||+|++|+.+.+....... + ..-...--.|.|.-+|. +++
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg-----~--gpvgtRgARi~wacdgr-~vi 780 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG-----K--GPVGTRGARILWACDGR-IVI 780 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccC-----C--CCccCcceeEEEEecCc-EEE
Confidence 98765 788899999999999999999999999999999998775432110 0 01113345677888998 555
Q ss_pred EEECC----CcEEEEEC
Q 004404 718 VTSAD----SRIRVVDG 730 (755)
Q Consensus 718 sgs~D----g~IrVWD~ 730 (755)
+.+.| .+|.+||.
T Consensus 781 v~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDA 797 (1012)
T ss_pred Eecccccchhhhhhhhh
Confidence 55444 56888883
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=5.5e-15 Score=162.51 Aligned_cols=252 Identities=17% Similarity=0.251 Sum_probs=191.6
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEe
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v 509 (755)
+.++.+||...+. ..+++++|++.|+|++|+.||+.+|+|+.|..|.||.-.-.. .+ ...|...+.++
T Consensus 32 g~rlliyD~ndG~-----llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~L----kYSH~D~IQCM 99 (1081)
T KOG1538|consen 32 GSRLLVYDTSDGT-----LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---IL----KYSHNDAIQCM 99 (1081)
T ss_pred CCEEEEEeCCCcc-----cccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---ee----eeccCCeeeEe
Confidence 4678889887554 356788999999999999999999999999999999853222 12 35678889999
Q ss_pred ecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCC
Q 004404 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK 588 (755)
Q Consensus 510 ~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~Dg 588 (755)
.|.|-...+++++.... -+|....+.+...+ -...|.+.+|..+ ++|+.|-.+|
T Consensus 100 sFNP~~h~LasCsLsdF------------------------glWS~~qK~V~K~k-ss~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 100 SFNPITHQLASCSLSDF------------------------GLWSPEQKSVSKHK-SSSRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred ecCchHHHhhhcchhhc------------------------cccChhhhhHHhhh-hheeEEEeeecCCCcEEEEeccCc
Confidence 99999888887754433 23333333332222 2346888999998 7789999999
Q ss_pred cEEEEECCCCcEEEEee---cCCceEEEEEeeCC----CcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCC
Q 004404 589 TVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVD----DRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG 661 (755)
Q Consensus 589 tVrLWDl~t~~~~~~~~---h~~~VtsVafsP~d----g~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG 661 (755)
+|.|-+-...+.+..-. .+.+|.+|+|+|.. .+.+++.....++.+|.+....+-......-...++.+-|+|
T Consensus 155 TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 155 TISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred eEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCC
Confidence 99998754333333332 77899999999932 257888899999999988765544455566678899999999
Q ss_pred CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 662 QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 662 ~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.+++.|+.|+.+++|--+. -.+.+. ......|..++..|+++ .++.|+.||+|-.|+
T Consensus 235 Ey~LiGGsdk~L~~fTR~G-vrLGTv---------g~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFTRDG-VRLGTV---------GEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYN 291 (1081)
T ss_pred cEEEEccCCCceEEEeecC-eEEeec---------cccceeEEEEEEccCCc-eEEEEEccCeeehhh
Confidence 9999999999999996543 333332 13567899999999998 799999999999998
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=7.2e-15 Score=150.23 Aligned_cols=250 Identities=15% Similarity=0.182 Sum_probs=173.6
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
.+++.|..+|+|-|||..+.... +.|.+|.-+|.+++||+||+.|+|+|.|..|++||+..+....++.
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~~ia-----r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir------ 104 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTFRIA-----RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR------ 104 (405)
T ss_pred ceeeeeccCCcEEEEEccccchh-----hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE------
Confidence 55899999999999999865533 4467999999999999999999999999999999997776544431
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--c
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--Q 579 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~ 579 (755)
...+|+...|+|- +
T Consensus 105 ----------------------------------------------------------------f~spv~~~q~hp~k~n 120 (405)
T KOG1273|consen 105 ----------------------------------------------------------------FDSPVWGAQWHPRKRN 120 (405)
T ss_pred ----------------------------------------------------------------ccCccceeeeccccCC
Confidence 2245666666663 4
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEee------cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC--CC
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFS------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--EM 651 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~------h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~--~~ 651 (755)
++++.-.+..-.+-++..+... .+. .+....+..|.+ .|+++++|...|.+.++|..+.+++..+... ..
T Consensus 121 ~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~ 198 (405)
T KOG1273|consen 121 KCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRITSVQA 198 (405)
T ss_pred eEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeechhee
Confidence 5555555555555555542211 111 112223346888 8999999999999999999999988655433 57
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccc--cCCCCCeEEEEEccCCCeEEEEE-ECCCcEEEE
Q 004404 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK--RSHQRKITGFQFAPGSSSEVLVT-SADSRIRVV 728 (755)
Q Consensus 652 VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~--~~h~~~Vtsl~fsPdg~~~L~sg-s~Dg~IrVW 728 (755)
|..+-++..|++|++-+.|..||.|+++.-.....-....+..++ .-....-.++.|+.+|. +++.+ ..-..++||
T Consensus 199 IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge-Yv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 199 IKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE-YVCAGSARAHALYIW 277 (405)
T ss_pred eeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc-EEEeccccceeEEEE
Confidence 889999999999999999999999998732211000000000000 01223345778999998 45554 456789999
Q ss_pred E--CCcceEEeecCC-ccEEEEEE
Q 004404 729 D--GIDLVHKFKGEN-YVQYMVCI 749 (755)
Q Consensus 729 D--~~~ll~~~~GH~-~~V~sv~f 749 (755)
. .|.+++.+.|-+ +....+.+
T Consensus 278 E~~~GsLVKILhG~kgE~l~DV~w 301 (405)
T KOG1273|consen 278 EKSIGSLVKILHGTKGEELLDVNW 301 (405)
T ss_pred ecCCcceeeeecCCchhheeeccc
Confidence 9 689999999887 33444433
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.65 E-value=9e-15 Score=150.03 Aligned_cols=262 Identities=16% Similarity=0.197 Sum_probs=176.5
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeee----ee----cccccCccccEEEeec-------CCCCceeccccC
Q 004404 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE----LL----EKQEDGHLNMLLLANG-------SPEPTSLSPKHL 523 (755)
Q Consensus 459 I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~----l~----~~~~~~~~~~v~~v~~-------s~dg~~l~~~s~ 523 (755)
...+.|+|||..|++-+.|..+++|++...-.... +. ..........+....| .|+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 45689999999999999999999999832211000 00 0000000111111111 122233333222
Q ss_pred CCceeeecccccccccccccCcccccceeeec-CCCceEEecc--CCCC---EEEEEecCCcEEEEEeCCCcEEEEEC-C
Q 004404 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG--HLDD---VLDLSWSKSQHLLSSSMDKTVRLWHL-S 596 (755)
Q Consensus 524 d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~g--H~~~---V~~L~~spd~~LaSgs~DgtVrLWDl-~ 596 (755)
+..| .+|+. +++....+.+ |..+ ..+|+|+|++.-+.++...+|++||+ +
T Consensus 132 ~~PI-----------------------h~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~R 188 (406)
T KOG2919|consen 132 DQPI-----------------------HLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSR 188 (406)
T ss_pred cCce-----------------------eeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccC
Confidence 2222 34433 4454444443 4444 45799999988788888899999999 4
Q ss_pred CCcEE---EEee-----cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEE
Q 004404 597 SKTCL---KIFS-----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVG 667 (755)
Q Consensus 597 t~~~~---~~~~-----h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasG 667 (755)
.|+.- .++. ..+-|.|++|+|.+...++.|+...++-||.-..+.++. +..|.+.|+.++|.++|+.|++|
T Consensus 189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence 44322 2222 367899999999888899999999999999888777764 45677899999999999999998
Q ss_pred EC-CCcEEEEECCCCeeeeccccccccccccCCCC-CeEEEEE--ccCCCeEEEEEECCCcEEEEEC---CcceEEeecC
Q 004404 668 SY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQR-KITGFQF--APGSSSEVLVTSADSRIRVVDG---IDLVHKFKGE 740 (755)
Q Consensus 668 s~-DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~-~Vtsl~f--sPdg~~~L~sgs~Dg~IrVWD~---~~ll~~~~GH 740 (755)
.. +-.|-.||++....... .+..|.. .=..|.| .|.+. +|++|+.||.|++||. ++.+..+..|
T Consensus 269 aRk~dkIl~WDiR~~~~pv~--------~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~ 339 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVY--------ALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNY 339 (406)
T ss_pred ccCCCeEEEEeehhccchhh--------hhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccc
Confidence 75 67899999987554321 1223433 2233444 67887 8999999999999994 6677888889
Q ss_pred CccEEEEEEEEE
Q 004404 741 NYVQYMVCIVLF 752 (755)
Q Consensus 741 ~~~V~sv~fs~F 752 (755)
...++.+++.|.
T Consensus 340 sd~vNgvslnP~ 351 (406)
T KOG2919|consen 340 SDTVNGVSLNPI 351 (406)
T ss_pred cccccceecCcc
Confidence 999999988764
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.64 E-value=1.1e-14 Score=147.45 Aligned_cols=283 Identities=18% Similarity=0.243 Sum_probs=193.0
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC-CCCEEEEEECC-------CcEEEEeCcCCcee-----eeee
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGED-------CVIHVWQVVESERK-----GELL 495 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp-dg~~LaTgs~D-------GtVrVWdl~t~~~~-----~~l~ 495 (755)
.+..|.+....... .....+.|..|.+.|+.|+-+| +.+.|+|+-.+ -.+.||.+...... .+..
T Consensus 38 ~dNqVhll~~d~e~--s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v 115 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEG--SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV 115 (370)
T ss_pred CcceeEEEEecCcc--chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh
Confidence 45666665554322 2223355778999999999999 56678887553 24789998655433 1222
Q ss_pred cccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEe
Q 004404 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (755)
Q Consensus 496 ~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~ 575 (755)
......+...+.++.|.|++..+++-. +..+..+......... . .+ +...-.+|....++-+|
T Consensus 116 ~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~v---------a-ev------~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIV---------A-EV------LSSESAEMRHSFTSGAW 178 (370)
T ss_pred hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchh---------e-ee------cccccccccceeccccc
Confidence 222334455788999999988877764 3333333222211100 0 00 00011135666788899
Q ss_pred cC--CcEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc-EE-EeccCC
Q 004404 576 SK--SQHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VV-DWNDLH 649 (755)
Q Consensus 576 sp--d~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~-~v-~~~~~~ 649 (755)
+| ++..+....|++++.||+++..+...+. |...|..+.|+|....+|++|+.||.|+|||++..+ ++ .+.+|.
T Consensus 179 spHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs 258 (370)
T KOG1007|consen 179 SPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHS 258 (370)
T ss_pred CCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCc
Confidence 99 4666666778999999999988887775 889999999999556689999999999999998644 33 556777
Q ss_pred CCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeeeecccc--------------------ccccccccCCCCCeEEEEE
Q 004404 650 EMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPI--------------------NLQNKKKRSHQRKITGFQF 708 (755)
Q Consensus 650 ~~VtsvafSP-dG~~LasGs~DG~I~lwDl~~~~~~~~~~i--------------------~~~~~~~~~h~~~Vtsl~f 708 (755)
.+|.+|.|.| ..++|++|+.|..|.+|....-.....++. .-....+..|...|.+++|
T Consensus 259 HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW 338 (370)
T KOG1007|consen 259 HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW 338 (370)
T ss_pred eEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEee
Confidence 8999999999 457888999999999998754321111110 0111245679999999999
Q ss_pred ccCCCeEEEEEECCCcEEEEEC
Q 004404 709 APGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 709 sPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+.-.+..+++-+.||++.|=..
T Consensus 339 SsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 339 SSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccCCCeeEEEeccCceEEeecC
Confidence 9988877888899999988653
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=5.4e-14 Score=139.45 Aligned_cols=254 Identities=17% Similarity=0.234 Sum_probs=176.2
Q ss_pred ecCCCcEEEEeCCCcEEEEeeCCCC-----cccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCcee
Q 004404 417 TDDSQDVSFHGQERVRVRQYGKSCK-----DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK 491 (755)
Q Consensus 417 ~~ds~~~l~sg~~dg~Vriwd~~~~-----~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~ 491 (755)
......+++.|...|.|.+..+..- +.....++...++|.++|+.++|. ..+|++|+ ||.|+=|...+....
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es 94 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES 94 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh
Confidence 3444566888999999988876532 222233344568999999999998 45777776 499999987544321
Q ss_pred eeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEE
Q 004404 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571 (755)
Q Consensus 492 ~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~ 571 (755)
... . .+|... .|.++-.-.-.+|+
T Consensus 95 ~~~---------K----------------------------------------------~lwe~~-~P~~~~~~evPeIN 118 (325)
T KOG0649|consen 95 LAT---------K----------------------------------------------RLWEVK-IPMQVDAVEVPEIN 118 (325)
T ss_pred ccc---------h----------------------------------------------hhhhhc-CccccCcccCCccc
Confidence 000 0 000000 00000001123588
Q ss_pred EEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC
Q 004404 572 DLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (755)
Q Consensus 572 ~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~ 649 (755)
+|...|. +.++.++.|+.++-||+++|+..+++. |+++|.++.--. ....+++|++||++||||+++++.+..+...
T Consensus 119 am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 119 AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccc
Confidence 8988887 778888899999999999999999997 999999999844 4567999999999999999999987665322
Q ss_pred -----------CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 650 -----------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 650 -----------~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
.+|.+++.+ ..+|++|+ ...+.+|+++..+....+++ ..+|..+.|..+ .+++
T Consensus 198 k~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpi----------pa~v~~v~F~~d---~vl~ 261 (325)
T KOG0649|consen 198 KNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPI----------PARVHLVDFVDD---CVLI 261 (325)
T ss_pred cChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEec----------ccceeEeeeecc---eEEE
Confidence 245555554 56888876 56799999999988887764 345677778765 6888
Q ss_pred EECCCcEEEEE-CCcceEEeecCCccEEE
Q 004404 719 TSADSRIRVVD-GIDLVHKFKGENYVQYM 746 (755)
Q Consensus 719 gs~Dg~IrVWD-~~~ll~~~~GH~~~V~s 746 (755)
++....|.-|. .+.+-....+-...+++
T Consensus 262 ~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s 290 (325)
T KOG0649|consen 262 GGEGNHVQSYTLNGVLQANIPVESTACYS 290 (325)
T ss_pred eccccceeeeeeccEEEEeccCCccceee
Confidence 88888888887 44444444444333333
No 167
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.63 E-value=1.2e-14 Score=160.03 Aligned_cols=259 Identities=15% Similarity=0.166 Sum_probs=184.3
Q ss_pred EEEEEcC---CCCEEEEEECCCcEEEEeCcCCcee-eeeecccccCccccEEEeecCCCCceeccccCCCceeeeccccc
Q 004404 460 WSIKFSL---DGRYLASAGEDCVIHVWQVVESERK-GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (755)
Q Consensus 460 ~sI~fSp---dg~~LaTgs~DGtVrVWdl~t~~~~-~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~ 535 (755)
.+..|++ ....||.+.+||.|.++|....... .+-.......|.+.++.+.|-|....|++...+..+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~-------- 124 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI-------- 124 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCcee--------
Confidence 3467766 2347999999999999998655433 111122346789999999999977778877777766
Q ss_pred ccccccccCcccccceeeecCC-CceE--EeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCc-----------
Q 004404 536 INRKSLSLDHMVVPETVFALSD-KPIC--SFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT----------- 599 (755)
Q Consensus 536 ~~~~s~s~d~~~~~~~v~~~s~-k~i~--~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~----------- 599 (755)
..|++.. +.+. .+.||++.|.++||.|. ..|++|+.||.|.|||++...
T Consensus 125 ---------------r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 125 ---------------RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred ---------------eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence 3444422 3333 48899999999999996 679999999999999986321
Q ss_pred ---------EEEEe--------ecCC----ceEEEEEeeCCCcEEEEEEC-CCcEEEEECCCCcEEE---------eccC
Q 004404 600 ---------CLKIF--------SHSD----YVTCIQFNPVDDRYFISGSL-DAKVRIWSIPERQVVD---------WNDL 648 (755)
Q Consensus 600 ---------~~~~~--------~h~~----~VtsVafsP~dg~~LaSgS~-DgtVrIWDl~t~~~v~---------~~~~ 648 (755)
..+.+ .+.. .|+.+.| . |...||+++. |+.|+|||++...... +..+
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~ 267 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH 267 (720)
T ss_pred hccccCCCCCCchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCc
Confidence 11111 1233 3555555 4 8889999888 9999999998754321 1111
Q ss_pred ---CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCC--eEEEEEccCCCeEEEEEECCC
Q 004404 649 ---HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK--ITGFQFAPGSSSEVLVTSADS 723 (755)
Q Consensus 649 ---~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~--Vtsl~fsPdg~~~L~sgs~Dg 723 (755)
.-.++++.....|.+|++.+.|+.|++|++.....-....+ .++... -..-..+|++. +|++|+.|.
T Consensus 268 skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~-------sg~~~~sf~vks~lSpd~~-~l~SgSsd~ 339 (720)
T KOG0321|consen 268 SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF-------SGKLNSSFYVKSELSPDDC-SLLSGSSDE 339 (720)
T ss_pred ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc-------cCcccceeeeeeecCCCCc-eEeccCCCc
Confidence 13578888888899999999999999999987654433221 122211 11223588988 899999999
Q ss_pred cEEEEEC---CcceEEeecCCccEEEEEEEE
Q 004404 724 RIRVVDG---IDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 724 ~IrVWD~---~~ll~~~~GH~~~V~sv~fs~ 751 (755)
...+|.. ......+.||.-.|..+++.+
T Consensus 340 ~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 340 QAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred ceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 9999984 556777899999999999876
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.63 E-value=2.9e-12 Score=138.29 Aligned_cols=268 Identities=25% Similarity=0.450 Sum_probs=198.5
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeeccc-CCEEEEEE-cCCCC-EEEEEEC-CCcEEEEeCcC-Cceeeeee
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKF-SLDGR-YLASAGE-DCVIHVWQVVE-SERKGELL 495 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~-~~I~sI~f-Spdg~-~LaTgs~-DGtVrVWdl~t-~~~~~~l~ 495 (755)
...+..+..++.+.+|+..... .....+.++. ..+..+.+ ++++. +++..+. |+.+.+|++.. ......+
T Consensus 77 ~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~- 151 (466)
T COG2319 77 GELLLSGSSDGTIKLWDLDNGE----KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL- 151 (466)
T ss_pred CcEEEEecCCCcEEEEEcCCCc----eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE-
Confidence 3445666689999999987654 1223344433 47888888 88887 5555455 99999999987 4444443
Q ss_pred cccccCccccEEEeecCCCCceeccccC-CCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEEE
Q 004404 496 EKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDL 573 (755)
Q Consensus 496 ~~~~~~~~~~v~~v~~s~dg~~l~~~s~-d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L 573 (755)
..|...+..+.+++++..++.+.. ++.+ .+|... .+.+..+.+|...|.++
T Consensus 152 ----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 152 ----EGHSESVTSLAFSPDGKLLASGSSLDGTI-----------------------KLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred ----ecCcccEEEEEECCCCCEEEecCCCCCce-----------------------EEEEcCCCceEEeeccCCCceEEE
Confidence 566677778999999886666653 5544 344443 46777888899999999
Q ss_pred EecCCc--EEEEEeCCCcEEEEECCCCcEEE-Eee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE-E-Eecc
Q 004404 574 SWSKSQ--HLLSSSMDKTVRLWHLSSKTCLK-IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-V-DWND 647 (755)
Q Consensus 574 ~~spd~--~LaSgs~DgtVrLWDl~t~~~~~-~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~-v-~~~~ 647 (755)
+|+|++ .+++++.|++|++||...+..+. .+. |...+ -..|+| ++.++++++.|+.+++|++..... . ....
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEec
Confidence 999885 45555999999999999888877 454 77665 338999 778899999999999999987654 3 3345
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE-ECCCcEE
Q 004404 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRIR 726 (755)
Q Consensus 648 ~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg-s~Dg~Ir 726 (755)
+...+.++.|.|++..+++++.|+.+.+|++.......... ...|...|..+.|.+++. .++.+ ..|+.++
T Consensus 283 ~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~ 354 (466)
T COG2319 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-------LKGHEGPVSSLSFSPDGS-LLVSGGSDDGTIR 354 (466)
T ss_pred CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-------ecccCCceEEEEECCCCC-EEEEeecCCCcEE
Confidence 67899999999999899889999889999988877665432 236777899999943323 45555 6889999
Q ss_pred EEEC
Q 004404 727 VVDG 730 (755)
Q Consensus 727 VWD~ 730 (755)
+|+.
T Consensus 355 ~~~~ 358 (466)
T COG2319 355 LWDL 358 (466)
T ss_pred eeec
Confidence 9994
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.62 E-value=4.2e-15 Score=155.83 Aligned_cols=159 Identities=19% Similarity=0.320 Sum_probs=134.9
Q ss_pred EEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCC-------cEEEEe-ecCCceEEEEEeeCCCcEEEEEECCC
Q 004404 561 CSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK-------TCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDA 630 (755)
Q Consensus 561 ~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~-------~~~~~~-~h~~~VtsVafsP~dg~~LaSgS~Dg 630 (755)
-.+.||.++|.++.|+|- +.|++||.|-+|.||++..+ +++..+ +|...|.-|+|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 346799999999999993 88999999999999998754 334444 49999999999997788999999999
Q ss_pred cEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCC-CeEEEEEc
Q 004404 631 KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR-KITGFQFA 709 (755)
Q Consensus 631 tVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~-~Vtsl~fs 709 (755)
+|.|||+.+++.+....|...|++++|+.||.+|++.+.|..|||||.++++.+..- .+|.+ .-..+.|-
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~---------~~heG~k~~Raifl 225 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG---------VAHEGAKPARAIFL 225 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec---------ccccCCCcceeEEe
Confidence 999999999998877779999999999999999999999999999999999988753 25654 34556788
Q ss_pred cCCCeEEEEEE----CCCcEEEEEC
Q 004404 710 PGSSSEVLVTS----ADSRIRVVDG 730 (755)
Q Consensus 710 Pdg~~~L~sgs----~Dg~IrVWD~ 730 (755)
.++. +++++ .+.+|-|||.
T Consensus 226 ~~g~--i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 226 ASGK--IFTTGFSRMSERQIALWDP 248 (472)
T ss_pred ccCc--eeeeccccccccceeccCc
Confidence 8886 55543 4788999994
No 170
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.60 E-value=2.1e-14 Score=157.34 Aligned_cols=242 Identities=15% Similarity=0.191 Sum_probs=170.7
Q ss_pred CCCcEEEEeeCCCC-cccceeeeeEeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCcccc
Q 004404 428 QERVRVRQYGKSCK-DLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM 505 (755)
Q Consensus 428 ~~dg~Vriwd~~~~-~~~~~~~~q~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~ 505 (755)
+..|.|.||++... .+....+ -.|. ....|+.+.|.| |...||.++.||.|+||.+..+.....
T Consensus 600 g~gG~iai~el~~PGrLPDgv~-p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~------------ 665 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVM-PGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN------------ 665 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccc-cccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc------------
Confidence 45789999998643 2222111 1111 456799999999 778999999999999999865432111
Q ss_pred EEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEE
Q 004404 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLS 583 (755)
Q Consensus 506 v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaS 583 (755)
...+-..+.+|...|+.|.|+|- +.|++
T Consensus 666 --------------------------------------------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 666 --------------------------------------------------EMTPEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred --------------------------------------------------cCCcceeeecccceEEEEEecchhhhHhhh
Confidence 12345567889999999999995 88999
Q ss_pred EeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-Eecc--CCCCEEEEEEcc
Q 004404 584 SSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWND--LHEMVTAACYTP 659 (755)
Q Consensus 584 gs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~--~~~~VtsvafSP 659 (755)
++.|-+|+|||+.+++....+. |.+.|..++|+| +|+.+++.+.||+|++|+-+.++.- ..-. ....-..+.|.-
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC 774 (1012)
T ss_pred hhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe
Confidence 9999999999999988777775 999999999999 9999999999999999998876532 2111 112335677888
Q ss_pred CCCEEEEEECC----CcEEEEECCCCeeee--ccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC---
Q 004404 660 DGQGALVGSYK----GSCHLYNTSENKLQQ--KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--- 730 (755)
Q Consensus 660 dG~~LasGs~D----G~I~lwDl~~~~~~~--~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--- 730 (755)
+|+++++.+.| ..|.+||..+-.+.. +..+... -.+.--.+.+|...++++|-.|..|.+|..
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva--------ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA--------PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc--------CccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 99999887665 458889887644222 1111110 011111245677768888889999999982
Q ss_pred CcceEEeecCCc
Q 004404 731 IDLVHKFKGENY 742 (755)
Q Consensus 731 ~~ll~~~~GH~~ 742 (755)
...+..+..|..
T Consensus 847 sPy~lpl~~f~s 858 (1012)
T KOG1445|consen 847 SPYLLPLAPFMS 858 (1012)
T ss_pred CceeeecccccC
Confidence 234444444433
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.60 E-value=4e-14 Score=141.96 Aligned_cols=277 Identities=16% Similarity=0.149 Sum_probs=179.5
Q ss_pred CCcEEEEeCCCcEEEEeeCCCCcccceeeeeEee-cccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccc
Q 004404 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (755)
Q Consensus 420 s~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~-gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~ 498 (755)
.+..+++|...|.|.+|.+++..-... +. .|...|+.+.--|+ ..|.|-+.|+.+.+|++.....+..
T Consensus 24 a~~rL~sg~~~G~V~~w~lqt~r~~~~-----~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i----- 92 (323)
T KOG0322|consen 24 ANERLMSGLSVGIVKMWVLQTERDLPL-----IRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI----- 92 (323)
T ss_pred cchhhhcccccceEEEEEeecCccchh-----hhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE-----
Confidence 345589999999999999986554333 34 57889999999987 4688999999999999866432221
Q ss_pred ccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd 578 (755)
+.-.+..+.|.+-. +...............+.... ...........+.....+ -.+..+.+.+..|...
T Consensus 93 ---~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde--~h~~D~g~~tqv~i~dd~----~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 93 ---HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE--THKQDGGDTTQVQIADDS----ERSKLGSVMCQDKDHA 161 (323)
T ss_pred ---eeeeccccccccce--eccCCCcchhheecCCcccch--hhhhccCccceeEccCch----hccccCceeeeecccc
Confidence 11111111111100 000000000000000000000 000000000000000111 1234567788776543
Q ss_pred ----cEEEEEeCCCcEEEEECCCCcEEEEe-----------ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC--c
Q 004404 579 ----QHLLSSSMDKTVRLWHLSSKTCLKIF-----------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--Q 641 (755)
Q Consensus 579 ----~~LaSgs~DgtVrLWDl~t~~~~~~~-----------~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~--~ 641 (755)
-.|+.|.++|.|.+||+.++..+..| .|..+|.++.|.+ --+.=++|+.+.++..|++... .
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCc
Confidence 34778889999999999987433222 3889999999988 5566778888999999988643 2
Q ss_pred EE---EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 642 VV---DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 642 ~v---~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
+. .....+-.|..+.+.||++.+|+++.|++||+|..++...+..+ +.|...|++++|+|+.+ ++++
T Consensus 241 lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL---------kyHsagvn~vAfspd~~-lmAa 310 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL---------KYHSAGVNAVAFSPDCE-LMAA 310 (323)
T ss_pred ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh---------hhhhcceeEEEeCCCCc-hhhh
Confidence 21 22223457889999999999999999999999999999887653 47999999999999976 8999
Q ss_pred EECCCcEEEEE
Q 004404 719 TSADSRIRVVD 729 (755)
Q Consensus 719 gs~Dg~IrVWD 729 (755)
++.|.+|.+|+
T Consensus 311 askD~rISLWk 321 (323)
T KOG0322|consen 311 ASKDARISLWK 321 (323)
T ss_pred ccCCceEEeee
Confidence 99999999997
No 172
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=8.8e-14 Score=157.33 Aligned_cols=232 Identities=14% Similarity=0.129 Sum_probs=162.1
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECC---CcEEEEeCcCCceeeeeecccccCcccc
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNM 505 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~D---GtVrVWdl~t~~~~~~l~~~~~~~~~~~ 505 (755)
.+..|++||...... +.+..|...|...+|+|||++|+..+.+ ..|.+||+.+++...
T Consensus 182 ~~~~i~i~d~dg~~~------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------------- 242 (429)
T PRK01742 182 QPYEVRVADYDGFNQ------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------------- 242 (429)
T ss_pred ceEEEEEECCCCCCc------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-------------
Confidence 357889998764332 3456788899999999999999988754 369999986543211
Q ss_pred EEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEE
Q 004404 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSS 584 (755)
Q Consensus 506 v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSg 584 (755)
+..+.+|. ..++|+|+ .+|+.+
T Consensus 243 ------------------------------------------------------l~~~~g~~---~~~~wSPDG~~La~~ 265 (429)
T PRK01742 243 ------------------------------------------------------VASFRGHN---GAPAFSPDGSRLAFA 265 (429)
T ss_pred ------------------------------------------------------EecCCCcc---CceeECCCCCEEEEE
Confidence 11122232 25789998 456655
Q ss_pred -eCCCcEEEE--ECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEE-CCCcEEEEECCC--CcEEEeccCCCCEEEEEEc
Q 004404 585 -SMDKTVRLW--HLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPE--RQVVDWNDLHEMVTAACYT 658 (755)
Q Consensus 585 -s~DgtVrLW--Dl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWDl~t--~~~v~~~~~~~~VtsvafS 658 (755)
+.+|.+.|| |+.++...+...+...+....|+| |++.|+..+ .++...||++.. +.. ....+.. ....|+
T Consensus 266 ~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~~~--~~~~~S 341 (429)
T PRK01742 266 SSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGA-SLVGGRG--YSAQIS 341 (429)
T ss_pred EecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCe-EEecCCC--CCccCC
Confidence 467765554 666666555445777788999999 888777655 578888887643 333 2223332 457899
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE----CCcce
Q 004404 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD----GIDLV 734 (755)
Q Consensus 659 PdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD----~~~ll 734 (755)
|||++|+..+.++ +.+||+.++....... .+ ....+.|+|+|. +|+.++.++.+.+|+ .+..+
T Consensus 342 pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---------~~--~~~~~~~sPdG~-~i~~~s~~g~~~~l~~~~~~G~~~ 408 (429)
T PRK01742 342 ADGKTLVMINGDN-VVKQDLTSGSTEVLSS---------TF--LDESPSISPNGI-MIIYSSTQGLGKVLQLVSADGRFK 408 (429)
T ss_pred CCCCEEEEEcCCC-EEEEECCCCCeEEecC---------CC--CCCCceECCCCC-EEEEEEcCCCceEEEEEECCCCce
Confidence 9999999887654 6669998886543211 11 224578999998 788888899888876 47889
Q ss_pred EEeecCCccEEEEEEEEEE
Q 004404 735 HKFKGENYVQYMVCIVLFF 753 (755)
Q Consensus 735 ~~~~GH~~~V~sv~fs~F~ 753 (755)
+++.+|...+...+|+|++
T Consensus 409 ~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 409 ARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred EEccCCCCCCCCcccCCCC
Confidence 9999999889999988864
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.58 E-value=1.6e-13 Score=140.95 Aligned_cols=270 Identities=15% Similarity=0.176 Sum_probs=187.5
Q ss_pred EEEeCCCcEEEEeeCCCCcccce-------eeeeEee-cccCCEEEEEEc-------CCCCEEEEEECCCcEEEEeCcCC
Q 004404 424 SFHGQERVRVRQYGKSCKDLTAL-------YKCQEIQ-AHNGSIWSIKFS-------LDGRYLASAGEDCVIHVWQVVES 488 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~~~~~~~-------~~~q~l~-gH~~~I~sI~fS-------pdg~~LaTgs~DGtVrVWdl~t~ 488 (755)
+++.+.+..+++|++........ .+..+++ .....|...+|- |+..++|+.+.|.-|++||..++
T Consensus 64 iL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG 143 (406)
T KOG2919|consen 64 ILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTG 143 (406)
T ss_pred EEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeecccc
Confidence 45667888889998754322211 1111111 123567777775 56779999999999999999999
Q ss_pred ceeeeeecccccCccccEEEeecCCCCceeccccCCCceeee--cccccccccccccCcccccceeeecCCCceEEeccC
Q 004404 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK--RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566 (755)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~--~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH 566 (755)
+....+.............++.|+|||..|.++.....-.+. +.++... ++. ...+--.+.
T Consensus 144 ~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~--------------vy~---t~~~~k~gq 206 (406)
T KOG2919|consen 144 KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCP--------------VYT---TVTKGKFGQ 206 (406)
T ss_pred ccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCc--------------chh---hhhcccccc
Confidence 887776443334445667799999999999988554332111 1111110 000 000112234
Q ss_pred CCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEEC-CCcEEEEECCCCc-
Q 004404 567 LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPERQ- 641 (755)
Q Consensus 567 ~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~-DgtVrIWDl~t~~- 641 (755)
.+-|.+++|+|- +.++.++....+-|+.-....++.++. |.+.|+.++|.+ +|+.|++|+. |.+|..||++.-.
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccc
Confidence 667899999995 689999999999999988888888886 999999999999 8999988875 7889999998643
Q ss_pred EE-EeccCC---CCEEEEEEccCCCEEEEEECCCcEEEEECCC-CeeeeccccccccccccCCCCCeEEEEEccCCCeEE
Q 004404 642 VV-DWNDLH---EMVTAACYTPDGQGALVGSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (755)
Q Consensus 642 ~v-~~~~~~---~~VtsvafSPdG~~LasGs~DG~I~lwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L 716 (755)
++ .+..|. ..-.-....|++++|++|+.+|.|++||+.+ +.....+ ..|...|++++++|--+ ++
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~---------~~~sd~vNgvslnP~mp-il 355 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT---------GNYSDTVNGVSLNPIMP-IL 355 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc---------ccccccccceecCcccc-ee
Confidence 22 222222 2333456678999999999999999999998 4434332 36888999999999855 55
Q ss_pred EEEEC
Q 004404 717 LVTSA 721 (755)
Q Consensus 717 ~sgs~ 721 (755)
++++.
T Consensus 356 atssG 360 (406)
T KOG2919|consen 356 ATSSG 360 (406)
T ss_pred eeccC
Confidence 55544
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=6.9e-14 Score=146.11 Aligned_cols=257 Identities=15% Similarity=0.171 Sum_probs=182.9
Q ss_pred eeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeee--eecccccCccccEEEeecCCCCceeccccCCC
Q 004404 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE--LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (755)
Q Consensus 448 ~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~--l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~ 525 (755)
+.+.+.+|.+.|.+|.|+.++++||+|+.|..++||++...-.... .+......|...|++++|....+.+.++...+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3456789999999999999999999999999999999864322111 11222455678899999999999999887777
Q ss_pred ceeeecccccccccccccCcccccceeeecCCCceEEeccCC---CCEEEEEecCC-cEEEEEeCCCcEEEEECCCCc-E
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL---DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-C 600 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~---~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~-~ 600 (755)
.+.+.. +..+...-+..|. +.|+.|..+|. +.|++.+.+|.|.+||.+... .
T Consensus 128 ~VI~HD-----------------------iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 128 TVIKHD-----------------------IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred eeEeee-----------------------cccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 663222 1112222222343 58999999995 899999999999999998654 2
Q ss_pred ---EEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE-----------------------------------
Q 004404 601 ---LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV----------------------------------- 642 (755)
Q Consensus 601 ---~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~----------------------------------- 642 (755)
+..-........+.|+|....+|++.+..+-+-+||++..+-
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 222235667889999998888999999999999999864320
Q ss_pred ---------------EEeccCC-------CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeee--------------c
Q 004404 643 ---------------VDWNDLH-------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ--------------K 686 (755)
Q Consensus 643 ---------------v~~~~~~-------~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~--------------~ 686 (755)
+-...|. ..+.+++|.-|- .+++|+.+-.|++|.+....... .
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 0000111 134566666443 48899999999999885321111 1
Q ss_pred cccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+.+......+++|..-++.+.|+|... +|++.+-.+.++||.
T Consensus 344 ~~i~~~~~VLrGHRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 344 IFIEKELTVLRGHRSVPNQVRFSQHNN-LLVSSGVENSFKLWS 385 (609)
T ss_pred heecceeEEEecccccccceeecCCcc-eEeccchhhheeccc
Confidence 111222245689999999999999875 788889999999998
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.58 E-value=4e-14 Score=155.80 Aligned_cols=267 Identities=15% Similarity=0.204 Sum_probs=202.4
Q ss_pred HHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeee
Q 004404 341 IVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSAT 417 (755)
Q Consensus 341 ~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~ 417 (755)
-|..++|.|+ +.-+..|+.. ++|.+.|..++.+| +|.+.|..|+.+-+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rll--iyD~ndG~llqtLK-gHKDtVycVAys~dGk------------------------ 66 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLL--VYDTSDGTLLQPLK-GHKDTVYCVAYAKDGK------------------------ 66 (1081)
T ss_pred chheeEECCCCceEEEecCCEEE--EEeCCCcccccccc-cccceEEEEEEccCCc------------------------
Confidence 6899999998 3334445554 69999999999999 8999999998887653
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecc
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~ 497 (755)
.+++|..|..|.+|+.+ +..+.+ ..|.+.|.||.|+|-...|+||+-. ..-+|........
T Consensus 67 -----rFASG~aDK~VI~W~~k---lEG~Lk----YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~------ 127 (1081)
T KOG1538|consen 67 -----RFASGSADKSVIIWTSK---LEGILK----YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS------ 127 (1081)
T ss_pred -----eeccCCCceeEEEeccc---ccceee----eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH------
Confidence 24678899999999754 333333 2699999999999999999999874 4678986543221
Q ss_pred cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCc---eEEeccCCCCEEEEE
Q 004404 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP---ICSFQGHLDDVLDLS 574 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~---i~~l~gH~~~V~~L~ 574 (755)
.......+.+.+|..||.+++.+..++.+.+.. ..+++ +..--|...+|++++
T Consensus 128 -K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-----------------------k~gEek~~I~Rpgg~Nspiwsi~ 183 (1081)
T KOG1538|consen 128 -KHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-----------------------KNGEEKVKIERPGGSNSPIWSIC 183 (1081)
T ss_pred -hhhhheeEEEeeecCCCcEEEEeccCceEEeec-----------------------CCCCcceEEeCCCCCCCCceEEE
Confidence 123345678899999999999999888874331 12222 222235678999999
Q ss_pred ecCC------cEEEEEeCCCcEEEEECCCCcEEE-EeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc
Q 004404 575 WSKS------QHLLSSSMDKTVRLWHLSSKTCLK-IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647 (755)
Q Consensus 575 ~spd------~~LaSgs~DgtVrLWDl~t~~~~~-~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~ 647 (755)
|+|+ ..+++.....++..+.+. |+.+. .-...-...|+.+-| +|.+++.|+.|+.+.+|-...-.+-..-.
T Consensus 184 ~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~GvrLGTvg~ 261 (1081)
T KOG1538|consen 184 WNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTRDGVRLGTVGE 261 (1081)
T ss_pred ecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEeecCeEEeeccc
Confidence 9995 468888888999998876 33333 222444567899999 99999999999999999754433334445
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 648 ~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
...+|+.++..|++++++.|+.||+|--|++.
T Consensus 262 ~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 262 QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 66799999999999999999999999999874
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.57 E-value=1.3e-13 Score=139.75 Aligned_cols=158 Identities=16% Similarity=0.243 Sum_probs=126.1
Q ss_pred cCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcE----EEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECC
Q 004404 565 GHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTC----LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (755)
Q Consensus 565 gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~----~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~ 638 (755)
.+.+++++..|+.- +++.+++-|-++.|||+.++.. .+.+.|...|..|+|....-+.|++++.||.||+||++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 35668899999873 8899999999999999998732 34456999999999998445789999999999999998
Q ss_pred CCcEEEe---ccC-CCCEEEEEEccC-CCEEEEEEC-CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 639 ERQVVDW---NDL-HEMVTAACYTPD-GQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 639 t~~~v~~---~~~-~~~VtsvafSPd-G~~LasGs~-DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
..+--.. -.. +.+...++|++. -+++|+-.. ...|.|.|++...... ..+++|...|++++|.|..
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv--------a~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV--------ARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce--------ehhhcCcccccceEecCCC
Confidence 8653322 122 457889999984 467777444 4569999998654322 3456999999999999999
Q ss_pred CeEEEEEECCCcEEEEEC
Q 004404 713 SSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 713 ~~~L~sgs~Dg~IrVWD~ 730 (755)
+..|+++++|.++-+||.
T Consensus 300 ~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDL 317 (364)
T ss_pred CceeeecCCcceEEEEec
Confidence 889999999999999993
No 177
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.56 E-value=3.2e-13 Score=153.87 Aligned_cols=277 Identities=14% Similarity=0.135 Sum_probs=187.8
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCcee-eeeecccccCccccEEE
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERK-GELLEKQEDGHLNMLLL 508 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~-~~l~~~~~~~~~~~v~~ 508 (755)
+.+.+|+...+ ....+. -.-...|+|++|+| +..+||.|..+|.|.+||+..+... ..........|..++..
T Consensus 222 ~~~~vW~~~~p-~~Pe~~----~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~ 296 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELV----LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA 296 (555)
T ss_pred ceEEEEecCCC-CCceEE----EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence 47899999876 322222 13567899999999 6678999999999999999877653 22233345667777777
Q ss_pred eecCCCCce--eccccCCCceeeecccccccccccccCcccccceeeecCCCc--eEEeccCCCCEEEEEecCC--cEEE
Q 004404 509 ANGSPEPTS--LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP--ICSFQGHLDDVLDLSWSKS--QHLL 582 (755)
Q Consensus 509 v~~s~dg~~--l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~--i~~l~gH~~~V~~L~~spd--~~La 582 (755)
+.|..+..- +++.+.|+.+..|.... ...+.....+..+. -..+ .-...++++.|.+. ..|+
T Consensus 297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~-----------l~~P~e~~~~~~~~~~~~~~-~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 297 VVWLQNEHNTEFFSLSSDGSICSWDTDM-----------LSLPVEGLLLESKKHKGQQS-SKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred EEEeccCCCCceEEEecCCcEeeeeccc-----------cccchhhccccccccccccc-ccccceeeEeeccCCCceEE
Confidence 777665333 66666677765552211 11110000000000 0011 12245889999986 7899
Q ss_pred EEeCCCcEEEEECC---CCc-----EEEEe-ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECC-CCcEE-EeccCCCC
Q 004404 583 SSSMDKTVRLWHLS---SKT-----CLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-ERQVV-DWNDLHEM 651 (755)
Q Consensus 583 Sgs~DgtVrLWDl~---t~~-----~~~~~-~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~-t~~~v-~~~~~~~~ 651 (755)
.|+.+|.|.--... ... .+..+ .|.++|+++.++|...+.|++++ |.+|+||... ...++ .+......
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~ 443 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDY 443 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccce
Confidence 99999999873332 222 12223 39999999999997667777777 9999999876 44444 45555667
Q ss_pred EEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 652 VTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 652 VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
|++++|||-. ..++++..+|.|.|||+........... +.+....+.+.|++.|+ .|++|...|+|.+|+.
T Consensus 444 v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~-------~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 444 VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ-------KVCSPALTRVRWSPNGK-LLAVGDANGTTHILKL 515 (555)
T ss_pred eeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc-------cccccccceeecCCCCc-EEEEecCCCcEEEEEc
Confidence 9999999955 5777788899999999987665543321 22356677888899888 8999999999999995
Q ss_pred Ccc
Q 004404 731 IDL 733 (755)
Q Consensus 731 ~~l 733 (755)
.+.
T Consensus 516 ~~~ 518 (555)
T KOG1587|consen 516 SES 518 (555)
T ss_pred Cch
Confidence 433
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2.1e-14 Score=156.73 Aligned_cols=236 Identities=18% Similarity=0.258 Sum_probs=169.3
Q ss_pred EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeee
Q 004404 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 451 ~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
++.-|.+.|..+.|.|-...|++|+.||+|++|+++......
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~-------------------------------------- 330 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSA-------------------------------------- 330 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcc--------------------------------------
Confidence 567899999999999999999999999999999983311000
Q ss_pred cccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCC----------c
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK----------T 599 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~----------~ 599 (755)
...-+++.+|.+|.++|.|+++.++ ..+++|+.||+|+.|++... .
T Consensus 331 -----------------------~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v 387 (577)
T KOG0642|consen 331 -----------------------EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV 387 (577)
T ss_pred -----------------------ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcch
Confidence 0123688999999999999999998 78999999999999965421 1
Q ss_pred EEEEe-ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe--ccCCCCEEEEEEccCC-CEEEEEECCCcEEE
Q 004404 600 CLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW--NDLHEMVTAACYTPDG-QGALVGSYKGSCHL 675 (755)
Q Consensus 600 ~~~~~-~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~--~~~~~~VtsvafSPdG-~~LasGs~DG~I~l 675 (755)
....+ +|.+.|+.+++++ ....|++++.||+|++|+.....+..+ ...++..+++.+-... ...++...-+.--+
T Consensus 388 l~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~ 466 (577)
T KOG0642|consen 388 LSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSI 466 (577)
T ss_pred hccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccc
Confidence 22233 5999999999999 788899999999999999887766322 2223456666665433 22222222233333
Q ss_pred EECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+++.....+..+.... .........+.-+.++|.++ +.+++-.|+.|+++| +++++.....|...+.++++.+
T Consensus 467 ~~~ev~s~~~~~~s~~--~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ 541 (577)
T KOG0642|consen 467 DDMEVVSDLLIFESSA--SPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP 541 (577)
T ss_pred hhhhhhhheeeccccC--CCcccccCccceEEecCCCC-eeEecccCCceecccccccccchheeeccceecceeecC
Confidence 4443333322221100 00011224578888999987 899999999999999 6899999999999999998854
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.54 E-value=4.2e-13 Score=136.03 Aligned_cols=224 Identities=20% Similarity=0.248 Sum_probs=160.9
Q ss_pred EEEEeeCCCCccc----ceeeeeEee-cccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCce-eeeeecccccCcccc
Q 004404 432 RVRQYGKSCKDLT----ALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER-KGELLEKQEDGHLNM 505 (755)
Q Consensus 432 ~Vriwd~~~~~~~----~~~~~q~l~-gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~-~~~l~~~~~~~~~~~ 505 (755)
.+.+|.+...... .+.++..|. .|-+.|.||.|.|++..||+-. |..|.+|++.+... ..++.......+...
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS 172 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence 3567776533221 122333343 4667999999999999998876 88999999988776 566665555666777
Q ss_pred EEEeecCC--CCceeccccCCCceeeecccccccccccccCcccccceeeecCCCce-EEeccCCCCEEEEEecCC--cE
Q 004404 506 LLLANGSP--EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI-CSFQGHLDDVLDLSWSKS--QH 580 (755)
Q Consensus 506 v~~v~~s~--dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i-~~l~gH~~~V~~L~~spd--~~ 580 (755)
+...+|+| ++..+++.... .+..+... +.+.. ..-.+|...|.+|.|+|+ .+
T Consensus 173 ftsg~WspHHdgnqv~tt~d~-tl~~~D~R----------------------T~~~~~sI~dAHgq~vrdlDfNpnkq~~ 229 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDS-TLQFWDLR----------------------TMKKNNSIEDAHGQRVRDLDFNPNKQHI 229 (370)
T ss_pred ecccccCCCCccceEEEeCCC-cEEEEEcc----------------------chhhhcchhhhhcceeeeccCCCCceEE
Confidence 88889998 46666665333 33222111 11111 223468888999999998 56
Q ss_pred EEEEeCCCcEEEEECCC-CcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-------------------
Q 004404 581 LLSSSMDKTVRLWHLSS-KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE------------------- 639 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t-~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t------------------- 639 (755)
|++|+.||.|+|||.+. ..+++.+. |...|.+|.|+|....+|++|+.|..|.+|....
T Consensus 230 lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~ 309 (370)
T KOG1007|consen 230 LVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDE 309 (370)
T ss_pred EEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcch
Confidence 99999999999999985 45677775 9999999999998889999999999999996521
Q ss_pred -----------CcEEEeccCCCCEEEEEEccCCCE-EEEEECCCcEEEEECC
Q 004404 640 -----------RQVVDWNDLHEMVTAACYTPDGQG-ALVGSYKGSCHLYNTS 679 (755)
Q Consensus 640 -----------~~~v~~~~~~~~VtsvafSPdG~~-LasGs~DG~I~lwDl~ 679 (755)
+.+.....|...|++++|+.-..+ +|+-+.||++.|=.+.
T Consensus 310 dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 310 DSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred hhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 112234456689999999985555 5567899999886554
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.54 E-value=3.8e-13 Score=153.27 Aligned_cols=255 Identities=19% Similarity=0.197 Sum_probs=178.6
Q ss_pred ceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceee-eeEeecccCCEEEEEEcCCC--CEEEEEECCCcEEEEeCcC
Q 004404 411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYK-CQEIQAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVE 487 (755)
Q Consensus 411 ~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~-~q~l~gH~~~I~sI~fSpdg--~~LaTgs~DGtVrVWdl~t 487 (755)
...+......+.+++.|..+|.|.+||........... ......|..+|+.+.|..+- .-|++++.||.|..|++..
T Consensus 245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~ 324 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM 324 (555)
T ss_pred eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc
Confidence 34455566778899999999999999998776642222 22335799999999997644 4599999999999998865
Q ss_pred Cceeeeeeccc-------ccCccccEEEeecCCC-CceeccccCCCceee-ecccccccccccccCcccccceeeecCCC
Q 004404 488 SERKGELLEKQ-------EDGHLNMLLLANGSPE-PTSLSPKHLDNHLEK-KRRGRSINRKSLSLDHMVVPETVFALSDK 558 (755)
Q Consensus 488 ~~~~~~l~~~~-------~~~~~~~v~~v~~s~d-g~~l~~~s~d~~i~~-~~~~~~~~~~s~s~d~~~~~~~v~~~s~k 558 (755)
.....+..... .......+..+.|.+. ...++.+...|.+.. .+.+..... ....+
T Consensus 325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~---------------~~~~~ 389 (555)
T KOG1587|consen 325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP---------------EVSYK 389 (555)
T ss_pred cccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc---------------ccccc
Confidence 54422221111 1122334455666553 555666667776644 222211100 01224
Q ss_pred ceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECC-CCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEE
Q 004404 559 PICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS-SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (755)
Q Consensus 559 ~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~-t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrI 634 (755)
.+..+..|.+.|+++.++|= ..|++++ |.+|+||... ...++..+. +..+|++++|+|.....|+++..||.|.|
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~i 468 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDI 468 (555)
T ss_pred ccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence 45567789999999999995 4555555 9999999987 555655554 78889999999977789999999999999
Q ss_pred EECCCCc--EE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 004404 635 WSIPERQ--VV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 635 WDl~t~~--~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~ 681 (755)
||+.... ++ .........+.+.|++.|+.|++|...|.+++|++...
T Consensus 469 WDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 469 WDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 9996543 22 22222456677888889999999999999999999643
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.54 E-value=2.8e-13 Score=142.94 Aligned_cols=237 Identities=21% Similarity=0.340 Sum_probs=174.6
Q ss_pred cCCEEEEEEcCCCC-EEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 456 NGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 456 ~~~I~sI~fSpdg~-~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
..+|..+.|.++.. .||||+.|..|+||.+...+.... +.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~------------------------------~~--------- 53 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG------------------------------DM--------- 53 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC------------------------------ce---------
Confidence 35899999999776 999999999999999855432110 00
Q ss_pred cccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECC--------C-----C--
Q 004404 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS--------S-----K-- 598 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~--------t-----~-- 598 (755)
+-+.+..+..|...|+++.|+|+ ..|++|+.+|.|.+|... + .
T Consensus 54 ---------------------~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~ 112 (434)
T KOG1009|consen 54 ---------------------KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEK 112 (434)
T ss_pred ---------------------eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccc
Confidence 00234467789999999999999 789999999999999765 2 1
Q ss_pred -cEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe-ccCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 004404 599 -TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (755)
Q Consensus 599 -~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~-~~~~~~VtsvafSPdG~~LasGs~DG~I~l 675 (755)
...+.+. |...|..++|+| ++.++++++.|..+++||+..+++... ..|...+..++|.|-++++++-+.|...+.
T Consensus 113 w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 113 WVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred eEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccce
Confidence 1222333 899999999999 999999999999999999999998854 566779999999999999999888988888
Q ss_pred EECCCCeeeecccccc-ccccc---------cCCCCC----eEEEEEccCCCeEEEEEEC----CC-----cEEEEE---
Q 004404 676 YNTSENKLQQKSPINL-QNKKK---------RSHQRK----ITGFQFAPGSSSEVLVTSA----DS-----RIRVVD--- 729 (755)
Q Consensus 676 wDl~~~~~~~~~~i~~-~~~~~---------~~h~~~----Vtsl~fsPdg~~~L~sgs~----Dg-----~IrVWD--- 729 (755)
+.+...+......... +.... ..|... ...++|+|+|. +|++... .+ +.++|+
T Consensus 192 ~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~-llvtPag~~~~g~~~~~n~tYvfsrk~ 270 (434)
T KOG1009|consen 192 FSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS-LLVTPAGLFKVGGGVFRNTSYVFSRKD 270 (434)
T ss_pred eeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc-EEEcccceeeeCCceeeceeEeecccc
Confidence 8776655444332110 00000 112222 34567899997 5665422 23 345666
Q ss_pred CCcceEEeecCCccEEEEEEEEEEe
Q 004404 730 GIDLVHKFKGENYVQYMVCIVLFFF 754 (755)
Q Consensus 730 ~~~ll~~~~GH~~~V~sv~fs~F~f 754 (755)
...+...+.+.....+.+.|+|.+|
T Consensus 271 l~rP~~~lp~~~k~~lavr~~pVy~ 295 (434)
T KOG1009|consen 271 LKRPAARLPSPKKPALAVRFSPVYY 295 (434)
T ss_pred ccCceeecCCCCcceEEEEeeeeEE
Confidence 3567788888899999999999886
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=9.5e-14 Score=147.44 Aligned_cols=190 Identities=24% Similarity=0.343 Sum_probs=149.7
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccccccccc
Q 004404 460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK 539 (755)
Q Consensus 460 ~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~ 539 (755)
.+++|+.+|..|+||+.||++|||++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t------------------------------------------------- 178 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT------------------------------------------------- 178 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-------------------------------------------------
Confidence 7899999999999999999999999744321
Q ss_pred ccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCc-EEEEEeCCCcEEEEECCCCcEEEEee---cCCceEEEEE
Q 004404 540 SLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQF 615 (755)
Q Consensus 540 s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~-~LaSgs~DgtVrLWDl~t~~~~~~~~---h~~~VtsVaf 615 (755)
+.....|.++|.+|.|+|++ .|++-+.| ..+||++.++.++.... .+.....+.|
T Consensus 179 --------------------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF 237 (398)
T KOG0771|consen 179 --------------------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRF 237 (398)
T ss_pred --------------------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhcee
Confidence 22345688899999999995 78889999 99999999997777664 3344667778
Q ss_pred eeCCC-----cEEEEEECCCcEEEEECCCCc------EEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 616 NPVDD-----RYFISGSLDAKVRIWSIPERQ------VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 616 sP~dg-----~~LaSgS~DgtVrIWDl~t~~------~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
+. ++ .+++.-..-+.|+.|++.... ..+.....+.|++++.+++|++++.|+.+|.|-||+..+.+..
T Consensus 238 ~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~ 316 (398)
T KOG0771|consen 238 SV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL 316 (398)
T ss_pred cc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee
Confidence 77 55 233333445667777764322 1233344568999999999999999999999999999988877
Q ss_pred eccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+.. .+.|...||++.|+|+.. ++++.+.|.+++|..
T Consensus 317 ~~v--------k~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 317 QYV--------KEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTK 352 (398)
T ss_pred Eee--------hhhheeeeeeEEEcCCcC-cccccccCCceeEEE
Confidence 643 358999999999999987 789999999998876
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.53 E-value=2.3e-14 Score=161.43 Aligned_cols=288 Identities=15% Similarity=0.180 Sum_probs=198.4
Q ss_pred HHHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCC
Q 004404 329 IEEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTS 405 (755)
Q Consensus 329 ~~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~ 405 (755)
+.-..++.||...|.+.+|... +.+|++|..++ +|...++.....++ ||...|+.++.+.
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvK-iwS~et~~~lAs~r-Ghs~ditdlavs~--------------- 242 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVK-IWSMETARCLASCR-GHSGDITDLAVSS--------------- 242 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceee-eeeccchhhhccCC-CCccccchhccch---------------
Confidence 3445789999999999999876 89999999999 99988888777776 6666665444332
Q ss_pred ccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 004404 406 SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV 485 (755)
Q Consensus 406 ~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl 485 (755)
.....++++.|..|++|.+..+... ..|.+|+++|++|+|+|-. +.+.||++++||.
T Consensus 243 --------------~n~~iaaaS~D~vIrvWrl~~~~pv-----svLrghtgavtaiafsP~~----sss~dgt~~~wd~ 299 (1113)
T KOG0644|consen 243 --------------NNTMIAAASNDKVIRVWRLPDGAPV-----SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDA 299 (1113)
T ss_pred --------------hhhhhhhcccCceEEEEecCCCchH-----HHHhccccceeeeccCccc----cCCCCCceEeccc
Confidence 1233577899999999998866543 3467999999999999964 6788999999998
Q ss_pred cCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEecc
Q 004404 486 VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565 (755)
Q Consensus 486 ~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~g 565 (755)
.- ......+..........+..+.+...+.-+.++..++....+. ...+..
T Consensus 300 r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e----------------------------~~~l~~ 350 (1113)
T KOG0644|consen 300 RL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE----------------------------FEQLAW 350 (1113)
T ss_pred cc-cccccCCCCCCcccccceeeeeccccccccccccCCcccccch----------------------------hhHhhh
Confidence 61 1111111111111112223333333334444443333211000 001111
Q ss_pred CCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE
Q 004404 566 HLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (755)
Q Consensus 566 H~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~ 642 (755)
|...+.-+..+.+ .+.+++-.+-.+++|++.++...+.+. |..++..+.++|.+.....+++.||...|||+-.+.+
T Consensus 351 ~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 351 RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 2222222222222 455666677889999999999998886 9999999999998888889999999999999988876
Q ss_pred EEe-ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeee
Q 004404 643 VDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (755)
Q Consensus 643 v~~-~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~ 685 (755)
++. ...+..+...+|+++|+.++....-|.++|.....++.+.
T Consensus 431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred ceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcccc
Confidence 633 3446788899999999999999999999999876655443
No 184
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.53 E-value=1.1e-13 Score=142.40 Aligned_cols=248 Identities=19% Similarity=0.242 Sum_probs=180.9
Q ss_pred CCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCCceeeeeeccc
Q 004404 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (755)
Q Consensus 420 s~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~ 498 (755)
+..+++.|...|.|++.|..+.++..- +.+|.++|+.|+|.|+. ++|++||.|..||+|++++..++.-+ ..
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~-----~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf--GG 176 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKN-----YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF--GG 176 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccc-----eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe--cc
Confidence 445678888999999999987776544 46999999999999964 79999999999999999998887765 33
Q ss_pred ccCccccEEEeecCCCCceeccccCCCceeeecccc--ccccccc----ccCcccccceeeecCCCc--eE-EeccCCCC
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR--SINRKSL----SLDHMVVPETVFALSDKP--IC-SFQGHLDD 569 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~--~~~~~s~----s~d~~~~~~~v~~~s~k~--i~-~l~gH~~~ 569 (755)
..+|...+..+.++.++..++++..+..+..|.... ....... ..+....+ +.....+ .. +-.-|...
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p---fpt~~~~fp~fst~diHrny 253 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP---FPTPKTHFPDFSTTDIHRNY 253 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc---CCccccccccccccccccch
Confidence 578999999999999999999999999999888773 1111111 11111110 0000111 11 23457778
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEECCC-Cc-------------EEEEee-cCCceEEE--EEeeCCCcEEEEEECCCcE
Q 004404 570 VLDLSWSKSQHLLSSSMDKTVRLWHLSS-KT-------------CLKIFS-HSDYVTCI--QFNPVDDRYFISGSLDAKV 632 (755)
Q Consensus 570 V~~L~~spd~~LaSgs~DgtVrLWDl~t-~~-------------~~~~~~-h~~~VtsV--afsP~dg~~LaSgS~DgtV 632 (755)
|-|+.|-- +++++-+.++.|..|.... ++ .+..+. ....|+-| +|.| -.+.|+.|...|+|
T Consensus 254 VDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 254 VDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKV 331 (385)
T ss_pred HHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcE
Confidence 88888864 7788989999999998721 11 122222 33344444 4556 57899999999999
Q ss_pred EEEECCCCcEE--Eec---cCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 633 RIWSIPERQVV--DWN---DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 633 rIWDl~t~~~v--~~~---~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
.+||++...+. ... .....|...+|+.||..|+..+.|+.|.-||..
T Consensus 332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999886653 111 123578999999999999999999999999853
No 185
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.7e-12 Score=144.09 Aligned_cols=235 Identities=13% Similarity=0.056 Sum_probs=160.3
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC---CCcEEEEeCcCCceeeeeecccccCccccE
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---DCVIHVWQVVESERKGELLEKQEDGHLNML 506 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~---DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v 506 (755)
...|+++|...... +.+..+...+...+|+|||+.|+..+. +..|.+|++.+++...
T Consensus 178 ~~~l~~~d~dg~~~------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-------------- 237 (429)
T PRK03629 178 PYELRVSDYDGYNQ------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-------------- 237 (429)
T ss_pred ceeEEEEcCCCCCC------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------
Confidence 44788888764432 223457778999999999998887643 3468888875543111
Q ss_pred EEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCc-EEEEE-
Q 004404 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLLSS- 584 (755)
Q Consensus 507 ~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~-~LaSg- 584 (755)
+..+.+| +..+.|+|++ +|+..
T Consensus 238 -----------------------------------------------------l~~~~~~---~~~~~~SPDG~~La~~~ 261 (429)
T PRK03629 238 -----------------------------------------------------VASFPRH---NGAPAFSPDGSKLAFAL 261 (429)
T ss_pred -----------------------------------------------------ccCCCCC---cCCeEECCCCCEEEEEE
Confidence 0011122 2346788884 45433
Q ss_pred eCCC--cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC-Cc--EEEEECCCCcEEEeccCCCCEEEEEEcc
Q 004404 585 SMDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-AK--VRIWSIPERQVVDWNDLHEMVTAACYTP 659 (755)
Q Consensus 585 s~Dg--tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D-gt--VrIWDl~t~~~v~~~~~~~~VtsvafSP 659 (755)
+.++ .|++||+.+++..+...+...+....|+| |++.|+..+.+ +. |.++|+.++....+..........+|+|
T Consensus 262 ~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp 340 (429)
T PRK03629 262 SKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS 340 (429)
T ss_pred cCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC
Confidence 4444 59999999888766655666788999999 99988877764 44 5555777776655544445567889999
Q ss_pred CCCEEEEEECC---CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCc---EEEEE-CCc
Q 004404 660 DGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR---IRVVD-GID 732 (755)
Q Consensus 660 dG~~LasGs~D---G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~---IrVWD-~~~ 732 (755)
||++|+..+.+ ..|++||+.++....... . .......|+|||. +|+.++.++. +.+++ .+.
T Consensus 341 DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~---------~--~~~~~p~~SpDG~-~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 341 DGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD---------T--FLDETPSIAPNGT-MVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEEeCC---------C--CCCCCceECCCCC-EEEEEEcCCCceEEEEEECCCC
Confidence 99999886543 358899998876543210 1 1233578999998 6777776664 67777 477
Q ss_pred ceEEeecCCccEEEEEEEEEE
Q 004404 733 LVHKFKGENYVQYMVCIVLFF 753 (755)
Q Consensus 733 ll~~~~GH~~~V~sv~fs~F~ 753 (755)
....+.+|...+...+|+||+
T Consensus 409 ~~~~l~~~~~~~~~p~Wsp~~ 429 (429)
T PRK03629 409 FKARLPATDGQVKFPAWSPYL 429 (429)
T ss_pred CeEECccCCCCcCCcccCCCC
Confidence 788899998889988888763
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.52 E-value=3e-14 Score=160.54 Aligned_cols=247 Identities=18% Similarity=0.297 Sum_probs=189.9
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
++.|.+|.++|+|+.|...|.+++||+.|..|+||.+++..+.... .||...+..++.+.+..++++++.+..|
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-----rGhs~ditdlavs~~n~~iaaaS~D~vI- 256 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-----RGHSGDITDLAVSSNNTMIAAASNDKVI- 256 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-----CCCccccchhccchhhhhhhhcccCceE-
Confidence 4457799999999999999999999999999999999988877765 7888889888888888888888888777
Q ss_pred eecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEE-----
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLK----- 602 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~----- 602 (755)
.+|.+ .+.++..+.||++.|++|+|+|-. +.+.||++++||.+-.-.+.
T Consensus 257 ----------------------rvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 257 ----------------------RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred ----------------------EEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCC
Confidence 44444 567888999999999999999944 88899999999987211111
Q ss_pred EeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCC
Q 004404 603 IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 603 ~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~ 681 (755)
.+....-+.++.|-. ++..+++++.|+.-+.|.+...... ...+.-+.++.+- .+.+++-.+-.+++|++.++
T Consensus 312 ~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~~-----~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLAWR-----SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG 385 (1113)
T ss_pred Ccccccceeeeeccc-cccccccccCCcccccchhhHhhhh-----ccceEEEeccccccccceeeeeeeEeeeeecccc
Confidence 112446678888887 8889999999999999986542211 1111112222121 45666667788999999999
Q ss_pred eeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEE-eecCC
Q 004404 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHK-FKGEN 741 (755)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~-~~GH~ 741 (755)
.+.+.. .+|...+..+.++|-++...++++.||.+.|||. +..++. +.||-
T Consensus 386 ~l~H~l---------~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~ 439 (1113)
T KOG0644|consen 386 QLLHNL---------MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG 439 (1113)
T ss_pred hhhhhh---------cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc
Confidence 888753 4899999999999988877888999999999994 334443 44543
No 187
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=7.7e-14 Score=149.85 Aligned_cols=275 Identities=20% Similarity=0.273 Sum_probs=197.1
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCC--CceeccccCCCce
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHL 527 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~d--g~~l~~~s~d~~i 527 (755)
..|..|.+.|..|.|+..|..|+|||.|..|.+||+..+.....+ ..+|...++...|-|. ...+++...++.+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f----~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF----ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc----ccccccchhhhhccCCCCCcCceeccccCce
Confidence 447789999999999999999999999999999999988877766 5677777765555553 2333344444443
Q ss_pred eeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEe
Q 004404 528 EKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (755)
Q Consensus 528 ~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~ 604 (755)
.... +.... .+....+..|.+.|.-++.-|. ..|++++.|+.|.-+|++++.+...+
T Consensus 212 r~s~--------------------i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 212 RVSE--------------------ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred eeee--------------------eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 2111 11111 1223456679999999999997 77999999999999999987655444
Q ss_pred e----cCC---ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE------E-Eecc------CCCCEEEEEEccCCCEE
Q 004404 605 S----HSD---YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV------V-DWND------LHEMVTAACYTPDGQGA 664 (755)
Q Consensus 605 ~----h~~---~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~------v-~~~~------~~~~VtsvafSPdG~~L 664 (755)
. +.. ..+.|+.+|.+..+|++++.|..+++||.+.-.. + .+.. ..-.|++++|+.++.-|
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 2 333 6789999997777999999999999999865221 1 2222 22479999999988888
Q ss_pred EEEECCCcEEEEECCCCeeeeccccc----cccccccCCCC--CeEEEEE-ccCCCeEEEEEECCCcEEEEE--CCcceE
Q 004404 665 LVGSYKGSCHLYNTSENKLQQKSPIN----LQNKKKRSHQR--KITGFQF-APGSSSEVLVTSADSRIRVVD--GIDLVH 735 (755)
Q Consensus 665 asGs~DG~I~lwDl~~~~~~~~~~i~----~~~~~~~~h~~--~Vtsl~f-sPdg~~~L~sgs~Dg~IrVWD--~~~ll~ 735 (755)
+++-.|-.|+|+.-..+.-....+.. +..+.+++|.. .|.++-| -|... ++++|++-|.|.||+ ++++|+
T Consensus 352 LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 352 LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhHHHH
Confidence 88888999999954433221111111 11123678865 5777776 46655 899999999999999 688888
Q ss_pred EeecCCccEEEEEE
Q 004404 736 KFKGENYVQYMVCI 749 (755)
Q Consensus 736 ~~~GH~~~V~sv~f 749 (755)
-+.|-+..|+++--
T Consensus 431 ~MegDr~VVNCLEp 444 (559)
T KOG1334|consen 431 FMEGDRHVVNCLEP 444 (559)
T ss_pred HhhcccceEeccCC
Confidence 88888777776643
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.51 E-value=1.1e-11 Score=135.24 Aligned_cols=273 Identities=15% Similarity=0.185 Sum_probs=164.0
Q ss_pred EEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEE-CCCcEEEEeCcCCceeeeeecccccCc
Q 004404 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs-~DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
.++...++.|.+|++.+. ..+...+.+. +.+....|+++|++++|+.++ .++.|.+|++...............
T Consensus 5 y~~~~~~~~I~~~~~~~~--g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~-- 79 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE--GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP-- 79 (330)
T ss_pred EEEcCCCCCEEEEEECCC--CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC--
Confidence 344567899999998532 1222334443 345677899999999887765 4789999999632222111111111
Q ss_pred cccEEEeecCCCCceeccccC-CCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cE
Q 004404 503 LNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~-d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~ 580 (755)
.....+.++|++..++++.. ++.+....... +.. ..+.+..+.+ ......++++|+ ++
T Consensus 80 -~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~---------~g~---------~~~~~~~~~~-~~~~~~~~~~p~g~~ 139 (330)
T PRK11028 80 -GSPTHISTDHQGRFLFSASYNANCVSVSPLDK---------DGI---------PVAPIQIIEG-LEGCHSANIDPDNRT 139 (330)
T ss_pred -CCceEEEECCCCCEEEEEEcCCCeEEEEEECC---------CCC---------CCCceeeccC-CCcccEeEeCCCCCE
Confidence 12346788899887766543 33322111110 000 0012222222 234677889998 45
Q ss_pred EE-EEeCCCcEEEEECCCCcEEE-------EeecCCceEEEEEeeCCCcEEEEEEC-CCcEEEEECCC--CcE--EEecc
Q 004404 581 LL-SSSMDKTVRLWHLSSKTCLK-------IFSHSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPE--RQV--VDWND 647 (755)
Q Consensus 581 La-Sgs~DgtVrLWDl~t~~~~~-------~~~h~~~VtsVafsP~dg~~LaSgS~-DgtVrIWDl~t--~~~--v~~~~ 647 (755)
++ +...++.|.+||+.+...+. ..........++|+| ++++++++.. +++|.+|++.. ++. +....
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 54 55567999999998633221 112334567899999 9999888876 89999999973 332 22111
Q ss_pred -------CCCCEEEEEEccCCCEEEEEEC-CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 648 -------LHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 648 -------~~~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
.......+.|+|+|++|+++.. ++.|.+|++........+.-. ... ......+.|+|+|+ +|+++
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~-----~~~-~~~p~~~~~~~dg~-~l~va 291 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH-----QPT-ETQPRGFNIDHSGK-YLIAA 291 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE-----Eec-cccCCceEECCCCC-EEEEE
Confidence 1123446899999999999864 688999999654321111000 001 12445789999998 56655
Q ss_pred E-CCCcEEEEE
Q 004404 720 S-ADSRIRVVD 729 (755)
Q Consensus 720 s-~Dg~IrVWD 729 (755)
. .+++|.||+
T Consensus 292 ~~~~~~v~v~~ 302 (330)
T PRK11028 292 GQKSHHISVYE 302 (330)
T ss_pred EccCCcEEEEE
Confidence 4 589999997
No 189
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.50 E-value=1.3e-12 Score=134.43 Aligned_cols=207 Identities=17% Similarity=0.322 Sum_probs=161.4
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
-..+|+|.+|++|.+.+|.+-....|.||.....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--------------------------------------------- 43 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--------------------------------------------- 43 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCC---------------------------------------------
Confidence 45799999999999999999999999999763221
Q ss_pred cccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECC-CCc---EEEEeecCCc
Q 004404 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS-SKT---CLKIFSHSDY 609 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~-t~~---~~~~~~h~~~ 609 (755)
..++.+++..|...|+.|+|+|. +.|++|+.|..-+||... .++ .+..+.++..
T Consensus 44 ---------------------~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrA 102 (361)
T KOG1523|consen 44 ---------------------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRA 102 (361)
T ss_pred ---------------------CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccc
Confidence 12456788899999999999998 799999999999999984 333 2334459999
Q ss_pred eEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-----EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-----DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 610 VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-----~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
+++|.|+| .++.|++|+.-..|.||-++...-- ....+...|+++.|+|++-+|++|+.|+.+|+|..--....
T Consensus 103 At~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vd 181 (361)
T KOG1523|consen 103 ATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVD 181 (361)
T ss_pred eeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccc
Confidence 99999999 9999999999999999987654311 22345678999999999999999999999999975322111
Q ss_pred ecc---------ccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 685 QKS---------PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 685 ~~~---------~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
... ++-..........+.|.++.|+|+|. .|+-.+.|++|.+-|
T Consensus 182 ekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 182 EKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVD 234 (361)
T ss_pred cCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEee
Confidence 110 00000011224567899999999998 899999999999999
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.7e-12 Score=149.68 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=181.3
Q ss_pred eeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC--CCCEEEEEECCCcEEEEeCcCCc-
Q 004404 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESE- 489 (755)
Q Consensus 413 ~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp--dg~~LaTgs~DGtVrVWdl~t~~- 489 (755)
.+....+.+ .++++.++-+|++||...+..-..|.... .-...|+.|.+-. |..+|++|+.||.||||+--...
T Consensus 1069 ~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~--~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1069 TLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGA--FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred eeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCC--CCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 333434443 35677788899999998776544443221 2345788998855 55699999999999999753222
Q ss_pred eeeeeec------ccccCccccEEEeecCCC-CceeccccCCCceeeecccccccccccccCcccccceeeecCCCce-E
Q 004404 490 RKGELLE------KQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI-C 561 (755)
Q Consensus 490 ~~~~l~~------~~~~~~~~~v~~v~~s~d-g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i-~ 561 (755)
...++.. ....+..+.-..+.|... |.++++| .-..+ ++|+...+.+ .
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~I-----------------------RIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSI-----------------------RIWDAHKEQVVA 1201 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEE-----------------------EEEecccceeEe
Confidence 2222211 111111111133444443 2222222 22222 4565543322 2
Q ss_pred Eec-cCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCc---EEEEee-cCCc--eEEEEEeeCCCcEEEEEECCCcE
Q 004404 562 SFQ-GHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT---CLKIFS-HSDY--VTCIQFNPVDDRYFISGSLDAKV 632 (755)
Q Consensus 562 ~l~-gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~---~~~~~~-h~~~--VtsVafsP~dg~~LaSgS~DgtV 632 (755)
.+. +-..-|++|.-+-. +.+++|..||.|++||.+... .+.... |+.. |..+.+.+..-..|++|+.||.|
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 222 23344666654432 789999999999999988643 344444 8877 99999998333469999999999
Q ss_pred EEEECCCCcEE---EeccC---CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEE
Q 004404 633 RIWSIPERQVV---DWNDL---HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (755)
Q Consensus 633 rIWDl~t~~~v---~~~~~---~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (755)
++||++..... ....+ .+.++++..+++...+|+|+. +.|+||++...++...... ..-+....+.+.++
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n---~~F~~q~~gs~scL 1357 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYN---PGFMGQRIGSVSCL 1357 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccC---cccccCcCCCccee
Confidence 99999884222 22222 235999999999999999998 9999999987655432211 11111234567999
Q ss_pred EEccCCCeEEEEEECCCcEEEEE
Q 004404 707 QFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 707 ~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+|+|..- ++++|+.|.+|.||.
T Consensus 1358 ~FHP~~~-llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1358 AFHPHRL-LLAAGSADSTVSIYS 1379 (1387)
T ss_pred eecchhH-hhhhccCCceEEEee
Confidence 9999865 788999999999997
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.8e-13 Score=146.89 Aligned_cols=215 Identities=23% Similarity=0.311 Sum_probs=150.7
Q ss_pred eeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCC
Q 004404 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (755)
Q Consensus 446 ~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~ 525 (755)
+-..++|.||++.|+|+.|+.+|.+|++|+.|-.+.|||....+....
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs-------------------------------- 87 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS-------------------------------- 87 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--------------------------------
Confidence 444577899999999999999999999999999999999753322211
Q ss_pred ceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCC-----
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSS----- 597 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd---~~LaSgs~DgtVrLWDl~t----- 597 (755)
.-.||...|.++.|-|. ..+++|..|+.|+|+|+..
T Consensus 88 ------------------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~ 131 (758)
T KOG1310|consen 88 ------------------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGG 131 (758)
T ss_pred ------------------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccc
Confidence 12478999999999884 6789999999999999984
Q ss_pred -----CcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE--------Ee---ccCCCCEEEEEEccC
Q 004404 598 -----KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV--------DW---NDLHEMVTAACYTPD 660 (755)
Q Consensus 598 -----~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v--------~~---~~~~~~VtsvafSPd 660 (755)
......+. |...|..|+-.|...+.|.++++||+|+-+|++..... .. ...--...++.++|.
T Consensus 132 ~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~ 211 (758)
T KOG1310|consen 132 MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPS 211 (758)
T ss_pred cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCC
Confidence 12233334 99999999999944489999999999999999874321 11 111135678999995
Q ss_pred -CCEEEEEECCCcEEEEECCCCeeeecc----ccccc-----ccc-ccCCC-----------CCeEEEEEccCCCeEEEE
Q 004404 661 -GQGALVGSYKGSCHLYNTSENKLQQKS----PINLQ-----NKK-KRSHQ-----------RKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 661 -G~~LasGs~DG~I~lwDl~~~~~~~~~----~i~~~-----~~~-~~~h~-----------~~Vtsl~fsPdg~~~L~s 718 (755)
..+|++|+.|-..++||.+........ ..+.+ ... ..+|. ..++-+.|+|+|.. |++
T Consensus 212 rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtE-lLv 290 (758)
T KOG1310|consen 212 RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTE-LLV 290 (758)
T ss_pred CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcE-EEE
Confidence 478899999999999995321111000 00000 000 00111 12577889999984 554
Q ss_pred EECCCcEEEEE
Q 004404 719 TSADSRIRVVD 729 (755)
Q Consensus 719 gs~Dg~IrVWD 729 (755)
.=..-.|+++|
T Consensus 291 s~~gEhVYlfd 301 (758)
T KOG1310|consen 291 SWGGEHVYLFD 301 (758)
T ss_pred eeCCeEEEEEe
Confidence 44444789998
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=3.4e-12 Score=147.32 Aligned_cols=278 Identities=16% Similarity=0.186 Sum_probs=187.3
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
...+-..+.|+|-...++++...-.|+|||.+.++....+.........-.-..+-...|..++.+++.++.+.+|+...
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 33466778999999999999878899999999888776664222211111112233344567777888888887776544
Q ss_pred cccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceE
Q 004404 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVT 611 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~Vt 611 (755)
..... ...+ .-+..+++. +.+-.+.=.-+.|... ++|++++.-..|+|||.....+++.+. ....|+
T Consensus 1143 ~~~~~----~eLV--Taw~~Ls~~----~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1143 DKWKK----PELV--TAWSSLSDQ----LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred cccCC----ceeE--Eeecccccc----CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence 32100 0000 000011111 1111111134567665 899999989999999999988888775 566788
Q ss_pred EEEEeeCCCcEEEEEECCCcEEEEECCCCcE----EEeccCCCC--EEEEEEccCCCE-EEEEECCCcEEEEECCCCeee
Q 004404 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQV----VDWNDLHEM--VTAACYTPDGQG-ALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 612 sVafsP~dg~~LaSgS~DgtVrIWDl~t~~~----v~~~~~~~~--VtsvafSPdG~~-LasGs~DG~I~lwDl~~~~~~ 684 (755)
++.-+...++.|++|..||.|++||.+.... ..+..|... |..+.+.+.|-. |++|+.+|.|++||++.....
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e 1292 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE 1292 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc
Confidence 8887765689999999999999999876432 255566655 999999997754 999999999999999986333
Q ss_pred eccccccccccccCC---CCCeEEEEEccCCCeEEEEEECCCcEEEEE-CCcceEEeecCC------c-cEEEEEEEE
Q 004404 685 QKSPINLQNKKKRSH---QRKITGFQFAPGSSSEVLVTSADSRIRVVD-GIDLVHKFKGEN------Y-VQYMVCIVL 751 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h---~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD-~~~ll~~~~GH~------~-~V~sv~fs~ 751 (755)
....+. .| .+.++++..+++.+ .+++|+. +.|+||+ .++.+..++-+. . .+.++.|-|
T Consensus 1293 ~~~~iv-------~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1293 TFLTIV-------AHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred ccceee-------eccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecc
Confidence 322221 22 23599999999987 7888888 9999999 577666655332 1 255666554
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.46 E-value=1.3e-12 Score=141.36 Aligned_cols=207 Identities=17% Similarity=0.304 Sum_probs=153.6
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
.+.++..+.||++.+.++..+- ...+.+|.++|.+-.|+|||.-|+|+|+||.|++|.-. +-
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rV------E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GM----------- 136 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARV------ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GM----------- 136 (737)
T ss_pred cceEEEEcCCceEEEecccchh------hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-ch-----------
Confidence 3556677889999888765221 13467999999999999999999999999999999741 11
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-c
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~ 579 (755)
...++.....+|.|++|.|+ +
T Consensus 137 ----------------------------------------------------------LRStl~Q~~~~v~c~~W~p~S~ 158 (737)
T KOG1524|consen 137 ----------------------------------------------------------LRSTVVQNEESIRCARWAPNSN 158 (737)
T ss_pred ----------------------------------------------------------HHHHHhhcCceeEEEEECCCCC
Confidence 00112224457999999998 3
Q ss_pred EEEEEeCCCcEEEEECCCCc-EEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEc
Q 004404 580 HLLSSSMDKTVRLWHLSSKT-CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYT 658 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~-~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafS 658 (755)
.++.+- .+.+.|=-+.... .++--.|.+-|.++.|+| ..+++++|++|-+.+|||-....+.....|..+|++++|.
T Consensus 159 ~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~n 236 (737)
T KOG1524|consen 159 SIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFN 236 (737)
T ss_pred ceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeec
Confidence 333332 3455555555443 333334999999999999 8899999999999999998776666667788899999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEE
Q 004404 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 659 PdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVW 728 (755)
|+ +.+++++.+ ++|+ . +...+.|..++|++||. .++.|+..|.+.+-
T Consensus 237 pd-~~~~v~S~n-t~R~--------~------------~p~~GSifnlsWS~DGT-Q~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 237 PE-KDYLLWSYN-TARF--------S------------SPRVGSIFNLSWSADGT-QATCGTSTGQLIVA 283 (737)
T ss_pred cc-cceeeeeee-eeee--------c------------CCCccceEEEEEcCCCc-eeeccccCceEEEe
Confidence 99 677777642 3331 0 24568899999999997 89999888887653
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.46 E-value=2.5e-12 Score=130.67 Aligned_cols=198 Identities=14% Similarity=0.207 Sum_probs=152.1
Q ss_pred cccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecc
Q 004404 454 AHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (755)
Q Consensus 454 gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~ 532 (755)
.|..++++..|+. +-++|.|.|-|-+..|||++++..
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------------------------------------ 185 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------------------------------------ 185 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccc------------------------------------------
Confidence 4678999999987 778999999999999999976510
Q ss_pred cccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEe-e---c
Q 004404 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF-S---H 606 (755)
Q Consensus 533 ~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~-~---h 606 (755)
+.....+-+|..+|.+++|... +.|++.+.||.||+||++..+.-..+ + .
T Consensus 186 ------------------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 186 ------------------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred ------------------------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 0112245679999999999985 78999999999999999987655444 2 3
Q ss_pred CCceEEEEEeeCCCcEEEEEECC-CcEEEEECCCCc--EEEeccCCCCEEEEEEccC-CCEEEEEECCCcEEEEECCCCe
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLD-AKVRIWSIPERQ--VVDWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENK 682 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~D-gtVrIWDl~t~~--~v~~~~~~~~VtsvafSPd-G~~LasGs~DG~I~lwDl~~~~ 682 (755)
..+...++|++.|.+++++-..| ..|.|.|++... +..+..|...|+.++|.|. ...|.+++.|..+-+||+...-
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 56889999999888999986655 569999998743 4477889999999999995 4789999999999999998643
Q ss_pred eeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
..... -+...+ ...+.|+.++|++..+..++.+..
T Consensus 322 ~~~~~---dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 322 RENGE---DPILAY-TAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccCCC---Cchhhh-hccceeeeeeecccCCCEEEEEec
Confidence 31110 000111 356789999999876656776654
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=2.1e-11 Score=127.82 Aligned_cols=233 Identities=15% Similarity=0.213 Sum_probs=156.3
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccccc
Q 004404 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~ 535 (755)
...|..+.|+.+...|..|+.|| -++++....+.... .......+...-|+..-..++.......+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-----~~~~~~~IvEmLFSSSLvaiV~~~qpr~L-------- 70 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-----KDTEGVSIVEMLFSSSLVAIVSIKQPRKL-------- 70 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-----ccCCCeEEEEeecccceeEEEecCCCceE--------
Confidence 34677788999999999999998 57777654433111 11111222233333322222222111111
Q ss_pred ccccccccCcccccceeeecC-CCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee----cCCce
Q 004404 536 INRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYV 610 (755)
Q Consensus 536 ~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~----h~~~V 610 (755)
++.... ...++.+. ...+|.++.++.+ +|+++-.+. |+|||+++.+.++++. +...+
T Consensus 71 ---------------kv~~~Kk~~~ICe~~-fpt~IL~VrmNr~-RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 71 ---------------KVVHFKKKTTICEIF-FPTSILAVRMNRK-RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred ---------------EEEEcccCceEEEEe-cCCceEEEEEccc-eEEEEEccc-EEEEecccceeehhhhccCCCccce
Confidence 111111 11222222 3356888888754 455555544 9999999999999986 44456
Q ss_pred EEEEEeeCCCcEEEEE--ECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCc-EEEEECCCCeeeec
Q 004404 611 TCIQFNPVDDRYFISG--SLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGS-CHLYNTSENKLQQK 686 (755)
Q Consensus 611 tsVafsP~dg~~LaSg--S~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~-I~lwDl~~~~~~~~ 686 (755)
.++.+++ .+.+++-= ...|.|.|||+.+-+.+ .+..|.+.+.+++|+|+|.+||+++..|+ ||+|.+.+|+.+..
T Consensus 133 ~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 133 CALSPNN-ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred EeeccCC-CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 6666665 55577642 34688999999998877 44567889999999999999999999998 69999999999886
Q ss_pred cccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+. ...-...|.+++|+|+++ +|++.|..++|+||.
T Consensus 212 FR-------RG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 212 FR-------RGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFK 246 (391)
T ss_pred ee-------CCceeeEEEEEEECCCCC-eEEEecCCCeEEEEE
Confidence 53 112246799999999998 899999999999997
No 196
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.1e-11 Score=140.35 Aligned_cols=232 Identities=16% Similarity=0.106 Sum_probs=154.2
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECC---CcEEEEeCcCCceeeeeecccccCccccEE
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~D---GtVrVWdl~t~~~~~~l~~~~~~~~~~~v~ 507 (755)
..|++||...... +.+..|...+.+.+|+|||++|+..+.+ ..|.+|++.+++... +
T Consensus 184 ~~l~i~D~~g~~~------~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l------------- 243 (433)
T PRK04922 184 YALQVADSDGYNP------QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V------------- 243 (433)
T ss_pred EEEEEECCCCCCc------eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-------------
Confidence 4578888753332 2345677889999999999999988743 468888886543211 0
Q ss_pred EeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCc-EE-EEEe
Q 004404 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HL-LSSS 585 (755)
Q Consensus 508 ~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~-~L-aSgs 585 (755)
..+.+....+.|+|++ .| ++.+
T Consensus 244 --------------------------------------------------------~~~~g~~~~~~~SpDG~~l~~~~s 267 (433)
T PRK04922 244 --------------------------------------------------------ASFRGINGAPSFSPDGRRLALTLS 267 (433)
T ss_pred --------------------------------------------------------ccCCCCccCceECCCCCEEEEEEe
Confidence 0111123356788884 44 3445
Q ss_pred CCC--cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEEC-CCc--EEEEECCCCcEEEeccCCCCEEEEEEccC
Q 004404 586 MDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DAK--VRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (755)
Q Consensus 586 ~Dg--tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~-Dgt--VrIWDl~t~~~v~~~~~~~~VtsvafSPd 660 (755)
.++ .|++||+.+++......+......++|+| |+++|+..+. +|. |.++++.+++...+.........++|+|+
T Consensus 268 ~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD 346 (433)
T PRK04922 268 RDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPD 346 (433)
T ss_pred CCCCceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 555 59999999887655445655667889999 8998887764 444 66778777776554433445567899999
Q ss_pred CCEEEEEECCC---cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC---CCcEEEEE-CCcc
Q 004404 661 GQGALVGSYKG---SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA---DSRIRVVD-GIDL 733 (755)
Q Consensus 661 G~~LasGs~DG---~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~---Dg~IrVWD-~~~l 733 (755)
|++|+..+.++ .|++||+.+++.... .+........|+|+|. +|+..+. .+.|.+++ .+..
T Consensus 347 G~~Ia~~~~~~~~~~I~v~d~~~g~~~~L-----------t~~~~~~~p~~spdG~-~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 347 GKKIAMVHGSGGQYRIAVMDLSTGSVRTL-----------TPGSLDESPSFAPNGS-MVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CCEEEEEECCCCceeEEEEECCCCCeEEC-----------CCCCCCCCceECCCCC-EEEEEEecCCceEEEEEECCCCc
Confidence 99998865443 599999988765432 1222344678999998 4555443 34577778 3566
Q ss_pred eEEeecCCccEEEEEEEE
Q 004404 734 VHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 734 l~~~~GH~~~V~sv~fs~ 751 (755)
..++..+...+...+++|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 777776666666666655
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=4.1e-11 Score=137.28 Aligned_cols=292 Identities=16% Similarity=0.196 Sum_probs=196.8
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecc
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~ 497 (755)
.....++++|..+|+|.+|.--..+. ..+.++.|.-|.+.|+++.|+++|.+|+|||..|.+.+|.+.+++ ++++
T Consensus 214 spn~~~~Aa~d~dGrI~vw~d~~~~~-~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL-- 288 (792)
T KOG1963|consen 214 SPNERYLAAGDSDGRILVWRDFGSSD-DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL-- 288 (792)
T ss_pred ccccceEEEeccCCcEEEEecccccc-ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccc--
Confidence 33456789999999999997654222 233356788999999999999999999999999999999999987 3442
Q ss_pred cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC
Q 004404 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp 577 (755)
+.-..++..+.++||+.+.+....|..+.............++.-....+ ..-....+-.+.++++|
T Consensus 289 --PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~-----------~~k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 289 --PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP-----------STKTRPQSLTTGVSIDP 355 (792)
T ss_pred --cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc-----------cccccccccceeEEEcC
Confidence 44467888899999998888777777664433322111111111000000 00112344567788899
Q ss_pred C-cEEEEEeCCCcEEEEECCCCcEEEEee------cC------CceEEEEEeeCCCcEEEEEE--------CCC--cEEE
Q 004404 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS------HS------DYVTCIQFNPVDDRYFISGS--------LDA--KVRI 634 (755)
Q Consensus 578 d-~~LaSgs~DgtVrLWDl~t~~~~~~~~------h~------~~VtsVafsP~dg~~LaSgS--------~Dg--tVrI 634 (755)
. +.++-.+..+.|++||+.+...+..+. +. ..++.++.+- .+.++++.- .|| .+++
T Consensus 356 r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 356 RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEE
Confidence 5 889999999999999998876665542 22 3577888887 688998863 233 4778
Q ss_pred EECCCCc----EEE--eccCCCCEEEEEEcc--CCCEEEEEECCCcEEEEECCCCeeeecccccc-ccccccCCCCCeEE
Q 004404 635 WSIPERQ----VVD--WNDLHEMVTAACYTP--DGQGALVGSYKGSCHLYNTSENKLQQKSPINL-QNKKKRSHQRKITG 705 (755)
Q Consensus 635 WDl~t~~----~v~--~~~~~~~VtsvafSP--dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~-~~~~~~~h~~~Vts 705 (755)
|-..... +.. ...|...+.+.++.+ ....+++++.||.++||-+...+.+......- ....-..|..+++.
T Consensus 435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a 514 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITA 514 (792)
T ss_pred EEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccc
Confidence 8654432 221 234555555555544 23389999999999999996544332211000 00001147889999
Q ss_pred EEEccCCCeEEEEEECCCcEEEEEC
Q 004404 706 FQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 706 l~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
++|+.||. +++.+.|++|.+||.
T Consensus 515 ~~fs~dGs--lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 515 LCFSQDGS--LLAVSFDDTITIWDY 537 (792)
T ss_pred hhhcCCCc--EEEEecCCEEEEecC
Confidence 99999995 888999999999994
No 198
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3.3e-11 Score=136.67 Aligned_cols=234 Identities=9% Similarity=0.036 Sum_probs=154.2
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC---CCcEEEEeCcCCceeeeeecccccCccccE
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---DCVIHVWQVVESERKGELLEKQEDGHLNML 506 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~---DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v 506 (755)
...|+++|...... +.+..|...|.+.+|+|||+.|+..+. +..|.+|++.+++.. .
T Consensus 181 ~~~l~~~d~dg~~~------~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~------------- 240 (435)
T PRK05137 181 IKRLAIMDQDGANV------RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-L------------- 240 (435)
T ss_pred ceEEEEECCCCCCc------EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-E-------------
Confidence 44677777653332 335578889999999999999888764 467999998655321 0
Q ss_pred EEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCc-EE-EEE
Q 004404 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HL-LSS 584 (755)
Q Consensus 507 ~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~-~L-aSg 584 (755)
+..+.+.+...+|+|++ .| ++.
T Consensus 241 --------------------------------------------------------l~~~~g~~~~~~~SPDG~~la~~~ 264 (435)
T PRK05137 241 --------------------------------------------------------VGNFPGMTFAPRFSPDGRKVVMSL 264 (435)
T ss_pred --------------------------------------------------------eecCCCcccCcEECCCCCEEEEEE
Confidence 11122345567889984 44 455
Q ss_pred eCCCc--EEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEEC-CC--cEEEEECCCCcEEEeccCCCCEEEEEEcc
Q 004404 585 SMDKT--VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (755)
Q Consensus 585 s~Dgt--VrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~-Dg--tVrIWDl~t~~~v~~~~~~~~VtsvafSP 659 (755)
+.++. |++||+.++...+...+........|+| |++.|+..+. +| .|.+||+.++....+......+....|+|
T Consensus 265 ~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp 343 (435)
T PRK05137 265 SQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP 343 (435)
T ss_pred ecCCCceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECC
Confidence 55555 7788998887655545666677899999 9998887764 33 68888988877766655556677789999
Q ss_pred CCCEEEEEECC---CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC-----CcEEEEEC-
Q 004404 660 DGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-----SRIRVVDG- 730 (755)
Q Consensus 660 dG~~LasGs~D---G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D-----g~IrVWD~- 730 (755)
+|++|+....+ ..|.+||+.++..... .....+..+.|+|+|+.+++++... ..|.++|.
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~~~~l-----------t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSGERIL-----------TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEec-----------cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 99999886653 3588889866543221 1122466789999998433434322 25777773
Q ss_pred CcceEEeecCCccEEEEEEEEE
Q 004404 731 IDLVHKFKGENYVQYMVCIVLF 752 (755)
Q Consensus 731 ~~ll~~~~GH~~~V~sv~fs~F 752 (755)
+.....+.. ...+...+++||
T Consensus 413 g~~~~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVPT-PGDASDPAWSPL 433 (435)
T ss_pred CCceEEccC-CCCccCcccCCC
Confidence 333444442 333555566554
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.7e-11 Score=140.35 Aligned_cols=273 Identities=15% Similarity=0.199 Sum_probs=182.2
Q ss_pred eCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCC---CEEEEEECCCcEEEEeCcCCceeeeeecccccCcc
Q 004404 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG---RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (755)
Q Consensus 427 g~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg---~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~ 503 (755)
......|.+|...+++... .+.+|..+++.+.+.|.. .++++++.||.|++||...++.+..+... .+.
T Consensus 33 ~~~~~~V~VyS~~Tg~~i~-----~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~---~~v 104 (792)
T KOG1963|consen 33 LCTGNFVKVYSTATGECIT-----SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN---LPV 104 (792)
T ss_pred EeeCCEEEEEecchHhhhh-----hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC---Cce
Confidence 3456788899888777554 577999999999998844 47889999999999999988877665311 111
Q ss_pred ccEEE-eecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEE
Q 004404 504 NMLLL-ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLL 582 (755)
Q Consensus 504 ~~v~~-v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~La 582 (755)
..... .++......+.....+..+... .............+-.........+..|.. -..|.+++.+.+.
T Consensus 105 ~~~~~~~~~a~~s~~~~~s~~~~~~~~~--------~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 105 HALVYKPAQADISANVYVSVEDYSILTT--------FSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFK 175 (792)
T ss_pred eEEEechhHhCccceeEeecccceeeee--------cccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEE
Confidence 11111 1111111111111111111000 000000000000111111222222334433 4567788888777
Q ss_pred EEeCCCcEEEEECCCCcEEEEe------ecCCceEEEEEeeCCCcEEEEEECCCcEEEEEC-C----CCcEEEeccCCCC
Q 004404 583 SSSMDKTVRLWHLSSKTCLKIF------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI-P----ERQVVDWNDLHEM 651 (755)
Q Consensus 583 Sgs~DgtVrLWDl~t~~~~~~~------~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl-~----t~~~v~~~~~~~~ 651 (755)
..-.+..+.+|....+. ..+. .|.-.+++++++| ++++++++..||+|.+|.- . +..+..+.-|+..
T Consensus 176 ~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 77788889999988755 2222 2777799999999 9999999999999999953 2 2234456678899
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 652 VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
|++++|+++|.+|++|+..|.+-+|.+.+++.... .--..+|..+.++||+. ..++...|..|.+..
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfL----------PRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFL----------PRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIK 320 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCCcccc----------cccCCeeEEEEEcCCCC-eEEEEecCceEEEEe
Confidence 99999999999999999999999999999884332 13467899999999998 677788899999987
No 200
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.40 E-value=7.5e-13 Score=141.58 Aligned_cols=249 Identities=9% Similarity=0.103 Sum_probs=191.0
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccc
Q 004404 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (755)
Q Consensus 459 I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~ 538 (755)
-..+.++.+|++|+.|+.-|.|-.+|+.+.....++.. ...+..+.|-.+..+++.+.....
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v------~Etv~Dv~~LHneq~~AVAQK~y~------------ 193 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV------METVRDVTFLHNEQFFAVAQKKYV------------ 193 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh------hhhhhhhhhhcchHHHHhhhhceE------------
Confidence 45689999999999999999999999999988777632 223444555555555555532221
Q ss_pred cccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEe
Q 004404 539 KSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFN 616 (755)
Q Consensus 539 ~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafs 616 (755)
.+++-.+..++-++.|. .|..|.|.|- -+|++++..|.++--|+.+|+.+..+. ..+.+..++-+
T Consensus 194 ------------yvYD~~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 194 ------------YVYDNNGTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred ------------EEecCCCcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 35555666677676664 5889999998 557788889999999999999998886 77889999999
Q ss_pred eCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccccccccc
Q 004404 617 PVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695 (755)
Q Consensus 617 P~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~ 695 (755)
| -+..+-.|...|+|.+|.....+++ .+..|.++|.++++.++|+|+|+.+.|..|+|||++....+.++.
T Consensus 261 P-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~------- 332 (545)
T KOG1272|consen 261 P-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR------- 332 (545)
T ss_pred C-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee-------
Confidence 9 7888999999999999999887765 788899999999999999999999999999999999887655432
Q ss_pred ccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE-----CCcceEEeecCCc--cEEEEEEEEE
Q 004404 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-----GIDLVHKFKGENY--VQYMVCIVLF 752 (755)
Q Consensus 696 ~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD-----~~~ll~~~~GH~~--~V~sv~fs~F 752 (755)
. ..+...++|+..| +++.+....|.||. .+..-..|-.|.- .|..+.|.||
T Consensus 333 --t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 333 --T-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY 390 (545)
T ss_pred --c-CCCcccccccccc---ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence 1 2446677888765 56666667899997 1233344444433 3777777765
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.4e-11 Score=134.71 Aligned_cols=262 Identities=18% Similarity=0.171 Sum_probs=172.3
Q ss_pred eeEeecccCCEEEEEEcCCCCE-EEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCce
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRY-LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~-LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i 527 (755)
+|.| .|...-+.|..+|||+| ||||..--.|++||+.......+- .-....+.....+.|-..++.-..+..|
T Consensus 45 iQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-----hlDae~V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 45 IQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-----HLDAEVVDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred HHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-----cccccceeEEEeccchhhheEeecCcee
Confidence 3444 48888999999999997 566777889999999765443332 1112223233333332222222222222
Q ss_pred eeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-
Q 004404 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (755)
Q Consensus 528 ~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp-d~~LaSgs~DgtVrLWDl~t~~~~~~~~- 605 (755)
.+..... . ...+. -...-.+|+++. +.-|+.++....|+-+++..|+.+..|.
T Consensus 119 efHak~G-----------------------~-hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 119 EFHAKYG-----------------------R-HYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred eehhhcC-----------------------e-eeeee-cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence 2111110 0 00000 001124555553 3556666777789999999999999998
Q ss_pred cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC------------CCEEEEEEccCCCEEEEEECCCcE
Q 004404 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------------EMVTAACYTPDGQGALVGSYKGSC 673 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~------------~~VtsvafSPdG~~LasGs~DG~I 673 (755)
..+.+++|..++ -..+|++|+.+|.|..||.++...+...... ..|+++.|+-+|-.+++|+.+|.+
T Consensus 174 ~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v 252 (703)
T KOG2321|consen 174 DSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV 252 (703)
T ss_pred ccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE
Confidence 558999999999 7889999999999999999987755433222 249999999999999999999999
Q ss_pred EEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 674 ~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
.|||++..+++... -.+..-+|..+.|.+.+..--++..+...++||| +++....+..- ..++.+|+.|
T Consensus 253 ~iyDLRa~~pl~~k--------dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p 323 (703)
T KOG2321|consen 253 LIYDLRASKPLLVK--------DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVP 323 (703)
T ss_pred EEEEcccCCceeec--------ccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc-CCcCceeeec
Confidence 99999998876532 2244568999999877443345555667889999 56655554432 2366666643
No 202
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.38 E-value=1e-11 Score=135.09 Aligned_cols=193 Identities=16% Similarity=0.254 Sum_probs=135.9
Q ss_pred EEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCCceeeeeecccccCc
Q 004404 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
++.|-..|.|.+.+....+...++-.. ..--+..|+||+|-|.+ ..++.+-.+|.+.++|..-.. +.
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~-r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-----------~~ 255 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEE-RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-----------GA 255 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhc-ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-----------cC
Confidence 466778888888887766555544321 12235789999999944 456666789999999862111 00
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEE
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL 581 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~L 581 (755)
..+... .-+++..+..... ....+..|+..+.--++.|+.++|+|+ .+|
T Consensus 256 t~p~~~--~~k~~~~f~i~t~----------------------------ksk~~rNPv~~w~~~~g~in~f~FS~DG~~L 305 (636)
T KOG2394|consen 256 TAPSYQ--ALKDGDQFAILTS----------------------------KSKKTRNPVARWHIGEGSINEFAFSPDGKYL 305 (636)
T ss_pred CCCccc--ccCCCCeeEEeee----------------------------eccccCCccceeEeccccccceeEcCCCceE
Confidence 000000 0111111111100 000122455555555668999999999 789
Q ss_pred EEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe-ccCCCCEEEEEEcc
Q 004404 582 LSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTP 659 (755)
Q Consensus 582 aSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~-~~~~~~VtsvafSP 659 (755)
|+.+.||.+||||..+.+++..++ --+...|++|+| |++||++|++|..|.||.+..++++.. ..|+.+|..|+|.|
T Consensus 306 A~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 306 ATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999988887775 667899999999 999999999999999999999999854 67889999999998
No 203
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=4e-11 Score=125.14 Aligned_cols=233 Identities=17% Similarity=0.248 Sum_probs=155.8
Q ss_pred EEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCCceeeeeecccccCc
Q 004404 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
++.+..|..|++|++.......+. ..-+..|+|++|-|.+ +-|+.|.. +-|.||.....-.....
T Consensus 113 fava~nddvVriy~ksst~pt~Lk-----s~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~-------- 178 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCPTKLK-----SVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRN-------- 178 (445)
T ss_pred hhhhccCcEEEEeccCCCCCceec-----chhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccc--------
Confidence 567889999999999874433222 1345689999999965 45666655 56999986322111000
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEE
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL 581 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~L 581 (755)
. .........+....|| ..|+.|.|.++ ..+
T Consensus 179 ----~-------------------------------------------~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l 210 (445)
T KOG2139|consen 179 ----I-------------------------------------------RMMSTHHLQVLQDPGH-NPVTSMQWNEDGTIL 210 (445)
T ss_pred ----c-------------------------------------------ccccccchhheeCCCC-ceeeEEEEcCCCCEE
Confidence 0 0000001123345567 67999999999 567
Q ss_pred EEEeC-CCcEEEEECCCCcEEEEe-ecCCceEEEEEeeCCCcEEEEEECCCcEEEEE-CCCCcEEEeccCCCCEEEEEEc
Q 004404 582 LSSSM-DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWS-IPERQVVDWNDLHEMVTAACYT 658 (755)
Q Consensus 582 aSgs~-DgtVrLWDl~t~~~~~~~-~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWD-l~t~~~v~~~~~~~~VtsvafS 658 (755)
++++. |..|.|||..++.++... ...+.++-+.|+| |+++|+++.-|+..++|+ .++.....+....+.|...+|+
T Consensus 211 ~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs 289 (445)
T KOG2139|consen 211 VTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS 289 (445)
T ss_pred eecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeec
Confidence 77665 678999999999887766 3677889999999 999999999999999994 4555666777788899999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeee-----------eccccccccccccC----CCCCeEEEEEccCCCeEEEEEEC
Q 004404 659 PDGQGALVGSYKGSCHLYNTSENKLQ-----------QKSPINLQNKKKRS----HQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 659 PdG~~LasGs~DG~I~lwDl~~~~~~-----------~~~~i~~~~~~~~~----h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
|+|.+|+.... |.-++|.+.....- ..+..+++...... -.+.+.+++|.|.|. +|++.-.
T Consensus 290 pcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~fK 365 (445)
T KOG2139|consen 290 PCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIFK 365 (445)
T ss_pred CCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEEc
Confidence 99988877653 34445554321110 00111111111111 246788999999998 7777643
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.38 E-value=7.4e-12 Score=125.83 Aligned_cols=165 Identities=18% Similarity=0.261 Sum_probs=126.5
Q ss_pred cccCCEEEEEEcC-CCC--EEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeee
Q 004404 454 AHNGSIWSIKFSL-DGR--YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 454 gH~~~I~sI~fSp-dg~--~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
+..+.++|..+.. ++. +|+.|-++|.|.+||+.++..+..+..
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~---------------------------------- 193 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ---------------------------------- 193 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc----------------------------------
Confidence 4567788887644 343 566677889999999977654433310
Q ss_pred cccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCC--cEEE--Eee
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLK--IFS 605 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~--~~~~--~~~ 605 (755)
..+.+..+..|..+|+++.+.+. ..=++|+.+..+..|.+... .+.. ...
T Consensus 194 -------------------------~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 194 -------------------------SSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred -------------------------ccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 11233445679999999999876 66788999999999988643 3221 222
Q ss_pred -cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe-ccCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 004404 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (755)
Q Consensus 606 -h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~-~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl 678 (755)
.+-.|..+.+-| |++.|++++.|+.||||+.++.+++.. ..|...|++++|+|+...+|+++.|++|.+|++
T Consensus 249 lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 249 LKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 344688889999 999999999999999999999998854 456689999999999999999999999999986
No 205
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.4e-10 Score=131.34 Aligned_cols=235 Identities=16% Similarity=0.140 Sum_probs=150.0
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECC---CcEEEEeCcCCceeeeeecccccCccccE
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNML 506 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~D---GtVrVWdl~t~~~~~~l~~~~~~~~~~~v 506 (755)
...|+++|...... +.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +
T Consensus 175 ~~~L~~~D~dG~~~------~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l------------ 235 (427)
T PRK02889 175 RYQLQISDADGQNA------QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V------------ 235 (427)
T ss_pred ccEEEEECCCCCCc------eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e------------
Confidence 34677776643221 2244678899999999999999887643 358899986654211 0
Q ss_pred EEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEE-EE
Q 004404 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SS 584 (755)
Q Consensus 507 ~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~La-Sg 584 (755)
....+.+....|+|+ ..|+ +.
T Consensus 236 ---------------------------------------------------------~~~~g~~~~~~~SPDG~~la~~~ 258 (427)
T PRK02889 236 ---------------------------------------------------------ANFKGSNSAPAWSPDGRTLAVAL 258 (427)
T ss_pred ---------------------------------------------------------ecCCCCccceEECCCCCEEEEEE
Confidence 011122446789998 3454 56
Q ss_pred eCCCcEEEEE--CCCCcEEEEeecCCceEEEEEeeCCCcEEEEEEC-CCcEEEEE--CCCCcEEEeccCCCCEEEEEEcc
Q 004404 585 SMDKTVRLWH--LSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DAKVRIWS--IPERQVVDWNDLHEMVTAACYTP 659 (755)
Q Consensus 585 s~DgtVrLWD--l~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~-DgtVrIWD--l~t~~~v~~~~~~~~VtsvafSP 659 (755)
+.++...||. +..+...+...+...+....|+| |+++|+..+. ++...||. +.++...............+|+|
T Consensus 259 ~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp 337 (427)
T PRK02889 259 SRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP 337 (427)
T ss_pred ccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC
Confidence 6777766665 44444333333555667789999 9998876664 45666665 45555444333333455689999
Q ss_pred CCCEEEEEECCC---cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC-CCc--EEEEE-CCc
Q 004404 660 DGQGALVGSYKG---SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA-DSR--IRVVD-GID 732 (755)
Q Consensus 660 dG~~LasGs~DG---~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~-Dg~--IrVWD-~~~ 732 (755)
||++|+..+.++ .|++||+.+++..... .........|+|+|+ +|+.++. .+. +.+.+ .+.
T Consensus 338 DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-----------~~~~~~~p~~spdg~-~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 338 DGKLLAYISRVGGAFKLYVQDLATGQVTALT-----------DTTRDESPSFAPNGR-YILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred CCCEEEEEEccCCcEEEEEEECCCCCeEEcc-----------CCCCccCceECCCCC-EEEEEEecCCCEEEEEEECCCC
Confidence 999999877654 5999999887654321 112235679999998 4555543 433 44555 466
Q ss_pred ceEEeecCCccEEEEEEEEEE
Q 004404 733 LVHKFKGENYVQYMVCIVLFF 753 (755)
Q Consensus 733 ll~~~~GH~~~V~sv~fs~F~ 753 (755)
....+..+...+...+++||+
T Consensus 406 ~~~~l~~~~g~~~~p~wsp~~ 426 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGPFM 426 (427)
T ss_pred ceEEeecCCCCCCCCccCCCC
Confidence 677777777777777877764
No 206
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=3.5e-12 Score=137.23 Aligned_cols=292 Identities=12% Similarity=0.151 Sum_probs=205.5
Q ss_pred HHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccC
Q 004404 332 FEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK 408 (755)
Q Consensus 332 ~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~ 408 (755)
...|.+|.+-|+.|.|-+. +++||+|..|. +||-.++..+.....||.++|..-.|.+- .
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv-~WdW~~~~~~l~f~SGH~~NvfQaKFiP~----------------s 197 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVV-VWDWVSGSPKLSFESGHCNNVFQAKFIPF----------------S 197 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEE-eehhhccCcccccccccccchhhhhccCC----------------C
Confidence 4667899999999999776 99999999999 99999998888888999999866555542 1
Q ss_pred CCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCC-EEEEEECCCcEEEEeCcC
Q 004404 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVE 487 (755)
Q Consensus 409 g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~-~LaTgs~DGtVrVWdl~t 487 (755)
+-..+ +..+.|+.|++-.+.... ......-+..|.++|.-++.-|+.. -|.|++.|+.|.-.|+..
T Consensus 198 ~d~ti-----------~~~s~dgqvr~s~i~~t~--~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~ 264 (559)
T KOG1334|consen 198 GDRTI-----------VTSSRDGQVRVSEILETG--YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ 264 (559)
T ss_pred CCcCc-----------eeccccCceeeeeecccc--ceecceecccccCccceeeecCCCCCcccccccccceeeeeecc
Confidence 11223 333556666554332111 1111223457999999999999654 699999999999999765
Q ss_pred CceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCC
Q 004404 488 SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567 (755)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~ 567 (755)
......+. + -..+.
T Consensus 265 ~~pa~~~~------------------------c------------------------------------------r~~~~ 278 (559)
T KOG1334|consen 265 DVPAEKFV------------------------C------------------------------------------READE 278 (559)
T ss_pred CCccceee------------------------e------------------------------------------eccCC
Confidence 44322210 0 00011
Q ss_pred ---CCEEEEEecCC--cEEEEEeCCCcEEEEECCCCc------EEEEee-------cCCceEEEEEeeCCCcEEEEEECC
Q 004404 568 ---DDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT------CLKIFS-------HSDYVTCIQFNPVDDRYFISGSLD 629 (755)
Q Consensus 568 ---~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~------~~~~~~-------h~~~VtsVafsP~dg~~LaSgS~D 629 (755)
-....++..|. +.+++++.|..+++||.+.-. .+..|. ..-.|+|++|+. ++.-|++.-.|
T Consensus 279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnD 357 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYND 357 (559)
T ss_pred ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC-Cccceeeeecc
Confidence 13566777775 689999999999999986421 223331 334699999997 66667777778
Q ss_pred CcEEEEECCC--C----------cEE-E-eccCCC--CEEEEE-EccCCCEEEEEECCCcEEEEECCCCeeeeccccccc
Q 004404 630 AKVRIWSIPE--R----------QVV-D-WNDLHE--MVTAAC-YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ 692 (755)
Q Consensus 630 gtVrIWDl~t--~----------~~v-~-~~~~~~--~Vtsva-fSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~ 692 (755)
-.|+++.-.- + +.+ . ..+|.. .|..+- |-|...|+++|+.-|.|.||+-.+++++....
T Consensus 358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me---- 433 (559)
T KOG1334|consen 358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME---- 433 (559)
T ss_pred cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh----
Confidence 8999995322 2 122 2 233332 455554 57888999999999999999999998876532
Q ss_pred cccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 693 NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 693 ~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+-...|++|.-+|.-+ .|++.+-|.-|+||-.
T Consensus 434 -----gDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 434 -----GDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTP 465 (559)
T ss_pred -----cccceEeccCCCCCCc-hhhccCCccceeeecC
Confidence 4445899999999887 8999999999999983
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.36 E-value=4.1e-11 Score=123.48 Aligned_cols=222 Identities=14% Similarity=0.191 Sum_probs=164.8
Q ss_pred EEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCcc
Q 004404 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~ 503 (755)
++.+.....|.||.....++ ....++++.|...|++|.|+|..+.|+||+.|..-.||....+.
T Consensus 25 iAv~~~~~evhiy~~~~~~~--w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~-------------- 88 (361)
T KOG1523|consen 25 IAVSPNNHEVHIYSMLGADL--WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG-------------- 88 (361)
T ss_pred EEeccCCceEEEEEecCCCC--ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC--------------
Confidence 56677888889998776552 33456788999999999999999999999999999999763211
Q ss_pred ccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEE
Q 004404 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL 582 (755)
Q Consensus 504 ~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~La 582 (755)
..++...+.-|...++++.|+|. ++|+
T Consensus 89 ----------------------------------------------------~WkptlvLlRiNrAAt~V~WsP~enkFA 116 (361)
T KOG1523|consen 89 ----------------------------------------------------TWKPTLVLLRINRAATCVKWSPKENKFA 116 (361)
T ss_pred ----------------------------------------------------eeccceeEEEeccceeeEeecCcCceEE
Confidence 11344556667788999999998 8999
Q ss_pred EEeCCCcEEEEECCCCcEEEE---e--ecCCceEEEEEeeCCCcEEEEEECCCcEEEEEC-----CC-------------
Q 004404 583 SSSMDKTVRLWHLSSKTCLKI---F--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI-----PE------------- 639 (755)
Q Consensus 583 Sgs~DgtVrLWDl~t~~~~~~---~--~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl-----~t------------- 639 (755)
+|+.-+.|.||-++...--.. + .+.+.|+++.|+| ++-+|++|+.|++.|||.. ..
T Consensus 117 VgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PF 195 (361)
T KOG1523|consen 117 VGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPF 195 (361)
T ss_pred eccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcH
Confidence 999999999998876543211 1 2678899999999 8999999999999999974 11
Q ss_pred CcEEEec-cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCee-eeccccccccccccCCCCCeEEEEEccCCCeEEE
Q 004404 640 RQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (755)
Q Consensus 640 ~~~v~~~-~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~ 717 (755)
+++.... ...+.+..+.|+|+|..|+-.++|..+.+-|...... .... ....-+..++.|..+. .++
T Consensus 196 G~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~---------~~~~lP~ls~~~ise~--~vv 264 (361)
T KOG1523|consen 196 GQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV---------ATAQLPLLSVSWISEN--SVV 264 (361)
T ss_pred HHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccch---------hhccCCceeeEeecCC--cee
Confidence 1112112 3457899999999999999999999999999887652 1111 1122566677776543 355
Q ss_pred EEECCCcE
Q 004404 718 VTSADSRI 725 (755)
Q Consensus 718 sgs~Dg~I 725 (755)
.++.|..-
T Consensus 265 ~ag~~c~P 272 (361)
T KOG1523|consen 265 AAGYDCGP 272 (361)
T ss_pred ecCCCCCc
Confidence 66666443
No 208
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=8.9e-11 Score=116.84 Aligned_cols=216 Identities=12% Similarity=0.131 Sum_probs=151.8
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccc
Q 004404 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (755)
Q Consensus 457 ~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~ 536 (755)
..|.+-+|+|.+++|+.|..+|.|.|..+.+.......
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~------------------------------------------ 48 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE------------------------------------------ 48 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC------------------------------------------
Confidence 35777889999999999999999999987432110000
Q ss_pred cccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcE----EE--Eee---cC
Q 004404 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC----LK--IFS---HS 607 (755)
Q Consensus 537 ~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~----~~--~~~---h~ 607 (755)
.....++..+++|.++|+.++|. +.+|++|+. |.|+=|..+.... .. ... |.
T Consensus 49 -----------------~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 49 -----------------PPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred -----------------CCCCcceeeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 00123445568999999999998 566776665 9999997653211 11 111 22
Q ss_pred -----CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 004404 608 -----DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 608 -----~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~ 681 (755)
-.|+++-..| ..+-++.++.|+.++-||+++++... +.+|...|.+++-......+++|+.||++|+||++++
T Consensus 110 ~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 110 DAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred CcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecccc
Confidence 3589999999 55555556689999999999999885 5567789999998665668999999999999999999
Q ss_pred eeeeccccccccccccCCCC-CeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEee
Q 004404 682 KLQQKSPINLQNKKKRSHQR-KITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFK 738 (755)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~-~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~ 738 (755)
+....+........++.|-+ .|-+++-+.+ +|+ ++....+.+|. ..++++.|.
T Consensus 189 k~v~~ie~yk~~~~lRp~~g~wigala~~ed---Wlv-CGgGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 189 KHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLV-CGGGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred ceeEEeccccChhhcCcccCceeEEEeccCc---eEE-ecCCCceeEEeccCCCceEEEe
Confidence 99887654333333344443 5777776654 455 44556899999 445555443
No 209
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.8e-11 Score=127.03 Aligned_cols=257 Identities=12% Similarity=0.156 Sum_probs=165.2
Q ss_pred CEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccc
Q 004404 469 RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV 548 (755)
Q Consensus 469 ~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~ 548 (755)
..+|++-..|.|++||..+++...++.. ...+.+.+..+.-. .+..+.++..++.+..|....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~--~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs-------------- 103 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG--PPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRS-------------- 103 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC--CCCcccceEEecCC-CCCeeEEeccCCeEEEEEeec--------------
Confidence 5688888889999999999887777632 22333333333321 455666666777764332221
Q ss_pred cceeeecCCCceEEeccCC-CCEEEEEecCC-cEEEEEeC----CCcEEEEECCCCcE-EEEee--cCCceEEEEEeeCC
Q 004404 549 PETVFALSDKPICSFQGHL-DDVLDLSWSKS-QHLLSSSM----DKTVRLWHLSSKTC-LKIFS--HSDYVTCIQFNPVD 619 (755)
Q Consensus 549 ~~~v~~~s~k~i~~l~gH~-~~V~~L~~spd-~~LaSgs~----DgtVrLWDl~t~~~-~~~~~--h~~~VtsVafsP~d 619 (755)
........+.+|. .+..+++..-. +.+++|.. +-.|.+||++..+. +..+. |.+.|++|.|+|.+
T Consensus 104 ------~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 104 ------QAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred ------chhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 1233445556666 45566666533 55665543 56799999998655 66664 99999999999999
Q ss_pred CcEEEEEECCCcEEEEECCCCc----EEEeccCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeecccccccc-
Q 004404 620 DRYFISGSLDAKVRIWSIPERQ----VVDWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQN- 693 (755)
Q Consensus 620 g~~LaSgS~DgtVrIWDl~t~~----~v~~~~~~~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~- 693 (755)
.++|++||.||.|.|||+.... ++.++.+...|..+.|..++ +.|.+-++.....+|+++.+.....+..+...
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~ 257 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA 257 (376)
T ss_pred CCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh
Confidence 9999999999999999997642 44667777889999999877 56888899999999999998865544322100
Q ss_pred --ccccCCCCCeEEEEEccCCCeEEEEEEC-CCcEEEEE--------CCcceEEeec-CCccEEEEEE
Q 004404 694 --KKKRSHQRKITGFQFAPGSSSEVLVTSA-DSRIRVVD--------GIDLVHKFKG-ENYVQYMVCI 749 (755)
Q Consensus 694 --~~~~~h~~~Vtsl~fsPdg~~~L~sgs~-Dg~IrVWD--------~~~ll~~~~G-H~~~V~sv~f 749 (755)
.........+... .+|.+...+++++. -++..++- ..+.+.++.| |...|.++.|
T Consensus 258 ~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~ 324 (376)
T KOG1188|consen 258 DDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILF 324 (376)
T ss_pred hhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhh
Confidence 0001111222222 23433334555444 44544442 3456677887 4444555544
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.34 E-value=4.5e-11 Score=140.28 Aligned_cols=264 Identities=11% Similarity=0.110 Sum_probs=171.7
Q ss_pred eeEeecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCCceeeeee-ccc-ccCccccEEEeecCCCCceeccccCCC
Q 004404 449 CQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELL-EKQ-EDGHLNMLLLANGSPEPTSLSPKHLDN 525 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~~~~~~l~-~~~-~~~~~~~v~~v~~s~dg~~l~~~s~d~ 525 (755)
+..|..|...|..++.++.. .+|+|||.||+|++|+..+........ ... .....+.+..+...+.+..++.+..+|
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 34456799999999998754 899999999999999986543321110 000 112345667778888888888888898
Q ss_pred ceeeecccccccccccccCcccccceeeecCCCceEEeccC-CCCEEEE-EecCC--c-EEEEEeCCCcEEEEECCCCcE
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH-LDDVLDL-SWSKS--Q-HLLSSSMDKTVRLWHLSSKTC 600 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH-~~~V~~L-~~spd--~-~LaSgs~DgtVrLWDl~t~~~ 600 (755)
.+...+.+....... .....+....+ .+.+..+ ++... . .|+.+..-+.|..||++....
T Consensus 1121 ~v~~~~id~~~~~~~---------------~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKR---------------VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred eEEEEEccccccccc---------------eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 887666554311000 00111111111 1223333 33322 3 678888889999999998776
Q ss_pred EEEee---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe--ccCCCCEEEEEEccCC---CEEEEE-E-CC
Q 004404 601 LKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW--NDLHEMVTAACYTPDG---QGALVG-S-YK 670 (755)
Q Consensus 601 ~~~~~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~--~~~~~~VtsvafSPdG---~~LasG-s-~D 670 (755)
..+++ ..+.|++++.+| .+.+++.|+..|.+.+||++=+.++.. ..++.++..|+.+|-. ...+++ . ..
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred HHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 66665 568899999999 899999999999999999998887743 3445678888877733 345544 4 57
Q ss_pred CcEEEEECCCCeeeecccccccccc----------ccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 671 GSCHLYNTSENKLQQKSPINLQNKK----------KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 671 G~I~lwDl~~~~~~~~~~i~~~~~~----------~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+.|.+|++.++.....+-..-.... .+.+.-......+.. +...+++|+.|..||.||
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeecc
Confidence 7899999999876654432200000 001111222222332 233899999999999999
No 211
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.32 E-value=1.3e-10 Score=120.72 Aligned_cols=343 Identities=18% Similarity=0.254 Sum_probs=204.4
Q ss_pred HHHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCC-CCccccccCCcccccceeEEeeccccccccCccccC
Q 004404 329 IEEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDT 404 (755)
Q Consensus 329 ~~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~-g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~ 404 (755)
++.+..+.||.+.|+.....+. +-+.++|+++| +|--.. |+ .|. +|+ |..+
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvr-v~lkrds~q-------~wp-sI~--------~~mP-------- 68 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVR-VWLKRDSGQ-------YWP-SIY--------HYMP-------- 68 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceee-eEEeccccc-------cCc-hhh--------hhCC--------
Confidence 3456889999999998776654 88999999999 883321 11 111 111 0000
Q ss_pred CccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEe
Q 004404 405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (755)
Q Consensus 405 ~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWd 484 (755)
.+ -.+.........++.|...|.|.-+... .++..+...+....|...|..+-|+-...++++.+.|..+.---
T Consensus 69 ----~~-~~~~~y~~e~~~L~vg~~ngtvtefs~s-edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc 142 (404)
T KOG1409|consen 69 ----SP-CSAMEYVSESRRLYVGQDNGTVTEFALS-EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHC 142 (404)
T ss_pred ----CC-ceEeeeeccceEEEEEEecceEEEEEhh-hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEe
Confidence 00 0111112223457888999999888765 33444444566678999999999999999999999997665433
Q ss_pred CcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEec
Q 004404 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564 (755)
Q Consensus 485 l~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~ 564 (755)
.+.+..+..+........... +......+...+.+. ...+....-.++..+.
T Consensus 143 ~e~~~~lg~Y~~~~~~t~~~~--------d~~~~fvGd~~gqvt--------------------~lr~~~~~~~~i~~~~ 194 (404)
T KOG1409|consen 143 TESGNRLGGYNFETPASALQF--------DALYAFVGDHSGQIT--------------------MLKLEQNGCQLITTFN 194 (404)
T ss_pred eccCCcccceEeeccCCCCce--------eeEEEEecccccceE--------------------EEEEeecCCceEEEEc
Confidence 444433322210000000000 000111111111111 1133334456788999
Q ss_pred cCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCC--cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc
Q 004404 565 GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (755)
Q Consensus 565 gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~--~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~ 641 (755)
+|.+.|++++|.|. +.|++|..|..|.+||+.-. .....+.|...|..++..+ .-..+++++.||.|.+|+++...
T Consensus 195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecccee
Confidence 99999999999996 88999999999999998754 4444456999999999888 78899999999999999987643
Q ss_pred EE--Eecc----------------------------CC-----CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 642 VV--DWND----------------------------LH-----EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 642 ~v--~~~~----------------------------~~-----~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
.. .|.. |+ ..|...+ +.+.....+-+..-.+|+-|.-...+...
T Consensus 274 ~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c-~s~~~~~p~mg~e~~vR~~~~c~~~i~~~ 352 (404)
T KOG1409|consen 274 VETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKC-SSNRSSYPTMGFEFSVRVCDSCYPTIKDE 352 (404)
T ss_pred ecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccc-ccCccccccccceeEEEEecccchhhhcC
Confidence 22 1111 00 0111111 11122222223344455555443333222
Q ss_pred cccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECCcceE
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH 735 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~~ll~ 735 (755)
.+.++ .....-...|+.+.+...-. +|++++.|..|+|||...+..
T Consensus 353 ~~t~L--A~phei~tgItamhlqetlg-lLvTsG~~Rvi~iwd~~~v~s 398 (404)
T KOG1409|consen 353 ERTPL--AIPHEIKTGITAMHLQETLG-LLVTSGTDRVIKIWDVRSVCS 398 (404)
T ss_pred CCCcc--ccccccccceeEEEhhhhcc-ceeecCCceEEEEEechhhhh
Confidence 21111 01111224688888877655 799999999999999654443
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.32 E-value=1.2e-11 Score=134.54 Aligned_cols=165 Identities=17% Similarity=0.242 Sum_probs=133.1
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEee-----cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC--------------C
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE--------------R 640 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~-----h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t--------------~ 640 (755)
-|+.|-.-|.|++.|....+..+.|. ....|+||.|-|.+...|+.+-.+|.+.+||..- +
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 36777777888888876643333332 4578999999997778999999999999997521 0
Q ss_pred c---------------EEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEE
Q 004404 641 Q---------------VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (755)
Q Consensus 641 ~---------------~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (755)
. +..|......|...+|+|||++||+.+.||.+||||..+.+++... +.--+...+
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m---------kSYFGGLLC 337 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM---------KSYFGGLLC 337 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH---------HhhccceEE
Confidence 0 1122333357889999999999999999999999999988776542 355678999
Q ss_pred EEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEEEEe
Q 004404 706 FQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVLFFF 754 (755)
Q Consensus 706 l~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~F~f 754 (755)
++|+|||+ +|++|+.|.-|.||. -++++++=.||+.+|..|+|-||..
T Consensus 338 vcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt 387 (636)
T KOG2394|consen 338 VCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTT 387 (636)
T ss_pred EEEcCCcc-EEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccc
Confidence 99999999 899999999999999 4789999999999999999988754
No 213
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.31 E-value=2.3e-10 Score=115.35 Aligned_cols=135 Identities=14% Similarity=0.266 Sum_probs=98.0
Q ss_pred cEEEEECCC-CcEEEEee--cCCceEEEEEeeCCCcEEEEE--ECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCE
Q 004404 589 TVRLWHLSS-KTCLKIFS--HSDYVTCIQFNPVDDRYFISG--SLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQG 663 (755)
Q Consensus 589 tVrLWDl~t-~~~~~~~~--h~~~VtsVafsP~dg~~LaSg--S~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~ 663 (755)
...||.++. +.....+. ..++|.+++|+| +++.|++. ..+..|.+||++ .+.+..+. ...+..+.|+|+|++
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~ 114 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRF 114 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCE
Confidence 355555532 23344443 556799999999 88876554 467899999997 44443333 467889999999999
Q ss_pred EEEEEC---CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE------CCCcEEEEE-CCcc
Q 004404 664 ALVGSY---KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS------ADSRIRVVD-GIDL 733 (755)
Q Consensus 664 LasGs~---DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs------~Dg~IrVWD-~~~l 733 (755)
|++++. .|.|.+||+.+.+.+... .| ..++.++|+|+|+ +|+++. .|..++||+ .|++
T Consensus 115 l~~~g~~n~~G~l~~wd~~~~~~i~~~----------~~-~~~t~~~WsPdGr-~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 115 LVLAGFGNLNGDLEFWDVRKKKKISTF----------EH-SDATDVEWSPDGR-YLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EEEEEccCCCcEEEEEECCCCEEeecc----------cc-CcEEEEEEcCCCC-EEEEEEeccceeccccEEEEEecCeE
Confidence 999874 467999999988777642 23 3578999999999 666664 388999999 6777
Q ss_pred eEEee
Q 004404 734 VHKFK 738 (755)
Q Consensus 734 l~~~~ 738 (755)
+.+..
T Consensus 183 l~~~~ 187 (194)
T PF08662_consen 183 LYKKP 187 (194)
T ss_pred eEecc
Confidence 76544
No 214
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=5e-10 Score=125.91 Aligned_cols=223 Identities=16% Similarity=0.119 Sum_probs=146.2
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECC---CcEEEEeCcCCceeeeeecccccCccccE
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNML 506 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~D---GtVrVWdl~t~~~~~~l~~~~~~~~~~~v 506 (755)
...|.+++...... +.+..+...+...+|+|||++|+.+..+ ..|++|++.+++....
T Consensus 169 ~~~l~~~d~~g~~~------~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~------------- 229 (417)
T TIGR02800 169 RYELQVADYDGANP------QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV------------- 229 (417)
T ss_pred cceEEEEcCCCCCC------EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-------------
Confidence 44566666543322 3344577789999999999999987654 4788998865432110
Q ss_pred EEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCc-EEE-EE
Q 004404 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLL-SS 584 (755)
Q Consensus 507 ~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~-~La-Sg 584 (755)
..+.+.+..++|+|++ .|+ +.
T Consensus 230 ---------------------------------------------------------~~~~~~~~~~~~spDg~~l~~~~ 252 (417)
T TIGR02800 230 ---------------------------------------------------------ASFPGMNGAPAFSPDGSKLAVSL 252 (417)
T ss_pred ---------------------------------------------------------ecCCCCccceEECCCCCEEEEEE
Confidence 1112234457788883 444 44
Q ss_pred eCCC--cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC-C--cEEEEECCCCcEEEeccCCCCEEEEEEcc
Q 004404 585 SMDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-A--KVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (755)
Q Consensus 585 s~Dg--tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D-g--tVrIWDl~t~~~v~~~~~~~~VtsvafSP 659 (755)
+.++ .|++|++.++.......+........|+| ++++|+..+.. + .|.++|+.+++...+......+..+.|+|
T Consensus 253 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp 331 (417)
T TIGR02800 253 SKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP 331 (417)
T ss_pred CCCCCccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECC
Confidence 4444 58999998877655555555566789999 88888776653 3 58888988887766655566778899999
Q ss_pred CCCEEEEEECCC---cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC---cEEEEE-CCc
Q 004404 660 DGQGALVGSYKG---SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS---RIRVVD-GID 732 (755)
Q Consensus 660 dG~~LasGs~DG---~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg---~IrVWD-~~~ 732 (755)
+|++|+.+..++ .|++||+.++...... . ........|+|++. +|+.++.++ .+.+.+ .+.
T Consensus 332 dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~----------~-~~~~~~p~~spdg~-~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 332 DGDLIAFVHREGGGFNIAVMDLDGGGERVLT----------D-TGLDESPSFAPNGR-MILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred CCCEEEEEEccCCceEEEEEeCCCCCeEEcc----------C-CCCCCCceECCCCC-EEEEEEeCCCcEEEEEEECCCc
Confidence 999999988776 7999999876543221 1 11234568999998 555554433 355556 355
Q ss_pred ceEEeecCC
Q 004404 733 LVHKFKGEN 741 (755)
Q Consensus 733 ll~~~~GH~ 741 (755)
....+..+.
T Consensus 400 ~~~~~~~~~ 408 (417)
T TIGR02800 400 FRARLPLGN 408 (417)
T ss_pred eeeECCCCC
Confidence 555555443
No 215
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.30 E-value=3.3e-09 Score=111.47 Aligned_cols=181 Identities=15% Similarity=0.176 Sum_probs=130.4
Q ss_pred EeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCcccc
Q 004404 426 HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM 505 (755)
Q Consensus 426 sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~ 505 (755)
...+-.++++++.+.+...... -...+|.+|.++. ++|+.+=++. |.|||+.+.+.+..+..
T Consensus 63 ~~~qpr~Lkv~~~Kk~~~ICe~------~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t--------- 124 (391)
T KOG2110|consen 63 SIKQPRKLKVVHFKKKTTICEI------FFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIET--------- 124 (391)
T ss_pred ecCCCceEEEEEcccCceEEEE------ecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhc---------
Confidence 3334456777776544322111 1457899999974 4677776654 99999988776555411
Q ss_pred EEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEE-
Q 004404 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLS- 583 (755)
Q Consensus 506 v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaS- 583 (755)
...+...+.+++.++. .+|+.
T Consensus 125 ---------------------------------------------------------~~~n~~gl~AlS~n~~n~ylAyp 147 (391)
T KOG2110|consen 125 ---------------------------------------------------------TPPNPKGLCALSPNNANCYLAYP 147 (391)
T ss_pred ---------------------------------------------------------cCCCccceEeeccCCCCceEEec
Confidence 1112223444444443 34442
Q ss_pred -EeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCc-EEEEECCCCcEEEecc-C--CCCEEEEEE
Q 004404 584 -SSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAK-VRIWSIPERQVVDWND-L--HEMVTAACY 657 (755)
Q Consensus 584 -gs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~Dgt-VrIWDl~t~~~v~~~~-~--~~~Vtsvaf 657 (755)
....|.|.|||+.+-+.+.++. |.+.+-+++|+| +|.+||++|+.|+ ||||.+.+++.+..+. . ...|.+++|
T Consensus 148 ~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 148 GSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred CCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 2235889999999999999987 999999999999 9999999999998 6899999998774332 2 247899999
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCe
Q 004404 658 TPDGQGALVGSYKGSCHLYNTSENK 682 (755)
Q Consensus 658 SPdG~~LasGs~DG~I~lwDl~~~~ 682 (755)
+|++++|++.+..++|++|.+....
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEecccc
Confidence 9999999999999999999987543
No 216
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.30 E-value=2.4e-11 Score=131.83 Aligned_cols=159 Identities=15% Similarity=0.318 Sum_probs=121.8
Q ss_pred eeecCCCceEEeccCCCCEEEEEecCCc-EEEEEeCCCcEEEEECCCCcEEEEe-ecCCceEEEEEeeCCCcEEEEEECC
Q 004404 552 VFALSDKPICSFQGHLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLD 629 (755)
Q Consensus 552 v~~~s~k~i~~l~gH~~~V~~L~~spd~-~LaSgs~DgtVrLWDl~t~~~~~~~-~h~~~VtsVafsP~dg~~LaSgS~D 629 (755)
+..-.++.-..+.+|.+.|.+-.|+|++ -|++++.||.|++|.- +|-+..++ +...+|.|++|.| +.+.++-|- .
T Consensus 89 il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p-~S~~vl~c~-g 165 (737)
T KOG1524|consen 89 ILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAP-NSNSIVFCQ-G 165 (737)
T ss_pred EecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECC-CCCceEEec-C
Confidence 3334455566778999999999999995 4999999999999984 44443344 3678999999999 554444333 3
Q ss_pred CcEEEEECCC-CcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEE
Q 004404 630 AKVRIWSIPE-RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (755)
Q Consensus 630 gtVrIWDl~t-~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (755)
+.+.|=-+.. -++++|..|.+.|.++.|+|....+++|+.|-..++||.....+... ..|..+|++++|
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S----------~~~ey~ITSva~ 235 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS----------AAEEYAITSVAF 235 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC----------Chhccceeeeee
Confidence 5566655543 46779999999999999999999999999999999999876555432 278999999999
Q ss_pred ccCCCeEEEEEECCCcEE
Q 004404 709 APGSSSEVLVTSADSRIR 726 (755)
Q Consensus 709 sPdg~~~L~sgs~Dg~Ir 726 (755)
.|+ . .+++++.. ++|
T Consensus 236 npd-~-~~~v~S~n-t~R 250 (737)
T KOG1524|consen 236 NPE-K-DYLLWSYN-TAR 250 (737)
T ss_pred ccc-c-ceeeeeee-eee
Confidence 999 3 56666653 444
No 217
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.30 E-value=1.3e-09 Score=118.85 Aligned_cols=229 Identities=13% Similarity=0.144 Sum_probs=136.7
Q ss_pred EEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccC-CCceeeecccccccccccccCccccc
Q 004404 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVP 549 (755)
Q Consensus 471 LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~-d~~i~~~~~~~~~~~~s~s~d~~~~~ 549 (755)
+++...++.|.+|++.+......+.... .......+.++|++..+..+.. ...+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~~~~~~~i~--------------------- 60 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD---VPGQVQPMVISPDKRHLYVGVRPEFRVL--------------------- 60 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe---cCCCCccEEECCCCCEEEEEECCCCcEE---------------------
Confidence 3344678999999996432222211111 1123345678888887765432 22221
Q ss_pred ceeeecC--CC--ceEEeccCCCCEEEEEecCC-cEEEEEe-CCCcEEEEECCCC----cEEEEeecCCceEEEEEeeCC
Q 004404 550 ETVFALS--DK--PICSFQGHLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSK----TCLKIFSHSDYVTCIQFNPVD 619 (755)
Q Consensus 550 ~~v~~~s--~k--~i~~l~gH~~~V~~L~~spd-~~LaSgs-~DgtVrLWDl~t~----~~~~~~~h~~~VtsVafsP~d 619 (755)
+|.+. ++ .+.... ..+....++++|+ ++|++++ .++.|.+|++.+. +.+..+.+.....+++++| +
T Consensus 61 --~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~ 136 (330)
T PRK11028 61 --SYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-D 136 (330)
T ss_pred --EEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-C
Confidence 11111 11 111111 2234678999998 4566555 4899999999742 2333344445678889999 8
Q ss_pred CcEEEE-EECCCcEEEEECCCCcEEE-------eccCCCCEEEEEEccCCCEEEEEEC-CCcEEEEECCC--Ceeeeccc
Q 004404 620 DRYFIS-GSLDAKVRIWSIPERQVVD-------WNDLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSE--NKLQQKSP 688 (755)
Q Consensus 620 g~~LaS-gS~DgtVrIWDl~t~~~v~-------~~~~~~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~--~~~~~~~~ 688 (755)
++++++ ...+++|.+||+.+...+. ..........++|+|+|++|+++.. ++.|.+|++.. +.+.....
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 887755 4556999999997632221 1122345678999999999998876 89999999974 33321111
Q ss_pred cccccccccCCCCCeEEEEEccCCCeEEEEE-ECCCcEEEEE
Q 004404 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRIRVVD 729 (755)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg-s~Dg~IrVWD 729 (755)
+....... .+......+.|+|+++ +|+++ ..++.|.+|+
T Consensus 217 ~~~~p~~~-~~~~~~~~i~~~pdg~-~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 217 LDMMPADF-SDTRWAADIHITPDGR-HLYACDRTASLISVFS 256 (330)
T ss_pred EecCCCcC-CCCccceeEEECCCCC-EEEEecCCCCeEEEEE
Confidence 11000001 1223345789999998 56666 4578999998
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.5e-10 Score=131.19 Aligned_cols=207 Identities=13% Similarity=0.184 Sum_probs=133.5
Q ss_pred ecCCCcEEEEe--CCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEE-CCCcEEEEeCcCCceeee
Q 004404 417 TDDSQDVSFHG--QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGE 493 (755)
Q Consensus 417 ~~ds~~~l~sg--~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs-~DGtVrVWdl~t~~~~~~ 493 (755)
++++..+++.. ..+..|++|++.+++... +..+.+|. ..++|+|||++|+.++ .+|.+.||.+....
T Consensus 212 SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~---l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~---- 281 (429)
T PRK01742 212 SPDGSKLAYVSFENKKSQLVVHDLRSGARKV---VASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANG---- 281 (429)
T ss_pred cCCCCEEEEEEecCCCcEEEEEeCCCCceEE---EecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCC----
Confidence 34444444433 234679999987665332 22344444 4689999999888765 68877777542100
Q ss_pred eecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEE
Q 004404 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (755)
Q Consensus 494 l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L 573 (755)
..+..+..|...+...
T Consensus 282 ----------------------------------------------------------------~~~~~lt~~~~~~~~~ 297 (429)
T PRK01742 282 ----------------------------------------------------------------GTPSQLTSGAGNNTEP 297 (429)
T ss_pred ----------------------------------------------------------------CCeEeeccCCCCcCCE
Confidence 0111223344556788
Q ss_pred EecCCc-EEEE-EeCCCcEEEEECCCC-cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCC
Q 004404 574 SWSKSQ-HLLS-SSMDKTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650 (755)
Q Consensus 574 ~~spd~-~LaS-gs~DgtVrLWDl~t~-~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~ 650 (755)
.|+|++ .|+. +..++..+||++... .....+.+.. ..+.|+| ++++|+..+.++ +.+||+.+++...+... .
T Consensus 298 ~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~ 372 (429)
T PRK01742 298 SWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSST-F 372 (429)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecCC-C
Confidence 999984 4554 446788888876532 2223334443 4678999 999998887765 55699998876544332 2
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECC--CCeeeeccccccccccccCCCCCeEEEEEccC
Q 004404 651 MVTAACYTPDGQGALVGSYKGSCHLYNTS--ENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (755)
Q Consensus 651 ~VtsvafSPdG~~LasGs~DG~I~lwDl~--~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd 711 (755)
....+.|+|+|++|+.++.++.+.+|.+. ++..... +..|.+.+...+|+|-
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~---------l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR---------LPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE---------ccCCCCCCCCcccCCC
Confidence 34578899999999999999988887753 3444433 2367778889999984
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.29 E-value=5.9e-10 Score=131.11 Aligned_cols=293 Identities=9% Similarity=0.052 Sum_probs=181.6
Q ss_pred ecCCCcEEEEeCCCcEEEEeeCCCCccc-cee-eeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeee-
Q 004404 417 TDDSQDVSFHGQERVRVRQYGKSCKDLT-ALY-KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE- 493 (755)
Q Consensus 417 ~~ds~~~l~sg~~dg~Vriwd~~~~~~~-~~~-~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~- 493 (755)
+.....++++|+.||+|++|+...-+.. ..+ ...++.--.+.+.++.+.+.+..+|.++.||.|++.++........
T Consensus 1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccce
Confidence 3444578899999999999998754433 122 1233334567899999999999999999999999999876321111
Q ss_pred --eecccc-cCccccEEEeecCCC-Cc-eeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCC
Q 004404 494 --LLEKQE-DGHLNMLLLANGSPE-PT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (755)
Q Consensus 494 --l~~~~~-~~~~~~v~~v~~s~d-g~-~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~ 568 (755)
...... ......+...++... .. .++.+...+.+..+..... ..+|.+ +..-..+
T Consensus 1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~--------------~~~w~l------k~~~~hG 1196 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR--------------HDAWRL------KNQLRHG 1196 (1431)
T ss_pred eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh--------------hhHHhh------hcCcccc
Confidence 101111 111112222222221 11 2333222222211111100 011211 1222346
Q ss_pred CEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCC--cEEEEEE--CCCcEEEEECCCCc
Q 004404 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDD--RYFISGS--LDAKVRIWSIPERQ 641 (755)
Q Consensus 569 ~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg--~~LaSgS--~DgtVrIWDl~t~~ 641 (755)
-|++++.+|. +.++.|...|.+-+||++-+.++.... +..+++.+..+|... ...++++ ..+.|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 7999999997 789999999999999999888888776 557888888888444 4555554 46789999999875
Q ss_pred EEEeccCC--------------------CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeee-cc-------------
Q 004404 642 VVDWNDLH--------------------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ-KS------------- 687 (755)
Q Consensus 642 ~v~~~~~~--------------------~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~-~~------------- 687 (755)
....+... -.....++...+.++++|+.|..|+.||........ ..
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s 1356 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSES 1356 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchh
Confidence 44322111 112233444455789999999999999986543320 00
Q ss_pred ---------c-----c-------------------ccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 688 ---------P-----I-------------------NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 688 ---------~-----i-------------------~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+ + ......-..|...|+++++......+|++++.||.|+||.
T Consensus 1357 ~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1357 YDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0 0 0000112358889999998776666899999999999993
No 220
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.28 E-value=2.8e-10 Score=117.55 Aligned_cols=262 Identities=15% Similarity=0.174 Sum_probs=174.5
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCE-EEEEECCCcEEEEeCcCCceeeeeec
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY-LASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~-LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
.++-..+.....+++|.+|++...+... .+..-..++.++.|||||+. |.|..-|-.|.||.+.+.+...-
T Consensus 58 ads~~ilC~~yk~~~vqvwsl~Qpew~c-----kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--- 129 (447)
T KOG4497|consen 58 ADSCHILCVAYKDPKVQVWSLVQPEWYC-----KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--- 129 (447)
T ss_pred ccceeeeeeeeccceEEEEEeecceeEE-----EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---
Confidence 3444556667889999999998666432 24456788999999999975 55556688999999977654322
Q ss_pred ccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec
Q 004404 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
.-....+...++.++|.+.+......... .+..... . ....+..+.-.+-+.+.|.|+
T Consensus 130 ---~~pK~~~kg~~f~~dg~f~ai~sRrDCkd------yv~i~~c---------~----~W~ll~~f~~dT~DltgieWs 187 (447)
T KOG4497|consen 130 ---PHPKTNVKGYAFHPDGQFCAILSRRDCKD------YVQISSC---------K----AWILLKEFKLDTIDLTGIEWS 187 (447)
T ss_pred ---cccccCceeEEECCCCceeeeeecccHHH------HHHHHhh---------H----HHHHHHhcCCCcccccCceEC
Confidence 11123346788999998877654332210 0000000 0 112344555666778999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-------------
Q 004404 577 KSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV------------- 643 (755)
Q Consensus 577 pd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v------------- 643 (755)
|++. .+-+||.--.-.+..+.-.-.+..++|+| .+++|+.|+.|+.+||.+--+.+..
T Consensus 188 Pdg~--------~laVwd~~Leykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~ 258 (447)
T KOG4497|consen 188 PDGN--------WLAVWDNVLEYKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPT 258 (447)
T ss_pred CCCc--------EEEEecchhhheeeeeeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCch
Confidence 9853 23466643333333344456788899999 8999999999999998763221100
Q ss_pred ---------------------------------------------Eec---------cCCCCEEEEEEccCCCEEEEEEC
Q 004404 644 ---------------------------------------------DWN---------DLHEMVTAACYTPDGQGALVGSY 669 (755)
Q Consensus 644 ---------------------------------------------~~~---------~~~~~VtsvafSPdG~~LasGs~ 669 (755)
.+. .....+.-++|++|..++++-..
T Consensus 259 ~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 259 LHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred hhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence 000 00124667899999999998653
Q ss_pred --CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 670 --KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 670 --DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
-+.+.+||++..++...+ ....+|..+.|.|..+ .|+++....++++|-
T Consensus 339 ~~PnalW~Wdlq~l~l~avL----------iQk~piraf~WdP~~p-rL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVL----------IQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWA 389 (447)
T ss_pred CCCceEEEEechhhhhhhhh----------hhccceeEEEeCCCCc-eEEEEcCCceEEEEc
Confidence 367999999987766543 3456799999999877 788888788899998
No 221
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=7.3e-11 Score=125.70 Aligned_cols=194 Identities=21% Similarity=0.243 Sum_probs=132.9
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecc
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~ 497 (755)
......+.+|..||.+|+|++... ....+..+|.+.|.++.|+|||++|++-+.| ..+||++.++..+.....
T Consensus 153 ~~~gs~latgg~dg~lRv~~~Ps~-----~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~- 225 (398)
T KOG0771|consen 153 NGDGSKLATGGTDGTLRVWEWPSM-----LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP- 225 (398)
T ss_pred cCCCCEeeeccccceEEEEecCcc-----hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence 333456789999999999996533 3334456899999999999999999999999 999999999855544321
Q ss_pred cccCccccEEEeecCCCC---ceeccc--cCCCceeeecccccccccccccCcccccceeeecCC-CceEEeccCCCCEE
Q 004404 498 QEDGHLNMLLLANGSPEP---TSLSPK--HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVL 571 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~dg---~~l~~~--s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~-k~i~~l~gH~~~V~ 571 (755)
......+..+.|+.+. .+.+.. ...+.+..+.. .+|.-.. -+..+...-...|.
T Consensus 226 --~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~------------------~~w~~~~~l~~~~~~~~~~siS 285 (398)
T KOG0771|consen 226 --FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI------------------SLWSGSNFLRLRKKIKRFKSIS 285 (398)
T ss_pred --cccchhhhhceecccCCCceEEEEEecCCCCceeEEEe------------------eeeccccccchhhhhhccCcce
Confidence 2222333344455444 222111 11111110000 1111110 01111111223599
Q ss_pred EEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC
Q 004404 572 DLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (755)
Q Consensus 572 ~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t 639 (755)
+++.+++ .+++.|+.||.|-|++..+-++++... |...|+.|+|+| +.+++++.+.|.++.|..+.-
T Consensus 286 sl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 286 SLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999 678899999999999999999988886 999999999999 999999999999998887654
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.7e-10 Score=120.30 Aligned_cols=246 Identities=15% Similarity=0.185 Sum_probs=163.9
Q ss_pred cccCCEEEEEEcCCCC--EEEEEECCCcEEEEeCcCCceeeeeecc-cccCccccEEEeecCCCCceeccccCCCceeee
Q 004404 454 AHNGSIWSIKFSLDGR--YLASAGEDCVIHVWQVVESERKGELLEK-QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~--~LaTgs~DGtVrVWdl~t~~~~~~l~~~-~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
.-...|..++|.-+++ .|.-++.|..+....+........+... ........+..+... ++.++.+. ..+.+..+
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg~Litc~-~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DGTLITCV-SSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CCEEEEEe-cCCcEEEE
Confidence 3456788888876654 5666667777888877766654443100 011111222211111 22332222 22222111
Q ss_pred cccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCC--CcEEEEECCCCcEEEEee-
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMD--KTVRLWHLSSKTCLKIFS- 605 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~D--gtVrLWDl~t~~~~~~~~- 605 (755)
.... -++...++..+..+ ..+..|.-++. ..+++|+.. ..+++||+...+.+..-.
T Consensus 131 ~~k~------------------~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN 191 (412)
T KOG3881|consen 131 HDKS------------------GDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN 191 (412)
T ss_pred eccC------------------CccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC
Confidence 1000 00112333344433 34566666664 567789998 899999998874433322
Q ss_pred ---------cCCceEEEEEeeCC--CcEEEEEECCCcEEEEECCCCc-EE-EeccCCCCEEEEEEccCCCEEEEEECCCc
Q 004404 606 ---------HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPERQ-VV-DWNDLHEMVTAACYTPDGQGALVGSYKGS 672 (755)
Q Consensus 606 ---------h~~~VtsVafsP~d--g~~LaSgS~DgtVrIWDl~t~~-~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~ 672 (755)
-.-.++.+.|.| . ...|++++.-+.||+||.+.++ ++ .+.-...+++++...|+|++|++|..-|.
T Consensus 192 vpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~ 270 (412)
T KOG3881|consen 192 VPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ 270 (412)
T ss_pred CCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch
Confidence 223578999998 6 7899999999999999998753 44 44445678999999999999999999999
Q ss_pred EEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 673 CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 673 I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+..||++.+++... .+++-.+.|.+|..+|.++ +|+++|-|..|||+|.
T Consensus 271 l~~FD~r~~kl~g~--------~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 271 LAKFDLRGGKLLGC--------GLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDI 319 (412)
T ss_pred hheecccCceeecc--------ccCCccCCcceEEEcCCCc-eEEeeccceeEEEeec
Confidence 99999999988763 2457889999999999988 8999999999999994
No 223
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.9e-09 Score=122.71 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=110.5
Q ss_pred EEEecCC-cEEE-EEeCCCc--EEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEEC-CC--cEEEEECCCCcEEE
Q 004404 572 DLSWSKS-QHLL-SSSMDKT--VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQVVD 644 (755)
Q Consensus 572 ~L~~spd-~~La-Sgs~Dgt--VrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~-Dg--tVrIWDl~t~~~v~ 644 (755)
...|+|+ ..|+ +...++. |++||+.+++..+...+.......+|+| |+++|+..+. ++ .|.++|+.+++...
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 4678887 3344 4555664 7888988877655444656678889999 8888776654 33 46677888887665
Q ss_pred eccCCCCEEEEEEccCCCEEEEEECC-C--cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 645 WNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 645 ~~~~~~~VtsvafSPdG~~LasGs~D-G--~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
+..........+|+|||++|+..+.+ + .|.++|+.++....... . .......|+|+|+.++++...
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~---------~--~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS---------T--RLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC---------C--CCCCCceECCCCCEEEEEEec
Confidence 43333334567999999998886553 3 46667888776543211 1 111234799999854444444
Q ss_pred CCc--EEEEE-CCcceEEeecCCccEEEEEEEEE
Q 004404 722 DSR--IRVVD-GIDLVHKFKGENYVQYMVCIVLF 752 (755)
Q Consensus 722 Dg~--IrVWD-~~~ll~~~~GH~~~V~sv~fs~F 752 (755)
++. |.+++ .+.....+..+...+...+|+||
T Consensus 414 ~g~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 414 QGKQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 544 66677 46677777777666777777775
No 224
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2.6e-09 Score=121.00 Aligned_cols=234 Identities=12% Similarity=0.076 Sum_probs=148.5
Q ss_pred EEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECC---CcEEEEeCcCCceeeeeecccccCccccEEE
Q 004404 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (755)
Q Consensus 432 ~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~D---GtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~ 508 (755)
.|.++|...... +.+..|...+....|+|||++|+..+.+ ..|.+|++.+++... +
T Consensus 180 ~l~~~d~~g~~~------~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-------------- 238 (430)
T PRK00178 180 TLQRSDYDGARA------VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-------------- 238 (430)
T ss_pred EEEEECCCCCCc------eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c--------------
Confidence 566666654332 2344577889999999999998877644 357788876543211 0
Q ss_pred eecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEE-EEeC
Q 004404 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SSSM 586 (755)
Q Consensus 509 v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~La-Sgs~ 586 (755)
....+.+....|+|+ .+|+ +...
T Consensus 239 -------------------------------------------------------~~~~g~~~~~~~SpDG~~la~~~~~ 263 (430)
T PRK00178 239 -------------------------------------------------------TNFEGLNGAPAWSPDGSKLAFVLSK 263 (430)
T ss_pred -------------------------------------------------------cCCCCCcCCeEECCCCCEEEEEEcc
Confidence 000112334678887 3444 4444
Q ss_pred CC--cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEEC-CC--cEEEEECCCCcEEEeccCCCCEEEEEEccCC
Q 004404 587 DK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDG 661 (755)
Q Consensus 587 Dg--tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~-Dg--tVrIWDl~t~~~v~~~~~~~~VtsvafSPdG 661 (755)
++ .|++||+.+++......+........|+| +++.|+..+. ++ .|.++++.+++...+...........|+|+|
T Consensus 264 ~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg 342 (430)
T PRK00178 264 DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADG 342 (430)
T ss_pred CCCceEEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 44 58888999887655444555667789999 8887776664 33 5777888888765544333344567899999
Q ss_pred CEEEEEECC-C--cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC--cEEEEE-CCcceE
Q 004404 662 QGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS--RIRVVD-GIDLVH 735 (755)
Q Consensus 662 ~~LasGs~D-G--~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg--~IrVWD-~~~ll~ 735 (755)
++|+....+ + .|++||+.++...... +........|+|+|+.++++...++ .|.+++ .+....
T Consensus 343 ~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-----------~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~ 411 (430)
T PRK00178 343 KTLVMVHRQDGNFHVAAQDLQRGSVRILT-----------DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRL 411 (430)
T ss_pred CEEEEEEccCCceEEEEEECCCCCEEEcc-----------CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence 999887653 3 5889999887654321 1111224589999984444444433 466667 355555
Q ss_pred EeecCCccEEEEEEEEEE
Q 004404 736 KFKGENYVQYMVCIVLFF 753 (755)
Q Consensus 736 ~~~GH~~~V~sv~fs~F~ 753 (755)
.+..+...+...++++++
T Consensus 412 ~l~~~~g~~~~p~ws~~~ 429 (430)
T PRK00178 412 PLPTAQGEVREPSWSPYL 429 (430)
T ss_pred ECcCCCCCcCCCccCCCC
Confidence 666665667777777664
No 225
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=2.1e-11 Score=132.58 Aligned_cols=171 Identities=19% Similarity=0.298 Sum_probs=133.5
Q ss_pred ceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeC-CCcEEEEEECCCcEEE
Q 004404 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPV-DDRYFISGSLDAKVRI 634 (755)
Q Consensus 559 ~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~-dg~~LaSgS~DgtVrI 634 (755)
.-.++.||++-|+||.|+.+ .+|++|+.|-.+.|||.-..++++.+. |...|.++.|-|. +++++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34578999999999999998 678899999999999999889988885 9999999999993 3568899999999999
Q ss_pred EECCCCc-----------EEEeccCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeeccc-cccccccccCCCC
Q 004404 635 WSIPERQ-----------VVDWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSP-INLQNKKKRSHQR 701 (755)
Q Consensus 635 WDl~t~~-----------~v~~~~~~~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~-i~~~~~~~~~h~~ 701 (755)
||+...+ ...+..|...|..++-.|++ ..+.+++.||+|+-||++....-.... ............-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9997521 11344566788889999988 789999999999999998743221110 0000001112223
Q ss_pred CeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 702 KITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 702 ~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
...++..+|..+.+|++|+.|--.|+||
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhh
Confidence 4578889999998999999999999999
No 226
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.24 E-value=8.8e-10 Score=111.15 Aligned_cols=114 Identities=16% Similarity=0.371 Sum_probs=91.3
Q ss_pred CCCEEEEEecCC-cEEE--EEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC---CcEEEEECCCC
Q 004404 567 LDDVLDLSWSKS-QHLL--SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD---AKVRIWSIPER 640 (755)
Q Consensus 567 ~~~V~~L~~spd-~~La--Sgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D---gtVrIWDl~t~ 640 (755)
.++|.+++|+|+ ..|+ .|..++.|.|||++ ++.+..+. ...++.|.|+| +|++|++++.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 456999999998 4544 34567899999997 66666664 56789999999 99999998754 67999999988
Q ss_pred cEEEeccCCCCEEEEEEccCCCEEEEEEC------CCcEEEEECCCCeeee
Q 004404 641 QVVDWNDLHEMVTAACYTPDGQGALVGSY------KGSCHLYNTSENKLQQ 685 (755)
Q Consensus 641 ~~v~~~~~~~~VtsvafSPdG~~LasGs~------DG~I~lwDl~~~~~~~ 685 (755)
+.+....+. .++.++|+|+|++|+++.. |+.++||+.. |+++.
T Consensus 136 ~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 136 KKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred EEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 888766554 5789999999999999764 7889999986 44444
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.2e-09 Score=115.46 Aligned_cols=219 Identities=10% Similarity=0.194 Sum_probs=158.0
Q ss_pred CCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCC-EEEEEECC--CcEEEEeCcCCceeeeeec
Q 004404 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGED--CVIHVWQVVESERKGELLE 496 (755)
Q Consensus 420 s~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~-~LaTgs~D--GtVrVWdl~t~~~~~~l~~ 496 (755)
....++.+..+|.+.+|....+++... +...+.-| ..+..|.-++.-. .+|+||.. ..++|||++..+++.+-
T Consensus 114 ~dg~Litc~~sG~l~~~~~k~~d~hss-~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~a-- 189 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHDKSGDLHSS-KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSA-- 189 (412)
T ss_pred cCCEEEEEecCCcEEEEeccCCccccc-cceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeec--
Confidence 344567778899999999886664311 11223333 4566777777444 56669988 88999999776433221
Q ss_pred ccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec
Q 004404 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
..-|+ +.....-.+ .++++.|-
T Consensus 190 -------------KNvpn-----------------------------D~L~LrVPv----------------W~tdi~Fl 211 (412)
T KOG3881|consen 190 -------------KNVPN-----------------------------DRLGLRVPV----------------WITDIRFL 211 (412)
T ss_pred -------------cCCCC-----------------------------ccccceeee----------------eeccceec
Confidence 00000 000000012 25667776
Q ss_pred CC---cEEEEEeCCCcEEEEECCCC-cEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE--eccCC
Q 004404 577 KS---QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WNDLH 649 (755)
Q Consensus 577 pd---~~LaSgs~DgtVrLWDl~t~-~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~--~~~~~ 649 (755)
+. ..|++++.-+.||+||.+.+ +++..|. ...+|+++...| .++++++|..-+.+..||++.+++.. +.+..
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCcc
Confidence 54 67999999999999999875 5677776 788999999999 99999999999999999999998773 55667
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccC
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd 711 (755)
+.|.++..+|.+++|++++-|..+||||+.+.+++...- -...++.|.+.++
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY----------vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY----------VKSRLTFILLRDD 342 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh----------hhccccEEEecCC
Confidence 899999999999999999999999999999977776432 2344666666543
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.19 E-value=6.6e-09 Score=115.02 Aligned_cols=283 Identities=12% Similarity=0.050 Sum_probs=161.4
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEE-CCCcEEEEeCcCCceeeeeec
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs-~DGtVrVWdl~t~~~~~~l~~ 496 (755)
.|+.. ++....++.|.++|+.+.+... +++.- ..-.++++++||++++++. ..+.|.|+|.++.+.+..+..
T Consensus 46 ~Dgr~-~yv~~rdg~vsviD~~~~~~v~-----~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 46 PDGRY-LYVANRDGTVSVIDLATGKVVA-----TIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp T-SSE-EEEEETTSEEEEEETTSSSEEE-----EEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred CCCCE-EEEEcCCCeEEEEECCcccEEE-----EEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 34443 4555678999999998777443 33333 3467899999999988775 589999999999988887753
Q ss_pred ccccC--ccccEEEeecCCCCceeccc-cCCCceeeecccccccccccccCcccccceeeecCCCce-EEeccCCCCEEE
Q 004404 497 KQEDG--HLNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI-CSFQGHLDDVLD 572 (755)
Q Consensus 497 ~~~~~--~~~~v~~v~~s~dg~~l~~~-s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i-~~l~gH~~~V~~ 572 (755)
..... ....+..+..++....++.. ...+.+..... ...+++ .....-.....+
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy----------------------~d~~~~~~~~i~~g~~~~D 176 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY----------------------SDPKNLKVTTIKVGRFPHD 176 (369)
T ss_dssp -EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET----------------------TTSSCEEEEEEE--TTEEE
T ss_pred ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe----------------------ccccccceeeecccccccc
Confidence 22111 22333444445554433322 22222211110 011111 122223345778
Q ss_pred EEecCC-cEEEE-EeCCCcEEEEECCCCcEEEEee-----cCCceEEEEEeeC---------CCcEEEEEECCCcEEEEE
Q 004404 573 LSWSKS-QHLLS-SSMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPV---------DDRYFISGSLDAKVRIWS 636 (755)
Q Consensus 573 L~~spd-~~LaS-gs~DgtVrLWDl~t~~~~~~~~-----h~~~VtsVafsP~---------dg~~LaSgS~DgtVrIWD 636 (755)
..|.|+ .+++. ......|-++|..+++.+..+. |..++..+ .+|. .+...++.-....+.+||
T Consensus 177 ~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d 255 (369)
T PF02239_consen 177 GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHD 255 (369)
T ss_dssp EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred cccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccch
Confidence 899998 45544 4567899999999988877663 44444443 2331 122222333334566788
Q ss_pred CCCCcEEEeccCCCCEEEEEEccCCCEEEEE----ECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 637 IPERQVVDWNDLHEMVTAACYTPDGQGALVG----SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 637 l~t~~~v~~~~~~~~VtsvafSPdG~~LasG----s~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
..+.++++.....+.-.-+..+|++++|++. ...+.|.++|.++.+....+.. .....+..+.|+++|
T Consensus 256 ~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~--------~~~~~~~h~ef~~dG 327 (369)
T PF02239_consen 256 DYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP--------GPGKRVVHMEFNPDG 327 (369)
T ss_dssp TTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH--------HHT--EEEEEE-TTS
T ss_pred hhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec--------cCCCcEeccEECCCC
Confidence 8899988777766655888999999999998 4458899999999877665431 223459999999999
Q ss_pred CeEEEEEECCC-cEEEEE--CCcceEEee
Q 004404 713 SSEVLVTSADS-RIRVVD--GIDLVHKFK 738 (755)
Q Consensus 713 ~~~L~sgs~Dg-~IrVWD--~~~ll~~~~ 738 (755)
+...++.-..+ .|.||| +.+++++++
T Consensus 328 ~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 328 KEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp SEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 95555554444 899999 577777777
No 229
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=2.2e-10 Score=120.18 Aligned_cols=162 Identities=16% Similarity=0.238 Sum_probs=136.6
Q ss_pred EEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECC------CCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCc
Q 004404 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS------SKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAK 631 (755)
Q Consensus 561 ~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~------t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~Dgt 631 (755)
+.+.+|.+-|++|.|+.+ ..|++|+.|..++||.+. +.+++...+ |...|.|++|+. .+.++++|..+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcce
Confidence 346789999999999987 779999999999999985 356777776 668999999998 8899999999999
Q ss_pred EEEEECCCCcEEEeccCCC---CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEE
Q 004404 632 VRIWSIPERQVVDWNDLHE---MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (755)
Q Consensus 632 VrIWDl~t~~~v~~~~~~~---~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (755)
|.+.|+.+.+.+....+.. .|+.+..+|-.+.|++.+.++.|.+||.+.......... ..........+.|
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~------~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL------PANSGKNFYTAEF 202 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee------ecCCCccceeeee
Confidence 9999999999887777665 899999999999999999999999999987663222110 1133456778899
Q ss_pred ccCCCeEEEEEECCCcEEEEE
Q 004404 709 APGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 709 sPdg~~~L~sgs~Dg~IrVWD 729 (755)
+|..+.+|++++..+-+-|||
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D 223 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFD 223 (609)
T ss_pred cCCCceeEEeccccCCCCcee
Confidence 999988899999999999999
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.18 E-value=6e-09 Score=107.74 Aligned_cols=164 Identities=13% Similarity=0.238 Sum_probs=124.1
Q ss_pred ecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECC-CCcEEEEee---cCCceEEEEEeeCCCcEEEE-EEC
Q 004404 554 ALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS-SKTCLKIFS---HSDYVTCIQFNPVDDRYFIS-GSL 628 (755)
Q Consensus 554 ~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~-t~~~~~~~~---h~~~VtsVafsP~dg~~LaS-gS~ 628 (755)
+...+++.++. ...+|.++.+.++..+++ ....|+||... ..+.++.+. ....+.+++-+. +..+|+. |-.
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k 157 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFK 157 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCc
Confidence 44566666665 557899999987654433 35789999988 456666664 233444444332 3334443 455
Q ss_pred CCcEEEEECCCCcE---EEeccCCCCEEEEEEccCCCEEEEEECCCc-EEEEECCCCeeeeccccccccccccCCCCCeE
Q 004404 629 DAKVRIWSIPERQV---VDWNDLHEMVTAACYTPDGQGALVGSYKGS-CHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (755)
Q Consensus 629 DgtVrIWDl~t~~~---v~~~~~~~~VtsvafSPdG~~LasGs~DG~-I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (755)
-|.|+|-|+...+. .....|...|.+++++-+|..+|+++..|+ |||||..++.++.++. .......|.
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R-------RG~d~A~iy 230 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR-------RGVDRADIY 230 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee-------cCCchheEE
Confidence 69999999977655 677789999999999999999999999998 7999999999988643 223456799
Q ss_pred EEEEccCCCeEEEEEECCCcEEEEE
Q 004404 705 GFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 705 sl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+++|+|+.. +|+++|+-|+|.|+.
T Consensus 231 ~iaFSp~~s-~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 231 CIAFSPNSS-WLAVSSDKGTLHIFS 254 (346)
T ss_pred EEEeCCCcc-EEEEEcCCCeEEEEE
Confidence 999999997 899999999999997
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=3e-09 Score=116.83 Aligned_cols=269 Identities=14% Similarity=0.132 Sum_probs=179.0
Q ss_pred CceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccC--CEEEEEEcCCCCEEEEEECCCcEEEEeCcC
Q 004404 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG--SIWSIKFSLDGRYLASAGEDCVIHVWQVVE 487 (755)
Q Consensus 410 ~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~--~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t 487 (755)
....+.+++|++.++++|...-.|++||+..-.+ .|.-|.+ .|.-+-++.|-..++---.|.+|-+...-.
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEccccee-------eeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 4456778899999999999999999999863222 2344543 344444455555555556777776654311
Q ss_pred CceeeeeecccccCccccEEEeecC-CCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccC
Q 004404 488 SERKGELLEKQEDGHLNMLLLANGS-PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566 (755)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~v~~v~~s-~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH 566 (755)
......++ .....+..+ +...++..+...... .+.--.++-+..|...
T Consensus 126 ~hy~~RIP--------~~GRDm~y~~~scDly~~gsg~evY-----------------------RlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 126 RHYRTRIP--------KFGRDMKYHKPSCDLYLVGSGSEVY-----------------------RLNLEQGRFLNPFETD 174 (703)
T ss_pred eeeeeecC--------cCCccccccCCCccEEEeecCcceE-----------------------EEEccccccccccccc
Confidence 11111110 000011110 111111111111100 1111245556667777
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-------cCC-----ceEEEEEeeCCCcEEEEEECCCcEE
Q 004404 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-------HSD-----YVTCIQFNPVDDRYFISGSLDAKVR 633 (755)
Q Consensus 567 ~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-------h~~-----~VtsVafsP~dg~~LaSgS~DgtVr 633 (755)
.+.++++..++- ++|++|+.+|.|..||.++...+.++. |.+ .|+++.|+. +|-.+++|+.+|.|.
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~ 253 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVL 253 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEE
Confidence 789999999986 889999999999999999877666664 222 399999997 799999999999999
Q ss_pred EEECCCCcEEEeccCC--CCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEcc
Q 004404 634 IWSIPERQVVDWNDLH--EMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (755)
Q Consensus 634 IWDl~t~~~v~~~~~~--~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsP 710 (755)
|||+++.+++....|. -+|..+.|.+.+ +-.++......++|||-.+|+....+. ....++.+++.|
T Consensus 254 iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE----------pt~~lND~C~~p 323 (703)
T KOG2321|consen 254 IYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE----------PTSDLNDFCFVP 323 (703)
T ss_pred EEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc----------ccCCcCceeeec
Confidence 9999999988776665 478999998753 233333446678999999998877543 345599999999
Q ss_pred CCCeEEEEEECCCcEEEE
Q 004404 711 GSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 711 dg~~~L~sgs~Dg~IrVW 728 (755)
++. +++++-.+..+..|
T Consensus 324 ~sG-m~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 324 GSG-MFFTANESSKMHTY 340 (703)
T ss_pred CCc-eEEEecCCCcceeE
Confidence 887 88888888777655
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.14 E-value=2.7e-09 Score=109.17 Aligned_cols=274 Identities=16% Similarity=0.151 Sum_probs=183.0
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC---CCC-EEEEEECCCcEEEEeCcCCceeeeeecccccCc-c
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL---DGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGH-L 503 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp---dg~-~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~-~ 503 (755)
.-|++.+|+....++.++..+|. --+..+..|.|.. +|. .|+-+-.+|.|.++.....+....+........ .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~--~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~ 121 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQC--TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISV 121 (339)
T ss_pred eccceEEEeecccccCccceeee--ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhh
Confidence 45778888887777666443332 2345688888864 555 677778889999998766554444321111111 1
Q ss_pred ccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEE
Q 004404 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHL 581 (755)
Q Consensus 504 ~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~L 581 (755)
....++.+++.++.+++....+.+.... .....-+.++.++.|.-+++-..|+.. +.+
T Consensus 122 ~~~lslD~~~~~~~i~vs~s~G~~~~v~--------------------~t~~~le~vq~wk~He~E~Wta~f~~~~pnlv 181 (339)
T KOG0280|consen 122 VEALSLDISTSGTKIFVSDSRGSISGVY--------------------ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLV 181 (339)
T ss_pred eeeeEEEeeccCceEEEEcCCCcEEEEe--------------------cceeeeeecccccccceeeeeeecccCCCceE
Confidence 1355677777777766665555442100 000111345578899999999999865 789
Q ss_pred EEEeCCCcEEEEECC-CCcEEEEe--ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECC-CCcEEEeccCCCCEEEEEE
Q 004404 582 LSSSMDKTVRLWHLS-SKTCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-ERQVVDWNDLHEMVTAACY 657 (755)
Q Consensus 582 aSgs~DgtVrLWDl~-t~~~~~~~--~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~-t~~~v~~~~~~~~Vtsvaf 657 (755)
.+|+.|+.+.-||++ .++.+..- .|...|.+|.-+|..+.+|++|+.|..|++||.+ -++++.-....+.|+.+.+
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~ 261 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKH 261 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEe
Confidence 999999999999999 34444432 2999999999998778899999999999999998 4777766677789999999
Q ss_pred ccCC-CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE-ECCCcEE-EEE
Q 004404 658 TPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRIR-VVD 729 (755)
Q Consensus 658 SPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg-s~Dg~Ir-VWD 729 (755)
+|.- ..|++++.-.-.+|-+...+... +++.+ ...+.|..-+.+-.|..... +|+++ ..|+.|+ +|-
T Consensus 262 ~p~~~~~lL~~CMh~G~ki~~~~~~~~e--~~~~~--~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 262 HPEIFHRLLAACMHNGAKILDSSDKVLE--FQIVL--PSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWL 331 (339)
T ss_pred cchhhhHHHHHHHhcCceEEEecccccc--hheee--eccccccceeeccccccccc-eeeeeeccccceeeeee
Confidence 9943 23333444445677777766554 22111 23457877777777844432 67776 4577755 775
No 233
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.4e-09 Score=120.26 Aligned_cols=139 Identities=18% Similarity=0.211 Sum_probs=120.4
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEee---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEE
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTA 654 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~Vts 654 (755)
..++-|...|.|.+|++..++....+. |.+.|+++.++. +-..|.+++.|+.+..|+...++.+ .+...+..+.+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 467888889999999999999888885 999999999998 8889999999999999999998877 45566678999
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccC-----CCeEEEEEECCCcEEEEE
Q 004404 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG-----SSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 655 vafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd-----g~~~L~sgs~Dg~IrVWD 729 (755)
++++|||..|++++ +.|++||+++.+.+.+++ +|.++|..++|.-. |..+|.+...+.-|.+|-
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~ft---------gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKEVVITFT---------GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCceEEEEec---------CCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 99999999999986 689999999999998765 99999999999876 664555556677777774
No 234
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=9e-09 Score=116.58 Aligned_cols=210 Identities=14% Similarity=0.131 Sum_probs=133.4
Q ss_pred eeeeecCCCcEEEEe--CCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEE-ECCC--cEEEEeCcC
Q 004404 413 SSSATDDSQDVSFHG--QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDC--VIHVWQVVE 487 (755)
Q Consensus 413 ~vs~~~ds~~~l~sg--~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTg-s~DG--tVrVWdl~t 487 (755)
....++|++.+++.. ..+..|++|++..++...+. .+.+| +..++|+|||++|+.. +.+| .|.+||+.+
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~---~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA---SFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc---CCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 344556666665543 33567889998766543222 23333 4568999999988754 4455 477777754
Q ss_pred CceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCC
Q 004404 488 SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567 (755)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~ 567 (755)
++.. .+..+.
T Consensus 277 g~~~----------------------------------------------------------------------~lt~~~ 286 (429)
T PRK03629 277 GQIR----------------------------------------------------------------------QVTDGR 286 (429)
T ss_pred CCEE----------------------------------------------------------------------EccCCC
Confidence 4311 111122
Q ss_pred CCEEEEEecCC-cEEEEEeC-CCc--EEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC---CcEEEEECCCC
Q 004404 568 DDVLDLSWSKS-QHLLSSSM-DKT--VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD---AKVRIWSIPER 640 (755)
Q Consensus 568 ~~V~~L~~spd-~~LaSgs~-Dgt--VrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D---gtVrIWDl~t~ 640 (755)
..+....|+|+ ..|+..+. ++. |+++++.+++..+...+........|+| ++++|+..+.+ ..|.+||+.++
T Consensus 287 ~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCC
Confidence 23566789998 45655554 344 5555776665544433455567889999 99988876654 35888999988
Q ss_pred cEEEeccCCCCEEEEEEccCCCEEEEEECCCc---EEEEECCCCeeeeccccccccccccCCCCCeEEEEEcc
Q 004404 641 QVVDWNDLHEMVTAACYTPDGQGALVGSYKGS---CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (755)
Q Consensus 641 ~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~---I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsP 710 (755)
+...+... .......|+|||++|+.++.++. ++++++....... +..|.+.+...+|+|
T Consensus 366 ~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~----------l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 366 GVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR----------LPATDGQVKFPAWSP 427 (429)
T ss_pred CeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEE----------CccCCCCcCCcccCC
Confidence 76655432 23456889999999999887764 6777875443332 225777888889987
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.12 E-value=4.8e-08 Score=101.20 Aligned_cols=177 Identities=14% Similarity=0.170 Sum_probs=118.3
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCc-CCceeeeeecccccCccccEEE
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLL 508 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~-t~~~~~~l~~~~~~~~~~~v~~ 508 (755)
-.+|.|||-.... ++.++. ...+|.+|.+.++ .|+.. ..+.|.||... ..+.+..+.... .+..+.+
T Consensus 74 pNkviIWDD~k~~-----~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~---NPkGlC~ 141 (346)
T KOG2111|consen 74 PNKVIIWDDLKER-----CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRS---NPKGLCS 141 (346)
T ss_pred CceEEEEecccCc-----EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeeccc---CCCceEe
Confidence 3678999843222 223332 5689999999876 45555 35789999987 444444442111 1122333
Q ss_pred eecCCCCceecc-ccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeC
Q 004404 509 ANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM 586 (755)
Q Consensus 509 v~~s~dg~~l~~-~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~ 586 (755)
+.-..+..+|+. +...+.+.+..... ....+...+.+|..+|.|++.+-+ .++|++|.
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~--------------------~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt 201 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLAS--------------------TKPNAPSIINAHDSDIACVALNLQGTLVATAST 201 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhh--------------------cCcCCceEEEcccCceeEEEEcCCccEEEEecc
Confidence 333333333332 22223332111110 011134678899999999999988 56889999
Q ss_pred CCc-EEEEECCCCcEEEEee---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC
Q 004404 587 DKT-VRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (755)
Q Consensus 587 Dgt-VrLWDl~t~~~~~~~~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t 639 (755)
.|| |||||..+|+.++.+. ....|.||+|+| +..+|+++|..|+|+||.++.
T Consensus 202 kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 202 KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 887 8999999999999996 567899999999 999999999999999998865
No 236
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=3.8e-09 Score=110.57 Aligned_cols=147 Identities=16% Similarity=0.288 Sum_probs=109.1
Q ss_pred CCEEEEEecCC--cEEEEEeCCCcEEEEECCC----C--------cEEEEee--cCCceEEEEEeeCCCcEEEEEEC-CC
Q 004404 568 DDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS----K--------TCLKIFS--HSDYVTCIQFNPVDDRYFISGSL-DA 630 (755)
Q Consensus 568 ~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t----~--------~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~-Dg 630 (755)
..|+||+|-|. ..|+.|+. +-|.+|.... . .+.+.+. ...+|++++|++ |+..+++++. |.
T Consensus 141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~l~tAS~gss 218 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTILVTASFGSS 218 (445)
T ss_pred cceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCEEeecccCcc
Confidence 46899999996 55777776 4599997652 1 1223343 336899999999 8999998876 56
Q ss_pred cEEEEECCCCcEEEec-cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEc
Q 004404 631 KVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (755)
Q Consensus 631 tVrIWDl~t~~~v~~~-~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (755)
.|+|||..+++.+.+. ...+.++-+.|||||.+|++++-|+..++|+.....-..... -..+.|....|+
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~---------lgsgrvqtacWs 289 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI---------LGSGRVQTACWS 289 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee---------ccCCceeeeeec
Confidence 7999999999887665 445678899999999999999999999999654332222111 234589999999
Q ss_pred cCCCeEEEEEECCCcE
Q 004404 710 PGSSSEVLVTSADSRI 725 (755)
Q Consensus 710 Pdg~~~L~sgs~Dg~I 725 (755)
|.|+.+|++.+..-.|
T Consensus 290 pcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 290 PCGSFLLFACSGSPRL 305 (445)
T ss_pred CCCCEEEEEEcCCceE
Confidence 9999666666655444
No 237
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.09 E-value=1.9e-10 Score=123.42 Aligned_cols=189 Identities=13% Similarity=0.158 Sum_probs=150.0
Q ss_pred EeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCC
Q 004404 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMD 587 (755)
Q Consensus 508 ~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~D 587 (755)
.+.++.+|..++.+...+++.... -.+.+...++.- ...|.++.|..+..+++....
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~D----------------------w~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK 190 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFD----------------------WVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK 190 (545)
T ss_pred eeeecCCccEEEecCCccceeeee----------------------cccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh
Confidence 456677777777777777663111 112233333332 345888999888556666677
Q ss_pred CcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEE
Q 004404 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALV 666 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~Las 666 (755)
+.++||| ..|..++.+.....|..+.|.| ..-+|++++..|.++.-|+.+|+++. +....+.+..|+-.|-...+-+
T Consensus 191 ~y~yvYD-~~GtElHClk~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~ 268 (545)
T KOG1272|consen 191 KYVYVYD-NNGTELHCLKRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHL 268 (545)
T ss_pred ceEEEec-CCCcEEeehhhcCchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEE
Confidence 8999999 5588888888888999999999 88889999999999999999999884 4455678889999998889999
Q ss_pred EECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECC
Q 004404 667 GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (755)
Q Consensus 667 Gs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~ 731 (755)
|...|+|.+|.......+..+ ..|.++|.+|++.++|. ++++++.|..|+|||..
T Consensus 269 GhsnGtVSlWSP~skePLvKi---------LcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEPLVKI---------LCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLR 323 (545)
T ss_pred cCCCceEEecCCCCcchHHHH---------HhcCCCcceEEECCCCc-EEeecccccceeEeeec
Confidence 999999999999887766543 38999999999999998 89999999999999943
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=8.2e-09 Score=107.52 Aligned_cols=274 Identities=18% Similarity=0.261 Sum_probs=170.6
Q ss_pred CCCcEEEEeCCCcEEEEeeCCCCcccceeee-eEeecc------------cCCEEEEEEcCCCC--EEEEEECCCcEEEE
Q 004404 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKC-QEIQAH------------NGSIWSIKFSLDGR--YLASAGEDCVIHVW 483 (755)
Q Consensus 419 ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~-q~l~gH------------~~~I~sI~fSpdg~--~LaTgs~DGtVrVW 483 (755)
.....|++|..+|+|-+|....... ..+.. .+++.| ...|..|.|.+++. .++..+.|.+|++|
T Consensus 35 ~~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlW 113 (433)
T KOG1354|consen 35 HYGERLATGDKGGRVVLFEREKLYK-GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLW 113 (433)
T ss_pred cccceEeecCCCCeEEEeecccccc-cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeee
Confidence 3446689999999999997653322 12222 234455 35799999998664 67777899999999
Q ss_pred eCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEe
Q 004404 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF 563 (755)
Q Consensus 484 dl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l 563 (755)
.+.......+-......+....+..+ .+......+ .+ ....|.+.+
T Consensus 114 Ki~er~~k~~~~~~~~~~~~~~~~~l------r~p~~~~~~--------------------------~~--vea~prRv~ 159 (433)
T KOG1354|consen 114 KIRERGSKKEGYNLPEEGPPGTITSL------RLPVEGRHD--------------------------LE--VEASPRRVY 159 (433)
T ss_pred eeeccccccccccccccCCCCcccee------eceeecccc--------------------------ce--eeeeeeeec
Confidence 98654433211000000100000000 000000000 00 011223333
Q ss_pred -ccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCC-CcEEEEee--------cCCceEEEEEeeCCCcEEEEEECCCcEE
Q 004404 564 -QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFS--------HSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (755)
Q Consensus 564 -~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t-~~~~~~~~--------h~~~VtsVafsP~dg~~LaSgS~DgtVr 633 (755)
.+|.--|++|.++.++..+.+..|=.|-||++.- .++..... .+.-|++..|+|...+.|+-.+..|+|+
T Consensus 160 aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred cccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 4688889999999997666667788999999863 33333222 2346899999997788899899999999
Q ss_pred EEECCCCcEE----Eecc-------------CCCCEEEEEEccCCCEEEEEECCCcEEEEEC-CCCeeeecccccccccc
Q 004404 634 IWSIPERQVV----DWND-------------LHEMVTAACYTPDGQGALVGSYKGSCHLYNT-SENKLQQKSPINLQNKK 695 (755)
Q Consensus 634 IWDl~t~~~v----~~~~-------------~~~~VtsvafSPdG~~LasGs~DG~I~lwDl-~~~~~~~~~~i~~~~~~ 695 (755)
+-|++...+. .++. .-..|..+.|+++|+|+++-.. -+|++||+ ...+.+.++++....+.
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH
Confidence 9999854332 1111 1146889999999999998653 58999999 45555555543221111
Q ss_pred c---cCCCCCe---EEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 696 K---RSHQRKI---TGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 696 ~---~~h~~~V---tsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
. ......| ..+.|+.++. ++++|+....+++|+
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEec
Confidence 0 0112223 4577888877 899999999999999
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=1.7e-08 Score=114.50 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=122.2
Q ss_pred eeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeC---CCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEE-EE
Q 004404 552 VFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM---DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SG 626 (755)
Q Consensus 552 v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~---DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~La-Sg 626 (755)
+++..+.....+..|...+...+|+|+ ..|+..+. +..|++||+.+++......+.+.+....|+| |++.|+ +.
T Consensus 186 ~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~ 264 (435)
T PRK05137 186 IMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSL 264 (435)
T ss_pred EECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEE
Confidence 344456666777888889999999999 55666553 4689999999887765555777788999999 887765 55
Q ss_pred ECCCc--EEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEEC-CC--cEEEEECCCCeeeeccccccccccccCCCC
Q 004404 627 SLDAK--VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (755)
Q Consensus 627 S~Dgt--VrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~-DG--~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (755)
+.++. |.+||+.++....+..+.......+|+|||+.|+..+. +| .|++||+.++...... .+..
T Consensus 265 ~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt----------~~~~ 334 (435)
T PRK05137 265 SQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS----------FGGG 334 (435)
T ss_pred ecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee----------cCCC
Confidence 66655 77779999888777766667788999999999888764 33 5888898776544321 2234
Q ss_pred CeEEEEEccCCCeEEEEEECC---CcEEEEE
Q 004404 702 KITGFQFAPGSSSEVLVTSAD---SRIRVVD 729 (755)
Q Consensus 702 ~Vtsl~fsPdg~~~L~sgs~D---g~IrVWD 729 (755)
.+....|+|+|+ +|+....+ ..|.+||
T Consensus 335 ~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d 364 (435)
T PRK05137 335 RYSTPVWSPRGD-LIAFTKQGGGQFSIGVMK 364 (435)
T ss_pred cccCeEECCCCC-EEEEEEcCCCceEEEEEE
Confidence 566788999998 56555433 3688888
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=8e-08 Score=105.96 Aligned_cols=299 Identities=19% Similarity=0.265 Sum_probs=173.1
Q ss_pred EEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEE-----CC-----CcEEEEeCcCCceeeee
Q 004404 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-----ED-----CVIHVWQVVESERKGEL 494 (755)
Q Consensus 425 ~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs-----~D-----GtVrVWdl~t~~~~~~l 494 (755)
++-..+..|+|++..+.+. .. +. -...++++.|+|-|.||.|.- .+ ..+++|+++++.....+
T Consensus 49 fA~~~~~~v~i~~~~~~~~--~l-t~----~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~ 121 (566)
T KOG2315|consen 49 FAYSDNQVVKVFEIATLKV--VL-CV----ELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQI 121 (566)
T ss_pred EEEEcCCeEEEEEccCCcE--EE-Ee----ccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhhe
Confidence 4445566777777765541 11 11 112688999999999998852 22 35779999885544444
Q ss_pred ecccccCccccEEEeecCCCCceeccccCCCceeeec-----------ccccccccccccCccc--c----c--------
Q 004404 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR-----------RGRSINRKSLSLDHMV--V----P-------- 549 (755)
Q Consensus 495 ~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~-----------~~~~~~~~s~s~d~~~--~----~-------- 549 (755)
......+ ++..|+.|..+.+-.... .+.+.. ....+....++..... + +
T Consensus 122 q~k~Q~~-----W~~qfs~dEsl~arlv~n-ev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~ 195 (566)
T KOG2315|consen 122 QKKMQNG-----WVPQFSIDESLAARLVSN-EVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS 195 (566)
T ss_pred ehhhhcC-----cccccccchhhhhhhhcc-eEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence 3222111 355566554433322111 111111 1111111222221000 0 0
Q ss_pred ceeeecCCCceEEec----cCCCCEEEEEecCC--cEEEE--EeCCC---------cEEEEECCCCcEEEEeecCCceEE
Q 004404 550 ETVFALSDKPICSFQ----GHLDDVLDLSWSKS--QHLLS--SSMDK---------TVRLWHLSSKTCLKIFSHSDYVTC 612 (755)
Q Consensus 550 ~~v~~~s~k~i~~l~----gH~~~V~~L~~spd--~~LaS--gs~Dg---------tVrLWDl~t~~~~~~~~h~~~Vts 612 (755)
-+++.......+... -...+=..+.|++- ..|+. ..-|+ ++++.++....+...+...++|.+
T Consensus 196 vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhd 275 (566)
T KOG2315|consen 196 VRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHD 275 (566)
T ss_pred EEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceE
Confidence 012221111110000 01123345778764 34433 33344 688888886677777778999999
Q ss_pred EEEeeCCCcEEEE--EECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEEC---CCcEEEEECCCCeeeecc
Q 004404 613 IQFNPVDDRYFIS--GSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY---KGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 613 VafsP~dg~~LaS--gS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~---DG~I~lwDl~~~~~~~~~ 687 (755)
++|+| +++-|++ |-.=.++.|||++..-+..+ ..++-+++-|+|.|++|+.++- .|.|-|||+.+.+++..+
T Consensus 276 v~W~~-s~~EF~VvyGfMPAkvtifnlr~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 276 VTWSP-SGREFAVVYGFMPAKVTIFNLRGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EEECC-CCCEEEEEEecccceEEEEcCCCCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 99999 8876665 45567899999876544333 3567788999999999998664 588999999997777653
Q ss_pred ccccccccccCCCCCeEEEEEccCCCeEEEEEEC------CCcEEEEE-CCcceEEeecCCccEEEEEEEEE
Q 004404 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA------DSRIRVVD-GIDLVHKFKGENYVQYMVCIVLF 752 (755)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~------Dg~IrVWD-~~~ll~~~~GH~~~V~sv~fs~F 752 (755)
. ...-+-+.|+|+|+ +|++++. |+.++||+ +|.++....--. ..+.+++=||
T Consensus 353 ~-----------a~~tt~~eW~PdGe-~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 353 K-----------AANTTVFEWSPDGE-YFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred c-----------cCCceEEEEcCCCc-EEEEEeccccEEecCCeEEEEecCceeehhhhhH-hHhheeeeec
Confidence 2 23346678999999 6777643 88999999 676665433221 4444544443
No 241
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.05 E-value=9.8e-10 Score=132.88 Aligned_cols=198 Identities=17% Similarity=0.245 Sum_probs=155.1
Q ss_pred ecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecc
Q 004404 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (755)
Q Consensus 453 ~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~ 532 (755)
+.|-..|.+|.=+|...+.+||+.||.|++|....++.+..+.. .+. ..+....++..|........++.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt---~g~-s~vtr~~f~~qGnk~~i~d~dg~l----- 2275 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT---AGN-SRVTRSRFNHQGNKFGIVDGDGDL----- 2275 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec---cCc-chhhhhhhcccCCceeeeccCCce-----
Confidence 44667788888899889999999999999999988877666532 222 556667777777777777666666
Q ss_pred cccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEe---CCCcEEEEECCCC---cEEEEeec
Q 004404 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSS---MDKTVRLWHLSSK---TCLKIFSH 606 (755)
Q Consensus 533 ~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs---~DgtVrLWDl~t~---~~~~~~~h 606 (755)
.+|....++....+.|.....++.|-. ..+++++ .++.+.+||..-. .+++ ..|
T Consensus 2276 ------------------~l~q~~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H 2335 (2439)
T KOG1064|consen 2276 ------------------SLWQASPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCH 2335 (2439)
T ss_pred ------------------eecccCCcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceee-eec
Confidence 466667788888899999999998876 4455544 4789999996532 3344 349
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
.+.++++++-| ...+|++|+.+|.|++||++..+++..+.. +. ...++++|+..|.|+||++....++..
T Consensus 2336 ~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2336 DGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred CCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhc
Confidence 99999999999 899999999999999999998887644332 33 456899999999999999999888877
Q ss_pred ccc
Q 004404 687 SPI 689 (755)
Q Consensus 687 ~~i 689 (755)
++.
T Consensus 2406 ~p~ 2408 (2439)
T KOG1064|consen 2406 FPS 2408 (2439)
T ss_pred Cch
Confidence 653
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=3.4e-08 Score=111.87 Aligned_cols=211 Identities=14% Similarity=0.193 Sum_probs=129.7
Q ss_pred eeeecCCCcEEEEeC--CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEE-EEECCCcEEEEeCcCCce
Q 004404 414 SSATDDSQDVSFHGQ--ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESER 490 (755)
Q Consensus 414 vs~~~ds~~~l~sg~--~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~La-Tgs~DGtVrVWdl~t~~~ 490 (755)
...++|+..+++... ....|++|++.+++... +....+.+.+.+|+|||+.|+ +.+.+|...||.+.....
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 274 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS 274 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 344556655555443 34569999998775432 223445567899999999876 567788877776532100
Q ss_pred eeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCE
Q 004404 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570 (755)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V 570 (755)
.+..+..|...+
T Consensus 275 --------------------------------------------------------------------~~~~lt~~~~~~ 286 (427)
T PRK02889 275 --------------------------------------------------------------------GLRRLTQSSGID 286 (427)
T ss_pred --------------------------------------------------------------------CcEECCCCCCCC
Confidence 011112222334
Q ss_pred EEEEecCC-cEEEEEe-CCCcEEEEEC--CCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCC---cEEEEECCCCcEE
Q 004404 571 LDLSWSKS-QHLLSSS-MDKTVRLWHL--SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA---KVRIWSIPERQVV 643 (755)
Q Consensus 571 ~~L~~spd-~~LaSgs-~DgtVrLWDl--~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~Dg---tVrIWDl~t~~~v 643 (755)
....|+|+ .+|+..+ .++...||.+ ..+...............+|+| ++++|+..+.++ .|.+||+.+++..
T Consensus 287 ~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred cCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 55679998 4455444 3466666654 4444333332334455678999 999998877654 5999999988766
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEECCC---cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEcc
Q 004404 644 DWNDLHEMVTAACYTPDGQGALVGSYKG---SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (755)
Q Consensus 644 ~~~~~~~~VtsvafSPdG~~LasGs~DG---~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsP 710 (755)
.+... .......|+|||++|+..+.++ .+++.++. +.....+ ..+.+.+...+|+|
T Consensus 366 ~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l---------~~~~g~~~~p~wsp 424 (427)
T PRK02889 366 ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRL---------SVQGGDVREPSWGP 424 (427)
T ss_pred EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEe---------ecCCCCCCCCccCC
Confidence 55433 3456789999999988876544 35566663 3333221 23556677778877
No 243
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=2.7e-08 Score=112.88 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=118.2
Q ss_pred eeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEE-EE
Q 004404 552 VFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SG 626 (755)
Q Consensus 552 v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~D---gtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~La-Sg 626 (755)
+++..+...+.+..|...+...+|+|+ ..|+..+.+ ..|++||+.+++........+...++.|+| +++.|+ +.
T Consensus 188 i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~ 266 (433)
T PRK04922 188 VADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTL 266 (433)
T ss_pred EECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEE
Confidence 444556666667777888999999999 567766643 469999999887655544555666889999 887665 55
Q ss_pred ECCC--cEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEEC-CCc--EEEEECCCCeeeeccccccccccccCCCC
Q 004404 627 SLDA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KGS--CHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (755)
Q Consensus 627 S~Dg--tVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~-DG~--I~lwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (755)
+.++ .|++||+.+++...+..+.......+|+|||++|+..+. +|. |+++++.+++..... .+..
T Consensus 267 s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt----------~~g~ 336 (433)
T PRK04922 267 SRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT----------FQGN 336 (433)
T ss_pred eCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee----------cCCC
Confidence 5565 599999999887776666556678999999999888764 444 777787776543311 1223
Q ss_pred CeEEEEEccCCCeEEEEEECC-C--cEEEEE
Q 004404 702 KITGFQFAPGSSSEVLVTSAD-S--RIRVVD 729 (755)
Q Consensus 702 ~Vtsl~fsPdg~~~L~sgs~D-g--~IrVWD 729 (755)
....++|+|+|+ +|+..+.+ + .|.+||
T Consensus 337 ~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d 366 (433)
T PRK04922 337 YNARASVSPDGK-KIAMVHGSGGQYRIAVMD 366 (433)
T ss_pred CccCEEECCCCC-EEEEEECCCCceeEEEEE
Confidence 345689999998 56555433 2 689999
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.6e-07 Score=106.41 Aligned_cols=172 Identities=15% Similarity=0.113 Sum_probs=104.3
Q ss_pred EEEEecCCc-EEEEEeC-----CCcEEEEECCC---CcEEEEeec-CCceEEEEEeeCCCcEEEEEE-CCCcEEEE--EC
Q 004404 571 LDLSWSKSQ-HLLSSSM-----DKTVRLWHLSS---KTCLKIFSH-SDYVTCIQFNPVDDRYFISGS-LDAKVRIW--SI 637 (755)
Q Consensus 571 ~~L~~spd~-~LaSgs~-----DgtVrLWDl~t---~~~~~~~~h-~~~VtsVafsP~dg~~LaSgS-~DgtVrIW--Dl 637 (755)
...+|+|++ +|+..+. +..+.+|++.. +...+.... .......+|+| |++.|+..+ .+|...|| ++
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 345777773 4544332 22344467664 233333332 23456789999 998877766 46655555 44
Q ss_pred CC--CcEEEeccCCCCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 638 PE--RQVVDWNDLHEMVTAACYTPDGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 638 ~t--~~~v~~~~~~~~VtsvafSPdG~~LasGs~D---G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
.. +....+......+...+|+|||+.|+....+ ..|++||+.+++..... .....+....|+|+|
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt----------~~~~~~~~p~wSpDG 382 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT----------TSPENKESPSWAIDS 382 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc----------CCCCCccceEECCCC
Confidence 32 3334444444567889999999998876543 46999999988765421 122346678999999
Q ss_pred CeEEEEEEC--CCcEEEEEC-CcceEEeecCCccEEEEEEEEEE
Q 004404 713 SSEVLVTSA--DSRIRVVDG-IDLVHKFKGENYVQYMVCIVLFF 753 (755)
Q Consensus 713 ~~~L~sgs~--Dg~IrVWD~-~~ll~~~~GH~~~V~sv~fs~F~ 753 (755)
+.+++++.. ...|.+||. +.....+......+...+++||+
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 844444433 356888883 22333344344456677777765
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=9.7e-09 Score=119.88 Aligned_cols=201 Identities=17% Similarity=0.247 Sum_probs=145.4
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccccc
Q 004404 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~ 535 (755)
.+.|..-.+.-+.+.++.+..+..+-+||........+++... ............+++...++++..-+.+..|...
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e-r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~-- 163 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE-RCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH-- 163 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCc-eEEEEeEEEEeccCcEEEEEeccccccEEEEecc--
Confidence 3445556666678889999999999999997766555542111 1111222233444555555555444433222211
Q ss_pred ccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEE--EeecCCceEE
Q 004404 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK--IFSHSDYVTC 612 (755)
Q Consensus 536 ~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~--~~~h~~~Vts 612 (755)
...+++ .+.||.+.|..+.|+.+ .++++.|+|.++|+|++.+.+... -|+|+..|..
T Consensus 164 -------------------~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 164 -------------------EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred -------------------ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 122333 68899999999999988 789999999999999999876654 5679999999
Q ss_pred EEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC-CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe
Q 004404 613 IQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (755)
Q Consensus 613 VafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~-~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~ 682 (755)
++|.| + ++++++.|.+.++|+....++.....|. ..+..++..++...+++++.|+.+++|++....
T Consensus 224 ~~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 224 CCFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEecc-c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 99998 4 9999999999999976655544333343 479999999999999999999999999986543
No 246
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.95 E-value=3.2e-08 Score=102.53 Aligned_cols=259 Identities=14% Similarity=0.126 Sum_probs=172.6
Q ss_pred CceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeC---c
Q 004404 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV---V 486 (755)
Q Consensus 410 ~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl---~ 486 (755)
+...+..++++..++....-+-+|.+|.+.++.... ++.-+..+..++|+|||++.+.++.--..-..++ .
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~------~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL------LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEeccceeEE------ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 445677788888889999999999999988665432 2223456789999999999998876321111111 1
Q ss_pred CCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccC
Q 004404 487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566 (755)
Q Consensus 487 t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH 566 (755)
.-+.+.++ ....-....+.|+|||..++.=. ..++ -.+..+. -
T Consensus 167 ~W~ll~~f-----~~dT~DltgieWsPdg~~laVwd--~~Le-----------------------------ykv~aYe-~ 209 (447)
T KOG4497|consen 167 AWILLKEF-----KLDTIDLTGIEWSPDGNWLAVWD--NVLE-----------------------------YKVYAYE-R 209 (447)
T ss_pred HHHHHHhc-----CCCcccccCceECCCCcEEEEec--chhh-----------------------------heeeeee-e
Confidence 11111221 22233445678899988776521 1110 0011111 1
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcE---------------------------------------------
Q 004404 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC--------------------------------------------- 600 (755)
Q Consensus 567 ~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~--------------------------------------------- 600 (755)
.-.+..+.|+|. +.|+.|+.|+.+|+.+--+.+.
T Consensus 210 ~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~ 289 (447)
T KOG4497|consen 210 GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIW 289 (447)
T ss_pred ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcc
Confidence 245888999994 8899999999988765211100
Q ss_pred ---------------EEEee-------cCCceEEEEEeeCCCcEEEEEECC--CcEEEEECCCCcEEEeccCCCCEEEEE
Q 004404 601 ---------------LKIFS-------HSDYVTCIQFNPVDDRYFISGSLD--AKVRIWSIPERQVVDWNDLHEMVTAAC 656 (755)
Q Consensus 601 ---------------~~~~~-------h~~~VtsVafsP~dg~~LaSgS~D--gtVrIWDl~t~~~v~~~~~~~~Vtsva 656 (755)
+++++ ..-.+.-++|++ |..++++-... ..+.+||++..++........+|.+..
T Consensus 290 ~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~ 368 (447)
T KOG4497|consen 290 EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFE 368 (447)
T ss_pred ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEE
Confidence 01111 112366788999 87777765432 458999999988877777788999999
Q ss_pred EccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC
Q 004404 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (755)
Q Consensus 657 fSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg 723 (755)
|.|....|++......+++|-......+... ...-.|..++|.-.|. .++..+.|.
T Consensus 369 WdP~~prL~vctg~srLY~W~psg~~~V~vP----------~~GF~i~~l~W~~~g~-~i~l~~kDa 424 (447)
T KOG4497|consen 369 WDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP----------KKGFNIQKLQWLQPGE-FIVLCGKDA 424 (447)
T ss_pred eCCCCceEEEEcCCceEEEEcCCCceEEecC----------CCCceeeeEEecCCCc-EEEEEcCCc
Confidence 9999999999888889999999886655431 2236799999999998 677777775
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=6.7e-08 Score=108.29 Aligned_cols=290 Identities=14% Similarity=0.196 Sum_probs=192.5
Q ss_pred CcEEEEeCCCcEEEEeeCCCCc----------ccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCce
Q 004404 421 QDVSFHGQERVRVRQYGKSCKD----------LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~----------~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~ 490 (755)
..+++.|..+|.+++..+.+.. ...+.+.|+|.||.+.|.-+.|+.+.+.|-|...+|.|.||-+-.+.-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW 105 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW 105 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccH
Confidence 4567889999999988765422 234556689999999999999999999999999999999999877654
Q ss_pred eeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCE
Q 004404 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570 (755)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V 570 (755)
..+.. .......+.++.|..+|+.+.....++.+....... .++|.- .+++. -.
T Consensus 106 ~EEMi---NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG---------------NRIwgK------eLkg~--~l 159 (1189)
T KOG2041|consen 106 CEEMI---NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG---------------NRIWGK------ELKGQ--LL 159 (1189)
T ss_pred HHHHh---hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc---------------ceecch------hcchh--ec
Confidence 43332 355667888999999999988887777663222111 122221 11111 13
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEECCCC-------cEEEEe-e----cCCceEEEEEee-------CCCcEEEEEECCC
Q 004404 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSK-------TCLKIF-S----HSDYVTCIQFNP-------VDDRYFISGSLDA 630 (755)
Q Consensus 571 ~~L~~spd-~~LaSgs~DgtVrLWDl~t~-------~~~~~~-~----h~~~VtsVafsP-------~dg~~LaSgS~Dg 630 (755)
..+.|+++ ..++.+-..|.+.|+|.... .|.... + ....|..+.|.. -+...|+.+-..|
T Consensus 160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG 239 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG 239 (1189)
T ss_pred cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence 36789998 55667777899999997632 221111 1 233466677652 1567899999999
Q ss_pred cEEEEECCC-CcEEEeccCCCCEEEEEEccCCCEEEEEECC---------CcEEEEECCCCeeeeccccccccccccCCC
Q 004404 631 KVRIWSIPE-RQVVDWNDLHEMVTAACYTPDGQGALVGSYK---------GSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (755)
Q Consensus 631 tVrIWDl~t-~~~v~~~~~~~~VtsvafSPdG~~LasGs~D---------G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (755)
.+.|-.-.+ ..++ .....-.+..+.|+++|..|++++.+ +.|++|..- |+...+ ++...
T Consensus 240 r~QiMR~eND~~Pv-v~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gt---------lkvpg 308 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPV-VVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGT---------LKVPG 308 (1189)
T ss_pred eehhhhhcCCCCCe-EEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEE---------EecCC
Confidence 988765433 3333 33444678999999999999998754 245555443 333333 33566
Q ss_pred CCeEEEEEccCCCeEEEEEECCCcEEEEE----------CCcceEEeecCCccEEEEEE
Q 004404 701 RKITGFQFAPGSSSEVLVTSADSRIRVVD----------GIDLVHKFKGENYVQYMVCI 749 (755)
Q Consensus 701 ~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD----------~~~ll~~~~GH~~~V~sv~f 749 (755)
..|+++.|-..|= .+ +-..|+.|.+-+ ....+..+.+...+.+.+.|
T Consensus 309 ~~It~lsWEg~gL-ri-A~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~F 365 (1189)
T KOG2041|consen 309 SCITGLSWEGTGL-RI-AIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMF 365 (1189)
T ss_pred ceeeeeEEcCCce-EE-EEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEE
Confidence 7899999987663 33 334566666644 13455666666666666655
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.92 E-value=9.7e-08 Score=107.39 Aligned_cols=164 Identities=16% Similarity=0.231 Sum_probs=118.3
Q ss_pred cCCCceEEeccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEE-EEECC
Q 004404 555 LSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLD 629 (755)
Q Consensus 555 ~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~D---gtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~La-SgS~D 629 (755)
..+.....+..+...+....|+|+ .+|+.+..+ ..|++||+.+++......+...+.+++|+| +++.|+ +.+.+
T Consensus 177 ~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~ 255 (417)
T TIGR02800 177 YDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKD 255 (417)
T ss_pred CCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCC
Confidence 344445566667777899999999 566666543 479999999887665555667778899999 887665 44444
Q ss_pred C--cEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECC-C--cEEEEECCCCeeeeccccccccccccCCCCCeE
Q 004404 630 A--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (755)
Q Consensus 630 g--tVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~D-G--~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (755)
+ .|++||+.+++...+..+........|+|||+.|+..+.. + .|++|++.+++.... ..+...+.
T Consensus 256 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l----------~~~~~~~~ 325 (417)
T TIGR02800 256 GNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL----------TFRGGYNA 325 (417)
T ss_pred CCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe----------ecCCCCcc
Confidence 4 5889999988777666655556678999999988876543 3 588888887654321 12345567
Q ss_pred EEEEccCCCeEEEEEECCC---cEEEEEC
Q 004404 705 GFQFAPGSSSEVLVTSADS---RIRVVDG 730 (755)
Q Consensus 705 sl~fsPdg~~~L~sgs~Dg---~IrVWD~ 730 (755)
.+.|+|+|. +|+.++.++ .|.+||.
T Consensus 326 ~~~~spdg~-~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 326 SPSWSPDGD-LIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CeEECCCCC-EEEEEEccCCceEEEEEeC
Confidence 889999998 677776665 7888883
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=2.6e-08 Score=103.83 Aligned_cols=228 Identities=19% Similarity=0.340 Sum_probs=145.5
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEe--ecCCCCceeccccCCCceeeeccc
Q 004404 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA--NGSPEPTSLSPKHLDNHLEKKRRG 533 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v--~~s~dg~~l~~~s~d~~i~~~~~~ 533 (755)
.+-|.+|.|..+|.+||||..+|.|.++.-..... .++ .+... ...|+-.+
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey----------~~~t~fqshepEFDY---------------- 77 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEY----------NFQTEFQSHEPEFDY---------------- 77 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc-cce----------eeeeeeeccCcccch----------------
Confidence 45789999999999999999999999997432221 011 00000 00000000
Q ss_pred ccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCCC------------
Q 004404 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSK------------ 598 (755)
Q Consensus 534 ~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~------------ 598 (755)
+..+ .-...|..+.|.++ ..++....|++|++|.+...
T Consensus 78 --------------------------LkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~ 130 (433)
T KOG1354|consen 78 --------------------------LKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEE 130 (433)
T ss_pred --------------------------hhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccccccccccc
Confidence 0001 11245788889886 46888899999999987521
Q ss_pred -----------------------cEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC----cEEEeccCC
Q 004404 599 -----------------------TCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER----QVVDWNDLH 649 (755)
Q Consensus 599 -----------------------~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~----~~v~~~~~~ 649 (755)
.|.+.+. |+--|++|.++. |...++++. |=.|.+|++.-- .++....+.
T Consensus 131 ~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~n 208 (433)
T KOG1354|consen 131 GPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPAN 208 (433)
T ss_pred CCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccC
Confidence 1223333 777899999998 888888764 788999998532 233443333
Q ss_pred -----CCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeecc------ccccccc-cccCCCCCeEEEEEccCCCeEE
Q 004404 650 -----EMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKS------PINLQNK-KKRSHQRKITGFQFAPGSSSEV 716 (755)
Q Consensus 650 -----~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~------~i~~~~~-~~~~h~~~Vtsl~fsPdg~~~L 716 (755)
.-|++..|+|.. ..++-.+..|+|+|-|++...+.... +...... -+..--..|..+.|++.|. ++
T Consensus 209 mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr-yi 287 (433)
T KOG1354|consen 209 MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR-YI 287 (433)
T ss_pred HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc-EE
Confidence 468999999954 56667888999999999854432211 1010000 0112234688999999997 55
Q ss_pred EEEECCCcEEEEEC---CcceEEeecCC
Q 004404 717 LVTSADSRIRVVDG---IDLVHKFKGEN 741 (755)
Q Consensus 717 ~sgs~Dg~IrVWD~---~~ll~~~~GH~ 741 (755)
++-. =-+|+|||. ...+.++.-|.
T Consensus 288 lsRD-yltvk~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 288 LSRD-YLTVKLWDLNMEAKPVETYPVHE 314 (433)
T ss_pred EEec-cceeEEEeccccCCcceEEeehH
Confidence 5443 368999993 45677777664
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.89 E-value=7.4e-06 Score=90.22 Aligned_cols=275 Identities=12% Similarity=0.115 Sum_probs=156.1
Q ss_pred cEEEEeeC--CCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC----CCcEEEEeCcCC-ceeeeeecccccCcc
Q 004404 431 VRVRQYGK--SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE----DCVIHVWQVVES-ERKGELLEKQEDGHL 503 (755)
Q Consensus 431 g~Vriwd~--~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~----DGtVrVWdl~t~-~~~~~l~~~~~~~~~ 503 (755)
+.|.+|.. .++++.... .+. -......|+++|++++|++..+ ++.|..|.+... ..+..+..... ..
T Consensus 13 ~gI~~~~~d~~~g~l~~~~---~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g- 86 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQ---TVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GG- 86 (345)
T ss_dssp TEEEEEEEETTTTEEEEEE---EEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SS-
T ss_pred CcEEEEEEcCCCCCceEee---eec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CC-
Confidence 66777766 444443322 222 3344566899999999999987 578999998765 22222221111 11
Q ss_pred ccEEEeecCCCCceeccccC-CCceeeecccccccccccccCcccccc-eeeecCCCceEEeccCCCCEEEEEecCC-cE
Q 004404 504 NMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPE-TVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (755)
Q Consensus 504 ~~v~~v~~s~dg~~l~~~s~-d~~i~~~~~~~~~~~~s~s~d~~~~~~-~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~ 580 (755)
..-..+..++++..++.+.. ++.+....... +...... .++...+.-...-........++.++|+ ++
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~---------~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD---------DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECT---------TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccC---------CcccceeeeecccCCCCCcccccccccceeEEECCCCCE
Confidence 22235667788777766543 34442222211 1000000 0000000000000112345789999999 55
Q ss_pred EEEEe-CCCcEEEEECCCCc--EEE--Ee--ecCCceEEEEEeeCCCcEEEEE-ECCCcEEEEECC--CCcEE--Eecc-
Q 004404 581 LLSSS-MDKTVRLWHLSSKT--CLK--IF--SHSDYVTCIQFNPVDDRYFISG-SLDAKVRIWSIP--ERQVV--DWND- 647 (755)
Q Consensus 581 LaSgs-~DgtVrLWDl~t~~--~~~--~~--~h~~~VtsVafsP~dg~~LaSg-S~DgtVrIWDl~--t~~~v--~~~~- 647 (755)
+++.. ....|++|++.... ... .+ ........+.|+| ++++++.. -.+++|.++++. ++.+. ....
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence 55543 34579999997654 322 22 3556788999999 88777555 557889999988 44332 1111
Q ss_pred ------CCCCEEEEEEccCCCEEEEEEC-CCcEEEEECC--CCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 648 ------LHEMVTAACYTPDGQGALVGSY-KGSCHLYNTS--ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 648 ------~~~~VtsvafSPdG~~LasGs~-DG~I~lwDl~--~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
.......++++|||++|+++.. .+.|.+|++. ++.+.....+ .........++++|+|+ +|++
T Consensus 237 ~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~-------~~~G~~Pr~~~~s~~g~-~l~V 308 (345)
T PF10282_consen 237 LPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV-------PTGGKFPRHFAFSPDGR-YLYV 308 (345)
T ss_dssp CETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE-------EESSSSEEEEEE-TTSS-EEEE
T ss_pred ccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE-------eCCCCCccEEEEeCCCC-EEEE
Confidence 1126889999999999998764 5779999993 3444332211 12234578999999999 5555
Q ss_pred E-ECCCcEEEEE
Q 004404 719 T-SADSRIRVVD 729 (755)
Q Consensus 719 g-s~Dg~IrVWD 729 (755)
+ -.++.|.+|+
T Consensus 309 a~~~s~~v~vf~ 320 (345)
T PF10282_consen 309 ANQDSNTVSVFD 320 (345)
T ss_dssp EETTTTEEEEEE
T ss_pred EecCCCeEEEEE
Confidence 5 4677999996
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.84 E-value=5.2e-07 Score=100.30 Aligned_cols=114 Identities=16% Similarity=0.269 Sum_probs=96.8
Q ss_pred ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc
Q 004404 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (755)
Q Consensus 564 ~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~ 641 (755)
..|.+.|.++.|+.+ +.|.+++.|+.|..|+...+..++.+. .+..+.+++.+| |+..+++++ ++|++||+.+++
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~ke 175 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKE 175 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCce
Confidence 368899999999987 899999999999999999999999887 777899999999 899999887 789999999999
Q ss_pred EEE-eccCCCCEEEEEEccC-----CCEEEEE-ECCCcEEEEECCC
Q 004404 642 VVD-WNDLHEMVTAACYTPD-----GQGALVG-SYKGSCHLYNTSE 680 (755)
Q Consensus 642 ~v~-~~~~~~~VtsvafSPd-----G~~LasG-s~DG~I~lwDl~~ 680 (755)
++. +.+|..+|.+++|..+ |.+++++ ..+..+.+|-+..
T Consensus 176 vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 176 VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 885 4556679999999887 7777764 4455677786654
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=8.5e-07 Score=100.42 Aligned_cols=131 Identities=11% Similarity=0.103 Sum_probs=88.3
Q ss_pred EEEEEecCCc-EEEEEe-CCCcEEEEE--CCC-CcEEEEee-cCCceEEEEEeeCCCcEEEEEECC---CcEEEEECCCC
Q 004404 570 VLDLSWSKSQ-HLLSSS-MDKTVRLWH--LSS-KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLD---AKVRIWSIPER 640 (755)
Q Consensus 570 V~~L~~spd~-~LaSgs-~DgtVrLWD--l~t-~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~D---gtVrIWDl~t~ 640 (755)
....+|+|++ .|+..+ .++...||. +.. +.....+. +...+....|+| |+++|+..+.+ ..|.+||+.++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCC
Confidence 3567899994 455544 466555554 432 23333343 456778899999 99988876653 36999999999
Q ss_pred cEEEeccCCCCEEEEEEccCCCEEEEEEC---CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccC
Q 004404 641 QVVDWNDLHEMVTAACYTPDGQGALVGSY---KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (755)
Q Consensus 641 ~~v~~~~~~~~VtsvafSPdG~~LasGs~---DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd 711 (755)
+...+......+....|+|||++|+.... ...|++||+.+++..... ...+.+...+|+|-
T Consensus 362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt----------~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV----------IGSGEKRFPSWGAF 425 (428)
T ss_pred CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee----------cCCCcccCceecCC
Confidence 88766655556788999999998886443 356889999887654321 22344566778774
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.79 E-value=8.4e-08 Score=100.20 Aligned_cols=247 Identities=14% Similarity=0.170 Sum_probs=171.7
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCc-CCceeeeeecccccCccccEEEeecCCCCceeccccCCCce
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~-t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i 527 (755)
++.++||.+.|+....-|-..-+++.+.|.++|||--. .++.-..+ ......++....+.++...|..+...+.+
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI----~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI----YHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh----hhhCCCCceEeeeeccceEEEEEEecceE
Confidence 34578999999999998877789999999999999643 23322222 23345566777778887777777665554
Q ss_pred eeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004404 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (755)
Q Consensus 528 ~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h 606 (755)
...... .+.. .-..++.+..|...|..+-|+.. ..+++.+.|+.+.---.+.+..+.-+..
T Consensus 93 tefs~s---------edfn---------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 93 TEFALS---------EDFN---------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred EEEEhh---------hhhh---------hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe
Confidence 221111 1110 11234567789999999999876 7889999998775444444444433322
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCC---CcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCee
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE---RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t---~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~ 683 (755)
....+++.|.- .+...|...|.|.+-.+.. +.+..+.+|...+++++|.|..+.|.+|..|..+.+||+-..+.
T Consensus 155 ~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g 231 (404)
T KOG1409|consen 155 ETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG 231 (404)
T ss_pred eccCCCCceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc
Confidence 23333344432 1555566667666555433 23346778889999999999999999999999999999987665
Q ss_pred eeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.... +.+|...|..+...+.-. .+++++.||.|.+||
T Consensus 232 ~~~e--------l~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 232 TAYE--------LQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWN 268 (404)
T ss_pred eeee--------eccchhhhhhhhhhhhhe-eeeeccCCCeEEEEe
Confidence 5422 348999999998887766 899999999999999
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=7.8e-07 Score=100.81 Aligned_cols=165 Identities=12% Similarity=0.164 Sum_probs=114.2
Q ss_pred eecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEE-EEE
Q 004404 553 FALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGS 627 (755)
Q Consensus 553 ~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~D---gtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~La-SgS 627 (755)
.+..+.....+..+...+....|+|+ ++|+..+.+ ..|.+|++.+++........+.+....|+| +++.|+ +.+
T Consensus 184 ~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~ 262 (430)
T PRK00178 184 SDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLS 262 (430)
T ss_pred ECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEc
Confidence 34445555666677788999999999 566665543 369999999887665544455566789999 888776 445
Q ss_pred CCC--cEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEEC-CC--cEEEEECCCCeeeeccccccccccccCCCCC
Q 004404 628 LDA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (755)
Q Consensus 628 ~Dg--tVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~-DG--~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (755)
.++ .|.+||+.+++...+..+........|+|||+.|+..+. +| .|+++++.+++..... ..+ ..
T Consensus 263 ~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt--------~~~--~~ 332 (430)
T PRK00178 263 KDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT--------FVG--NY 332 (430)
T ss_pred cCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--------cCC--CC
Confidence 555 588889999887776666666778899999998877654 33 5888888877644321 011 22
Q ss_pred eEEEEEccCCCeEEEEEEC-CC--cEEEEE
Q 004404 703 ITGFQFAPGSSSEVLVTSA-DS--RIRVVD 729 (755)
Q Consensus 703 Vtsl~fsPdg~~~L~sgs~-Dg--~IrVWD 729 (755)
.....|+|+|+ +|+..+. ++ .|.+||
T Consensus 333 ~~~~~~Spdg~-~i~~~~~~~~~~~l~~~d 361 (430)
T PRK00178 333 NARPRLSADGK-TLVMVHRQDGNFHVAAQD 361 (430)
T ss_pred ccceEECCCCC-EEEEEEccCCceEEEEEE
Confidence 34568999998 4555543 33 577888
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.75 E-value=3.4e-05 Score=84.37 Aligned_cols=261 Identities=8% Similarity=0.026 Sum_probs=152.1
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC----------CCcEEEEeCcCCceeeeeeccccc
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE----------DCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~----------DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
++|.+.|..+.+...... .-..+- .+ ++|||+.|+.+.. +..|.|||+.+.+...++......
T Consensus 27 ~~v~ViD~~~~~v~g~i~-----~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD-----GGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEEEE-----ccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 888999988766544332 222222 24 9999998877765 789999999999999887532211
Q ss_pred C--ccccEEEeecCCCCceeccccCC--CceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec
Q 004404 501 G--HLNMLLLANGSPEPTSLSPKHLD--NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 501 ~--~~~~v~~v~~s~dg~~l~~~s~d--~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
. ....-..+..+++++.+.....+ ..+. .+...+.+.+.++.-- +...-...+
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~----------------------VvD~~~~kvv~ei~vp-~~~~vy~t~ 156 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG----------------------VVDLEGKAFVRMMDVP-DCYHIFPTA 156 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEE----------------------EEECCCCcEEEEEeCC-CCcEEEEec
Confidence 1 12223467788888877654322 2221 1222233333333321 111112222
Q ss_pred CCcEEEEEeCCCcEEEEECCC-CcEE-E---Eeec------CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc----
Q 004404 577 KSQHLLSSSMDKTVRLWHLSS-KTCL-K---IFSH------SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ---- 641 (755)
Q Consensus 577 pd~~LaSgs~DgtVrLWDl~t-~~~~-~---~~~h------~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~---- 641 (755)
+...+ +-+.||......+.. ++.. . .|.. ..+ .|.+.++.++..... |+|.+.|+....
T Consensus 157 e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 157 NDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL 230 (352)
T ss_pred CCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceec
Confidence 22222 223444444433322 1111 1 1111 122 345536777666655 999999964432
Q ss_pred -EEEecc--------CCCCEEEEEEccCCCEEEEEEC----------CCcEEEEECCCCeeeeccccccccccccCCCCC
Q 004404 642 -VVDWND--------LHEMVTAACYTPDGQGALVGSY----------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (755)
Q Consensus 642 -~v~~~~--------~~~~VtsvafSPdG~~LasGs~----------DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (755)
...... ....+.-++++|+++.|++... .+.|.++|+.+++.+..+.. ...
T Consensus 231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----------G~~ 300 (352)
T TIGR02658 231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----------GHE 300 (352)
T ss_pred ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----------CCc
Confidence 222221 1233445999999999998542 24799999999998886542 357
Q ss_pred eEEEEEccCCCeEEEEEE-CCCcEEEEE--CCcceEEe
Q 004404 703 ITGFQFAPGSSSEVLVTS-ADSRIRVVD--GIDLVHKF 737 (755)
Q Consensus 703 Vtsl~fsPdg~~~L~sgs-~Dg~IrVWD--~~~ll~~~ 737 (755)
+.+++++|+++.+|+++. .++.|.|+| +++.+.++
T Consensus 301 ~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 301 IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 899999999984555554 688999999 46777776
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=2e-05 Score=83.61 Aligned_cols=266 Identities=13% Similarity=0.161 Sum_probs=161.8
Q ss_pred CcEEEEeeCCC--CcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECC---CcEEEEeCcCCceeeeee-cccccCcc
Q 004404 430 RVRVRQYGKSC--KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELL-EKQEDGHL 503 (755)
Q Consensus 430 dg~Vriwd~~~--~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~D---GtVrVWdl~t~~~~~~l~-~~~~~~~~ 503 (755)
..-|++|++.+ +++... ++-.+.+.++-|+|+|++++|+++-.+ |.|-.|.+....-..+++ .....+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~ 90 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP 90 (346)
T ss_pred CCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC
Confidence 56677777653 333322 234678889999999999999998664 778888876531112221 11112221
Q ss_pred ccEEEeecCCCCceeccccCC-CceeeecccccccccccccCcccccceeeecCCCceEEeccCCCC----------EEE
Q 004404 504 NMLLLANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD----------VLD 572 (755)
Q Consensus 504 ~~v~~v~~s~dg~~l~~~s~d-~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~----------V~~ 572 (755)
-..++.++++.++.++... +.+...... .++.. .....+..|.+. +..
T Consensus 91 --p~yvsvd~~g~~vf~AnY~~g~v~v~p~~---------~dG~l----------~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 91 --PCYVSVDEDGRFVFVANYHSGSVSVYPLQ---------ADGSL----------QPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CeEEEECCCCCEEEEEEccCceEEEEEcc---------cCCcc----------ccceeeeecCCCCCCccccCCccce
Confidence 1567778888777665433 222221111 11111 011111122222 778
Q ss_pred EEecCCc-EEEEEeC-CCcEEEEECCCCcEEEEe----ecCCceEEEEEeeCCCcEEEEEE-CCCcEEEEECCC--CcEE
Q 004404 573 LSWSKSQ-HLLSSSM-DKTVRLWHLSSKTCLKIF----SHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPE--RQVV 643 (755)
Q Consensus 573 L~~spd~-~LaSgs~-DgtVrLWDl~t~~~~~~~----~h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWDl~t--~~~v 643 (755)
..+.|++ +|++..- --.|.+|++..+.+...- .....-..|.|+| ++++.+... .+++|.+|.... +++.
T Consensus 150 a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 8899995 5555543 346999999977543322 3556678999999 898877654 589999999877 3322
Q ss_pred Ee---------ccCCCCEEEEEEccCCCEEEEEEC-CCcEEEEECCC--CeeeeccccccccccccCCCCCeEEEEEccC
Q 004404 644 DW---------NDLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSE--NKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (755)
Q Consensus 644 ~~---------~~~~~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~--~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd 711 (755)
.+ +....+..++.++|||++|+++.. ...|-+|.+.. +++..... ...+...-..+.|.|+
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~-------~~teg~~PR~F~i~~~ 301 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI-------TPTEGQFPRDFNINPS 301 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE-------eccCCcCCccceeCCC
Confidence 21 223357889999999999999754 23677777754 33322211 1234455788999999
Q ss_pred CCeEEEEEE-CCCcEEEEE
Q 004404 712 SSSEVLVTS-ADSRIRVVD 729 (755)
Q Consensus 712 g~~~L~sgs-~Dg~IrVWD 729 (755)
++ +|+++. .+..|.||.
T Consensus 302 g~-~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 302 GR-FLIAANQKSDNITVFE 319 (346)
T ss_pred CC-EEEEEccCCCcEEEEE
Confidence 98 566554 455788987
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.70 E-value=9.8e-07 Score=90.74 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=123.0
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEE--Eee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc-EE-
Q 004404 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK--IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VV- 643 (755)
Q Consensus 570 V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~--~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~-~v- 643 (755)
..++.|++. ..++++-.+|.+.+-+........ +.+ |.-.++-..|+-.+.+++++|+.|+.+..||++... .+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 456778876 558888888998866655544433 454 899999999988778899999999999999999433 22
Q ss_pred -EeccCCCCEEEEEEcc-CCCEEEEEECCCcEEEEECCC-CeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 644 -DWNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 644 -~~~~~~~~VtsvafSP-dG~~LasGs~DG~I~lwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
....|...|.++.-+| .+.+|++|+.|-.|++||.++ ++++... .-.+.|..+.++|.-...|+.++
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----------~v~GGVWRi~~~p~~~~~lL~~C 273 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----------KVGGGVWRIKHHPEIFHRLLAAC 273 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----------ccccceEEEEecchhhhHHHHHH
Confidence 2334667888888877 678999999999999999995 4444322 33488999999997544556666
Q ss_pred CCCcEEEEE----CCc---ceEEeecCCccEEEEEE
Q 004404 721 ADSRIRVVD----GID---LVHKFKGENYVQYMVCI 749 (755)
Q Consensus 721 ~Dg~IrVWD----~~~---ll~~~~GH~~~V~sv~f 749 (755)
.-.-.+|-+ ..+ .+..++.|..-++...+
T Consensus 274 Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 274 MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred HhcCceEEEecccccchheeeeccccccceeecccc
Confidence 555566665 233 45566777776666554
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=2.5e-07 Score=103.84 Aligned_cols=238 Identities=16% Similarity=0.207 Sum_probs=155.0
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccccc
Q 004404 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~ 535 (755)
.....|+.|+....|+|.||.||.++|-.+.+....... . | ++..+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~-----~--------------g--laa~s------------- 59 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNK-----S--------------G--LAAAS------------- 59 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccc-----c--------------c--ccccc-------------
Confidence 356789999999999999999999999988665422211 0 0 00000
Q ss_pred ccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEe---ecCCceE
Q 004404 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYVT 611 (755)
Q Consensus 536 ~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~---~h~~~Vt 611 (755)
.-..-+++.||.+.|.-+.|+.+ +.|-++..+|.|.+|-+-.+.-...+ ...+.|.
T Consensus 60 --------------------nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~ 119 (1189)
T KOG2041|consen 60 --------------------NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVV 119 (1189)
T ss_pred --------------------ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEE
Confidence 00123467899999999999987 78888999999999998877544333 2567899
Q ss_pred EEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeee------
Q 004404 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ------ 685 (755)
Q Consensus 612 sVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~------ 685 (755)
+++|+. +|..++..-.||.|.+=.+...++-...-.......+.|++|.+.++.+-.+|.+++||....-...
T Consensus 120 SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~ 198 (1189)
T KOG2041|consen 120 SMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCE 198 (1189)
T ss_pred EEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceE
Confidence 999998 9999988888888877666544332111111123456666766666666666666666654321000
Q ss_pred ---------------cccc------ccc-c---------------c--------cccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 686 ---------------KSPI------NLQ-N---------------K--------KKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 686 ---------------~~~i------~~~-~---------------~--------~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
.+.. ..+ . . ......-.|.+..|+++|. .|++++
T Consensus 199 Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~-vLAvcG 277 (1189)
T KOG2041|consen 199 VNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGA-VLAVCG 277 (1189)
T ss_pred EeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCc-EEEEcc
Confidence 0000 000 0 0 0001123578889999997 788887
Q ss_pred CC---------CcEEEEE-CCcceEEeecCCccEEEEEE
Q 004404 721 AD---------SRIRVVD-GIDLVHKFKGENYVQYMVCI 749 (755)
Q Consensus 721 ~D---------g~IrVWD-~~~ll~~~~GH~~~V~sv~f 749 (755)
.| +.|.+|. -++.+.+|+-....|.++++
T Consensus 278 ~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred CcccccCccccceEEEeccchhheEEEecCCceeeeeEE
Confidence 64 3688888 47888888877777776665
No 259
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.68 E-value=5.1e-08 Score=109.76 Aligned_cols=237 Identities=17% Similarity=0.236 Sum_probs=157.7
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEE
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~ 507 (755)
...+-.+|++....-.+.. ..+.+|..+|+.|.|+|.. ..|+|++.|-.|+.||+.+....
T Consensus 89 s~qkaiiwnlA~ss~~aIe--f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p---------------- 150 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSSSNAIE--FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP---------------- 150 (1081)
T ss_pred CcchhhhhhhhcCCccceE--EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc----------------
Confidence 3334445665433222221 2367999999999999965 48999999999999998654311
Q ss_pred EeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC-CcEEEEEeC
Q 004404 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-SQHLLSSSM 586 (755)
Q Consensus 508 ~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp-d~~LaSgs~ 586 (755)
+..+..-...-..+.|+- +..+++.+.
T Consensus 151 ----------------------------------------------------~ys~~~w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 151 ----------------------------------------------------FYSTSSWRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred ----------------------------------------------------eeeeecccccCceeeecccCcchhhhcc
Confidence 111111122345567765 367777888
Q ss_pred CCcEEEEECCCC-cEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC--cEEEeccCCCCEEEEEEccCCC
Q 004404 587 DKTVRLWHLSSK-TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVDWNDLHEMVTAACYTPDGQ 662 (755)
Q Consensus 587 DgtVrLWDl~t~-~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~--~~v~~~~~~~~VtsvafSPdG~ 662 (755)
.+.|++||++.| .++..++ |...|+.++|+..-...+.+++.|++|+.||.... ..........+|..-+|.|-|.
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 899999999876 5566665 88999999998755667899999999999998653 3335556667888888988665
Q ss_pred EEEEE--ECCCcEEEEECCCCeee-eccccccccccccCCCCCeEEEEEccCC---------CeEEEEEECCCcEEEEEC
Q 004404 663 GALVG--SYKGSCHLYNTSENKLQ-QKSPINLQNKKKRSHQRKITGFQFAPGS---------SSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 663 ~LasG--s~DG~I~lwDl~~~~~~-~~~~i~~~~~~~~~h~~~Vtsl~fsPdg---------~~~L~sgs~Dg~IrVWD~ 730 (755)
-..+- -.+..+.+++.++..+. ..+....+...+.+|...|..+.|-..+ ..+|++=+.|..+|+|-.
T Consensus 259 g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 259 GYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred eeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 44442 12235556655544332 1111222334567999999998885322 246888899999999975
Q ss_pred CcceE
Q 004404 731 IDLVH 735 (755)
Q Consensus 731 ~~ll~ 735 (755)
+.-++
T Consensus 339 ~~~i~ 343 (1081)
T KOG0309|consen 339 DSQIQ 343 (1081)
T ss_pred cHHHH
Confidence 44333
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.67 E-value=1.2e-05 Score=100.22 Aligned_cols=159 Identities=12% Similarity=0.154 Sum_probs=109.4
Q ss_pred EEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEeec---------------CCceEEEEEeeCCCc-EEEEEECCCc
Q 004404 570 VLDLSWSK-SQ-HLLSSSMDKTVRLWHLSSKTCLKIFSH---------------SDYVTCIQFNPVDDR-YFISGSLDAK 631 (755)
Q Consensus 570 V~~L~~sp-d~-~LaSgs~DgtVrLWDl~t~~~~~~~~h---------------~~~VtsVafsP~dg~-~LaSgS~Dgt 631 (755)
.++++++| ++ .+++.+.++.|++||..++........ -...+.|+|+| +++ ++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCe
Confidence 46899998 44 456667789999999987654322110 12456799999 776 5566677799
Q ss_pred EEEEECCCCcEEEecc--------------C--------CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccc
Q 004404 632 VRIWSIPERQVVDWND--------------L--------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (755)
Q Consensus 632 VrIWDl~t~~~v~~~~--------------~--------~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i 689 (755)
|++||+.++....... . -.....++++++|+.+++-..++.|++||..++........
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 9999998765321110 0 11356899999999888888899999999988776543210
Q ss_pred ccc----cccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 690 NLQ----NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 690 ~~~----~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
-.. .....++.....+++++++|. ++++-+.+++|++||.
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDL 887 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEEC
Confidence 000 001123334678999999997 7777789999999994
No 261
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2.8e-08 Score=108.39 Aligned_cols=175 Identities=14% Similarity=0.191 Sum_probs=129.0
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
.+.+.||+..|..|+--.+.+-+++++.|++|++|.+.......
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~------------------------------------ 771 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI------------------------------------ 771 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc------------------------------------
Confidence 46678999999999887788889999999999999974321000
Q ss_pred eecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee--
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-- 605 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-- 605 (755)
.+..+..+++.|..+|.++.|-.+ .+++ +.|+.|.+||.--++++..+.
T Consensus 772 --------------------------~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 772 --------------------------GTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred --------------------------ccceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcC
Confidence 012345678899999999999877 4454 458899999988777766442
Q ss_pred -cCCceEEEEEeeC-CCcEEEEE-ECCCcEEEEECCCCcEEE---ec---cCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 004404 606 -HSDYVTCIQFNPV-DDRYFISG-SLDAKVRIWSIPERQVVD---WN---DLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (755)
Q Consensus 606 -h~~~VtsVafsP~-dg~~LaSg-S~DgtVrIWDl~t~~~v~---~~---~~~~~VtsvafSPdG~~LasGs~DG~I~lw 676 (755)
..+.+..|..-|. +..+++.| +...+|+++|.+....+. .. .....+.+++..|.|+.++++-.+|+|.+.
T Consensus 824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAIL 903 (1034)
T ss_pred cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEE
Confidence 3334444444442 34445444 789999999999877552 22 223568899999999999999999999999
Q ss_pred ECCCCeeeecc
Q 004404 677 NTSENKLQQKS 687 (755)
Q Consensus 677 Dl~~~~~~~~~ 687 (755)
|.++|+.+..+
T Consensus 904 DaR~G~vINsw 914 (1034)
T KOG4190|consen 904 DARNGKVINSW 914 (1034)
T ss_pred ecCCCceeccC
Confidence 99999977654
No 262
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.65 E-value=4.4e-06 Score=92.61 Aligned_cols=172 Identities=17% Similarity=0.168 Sum_probs=117.9
Q ss_pred CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEE-CCCcEE
Q 004404 556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVR 633 (755)
Q Consensus 556 s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS-~DgtVr 633 (755)
+.+.+..+.........+.++|+ .++++++.|+.|.++|+.+.+.+.++.......++++++ |+++++++. ..+.|.
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~-DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP-DGKYVYVANYEPGTVS 103 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE---TTTEEEEEEEETTEEE
T ss_pred CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC-CCCEEEEEecCCCcee
Confidence 45667777765444455788998 678888999999999999999999998777889999999 999888765 689999
Q ss_pred EEECCCCcEEEeccCC--------CCEEEEEEccCCCEEEEEEC-CCcEEEEECCCCeeeeccccccccccccCCCCCeE
Q 004404 634 IWSIPERQVVDWNDLH--------EMVTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (755)
Q Consensus 634 IWDl~t~~~v~~~~~~--------~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (755)
++|.++.++++..... ..+.++..+|....+++.-. .+.|.+.|....+.+....+ .......
T Consensus 104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i--------~~g~~~~ 175 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI--------KVGRFPH 175 (369)
T ss_dssp EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE--------E--TTEE
T ss_pred EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee--------ccccccc
Confidence 9999999888654332 36778888998886666655 48888889877644332111 2345567
Q ss_pred EEEEccCCCeEEEEEECCCcEEEEEC--CcceEE
Q 004404 705 GFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHK 736 (755)
Q Consensus 705 sl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~ 736 (755)
...|.|+++.++++......|-++|. ++++..
T Consensus 176 D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 176 DGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred ccccCcccceeeecccccceeEEEeeccceEEEE
Confidence 88999999855555566779999994 444443
No 263
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.65 E-value=5.3e-07 Score=105.72 Aligned_cols=160 Identities=13% Similarity=0.192 Sum_probs=130.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCceE-----EEEEeeCCCcEEEEEECCCcEEEEECCC-CcEEEeccCCCC
Q 004404 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVT-----CIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWNDLHEM 651 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~Vt-----sVafsP~dg~~LaSgS~DgtVrIWDl~t-~~~v~~~~~~~~ 651 (755)
+..++....+..+.+||...+..+....+....+ -+.+++ +.-++++|+.-+.|.+|+... .....+..|.+.
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 3778889999999999999887777766554322 233455 667899999999999999863 334468899999
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE-C
Q 004404 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-G 730 (755)
Q Consensus 652 VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD-~ 730 (755)
|.++.|+-||.++++.+.|.++|+|++.+.+..... .-+|..+|..+.|.|+ ++++++.|.+.++|+ .
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~--------~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT--------GFGHSARVWACCFLPN---RIITVGEDCTCRVWGVN 246 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCcc--------cccccceeEEEEeccc---eeEEeccceEEEEEecc
Confidence 999999999999999999999999999998876622 2389999999999998 699999999999998 5
Q ss_pred CcceEEeecCCcc-EEEEEE
Q 004404 731 IDLVHKFKGENYV-QYMVCI 749 (755)
Q Consensus 731 ~~ll~~~~GH~~~-V~sv~f 749 (755)
++.+.+|++|... ++.++.
T Consensus 247 ~~~l~~y~~h~g~~iw~~~~ 266 (967)
T KOG0974|consen 247 GTQLEVYDEHSGKGIWKIAV 266 (967)
T ss_pred cceehhhhhhhhcceeEEEE
Confidence 6777789998765 555443
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.65 E-value=1.4e-05 Score=87.31 Aligned_cols=234 Identities=10% Similarity=-0.004 Sum_probs=136.4
Q ss_pred eCCCcEEEEeeCCCCcccceeeeeEe-e-cccCCEEEEEEcCCCCEEEEEEC--CCcEEEEeCcCCceeeeeecccccCc
Q 004404 427 GQERVRVRQYGKSCKDLTALYKCQEI-Q-AHNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 427 g~~dg~Vriwd~~~~~~~~~~~~q~l-~-gH~~~I~sI~fSpdg~~LaTgs~--DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
|..+..|.+||..+.+......+-.- + ........++++|||++|+.... +..|.|.|+.+++.+.++.. +.
T Consensus 73 G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~ 148 (352)
T TIGR02658 73 GKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PD 148 (352)
T ss_pred CCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CC
Confidence 33889999999987765533321000 0 01223457899999999987763 68999999999998887742 11
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccc--cceeeecCCCceEEeccCCCCEEEEEecC-Cc
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV--PETVFALSDKPICSFQGHLDDVLDLSWSK-SQ 579 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~--~~~v~~~s~k~i~~l~gH~~~V~~L~~sp-d~ 579 (755)
.......+....++.+. .......... .++... ...++.....++ ...+ .|.+ ++
T Consensus 149 --~~~vy~t~e~~~~~~~~-Dg~~~~v~~d----------~~g~~~~~~~~vf~~~~~~v-----~~rP----~~~~~dg 206 (352)
T TIGR02658 149 --CYHIFPTANDTFFMHCR-DGSLAKVGYG----------TKGNPKIKPTEVFHPEDEYL-----INHP----AYSNKSG 206 (352)
T ss_pred --CcEEEEecCCccEEEee-cCceEEEEec----------CCCceEEeeeeeecCCcccc-----ccCC----ceEcCCC
Confidence 11111121111111111 0000000000 000000 000000000000 0111 2344 54
Q ss_pred EEEEEeCCCcEEEEECCC-----CcEEEEee--------cCCceEEEEEeeCCCcEEEEEE----------CCCcEEEEE
Q 004404 580 HLLSSSMDKTVRLWHLSS-----KTCLKIFS--------HSDYVTCIQFNPVDDRYFISGS----------LDAKVRIWS 636 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t-----~~~~~~~~--------h~~~VtsVafsP~dg~~LaSgS----------~DgtVrIWD 636 (755)
..+-.+..|+|.+.|+.. .+....+. ..+.+.-++++| ++++++... ..+.|.++|
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEE
Confidence 444444449999999643 23333332 233445599999 777777643 124799999
Q ss_pred CCCCcEEEeccCCCCEEEEEEccCCC-EEEEEE-CCCcEEEEECCCCeeeecc
Q 004404 637 IPERQVVDWNDLHEMVTAACYTPDGQ-GALVGS-YKGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 637 l~t~~~v~~~~~~~~VtsvafSPdG~-~LasGs-~DG~I~lwDl~~~~~~~~~ 687 (755)
+.+++.+..+.....+..++++||++ +|++.. .++.|.++|+.+++.+..+
T Consensus 286 ~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 286 AKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99999998888888999999999999 888766 5788999999999888764
No 265
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.64 E-value=0.00011 Score=81.09 Aligned_cols=236 Identities=14% Similarity=0.185 Sum_probs=141.3
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC-CCcEEEEeCcCCceeeeeeccc---------
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQ--------- 498 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~-DGtVrVWdl~t~~~~~~l~~~~--------- 498 (755)
..+.|..|.+.... ..+..+............|+++|++++|+++.. +|.|.++++.....+.......
T Consensus 60 ~~g~v~~~~i~~~~-g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~ 138 (345)
T PF10282_consen 60 DSGGVSSYRIDPDT-GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP 138 (345)
T ss_dssp TTTEEEEEEEETTT-TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred CCCCEEEEEECCCc-ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence 46788888776431 122222233323445668999999999999875 8999999998754333321100
Q ss_pred ccCccccEEEeecCCCCceeccccCC-CceeeecccccccccccccCcccccceeeecCCCc--eEEec-cCCCCEEEEE
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP--ICSFQ-GHLDDVLDLS 574 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~s~d-~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~--i~~l~-gH~~~V~~L~ 574 (755)
..........+.++|++..+.....+ ..+........ .++. ...+. ........+.
T Consensus 139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~--------------------~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD--------------------TGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT--------------------S-TEEEEEEEECSTTSSEEEEE
T ss_pred cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC--------------------CceEEEeeccccccCCCCcEEE
Confidence 01123445678889998876664332 22211111100 0000 11221 2345578899
Q ss_pred ecCC-cEE-EEEeCCCcEEEEECC--CCc--EEEEee-------cCCceEEEEEeeCCCcEEEEEE-CCCcEEEEECC--
Q 004404 575 WSKS-QHL-LSSSMDKTVRLWHLS--SKT--CLKIFS-------HSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIP-- 638 (755)
Q Consensus 575 ~spd-~~L-aSgs~DgtVrLWDl~--t~~--~~~~~~-------h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWDl~-- 638 (755)
|+|+ .++ ++.-.+++|.++++. .+. .++.+. .......|.++| ++++|+++. ...+|.+|++.
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTT
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecC
Confidence 9998 444 455568899999988 443 222332 122688999999 898877765 56789999993
Q ss_pred CCcEE--EeccC-CCCEEEEEEccCCCEEEEEEC-CCcEEEEEC--CCCeeeec
Q 004404 639 ERQVV--DWNDL-HEMVTAACYTPDGQGALVGSY-KGSCHLYNT--SENKLQQK 686 (755)
Q Consensus 639 t~~~v--~~~~~-~~~VtsvafSPdG~~LasGs~-DG~I~lwDl--~~~~~~~~ 686 (755)
++++. ..... ......++++|+|++|+++.. ++.|.+|++ .+|.+...
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 34443 33332 456899999999999999874 568888866 56766553
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=1.9e-06 Score=98.33 Aligned_cols=165 Identities=16% Similarity=0.231 Sum_probs=109.0
Q ss_pred ecCCCceEEeccCCCCEEEEEecCC-cEEEEEeC-CC--cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEE-EEC
Q 004404 554 ALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM-DK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFIS-GSL 628 (755)
Q Consensus 554 ~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~-Dg--tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaS-gS~ 628 (755)
+..+...+.+..+...+....|+|+ .+|+..+. ++ .|++||+.+++...............|+| |++.|+. .+.
T Consensus 204 d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~ 282 (448)
T PRK04792 204 DYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSK 282 (448)
T ss_pred eCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeC
Confidence 3344444555666778899999999 45665543 33 58899998887644433344455789999 8887764 566
Q ss_pred CCc--EEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEEC-CC--cEEEEECCCCeeeeccccccccccccCCCCCe
Q 004404 629 DAK--VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (755)
Q Consensus 629 Dgt--VrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~-DG--~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (755)
++. |.+||+.+++...+..+.......+|+|||+.|+..+. ++ .|+++|+.+++..... .+....
T Consensus 283 ~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt----------~~g~~~ 352 (448)
T PRK04792 283 DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT----------FEGEQN 352 (448)
T ss_pred CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe----------cCCCCC
Confidence 665 77889988887776666666788999999998887654 33 4777788777643321 111223
Q ss_pred EEEEEccCCCeEEEEEECCCc--EEEEE
Q 004404 704 TGFQFAPGSSSEVLVTSADSR--IRVVD 729 (755)
Q Consensus 704 tsl~fsPdg~~~L~sgs~Dg~--IrVWD 729 (755)
....|+|+|+.++++...++. |.++|
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~d 380 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQD 380 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEE
Confidence 456899999844444444454 44456
No 267
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.58 E-value=7.3e-07 Score=95.18 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=110.1
Q ss_pred EEEecCC-cEEEEEeCCCcEEEEECCCC----cEEEEeecCCceEEEEEeeCCCcEEEEE---ECCCcEEEEECCCCcEE
Q 004404 572 DLSWSKS-QHLLSSSMDKTVRLWHLSSK----TCLKIFSHSDYVTCIQFNPVDDRYFISG---SLDAKVRIWSIPERQVV 643 (755)
Q Consensus 572 ~L~~spd-~~LaSgs~DgtVrLWDl~t~----~~~~~~~h~~~VtsVafsP~dg~~LaSg---S~DgtVrIWDl~t~~~v 643 (755)
.+..+++ .+|+++..++...++++... +++..+.-...-+++.|.. +......+ +....+.+|....+...
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccCcc
Confidence 3344555 44556666666556665432 3344444444445555555 44444444 34445666666667777
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC
Q 004404 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (755)
Q Consensus 644 ~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg 723 (755)
...+|-.+++.|+|+||+++|+++..|..|++-.......+..+.+ ||..-|..++..++. .|+++|.|+
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--------GH~eFVS~isl~~~~--~LlS~sGD~ 215 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--------GHKEFVSTISLTDNY--LLLSGSGDK 215 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--------ccHhheeeeeeccCc--eeeecCCCC
Confidence 8888999999999999999999999999999988887776666543 899999999999875 589999999
Q ss_pred cEEEEE--CCcceEEe
Q 004404 724 RIRVVD--GIDLVHKF 737 (755)
Q Consensus 724 ~IrVWD--~~~ll~~~ 737 (755)
+||+|| .++++..+
T Consensus 216 tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTC 231 (390)
T ss_pred cEEEEecccCCccccc
Confidence 999999 46655443
No 268
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.55 E-value=7.8e-07 Score=91.78 Aligned_cols=279 Identities=19% Similarity=0.240 Sum_probs=161.1
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeeccc------------CCEEEEEEcCCCC--EEEEEECCCcEEEEeCc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN------------GSIWSIKFSLDGR--YLASAGEDCVIHVWQVV 486 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~------------~~I~sI~fSpdg~--~LaTgs~DGtVrVWdl~ 486 (755)
..++.+|...|+|.+|......--...-..++++|. ..|..|.|..++. .++..+.|.+|++|.+.
T Consensus 38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy 117 (460)
T COG5170 38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY 117 (460)
T ss_pred cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence 356788888899999976533211111123456663 4688999977543 56666789999999985
Q ss_pred CCceeeeeecccccCccccEEEeecCCCC-ceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEe-c
Q 004404 487 ESERKGELLEKQEDGHLNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-Q 564 (755)
Q Consensus 487 t~~~~~~l~~~~~~~~~~~v~~v~~s~dg-~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l-~ 564 (755)
.......- .+.+...-.+|.+ .++.+. .+...+ ++.. ..+.. .++.+.+ .
T Consensus 118 eknlk~va--------~nnls~~~~~~~~g~~~s~~----~l~lpr---------ls~h-----d~iia--a~p~rvyaN 169 (460)
T COG5170 118 EKNLKVVA--------ENNLSDSFHSPMGGPLTSTK----ELLLPR---------LSEH-----DEIIA--AKPCRVYAN 169 (460)
T ss_pred cccchhhh--------ccccccccccccCCCcCCHH----Hhhccc---------cccc-----ceEEE--eccceeccc
Confidence 43211100 0011000111111 111000 000000 0000 01111 1222233 5
Q ss_pred cCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCC-cEEEEe--e-c-----CCceEEEEEeeCCCcEEEEEECCCcEEEE
Q 004404 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSK-TCLKIF--S-H-----SDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (755)
Q Consensus 565 gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~-~~~~~~--~-h-----~~~VtsVafsP~dg~~LaSgS~DgtVrIW 635 (755)
.|.--|.+|.+..+...+..+.|=.|-||++.-. .+.... . | ..-|++..|+|.....|.-.+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 6888899999999966666677889999998743 222222 1 3 34689999999767778778889999999
Q ss_pred ECCCCcEE----Eec-------------cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-eeeccccccccccc-
Q 004404 636 SIPERQVV----DWN-------------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK-LQQKSPINLQNKKK- 696 (755)
Q Consensus 636 Dl~t~~~v----~~~-------------~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~-~~~~~~i~~~~~~~- 696 (755)
|++...+. .++ ..-..|..+.|+++|+++++-+. -+++|||+...+ ++.++++....+..
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHH
Confidence 99853321 110 11146888999999999998764 589999998654 33333221111100
Q ss_pred --cCCCCCe---EEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 697 --RSHQRKI---TGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 697 --~~h~~~V---tsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
......| ..+.|+.+.+ .+++|+......+|-
T Consensus 329 ~d~YEnDaifdkFeisfSgd~~-~v~sgsy~NNfgiyp 365 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDDK-HVLSGSYSNNFGIYP 365 (460)
T ss_pred HhhhhccceeeeEEEEecCCcc-cccccccccceeeec
Confidence 0122333 3466787776 788888887777775
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.4e-05 Score=88.32 Aligned_cols=263 Identities=16% Similarity=0.257 Sum_probs=155.1
Q ss_pred eCCCcEEEEeeCCCCcccceeeeeEeecccCCEEE-EEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCcccc
Q 004404 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS-IKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM 505 (755)
Q Consensus 427 g~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~s-I~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~ 505 (755)
-.+...++|||+.++.+...+.+. . ..-.++- ..||.|++|+|--..+ .|.|++..+...... ..-....
T Consensus 278 d~e~~~l~IWDI~tG~lkrsF~~~--~-~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-----Kslki~g 348 (698)
T KOG2314|consen 278 DNEGQQLIIWDIATGLLKRSFPVI--K-SPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-----KSLKISG 348 (698)
T ss_pred cCCCceEEEEEccccchhcceecc--C-CCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-----cccCCcc
Confidence 456688999999999988777542 1 2233443 5899999999988774 699998765332211 1233455
Q ss_pred EEEeecCCCCceeccccCC-CceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCCcEEEE
Q 004404 506 LLLANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLS 583 (755)
Q Consensus 506 v~~v~~s~dg~~l~~~s~d-~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd~~LaS 583 (755)
|....|+|.+.+|+.=... ..+. ..+ .+..+ +.+.+++..-|.-.=..|.|..++..++
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~p-----arv--------------tL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNIP-----ARV--------------TLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred ccCcccCCCcceEEEEcccccCCc-----ceE--------------EEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 6677888887776642111 0000 000 01111 1222222222221112244544432222
Q ss_pred -----------EeCCCcEEEEECCCC-cEEEEeecCCceEEEEEeeCCCcEEEEEEC---CCcEEEEECCCC----cEEE
Q 004404 584 -----------SSMDKTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSL---DAKVRIWSIPER----QVVD 644 (755)
Q Consensus 584 -----------gs~DgtVrLWDl~t~-~~~~~~~h~~~VtsVafsP~dg~~LaSgS~---DgtVrIWDl~t~----~~v~ 644 (755)
.+.-..+.|+.++.. -++........|...+|-| .|+.|++-+. ..++.+|.+.+. .++.
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeecc-CCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 122223566666643 3455556788999999999 7887776554 356888887742 1222
Q ss_pred eccCCCCEEEEEEccCCCEEEEE---ECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 645 WNDLHEMVTAACYTPDGQGALVG---SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 645 ~~~~~~~VtsvafSPdG~~LasG---s~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
.+. ....+.+.|+|.|++++++ +..|.+.+||+.......+.. ..| ...+.+.|.|.|+ ++++++.
T Consensus 489 ~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~--------~eh-~~at~veWDPtGR-YvvT~ss 557 (698)
T KOG2314|consen 489 ELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS--------PEH-FAATEVEWDPTGR-YVVTSSS 557 (698)
T ss_pred hhc-ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC--------ccc-cccccceECCCCC-EEEEeee
Confidence 222 2567889999999999885 457889999998533332211 022 3467889999998 7887765
Q ss_pred ------CCcEEEEE
Q 004404 722 ------DSRIRVVD 729 (755)
Q Consensus 722 ------Dg~IrVWD 729 (755)
|.--+||+
T Consensus 558 ~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 558 SWRHKVDNGYRIFT 571 (698)
T ss_pred hhhhccccceEEEE
Confidence 44556666
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.54 E-value=3.5e-05 Score=96.19 Aligned_cols=254 Identities=11% Similarity=0.087 Sum_probs=146.1
Q ss_pred CCcEEEEeCCCcEEEEeeCCCCcccceeeeeE--e------ecccCCEEEEEEcCCCCEEEEEE-CCCcEEEEeCcCCce
Q 004404 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQE--I------QAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESER 490 (755)
Q Consensus 420 s~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~--l------~gH~~~I~sI~fSpdg~~LaTgs-~DGtVrVWdl~t~~~ 490 (755)
...+.++-...++|++|+.........-.... + .++-.....|++.+++..|+.+. ..+.|+++|+.++.
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~- 657 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET- 657 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-
Confidence 34456777788999999876432110000000 0 01223468899999888666654 45789999986653
Q ss_pred eeeeecccc------cC------ccccEEEeecCC-CCceeccccCCCceeeecccccccccccccCcccccceeeecCC
Q 004404 491 KGELLEKQE------DG------HLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD 557 (755)
Q Consensus 491 ~~~l~~~~~------~~------~~~~v~~v~~s~-dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~ 557 (755)
+..+..... .+ ..+.-..+++++ ++.++++...+..+........... .+..+... ....+
T Consensus 658 V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~-----~~~~g 731 (1057)
T PLN02919 658 VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE-----RNLNG 731 (1057)
T ss_pred EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc-----ccCCC
Confidence 222211000 00 011123466677 4555555555554443322211100 00000000 00000
Q ss_pred CceEEeccCCCCEEEEEecCC-c-EEEEEeCCCcEEEEECCCCcEEEEe-------------e-c--------CCceEEE
Q 004404 558 KPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIF-------------S-H--------SDYVTCI 613 (755)
Q Consensus 558 k~i~~l~gH~~~V~~L~~spd-~-~LaSgs~DgtVrLWDl~t~~~~~~~-------------~-h--------~~~VtsV 613 (755)
.. .....-.....|+++|+ + .+++-+.++.|++||+.++...... . + -.....|
T Consensus 732 ~~--~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 732 SS--GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred Cc--cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 00 00011134677999998 4 4556667799999999876532111 0 0 0124688
Q ss_pred EEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC--------------CCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--------------EMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 614 afsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~--------------~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
++++ +++++++-..+++|++||..++.+....... .....|+++++|+.+++-+.++.|++||+.
T Consensus 810 avd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 810 LCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 9999 8899999999999999999888766443211 257889999999988888889999999999
Q ss_pred CCee
Q 004404 680 ENKL 683 (755)
Q Consensus 680 ~~~~ 683 (755)
++..
T Consensus 889 ~~~~ 892 (1057)
T PLN02919 889 KGEA 892 (1057)
T ss_pred CCcc
Confidence 8765
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.51 E-value=6.4e-05 Score=81.78 Aligned_cols=215 Identities=11% Similarity=0.177 Sum_probs=132.8
Q ss_pred ecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEee-cc-----cCCEEEEE-EcC-CCCEEEEEECCCcEEEEeCcCC
Q 004404 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AH-----NGSIWSIK-FSL-DGRYLASAGEDCVIHVWQVVES 488 (755)
Q Consensus 417 ~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~-gH-----~~~I~sI~-fSp-dg~~LaTgs~DGtVrVWdl~t~ 488 (755)
..|++.+++. ..|.|++||..+..+..+-.-..+. .. -.+..-+. |++ +|.+++..|. |...|.+.-.+
T Consensus 275 nsDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 3455565564 4677888988876665443211111 11 11111122 444 7889998886 56666554333
Q ss_pred ceeeeeecccccCccccEEEeecCCCCceeccccCCC-ceeeecccccccccccccCcccccceeeecCCCceEEeccCC
Q 004404 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567 (755)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~-~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~ 567 (755)
-.+ ..++...+....+..++..++.+..++ .+ .+++..+..+..+...-
T Consensus 352 ~~i-------qv~~~~~VrY~r~~~~~e~~vigt~dgD~l-----------------------~iyd~~~~e~kr~e~~l 401 (668)
T COG4946 352 YSI-------QVGKKGGVRYRRIQVDPEGDVIGTNDGDKL-----------------------GIYDKDGGEVKRIEKDL 401 (668)
T ss_pred eeE-------EcCCCCceEEEEEccCCcceEEeccCCceE-----------------------EEEecCCceEEEeeCCc
Confidence 211 122233344444444444444443333 22 45666667777888888
Q ss_pred CCEEEEEecCCcE-EEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCC----cEEEEECCCCc
Q 004404 568 DDVLDLSWSKSQH-LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA----KVRIWSIPERQ 641 (755)
Q Consensus 568 ~~V~~L~~spd~~-LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~Dg----tVrIWDl~t~~ 641 (755)
+.|.++..++++. ++.+-....|.+.|+.++.....-. ..+-|+.++||| ++++||-+--+| .|+++|+.+++
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCe
Confidence 9999999999955 6666666789999999988655443 667899999999 999999887766 48999999888
Q ss_pred EEEeccCCCCEEEEEEccCCCEEE
Q 004404 642 VVDWNDLHEMVTAACYTPDGQGAL 665 (755)
Q Consensus 642 ~v~~~~~~~~VtsvafSPdG~~La 665 (755)
..........=.+-+|.|++++|.
T Consensus 481 iy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 481 IYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred EEEecCCcccccCcccCCCCcEEE
Confidence 765544443334444555554433
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=6.2e-05 Score=85.01 Aligned_cols=156 Identities=12% Similarity=0.064 Sum_probs=94.2
Q ss_pred EEEEEecCCc-EEE-EEeC--CCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC-C--cEEEEECCCCcE
Q 004404 570 VLDLSWSKSQ-HLL-SSSM--DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-A--KVRIWSIPERQV 642 (755)
Q Consensus 570 V~~L~~spd~-~La-Sgs~--DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D-g--tVrIWDl~t~~~ 642 (755)
+....|+|++ .++ +.+. +..|.++|+..++..+...+........|+| |++.|+..+.. + .|.+.|+.+++.
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCe
Confidence 3345577773 333 3333 3468888988777554434444345568999 89877776643 3 578888888877
Q ss_pred EEeccCCCCEEEEEEccCCCEEEEEECC---------CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCC
Q 004404 643 VDWNDLHEMVTAACYTPDGQGALVGSYK---------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (755)
Q Consensus 643 v~~~~~~~~VtsvafSPdG~~LasGs~D---------G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~ 713 (755)
.++...... ...|+|||++|+..... ..|++.|+.++...... .. .......|+|+|+
T Consensus 314 ~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT----------~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 314 EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT----------AN-GVNQFPRFSSDGG 380 (419)
T ss_pred EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC----------CC-CCcCCeEECCCCC
Confidence 554432222 24899999998876543 36888899887654321 11 1223578999998
Q ss_pred eEEEEEECCCc--EEEEE-CCcceEEeec
Q 004404 714 SEVLVTSADSR--IRVVD-GIDLVHKFKG 739 (755)
Q Consensus 714 ~~L~sgs~Dg~--IrVWD-~~~ll~~~~G 739 (755)
..+++....+. |.+.+ .+.....+..
T Consensus 381 ~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 381 SIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred EEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 44444433333 55556 3444444543
No 273
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.50 E-value=1.2e-06 Score=90.40 Aligned_cols=230 Identities=20% Similarity=0.340 Sum_probs=140.5
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc-eeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~-~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~ 533 (755)
....|++|.|...|.||+||...|.|.++.-.... +...+... ..+|. +.-
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~te-FQshe---------~EF------------------ 76 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTE-FQSHE---------LEF------------------ 76 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhh-hcccc---------cch------------------
Confidence 34679999999999999999999999999753322 00111000 00000 000
Q ss_pred ccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCCCc-----------
Q 004404 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT----------- 599 (755)
Q Consensus 534 ~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~~----------- 599 (755)
+ -+..+. -...|..+.|..+ ..++..+.|++|+||.+....
T Consensus 77 ----------D--------------YLkSle-ieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~ 131 (460)
T COG5170 77 ----------D--------------YLKSLE-IEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSD 131 (460)
T ss_pred ----------h--------------hhhhcc-HHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccc
Confidence 0 000000 1234777888765 568889999999999875220
Q ss_pred -------------------------------EEEEe--ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC----cE
Q 004404 600 -------------------------------CLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER----QV 642 (755)
Q Consensus 600 -------------------------------~~~~~--~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~----~~ 642 (755)
+.+.+ .|.--|++|.|+. |...++++ .|=.|.+|++.-- .+
T Consensus 132 ~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnI 209 (460)
T COG5170 132 SFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNI 209 (460)
T ss_pred ccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCCceEE
Confidence 00112 1666788999997 77777665 5788999987542 23
Q ss_pred EEeccCC-----CCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeec------ccccccc-ccccCCCCCeEEEEEc
Q 004404 643 VDWNDLH-----EMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQK------SPINLQN-KKKRSHQRKITGFQFA 709 (755)
Q Consensus 643 v~~~~~~-----~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~------~~i~~~~-~~~~~h~~~Vtsl~fs 709 (755)
+....+. .-|++..|+|.. ..+.-.+..|.|++-|++...+... .++.... .-+.+-...|..+.|+
T Consensus 210 VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs 289 (460)
T COG5170 210 VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFS 289 (460)
T ss_pred EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEc
Confidence 4444443 468999999954 4455577799999999985433211 1111000 0112234568899999
Q ss_pred cCCCeEEEEEECCCcEEEEE---CCcceEEeecCC
Q 004404 710 PGSSSEVLVTSADSRIRVVD---GIDLVHKFKGEN 741 (755)
Q Consensus 710 Pdg~~~L~sgs~Dg~IrVWD---~~~ll~~~~GH~ 741 (755)
++|+ ++++ -.=-+|+||| ...++.+..-|.
T Consensus 290 ~ngr-yIls-RdyltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 290 DNGR-YILS-RDYLTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred CCCc-EEEE-eccceEEEEecccccCCceeechHH
Confidence 9996 4554 4446899999 356777665553
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.50 E-value=8.3e-07 Score=94.76 Aligned_cols=88 Identities=24% Similarity=0.482 Sum_probs=74.7
Q ss_pred CceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEe--ecCCceEEEEEeeCCCcEEEEEECCCcEEE
Q 004404 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (755)
Q Consensus 558 k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~--~h~~~VtsVafsP~dg~~LaSgS~DgtVrI 634 (755)
.+...+-||-.-+++++|+|| .+++++..|..||+-....--.+..| +|...|..++.-+ +..|++++.|++|++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRL 219 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEE
Confidence 344456799999999999998 88999999999999888776666665 5999999999986 567999999999999
Q ss_pred EECCCCcEEEecc
Q 004404 635 WSIPERQVVDWND 647 (755)
Q Consensus 635 WDl~t~~~v~~~~ 647 (755)
||+.+++.+....
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999998775443
No 275
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=2.2e-05 Score=87.13 Aligned_cols=227 Identities=14% Similarity=0.188 Sum_probs=134.8
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCC--EEEE-----EECCCcEEEEeCcCCceeeeeecccccC
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR--YLAS-----AGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~--~LaT-----gs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
-...|.+|+...-+ ...-.-|...|..+.+||-+. .+|+ .|.-..|+||.+........+.. ..-
T Consensus 144 v~nev~f~~~~~f~------~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~--ksF 215 (566)
T KOG2315|consen 144 VSNEVQFYDLGSFK------TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVAN--KSF 215 (566)
T ss_pred hcceEEEEecCCcc------ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhh--ccc
Confidence 34566777765411 111123778899999999643 4443 35556899998863221111100 000
Q ss_pred ccccEEEeecCCCCceeccc---cCCCceeeecccccccccccccCcccccc--eeeecCCCceEEeccCCCCEEEEEec
Q 004404 502 HLNMLLLANGSPEPTSLSPK---HLDNHLEKKRRGRSINRKSLSLDHMVVPE--TVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~---s~d~~i~~~~~~~~~~~~s~s~d~~~~~~--~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
....-..+.|.+-++.|+.- ..|..- ...+... .+..+.+.....--...++|.++.|+
T Consensus 216 Fkadkvqm~WN~~gt~LLvLastdVDktn----------------~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~ 279 (566)
T KOG2315|consen 216 FKADKVQMKWNKLGTALLVLASTDVDKTN----------------ASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWS 279 (566)
T ss_pred cccceeEEEeccCCceEEEEEEEeecCCC----------------ccccccceEEEEEecCceEEEecCCCCCceEEEEC
Confidence 11111234455544433221 111100 0000000 12222222222222346899999999
Q ss_pred CCc-E--EEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC---CcEEEEECCCCcEEEeccCCC
Q 004404 577 KSQ-H--LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD---AKVRIWSIPERQVVDWNDLHE 650 (755)
Q Consensus 577 pd~-~--LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D---gtVrIWDl~t~~~v~~~~~~~ 650 (755)
|++ . ++-|-+=-+|.|||++ +.++..| ..++=+++-|+| .|++|+.++.+ |.|.|||+.+.+++......
T Consensus 280 ~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~- 355 (566)
T KOG2315|consen 280 PSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA- 355 (566)
T ss_pred CCCCEEEEEEecccceEEEEcCC-CCEeEeC-CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccC-
Confidence 984 2 5566778899999987 4444444 467778999999 89988887764 78999999997776544332
Q ss_pred CEEEEEEccCCCEEEEEEC------CCcEEEEECCCCee
Q 004404 651 MVTAACYTPDGQGALVGSY------KGSCHLYNTSENKL 683 (755)
Q Consensus 651 ~VtsvafSPdG~~LasGs~------DG~I~lwDl~~~~~ 683 (755)
.-+-+.|+|||++|++++. |+.++||+.....+
T Consensus 356 ~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 356 NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 3466899999999999875 68899999875443
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.48 E-value=9.3e-05 Score=82.31 Aligned_cols=270 Identities=10% Similarity=0.023 Sum_probs=151.3
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..++.+..++.|..+|..+++..-.+. +.+ .....+. .++..++.++.++.|..+|..+++...+.....
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~---~~~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--- 135 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVD---LDE--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--- 135 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeec---CCC--CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---
Confidence 456777888999999987776532222 111 1011122 246778888899999999999988766542111
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEE-----EEEec
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL-----DLSWS 576 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~-----~L~~s 576 (755)
.+.......++.+++ ...++.+.... ..+++.+..+......+. .....
T Consensus 136 ---~~~~~p~v~~~~v~v-~~~~g~l~a~d----------------------~~tG~~~W~~~~~~~~~~~~~~~sp~~~ 189 (377)
T TIGR03300 136 ---EVLSPPLVANGLVVV-RTNDGRLTALD----------------------AATGERLWTYSRVTPALTLRGSASPVIA 189 (377)
T ss_pred ---eeecCCEEECCEEEE-ECCCCeEEEEE----------------------cCCCceeeEEccCCCceeecCCCCCEEE
Confidence 111000001122222 11222221111 012222222221111100 00111
Q ss_pred CCcEEEEEeCCCcEEEEECCCCcEEEEeecCCc--------eEEEEEee-CCCcEEEEEECCCcEEEEECCCCcEEEecc
Q 004404 577 KSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY--------VTCIQFNP-VDDRYFISGSLDAKVRIWSIPERQVVDWND 647 (755)
Q Consensus 577 pd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~--------VtsVafsP-~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~ 647 (755)
++.++.+..++.|..+|..+++.+.......+ +..+.-+| ..+..++.++.+|.+..||..+++.+-...
T Consensus 190 -~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 190 -DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred -CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence 36788888899999999999987665431100 00111011 034578888899999999999998764333
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEE
Q 004404 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (755)
Q Consensus 648 ~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrV 727 (755)
... ....+ ..+..|++++.+|.++.+|..+++.+..... +.. ..+..... .+. .|++++.+|.|++
T Consensus 269 ~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~------~~~--~~~ssp~i--~g~-~l~~~~~~G~l~~ 334 (377)
T TIGR03300 269 ASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDE------LKY--RQLTAPAV--VGG-YLVVGDFEGYLHW 334 (377)
T ss_pred cCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccc------ccC--CccccCEE--ECC-EEEEEeCCCEEEE
Confidence 222 12222 2467888888999999999999987754310 001 11122222 233 7889999999999
Q ss_pred EE--CCcceEEeecCCc
Q 004404 728 VD--GIDLVHKFKGENY 742 (755)
Q Consensus 728 WD--~~~ll~~~~GH~~ 742 (755)
+| .++++.+++.+..
T Consensus 335 ~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 335 LSREDGSFVARLKTDGS 351 (377)
T ss_pred EECCCCCEEEEEEcCCC
Confidence 99 5888888886654
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.48 E-value=5.9e-05 Score=92.64 Aligned_cols=244 Identities=12% Similarity=0.128 Sum_probs=145.3
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
-...|.+++||||+..||....+++|.+-. .+.+.+.+...............+.|....+.+-.... ...
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~g-K~a------- 189 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAG-KAA------- 189 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchh-hhh-------
Confidence 357899999999999999999999998875 44455555432222222222333344333222211100 000
Q ss_pred cccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeC---C---CcEEEEECCCCcEEEEee-c
Q 004404 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM---D---KTVRLWHLSSKTCLKIFS-H 606 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~---D---gtVrLWDl~t~~~~~~~~-h 606 (755)
+-...... ........+. +...-..|+|-.| .+|++.+. . +.||||+-+ |....+-. -
T Consensus 190 -----a~~~~~p~-------~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 190 -----ARQLRDPT-------VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred -----hhhccCCC-------CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 00000000 0000011122 3445667999998 55666553 2 579999965 66554443 3
Q ss_pred CCceEEEEEeeCCCcEEEEEEC---CCcEEEEECCCCcEEE----eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 607 SDYVTCIQFNPVDDRYFISGSL---DAKVRIWSIPERQVVD----WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~---DgtVrIWDl~t~~~v~----~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
.+--.+++|-| .|++||+.-. ...|.+|.-+..+--. +......|..+.|++|+..||+-..|. |.+|-..
T Consensus 256 ~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 256 DGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred CCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 34456889999 8999988764 3457777744322211 113346899999999999999977555 9999998
Q ss_pred CCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+..-..+..+.+ .....+..+.|+|..+..|.+.+.++.+..++
T Consensus 334 NYHWYLKqei~~------~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 334 NYHWYLKQEIRF------SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CCEEEEEEEEEc------cCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 876544333221 23344555999998877788887777776655
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.43 E-value=6.3e-05 Score=83.65 Aligned_cols=134 Identities=19% Similarity=0.183 Sum_probs=92.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec-cCCC-CEEEE
Q 004404 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHE-MVTAA 655 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~-~~~~-~Vtsv 655 (755)
++.++.++.++.++.||..+++.+........ ..... .+..++.++.+|.|..+|..+++.+-.. .... ...+.
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP 316 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence 47888889999999999999988776653222 22222 4567888889999999999999876333 2222 22222
Q ss_pred EEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEE
Q 004404 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 656 afSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVW 728 (755)
.. .+..|++++.+|.|+++|..+++.+.... .+...+..--...++ .|++++.||.|..|
T Consensus 317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~---------~~~~~~~~sp~~~~~--~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 317 AV--VGGYLVVGDFEGYLHWLSREDGSFVARLK---------TDGSGIASPPVVVGD--GLLVQTRDGDLYAF 376 (377)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE---------cCCCccccCCEEECC--EEEEEeCCceEEEe
Confidence 22 36789999999999999999999887543 222222222222233 58899999998765
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.36 E-value=2.7e-06 Score=86.19 Aligned_cols=107 Identities=15% Similarity=0.221 Sum_probs=80.1
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEe-e-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-
Q 004404 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF-S-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV- 643 (755)
Q Consensus 569 ~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~-~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v- 643 (755)
.|.+++-+|. ..+++|+.||.|-|||.+.......+ . |+.+++.|-|+|.++..|+++++||.+..||..+.-+-
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i 260 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSI 260 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEe
Confidence 3889998885 67889999999999999987544333 3 99999999999999999999999999999998752211
Q ss_pred --------EeccCC----------------CCEEEEEEccCCCEEEEEECCCcEEEEE
Q 004404 644 --------DWNDLH----------------EMVTAACYTPDGQGALVGSYKGSCHLYN 677 (755)
Q Consensus 644 --------~~~~~~----------------~~VtsvafSPdG~~LasGs~DG~I~lwD 677 (755)
.|.... ..|+ .|.--|..|++|+.-+.|++++
T Consensus 261 ~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 261 SNQASVISSWLSGDPVKSRIEITSLLPSRSLSIN--SFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCccccccccccCCcccceEeeeccccccceeee--eeeccCceEEeccccceEEEec
Confidence 111100 1122 2344578899999888888875
No 280
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.36 E-value=1.3e-06 Score=63.69 Aligned_cols=37 Identities=41% Similarity=0.658 Sum_probs=34.6
Q ss_pred eeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEe
Q 004404 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (755)
Q Consensus 448 ~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWd 484 (755)
+.+++++|.++|++|+|+|++.+|+|++.|++|+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3567899999999999999999999999999999997
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.33 E-value=0.0005 Score=71.74 Aligned_cols=174 Identities=11% Similarity=0.092 Sum_probs=117.3
Q ss_pred EEEEEec-CCcEEEEEeCCCcEEEEECCCCcEEEEee------cCCceEEEEEeeCCCcEEEEEECC--------CcEEE
Q 004404 570 VLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKIFS------HSDYVTCIQFNPVDDRYFISGSLD--------AKVRI 634 (755)
Q Consensus 570 V~~L~~s-pd~~LaSgs~DgtVrLWDl~t~~~~~~~~------h~~~VtsVafsP~dg~~LaSgS~D--------gtVrI 634 (755)
...+++. +++.|+.+...+ +.++|..+++....+. .....+.+++.| +|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 5566666 678888888755 4555998886555443 235688999999 89877776644 55777
Q ss_pred EECCCCcEEEeccCCCCEEEEEEccCCCEEEE-EECCCcEEEEECCCCee-eeccccccccccccCCCCCeEEEEEccCC
Q 004404 635 WSIPERQVVDWNDLHEMVTAACYTPDGQGALV-GSYKGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 635 WDl~t~~~v~~~~~~~~VtsvafSPdG~~Las-Gs~DG~I~lwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
++.. ++.......-...+.++|+|+++.|++ -+..+.|..|++..... +.....- .......+..-++++..+|
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF---IDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE---EE-SSSSCEEEEEEEBTTS
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeE---EEcCCCCcCCCcceEcCCC
Confidence 8877 665555555567899999999998765 56678899999864322 1111000 1111222457889999999
Q ss_pred CeEEEEEECCCcEEEEE-CCcceEEeecCCccEEEEEEE
Q 004404 713 SSEVLVTSADSRIRVVD-GIDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 713 ~~~L~sgs~Dg~IrVWD-~~~ll~~~~GH~~~V~sv~fs 750 (755)
. ++++.-..+.|.++| .++++..+.--...+.+++|.
T Consensus 196 ~-l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 196 N-LWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp --EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEE
T ss_pred C-EEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEE
Confidence 6 566666789999999 588888888776678888884
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=3.8e-06 Score=92.11 Aligned_cols=288 Identities=16% Similarity=0.121 Sum_probs=173.0
Q ss_pred HHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEee--ccccccccCccccCCc
Q 004404 332 FEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV--TGHKERRSSDERDTSS 406 (755)
Q Consensus 332 ~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~--~g~~~~~~~~~~~~~~ 406 (755)
+..|.||+..|+.++--.| ..++|.|+||+ +|......-. ++.-++.+ ..|+..
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVK-LWSik~EgD~----------~~tsaCQfTY~aHkk~---------- 786 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVK-LWSIKPEGDE----------IGTSACQFTYQAHKKP---------- 786 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEE-EEEeccccCc----------cccceeeeEhhhccCc----------
Confidence 3789999999999987665 88999999999 9988543211 11112222 222211
Q ss_pred cCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC--CCCE-EEEEECCCcEEEE
Q 004404 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRY-LASAGEDCVIHVW 483 (755)
Q Consensus 407 ~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp--dg~~-LaTgs~DGtVrVW 483 (755)
........ +.-...+-|+-|.+||.--+.+..... .....+++.-|.--+ +... +|-|+...+|+++
T Consensus 787 ----i~~igfL~---~lr~i~ScD~giHlWDPFigr~Laq~~---dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~ 856 (1034)
T KOG4190|consen 787 ----IHDIGFLA---DLRSIASCDGGIHLWDPFIGRLLAQME---DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLF 856 (1034)
T ss_pred ----ccceeeee---ccceeeeccCcceeecccccchhHhhh---cCcccCCCceeEecccCcchheeeeccchhhheee
Confidence 11111111 122445678889999976554432111 112223344444434 3333 4444788999999
Q ss_pred eCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEe
Q 004404 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF 563 (755)
Q Consensus 484 dl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l 563 (755)
|....+-..++..-...+....+.+++..+.|..++.+-..+.+.+.. ..+++.+..+
T Consensus 857 DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD----------------------aR~G~vINsw 914 (1034)
T KOG4190|consen 857 DARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILD----------------------ARNGKVINSW 914 (1034)
T ss_pred ecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEe----------------------cCCCceeccC
Confidence 999998888876555566667778888999999998887777664322 2233334444
Q ss_pred ccCCCCEEEEEecCCcEEEEEeCCCcEEE-EECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC--
Q 004404 564 QGHLDDVLDLSWSKSQHLLSSSMDKTVRL-WHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-- 639 (755)
Q Consensus 564 ~gH~~~V~~L~~spd~~LaSgs~DgtVrL-WDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-- 639 (755)
..-.-+...++--.++.|+....|.++-+ |..-.+......+ ...+.. |...-|.-|+++.....+.+|--..
T Consensus 915 rpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepah---flqsvgpSLV~a~~Gn~lgVYad~a~~ 991 (1034)
T KOG4190|consen 915 RPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH---FLQSVGPSLVTAQNGNILGVYADSAEL 991 (1034)
T ss_pred CcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh---hhhccCceeEEeccCcEEEEEecchhh
Confidence 43334444455444577888888889888 8776665544443 222222 2222355677777666777774211
Q ss_pred -----CcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 004404 640 -----RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (755)
Q Consensus 640 -----~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~l 675 (755)
-..++-....+..++++.-|-..-+++|...|.|.+
T Consensus 992 ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 992 HAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 111222344577889999998878888888888876
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.29 E-value=2.2e-06 Score=104.92 Aligned_cols=164 Identities=16% Similarity=0.236 Sum_probs=131.2
Q ss_pred eccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC
Q 004404 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (755)
Q Consensus 563 l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t 639 (755)
++.|-..|.++.-+|. .+.++|+.||.|++|....++.+..+. .+..|+.+.|+- .|+.+..+..||.+.+|.+..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCC
Confidence 3445567888888886 789999999999999999998888875 558899999998 899999999999999999997
Q ss_pred CcEEEeccCCCCEEEEEEccCCCEEEEE---ECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEE
Q 004404 640 RQVVDWNDLHEMVTAACYTPDGQGALVG---SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (755)
Q Consensus 640 ~~~v~~~~~~~~VtsvafSPdG~~LasG---s~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L 716 (755)
.....+..|......+.|-. ..++++ +.++.+.+||.--........ ..|.+.++.+++.|..+ .|
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--------~~H~~gaT~l~~~P~~q-ll 2351 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--------TCHDGGATVLAYAPKHQ-LL 2351 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--------eecCCCceEEEEcCcce-EE
Confidence 76778888888888888874 566664 357889999975332221111 38999999999999987 89
Q ss_pred EEEECCCcEEEEEC--CcceEEee
Q 004404 717 LVTSADSRIRVVDG--IDLVHKFK 738 (755)
Q Consensus 717 ~sgs~Dg~IrVWD~--~~ll~~~~ 738 (755)
++||.+|.|+|||. .++++.|+
T Consensus 2352 isggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred EecCCcCcEEEeehHHHHHHHHhh
Confidence 99999999999994 44554444
No 284
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=7.7e-05 Score=82.63 Aligned_cols=242 Identities=18% Similarity=0.219 Sum_probs=148.9
Q ss_pred cccCCEEEEEEcCCCCEEEEEECC-----------CcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceecccc
Q 004404 454 AHNGSIWSIKFSLDGRYLASAGED-----------CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH 522 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTgs~D-----------GtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s 522 (755)
.|.+ |.-+.|||+.+||+|-+.- ..++|||+.+|...+.+... ...........|+.|..+++--.
T Consensus 248 ~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~--~~~~~~WP~frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 248 YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI--KSPYLKWPIFRWSHDDKYFARMT 324 (698)
T ss_pred cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc--CCCccccceEEeccCCceeEEec
Confidence 3664 8889999999999998642 57899999999988877532 22233344678888888776543
Q ss_pred CCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeC-----CCcEEEEECC
Q 004404 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM-----DKTVRLWHLS 596 (755)
Q Consensus 523 ~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~-----DgtVrLWDl~ 596 (755)
.++... .... ....+..+.+ .-..|....|+|. +.||--.. -..+-|..+.
T Consensus 325 ~~sisI-yEtp-----------------sf~lld~Ksl-----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evP 381 (698)
T KOG2314|consen 325 GNSISI-YETP-----------------SFMLLDKKSL-----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVP 381 (698)
T ss_pred cceEEE-EecC-----------------ceeeeccccc-----CCccccCcccCCCcceEEEEcccccCCcceEEEEecC
Confidence 332211 1000 0001111111 2245788889997 44442221 1346677777
Q ss_pred CCcEEEEee-cCCceEEEEEeeCCCcEEEEEE----------CCCcEEEEECCCCc-EEEeccCCCCEEEEEEccCCCEE
Q 004404 597 SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS----------LDAKVRIWSIPERQ-VVDWNDLHEMVTAACYTPDGQGA 664 (755)
Q Consensus 597 t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS----------~DgtVrIWDl~t~~-~v~~~~~~~~VtsvafSPdG~~L 664 (755)
+++.+++-. ++-.=..+-|-. .|++|+.-- .=..+.|+.++... ++........|...+|-|.|..+
T Consensus 382 s~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF 460 (698)
T KOG2314|consen 382 SKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKF 460 (698)
T ss_pred ccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeE
Confidence 777666654 333333455655 666666521 11236677776655 34667788899999999999877
Q ss_pred EEEEC---CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE---ECCCcEEEEEC
Q 004404 665 LVGSY---KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT---SADSRIRVVDG 730 (755)
Q Consensus 665 asGs~---DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg---s~Dg~IrVWD~ 730 (755)
++-+. ..++.+|.+++......+. +. -.....+.+.|+|.|+ +++++ |..|.+.++|+
T Consensus 461 ~vi~g~~~k~tvsfY~~e~~~~~~~lV-----k~--~dk~~~N~vfwsPkG~-fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 461 AVISGNTVKNTVSFYAVETNIKKPSLV-----KE--LDKKFANTVFWSPKGR-FVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred EEEEccccccceeEEEeecCCCchhhh-----hh--hcccccceEEEcCCCc-EEEEEEecccccceEEEec
Confidence 76432 4578999888522211111 11 1224567899999998 55554 66889999994
No 285
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.28 E-value=2.5e-06 Score=96.45 Aligned_cols=175 Identities=17% Similarity=0.284 Sum_probs=122.0
Q ss_pred EEEEEecCC---cEEEEEeCCCcEEEEECCC--CcEEEEe--ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc-
Q 004404 570 VLDLSWSKS---QHLLSSSMDKTVRLWHLSS--KTCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ- 641 (755)
Q Consensus 570 V~~L~~spd---~~LaSgs~DgtVrLWDl~t--~~~~~~~--~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~- 641 (755)
|-++.|+|. .+-++......-.+|++.. ...+..+ +|...|+.+.|+|.....+++++.|-.|..||++...
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 334455553 3333333334456787653 2333333 4999999999999888999999999999999998854
Q ss_pred E-EEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 642 V-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 642 ~-v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
+ ..+..-+.....|+|+-....+++.+....|++||++.+.-... .+++|...|+++.|..-....+++.+
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~--------s~K~~vs~vn~~~fnr~~~s~~~s~~ 221 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC--------SLKGHVSSVNSIDFNRFKYSEIMSSS 221 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceE--------EecccceeeehHHHhhhhhhhhcccC
Confidence 2 24555566778899998777777788889999999998765432 24578899999999875555799999
Q ss_pred CCCcEEEEECC---cceEEeecCCccEEEEEEEEE
Q 004404 721 ADSRIRVVDGI---DLVHKFKGENYVQYMVCIVLF 752 (755)
Q Consensus 721 ~Dg~IrVWD~~---~ll~~~~GH~~~V~sv~fs~F 752 (755)
.|++|++||-. +.-.....-...|+-.++.||
T Consensus 222 ~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 222 NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF 256 (1081)
T ss_pred CCCceeeecccccccccceeccccCcceecccccc
Confidence 99999999921 111111222334666666665
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.28 E-value=0.00038 Score=75.99 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=115.4
Q ss_pred EecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCC-cEEEEECCCCcEEEeccCCCCE
Q 004404 574 SWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA-KVRIWSIPERQVVDWNDLHEMV 652 (755)
Q Consensus 574 ~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~Dg-tVrIWDl~t~~~v~~~~~~~~V 652 (755)
+..+..+++..|. |.+.|.+...+-.+ .+++...|.-..+.- +++-++.|..|| .+-|+|..+++.......-+.|
T Consensus 328 a~~~Gd~ia~VSR-GkaFi~~~~~~~~i-qv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I 404 (668)
T COG4946 328 AVVNGDYIALVSR-GKAFIMRPWDGYSI-QVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNI 404 (668)
T ss_pred ccCCCcEEEEEec-CcEEEECCCCCeeE-EcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccce
Confidence 3334467777776 66777776555444 445677788888877 777899999999 8999999999988888888999
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC----cEEEE
Q 004404 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS----RIRVV 728 (755)
Q Consensus 653 tsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg----~IrVW 728 (755)
.++..+|+|++++++.....|.++|+.++.....- +...+-|+.+.|+|++. +++-+--+| .|+|+
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~id---------kS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Ikly 474 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID---------KSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLY 474 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec---------ccccceeEEEEEcCCce-eEEEecCcceeeeeEEEE
Confidence 99999999999999999999999999999876532 25667899999999997 788775554 58899
Q ss_pred E
Q 004404 729 D 729 (755)
Q Consensus 729 D 729 (755)
|
T Consensus 475 d 475 (668)
T COG4946 475 D 475 (668)
T ss_pred e
Confidence 8
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.25 E-value=0.00011 Score=75.01 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=107.8
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEECCCC--cEEEEe--ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-
Q 004404 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV- 643 (755)
Q Consensus 570 V~~L~~spd-~~LaSgs~DgtVrLWDl~t~--~~~~~~--~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v- 643 (755)
+..++++++ ..+++.+....|.+|.+... ..+.+. ...+.-.+..|+. ....||+++.||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccch
Confidence 778899998 56777888889999988753 223322 2556667889998 8899999999999999999874322
Q ss_pred -----EeccCCCCEEEEEEccCC--CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCC-CCeEEEEEccCCCeE
Q 004404 644 -----DWNDLHEMVTAACYTPDG--QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSSE 715 (755)
Q Consensus 644 -----~~~~~~~~VtsvafSPdG--~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~-~~Vtsl~fsPdg~~~ 715 (755)
..-.|.+.+..+.|+|.| .+|+..-.-+.+.+.|++++...+.+.+.. .+...|. ..|.+-.|+.++. .
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~--d~~~~~~tq~ifgt~f~~~n~-s 316 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD--DVERKHNTQHIFGTNFNNENE-S 316 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc--cccccccccccccccccCCCc-c
Confidence 122356789999999976 467777778899999999988776654322 2233444 4488888988876 3
Q ss_pred EEEEECC
Q 004404 716 VLVTSAD 722 (755)
Q Consensus 716 L~sgs~D 722 (755)
+.+.+.+
T Consensus 317 ~~v~~e~ 323 (344)
T KOG4532|consen 317 NDVKNEL 323 (344)
T ss_pred cccccch
Confidence 5554443
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=6.2e-05 Score=86.07 Aligned_cols=220 Identities=15% Similarity=0.201 Sum_probs=154.3
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC------------CCEEEEEECCCcEEEEeCcCCceeeeeecc
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD------------GRYLASAGEDCVIHVWQVVESERKGELLEK 497 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd------------g~~LaTgs~DGtVrVWdl~t~~~~~~l~~~ 497 (755)
...|-+-|.. .++.+|.+.-|+..|+.|.|.|- .-+||++...|.|.+||+.....+
T Consensus 34 hslV~VVDs~-----s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~------ 102 (1062)
T KOG1912|consen 34 HSLVSVVDSR-----SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI------ 102 (1062)
T ss_pred CceEEEEehh-----hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh------
Confidence 3445555544 45566788899999999999762 125778888899999998544322
Q ss_pred cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC
Q 004404 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp 577 (755)
..+..|..+|.+++|-+
T Consensus 103 ---------------------------------------------------------------~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 103 ---------------------------------------------------------------NWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred ---------------------------------------------------------------hhhcCCCcchhheeeee
Confidence 22345667788888876
Q ss_pred C-----cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-------CcEEE
Q 004404 578 S-----QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-------RQVVD 644 (755)
Q Consensus 578 d-----~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-------~~~v~ 644 (755)
. ..|+.-..-.+|.+|+..+|+.+.... ......|+.+.|.|.+.|..-+..|.|.+-+.-. ++..+
T Consensus 120 ~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q 199 (1062)
T KOG1912|consen 120 ARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ 199 (1062)
T ss_pred ccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence 3 457777777899999999999988886 5566778999998888888888888887776421 22222
Q ss_pred ec-cCCC-------------------------CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccC
Q 004404 645 WN-DLHE-------------------------MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRS 698 (755)
Q Consensus 645 ~~-~~~~-------------------------~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~ 698 (755)
.. .|.. ....++|+|.-+.++.......+.++|++-...+....++
T Consensus 200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie-------- 271 (1062)
T KOG1912|consen 200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE-------- 271 (1062)
T ss_pred EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec--------
Confidence 11 1110 1223578998877777778899999999988887766542
Q ss_pred CCCCeEEEEEccCCCe-EEEEEECCCcEEEEECCc
Q 004404 699 HQRKITGFQFAPGSSS-EVLVTSADSRIRVVDGID 732 (755)
Q Consensus 699 h~~~Vtsl~fsPdg~~-~L~sgs~Dg~IrVWD~~~ 732 (755)
.+.+.-+.+.|+.+. .|+..-.||.+.+|-..+
T Consensus 272 -r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 272 -RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred -cCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 344455666776532 677778899999997443
No 289
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.23 E-value=0.00026 Score=78.06 Aligned_cols=254 Identities=16% Similarity=0.203 Sum_probs=152.9
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCc---------------EEEEeCcCCceeeee
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCV---------------IHVWQVVESERKGEL 494 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGt---------------VrVWdl~t~~~~~~l 494 (755)
...|.+|+-....... .+. | ..|.-+.|+|.++||.|.+.... +.|||+.++..+..+
T Consensus 52 ~~~V~~~~g~~~~~l~-----~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf 124 (561)
T COG5354 52 AAGVECWGGPSKAKLV-----RFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF 124 (561)
T ss_pred ccceEEccccchhhee-----eee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec
Confidence 3446667655443111 111 3 45899999999999999976554 899999998877766
Q ss_pred ecccccCccccEE-EeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEE
Q 004404 495 LEKQEDGHLNMLL-LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (755)
Q Consensus 495 ~~~~~~~~~~~v~-~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L 573 (755)
...... ...+ .+.|+-+..+++--... .+.+.... ..+...+.+.++ ...|...
T Consensus 125 ~~~~q~---~~~Wp~~k~s~~D~y~ARvv~~-sl~i~e~t-------------------~n~~~~p~~~lr--~~gi~dF 179 (561)
T COG5354 125 NGISQP---YLGWPVLKFSIDDKYVARVVGS-SLYIHEIT-------------------DNIEEHPFKNLR--PVGILDF 179 (561)
T ss_pred cccCCc---ccccceeeeeecchhhhhhccC-eEEEEecC-------------------CccccCchhhcc--ccceeeE
Confidence 322111 1112 34444443333322111 11000000 001112222222 2457888
Q ss_pred EecCC---cEEE-----EEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEE-----------CCCcEE
Q 004404 574 SWSKS---QHLL-----SSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS-----------LDAKVR 633 (755)
Q Consensus 574 ~~spd---~~La-----Sgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS-----------~DgtVr 633 (755)
.|+|. ..|+ ....+.++++|.+..+..+.+-. ....=..+.|++ .+++|++-- ....+.
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEE
Confidence 88885 2233 34567899999998777665543 233334577888 677665532 134588
Q ss_pred EEECCCCcEEEeccCCCCEEEEEEccCCCEEEE--EECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccC
Q 004404 634 IWSIPERQVVDWNDLHEMVTAACYTPDGQGALV--GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (755)
Q Consensus 634 IWDl~t~~~v~~~~~~~~VtsvafSPdG~~Las--Gs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd 711 (755)
|+++....+.......++|...+|.|.++.+++ |-..-.+.++|++.. +...+ ....=+.+.|+|.
T Consensus 259 l~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~-----------Pe~~rNT~~fsp~ 326 (561)
T COG5354 259 LLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF-----------PEQKRNTIFFSPH 326 (561)
T ss_pred EEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec-----------CCcccccccccCc
Confidence 888886555444467899999999998877666 457888999999887 33322 2233345679999
Q ss_pred CCeEEEEEECC---CcEEEEE
Q 004404 712 SSSEVLVTSAD---SRIRVVD 729 (755)
Q Consensus 712 g~~~L~sgs~D---g~IrVWD 729 (755)
+. ++++++-| |.|-+||
T Consensus 327 ~r-~il~agF~nl~gni~i~~ 346 (561)
T COG5354 327 ER-YILFAGFDNLQGNIEIFD 346 (561)
T ss_pred cc-EEEEecCCccccceEEec
Confidence 87 66666554 6789999
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.23 E-value=0.00047 Score=71.49 Aligned_cols=207 Identities=18% Similarity=0.222 Sum_probs=126.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCcCCc--eeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccc
Q 004404 461 SIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (755)
Q Consensus 461 sI~fSpdg~~LaTgs~DGtVrVWdl~t~~--~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~ 538 (755)
.++.+.+|++||.- .|..|-|=.....- .+.+.. ......-.-..++|+||+++++.+...+.+........
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcq--VpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~--- 75 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQ--VPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS--- 75 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEe--cCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc---
Confidence 46677889877765 55666665443221 111110 12233344567899999999999998888854332210
Q ss_pred cccccCcccccceeeecCCCceEEecc-CCCCEEEEEecCC-------cEEEEEeCCCcEEEEECCC-----CcEEEEee
Q 004404 539 KSLSLDHMVVPETVFALSDKPICSFQG-HLDDVLDLSWSKS-------QHLLSSSMDKTVRLWHLSS-----KTCLKIFS 605 (755)
Q Consensus 539 ~s~s~d~~~~~~~v~~~s~k~i~~l~g-H~~~V~~L~~spd-------~~LaSgs~DgtVrLWDl~t-----~~~~~~~~ 605 (755)
.++.+.... .+.+ -...|-.|.|.+. -.|++-...|.++=|-+.. .+..+.|.
T Consensus 76 ------------~lf~I~p~~--~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs 141 (282)
T PF15492_consen 76 ------------ELFVIPPAM--SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS 141 (282)
T ss_pred ------------eeEEcCccc--ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE
Confidence 111111100 0111 1244666666542 2577888888888777532 24445553
Q ss_pred ----cCCceEEEEEeeCCCcEEEEEECC-C----------cEEEEECCCCcE---------------------EE-----
Q 004404 606 ----HSDYVTCIQFNPVDDRYFISGSLD-A----------KVRIWSIPERQV---------------------VD----- 644 (755)
Q Consensus 606 ----h~~~VtsVafsP~dg~~LaSgS~D-g----------tVrIWDl~t~~~---------------------v~----- 644 (755)
+...|+++.++| ..++|+.|+.. . -+..|.+-++.+ .+
T Consensus 142 f~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~ 220 (282)
T PF15492_consen 142 FSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK 220 (282)
T ss_pred ecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee
Confidence 577899999999 66777766532 1 255665432210 00
Q ss_pred e----ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccc
Q 004404 645 W----NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 645 ~----~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
+ ......|..|.+||||+.||+...+|.|.+|++.+-+++..+.
T Consensus 221 ~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 221 FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 0 1124579999999999999999999999999999988777654
No 291
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.22 E-value=0.00039 Score=76.63 Aligned_cols=261 Identities=13% Similarity=0.155 Sum_probs=148.1
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEE-EEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEe
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIW-SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~-sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v 509 (755)
..+.+||..++.+...+..+. .....| -+.|+-+.+|+|=-.. ..++|+++ +.... +.. ...-....+...
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~---q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~-t~n~~-~~p--~~~lr~~gi~dF 179 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGIS---QPYLGWPVLKFSIDDKYVARVVG-SSLYIHEI-TDNIE-EHP--FKNLRPVGILDF 179 (561)
T ss_pred CceeEEeccCceeEeeccccC---Ccccccceeeeeecchhhhhhcc-CeEEEEec-CCccc-cCc--hhhccccceeeE
Confidence 378999998887765554322 222356 6889988887765533 46999997 33211 110 011112344555
Q ss_pred ecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEEEEecCCc-EEEE----
Q 004404 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKSQ-HLLS---- 583 (755)
Q Consensus 510 ~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L~~spd~-~LaS---- 583 (755)
.++|.+..- .+..+....... ... ..++.+. ...+.+..-....=..+.|.+.+ +|+.
T Consensus 180 sisP~~n~~-------~la~~tPEk~~k------pa~---~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 180 SISPEGNHD-------ELAYWTPEKLNK------PAM---VRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred EecCCCCCc-------eEEEEccccCCC------CcE---EEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 566653110 011111000000 000 0122221 11111111111122346666652 2221
Q ss_pred Ee-------CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEE--CCCcEEEEECCCCcEEEeccCCCCEEE
Q 004404 584 SS-------MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS--LDAKVRIWSIPERQVVDWNDLHEMVTA 654 (755)
Q Consensus 584 gs-------~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS--~DgtVrIWDl~t~~~v~~~~~~~~Vts 654 (755)
-. ....++|+++....+.......++|..++|.| .++.|++.+ .+..+.++|++.. +........=+.
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT 320 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNT 320 (561)
T ss_pred eeecccceeccceEEEEeecccccceeccccccceeeeecc-cCCceeEEecccccceeecccccc--eEEecCCccccc
Confidence 11 12458888887544443335689999999999 777666554 7888999999887 444555566678
Q ss_pred EEEccCCCEEEEEECC---CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE------CCCcE
Q 004404 655 ACYTPDGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS------ADSRI 725 (755)
Q Consensus 655 vafSPdG~~LasGs~D---G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs------~Dg~I 725 (755)
+.|+|.++++++++-+ |.+-+||..+........ ......-+.|+|+++ ++.+.. .|..|
T Consensus 321 ~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~----------~~~n~s~~~wspd~q-F~~~~~ts~k~~~Dn~i 389 (561)
T COG5354 321 IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF----------NGLNTSYCDWSPDGQ-FYDTDTTSEKLRVDNSI 389 (561)
T ss_pred ccccCcccEEEEecCCccccceEEeccCCceEEEEEe----------ecCCceEeeccCCce-EEEecCCCcccccCcce
Confidence 8999999999996654 779999998876654210 112234567999998 555542 38899
Q ss_pred EEEE
Q 004404 726 RVVD 729 (755)
Q Consensus 726 rVWD 729 (755)
.|||
T Consensus 390 ~l~~ 393 (561)
T COG5354 390 KLWD 393 (561)
T ss_pred EEEE
Confidence 9999
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.20 E-value=0.0021 Score=66.95 Aligned_cols=139 Identities=13% Similarity=0.172 Sum_probs=92.5
Q ss_pred CEEEEEecCCcEEEEEeCC---------CcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEE-EEECCCcEEEEECC
Q 004404 569 DVLDLSWSKSQHLLSSSMD---------KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLDAKVRIWSIP 638 (755)
Q Consensus 569 ~V~~L~~spd~~LaSgs~D---------gtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~La-SgS~DgtVrIWDl~ 638 (755)
..+++++.|++.|..+... +.|..++.. ++.......-...+.|+|+| +++.|+ +-+..+.|..|++.
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEE
T ss_pred CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC-cchheeecccccceeEEEecc
Confidence 3667777777655544432 457777776 56555555667789999999 887665 56778889999885
Q ss_pred C--CcEE---Eecc---CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEc-
Q 004404 639 E--RQVV---DWND---LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA- 709 (755)
Q Consensus 639 t--~~~v---~~~~---~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs- 709 (755)
. ..+. .+.. .....-.+++..+|++.++....+.|.+++.. ++++..+.+ . ...+++++|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~--------p-~~~~t~~~fgg 234 (246)
T PF08450_consen 165 ADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL--------P-VPRPTNCAFGG 234 (246)
T ss_dssp TTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---------S-SSSEEEEEEES
T ss_pred ccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC--------C-CCCEEEEEEEC
Confidence 3 2121 1212 22348899999999888887789999999998 777765542 2 3479999994
Q ss_pred cCCCeEEEEE
Q 004404 710 PGSSSEVLVT 719 (755)
Q Consensus 710 Pdg~~~L~sg 719 (755)
|+...+++|+
T Consensus 235 ~~~~~L~vTt 244 (246)
T PF08450_consen 235 PDGKTLYVTT 244 (246)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEe
Confidence 6656444443
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=7.5e-06 Score=85.94 Aligned_cols=139 Identities=12% Similarity=0.199 Sum_probs=105.3
Q ss_pred CCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-----CcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC
Q 004404 566 HLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSS-----KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (755)
Q Consensus 566 H~~~V~~L~~sp-d~~LaSgs~DgtVrLWDl~t-----~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t 639 (755)
..++|.++.|.. ++.++.|...|.|...|++. +.+.+.+-|.+.|++++....++.+|++.+.+|+|++||++-
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 456788899887 48899999999999999986 467888889999999998776788999999999999999987
Q ss_pred CcE---EEec-cCCC--CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEc
Q 004404 640 RQV---VDWN-DLHE--MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (755)
Q Consensus 640 ~~~---v~~~-~~~~--~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (755)
-++ +... +|-. ...-+-..+....+++++.|...|||.+..++++.+++++. ......+.+++|.
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~-----s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY-----SASEVDIPSVAFD 401 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC-----ccccccccceehh
Confidence 555 4333 3322 12223345556688889999999999999999998876432 2233355566654
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.00054 Score=77.45 Aligned_cols=160 Identities=8% Similarity=0.073 Sum_probs=105.1
Q ss_pred CCCceEEeccCCCCEEEEEecCCc-E-EEEEeC---CCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEE-EECC
Q 004404 556 SDKPICSFQGHLDDVLDLSWSKSQ-H-LLSSSM---DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFIS-GSLD 629 (755)
Q Consensus 556 s~k~i~~l~gH~~~V~~L~~spd~-~-LaSgs~---DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaS-gS~D 629 (755)
.+...+.+.... .+....|+|++ . ++..+. ...|+++|+.+++........+.+....|+| |++.|+. .+.+
T Consensus 177 dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~ 254 (419)
T PRK04043 177 TLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPK 254 (419)
T ss_pred CCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccC
Confidence 333333333333 67889999994 2 554343 3569999999888776666666677788999 8876654 3333
Q ss_pred --CcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECC-C--cEEEEECCCCeeeeccccccccccccCCCCCeE
Q 004404 630 --AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (755)
Q Consensus 630 --gtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~D-G--~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (755)
..|.++|+.++....+...........|+|||+.|+..+.. + .|+++|+.+++...... .+. .
T Consensus 255 g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--------~g~--~-- 322 (419)
T PRK04043 255 GQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--------HGK--N-- 322 (419)
T ss_pred CCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--------CCC--c--
Confidence 46888898888877666555545567899999988876642 3 58888998877644211 111 1
Q ss_pred EEEEccCCCeEEEEEECC--------CcEEEEE
Q 004404 705 GFQFAPGSSSEVLVTSAD--------SRIRVVD 729 (755)
Q Consensus 705 sl~fsPdg~~~L~sgs~D--------g~IrVWD 729 (755)
...|+|+|+.++++.... ..|.+.|
T Consensus 323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d 355 (419)
T PRK04043 323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIS 355 (419)
T ss_pred CceECCCCCEEEEEEcCCCcccCCCCcEEEEEE
Confidence 248999999444444332 3677777
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=8.2e-06 Score=85.63 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=118.5
Q ss_pred EecCC--cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC-----cEEEec
Q 004404 574 SWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-----QVVDWN 646 (755)
Q Consensus 574 ~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~-----~~v~~~ 646 (755)
+|+=+ ++-++.+.+-.|-|-++.++.. +.|...+.|.+++|.. .++++..|...|.|..+|++.+ .+...+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc-cccccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 55543 4446777778899999887653 4455788899999998 7899999999999999999875 355667
Q ss_pred cCCCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEE--ccCCCeEEEEEECCC
Q 004404 647 DLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF--APGSSSEVLVTSADS 723 (755)
Q Consensus 647 ~~~~~VtsvafSP-dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f--sPdg~~~L~sgs~Dg 723 (755)
-|...|+++..-. ++++|.+.+.+|+|.+||++.-+..... ....+|...-.-+-+ .+... .+++++.|.
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V------~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDc 368 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSV------MQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDC 368 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccce------eeeecccccccccccccccccc-eEEEccCee
Confidence 7888999998776 7899999999999999999876662211 123466554444433 34333 788899999
Q ss_pred cEEEEE--CCcceEEeecC
Q 004404 724 RIRVVD--GIDLVHKFKGE 740 (755)
Q Consensus 724 ~IrVWD--~~~ll~~~~GH 740 (755)
..|||. .+.++.+++..
T Consensus 369 ytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEEEecccCceeeccCCC
Confidence 999998 46777766543
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.04 E-value=0.00085 Score=82.67 Aligned_cols=247 Identities=16% Similarity=0.214 Sum_probs=147.6
Q ss_pred ccCCEEEEEEcCCCCEEEEEEC---C---CcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 455 HNGSIWSIKFSLDGRYLASAGE---D---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~---D---GtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
+.+.-..|+|-.||+|+|+.+. . +.||||+-+ ++.... .....+.-..++|.|.|.++++......-
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st-----SE~v~gLe~~l~WrPsG~lIA~~q~~~~~- 280 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST-----SEPVDGLEGALSWRPSGNLIASSQRLPDR- 280 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec-----cccCCCccCCccCCCCCCEEEEEEEcCCC-
Confidence 5556678999999999998875 2 579999864 332111 12333444578999999998886431100
Q ss_pred eecccccccccccccCcccccceeeecCCCceEE----eccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCc--EE
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICS----FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CL 601 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~----l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~--~~ 601 (755)
... ..|.-.+-.... +......|..|.|+++ ..|+..-. ..|+||-..+.. ..
T Consensus 281 -------~~V------------vFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~-~~vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 281 -------HDV------------VFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE-DRVQLWTRSNYHWYLK 340 (928)
T ss_pred -------cEE------------EEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec-CCceEEEeeCCEEEEE
Confidence 000 112212211111 1234567899999999 45555544 459999988753 22
Q ss_pred EEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEEC----CCC----------------cEEE---------------
Q 004404 602 KIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI----PER----------------QVVD--------------- 644 (755)
Q Consensus 602 ~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl----~t~----------------~~v~--------------- 644 (755)
+.+. ....+..+.|+|.+...|...+.+|.+..++. ..+ ..+.
T Consensus 341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~ 420 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSS 420 (928)
T ss_pred EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhc
Confidence 3332 44456669999976777888887777766543 111 1111
Q ss_pred -eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeee----c--cccccc---cccccCCCCCeEEEEEccCCCe
Q 004404 645 -WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ----K--SPINLQ---NKKKRSHQRKITGFQFAPGSSS 714 (755)
Q Consensus 645 -~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~----~--~~i~~~---~~~~~~h~~~Vtsl~fsPdg~~ 714 (755)
.......|..++|++++..+++-..||.|.+|......... . ..+... ..........+..+.|..+..
T Consensus 421 ~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 499 (928)
T PF04762_consen 421 YELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDT- 499 (928)
T ss_pred eEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCE-
Confidence 12334689999999999889999999999999865433221 0 000000 001112345678888887765
Q ss_pred EEEEEECC---CcEEEEE
Q 004404 715 EVLVTSAD---SRIRVVD 729 (755)
Q Consensus 715 ~L~sgs~D---g~IrVWD 729 (755)
.++....+ ..|.+++
T Consensus 500 ~~~~~~~~~~~~~i~~~~ 517 (928)
T PF04762_consen 500 LLVLSDSDSNQSKIVLVD 517 (928)
T ss_pred EEEEEecCcccceEEEEE
Confidence 44444443 5677776
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.02 E-value=0.0013 Score=67.60 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=88.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEe-ecC----CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCC-C
Q 004404 578 SQHLLSSSMDKTVRLWHLSSKTCLKIF-SHS----DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE-M 651 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t~~~~~~~-~h~----~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~-~ 651 (755)
++.++.+..++.|+.+|..+|+.+..+ ... .......... +++.++.+..++.|..+|+.+++++....... .
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 466777778889999999999998884 311 1223333333 57888889989999999999999874433322 1
Q ss_pred ----------EEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 652 ----------VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 652 ----------VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
+..-....++ .++++..++.+.-+|+.+++.+.... ...+..+ ..+.+. .|++++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-----------~~~~~~~-~~~~~~-~l~~~~~ 220 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-----------ISGIYSL-PSVDGG-TLYVTSS 220 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-----------SS-ECEC-EECCCT-EEEEEET
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-----------CCCccCC-ceeeCC-EEEEEeC
Confidence 1122222344 77788878864444999998653211 1122221 344555 6777779
Q ss_pred CCcEEEEEC
Q 004404 722 DSRIRVVDG 730 (755)
Q Consensus 722 Dg~IrVWD~ 730 (755)
++.|..||.
T Consensus 221 ~~~l~~~d~ 229 (238)
T PF13360_consen 221 DGRLYALDL 229 (238)
T ss_dssp TTEEEEEET
T ss_pred CCEEEEEEC
Confidence 999999993
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.02 E-value=1.2e-05 Score=58.47 Aligned_cols=37 Identities=35% Similarity=0.724 Sum_probs=34.9
Q ss_pred CceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEE
Q 004404 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (755)
Q Consensus 558 k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWD 594 (755)
+++.++.+|...|++|+|+|+ .+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 567899999999999999998 8999999999999997
No 299
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.0027 Score=67.75 Aligned_cols=231 Identities=12% Similarity=0.162 Sum_probs=136.8
Q ss_pred CCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC
Q 004404 477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS 556 (755)
Q Consensus 477 DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s 556 (755)
+.-|.+|++.+......++ ...........++++++.+.|.+....+. .....+...+ ...
T Consensus 15 s~gI~v~~ld~~~g~l~~~--~~v~~~~nptyl~~~~~~~~LY~v~~~~~--------~ggvaay~iD---------~~~ 75 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL--QLVAELGNPTYLAVNPDQRHLYVVNEPGE--------EGGVAAYRID---------PDD 75 (346)
T ss_pred CCceEEEEEeCcccccchh--hhccccCCCceEEECCCCCEEEEEEecCC--------cCcEEEEEEc---------CCC
Confidence 5679999997543322221 11233344556778888876666533311 0000111111 011
Q ss_pred CCc--eEEeccCCCCEEEEEecCCc-EEEEEeC-CCcEEEEECCC-Cc---EEEEeecCCc----------eEEEEEeeC
Q 004404 557 DKP--ICSFQGHLDDVLDLSWSKSQ-HLLSSSM-DKTVRLWHLSS-KT---CLKIFSHSDY----------VTCIQFNPV 618 (755)
Q Consensus 557 ~k~--i~~l~gH~~~V~~L~~spd~-~LaSgs~-DgtVrLWDl~t-~~---~~~~~~h~~~----------VtsVafsP~ 618 (755)
++. +........+-+.++.++++ +|+++.. -|.|.++-+.. |. .+..+.|.+. +....|.|
T Consensus 76 G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP- 154 (346)
T COG2706 76 GRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP- 154 (346)
T ss_pred CeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-
Confidence 111 11111112233778999985 6666654 68999999976 43 3344557666 89999999
Q ss_pred CCcEEEEEEC-CCcEEEEECCCCcEEEe----ccCCCCEEEEEEccCCCEEEEEEC-CCcEEEEECCCC--eeeeccccc
Q 004404 619 DDRYFISGSL-DAKVRIWSIPERQVVDW----NDLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSEN--KLQQKSPIN 690 (755)
Q Consensus 619 dg~~LaSgS~-DgtVrIWDl~t~~~v~~----~~~~~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~~--~~~~~~~i~ 690 (755)
++++|++... -.+|.+|++..+.+... ........-|+|+|+++++++.+. +++|.+|..... ++.....+.
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~ 234 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID 234 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec
Confidence 9998888764 35799999998776422 234457889999999999988654 899999998873 322211111
Q ss_pred cccccccCCCCCeEEEEEccCCCeEEEEE-ECCCcEEEEE
Q 004404 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRIRVVD 729 (755)
Q Consensus 691 ~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg-s~Dg~IrVWD 729 (755)
.....+ .-......|..+|+|+ +|.++ -....|-+|.
T Consensus 235 tlP~dF-~g~~~~aaIhis~dGr-FLYasNRg~dsI~~f~ 272 (346)
T COG2706 235 TLPEDF-TGTNWAAAIHISPDGR-FLYASNRGHDSIAVFS 272 (346)
T ss_pred cCcccc-CCCCceeEEEECCCCC-EEEEecCCCCeEEEEE
Confidence 111122 2345677888999998 45444 2233666665
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=3.6e-06 Score=96.72 Aligned_cols=200 Identities=16% Similarity=0.238 Sum_probs=139.4
Q ss_pred eeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCce
Q 004404 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (755)
Q Consensus 448 ~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i 527 (755)
....|..|+..-+|++|+-+.++|+.|+..|.|+++++.++...... ..|...+..+.-+.+|.++.+.+....-
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-----cccccccccccccCCcceeeeeccccCc
Confidence 33557789999999999999999999999999999999998765553 6778888888888887766554322110
Q ss_pred eeecccccccccccccCcccccceeeec--CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEe
Q 004404 528 EKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (755)
Q Consensus 528 ~~~~~~~~~~~~s~s~d~~~~~~~v~~~--s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~ 604 (755)
...+|.+ ...+.++|.+ -.++.|+.. ..-+.|..-..+.|||+.++..+.++
T Consensus 1168 ---------------------lsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1168 ---------------------LSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred ---------------------hHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 0022332 2344444443 457788875 33344555567999999998777663
Q ss_pred -e----cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 605 -S----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 605 -~----h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
. ..-.-++..|+| +..+++ .|| .+||++..+.+..+..-..-..-.|+|+|..+++-+ -|||++
T Consensus 1223 lt~~~~~~y~~n~a~FsP-~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSP-CDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMR 1291 (1516)
T ss_pred cCcchhhhhhccccccCC-CcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhH
Confidence 2 222347889999 777665 455 479999876654443333344557999999999877 499999
Q ss_pred CCeeeeccc
Q 004404 680 ENKLQQKSP 688 (755)
Q Consensus 680 ~~~~~~~~~ 688 (755)
+.++++..+
T Consensus 1292 TF~lLh~VP 1300 (1516)
T KOG1832|consen 1292 TFKLLHSVP 1300 (1516)
T ss_pred HHHHHhcCc
Confidence 998877543
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.99 E-value=0.0031 Score=67.20 Aligned_cols=229 Identities=18% Similarity=0.165 Sum_probs=134.1
Q ss_pred EEeCCCcEEEEeeCCCCcccceee---eeEeecccCCEEEEEEcCCCCEEEEEEC-----CCcEEEEeCc-CCceeeeee
Q 004404 425 FHGQERVRVRQYGKSCKDLTALYK---CQEIQAHNGSIWSIKFSLDGRYLASAGE-----DCVIHVWQVV-ESERKGELL 495 (755)
Q Consensus 425 ~sg~~dg~Vriwd~~~~~~~~~~~---~q~l~gH~~~I~sI~fSpdg~~LaTgs~-----DGtVrVWdl~-t~~~~~~l~ 495 (755)
+.--..-...+||..+++...... -.-|.|| -.||+||++|+|.=. .|.|-|||.. ..+++.++.
T Consensus 22 faRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~ 95 (305)
T PF07433_consen 22 FARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP 95 (305)
T ss_pred EEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec
Confidence 333334445566666665443222 1335566 469999999998743 5899999998 666777764
Q ss_pred cccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccc-eeeecCCCceEE--e--ccCCCCE
Q 004404 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE-TVFALSDKPICS--F--QGHLDDV 570 (755)
Q Consensus 496 ~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~-~v~~~s~k~i~~--l--~gH~~~V 570 (755)
..-...| .+.+.|++..|+.+..+ .......++ ..++++.+-... .+...+++.+.+ + .-|.-.|
T Consensus 96 s~GIGPH-----el~l~pDG~tLvVANGG-I~Thpd~GR----~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 96 SHGIGPH-----ELLLMPDGETLVVANGG-IETHPDSGR----AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCCcChh-----hEEEcCCCCEEEEEcCC-CccCcccCc----eecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 3222222 34467888555554322 111111111 111122211111 223456666655 4 3488889
Q ss_pred EEEEecCCcEEEEEeCCC--------cEEEEECCCCcEEEEee--------cCCceEEEEEeeCCCcEEE-EEECCCcEE
Q 004404 571 LDLSWSKSQHLLSSSMDK--------TVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVDDRYFI-SGSLDAKVR 633 (755)
Q Consensus 571 ~~L~~spd~~LaSgs~Dg--------tVrLWDl~t~~~~~~~~--------h~~~VtsVafsP~dg~~La-SgS~DgtVr 633 (755)
..|++.+++.++.+.... -|-+++. ++.+..+. -..+|-+|++++ ++.+++ |+=.-+.+.
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEE
Confidence 999999998888776532 2444443 33233332 458999999999 777665 455567899
Q ss_pred EEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 004404 634 IWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (755)
Q Consensus 634 IWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~l 675 (755)
+||..+++++...... .+..++-.+++ ++++. ..|.+..
T Consensus 243 ~~d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ss-G~G~~~~ 281 (305)
T PF07433_consen 243 VWDAATGRLLGSVPLP-DACGVAPTDDG-FLVSS-GQGQLIR 281 (305)
T ss_pred EEECCCCCEeeccccC-ceeeeeecCCc-eEEeC-CCccEEE
Confidence 9999999988766544 35666766666 44444 3455433
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=7.4e-05 Score=80.96 Aligned_cols=240 Identities=16% Similarity=0.127 Sum_probs=154.8
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC-CCcEEEEeCcCCceeeeeecccc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~-DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
..+..+++-|+.++.|.+..-. ...-+..+..|-+.|.+++.+.++.++.|.+. |..++++|+++......+.....
T Consensus 20 a~fiiqASlDGh~KFWkKs~is--GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l 97 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRIS--GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL 97 (558)
T ss_pred hheEEeeecchhhhhcCCCCcc--ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC
Confidence 4667899999999999876423 23333456789999999999999999999877 99999999976554322211111
Q ss_pred cCccccEEEeecCCCC--ceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC
Q 004404 500 DGHLNMLLLANGSPEP--TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg--~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp 577 (755)
.+ .+.......+. .+.+.....+.+....... -..+....-.-|..+|.++.+.+
T Consensus 98 Pg---~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~--------------------d~~q~~~fkklH~sPV~~i~y~q 154 (558)
T KOG0882|consen 98 PG---FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFG--------------------DFCQDGYFKKLHFSPVKKIRYNQ 154 (558)
T ss_pred CC---ceEEecCCCCeeeeEEeecccCCCcEEECCcC--------------------CcCccceecccccCceEEEEeec
Confidence 11 11111111111 1111111111111110000 01123334456899999999998
Q ss_pred C-cEEEEEeCCCcEEEEECCC------CcEEEEe----------ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC
Q 004404 578 S-QHLLSSSMDKTVRLWHLSS------KTCLKIF----------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (755)
Q Consensus 578 d-~~LaSgs~DgtVrLWDl~t------~~~~~~~----------~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~ 640 (755)
. ..+++....|.|.-|.... .+....+ +.....+++.|+| ++..+.+-..|.+|++++.+++
T Consensus 155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccc
Confidence 7 6678888889999998762 1111111 1456789999999 9999999999999999999998
Q ss_pred cEEEeccCC----------------------------------CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 641 QVVDWNDLH----------------------------------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 641 ~~v~~~~~~----------------------------------~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
++++.+... ..-+.++|...|++|+-|+.=| |++.++.++.....
T Consensus 234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 755332110 1245678889999999887544 78888888776654
Q ss_pred c
Q 004404 687 S 687 (755)
Q Consensus 687 ~ 687 (755)
+
T Consensus 313 ~ 313 (558)
T KOG0882|consen 313 L 313 (558)
T ss_pred e
Confidence 3
No 303
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.94 E-value=0.00064 Score=69.61 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=107.9
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecC--CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc-EE-E--eccCCCCE
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHS--DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VV-D--WNDLHEMV 652 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~h~--~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~-~v-~--~~~~~~~V 652 (755)
-.+..++.|.++++.++..+...... |. -.++++.+++ +++++++.+....|..|.+.... .+ . .......-
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~g 206 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHG 206 (344)
T ss_pred cceeeccCCcceeEEEEecCccccee-eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCc
Confidence 34778899999999998755433222 32 3388999999 99999999999999999987632 22 2 22334456
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCe-EEEEEECCCcEEEEEC
Q 004404 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS-EVLVTSADSRIRVVDG 730 (755)
Q Consensus 653 tsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~-~L~sgs~Dg~IrVWD~ 730 (755)
.+..|+.....+|++..||++.|||++........ .......|.+.|..+.|++.|.. +|+..-.-+.+.|.|.
T Consensus 207 F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~----~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 207 FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE----ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred eeeeeccCcceEEEEecCCcEEEEEecccccchhh----hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 67889999999999999999999999976544322 11334569999999999987653 4555555678899984
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.91 E-value=0.0053 Score=68.86 Aligned_cols=134 Identities=10% Similarity=0.081 Sum_probs=89.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-CC-CCEEEE
Q 004404 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LH-EMVTAA 655 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-~~-~~Vtsv 655 (755)
++.++.++.++.+.-+|..+++.+........ ..+.. .+..|+.++.+|.|..+|..+++.+-... .. ....+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP 331 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence 47788888999999999999987766542221 12222 45677788899999999999988653222 11 112222
Q ss_pred EEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeE-EEEEccCCCeEEEEEECCCcEEEEE
Q 004404 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT-GFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 656 afSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt-sl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.+ .+.+|++++.+|.|+.+|..+++.+....+ ....+. ...+ .++ .|++++.||.|..++
T Consensus 332 ~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~---------~~~~~~s~P~~-~~~--~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 332 VL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV---------DSSGFLSEPVV-ADD--KLLIQARDGTVYAIT 392 (394)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc---------CCCcceeCCEE-ECC--EEEEEeCCceEEEEe
Confidence 22 256888999999999999999988765432 111122 1222 233 688999999988765
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.84 E-value=0.0077 Score=67.56 Aligned_cols=148 Identities=11% Similarity=0.029 Sum_probs=94.5
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCc--------eEEEEEee-CCCcEEEEEECCCcEEEEECCCCcEEEeccCC
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY--------VTCIQFNP-VDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~--------VtsVafsP-~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~ 649 (755)
+.++.++.++.+..+|..+++.+..+....+ ...+..+| ..+..++.++.+|.+..+|+.+++.+-.....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 5677788899999999998887665431110 11111122 12456777788999999999999876433322
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
. ...+. ..+..|++++.+|.++.+|..+++.+..... . .+ ....+.... ++ +|++++.||.|.++|
T Consensus 286 ~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~------~-~~-~~~~sp~v~-~g--~l~v~~~~G~l~~ld 351 (394)
T PRK11138 286 S-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD------L-LH-RLLTAPVLY-NG--YLVVGDSEGYLHWIN 351 (394)
T ss_pred C-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc------c-CC-CcccCCEEE-CC--EEEEEeCCCEEEEEE
Confidence 2 11222 2466888888999999999999987654221 0 11 111222222 33 688999999999999
Q ss_pred --CCcceEEeecC
Q 004404 730 --GIDLVHKFKGE 740 (755)
Q Consensus 730 --~~~ll~~~~GH 740 (755)
+++++.+++-.
T Consensus 352 ~~tG~~~~~~~~~ 364 (394)
T PRK11138 352 REDGRFVAQQKVD 364 (394)
T ss_pred CCCCCEEEEEEcC
Confidence 57777776643
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.83 E-value=0.0023 Score=77.14 Aligned_cols=258 Identities=15% Similarity=0.127 Sum_probs=146.1
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
-.+.|.++.|..+..-++.+..+|.|.+-|.++.... + .....+.|.++.|+||...++.......+..-....
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--i----vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE--I----VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee--e----eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence 3468999999999998999999999999988765422 1 123456788999999988887766655443322211
Q ss_pred -cccccccccCcccccceeeecCCCceEEeccCC---------------------CCEEEEEecCCc-EEEEE----eCC
Q 004404 535 -SINRKSLSLDHMVVPETVFALSDKPICSFQGHL---------------------DDVLDLSWSKSQ-HLLSS----SMD 587 (755)
Q Consensus 535 -~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~---------------------~~V~~L~~spd~-~LaSg----s~D 587 (755)
.+....+..+.......+-.--++.-..|.|.. ..=+.|+|--++ ++++. -.+
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 111111111111000000000011111111111 112458898886 55552 234
Q ss_pred -CcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEE---ECCCcEEEEECCC---CcEEEeccCC-CCEEEEEEc
Q 004404 588 -KTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISG---SLDAKVRIWSIPE---RQVVDWNDLH-EMVTAACYT 658 (755)
Q Consensus 588 -gtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSg---S~DgtVrIWDl~t---~~~v~~~~~~-~~VtsvafS 658 (755)
++|++||.+ |.+-.+-. ....=.+++|-| .|.++++- ..|+.|.+|.-+. +....-.... ..+..++|+
T Consensus 221 ~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred ceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeec
Confidence 899999977 43322222 334456889999 88888875 3456799998543 2222112222 349999999
Q ss_pred cCCCEEEE---EECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 659 PDGQGALV---GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 659 PdG~~Las---Gs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.++..|++ ......|++|-+.+.....+..+.++ .... +.|+|.....|.+-..+|.+.++|
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~-------~~~~--~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS-------QKAL--LMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecCeEEEEEEEEecc-------cccc--ccccCCCceeEEEEecCCcEEEEE
Confidence 99999998 44445599999988765443322211 1111 566665443344444455544444
No 307
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.83 E-value=0.0018 Score=67.19 Aligned_cols=169 Identities=14% Similarity=0.210 Sum_probs=108.0
Q ss_pred CEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee--------cCCceEEEEEeeCC-----CcEEEEEECCCcEEE
Q 004404 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVD-----DRYFISGSLDAKVRI 634 (755)
Q Consensus 569 ~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~--------h~~~VtsVafsP~d-----g~~LaSgS~DgtVrI 634 (755)
.=.-++|+|| ..||.+...|+|+++|+....+ ..+. ....|..+.|.+.. ...|++-..+|.++=
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 3467999999 6678888899999999875433 2332 33567777787522 225677778888887
Q ss_pred EECCCC---cEE-----Eecc-CCCCEEEEEEccCCCEEEEEECC-C----------cEEEEECCCCeeeecccc----c
Q 004404 635 WSIPER---QVV-----DWND-LHEMVTAACYTPDGQGALVGSYK-G----------SCHLYNTSENKLQQKSPI----N 690 (755)
Q Consensus 635 WDl~t~---~~v-----~~~~-~~~~VtsvafSPdG~~LasGs~D-G----------~I~lwDl~~~~~~~~~~i----~ 690 (755)
|-+..+ ... .+.. ....|+++.|+|..+.|++|+.. . -+.-|.+-++........ .
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~ 203 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD 203 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence 775332 111 1112 34689999999998888886531 1 356676654433221100 0
Q ss_pred c------------ccc----cccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEeec
Q 004404 691 L------------QNK----KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKG 739 (755)
Q Consensus 691 ~------------~~~----~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~~G 739 (755)
. ... ........|..+..+|+|. +|++...+|.|.+|+. -.+..+++-
T Consensus 204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhhcccch
Confidence 0 000 0112356799999999998 8999999999999994 344444443
No 308
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.81 E-value=0.0084 Score=67.97 Aligned_cols=143 Identities=17% Similarity=0.273 Sum_probs=96.3
Q ss_pred CCEEEEEecCC--cEEEE----EeCCCc----EEEEECCCCcEE----EEeecCCceEEEEEeeCCCcEEEEEECCCcEE
Q 004404 568 DDVLDLSWSKS--QHLLS----SSMDKT----VRLWHLSSKTCL----KIFSHSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (755)
Q Consensus 568 ~~V~~L~~spd--~~LaS----gs~Dgt----VrLWDl~t~~~~----~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVr 633 (755)
....++.|+.. ..+.+ .+.+|. -++|++...+.. ..+.....|.|++++| +.+.|+.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 44567777753 33333 233443 346666654322 2334889999999999 999999999999999
Q ss_pred EEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccc----c---ccccccccCCCCCeEEE
Q 004404 634 IWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP----I---NLQNKKKRSHQRKITGF 706 (755)
Q Consensus 634 IWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~----i---~~~~~~~~~h~~~Vtsl 706 (755)
+||...+... .....-.++.++|+|+|..+++|+..|.+.+||+.-......+. . .+.....-.+...+..+
T Consensus 285 LyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~i 363 (545)
T PF11768_consen 285 LYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHI 363 (545)
T ss_pred EEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhhee
Confidence 9998776433 33555678999999999999999999999999987543221110 0 00111222456677888
Q ss_pred EEccCC
Q 004404 707 QFAPGS 712 (755)
Q Consensus 707 ~fsPdg 712 (755)
.|.+..
T Consensus 364 qW~~~~ 369 (545)
T PF11768_consen 364 QWAPAP 369 (545)
T ss_pred EeccCC
Confidence 888543
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.81 E-value=5.3e-05 Score=77.08 Aligned_cols=149 Identities=13% Similarity=0.218 Sum_probs=95.8
Q ss_pred CCcEEEEEeCCCcEEEEECCCCcE-EEEee--cCCceEEEEEeeCCCcEEEEEE-----CCCcEEEEECCCCcEE-Eecc
Q 004404 577 KSQHLLSSSMDKTVRLWHLSSKTC-LKIFS--HSDYVTCIQFNPVDDRYFISGS-----LDAKVRIWSIPERQVV-DWND 647 (755)
Q Consensus 577 pd~~LaSgs~DgtVrLWDl~t~~~-~~~~~--h~~~VtsVafsP~dg~~LaSgS-----~DgtVrIWDl~t~~~v-~~~~ 647 (755)
++..++++..||.+-+++.+.... ...+. |.+.. +.++.. .++++.++. .-+..++|+++..+.. ....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceee-cccEEecCCcceEeeccceeeeccccccccccccc
Confidence 357799999999999998765211 11111 21111 111111 234444332 1234556666543322 1111
Q ss_pred CCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEE
Q 004404 648 LHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (755)
Q Consensus 648 ~~~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~Ir 726 (755)
....|++++-+|.. ..+++|+.||.+-+||.+...... ..++.|...|..+-|+|..+..|++++.||.+.
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~--------S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw 249 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV--------SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLW 249 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH--------HHHHHhhhhhhheeccCCCchheeEecCCCcEE
Confidence 22349999999965 566678999999999999874333 225689999999999999888999999999999
Q ss_pred EEEC-CcceE
Q 004404 727 VVDG-IDLVH 735 (755)
Q Consensus 727 VWD~-~~ll~ 735 (755)
.||. ++++.
T Consensus 250 ~wdas~~~l~ 259 (319)
T KOG4714|consen 250 HWDASTTFLS 259 (319)
T ss_pred EEcCCCceEE
Confidence 9994 34443
No 310
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.80 E-value=0.00096 Score=75.36 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=81.5
Q ss_pred cCCceEEEEEeeCCCcEEEEE----ECCCc----EEEEECCCCcEE----EeccCCCCEEEEEEccCCCEEEEEECCCcE
Q 004404 606 HSDYVTCIQFNPVDDRYFISG----SLDAK----VRIWSIPERQVV----DWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSg----S~Dgt----VrIWDl~t~~~v----~~~~~~~~VtsvafSPdG~~LasGs~DG~I 673 (755)
......++.|+-..+..+.+. +.+|. -.+|++...++. ..+..+..+.+++++|+...|+.|+.||.|
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI 283 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence 344446667765444455543 22333 346776555432 445778899999999999999999999999
Q ss_pred EEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 674 ~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.+||...+.-... ...-.++.++|+|+|. ++++|+.-|.|.+||
T Consensus 284 iLyD~~~~~t~~~-----------ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 284 ILYDTTRGVTLLA-----------KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFD 327 (545)
T ss_pred EEEEcCCCeeeee-----------eecccceEEEEcCCCc-EEEEEcCCceEEEEE
Confidence 9999977643322 2334578899999998 899999999999999
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00081 Score=77.84 Aligned_cols=140 Identities=13% Similarity=0.201 Sum_probs=104.6
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCC-----CcEEEEEECCCcEEEEECC---CCcEEEeccCCC
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVD-----DRYFISGSLDAKVRIWSIP---ERQVVDWNDLHE 650 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~d-----g~~LaSgS~DgtVrIWDl~---t~~~v~~~~~~~ 650 (755)
.++++|+.||+|.|-.+-+.+...++....++.+|+++| + .+.|++|+.-| +.++.-+ ....+......+
T Consensus 84 ey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~P-d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG 161 (846)
T KOG2066|consen 84 EYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHP-DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG 161 (846)
T ss_pred ceEEEecCCCcEEEeeccCCccceeEecCCcceeEEecc-chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCcc
Confidence 689999999999999999999998898899999999999 5 46899999888 7777632 233334556678
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 651 ~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+|.++.|. |.++|-++.+| |++||+..++.+..++.+.+. .-...--..+.|.++. .|+.| .-.+|+|..
T Consensus 162 ~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~---~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~ 231 (846)
T KOG2066|consen 162 PIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQS---VRPELFPPHLHWQDED--RLVIG-WGDSVKICS 231 (846)
T ss_pred ceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCC---CCcccCCCceEecCCC--eEEEe-cCCeEEEEE
Confidence 99999997 77999888665 899999999888766533211 1112223467788875 35555 444777776
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0027 Score=74.11 Aligned_cols=212 Identities=14% Similarity=0.172 Sum_probs=134.9
Q ss_pred eeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCC-CEEEEEECCCc-----EEEEeCc
Q 004404 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCV-----IHVWQVV 486 (755)
Q Consensus 413 ~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGt-----VrVWdl~ 486 (755)
.+++...+...++.|+.+|.|.+++-. ....+.+++|...|...-+.-++ .+|++-+.|+. |+||+++
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSS------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccc------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 667777777788999999999988754 22236677888874444444444 68999888764 8999986
Q ss_pred CCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccC
Q 004404 487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566 (755)
Q Consensus 487 t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH 566 (755)
..+.... +..+... .++. ..+...
T Consensus 101 k~~~n~s---------P~c~~~~-----------------------------------------ri~~------~~np~~ 124 (933)
T KOG2114|consen 101 KVDKNNS---------PQCLYEH-----------------------------------------RIFT------IKNPTN 124 (933)
T ss_pred ccCCCCC---------cceeeee-----------------------------------------eeec------cCCCCC
Confidence 4321100 0000000 0000 001123
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEECC--CCcE-EEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC
Q 004404 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS--SKTC-LKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (755)
Q Consensus 567 ~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~--t~~~-~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~ 640 (755)
..++.+++.+.+ ..+++|-.+|.|..+.-+ ..+- ...+. ...+|+.+++.. ++..++.+..-..|.+|.+..+
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecCC
Confidence 456778888877 789999999999998532 1111 12222 667999999998 7777455555678999999865
Q ss_pred cE-EE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccc
Q 004404 641 QV-VD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 641 ~~-v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
.+ .. .-.+...+.+.++++....+++++ ...+++|+....++...+.
T Consensus 204 ~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 204 TPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 52 23 334445788888887555455554 4679999998777665543
No 313
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.76 E-value=0.012 Score=63.48 Aligned_cols=271 Identities=15% Similarity=0.135 Sum_probs=147.1
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC----------CCcEEEEeCcCCceeeeeeccccc
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE----------DCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~----------DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
.+|.++|...+++...... +. .-.+..+|+++.+++++. .-.|.+||..+.....++......
T Consensus 17 ~rv~viD~d~~k~lGmi~~----g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT----GF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE----ES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCCCcEEEEeec----cc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 5788888877765444321 22 223668999998887542 347999999998887776422210
Q ss_pred Cc--cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEEEEecC
Q 004404 501 GH--LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 501 ~~--~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L~~sp 577 (755)
.. .........+.+++.+..... .....+ .+.++. .+.+.++.- ..+..+-=+.
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N~------------------TPa~SV---tVVDl~~~kvv~ei~~--PGC~~iyP~~ 146 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQNF------------------TPATSV---TVVDLAAKKVVGEIDT--PGCWLIYPSG 146 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEEE------------------SSSEEE---EEEETTTTEEEEEEEG--TSEEEEEEEE
T ss_pred hheecccccceEEccCCcEEEEEcc------------------CCCCeE---EEEECCCCceeeeecC--CCEEEEEecC
Confidence 10 011112334444444332211 000000 222222 222332221 1122221122
Q ss_pred CcEEEEEeCCCcEEEEECC-CCcEEEEee-----cCCceE-EEEEeeCCCcEEEEEECCCcEEEEECCCCcEE---Eecc
Q 004404 578 SQHLLSSSMDKTVRLWHLS-SKTCLKIFS-----HSDYVT-CIQFNPVDDRYFISGSLDAKVRIWSIPERQVV---DWND 647 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~-t~~~~~~~~-----h~~~Vt-sVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v---~~~~ 647 (755)
+..|.+-+.||++....+. .|+..++.. ..+++. .-++.. .+..++--+..|.|+-.|+...... .|..
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 3568899999999999887 455543321 222222 223444 4556666889999999998776533 1211
Q ss_pred CC----------CCEEEEEEccCCCEEEEEEC---CC-------cEEEEECCCCeeeeccccccccccccCCCCCeEEEE
Q 004404 648 LH----------EMVTAACYTPDGQGALVGSY---KG-------SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (755)
Q Consensus 648 ~~----------~~VtsvafSPdG~~LasGs~---DG-------~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (755)
.. +.-.-+++++....|++--+ ++ .|.+||+.+++.+..+.+ ...+.+|+
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----------~~~~~Si~ 295 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----------EHPIDSIA 295 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----------EEEESEEE
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----------CCccceEE
Confidence 10 22344777776656655322 21 388899999999887653 23477899
Q ss_pred EccCCCeEEEEEE-CCCcEEEEE--CCcceEEeecCCc
Q 004404 708 FAPGSSSEVLVTS-ADSRIRVVD--GIDLVHKFKGENY 742 (755)
Q Consensus 708 fsPdg~~~L~sgs-~Dg~IrVWD--~~~ll~~~~GH~~ 742 (755)
.+.+.+.+|++.+ .++.|.||| +++++.++++-..
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 9998877776654 589999999 6888888886543
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.004 Score=72.78 Aligned_cols=160 Identities=18% Similarity=0.294 Sum_probs=107.8
Q ss_pred cEEEEEeCCC-----cEEEEECCC------CcEE---EEee-----cCCceEEEEEeeCCCcEEEEEECCCcEEEEE--C
Q 004404 579 QHLLSSSMDK-----TVRLWHLSS------KTCL---KIFS-----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS--I 637 (755)
Q Consensus 579 ~~LaSgs~Dg-----tVrLWDl~t------~~~~---~~~~-----h~~~VtsVafsP~dg~~LaSgS~DgtVrIWD--l 637 (755)
..|++.+.|+ .|++|+++. ..|+ +.+. ...++.+++.+. +-..+++|-.+|.|..+. +
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcc
Confidence 5677777765 499999863 3455 3333 356789999998 889999999999999884 2
Q ss_pred -CCC--cEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCe
Q 004404 638 -PER--QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (755)
Q Consensus 638 -~t~--~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~ 714 (755)
++. +........++|+.+++..+++.++-...-..|.+|.+....+.. +.+..|...+.+..|++...
T Consensus 157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~--------~~ld~~G~~lnCss~~~~t~- 227 (933)
T KOG2114|consen 157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSL--------KVLDNNGISLNCSSFSDGTY- 227 (933)
T ss_pred hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcce--------eeeccCCccceeeecCCCCc-
Confidence 111 222334556899999999999874444446789999998544111 12346778899999988654
Q ss_pred EEEEEECCCcEEEEEC--CcceEEee-cCCccEEEEEE
Q 004404 715 EVLVTSADSRIRVVDG--IDLVHKFK-GENYVQYMVCI 749 (755)
Q Consensus 715 ~L~sgs~Dg~IrVWD~--~~ll~~~~-GH~~~V~sv~f 749 (755)
.+++++ +.-|.+||+ ...--.|. ||+..+..+.+
T Consensus 228 qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~ 264 (933)
T KOG2114|consen 228 QFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLVFSF 264 (933)
T ss_pred cEEEec-CceEEEEcCCCcceeeeecCCCeEEEEEEec
Confidence 355444 457999994 33334455 78777665554
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.75 E-value=0.00047 Score=80.53 Aligned_cols=119 Identities=16% Similarity=0.226 Sum_probs=90.7
Q ss_pred CceEEeccCCCCEEEEEecCCcEEEEEeC---------CCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEEC
Q 004404 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSM---------DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL 628 (755)
Q Consensus 558 k~i~~l~gH~~~V~~L~~spd~~LaSgs~---------DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~ 628 (755)
+.++++..|++.|.++... .+.|++++. |.-|+|||++..+.+..++-.....-+.|+|.-...+++++.
T Consensus 208 ~~iht~~aHs~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~ 286 (1118)
T KOG1275|consen 208 ETIHTFDAHSGSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQ 286 (1118)
T ss_pred ceeeeeeccccceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEec
Confidence 3466777888888887765 466777764 566999999988777666633333667899966788999999
Q ss_pred CCcEEEEECC---CCc--EEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEE
Q 004404 629 DAKVRIWSIP---ERQ--VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677 (755)
Q Consensus 629 DgtVrIWDl~---t~~--~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwD 677 (755)
.|...+-|.. +.. ..........+.+++++++|+.++.|..+|.|.+|-
T Consensus 287 sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 287 SGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9999999943 321 223344455699999999999999999999999997
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00017 Score=83.28 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=105.5
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC
Q 004404 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL 648 (755)
Q Consensus 569 ~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~ 648 (755)
.+.|++++ +..|+-|..+|.|++++.... ....+.|... .- +|.++++|+.||+|.|..+-+.+.......
T Consensus 41 ~is~~av~-~~~~~~GtH~g~v~~~~~~~~-~~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~~~df 111 (846)
T KOG2066|consen 41 AISCCAVH-DKFFALGTHRGAVYLTTCQGN-PKTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEITQYDF 111 (846)
T ss_pred HHHHHHhh-cceeeeccccceEEEEecCCc-cccccccccc------cc-CCceEEEecCCCcEEEeeccCCccceeEec
Confidence 35555554 578999999999999997643 3444445544 33 899999999999999999999888888888
Q ss_pred CCCEEEEEEccC-----CCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC
Q 004404 649 HEMVTAACYTPD-----GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (755)
Q Consensus 649 ~~~VtsvafSPd-----G~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg 723 (755)
+.++.+++++|+ .+.+++|+..| +.++.-.-....... .+..-.++|.++.|..+ +++-++++|
T Consensus 112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-------~l~~~eG~I~~i~W~g~---lIAWand~G 180 (846)
T KOG2066|consen 112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-------VLSEGEGPIHSIKWRGN---LIAWANDDG 180 (846)
T ss_pred CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-------eeecCccceEEEEecCc---EEEEecCCC
Confidence 999999999998 47899999888 777754321111111 12356789999999864 777777665
Q ss_pred cEEEEEC
Q 004404 724 RIRVVDG 730 (755)
Q Consensus 724 ~IrVWD~ 730 (755)
|+|||+
T Consensus 181 -v~vyd~ 186 (846)
T KOG2066|consen 181 -VKVYDT 186 (846)
T ss_pred -cEEEec
Confidence 899993
No 317
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=0.00065 Score=78.06 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=119.9
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeC-----------CCcEEEEEECCCcEEEEE
Q 004404 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV-----------DDRYFISGSLDAKVRIWS 636 (755)
Q Consensus 569 ~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~-----------dg~~LaSgS~DgtVrIWD 636 (755)
.-.++.|+|.|.|+.|+. ..|.+-|..+.+.++.+. |...|+.|.|.|. ..-+|+++...|.|.+||
T Consensus 17 N~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 17 NRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred cccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 356788999999998887 578999999999999997 9999999999882 123677888889999999
Q ss_pred CCCCcEEEeccCC-CCEEEEEEcc---CC-CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccC
Q 004404 637 IPERQVVDWNDLH-EMVTAACYTP---DG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (755)
Q Consensus 637 l~t~~~v~~~~~~-~~VtsvafSP---dG-~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd 711 (755)
...+..+.++.++ .++..++|-| +. .+|++-..-..+.+|+..+|+...... .......++.+.|-
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~---------ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD---------YSHEILSCFRVDPF 166 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc---------cCCcceeeeeeCCC
Confidence 9998888666655 5788898877 33 566776778899999999999887643 23345566888887
Q ss_pred CCeEEEEEECCCcEEEEE
Q 004404 712 SSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 712 g~~~L~sgs~Dg~IrVWD 729 (755)
....+..-+..|.|.+-+
T Consensus 167 d~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred CcceEEEEccCceEEEEe
Confidence 766777777788887776
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.64 E-value=0.024 Score=60.50 Aligned_cols=234 Identities=14% Similarity=0.149 Sum_probs=147.2
Q ss_pred EEEEEcC-CCCEEEEEECCCc-EEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccccccc
Q 004404 460 WSIKFSL-DGRYLASAGEDCV-IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (755)
Q Consensus 460 ~sI~fSp-dg~~LaTgs~DGt-VrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~ 537 (755)
..++.+| .+..++.+-.-|+ ..+||..+++....+.. ... ....--..|+++|.+|.+...+..- .
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~g--RHFyGHg~fs~dG~~LytTEnd~~~-----g---- 75 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPG--RHFYGHGVFSPDGRLLYTTENDYET-----G---- 75 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCC--CEEecCEEEcCCCCEEEEeccccCC-----C----
Confidence 3577888 5556777766665 67899998887766532 111 1112246789999988886543210 0
Q ss_pred ccccccCcccccceeeecC--CCceEEeccCCCCEEEEEecCCc-EEEEE------------------eCCCcEEEEECC
Q 004404 538 RKSLSLDHMVVPETVFALS--DKPICSFQGHLDDVLDLSWSKSQ-HLLSS------------------SMDKTVRLWHLS 596 (755)
Q Consensus 538 ~~s~s~d~~~~~~~v~~~s--~k~i~~l~gH~~~V~~L~~spd~-~LaSg------------------s~DgtVrLWDl~ 596 (755)
...+ -+|+.. .+.+.+|..|.-.-..|.+.|++ .|+++ .++-.+-+.|..
T Consensus 76 ------~G~I---gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 76 ------RGVI---GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred ------cEEE---EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 0000 344443 35667777777777888888885 55544 233456677788
Q ss_pred CCcEEEEee-----cCCceEEEEEeeCCCcEEEEEECCCc-------EEEEECCCC-cEE-----EeccCCCCEEEEEEc
Q 004404 597 SKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSLDAK-------VRIWSIPER-QVV-----DWNDLHEMVTAACYT 658 (755)
Q Consensus 597 t~~~~~~~~-----h~~~VtsVafsP~dg~~LaSgS~Dgt-------VrIWDl~t~-~~v-----~~~~~~~~VtsvafS 658 (755)
+|+.+.... |...|.-+++.+ ++..++..-..|. |-+++.... +.+ .+...+..+-+|+++
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~ 225 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAAD 225 (305)
T ss_pred CCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEe
Confidence 888777632 677899999998 7766655544332 334433221 111 133456789999999
Q ss_pred cCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 659 PDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 659 PdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+++.++++.+ ..+.+.+||..++.++.... -..+.+++-.+++ +++ ++..|.+....
T Consensus 226 ~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-----------l~D~cGva~~~~~--f~~-ssG~G~~~~~~ 283 (305)
T PF07433_consen 226 RDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-----------LPDACGVAPTDDG--FLV-SSGQGQLIRLS 283 (305)
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCEeeccc-----------cCceeeeeecCCc--eEE-eCCCccEEEcc
Confidence 9998887655 46778999999999987643 3456777777765 444 44445544443
No 319
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00035 Score=75.93 Aligned_cols=215 Identities=14% Similarity=0.170 Sum_probs=140.1
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
|.+-|+.+... -.+++.+++.||.++.|.-.... ..
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is-Gv------------------------------------------ 43 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS-GV------------------------------------------ 43 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCcc-ce------------------------------------------
Confidence 88888887654 45799999999999999632100 00
Q ss_pred cccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcE-EEEEeC-CCcEEEEECCCCcEEEEee---cCCc
Q 004404 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH-LLSSSM-DKTVRLWHLSSKTCLKIFS---HSDY 609 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~-LaSgs~-DgtVrLWDl~t~~~~~~~~---h~~~ 609 (755)
+-+..+..|.+.|..++.+-++. +.+.+. |+.++++|+..-..+..+. ..+.
T Consensus 44 -----------------------EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 44 -----------------------EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred -----------------------eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 11234556777888888887765 445566 8999999998765554433 3333
Q ss_pred eEEEEEeeCCC--cEEEEEECCCcEEEEECCCCc--EE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC-Cee
Q 004404 610 VTCIQFNPVDD--RYFISGSLDAKVRIWSIPERQ--VV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE-NKL 683 (755)
Q Consensus 610 VtsVafsP~dg--~~LaSgS~DgtVrIWDl~t~~--~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~-~~~ 683 (755)
+..+ .+|.+. .+-++.-.++.|.|+|-...- .. ...-|-.+|..+.+.|-+..+++....|-|.-|.... .+.
T Consensus 101 a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 101 AEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred eEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 3322 223111 223334567899999976533 22 2334567999999999999999999999999999874 111
Q ss_pred eec-cccccccc----cccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEee
Q 004404 684 QQK-SPINLQNK----KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFK 738 (755)
Q Consensus 684 ~~~-~~i~~~~~----~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~ 738 (755)
... ..+.+... .........+++.|+|++. .+.+-+.|.+||+++ ++++++.+.
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEeccchhhhhhh
Confidence 111 11111110 1112345678999999998 788889999999998 566665543
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0023 Score=74.15 Aligned_cols=268 Identities=13% Similarity=0.082 Sum_probs=138.5
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeee-ccccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQED 500 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~-~~~~~ 500 (755)
.+++.|-+-|.+.+|.....+..... ..|..+|..+.||++|..|+|+..=|.|.+|............ -.++-
T Consensus 72 ~vLa~gwe~g~~~v~~~~~~e~htv~-----~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel 146 (1416)
T KOG3617|consen 72 FVLAQGWEMGVSDVQKTNTTETHTVV-----ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHEL 146 (1416)
T ss_pred HHHhhccccceeEEEecCCceeeeec-----cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHh
Confidence 44788899999999998877654333 4699999999999999999999999999999986443332221 11111
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-c
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~ 579 (755)
+..-...+...++++.-.+ .....++..|...+. ..+....+....-..|.+ .|+ .
T Consensus 147 ~~~ltl~cfRL~~~~Ee~~---------------~laKaaVtgDe~alD-~~fnwk~~~a~rs~~ksg-------v~~g~ 203 (1416)
T KOG3617|consen 147 NDQLTLWCFRLSYDREEKF---------------KLAKAAVTGDESALD-EPFNWKESLAERSDEKSG-------VPKGT 203 (1416)
T ss_pred hceeeEEEEecCCChHHhh---------------hhhhhhccCchhhhc-ccccCccchhhccccccC-------CCCCc
Confidence 1112223334444311000 000001111111000 011000000000001111 233 4
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECC-CCc-----------------
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-ERQ----------------- 641 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~-t~~----------------- 641 (755)
.|+.++.+|+|+--|- .|++.......+. ..+-|.+ ....+++.-.+-++.++-+. +|.
T Consensus 204 ~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-vQmLf~~-~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Ggrq 280 (1416)
T KOG3617|consen 204 EFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-VQMLFMG-YCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQ 280 (1416)
T ss_pred EEEEEcCCceEEEEcC-CCcEEEEEEccch-HHHHHhc-ccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCcc
Confidence 5788899999988773 3555544432222 1122333 22222222222222222110 000
Q ss_pred ----------EE-----EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccccc-ccccccCCCCCeEE
Q 004404 642 ----------VV-----DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL-QNKKKRSHQRKITG 705 (755)
Q Consensus 642 ----------~v-----~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~-~~~~~~~h~~~Vts 705 (755)
++ --......++++|++..+..|+.|...|.+.+|--.....+....+.. .........+.|+.
T Consensus 281 GgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~ 360 (1416)
T KOG3617|consen 281 GGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISL 360 (1416)
T ss_pred CccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEE
Confidence 00 011233689999999999999999999999999654443332211110 01122345678999
Q ss_pred EEEccCCCeEEEEEEC
Q 004404 706 FQFAPGSSSEVLVTSA 721 (755)
Q Consensus 706 l~fsPdg~~~L~sgs~ 721 (755)
+.|.|-.+ .+++.+.
T Consensus 361 i~Wg~~k~-~~avn~~ 375 (1416)
T KOG3617|consen 361 IRWGPIKS-TAAVNTE 375 (1416)
T ss_pred EEeccccc-hhhhhhh
Confidence 99998654 3444443
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.45 E-value=0.0079 Score=69.67 Aligned_cols=143 Identities=9% Similarity=-0.003 Sum_probs=95.0
Q ss_pred CCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEE---------------------------------------
Q 004404 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS--------------------------------------- 627 (755)
Q Consensus 587 DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS--------------------------------------- 627 (755)
.+.+.+.|..+.+...++.-......++++| +++++++.+
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred eEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 4566777777766666655444556667777 666666554
Q ss_pred -CCCcEEEEECCC-----CcEEEeccCCCCEEEEEEccCCCEEEEEEC-CCcEEEEECCCCeeeecccccccc---cccc
Q 004404 628 -LDAKVRIWSIPE-----RQVVDWNDLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQN---KKKR 697 (755)
Q Consensus 628 -~DgtVrIWDl~t-----~~~v~~~~~~~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~~~~~~~~~i~~~~---~~~~ 697 (755)
.+++|.+.|..+ ..++..+........+.++|||+++++++. +.+|.++|+.+.+....-.+.... ...
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev- 371 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP- 371 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee-
Confidence 235688888887 466677777888899999999999888654 889999999886532110000000 000
Q ss_pred CCCCCeEEEEEccCCCeEEEEEECCCcEEEEECCc
Q 004404 698 SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (755)
Q Consensus 698 ~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~~ 732 (755)
.-...-...+|.++|. .+.+-.-|+.|-.||..+
T Consensus 372 evGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 0122334668898886 677778999999999443
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.43 E-value=0.0017 Score=76.08 Aligned_cols=150 Identities=13% Similarity=0.174 Sum_probs=112.9
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEEC---------CCcEEEEEC
Q 004404 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL---------DAKVRIWSI 637 (755)
Q Consensus 568 ~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~---------DgtVrIWDl 637 (755)
..|+-|+.+ +..+.+|...|+|.|-|.++.+.++++. |.+.|..+.. .|++|++|+. |..|+|||+
T Consensus 178 ~~v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 178 SGVTIMRYN-NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred CceEEEEec-CcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhh
Confidence 346655543 4678889999999999999999999997 9999998776 5788888875 556899999
Q ss_pred CCCcEEEeccCCCCEEEEEEccC-CCEEEEEECCCcEEEEECCCCeee--eccccccccccccCCCCCeEEEEEccCCCe
Q 004404 638 PERQVVDWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQ--QKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (755)
Q Consensus 638 ~t~~~v~~~~~~~~VtsvafSPd-G~~LasGs~DG~I~lwDl~~~~~~--~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~ 714 (755)
+..+.+.-+..+....-+.|.|. -..+++.+..|.+.+-|..+-... .... .......+.++.++++++
T Consensus 254 Rmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~-------v~p~~s~i~~fDiSsn~~- 325 (1118)
T KOG1275|consen 254 RMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM-------VNPNGSGISAFDISSNGD- 325 (1118)
T ss_pred hhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeE-------EccCCCcceeEEecCCCc-
Confidence 98776654555555566778885 357888888999999984332111 1111 112344599999999998
Q ss_pred EEEEEECCCcEEEEE
Q 004404 715 EVLVTSADSRIRVVD 729 (755)
Q Consensus 715 ~L~sgs~Dg~IrVWD 729 (755)
.|+.|-.+|.|.+|-
T Consensus 326 alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 326 ALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEEecccCcEeeec
Confidence 899999999999996
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0021 Score=69.33 Aligned_cols=84 Identities=12% Similarity=0.179 Sum_probs=73.7
Q ss_pred CceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEE
Q 004404 558 KPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (755)
Q Consensus 558 k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIW 635 (755)
+.+.-+.+|...|.+|+|+|. +.+..++.+.+|+|.|+.+..++..+.....+++++|.-++.++|+.|-..|.|.||
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEE
Confidence 444567788899999999996 679999999999999999999998888669999999998667889999999999999
Q ss_pred ECCCCc
Q 004404 636 SIPERQ 641 (755)
Q Consensus 636 Dl~t~~ 641 (755)
|++..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998654
No 324
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.30 E-value=0.011 Score=66.94 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=42.5
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCC
Q 004404 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM 651 (755)
Q Consensus 572 ~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~ 651 (755)
..+|.+.+.+++-....+|.|+.--.......+.....+..|-. |.+|+..+.+ .|.+||+.+++.+.......
T Consensus 73 ~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~- 146 (443)
T PF04053_consen 73 SFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVSA- 146 (443)
T ss_dssp EEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-
T ss_pred EEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecCC-
Confidence 45555555666666666666653222222122222222333322 4444444433 56677766666665555443
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEEC
Q 004404 652 VTAACYTPDGQGALVGSYKGSCHLYNT 678 (755)
Q Consensus 652 VtsvafSPdG~~LasGs~DG~I~lwDl 678 (755)
|..|.|+++|.+++..+.+ .++|++.
T Consensus 147 vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 6666677666666666533 4555543
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.29 E-value=0.11 Score=58.25 Aligned_cols=237 Identities=16% Similarity=0.153 Sum_probs=122.4
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceee-eeecccccCccccEEEeecCCCCceeccccCCCceeeecccccc
Q 004404 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG-ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (755)
Q Consensus 458 ~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~-~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~ 536 (755)
.|+.|.|+++..-|+.|-..|.|.||.+...+.-. ............. +..... ....+.+..+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~l~di~~r~~~- 70 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRR-FSLNNS----------PGKLTDISDRAPP- 70 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S---GGGS----------S-SEEE-GGG--T-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccc-ccccCC----------CcceEEehhhCCc-
Confidence 58999999998899999999999999886543221 0000000000000 000000 0000000000000
Q ss_pred cccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee---------cC
Q 004404 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS---------HS 607 (755)
Q Consensus 537 ~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~---------h~ 607 (755)
.+.. .-.|...+....++|++++.+.=++++.|..+|.+.|.|++....+..-. ..
T Consensus 71 -----~~~~----------gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~ 135 (395)
T PF08596_consen 71 -----SLKE----------GFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS 135 (395)
T ss_dssp -----T-SE----------EEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS--
T ss_pred -----cccc----------ccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccc
Confidence 0000 01345556677899999999855999999999999999998887776642 23
Q ss_pred CceEEEEEee----CCC---cEEEEEECCCcEEEEECC--C-Cc----EEEec-cCCCCEEEEE-EccC-----------
Q 004404 608 DYVTCIQFNP----VDD---RYFISGSLDAKVRIWSIP--E-RQ----VVDWN-DLHEMVTAAC-YTPD----------- 660 (755)
Q Consensus 608 ~~VtsVafsP----~dg---~~LaSgS~DgtVrIWDl~--t-~~----~v~~~-~~~~~Vtsva-fSPd----------- 660 (755)
..|+++.|.. .|+ -.+++|...|.+.+|.+. . +. ..... .+...|..+. |..+
T Consensus 136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~ 215 (395)
T PF08596_consen 136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISA 215 (395)
T ss_dssp --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHH
T ss_pred cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhH
Confidence 4789999974 122 478899999999999874 1 11 11222 4445555554 3211
Q ss_pred ------C---CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEcc----CCCeEEEEEECCCcEEE
Q 004404 661 ------G---QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP----GSSSEVLVTSADSRIRV 727 (755)
Q Consensus 661 ------G---~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsP----dg~~~L~sgs~Dg~IrV 727 (755)
| +.+++...+..++++...+.+..++. + ........+.+.+ .+...|++-..+|.|++
T Consensus 216 ~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~--------~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 216 MQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKS--------F-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp HHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE----------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred hhccccCCCcCcEEEEEcccceEEEeCCCCccccee--------e-ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 1 23455555889999999887766532 1 1112223334431 22336777799999999
Q ss_pred EEC
Q 004404 728 VDG 730 (755)
Q Consensus 728 WD~ 730 (755)
|..
T Consensus 287 ~SL 289 (395)
T PF08596_consen 287 YSL 289 (395)
T ss_dssp EET
T ss_pred EEC
Confidence 983
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.28 E-value=0.00018 Score=81.23 Aligned_cols=242 Identities=16% Similarity=0.210 Sum_probs=141.9
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC-CCCEEEEEE----CCCcEEEEeCcCCceeeeee
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAG----EDCVIHVWQVVESERKGELL 495 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp-dg~~LaTgs----~DGtVrVWdl~t~~~~~~l~ 495 (755)
..++..|..+|+|-+-....+..... ....+|....++++|++ |...||.|- .|..+.|||+.+.-..
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~---E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv---- 142 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSA---EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV---- 142 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccc---eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCC----
Confidence 35678899999999988876665411 22468889999999998 566777762 3567999998654110
Q ss_pred cccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEe
Q 004404 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (755)
Q Consensus 496 ~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~ 575 (755)
|..... +.. +.......++|
T Consensus 143 -----------------Pke~~~------------------------------------fs~-------~~l~gqns~cw 162 (783)
T KOG1008|consen 143 -----------------PKESPL------------------------------------FSS-------STLDGQNSVCW 162 (783)
T ss_pred -----------------Cccccc------------------------------------ccc-------ccccCcccccc
Confidence 000000 000 01122347788
Q ss_pred cCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEEC-CC-CcEEEecc-----
Q 004404 576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI-PE-RQVVDWND----- 647 (755)
Q Consensus 576 spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl-~t-~~~v~~~~----- 647 (755)
..+ ..+++|...+.|.++|++........-.+..|..+...|..++|+++-. ||.|-+||. +. ..++....
T Consensus 163 lrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~ 241 (783)
T KOG1008|consen 163 LRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENK 241 (783)
T ss_pred ccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCC
Confidence 766 5677787888999999984322222224557778888887778887766 999999993 22 22222221
Q ss_pred CCCCEEEEEEccCCC-EEEE-EECCCcEEEEECCCCeeeecc---cccccccc--cc--CCCCCeEEEEEccCCC-eEEE
Q 004404 648 LHEMVTAACYTPDGQ-GALV-GSYKGSCHLYNTSENKLQQKS---PINLQNKK--KR--SHQRKITGFQFAPGSS-SEVL 717 (755)
Q Consensus 648 ~~~~VtsvafSPdG~-~Las-Gs~DG~I~lwDl~~~~~~~~~---~i~~~~~~--~~--~h~~~Vtsl~fsPdg~-~~L~ 717 (755)
....+..++|.|... .+++ .-..++|++||+..-.-.... .+.....+ .+ +.-..|..+.|++..+ ...+
T Consensus 242 ~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~i 321 (783)
T KOG1008|consen 242 KPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQI 321 (783)
T ss_pred cccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeE
Confidence 223599999999543 3333 445678999998632111000 00000000 11 2235677778887652 2344
Q ss_pred EEECCCcEEEEEC
Q 004404 718 VTSADSRIRVVDG 730 (755)
Q Consensus 718 sgs~Dg~IrVWD~ 730 (755)
++-..-++.-++.
T Consensus 322 l~~~nl~~~Df~V 334 (783)
T KOG1008|consen 322 LGVINLQPKDFSV 334 (783)
T ss_pred EeeccCChhhccc
Confidence 4544445555543
No 327
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.27 E-value=0.0058 Score=62.80 Aligned_cols=146 Identities=16% Similarity=0.089 Sum_probs=96.5
Q ss_pred CCcEEEEECCCCcEEEEeecCCceEEEE--EeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEE
Q 004404 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQ--FNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGA 664 (755)
Q Consensus 587 DgtVrLWDl~t~~~~~~~~h~~~VtsVa--fsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~L 664 (755)
+++|..||..+++.+........+.... ..+ ++.++++++.++.|..||..+++.+-.......+...- ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 6899999999999998886422122222 222 46777778999999999999999875544443322211 2245677
Q ss_pred EEEECCCcEEEEECCCCeeeecc-ccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCC
Q 004404 665 LVGSYKGSCHLYNTSENKLQQKS-PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGEN 741 (755)
Q Consensus 665 asGs~DG~I~lwDl~~~~~~~~~-~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~ 741 (755)
++++.++.|+.+|+.+++..... .... .... ..........+. .++++..++.|..+| .++++-++....
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~-----~~~~-~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSS-----PPAG-VRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SS-----CTCS-TB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred ccccceeeeEecccCCcceeeeeccccc-----cccc-cccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 88878899999999999988763 2110 0111 112222222244 788888899999999 678888877744
No 328
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.21 E-value=0.045 Score=59.55 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=92.9
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-EEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC--C
Q 004404 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT-CLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE--R 640 (755)
Q Consensus 566 H~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~-~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t--~ 640 (755)
..++|++|+-- +++|+.+. .+.|++|++...+ ....-. ....++++... +++|+.|..-..|.++.... .
T Consensus 87 ~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 87 VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence 35678888866 45544444 4899999998877 554443 44467777664 56999999988888875433 3
Q ss_pred cEE--EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccc-ccccccccCCCCCeEEE---EEcc--CC
Q 004404 641 QVV--DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI-NLQNKKKRSHQRKITGF---QFAP--GS 712 (755)
Q Consensus 641 ~~v--~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i-~~~~~~~~~h~~~Vtsl---~fsP--dg 712 (755)
++. ..-.....++++.|-++++.++++..+|.+.++..........-.. .+...........|+++ .+.| .+
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~ 241 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGS 241 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSS
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCC
Confidence 233 2223355789999987778999999999999998863211100000 00000011234567777 4455 22
Q ss_pred C-----eEEEEEECCCcEEEE
Q 004404 713 S-----SEVLVTSADSRIRVV 728 (755)
Q Consensus 713 ~-----~~L~sgs~Dg~IrVW 728 (755)
. ..++.++.+|.|-+.
T Consensus 242 ~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 242 SESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S-TTEEEEEEEEETTS-EEEE
T ss_pred CcccccceEEEEecCCEEEEE
Confidence 2 248888899998743
No 329
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.18 E-value=0.14 Score=56.46 Aligned_cols=275 Identities=14% Similarity=0.126 Sum_probs=145.1
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccc---ccCc----
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ---EDGH---- 502 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~---~~~~---- 502 (755)
.+.+.+|++.+++...+.. ....+....|||+|++||-.. ++.|.+++..+++..+-..... ..|.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~------~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwv 94 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP------PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWV 94 (353)
T ss_dssp EEEEEEEETTTTEEEESS-------EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HH
T ss_pred ceeEEEEecCCCceEECcC------CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCcccee
Confidence 4568889998776655443 257788999999999999885 5789999987763322111110 0011
Q ss_pred -----cccEEEeecCCCCceeccccCCCc-eeeec-----cccc----c--cccccccCc-ccccceeeecCCCceEEec
Q 004404 503 -----LNMLLLANGSPEPTSLSPKHLDNH-LEKKR-----RGRS----I--NRKSLSLDH-MVVPETVFALSDKPICSFQ 564 (755)
Q Consensus 503 -----~~~v~~v~~s~dg~~l~~~s~d~~-i~~~~-----~~~~----~--~~~s~s~d~-~~~~~~v~~~s~k~i~~l~ 564 (755)
...-..+-|+|++..++....+.. +.... .... . .......+. ..+...++.+....+..+.
T Consensus 95 yeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~ 174 (353)
T PF00930_consen 95 YEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELD 174 (353)
T ss_dssp HHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE-
T ss_pred ccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEee
Confidence 112245779999998887654431 11100 0000 0 000000011 1111133444333322221
Q ss_pred ------cCCCCEEEEEecCCcE-EEEEeCCC-----cEEEEECCCCcEEEEee--cCCce---EEEEEe-eCCCcEEEEE
Q 004404 565 ------GHLDDVLDLSWSKSQH-LLSSSMDK-----TVRLWHLSSKTCLKIFS--HSDYV---TCIQFN-PVDDRYFISG 626 (755)
Q Consensus 565 ------gH~~~V~~L~~spd~~-LaSgs~Dg-----tVrLWDl~t~~~~~~~~--h~~~V---tsVafs-P~dg~~LaSg 626 (755)
.-..-+..+.|.+++. |+..-.++ .+.+.|..++.+...+. ....| ..+.|. +.+..+|...
T Consensus 175 ~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s 254 (353)
T PF00930_consen 175 PPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWIS 254 (353)
T ss_dssp --HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEE
T ss_pred eccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEE
Confidence 2334578899998854 55444332 36677887765544443 33333 255554 5355566666
Q ss_pred ECCCc--EEEEECCCCcEEEeccCCCCEEE-EEEccCCCEEEE-EECC----CcEEEEECC-CCeeeecccccccccccc
Q 004404 627 SLDAK--VRIWSIPERQVVDWNDLHEMVTA-ACYTPDGQGALV-GSYK----GSCHLYNTS-ENKLQQKSPINLQNKKKR 697 (755)
Q Consensus 627 S~Dgt--VrIWDl~t~~~v~~~~~~~~Vts-vafSPdG~~Las-Gs~D----G~I~lwDl~-~~~~~~~~~i~~~~~~~~ 697 (755)
..||. |.+++...+....+....-.|+. +.|+++++.|+. +..+ ..|+.-++. .+.+..... ...
T Consensus 255 ~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~------~~~ 328 (353)
T PF00930_consen 255 ERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC------EDG 328 (353)
T ss_dssp ETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST------TSS
T ss_pred EcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC------CCC
Confidence 67776 44556666766666666667754 778888776654 5442 246666666 444443211 111
Q ss_pred CCCCCeEEEEEccCCCeEEEEEEC
Q 004404 698 SHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 698 ~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
.| ..+.|+|+++.++.+.+.
T Consensus 329 ~~----~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 329 DH----YSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp TT----EEEEE-TTSSEEEEEEES
T ss_pred Cc----eEEEECCCCCEEEEEEcC
Confidence 22 789999999965555554
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.12 E-value=0.079 Score=61.63 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=74.1
Q ss_pred CCCcEEEEECCC-----CcEEEEeecCCceEEEEEeeCCCcEEEEEE-CCCcEEEEECCCCc------------EEEecc
Q 004404 586 MDKTVRLWHLSS-----KTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQ------------VVDWND 647 (755)
Q Consensus 586 ~DgtVrLWDl~t-----~~~~~~~~h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWDl~t~~------------~v~~~~ 647 (755)
.+++|.+.|..+ .+.+..+.-......|.++| |++++++++ .+.+|.|.|+.+.+ ++....
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 367899999998 46677777788889999999 888776654 58999999998754 233334
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 004404 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (755)
Q Consensus 648 ~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~ 680 (755)
........+|.++|....+-..|..|..|++..
T Consensus 373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 444566788999998777788899999999986
No 331
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.05 E-value=0.032 Score=50.58 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=72.9
Q ss_pred EEEEEecC---C--cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE
Q 004404 570 VLDLSWSK---S--QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (755)
Q Consensus 570 V~~L~~sp---d--~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~ 644 (755)
|++|++.. + +.|++|+.|..||+|+ ..+.+..+...+.|++++-.. ...|+.+..+|+|-+|+-....- +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~RlW-R 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQRLW-R 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcceee-e
Confidence 56666654 3 6799999999999997 457788888889999998876 57899999999999998643322 2
Q ss_pred eccCCCCEEEEEEcc-CC---CEEEEEECCCcEEE
Q 004404 645 WNDLHEMVTAACYTP-DG---QGALVGSYKGSCHL 675 (755)
Q Consensus 645 ~~~~~~~VtsvafSP-dG---~~LasGs~DG~I~l 675 (755)
. ..+..++++++.. ++ +-|++|-.+|.|-+
T Consensus 77 i-KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 I-KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred e-ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 2333466665543 33 57888988888743
No 332
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.04 E-value=0.0017 Score=44.56 Aligned_cols=35 Identities=43% Similarity=0.868 Sum_probs=32.0
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEe
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWd 484 (755)
..+.+|...|.++.|.+++.++++++.|+.|++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45668999999999999999999999999999996
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.03 E-value=0.22 Score=57.60 Aligned_cols=153 Identities=9% Similarity=0.051 Sum_probs=90.9
Q ss_pred cEEEEEeCCC------------------cEEEEECCCCcEEEEeecC---C----ceEEEEEee---CCCc---EEEEEE
Q 004404 579 QHLLSSSMDK------------------TVRLWHLSSKTCLKIFSHS---D----YVTCIQFNP---VDDR---YFISGS 627 (755)
Q Consensus 579 ~~LaSgs~Dg------------------tVrLWDl~t~~~~~~~~h~---~----~VtsVafsP---~dg~---~LaSgS 627 (755)
+.++.++.++ .|.-+|..+++.+..+... . ......+.+ .++. .++.++
T Consensus 229 g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~ 308 (488)
T cd00216 229 NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP 308 (488)
T ss_pred CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC
Confidence 6777777665 7999999999998887521 1 101111111 1333 678888
Q ss_pred CCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEE------------------ECCCcEEEEECCCCeeeecccc
Q 004404 628 LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVG------------------SYKGSCHLYNTSENKLQQKSPI 689 (755)
Q Consensus 628 ~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasG------------------s~DG~I~lwDl~~~~~~~~~~i 689 (755)
.+|.+...|..+++++-..... ...++.+| ..++++ ..+|.+.-.|+.+++.+.....
T Consensus 309 ~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~ 384 (488)
T cd00216 309 KNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKRE 384 (488)
T ss_pred CCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeC
Confidence 9999999999999987433221 11234444 233332 2367899999999988776442
Q ss_pred ccccccccCCCCCe--EEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeec
Q 004404 690 NLQNKKKRSHQRKI--TGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKG 739 (755)
Q Consensus 690 ~~~~~~~~~h~~~V--tsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~G 739 (755)
....... .-.... ..+.. .+. .|++++.|+.|+.+| +++++-+++-
T Consensus 385 ~~~~~~~-~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 385 GTIRDSW-NIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred Ccccccc-ccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCCceeeEEEC
Confidence 1000000 000111 11222 233 788889999999999 5777766653
No 334
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.03 E-value=0.55 Score=49.55 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=85.8
Q ss_pred cEEEEEeCCCcEEEEECCCC-----cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC----
Q 004404 579 QHLLSSSMDKTVRLWHLSSK-----TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH---- 649 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~-----~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~---- 649 (755)
...+.....++|.+|..... +..+.+.....+..++|.+ +.|+.|..+ ...+.|+.++....+....
T Consensus 105 ~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~ 180 (275)
T PF00780_consen 105 SRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG---NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSS 180 (275)
T ss_pred ceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC---CEEEEEeCC-ceEEEecCCCCceEEeCccCCcc
Confidence 34444555568888877652 4666677889999999974 667777644 4788999987766554322
Q ss_pred ---------CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 650 ---------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 650 ---------~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
.++..+.. +++.+|++- +..-.+.|... +......+ .+ ...+..+++.. + +|++..
T Consensus 181 ~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G-~~~r~~~i-----~W---~~~p~~~~~~~--p-yli~~~ 245 (275)
T PF00780_consen 181 SFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNG-EPSRKSTI-----QW---SSAPQSVAYSS--P-YLIAFS 245 (275)
T ss_pred hhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCC-CcCcccEE-----Ec---CCchhEEEEEC--C-EEEEEC
Confidence 12333333 345566543 34444455543 32221111 11 23455666643 3 566555
Q ss_pred CCCcEEEEE--CCcceEEeecCCc
Q 004404 721 ADSRIRVVD--GIDLVHKFKGENY 742 (755)
Q Consensus 721 ~Dg~IrVWD--~~~ll~~~~GH~~ 742 (755)
. +.|.||+ .+++++.+.+..-
T Consensus 246 ~-~~iEV~~~~~~~lvQ~i~~~~~ 268 (275)
T PF00780_consen 246 S-NSIEVRSLETGELVQTIPLPNI 268 (275)
T ss_pred C-CEEEEEECcCCcEEEEEECCCE
Confidence 5 5599999 6889999886543
No 335
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.00047 Score=79.99 Aligned_cols=157 Identities=16% Similarity=0.165 Sum_probs=114.2
Q ss_pred CceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCC--cEE
Q 004404 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA--KVR 633 (755)
Q Consensus 558 k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~Dg--tVr 633 (755)
++..+|..|....+|++|+-. ++|+.|+..|.|+++++.+|....... |..+|+-|.-+. ++..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 556778889999999999987 899999999999999999998877776 999999999888 887776655433 467
Q ss_pred EEECCC-CcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 634 IWSIPE-RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 634 IWDl~t-~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
+|++.. +.....+ ..-.++.|+..-+.-+.|+......+||+.++....++-... .+....=+...|+|+.
T Consensus 1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~-----~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT-----VTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc-----hhhhhhccccccCCCc
Confidence 999865 2222222 234567888777777778877889999999998877632111 1122222567789987
Q ss_pred CeEEEEEECCCcEEEEE
Q 004404 713 SSEVLVTSADSRIRVVD 729 (755)
Q Consensus 713 ~~~L~sgs~Dg~IrVWD 729 (755)
. +++ .|| -+||
T Consensus 1243 ~-LIl---ndG--vLWD 1253 (1516)
T KOG1832|consen 1243 T-LIL---NDG--VLWD 1253 (1516)
T ss_pred c-eEe---eCc--eeee
Confidence 5 444 344 4677
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.99 E-value=0.16 Score=53.31 Aligned_cols=209 Identities=11% Similarity=0.070 Sum_probs=103.5
Q ss_pred eEeecccCCEEEEEEcCCCC-EEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 450 QEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~-~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
+.+.+-...|..|+|+|+.. +++.....+.|...+. +++.+..+... + ..-.-.+++..++.+++.......+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~---g-~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD---G-FGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S---S--SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC---C-CCCceeEEEECCCEEEEEEcCCCcEE
Confidence 34556666799999999755 5566666777777775 45665554311 1 22333444445555555443333222
Q ss_pred eecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCC---CcEEEEe
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS---KTCLKIF 604 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t---~~~~~~~ 604 (755)
...... +..... .-....-.+.....+...+-.|+|.+. +.|+.+-......||.+.. ...+...
T Consensus 90 ~~~~~~---------~~~~~~--~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 90 IFTIDD---------DTTSLD--RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EEEE-------------TT----EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEEEec---------cccccc--hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 111100 000000 000000000011235566899999996 7777777777777777653 2222221
Q ss_pred e---------cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC----------CCEEEEEEccCCCEEE
Q 004404 605 S---------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH----------EMVTAACYTPDGQGAL 665 (755)
Q Consensus 605 ~---------h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~----------~~VtsvafSPdG~~La 665 (755)
. ....+.+++++|..+++++-......|.++| .+++++...... ...-.|+|.++|++ +
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-Y 236 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-Y 236 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-E
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-E
Confidence 1 3456889999997778888888889999999 667776544333 26789999999954 4
Q ss_pred EEECCCcEEEE
Q 004404 666 VGSYKGSCHLY 676 (755)
Q Consensus 666 sGs~DG~I~lw 676 (755)
+.+.-+..++|
T Consensus 237 IvsEpNlfy~f 247 (248)
T PF06977_consen 237 IVSEPNLFYRF 247 (248)
T ss_dssp EEETTTEEEEE
T ss_pred EEcCCceEEEe
Confidence 44455555554
No 337
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0024 Score=68.79 Aligned_cols=93 Identities=16% Similarity=0.275 Sum_probs=76.4
Q ss_pred EEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCC-CEEEEE
Q 004404 590 VRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG-QGALVG 667 (755)
Q Consensus 590 VrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG-~~LasG 667 (755)
|++.+..+-+..+.+. +...|..++|+|.+..++..++.+.+|+|.|+++..++..+.....+++++|.-|. .+|++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 5555554444444443 78889999999954458999999999999999999999888888999999999865 688899
Q ss_pred ECCCcEEEEECCCCe
Q 004404 668 SYKGSCHLYNTSENK 682 (755)
Q Consensus 668 s~DG~I~lwDl~~~~ 682 (755)
..+|.|+|||++...
T Consensus 255 l~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPE 269 (463)
T ss_pred ccCceEEEEEccCCC
Confidence 999999999998643
No 338
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.83 E-value=0.067 Score=48.51 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=71.9
Q ss_pred eEEEEEeeCCC---cEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 610 VTCIQFNPVDD---RYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 610 VtsVafsP~dg---~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
|+++++...++ +.|++|+.|..||+|+-. .++........|++++-... ..++.+..+|+|-+|+-....-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi- 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI- 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee-
Confidence 67777765433 689999999999999743 56666667788999988876 568888899999999764322211
Q ss_pred cccccccccccCCCCCeEEEEEc---cCCCeEEEEEECCCcEE
Q 004404 687 SPINLQNKKKRSHQRKITGFQFA---PGSSSEVLVTSADSRIR 726 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fs---Pdg~~~L~sgs~Dg~Ir 726 (755)
.....++++++. -+|-..|++|-.+|.|-
T Consensus 78 -----------KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 -----------KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -----------ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 122336666654 34445789998888774
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.82 E-value=0.0046 Score=71.01 Aligned_cols=119 Identities=8% Similarity=0.197 Sum_probs=90.1
Q ss_pred cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc--CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCee
Q 004404 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND--LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~--~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~ 683 (755)
+...|.--++.. .+++++.|+.-|.|++|+...++...... .+..+..++.+++..++|+|+..|.|.+|-+.....
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 344444444555 78999999999999999988887665443 556788888999999999999999999999887443
Q ss_pred eeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.....+. .--+.|...|+++.|++++. .+.+|..-|+|.+-.
T Consensus 111 ~~~~~~t---~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 111 RDLDYVT---PCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTE 152 (726)
T ss_pred Ccceeec---cccccCCceEEEEEeccccc-EEeecCCCceEEEEE
Confidence 3222111 11234889999999999998 899999999887754
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0052 Score=69.75 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=75.0
Q ss_pred cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEE-EEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVT-AACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~Vt-svafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
-...|.-+.|+| .-.+||.+..+|.|.+..+.-.++..+-.+...++ +++|.|||+.||+|-.||+|++.|+.++..+
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 345678899999 88999999999999999888444434333556666 9999999999999999999999999999887
Q ss_pred eccccccccccccCCCCCeEEEEEcc
Q 004404 685 QKSPINLQNKKKRSHQRKITGFQFAP 710 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fsP 710 (755)
..... .....|+.+-|.+
T Consensus 98 ~~~~~--------s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLF--------SVETDISKGIWDR 115 (665)
T ss_pred ecccc--------ccccchheeeccc
Confidence 75322 3345566666653
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.6 Score=52.25 Aligned_cols=174 Identities=14% Similarity=0.171 Sum_probs=118.0
Q ss_pred EEEEEecCC-cEEEEEeC---CCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEE-CCCcEEEEECCCCcEEE
Q 004404 570 VLDLSWSKS-QHLLSSSM---DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQVVD 644 (755)
Q Consensus 570 V~~L~~spd-~~LaSgs~---DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWDl~t~~~v~ 644 (755)
...++++++ +.+..+.. +++|.+.|..+.+.+.+..-...-..+++.| ++..++... .++.|.+.|.....+..
T Consensus 118 P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 118 PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec
Confidence 456777777 35554444 6899999999988888865332228999999 888655554 78999999987766654
Q ss_pred -----eccCCCCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEE
Q 004404 645 -----WNDLHEMVTAACYTPDGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (755)
Q Consensus 645 -----~~~~~~~VtsvafSPdG~~LasGs~D---G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L 716 (755)
..........+.++|+|+++.+.... +.+...|..++........ .+.. ....+.+.|+|. .+
T Consensus 197 ~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~-------~~~~-~~~~v~~~p~g~-~~ 267 (381)
T COG3391 197 GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP-------VGSG-APRGVAVDPAGK-AA 267 (381)
T ss_pred cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc-------cccC-CCCceeECCCCC-EE
Confidence 23334566789999999987775544 5899999998877664110 0122 456788999998 45
Q ss_pred EEE-ECCCcEEEEEC--CcceEEeecCCc---cEEEEEEEEEE
Q 004404 717 LVT-SADSRIRVVDG--IDLVHKFKGENY---VQYMVCIVLFF 753 (755)
Q Consensus 717 ~sg-s~Dg~IrVWD~--~~ll~~~~GH~~---~V~sv~fs~F~ 753 (755)
.+. +..+.+.+.|. ..++..+..... .++.+++.+++
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 555 56689999994 344444443333 36677666654
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.70 E-value=0.13 Score=53.90 Aligned_cols=173 Identities=14% Similarity=0.236 Sum_probs=100.9
Q ss_pred EeccCCCCEEEEEecCC-c-EEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEEC
Q 004404 562 SFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637 (755)
Q Consensus 562 ~l~gH~~~V~~L~~spd-~-~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl 637 (755)
.+.+-...+..|+|.|+ + .+++....+.|..++. .|+.++.+. ..+..-.|++.- ++.++++--.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 45566677999999997 5 4556667788888886 478888776 345678889876 6666665545899999988
Q ss_pred CCC--c--E---E--E--ec-cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC---Ceeee-ccccccccccccCCCC
Q 004404 638 PER--Q--V---V--D--WN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE---NKLQQ-KSPINLQNKKKRSHQR 701 (755)
Q Consensus 638 ~t~--~--~---v--~--~~-~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~---~~~~~-~~~i~~~~~~~~~h~~ 701 (755)
... . . . . +. ..+..+-.++|.|.++.|+++-...-..||.+.. ..... .....+ ........
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 171 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL--DDDKLFVR 171 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH--H-HT--SS
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccc--ccccceec
Confidence 332 1 1 1 1 11 1334689999999988888887777777777754 11111 111011 11123445
Q ss_pred CeEEEEEccCCCeEEEEEECCCcEEEEE-CCcceEEee
Q 004404 702 KITGFQFAPGSSSEVLVTSADSRIRVVD-GIDLVHKFK 738 (755)
Q Consensus 702 ~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD-~~~ll~~~~ 738 (755)
.+.++.++|....+++.......|.++| .++++..+.
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~ 209 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLS 209 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEE
Confidence 6899999998776777777888899999 466555443
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.66 E-value=0.067 Score=62.64 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=73.7
Q ss_pred EEEEEEcCCCCEEEEEEC----CCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 459 IWSIKFSLDGRYLASAGE----DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 459 I~sI~fSpdg~~LaTgs~----DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
-+-+.|+|...+||.++- -|.|.|+- ++++..... ..+-.+..+.|.|...+|+.+..-+.+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V------t~P~hatSLCWHpe~~vLa~gwe~g~~------- 83 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV------TYPVHATSLCWHPEEFVLAQGWEMGVS------- 83 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc------ccceehhhhccChHHHHHhhcccccee-------
Confidence 344678998888888864 47788874 445432221 112223458899988888887665555
Q ss_pred cccccccccCcccccceeeecCCCce-EEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECC
Q 004404 535 SINRKSLSLDHMVVPETVFALSDKPI-CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS 596 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~k~i-~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~ 596 (755)
.+|....+.. .....|..+|..+.|+++ +.++++..-|.|.+|...
T Consensus 84 ----------------~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 84 ----------------DVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ----------------EEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3333333333 334579999999999999 779999999999999875
No 344
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.62 E-value=0.069 Score=65.02 Aligned_cols=150 Identities=12% Similarity=0.187 Sum_probs=104.2
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEEC----CC---
Q 004404 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI----PE--- 639 (755)
Q Consensus 568 ~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl----~t--- 639 (755)
+.|.++.|.-+ ..++.+..+|.|.+-|..+......=.-...|.+++|+| |+..++..+..+++.+-.- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhccc
Confidence 57899999877 678888899999999887765544434778999999999 9999999998888765432 00
Q ss_pred --------CcEE--Ee-------cc---------------------CCCCEEEEEEccCCCEEEEE-----ECCCcEEEE
Q 004404 640 --------RQVV--DW-------ND---------------------LHEMVTAACYTPDGQGALVG-----SYKGSCHLY 676 (755)
Q Consensus 640 --------~~~v--~~-------~~---------------------~~~~VtsvafSPdG~~LasG-----s~DG~I~lw 676 (755)
.+.+ .| .+ ....=++|+|.-||+++|+. .....|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0101 00 00 11123469999999999983 333789999
Q ss_pred ECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE---ECCCcEEEEE
Q 004404 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT---SADSRIRVVD 729 (755)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg---s~Dg~IrVWD 729 (755)
|-+ +.+..... ...+.=.+++|-|.|. ++++. +.|+.|.+|.
T Consensus 228 drE-g~Lns~se---------~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 228 DRE-GALNSTSE---------PVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred ccc-chhhcccC---------cccccccceeecCCCC-eEeeeeecCCCCcEEEEe
Confidence 988 55544321 2233345789999887 66665 5577899998
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.59 E-value=0.58 Score=54.14 Aligned_cols=104 Identities=9% Similarity=0.037 Sum_probs=68.8
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEE------------------ECCCcEEEEECCCCc
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG------------------SLDAKVRIWSIPERQ 641 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSg------------------S~DgtVrIWDl~t~~ 641 (755)
.++.++.+|.+...|..+|+.+...... ...++..| ..++.+ ..+|.|.-.|+.+++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 5788889999999999999988776422 11123333 222222 236788888999988
Q ss_pred EEEeccCC---------CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccc
Q 004404 642 VVDWNDLH---------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 642 ~v~~~~~~---------~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
.+-..... .....-.....+..|++++.||.|+.+|..+|+++....
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 76433322 111111111246789999999999999999999987654
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.57 E-value=0.01 Score=68.31 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=91.8
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE-----EEe--ccC
Q 004404 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-----VDW--NDL 648 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~-----v~~--~~~ 648 (755)
..+++.|+.-|.|++|.-..++....-. ..+.+..+..++ +..++|.|+..|.|.++-+....+ +.- ..|
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 3889999999999999987766544332 455667777888 888999999999999998866432 111 224
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEcc
Q 004404 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (755)
Q Consensus 649 ~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsP 710 (755)
...|++++|++++..+++|...|.|.+-.+... ... ......+..-...|..+.+..
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~----~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAF----LSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEechh-hhh----ccccceeeccCcceEEeeccc
Confidence 678999999999999999999999999888772 111 111122334556777776654
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.57 E-value=0.61 Score=52.71 Aligned_cols=86 Identities=8% Similarity=0.001 Sum_probs=53.6
Q ss_pred EeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccc
Q 004404 615 FNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694 (755)
Q Consensus 615 fsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~ 694 (755)
+.. +....+....++.+.+.+-...+. ....+++..|++||+|++||.-..+|.+.+....-.+....+.+
T Consensus 186 l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~----- 256 (410)
T PF04841_consen 186 LSS-DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT----- 256 (410)
T ss_pred eec-CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec-----
Confidence 444 455555556666666444332211 33356899999999999999999999999987765555443332
Q ss_pred cccCCCCCeEEEEEccCC
Q 004404 695 KKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 695 ~~~~h~~~Vtsl~fsPdg 712 (755)
.-......+.|+-++
T Consensus 257 ---~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 257 ---DSKSPPKQMAWCGND 271 (410)
T ss_pred ---CcCCCCcEEEEECCC
Confidence 122344566666543
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.01 Score=67.56 Aligned_cols=90 Identities=11% Similarity=0.233 Sum_probs=77.1
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceE-EEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE
Q 004404 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVT-CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (755)
Q Consensus 568 ~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~Vt-sVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~ 644 (755)
..|.-+.|+|. ..+|.+..+|.|-+..+. .+.+.++. +...++ +++|.| ||++|+.|-.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCcee
Confidence 34778999998 889999999999999988 77788887 777887 999999 99999999999999999999988765
Q ss_pred e--ccCCCCEEEEEEcc
Q 004404 645 W--NDLHEMVTAACYTP 659 (755)
Q Consensus 645 ~--~~~~~~VtsvafSP 659 (755)
- ......|..+-|.|
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 4 44556788888864
No 349
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.64 Score=50.34 Aligned_cols=226 Identities=12% Similarity=0.097 Sum_probs=129.2
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecc
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~ 497 (755)
++...++|+--..++|..|+..+++... + .+.+.+.++..-..+..|+++. .-+.+++++++.....+...
T Consensus 34 ~~~~~L~w~DI~~~~i~r~~~~~g~~~~------~-~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 34 PDRGALLWVDILGGRIHRLDPETGKKRV------F-PSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CCCCEEEEEeCCCCeEEEecCCcCceEE------E-ECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccc
Confidence 3444567888889999999887554322 1 1334445555544555666653 34777777655543333322
Q ss_pred cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec--CCCceEEeccCCCCEEEEEe
Q 004404 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSW 575 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~--s~k~i~~l~gH~~~V~~L~~ 575 (755)
......+........++|.+.++.... .. ..... .... ..++.+ .+..+..+..|-..-+.|+|
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~--~~---~~~~~-------~~~~--G~lyr~~p~g~~~~l~~~~~~~~NGla~ 170 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGY--FD---LGKSE-------ERPT--GSLYRVDPDGGVVRLLDDDLTIPNGLAF 170 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCc--cc---cCccc-------cCCc--ceEEEEcCCCCEEEeecCcEEecCceEE
Confidence 223333444556667777766655331 00 00000 0000 022222 34555556666666788999
Q ss_pred cCCc-EEEEE-eCCCcEEEEECCC--C----cE-EEEee-cCCceEEEEEeeCCCcEEEEEECCC-cEEEEECCCCcEEE
Q 004404 576 SKSQ-HLLSS-SMDKTVRLWHLSS--K----TC-LKIFS-HSDYVTCIQFNPVDDRYFISGSLDA-KVRIWSIPERQVVD 644 (755)
Q Consensus 576 spd~-~LaSg-s~DgtVrLWDl~t--~----~~-~~~~~-h~~~VtsVafsP~dg~~LaSgS~Dg-tVrIWDl~t~~~v~ 644 (755)
+|++ .|+.+ +..+.|.-|++.. + +. ...+. ..+..-.++... ++.+.+++-..| .|.+|+.. ++++.
T Consensus 171 SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l~~ 248 (307)
T COG3386 171 SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKLLG 248 (307)
T ss_pred CCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcEEE
Confidence 9994 44444 4457888887752 1 11 11111 456677778877 788776555554 89999988 88776
Q ss_pred eccCC-CCEEEEEEc-cCCCEEEEEE
Q 004404 645 WNDLH-EMVTAACYT-PDGQGALVGS 668 (755)
Q Consensus 645 ~~~~~-~~VtsvafS-PdG~~LasGs 668 (755)
....+ ..+++++|- |+.+.|++.+
T Consensus 249 ~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 249 EIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCCCCCccceEeCCCcCEEEEEe
Confidence 66666 788888885 3455555544
No 350
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.44 E-value=0.92 Score=47.69 Aligned_cols=190 Identities=10% Similarity=0.064 Sum_probs=116.4
Q ss_pred CEEEEEEcCCCCEEEEEECCC--cEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccccc
Q 004404 458 SIWSIKFSLDGRYLASAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (755)
Q Consensus 458 ~I~sI~fSpdg~~LaTgs~DG--tVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~ 535 (755)
-...+.|..+|.++-+.|.-| .|+.+|+.+++......... .++.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----------------~~Fg---------------- 92 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----------------RYFG---------------- 92 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----------------T--E----------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----------------cccc----------------
Confidence 456788878888888888776 78999998887654431100 0000
Q ss_pred ccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEE
Q 004404 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQF 615 (755)
Q Consensus 536 ~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVaf 615 (755)
+-+ .-+.+.|..|.|- .+...+||..+-+.+.++.....=+.++.
T Consensus 93 ----------------------EGi---t~~~d~l~qLTWk----------~~~~f~yd~~tl~~~~~~~y~~EGWGLt~ 137 (264)
T PF05096_consen 93 ----------------------EGI---TILGDKLYQLTWK----------EGTGFVYDPNTLKKIGTFPYPGEGWGLTS 137 (264)
T ss_dssp ----------------------EEE---EEETTEEEEEESS----------SSEEEEEETTTTEEEEEEE-SSS--EEEE
T ss_pred ----------------------eeE---EEECCEEEEEEec----------CCeEEEEccccceEEEEEecCCcceEEEc
Confidence 000 1123346666664 68899999999999999987777788884
Q ss_pred eeCCCcEEEEEECCCcEEEEECCCCcEEEeccC---C---CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccc
Q 004404 616 NPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL---H---EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (755)
Q Consensus 616 sP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~---~---~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i 689 (755)
+++.|+......+|+++|..+-+....... . ..++-+-|- +|...|=.=....|...|..+|+....+.+
T Consensus 138 ---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 138 ---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp ---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred ---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence 677777777788999999888765533222 1 246667775 564444455567788889999988876543
Q ss_pred cccccc------ccCCCCCeEEEEEccCCCeEEEEE
Q 004404 690 NLQNKK------KRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 690 ~~~~~~------~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
...... ........++|+|.|..+.+++||
T Consensus 214 s~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 214 SGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred hHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 221111 111246789999999988555555
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.39 E-value=0.064 Score=64.44 Aligned_cols=133 Identities=19% Similarity=0.177 Sum_probs=90.9
Q ss_pred eCCCcEEEEECCCCcEEEEee-cC-CceEEEEEe----eCCCcEEEEEECCCcEEEEECCCC--cEEE----eccCCCCE
Q 004404 585 SMDKTVRLWHLSSKTCLKIFS-HS-DYVTCIQFN----PVDDRYFISGSLDAKVRIWSIPER--QVVD----WNDLHEMV 652 (755)
Q Consensus 585 s~DgtVrLWDl~t~~~~~~~~-h~-~~VtsVafs----P~dg~~LaSgS~DgtVrIWDl~t~--~~v~----~~~~~~~V 652 (755)
.....|+-.|+..|+.+..+. +. .+|..++-. +.+....+.|-.+..|..||.+-. +++. .+......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 356789999999999999997 33 335544321 112345566778899999998763 2332 12233567
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 653 tsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.+++-+.+| +||+|+.+|.|||||-- ++. .. ..+.+-..+|++|..+.||+ +|++++ +..|.|++
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~-g~~-AK-------T~lp~lG~pI~~iDvt~DGk-wilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRL-GKR-AK-------TALPGLGDPIIGIDVTADGK-WILATC-KTYLLLID 645 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeeccc-chh-hh-------hcCCCCCCCeeEEEecCCCc-EEEEee-cceEEEEE
Confidence 888888888 89999999999999943 221 11 11236678999999999998 444444 45677777
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.34 E-value=0.0086 Score=40.80 Aligned_cols=37 Identities=30% Similarity=0.549 Sum_probs=32.4
Q ss_pred CceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEE
Q 004404 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (755)
Q Consensus 558 k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWD 594 (755)
+++..+..|...|.++.|.+. ..+++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677789999999999987 7899999999999996
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.27 E-value=0.76 Score=48.49 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=73.1
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEE---------------EeecCCceEEEE-EeeCCCcEEEEEECCCcE
Q 004404 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK---------------IFSHSDYVTCIQ-FNPVDDRYFISGSLDAKV 632 (755)
Q Consensus 570 V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~---------------~~~h~~~VtsVa-fsP~dg~~LaSgS~DgtV 632 (755)
|..|...|+ +.|++- .|+.++++++..-.... .+.....+..++ -....+...++.....+|
T Consensus 38 I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 778888777 554444 35999999987543332 222334455444 112134444555556699
Q ss_pred EEEECCCC-----cEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 633 RIWSIPER-----QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 633 rIWDl~t~-----~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
.+|..... +..+.+.....+.+++|. ++.|++|.. ....+.|+.++.....
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSEL 172 (275)
T ss_pred EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEE
Confidence 99887652 355666777899999999 668888874 4588899997766543
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.27 E-value=0.2 Score=56.73 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=68.6
Q ss_pred EEEecCC--cEEEEEeCCCc--EEEEECCCCcEEEEeec-CCceEEEEEeeCCCcEEEEEECC-Cc--EEEEECCCCcEE
Q 004404 572 DLSWSKS--QHLLSSSMDKT--VRLWHLSSKTCLKIFSH-SDYVTCIQFNPVDDRYFISGSLD-AK--VRIWSIPERQVV 643 (755)
Q Consensus 572 ~L~~spd--~~LaSgs~Dgt--VrLWDl~t~~~~~~~~h-~~~VtsVafsP~dg~~LaSgS~D-gt--VrIWDl~t~~~v 643 (755)
..+|+|+ ..+++...|+. |++.|+..+...+ +.+ .+.-+.=.|+| ||++++-.+.. |. |.++++......
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 3468887 33455566665 5566777666444 432 22223557899 88888776653 33 666777777665
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEEC-CCc--EEEEECCCCe
Q 004404 644 DWNDLHEMVTAACYTPDGQGALVGSY-KGS--CHLYNTSENK 682 (755)
Q Consensus 644 ~~~~~~~~VtsvafSPdG~~LasGs~-DG~--I~lwDl~~~~ 682 (755)
+.......-..-.|+|||++|+..+. +|. |.++|+.++.
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 44443333337889999999988664 344 6777776655
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.24 E-value=0.098 Score=59.21 Aligned_cols=160 Identities=15% Similarity=0.210 Sum_probs=99.5
Q ss_pred ceEEeccCCCCEEEEEecCCc-EEE-E-EeCC--CcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEE-ECCCc-
Q 004404 559 PICSFQGHLDDVLDLSWSKSQ-HLL-S-SSMD--KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG-SLDAK- 631 (755)
Q Consensus 559 ~i~~l~gH~~~V~~L~~spd~-~La-S-gs~D--gtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSg-S~Dgt- 631 (755)
....+..-...+..-+|+|++ .++ . -... ..+.++++.+++........+.-..-+|+| |+++|+.+ ..||.
T Consensus 184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~ 262 (425)
T COG0823 184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSP 262 (425)
T ss_pred ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCc
Confidence 333444444556677888872 222 2 1122 359999999988777776555566678999 77766654 45665
Q ss_pred -EEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEEC-CC--cEEEEECCCCeeeeccccccccccccCCCCCeEEEE
Q 004404 632 -VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (755)
Q Consensus 632 -VrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~-DG--~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (755)
|.+.|+..++..++....+.-+.=.|+|||++|+-.+. .| .|++++++........ .....-..-.
T Consensus 263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT----------~~~~~~~~p~ 332 (425)
T COG0823 263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT----------FSGGGNSNPV 332 (425)
T ss_pred cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee----------ccCCCCcCcc
Confidence 66668888876666655555567889999999888654 33 3777888777653321 1111111567
Q ss_pred EccCCCeEEEEEECCCc--EEEEE
Q 004404 708 FAPGSSSEVLVTSADSR--IRVVD 729 (755)
Q Consensus 708 fsPdg~~~L~sgs~Dg~--IrVWD 729 (755)
|+|+|+.+++....+|. |.+.|
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~ 356 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKND 356 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEec
Confidence 89999944444433454 44444
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.21 E-value=0.53 Score=51.15 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=67.5
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCC-CcEEEEee---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-----
Q 004404 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE----- 639 (755)
Q Consensus 569 ~V~~L~~spd~~LaSgs~DgtVrLWDl~t-~~~~~~~~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t----- 639 (755)
.|+++.... ++++.|..-+.|.++..+. ...+..+. ....++++.|-+ +++.++.+..+|.|.++....
T Consensus 131 ~i~sl~~~~-~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~ 208 (321)
T PF03178_consen 131 YITSLSVFK-NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNS 208 (321)
T ss_dssp SEEEEEEET-TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SST
T ss_pred EEEEEeccc-cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCccc
Confidence 466666553 5888898888888885543 33344443 556789999987 557999999999999998752
Q ss_pred --C--cE--EEeccCCCCEEEE---EEcc--CCC------EEEEEECCCcEEEE
Q 004404 640 --R--QV--VDWNDLHEMVTAA---CYTP--DGQ------GALVGSYKGSCHLY 676 (755)
Q Consensus 640 --~--~~--v~~~~~~~~Vtsv---afSP--dG~------~LasGs~DG~I~lw 676 (755)
+ ++ ...+.....|+++ ++.| .+. .++.++.+|.|...
T Consensus 209 ~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 209 RDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 2 22 2445556778888 5555 222 48888899998843
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.15 E-value=0.0014 Score=74.22 Aligned_cols=151 Identities=16% Similarity=0.186 Sum_probs=103.6
Q ss_pred CEEEEEecCC---cEEEEEeCCCcEEEEECCCCcEE-EEe--ecCCceEEEEEeeCCCcEEEEEEC----CCcEEEEECC
Q 004404 569 DVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCL-KIF--SHSDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIP 638 (755)
Q Consensus 569 ~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~~~~-~~~--~h~~~VtsVafsP~dg~~LaSgS~----DgtVrIWDl~ 638 (755)
.+.|+++.-+ ..++.|..+|.|-+-.++...-. +.+ ++..+.++++|++.|.+.||.|-. |-.+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 4667766543 46889999999999988754322 222 488899999999977788887743 5669999998
Q ss_pred CCc--EE---Eecc-CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 639 ERQ--VV---DWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 639 t~~--~v---~~~~-~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
++- +. .+.. ......++||-.+.+.+++|.....++++|++....... .-.++.|.++...|-.
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~----------svnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS----------SVNTKYVQGITVDPFS 207 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh----------hhhhhhcccceecCCC
Confidence 762 21 1111 334566899999999999999999999999983221111 0223445666666632
Q ss_pred CeEEEEEECCCcEEEEEC
Q 004404 713 SSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 713 ~~~L~sgs~Dg~IrVWD~ 730 (755)
..++++- .|+.|-+||+
T Consensus 208 ~nY~cs~-~dg~iAiwD~ 224 (783)
T KOG1008|consen 208 PNYFCSN-SDGDIAIWDT 224 (783)
T ss_pred CCceecc-ccCceeeccc
Confidence 2255544 4999999993
No 358
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.99 E-value=2.6 Score=46.69 Aligned_cols=297 Identities=12% Similarity=0.066 Sum_probs=124.3
Q ss_pred ecCCCcEEEEeCCCc--EEEEeeCCCCcccceeeeeEeeccc-CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeee
Q 004404 417 TDDSQDVSFHGQERV--RVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (755)
Q Consensus 417 ~~ds~~~l~sg~~dg--~Vriwd~~~~~~~~~~~~q~l~gH~-~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~ 493 (755)
..++..+++.+..++ .+...|+.+++..++.. +. .......++|+.+.|+-.-....|+--|+.+.+...-
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd------g~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD------GPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECcc------CCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 455666667665544 45556676666554443 21 2223466778888877665667888888888764322
Q ss_pred eecccccCccccEEEeecCCCCceeccccCCCceeeeccccccc---ccccccCcccccceeeecCCCceEEeccCCCCE
Q 004404 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN---RKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570 (755)
Q Consensus 494 l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~---~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V 570 (755)
+ ..+ .. ....-......+++.++.......-. ........ .......+.+ ...++.......+..-...+
T Consensus 118 y-~~p-~~-~~g~gt~v~n~d~t~~~g~e~~~~d~-~~l~~~~~f~e~~~a~p~~~i---~~idl~tG~~~~v~~~~~wl 190 (386)
T PF14583_consen 118 Y-EVP-DD-WKGYGTWVANSDCTKLVGIEISREDW-KPLTKWKGFREFYEARPHCRI---FTIDLKTGERKVVFEDTDWL 190 (386)
T ss_dssp E-E---TT-EEEEEEEEE-TTSSEEEEEEEEGGG------SHHHHHHHHHC---EEE---EEEETTT--EEEEEEESS-E
T ss_pred E-ECC-cc-cccccceeeCCCccEEEEEEEeehhc-cCccccHHHHHHHhhCCCceE---EEEECCCCceeEEEecCccc
Confidence 2 111 11 11111111233445443321111000 00000000 0000000000 12233344455555556678
Q ss_pred EEEEecCC--cEEEEEeC---CC-cEEEEECCC-CcEEEEee-c--CCceEEEEEeeCCCcEEEEEEC-----CCcEEEE
Q 004404 571 LDLSWSKS--QHLLSSSM---DK-TVRLWHLSS-KTCLKIFS-H--SDYVTCIQFNPVDDRYFISGSL-----DAKVRIW 635 (755)
Q Consensus 571 ~~L~~spd--~~LaSgs~---Dg-tVrLWDl~t-~~~~~~~~-h--~~~VtsVafsP~dg~~LaSgS~-----DgtVrIW 635 (755)
.-+.|+|. ..|+-|-+ +. .-|||-+++ +...+.+. + ...+.-=-|.| ||..|.--+. +..|.-+
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEEEEE
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCCCCceEEEee
Confidence 88999996 55555543 22 236676553 23333332 2 22344445788 7765544222 3356677
Q ss_pred ECCCCcEEEeccCCCCEEEEEEccCCCEEEE-EECC---------------CcEEEEECCCCeeeeccccccccccccCC
Q 004404 636 SIPERQVVDWNDLHEMVTAACYTPDGQGALV-GSYK---------------GSCHLYNTSENKLQQKSPINLQNKKKRSH 699 (755)
Q Consensus 636 Dl~t~~~v~~~~~~~~VtsvafSPdG~~Las-Gs~D---------------G~I~lwDl~~~~~~~~~~i~~~~~~~~~h 699 (755)
|+.+++...+... ....-+-.++||++++- |+.. --|+++++..+.......-...-..+.++
T Consensus 270 d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~ 348 (386)
T PF14583_consen 270 DPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD 348 (386)
T ss_dssp -TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTB
T ss_pred CCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCC
Confidence 8887765443332 24556667789988765 3321 14677888876654221100000001111
Q ss_pred CC-CeEEEEEccCCCeEEEEEECCCcEEEE
Q 004404 700 QR-KITGFQFAPGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 700 ~~-~Vtsl~fsPdg~~~L~sgs~Dg~IrVW 728 (755)
.. .=....|+||++..|++....|...||
T Consensus 349 ~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 349 RQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp SSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 11 124578999999777777778877776
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.94 E-value=1.4 Score=53.17 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=85.9
Q ss_pred eeecCCCceEEeccCCCC-EEEEEecC------CcEEEEEeCCCcEEEEECCCCc--EEE----EeecCCceEEEEEeeC
Q 004404 552 VFALSDKPICSFQGHLDD-VLDLSWSK------SQHLLSSSMDKTVRLWHLSSKT--CLK----IFSHSDYVTCIQFNPV 618 (755)
Q Consensus 552 v~~~s~k~i~~l~gH~~~-V~~L~~sp------d~~LaSgs~DgtVrLWDl~t~~--~~~----~~~h~~~VtsVafsP~ 618 (755)
+..-.++.+..+..|... |..++-.. +...+.|-.+..+..||.+-.. ++. .+......+|++-..
T Consensus 509 mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~- 587 (794)
T PF08553_consen 509 MDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE- 587 (794)
T ss_pred EecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC-
Confidence 333467778888877654 55554321 1346678888999999988532 332 222555678887764
Q ss_pred CCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 004404 619 DDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (755)
Q Consensus 619 dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl 678 (755)
..+||.|+.+|.||+||-...+... +.....+|..|..+.||++|++.+ +..|.|++.
T Consensus 588 -~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 588 -DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred -CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 5689999999999999954333222 335578999999999999999887 556777775
No 360
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.94 E-value=3.7 Score=49.75 Aligned_cols=157 Identities=10% Similarity=0.073 Sum_probs=91.1
Q ss_pred EEEEeCCCcEEEEECCCCc--EEEEeecCCceEEEEEeeCCCcEEEEEECC--------------CcEEEEECCCCcEEE
Q 004404 581 LLSSSMDKTVRLWHLSSKT--CLKIFSHSDYVTCIQFNPVDDRYFISGSLD--------------AKVRIWSIPERQVVD 644 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~--~~~~~~h~~~VtsVafsP~dg~~LaSgS~D--------------gtVrIWDl~t~~~v~ 644 (755)
|+++. .+.+++..++.-+ .+++..-......+++.+ ....+.+.+.- ..++++|-++-+.+.
T Consensus 687 l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~ 764 (1096)
T KOG1897|consen 687 LASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS 764 (1096)
T ss_pred EEEec-CCceEEEEecchhhcceeeecCCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence 44443 4567777666432 233444555667777776 34444443321 137778877776665
Q ss_pred eccCC--C---CEEEEEEccC-CCEEEEEEC----------CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEE
Q 004404 645 WNDLH--E---MVTAACYTPD-GQGALVGSY----------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (755)
Q Consensus 645 ~~~~~--~---~VtsvafSPd-G~~LasGs~----------DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (755)
..... + .+.++.|.-| +.++++|+. .|.|.+|.+...+.+.... ...-.+.|.++.-
T Consensus 765 ~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~-------e~~v~Gav~aL~~ 837 (1096)
T KOG1897|consen 765 SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA-------ETVVKGAVYALVE 837 (1096)
T ss_pred eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee-------eeeeccceeehhh
Confidence 44333 2 4556668887 788888863 5788888887732222110 1122345555543
Q ss_pred ccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEE
Q 004404 709 APGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 709 sPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs 750 (755)
-. | .+.++-...|++|+ ..+.++.-..|.+.++.+.+.
T Consensus 838 fn-g---kllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~ 877 (1096)
T KOG1897|consen 838 FN-G---KLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQ 877 (1096)
T ss_pred hC-C---eEEEecCcEEEEEEccccceehhhhcccCCeEEEEEE
Confidence 33 3 23455667899999 344777777787777776654
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.91 E-value=2.6 Score=47.66 Aligned_cols=172 Identities=12% Similarity=0.168 Sum_probs=93.3
Q ss_pred eeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee--------cCCceEEEEEeeCCCcE
Q 004404 551 TVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVDDRY 622 (755)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~--------h~~~VtsVafsP~dg~~ 622 (755)
.++...++++..+.-..+.|.++.|..+..|+.-..||+++++|+. |+....+. ....+..+.+.. +|-.
T Consensus 64 ~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~-~Giv 141 (410)
T PF04841_consen 64 QIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK-NGIV 141 (410)
T ss_pred EEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC-CCEE
Confidence 4555566666655444488999999999889999999999999986 33311111 112222223332 3422
Q ss_pred EEEEECCCcEEEEECCCCc-EEE-eccCCC---------CEEE-EEEccCCCEEEEEECCCcEEEEECCCCeeeeccccc
Q 004404 623 FISGSLDAKVRIWSIPERQ-VVD-WNDLHE---------MVTA-ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (755)
Q Consensus 623 LaSgS~DgtVrIWDl~t~~-~v~-~~~~~~---------~Vts-vafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~ 690 (755)
++ ..++.|.+.+--... ... ...... .... ..++.+....+....++.+++.+-...+.
T Consensus 142 vL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------- 212 (410)
T PF04841_consen 142 VL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------- 212 (410)
T ss_pred EE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-------
Confidence 22 334444443322211 111 101110 1111 23444444444444455555333222111
Q ss_pred cccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEeecC
Q 004404 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGE 740 (755)
Q Consensus 691 ~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~~GH 740 (755)
....+++..++.+|+++ +|+.-..+|.+.|... .+.+..+.-.
T Consensus 213 ------i~~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 213 ------IDSDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred ------ccCCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecC
Confidence 02346899999999998 7888889999999873 4455555443
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.42 Score=50.14 Aligned_cols=226 Identities=19% Similarity=0.211 Sum_probs=121.4
Q ss_pred cEEEEeeCCCCcccceeee---eEeecccCCEEEEEEcCCCCEEEEEECC-----CcEEEEeCcCC-ceeeeeecccccC
Q 004404 431 VRVRQYGKSCKDLTALYKC---QEIQAHNGSIWSIKFSLDGRYLASAGED-----CVIHVWQVVES-ERKGELLEKQEDG 501 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~---q~l~gH~~~I~sI~fSpdg~~LaTgs~D-----GtVrVWdl~t~-~~~~~l~~~~~~~ 501 (755)
....++|....+....... +-+.||. .|||||.+|+..-.| |.|-|||...+ +.+.++. .
T Consensus 91 tf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~-----t 159 (366)
T COG3490 91 TFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS-----T 159 (366)
T ss_pred ceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccc-----c
Confidence 3345566655443322221 2345664 499999998876443 78999998643 3344442 1
Q ss_pred ccccEEEeecCCCCceeccccCCCceeee-cccccccccccccCcccccceeee-cCCCceE--Eec--cCCCCEEEEEe
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKK-RRGRSINRKSLSLDHMVVPETVFA-LSDKPIC--SFQ--GHLDDVLDLSW 575 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~-~~~~~~~~~s~s~d~~~~~~~v~~-~s~k~i~--~l~--gH~~~V~~L~~ 575 (755)
+----..+.+.+||..++....+ |+.. ..++ ..++++.+-....+.+ .++..+. ++. -+.-.|..|..
T Consensus 160 ~GiGpHev~lm~DGrtlvvanGG--IethpdfgR----~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~ 233 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVANGG--IETHPDFGR----TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI 233 (366)
T ss_pred CCcCcceeEEecCCcEEEEeCCc--eecccccCc----cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence 21222345677888888775332 1111 1111 1122222221112222 3333332 222 34556788888
Q ss_pred cCCcEEEEEeC------CCcEEEEECCCCcEEEEee--------cCCceEEEEEeeCCCcEEEEEEC-CCcEEEEECCCC
Q 004404 576 SKSQHLLSSSM------DKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPER 640 (755)
Q Consensus 576 spd~~LaSgs~------DgtVrLWDl~t~~~~~~~~--------h~~~VtsVafsP~dg~~LaSgS~-DgtVrIWDl~t~ 640 (755)
.+++.++.+.. |---.+=....++.++.+. ...+|-+|+.+- +..+++..+- .+...+||..++
T Consensus 234 g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 234 GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeEEEEEcCCC
Confidence 88877776653 1111122223445554443 346888999987 4455554444 455779999999
Q ss_pred cEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEE
Q 004404 641 QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677 (755)
Q Consensus 641 ~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwD 677 (755)
.++......+ ...+ .+...-+++.+.+|.|.+|.
T Consensus 313 ~vv~~a~l~d-aaGv--a~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 313 AVVSEAALPD-AAGV--AAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred cEEecccccc-cccc--eeccCceEEecCCceEEecc
Confidence 9886544332 1122 23344577777889999883
No 363
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.85 E-value=2.6 Score=49.24 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=39.6
Q ss_pred CcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccc
Q 004404 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 630 gtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
|.|.-+|+.+++++-......+...-.+.-.+..+++++.+|.++.+|.++|+.+....
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 45778888888776433333221111122245577788889999999999999987654
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.82 E-value=0.17 Score=57.59 Aligned_cols=140 Identities=12% Similarity=0.077 Sum_probs=80.4
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEE-ECCCCcEEE
Q 004404 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW-SIPERQVVD 644 (755)
Q Consensus 566 H~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIW-Dl~t~~~v~ 644 (755)
..-....|.++|++.++....||.-.|+.....+... + +.-..++|.+ .+ .+|+-....+|.|+ ++.... ..
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-~---G~g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~~~~-~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-F---GSGLSFVWSS-RN-RYAVLESSSTIKIYKNFKNEV-VK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-E---EE-SEEEE-T-SS-EEEEE-TTS-EEEEETTEE-T-T-
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-c---CceeEEEEec-Cc-cEEEEECCCeEEEEEcCcccc-ce
Confidence 3445788999999776666888999999854444322 2 3345577887 44 46777778899996 332222 11
Q ss_pred eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCc
Q 004404 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (755)
Q Consensus 645 ~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~ 724 (755)
.+.....+..+-. |..|+..+.+ .|.+||+.+++.+..+.+ .+|..+.|++++. +++..+.+ .
T Consensus 104 ~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----------~~vk~V~Ws~~g~-~val~t~~-~ 166 (443)
T PF04053_consen 104 SIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV-----------SAVKYVIWSDDGE-LVALVTKD-S 166 (443)
T ss_dssp ----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS------------E-EEEEE-TTSS-EEEEE-S--S
T ss_pred EEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec-----------CCCcEEEEECCCC-EEEEEeCC-e
Confidence 2222333444443 8888777644 899999999999887542 2489999999998 67766654 7
Q ss_pred EEEEE
Q 004404 725 IRVVD 729 (755)
Q Consensus 725 IrVWD 729 (755)
+.|++
T Consensus 167 i~il~ 171 (443)
T PF04053_consen 167 IYILK 171 (443)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 78876
No 365
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.80 E-value=0.51 Score=48.82 Aligned_cols=107 Identities=14% Similarity=0.034 Sum_probs=83.7
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCE-EEEEE
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMV-TAACY 657 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~V-tsvaf 657 (755)
.+++.|+..+.+.--|..+|..+..-.-...|.+-+.- -+++++.|...|.+++.+.+++.....+..-+.| .....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 57888999999999999999887766566666665554 3678999999999999999999655433333322 34556
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCeeeecc
Q 004404 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 658 SPdG~~LasGs~DG~I~lwDl~~~~~~~~~ 687 (755)
.+++..+..|++|+..+..|.++...+...
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccceEEec
Confidence 788999999999999999999988877653
No 366
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.73 E-value=3.1 Score=43.29 Aligned_cols=98 Identities=10% Similarity=-0.027 Sum_probs=60.7
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecc
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~ 497 (755)
.+++-.++.|+..+++.--|.+++.+.-... + ...|-+-+.- -|.+++.|...|.+.+-++.++++...+...
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~i---l---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI---L---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehh---h---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 4556778899999999988888776542221 1 1223222222 4778999999999999999999776665322
Q ss_pred cccCccccEEEeecCCCCceeccccCCCce
Q 004404 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i 527 (755)
...+ ......+++.++..++.++.+
T Consensus 93 ~~vk-----~~a~~d~~~glIycgshd~~~ 117 (354)
T KOG4649|consen 93 ETVK-----VRAQCDFDGGLIYCGSHDGNF 117 (354)
T ss_pred hhhc-----cceEEcCCCceEEEecCCCcE
Confidence 1111 112234455566666555554
No 367
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.72 E-value=0.7 Score=48.83 Aligned_cols=171 Identities=9% Similarity=0.205 Sum_probs=112.0
Q ss_pred ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC
Q 004404 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (755)
Q Consensus 564 ~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~ 640 (755)
.|-...|.+|.|+|+ +.|++......-.||=...|+.+.++. .-...-.|.+.- ++.+.++--.+..+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 344556999999998 778777777777787777899999886 333445677776 7777777777888888876554
Q ss_pred cE-E---------EeccC-CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccccc-ccccccCCCCCeEEEEE
Q 004404 641 QV-V---------DWNDL-HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL-QNKKKRSHQRKITGFQF 708 (755)
Q Consensus 641 ~~-v---------~~~~~-~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~-~~~~~~~h~~~Vtsl~f 708 (755)
.. + ....+ +...-.++|.|....|+++-...-+.||.+............. +.....---..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 21 1 11122 4567899999999999999888888888776433111111000 00000011245788889
Q ss_pred ccCCCeEEEEEECCCcEEEEE-CCcceE
Q 004404 709 APGSSSEVLVTSADSRIRVVD-GIDLVH 735 (755)
Q Consensus 709 sPdg~~~L~sgs~Dg~IrVWD-~~~ll~ 735 (755)
.+....+|+.+-.++.+.-.| .++.+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~~~~ 268 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGEVIE 268 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCCeee
Confidence 987665677777777777777 444443
No 368
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.36 E-value=1.6 Score=49.08 Aligned_cols=177 Identities=16% Similarity=0.217 Sum_probs=97.9
Q ss_pred CEEEEEecCC-cEEEEEeCCCcEEEEECCCCc-------------------------------------------EEEEe
Q 004404 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-------------------------------------------CLKIF 604 (755)
Q Consensus 569 ~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~-------------------------------------------~~~~~ 604 (755)
.|+.+.|.++ ..|+++...|.|-||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4788888887 788888888888888643110 00111
Q ss_pred e-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec---c------CCCCEEEEEEcc-----CC---CEEEE
Q 004404 605 S-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN---D------LHEMVTAACYTP-----DG---QGALV 666 (755)
Q Consensus 605 ~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~---~------~~~~VtsvafSP-----dG---~~Las 666 (755)
. ..++|++++.+ |=-+++.|..+|.+.|.|++...++... . ....++++.|+. |+ -.|++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 1 45789999987 5679999999999999999988876332 2 124688888863 33 57899
Q ss_pred EECCCcEEEEECCC-CeeeeccccccccccccCCCCCeEEEE-EccC-----------------C--CeEEEEEECCCcE
Q 004404 667 GSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQ-FAPG-----------------S--SSEVLVTSADSRI 725 (755)
Q Consensus 667 Gs~DG~I~lwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~-fsPd-----------------g--~~~L~sgs~Dg~I 725 (755)
|+..|.+.+|.+-- ..-. +...+.... ..+..+|..+. |..+ + -..+++...+..|
T Consensus 161 GTn~G~v~~fkIlp~~~g~--f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGR--FSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EETTSEEEEEEEEE-GGG---EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EeCCCCEEEEEEecCCCCc--eEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 99999999998741 1111 111111111 24556666665 3211 0 0135566667899
Q ss_pred EEEEC--CcceEEeecCCccEEEEEEE
Q 004404 726 RVVDG--IDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 726 rVWD~--~~ll~~~~GH~~~V~sv~fs 750 (755)
||+.. .+..++.....-.+..+++.
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv 264 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVV 264 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEE
T ss_pred EEEeCCCCcccceeeccccccceEEEE
Confidence 99994 44555554332234444444
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=1.1 Score=49.98 Aligned_cols=154 Identities=13% Similarity=0.191 Sum_probs=107.5
Q ss_pred EEEEecCC-c-EEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEEC---CCcEEEEECCCCcEEEe
Q 004404 571 LDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL---DAKVRIWSIPERQVVDW 645 (755)
Q Consensus 571 ~~L~~spd-~-~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~---DgtVrIWDl~t~~~v~~ 645 (755)
..++.++. . .++....+..|.+.|..+.+..+...-......++++| +++.++.+.. ++++.+.|..+..+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 34556665 3 45555557999999988888888887555788999999 7766666555 68999999999888866
Q ss_pred ccCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC--
Q 004404 646 NDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-- 722 (755)
Q Consensus 646 ~~~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D-- 722 (755)
.........++++|+|+.+++.. .++.|.+.|........ .... ....-...-..+.+.|+|....++...+
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~----~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG----SLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc----cccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 54444449999999999777765 78899999987766653 1100 0012233456788999998433333333
Q ss_pred CcEEEEEC
Q 004404 723 SRIRVVDG 730 (755)
Q Consensus 723 g~IrVWD~ 730 (755)
+.+.+.|.
T Consensus 231 ~~v~~id~ 238 (381)
T COG3391 231 NNVLKIDT 238 (381)
T ss_pred ceEEEEeC
Confidence 58888883
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.26 E-value=0.28 Score=57.87 Aligned_cols=150 Identities=13% Similarity=0.105 Sum_probs=85.8
Q ss_pred CCEEEEEecCCc-EEEEEe------CCC--cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC---------
Q 004404 568 DDVLDLSWSKSQ-HLLSSS------MDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD--------- 629 (755)
Q Consensus 568 ~~V~~L~~spd~-~LaSgs------~Dg--tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D--------- 629 (755)
..+...+++|++ .++..- .|. .|.+++.. +.. ..+......+.-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEecc
Confidence 457788899984 443333 243 45555542 222 3333233478889999 88877776533
Q ss_pred ---CcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEE---EECCCCeeeeccccccccccccCCCCCe
Q 004404 630 ---AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL---YNTSENKLQQKSPINLQNKKKRSHQRKI 703 (755)
Q Consensus 630 ---gtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~l---wDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (755)
+.+.+.++..+.... .....|..+.|||||..|+.-. +|.|++ -....|.........+ ...-...+
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l----~~~l~~~~ 499 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV----GPGLGDTA 499 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe----ecccCCcc
Confidence 223333444333322 3456799999999999988866 578877 4544554211111000 01233446
Q ss_pred EEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 704 TGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 704 tsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
..+.|.+++. |+++..++...+|-
T Consensus 500 ~~l~W~~~~~--L~V~~~~~~~~v~~ 523 (591)
T PRK13616 500 VSLDWRTGDS--LVVGRSDPEHPVWY 523 (591)
T ss_pred ccceEecCCE--EEEEecCCCCceEE
Confidence 8899999986 44555555455554
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.20 E-value=1.8 Score=46.88 Aligned_cols=167 Identities=12% Similarity=0.083 Sum_probs=99.2
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCcEEEEee------cCCceEEEEEeeCCCcEEEEEEC-----------CCcEEEEECC
Q 004404 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFS------HSDYVTCIQFNPVDDRYFISGSL-----------DAKVRIWSIP 638 (755)
Q Consensus 576 spd~~LaSgs~DgtVrLWDl~t~~~~~~~~------h~~~VtsVafsP~dg~~LaSgS~-----------DgtVrIWDl~ 638 (755)
...+.|+++.. -+++++..++..+..+. .....+.+...| ++.+.++... -|.|+.++.
T Consensus 75 d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p- 150 (307)
T COG3386 75 DAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP- 150 (307)
T ss_pred cCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-
Confidence 33466666544 36777776665533331 234567888888 7776554333 133444443
Q ss_pred CCcEEEeccC-CCCEEEEEEccCCCEEEEEEC-CCcEEEEECCC--CeeeeccccccccccccCCCCCeEEEEEccCCCe
Q 004404 639 ERQVVDWNDL-HEMVTAACYTPDGQGALVGSY-KGSCHLYNTSE--NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (755)
Q Consensus 639 t~~~v~~~~~-~~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~--~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~ 714 (755)
.+..++.... -...+.|+||||++.|+.+.. .+.|+-|++.. +....... ........+..-+++...+|.
T Consensus 151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~----~~~~~~~~G~PDG~~vDadG~- 225 (307)
T COG3386 151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG----FVDFDEEPGLPDGMAVDADGN- 225 (307)
T ss_pred CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce----EEEccCCCCCCCceEEeCCCC-
Confidence 4555544433 456789999999988888765 47888888763 11111100 001112345556677777776
Q ss_pred EEEEEECCC-cEEEEE-CCcceEEeecCCccEEEEEEEE
Q 004404 715 EVLVTSADS-RIRVVD-GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 715 ~L~sgs~Dg-~IrVWD-~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+.+++-.+| .|.+|+ .++++..++-....+.+.+|..
T Consensus 226 lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeC
Confidence 333444443 899999 5788888888877777777643
No 372
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.19 E-value=0.82 Score=50.49 Aligned_cols=172 Identities=13% Similarity=0.206 Sum_probs=98.4
Q ss_pred eeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-c-----------------CCceEE
Q 004404 551 TVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-H-----------------SDYVTC 612 (755)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h-----------------~~~Vts 612 (755)
.++++..+.+..+......+....|+|++..++--.++.|.+++..++...+.-. . -+.-..
T Consensus 26 ~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~ 105 (353)
T PF00930_consen 26 YIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSA 105 (353)
T ss_dssp EEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBS
T ss_pred EEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccc
Confidence 4555666666665555677889999999655555567899999988774443221 1 122357
Q ss_pred EEEeeCCCcEEEEEECCCc------------------------------------EEEEECCCCcEEEe------ccCCC
Q 004404 613 IQFNPVDDRYFISGSLDAK------------------------------------VRIWSIPERQVVDW------NDLHE 650 (755)
Q Consensus 613 VafsP~dg~~LaSgS~Dgt------------------------------------VrIWDl~t~~~v~~------~~~~~ 650 (755)
+-|+| |+++|+....|.+ +.|+|+.+++...+ .....
T Consensus 106 ~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~ 184 (353)
T PF00930_consen 106 VWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDY 184 (353)
T ss_dssp EEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSE
T ss_pred eEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCcc
Confidence 78999 8988887654321 34455555443211 12234
Q ss_pred CEEEEEEccCCCEEEEE--ECC---CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEc-cCCCeEEEEEECCCc
Q 004404 651 MVTAACYTPDGQGALVG--SYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA-PGSSSEVLVTSADSR 724 (755)
Q Consensus 651 ~VtsvafSPdG~~LasG--s~D---G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs-Pdg~~~L~sgs~Dg~ 724 (755)
.+..+.|.++++.|++. ..+ -.+.++|+.++........ ...+--..-..+.|. +++..+|.....||-
T Consensus 185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-----~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-----TSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-----ESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-----cCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 68899999999845443 222 2367788877654433211 111222222345554 777767777777776
Q ss_pred EEEE
Q 004404 725 IRVV 728 (755)
Q Consensus 725 IrVW 728 (755)
-+||
T Consensus 260 ~hly 263 (353)
T PF00930_consen 260 RHLY 263 (353)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 5554
No 373
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.75 E-value=3.2 Score=42.59 Aligned_cols=219 Identities=13% Similarity=0.170 Sum_probs=118.3
Q ss_pred CCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCC---CEEEEEECCCcEEEEeCc--CCceeee
Q 004404 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG---RYLASAGEDCVIHVWQVV--ESERKGE 493 (755)
Q Consensus 419 ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg---~~LaTgs~DGtVrVWdl~--t~~~~~~ 493 (755)
..+.+++.--..+.|.-||..+++.... .+.+-. +.++.|--.+ .+.+.++..-.|.=||.. ......+
T Consensus 25 ~~~sLl~VDi~ag~v~r~D~~qn~v~ra----~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t 98 (310)
T KOG4499|consen 25 ERQSLLYVDIEAGEVHRYDIEQNKVYRA----KIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRT 98 (310)
T ss_pred ecceEEEEEeccCceehhhhhhhheEEE----EEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeee
Confidence 3445677777888888898876443322 233221 3333332222 355566655556668843 2233334
Q ss_pred eecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEE
Q 004404 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (755)
Q Consensus 494 l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L 573 (755)
+.........+.......+|+|++......+...........+ ..|. .+..+..+...-+--+.|
T Consensus 99 ~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~L--------------y~~~-~~h~v~~i~~~v~IsNgl 163 (310)
T KOG4499|consen 99 LFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGEL--------------YSWL-AGHQVELIWNCVGISNGL 163 (310)
T ss_pred ccccCchHHhcccccCccCCCCceeeeeeccccccccccccEE--------------EEec-cCCCceeeehhccCCccc
Confidence 3322233334555566778888875443222111111111000 1111 111222222222334578
Q ss_pred EecCC--cEEEEEeCCCcEEEEE--CCCCcE-----EEEeec-----CCceEEEEEeeCCCcEEEEEECCCcEEEEECCC
Q 004404 574 SWSKS--QHLLSSSMDKTVRLWH--LSSKTC-----LKIFSH-----SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (755)
Q Consensus 574 ~~spd--~~LaSgs~DgtVrLWD--l~t~~~-----~~~~~h-----~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t 639 (755)
+|+.+ .+.++-+.+-+|.-|| ..+|.. +..+.. .-..-.++... +|++++++-..++|...|..+
T Consensus 164 ~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~t 242 (310)
T KOG4499|consen 164 AWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTT 242 (310)
T ss_pred cccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCC
Confidence 88876 4566777888898888 445432 222221 11123445555 789999999999999999999
Q ss_pred CcEEEeccC-CCCEEEEEEcc
Q 004404 640 RQVVDWNDL-HEMVTAACYTP 659 (755)
Q Consensus 640 ~~~v~~~~~-~~~VtsvafSP 659 (755)
++.+..+.. ...|+++||--
T Consensus 243 GK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 243 GKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CcEEEEEEcCCCceEEEEecC
Confidence 998855444 46899999964
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=0.49 Score=53.38 Aligned_cols=136 Identities=14% Similarity=0.188 Sum_probs=94.0
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCc-------EEEEEECCCcEEEEECCCCc--EEEeccC---
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDR-------YFISGSLDAKVRIWSIPERQ--VVDWNDL--- 648 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~-------~LaSgS~DgtVrIWDl~t~~--~v~~~~~--- 648 (755)
|.++..-..++-.|+..|+.+........|+-+.+.| +.+ .-+.|-.|..|.-||.+-.. .+.+...
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 4455566789999999999999998555588888888 432 23446678889999987432 2333222
Q ss_pred --CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEE
Q 004404 649 --HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (755)
Q Consensus 649 --~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~Ir 726 (755)
.....|.+-..+| +||+|+.+|.|||||- .+....+. +.+-..+|+.|..+.+|+ +|+ |.-+..+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTA--------lPgLG~~I~hVdvtadGK-wil-~Tc~tyLl 495 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTA--------LPGLGDAIKHVDVTADGK-WIL-ATCKTYLL 495 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhc--------ccccCCceeeEEeeccCc-EEE-EecccEEE
Confidence 2345666666666 8999999999999997 33322211 236778999999999997 444 44456677
Q ss_pred EEE
Q 004404 727 VVD 729 (755)
Q Consensus 727 VWD 729 (755)
+.+
T Consensus 496 Li~ 498 (644)
T KOG2395|consen 496 LID 498 (644)
T ss_pred EEE
Confidence 766
No 375
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.49 E-value=1.5 Score=46.10 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=89.0
Q ss_pred CEEEEEecCC-cEEEEEe-CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEE-CCCCc--EE
Q 004404 569 DVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWS-IPERQ--VV 643 (755)
Q Consensus 569 ~V~~L~~spd-~~LaSgs-~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWD-l~t~~--~v 643 (755)
.+...+++++ +.++... .++.-.||-...+...........+..-.|.+ ++...+....+...+++. ..++. .+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 6888999998 4444433 24444444444443333332334788889999 777776666667777773 33332 22
Q ss_pred --EeccCCCCEEEEEEccCCCEEEEEE---CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 644 --DWNDLHEMVTAACYTPDGQGALVGS---YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 644 --~~~~~~~~VtsvafSPdG~~LasGs---~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
.+......|+++.+||||..++.-. .++.|++--+....--....+.............++.+.|.+++. +++.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-L~V~ 182 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-LVVL 182 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-EEEE
Confidence 2222223899999999998888755 357777776542211100000001111123456899999999986 4444
Q ss_pred E-ECCCcEEE
Q 004404 719 T-SADSRIRV 727 (755)
Q Consensus 719 g-s~Dg~IrV 727 (755)
+ ..+..+..
T Consensus 183 ~~~~~~~~~~ 192 (253)
T PF10647_consen 183 GRSAGGPVVR 192 (253)
T ss_pred eCCCCCceeE
Confidence 4 44554443
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.48 E-value=2.1 Score=50.72 Aligned_cols=126 Identities=11% Similarity=0.109 Sum_probs=70.7
Q ss_pred CcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEE---EECCCCcEE-----Eec-cCCCCEEEEEEc
Q 004404 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRI---WSIPERQVV-----DWN-DLHEMVTAACYT 658 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrI---WDl~t~~~v-----~~~-~~~~~VtsvafS 658 (755)
+.+.+.++..+.... .....|..+.|+| ||..++... +++|.+ -....+... .+. .....+.++.|.
T Consensus 430 gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 430 GQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred ceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 445555665554433 3456799999999 998888766 577776 343444311 111 222346889999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEE
Q 004404 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (755)
Q Consensus 659 PdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrV 727 (755)
.++.++ ++..++...+|.+.-....... + .-......+..|+-.+. .|+++..++.+.+
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~-~-----~~~n~~~~v~~vaa~~~---~iyv~~~~g~~~l 564 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDA-L-----PSRNLSAPVVAVAASPS---TVYVTDARAVLQL 564 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCccccc-c-----CCCCccCceEEEecCCc---eEEEEcCCceEEe
Confidence 999854 6555554445544322111110 0 00113566777777763 4666666665544
No 377
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.98 E-value=0.53 Score=57.33 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=91.2
Q ss_pred CEEEEEecCC---cEEEEEeCCCcEEEEECCCCcE-----EEEe-------ecCCceEEEEEeeCCCcEEEEEECCCcEE
Q 004404 569 DVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTC-----LKIF-------SHSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (755)
Q Consensus 569 ~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~~~-----~~~~-------~h~~~VtsVafsP~dg~~LaSgS~DgtVr 633 (755)
.|..+...++ ..++..+.+-.|..||+.+-.. ...| .....+.++.|+|.-...++.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3444555555 3344555566899999874211 1111 13445678899995455677888899999
Q ss_pred EEECCCCcE-EEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 634 IWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 634 IWDl~t~~~-v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
+..+..... +.........++++|+|.|+.+++|-..|++.-|-..-.... .++ .+ .. .....|.+|.|...-
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~-~ip-~P---p~-~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS-EIP-EP---PV-EENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceee-ccc-CC---Cc-CCCcceeEEEEecce
Confidence 988765433 344566678999999999999999999999999876543211 111 00 01 125789999998765
Q ss_pred C
Q 004404 713 S 713 (755)
Q Consensus 713 ~ 713 (755)
.
T Consensus 256 e 256 (1405)
T KOG3630|consen 256 E 256 (1405)
T ss_pred e
Confidence 4
No 378
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.77 E-value=17 Score=42.47 Aligned_cols=54 Identities=4% Similarity=0.101 Sum_probs=38.3
Q ss_pred cEEEEECCCCcEEEEee---cCC-------ceEEEEEeeCCCc---EEEEEECCCcEEEEECCCCcEE
Q 004404 589 TVRLWHLSSKTCLKIFS---HSD-------YVTCIQFNPVDDR---YFISGSLDAKVRIWSIPERQVV 643 (755)
Q Consensus 589 tVrLWDl~t~~~~~~~~---h~~-------~VtsVafsP~dg~---~LaSgS~DgtVrIWDl~t~~~v 643 (755)
.|.-.|+++|+..-.|+ |.. ...-+.+.. +++ .++.+..+|.+.+.|..+++++
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 57777889999888776 221 122222222 554 7889999999999999999875
No 379
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.65 E-value=3.7 Score=43.56 Aligned_cols=173 Identities=12% Similarity=0.110 Sum_probs=99.8
Q ss_pred eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeec
Q 004404 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (755)
Q Consensus 452 l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~ 531 (755)
+.+-...|.++.|+|+.+.|++......-.||=..+++.+..++.... .-.-.+.+..++.+.++...+..+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----~DpE~Ieyig~n~fvi~dER~~~l---- 152 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----SDPETIEYIGGNQFVIVDERDRAL---- 152 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc----CChhHeEEecCCEEEEEehhcceE----
Confidence 455566699999999999999998888888888888887777642211 111122333333333333333222
Q ss_pred ccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCc-EE--EEe-ec
Q 004404 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-CL--KIF-SH 606 (755)
Q Consensus 532 ~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~-~~--~~~-~h 606 (755)
....+..+......... .-++..........-.++|.|. ..|+.+=+-+-+.||.+.... .+ +.. .+
T Consensus 153 -----~~~~vd~~t~~~~~~~~---~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~ 224 (316)
T COG3204 153 -----YLFTVDADTTVISAKVQ---KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP 224 (316)
T ss_pred -----EEEEEcCCccEEeccce---EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCc
Confidence 22222222111100000 0011111222455778999997 778888887888888766432 11 111 11
Q ss_pred -------CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC
Q 004404 607 -------SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (755)
Q Consensus 607 -------~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~ 640 (755)
-..|.++.|++..+.+|+-+.+++.+.-.|....
T Consensus 225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 2357888999867778888888888888886544
No 380
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.61 E-value=0.23 Score=37.96 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=31.0
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe
Q 004404 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (755)
Q Consensus 646 ~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~ 682 (755)
......|..++|+|...+||.|+.+|.|.+|.+ +++
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 344567999999999999999999999999998 443
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.56 E-value=12 Score=39.76 Aligned_cols=233 Identities=12% Similarity=0.123 Sum_probs=127.8
Q ss_pred EEEEcCCC-CEEEEEECCCc-EEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccc
Q 004404 461 SIKFSLDG-RYLASAGEDCV-IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (755)
Q Consensus 461 sI~fSpdg-~~LaTgs~DGt-VrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~ 538 (755)
.|+|+|.- .-++.+-.-|+ ..++|....+....+... ......-.-.|+++|.+|.....+..- ++.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~---~~RHfyGHGvfs~dG~~LYATEndfd~-----~rG--- 140 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ---EGRHFYGHGVFSPDGRLLYATENDFDP-----NRG--- 140 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc---cCceeecccccCCCCcEEEeecCCCCC-----CCc---
Confidence 46777743 34555555554 467888776655554311 111222234678999888776443210 000
Q ss_pred cccccCcccccceeeecC--CCceEEeccCCCCEEEEEecCCcEEEEEeCCC-------------------cEEEEECCC
Q 004404 539 KSLSLDHMVVPETVFALS--DKPICSFQGHLDDVLDLSWSKSQHLLSSSMDK-------------------TVRLWHLSS 597 (755)
Q Consensus 539 ~s~s~d~~~~~~~v~~~s--~k~i~~l~gH~~~V~~L~~spd~~LaSgs~Dg-------------------tVrLWDl~t 597 (755)
+ .-+++.. -..+-++..|.-....+.|.+|+.+++....| ++.+.|..+
T Consensus 141 -------V---iGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 141 -------V---IGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred -------e---EEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 0 0223322 23456677888888889999986655443322 344455455
Q ss_pred CcEEEEee-----cCCceEEEEEeeCCCcEEEEEECCCc-----EEEEECCCCcEEEeccC--------CCCEEEEEEcc
Q 004404 598 KTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSLDAK-----VRIWSIPERQVVDWNDL--------HEMVTAACYTP 659 (755)
Q Consensus 598 ~~~~~~~~-----h~~~VtsVafsP~dg~~LaSgS~Dgt-----VrIWDl~t~~~v~~~~~--------~~~VtsvafSP 659 (755)
+.++.... +.-.|..++..+ |+..++-+-..|. -.+=-...++.+..... ...|-+++.+.
T Consensus 211 G~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~ 289 (366)
T COG3490 211 GNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR 289 (366)
T ss_pred cchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc
Confidence 55544332 344577777776 6655544433221 11111122333333322 25688888887
Q ss_pred CCCEEEEEECCC-cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 660 DGQGALVGSYKG-SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 660 dG~~LasGs~DG-~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+..+++..+-.| ...+||..++..+....+ ..+.+++-...| +++.+.+|.|.++.
T Consensus 290 ~~glV~lTSP~GN~~vi~da~tG~vv~~a~l-----------~daaGva~~~~g---f~vssg~G~~~~~s 346 (366)
T COG3490 290 RDGLVALTSPRGNRAVIWDAATGAVVSEAAL-----------PDAAGVAAAKGG---FAVSSGQGRIIFYS 346 (366)
T ss_pred cCCeEEEecCCCCeEEEEEcCCCcEEecccc-----------cccccceeccCc---eEEecCCceEEecc
Confidence 655666555544 567899999998875432 223344444443 77788889988775
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=0.36 Score=58.48 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=71.7
Q ss_pred cEEEEEeCCCcEEEEECCCCcE--EEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-CCC---CE
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTC--LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHE---MV 652 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~--~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-~~~---~V 652 (755)
..++.|+..|.|-+.|+...-+ .+-....++|++++|+. ++.+++.|-.+|.|.+||+..+++.+.+. +.. .|
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 4578888888898888876422 22223678999999999 99999999999999999999988775443 333 34
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 653 TAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 653 tsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
.-+.+..++..++++...|. +|.+.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 44555556667888887776 55543
No 383
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.51 E-value=9 Score=40.39 Aligned_cols=132 Identities=8% Similarity=0.045 Sum_probs=84.6
Q ss_pred EEEEEecCCc-EEEEEeCCC--cEEEEECCCCcEEEEeecCC--ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE
Q 004404 570 VLDLSWSKSQ-HLLSSSMDK--TVRLWHLSSKTCLKIFSHSD--YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (755)
Q Consensus 570 V~~L~~spd~-~LaSgs~Dg--tVrLWDl~t~~~~~~~~h~~--~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~ 644 (755)
...+.|..++ .+-+.+.-| .|+.+|+.+++.+....-.. .--.|+.. +++++.-.=.++...+||..+-+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 4568885554 455666655 79999999999887765332 33445554 34555555568899999999998887
Q ss_pred eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEc
Q 004404 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (755)
Q Consensus 645 ~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (755)
.+.....=+.++ .||+.|+.......|+++|..+.+....+.+.... ..-..++.+.|.
T Consensus 125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g----~pv~~LNELE~i 183 (264)
T PF05096_consen 125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG----RPVSNLNELEYI 183 (264)
T ss_dssp EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT----EE---EEEEEEE
T ss_pred EEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC----EECCCcEeEEEE
Confidence 776666666777 56888999888889999999988887766543211 122346666666
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=0.42 Score=57.93 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=72.1
Q ss_pred CCcEEEEEECCCcEEEEECCCCcE--EEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccc
Q 004404 619 DDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK 696 (755)
Q Consensus 619 dg~~LaSgS~DgtVrIWDl~t~~~--v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~ 696 (755)
-+..++.|+..|.|-..|+...-. .+-.....+|++++|+.+|..++.|-.+|.|.+||+..++..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-------- 169 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-------- 169 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee--------
Confidence 346788899999999998876421 2333445799999999999999999999999999999988887654
Q ss_pred cCCCCCeEEE---EEccCCCeEEEEEECCCcEEEEE
Q 004404 697 RSHQRKITGF---QFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 697 ~~h~~~Vtsl---~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.|..+.+++ .+..++. .++++..-|. +|.
T Consensus 170 -e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 170 -EHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWK 201 (1206)
T ss_pred -ecCCccceEEEEEEeCCCc-EEEEccCCCc--eEE
Confidence 333333333 3444444 6777766665 665
No 385
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.67 E-value=20 Score=39.95 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=62.4
Q ss_pred cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC---C-cEEEEECC--CCcEEEeccC--CCCEEEEEEccC
Q 004404 589 TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD---A-KVRIWSIP--ERQVVDWNDL--HEMVTAACYTPD 660 (755)
Q Consensus 589 tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D---g-tVrIWDl~--t~~~v~~~~~--~~~VtsvafSPd 660 (755)
.|.--|+.+|+....+..+..+.-+.|+|.+..+|+-|-+. . .-|||-++ .........+ ...+.-=-|.||
T Consensus 169 ~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~D 248 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPD 248 (386)
T ss_dssp EEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TT
T ss_pred eEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCC
Confidence 36666888998888888889999999999777777777642 2 13566543 3333333222 234555568999
Q ss_pred CCEEEEEE-----CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 661 GQGALVGS-----YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 661 G~~LasGs-----~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
|..|.--+ .+..|.-+|+.+++.....+ ......+.-+++|. |++|
T Consensus 249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-----------~p~~~H~~ss~Dg~--L~vG 299 (386)
T PF14583_consen 249 GSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-----------MPWCSHFMSSPDGK--LFVG 299 (386)
T ss_dssp SS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-----------E-SEEEEEE-TTSS--EEEE
T ss_pred CCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-----------CCceeeeEEcCCCC--EEEe
Confidence 97666522 24457778888776543211 11233455578886 5554
No 386
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.59 E-value=16 Score=39.89 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=45.6
Q ss_pred cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEE-CCCcEEEEECCCCcEEEeccC
Q 004404 589 TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQVVDWNDL 648 (755)
Q Consensus 589 tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWDl~t~~~v~~~~~ 648 (755)
.|.++|+.+++.+..+....++.+|+.+..+..+|++.+ .++.|.+||..+++.+.....
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 488889999999999986778889999995555776655 478999999999998865543
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.36 E-value=0.4 Score=36.66 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=29.3
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc
Q 004404 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~ 489 (755)
...|.+++|+|...+||.+..+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 443
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.35 E-value=0.32 Score=49.49 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=65.8
Q ss_pred cEEEEEeCCCcEEEEECCC-CcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCC--CEEE
Q 004404 579 QHLLSSSMDKTVRLWHLSS-KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE--MVTA 654 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t-~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~--~Vts 654 (755)
..+++|+.+|.|++|.... +.....+. ....|.++--.-.++.+.+++..||.||.|++.-.+.+....++. .+..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 6799999999999998762 11111111 223333332222245689999999999999998888776555443 4444
Q ss_pred EEEccCCCEEEEE--ECCCcEEEEECCCC
Q 004404 655 ACYTPDGQGALVG--SYKGSCHLYNTSEN 681 (755)
Q Consensus 655 vafSPdG~~LasG--s~DG~I~lwDl~~~ 681 (755)
+..+..+++|+.+ +.+..+++|++...
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhhh
Confidence 5555555666666 66777777776543
No 389
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.28 E-value=23 Score=39.76 Aligned_cols=243 Identities=16% Similarity=0.138 Sum_probs=119.1
Q ss_pred CEEEEEEcCCCCEEEEE-ECCC----cEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecc
Q 004404 458 SIWSIKFSLDGRYLASA-GEDC----VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (755)
Q Consensus 458 ~I~sI~fSpdg~~LaTg-s~DG----tVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~ 532 (755)
.+..+.++|||++||-+ +..| +|+|.|+.+++.+...... .....+.|.+++..+.....+..-...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~------~~~~~~~W~~d~~~~~y~~~~~~~~~~-- 196 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN------PKFSSVSWSDDGKGFFYTRFDEDQRTS-- 196 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE------EESEEEEECTTSSEEEEEECSTTTSS---
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc------cccceEEEeCCCCEEEEEEeCcccccc--
Confidence 34468899999988755 3434 5999999998665432110 111127888887766554333211000
Q ss_pred cccccccccccCccccccee--eecC---CCceEEeccCCCC--EEEEEecCC-cEEE-EEeCC---CcEEEEECCCC--
Q 004404 533 GRSINRKSLSLDHMVVPETV--FALS---DKPICSFQGHLDD--VLDLSWSKS-QHLL-SSSMD---KTVRLWHLSSK-- 598 (755)
Q Consensus 533 ~~~~~~~s~s~d~~~~~~~v--~~~s---~k~i~~l~gH~~~--V~~L~~spd-~~La-Sgs~D---gtVrLWDl~t~-- 598 (755)
....+..+ +.+. .+-...|...... ...+..+++ .+|+ ..... ..|++.++..+
T Consensus 197 ------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 197 ------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp ------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred ------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 00000111 1111 1112233333322 567888888 4444 33333 34888888874
Q ss_pred ---cEEEEeecCCceEEEEEeeCCCcEEEEEE---CCCcEEEEECCCCcE---E-EeccCCCCEEEEEEccCCCEEEEE-
Q 004404 599 ---TCLKIFSHSDYVTCIQFNPVDDRYFISGS---LDAKVRIWSIPERQV---V-DWNDLHEMVTAACYTPDGQGALVG- 667 (755)
Q Consensus 599 ---~~~~~~~h~~~VtsVafsP~dg~~LaSgS---~DgtVrIWDl~t~~~---v-~~~~~~~~VtsvafSPdG~~LasG- 667 (755)
...........+....-+. ++.+++... ..+.|...++.+... . .+..+...+.-..+...+.+|+..
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~ 343 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSY 343 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEE
T ss_pred CcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEE
Confidence 4444444455554444343 444444432 235677778776542 2 344444433333344445566554
Q ss_pred ECCC--cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC---CCcEEEEE
Q 004404 668 SYKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA---DSRIRVVD 729 (755)
Q Consensus 668 s~DG--~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~---Dg~IrVWD 729 (755)
..++ .|++|++..+.......+ .-.+.|..+...++++.+.+.-+. -.+|..||
T Consensus 344 ~~~~~~~l~v~~~~~~~~~~~~~~--------p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d 402 (414)
T PF02897_consen 344 RENGSSRLRVYDLDDGKESREIPL--------PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYD 402 (414)
T ss_dssp EETTEEEEEEEETT-TEEEEEEES--------SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEE
T ss_pred EECCccEEEEEECCCCcEEeeecC--------CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 3444 488999983333333221 223456676666666644444433 34566777
No 390
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.26 E-value=24 Score=39.96 Aligned_cols=146 Identities=12% Similarity=0.116 Sum_probs=81.1
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-------------------
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE------------------- 639 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t------------------- 639 (755)
.++.+=+.||++.+|+-+.-...+.+..---...++|.| ..+.|++++.+..|.-|....
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~ 224 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS 224 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence 568889999999999977655555554322234457888 778899999999999887521
Q ss_pred -CcEE---EeccCCCCEEEEEEcc---CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCe--EEE--EE
Q 004404 640 -RQVV---DWNDLHEMVTAACYTP---DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI--TGF--QF 708 (755)
Q Consensus 640 -~~~v---~~~~~~~~VtsvafSP---dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~V--tsl--~f 708 (755)
++.+ -.+...+.+..+..-. .-..+++-+ ...+...+.. |.+.... ++....... ..+ ..
T Consensus 225 ~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G~l~~~k-------rLd~~p~~~~~Y~~~~~~ 295 (418)
T PF14727_consen 225 SGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-GSLRFQK-------RLDYNPSCFCPYRVPWYN 295 (418)
T ss_pred ccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-CeEEEEE-------ecCCceeeEEEEEeeccc
Confidence 1110 1122234444444322 222333333 4556666553 4443322 121221111 112 11
Q ss_pred ccCCCeEEEEEECCCcEEEEECCcce
Q 004404 709 APGSSSEVLVTSADSRIRVVDGIDLV 734 (755)
Q Consensus 709 sPdg~~~L~sgs~Dg~IrVWD~~~ll 734 (755)
.|+....+++++.++++.||...+++
T Consensus 296 ~~~~~~~llV~t~t~~LlVy~d~~L~ 321 (418)
T PF14727_consen 296 EPSTRLNLLVGTHTGTLLVYEDTTLV 321 (418)
T ss_pred CCCCceEEEEEecCCeEEEEeCCeEE
Confidence 23322359999999999999854443
No 391
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=0.88 Score=51.40 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=78.0
Q ss_pred EEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCE-------EEEEECCCcEEEEECCCCeeeeccccccccc
Q 004404 622 YFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQG-------ALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694 (755)
Q Consensus 622 ~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~-------LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~ 694 (755)
+|.++.....|+-.|+..|+++.....+..|+-+.+.|+.+. -++|-.+..|.-||++-...- .+.+ .+.+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~-~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAV-VQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeee-eecc
Confidence 344555667788889999999965555666888889887632 345777899999998833221 0000 0001
Q ss_pred cccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEE
Q 004404 695 KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCI 749 (755)
Q Consensus 695 ~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~f 749 (755)
. ......-.+++-..+| +|++||.+|.||+|| ...--.-|.|...+|..|..
T Consensus 426 q-y~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdv 479 (644)
T KOG2395|consen 426 Q-YSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDV 479 (644)
T ss_pred c-cccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEe
Confidence 1 1223345666666666 799999999999999 22333345566666555543
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.73 E-value=0.44 Score=48.53 Aligned_cols=139 Identities=15% Similarity=0.062 Sum_probs=81.4
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-CcEEEec-cCCCCE-EEEEE
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWN-DLHEMV-TAACY 657 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-~~~v~~~-~~~~~V-tsvaf 657 (755)
|..-+.|+.|+-++++..+....- ...+.+..--+.-+..+++|+.+|.|.+|+... +...... ....+| +.+.-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rs--e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRS--ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhh--hhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 556667788888877643221111 111111111122456799999999999998762 1111111 112222 22333
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCC-CCeEEEEEccCCCeEEEEE--ECCCcEEEEECC
Q 004404 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSSEVLVT--SADSRIRVVDGI 731 (755)
Q Consensus 658 SPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~-~~Vtsl~fsPdg~~~L~sg--s~Dg~IrVWD~~ 731 (755)
..++.+..++..+|.||.|++.-.+.+.... .|. ..+..+..+..+. .+..+ |.|..++.|+..
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---------~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---------QHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeec---------cccCCCcceeEEecCCc-eEEeeccccchhhhhcchh
Confidence 3355688889999999999998877665421 344 4555555555554 56666 778888888743
No 393
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.48 E-value=28 Score=39.08 Aligned_cols=243 Identities=12% Similarity=0.131 Sum_probs=119.3
Q ss_pred eeecCCCcEEE----EeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCC-----------c
Q 004404 415 SATDDSQDVSF----HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC-----------V 479 (755)
Q Consensus 415 s~~~ds~~~l~----sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DG-----------t 479 (755)
..+.++..+++ .|++...|+++|+.+++...- .+..-. -..+.|.+|++.|+....+. .
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d----~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD----GIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE----EEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC----cccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34456665554 356667899999988854321 122211 12399999988776665433 3
Q ss_pred EEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC--
Q 004404 480 IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-- 557 (755)
Q Consensus 480 VrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~-- 557 (755)
|..|.+.+......++-...... .....+..++++..+........-. ..+ .+..+..
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~-~~~~~~~~s~d~~~l~i~~~~~~~~-----s~v--------------~~~d~~~~~ 263 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEP-FWFVSVSRSKDGRYLFISSSSGTSE-----SEV--------------YLLDLDDGG 263 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCT-TSEEEEEE-TTSSEEEEEEESSSSE-----EEE--------------EEEECCCTT
T ss_pred EEEEECCCChHhCeeEEeecCCC-cEEEEEEecCcccEEEEEEEccccC-----CeE--------------EEEeccccC
Confidence 78888877655433321111111 1355677788877766432222110 000 1111111
Q ss_pred ---CceEEeccCCCCE-EEEEecCCcEEEEEeC---CCcEEEEECCCCcE---E-EEeecCC--ceEEEEEeeCCCcEEE
Q 004404 558 ---KPICSFQGHLDDV-LDLSWSKSQHLLSSSM---DKTVRLWHLSSKTC---L-KIFSHSD--YVTCIQFNPVDDRYFI 624 (755)
Q Consensus 558 ---k~i~~l~gH~~~V-~~L~~spd~~LaSgs~---DgtVrLWDl~t~~~---~-~~~~h~~--~VtsVafsP~dg~~La 624 (755)
.....+..+...+ ..+....+.+++.... .+.|...++..... . ..+.+.. .+..+... .+.+++
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl 341 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVL 341 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEE
Confidence 1222233233333 3333332333333322 35566667776542 2 3344555 35555543 345555
Q ss_pred EEECCC--cEEEEECC-CCcEEEecc-CCCCEEEEEEccCCCEEEEE--EC--CCcEEEEECCCCeeee
Q 004404 625 SGSLDA--KVRIWSIP-ERQVVDWND-LHEMVTAACYTPDGQGALVG--SY--KGSCHLYNTSENKLQQ 685 (755)
Q Consensus 625 SgS~Dg--tVrIWDl~-t~~~v~~~~-~~~~VtsvafSPdG~~LasG--s~--DG~I~lwDl~~~~~~~ 685 (755)
.-..++ .|+++++. +........ ..+.|..+...+++..+... +. -++++.||+.+++...
T Consensus 342 ~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 342 SYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 555555 48889998 444433322 33446666666666555442 22 3568899999887654
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.47 E-value=34 Score=41.89 Aligned_cols=158 Identities=11% Similarity=0.084 Sum_probs=91.4
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCceE-------------EEEEee-CCCcEEEEEEC----------CCcEEE
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVT-------------CIQFNP-VDDRYFISGSL----------DAKVRI 634 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~Vt-------------sVafsP-~dg~~LaSgS~----------DgtVrI 634 (755)
++++.++.|+.|.-.|..+|+.+..|..++.|. .+.-.| ..+..++.|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 678889999999999999999988776544331 111111 02345666643 688999
Q ss_pred EECCCCcEEEeccCC----------C--------CE-EEEEEccCCCEEEEEE------------------CCCcEEEEE
Q 004404 635 WSIPERQVVDWNDLH----------E--------MV-TAACYTPDGQGALVGS------------------YKGSCHLYN 677 (755)
Q Consensus 635 WDl~t~~~v~~~~~~----------~--------~V-tsvafSPdG~~LasGs------------------~DG~I~lwD 677 (755)
+|+++++++-..... + .+ ..+++.|....++.+. ..+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999987322110 0 11 2345566554554432 134566678
Q ss_pred CCCCeeeecccccccc-ccccCCCCCe-EEEEEccCCC--eEEEEEECCCcEEEEE--CCcceEEe
Q 004404 678 TSENKLQQKSPINLQN-KKKRSHQRKI-TGFQFAPGSS--SEVLVTSADSRIRVVD--GIDLVHKF 737 (755)
Q Consensus 678 l~~~~~~~~~~i~~~~-~~~~~h~~~V-tsl~fsPdg~--~~L~sgs~Dg~IrVWD--~~~ll~~~ 737 (755)
+++|+....++..... -.+.....++ ..+. ..+|+ ..++.++.+|.+.++| +++++-..
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 8888877665531100 0000111111 2222 12442 2688889999999999 57766543
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.12 E-value=3.3 Score=47.69 Aligned_cols=148 Identities=13% Similarity=0.202 Sum_probs=91.1
Q ss_pred CCEEEEEecCC-cEEEEEe--CCCcEEEEECCCCcEEEEeecCCceEEEEEeeC---CCcEEEEEECCCcEEEEECCC--
Q 004404 568 DDVLDLSWSKS-QHLLSSS--MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV---DDRYFISGSLDAKVRIWSIPE-- 639 (755)
Q Consensus 568 ~~V~~L~~spd-~~LaSgs--~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~---dg~~LaSgS~DgtVrIWDl~t-- 639 (755)
.+|..++|... +.+++.- ..|.+++=| ... ++.-..|..+.|.|. +...+++......|.||.+.-
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~v---iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKV---IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccE---eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 46788999754 3344432 233333322 122 333356889999982 233566667788999998742
Q ss_pred ---CcEE--EeccCCC----CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEcc
Q 004404 640 ---RQVV--DWNDLHE----MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (755)
Q Consensus 640 ---~~~v--~~~~~~~----~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsP 710 (755)
.+.+ ++....+ -...+.|+|....|++-+....-.++++..........+ ...+.|.+.+|.+
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi--------~~~G~IhCACWT~ 165 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI--------KTSGLIHCACWTK 165 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec--------cCCceEEEEEecC
Confidence 2222 2222222 235688999999988877666656777765444333222 4567899999999
Q ss_pred CCCeEEEEEECCCcEEEEE
Q 004404 711 GSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 711 dg~~~L~sgs~Dg~IrVWD 729 (755)
||+.++++.+..=.-+|||
T Consensus 166 DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred cCCEEEEEeCCeEEEEEec
Confidence 9995444446555678999
No 396
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.05 E-value=16 Score=41.15 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=71.3
Q ss_pred CcEEEEECCCCcEEEEee----cCCceEEEEEeeCCCcEEEEEEC--------------------CCcEEEEECCCCcEE
Q 004404 588 KTVRLWHLSSKTCLKIFS----HSDYVTCIQFNPVDDRYFISGSL--------------------DAKVRIWSIPERQVV 643 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~----h~~~VtsVafsP~dg~~LaSgS~--------------------DgtVrIWDl~t~~~v 643 (755)
|-+.+.|-++.+...... ....-..+-|.| ..+.++|... ..++.+||+.+.+++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~ 235 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL 235 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe
Confidence 346677766666665554 233456778888 7788888643 357999999999999
Q ss_pred EeccCCC---CEEEEEEcc--CCCEEEEEE-CCCcEEE-EECCCCeeeeccccccccccc------------cCCCCCeE
Q 004404 644 DWNDLHE---MVTAACYTP--DGQGALVGS-YKGSCHL-YNTSENKLQQKSPINLQNKKK------------RSHQRKIT 704 (755)
Q Consensus 644 ~~~~~~~---~VtsvafSP--dG~~LasGs-~DG~I~l-wDl~~~~~~~~~~i~~~~~~~------------~~h~~~Vt 704 (755)
+.+.... .+..|.|.. +..+-++|+ ...+|.. |....+.-.....+.++.++. ..-..-|+
T Consensus 236 Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 236 QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 8877763 566677755 444444433 3445544 443555544433333332221 11235689
Q ss_pred EEEEccCCCeEEEEEECCCcEEEEE
Q 004404 705 GFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 705 sl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.|..+.|.+.+.+++=.+|.||.||
T Consensus 316 DI~iSlDDrfLYvs~W~~GdvrqYD 340 (461)
T PF05694_consen 316 DILISLDDRFLYVSNWLHGDVRQYD 340 (461)
T ss_dssp -EEE-TTS-EEEEEETTTTEEEEEE
T ss_pred eEEEccCCCEEEEEcccCCcEEEEe
Confidence 9999999985555666799999999
No 397
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.88 E-value=28 Score=38.09 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=44.0
Q ss_pred ccCCCCEEEEEEcc-------CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 646 NDLHEMVTAACYTP-------DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 646 ~~~~~~VtsvafSP-------dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
..++..++.+.|-+ .|.+|++.-..+.|....+..+......+ ..+.....++.+|++.|||. ++++
T Consensus 249 ~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~r~~~v~~~pDG~-Lyv~ 322 (331)
T PF07995_consen 249 YPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE-----EFLGGFGGRPRDVAQGPDGA-LYVS 322 (331)
T ss_dssp ETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE-----EECTTSSS-EEEEEEETTSE-EEEE
T ss_pred ecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE-----EccccCCCCceEEEEcCCCe-EEEE
Confidence 34445677777764 34455555556788888887554332211 11234555899999999997 5666
Q ss_pred EECCCcEE
Q 004404 719 TSADSRIR 726 (755)
Q Consensus 719 gs~Dg~Ir 726 (755)
...+|.|.
T Consensus 323 ~d~~G~iy 330 (331)
T PF07995_consen 323 DDSDGKIY 330 (331)
T ss_dssp E-TTTTEE
T ss_pred ECCCCeEe
Confidence 66788764
No 398
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.48 E-value=9.5 Score=42.35 Aligned_cols=98 Identities=7% Similarity=0.004 Sum_probs=56.7
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCC-----cEE---EEeec-----CCceEEEEEeeCCCcEEEEEECC------
Q 004404 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSK-----TCL---KIFSH-----SDYVTCIQFNPVDDRYFISGSLD------ 629 (755)
Q Consensus 569 ~V~~L~~spd~~LaSgs~DgtVrLWDl~t~-----~~~---~~~~h-----~~~VtsVafsP~dg~~LaSgS~D------ 629 (755)
..+.|++.+++ |+++......++.|.... +.. ..+.. ......++|.| |+.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 35677888778 555555543344454321 211 12221 24477899999 88766654411
Q ss_pred -------------CcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEE
Q 004404 630 -------------AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGS 668 (755)
Q Consensus 630 -------------gtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs 668 (755)
|.|.-++..+++...+.........++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 445566665555443333344567899999998877643
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.40 E-value=7.4 Score=40.04 Aligned_cols=140 Identities=13% Similarity=0.176 Sum_probs=79.7
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc---------CCCCEEEEEEccCCCEEEE-EECCCcEEEE
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND---------LHEMVTAACYTPDGQGALV-GSYKGSCHLY 676 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~---------~~~~VtsvafSPdG~~Las-Gs~DG~I~lw 676 (755)
....+.-..+| +|++++ |.....=-++....+.+..+.. .-..-+.++|+.+.+.+.. -+.+-.|.-|
T Consensus 108 knR~NDgkvdP-~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDP-DGRYYG-GTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCC-CCceee-eeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 44566667788 888844 3321111122222233332222 2234567899988766554 5667778666
Q ss_pred E--CCCCeeeecccc-ccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEE
Q 004404 677 N--TSENKLQQKSPI-NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 677 D--l~~~~~~~~~~i-~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs 750 (755)
| ..+|.+...-.+ .+.......|. .--+++...+|. +.+++-.-++|...| +++++..++-.+..+.+.||.
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCC-CCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 6 667665432211 11110001111 112334455665 666667778999999 699999999999999999985
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.98 E-value=7.4 Score=46.10 Aligned_cols=116 Identities=18% Similarity=0.240 Sum_probs=71.9
Q ss_pred eEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE--eccCCCCEEEEEEc--cCCCEEEEEECCCcEEEEECCCCeeee
Q 004404 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WNDLHEMVTAACYT--PDGQGALVGSYKGSCHLYNTSENKLQQ 685 (755)
Q Consensus 610 VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~--~~~~~~~VtsvafS--PdG~~LasGs~DG~I~lwDl~~~~~~~ 685 (755)
+.-+.-+. -++..++-+...++.|||.+.+.+.. .+...+.|..+.|. |+|+.+++.+....|.+|--.......
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33444443 34444444445579999999887653 33457899999985 588999998889999998642111000
Q ss_pred ccc--cccccccccCCC-CCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 686 KSP--INLQNKKKRSHQ-RKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 686 ~~~--i~~~~~~~~~h~-~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
..+ ..+.......|+ .+|.+..|.++|. |++|+ .+.+.|+|
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFD 154 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCe--EEEEe-CCEEEEEC
Confidence 000 011112223444 5799999999984 55554 46889988
No 401
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.91 E-value=8.6 Score=36.24 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=71.2
Q ss_pred EEEeeCCCcEEEEEECCCcEEEEECCCC--------cEEEeccCCCCEEEEEEcc-----CCCEEEEEECCCcEEEEECC
Q 004404 613 IQFNPVDDRYFISGSLDAKVRIWSIPER--------QVVDWNDLHEMVTAACYTP-----DGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 613 VafsP~dg~~LaSgS~DgtVrIWDl~t~--------~~v~~~~~~~~VtsvafSP-----dG~~LasGs~DG~I~lwDl~ 679 (755)
-.|.. ....|++++.-|+|.|++.... ..+.+......|++++-.| +...|++|+ ...+..||+.
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 34554 4557888899999999987533 3456677778888887655 346777777 5679999999
Q ss_pred CCeeeeccccccccccccCCCCCeEEEEEccCC--CeEEEEEECCCcEEEEE
Q 004404 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS--SSEVLVTSADSRIRVVD 729 (755)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg--~~~L~sgs~Dg~IrVWD 729 (755)
...-+... .-...|.++.+-.-+ +..|+..+.+..|.-||
T Consensus 82 ~N~d~Fyk----------e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 82 NNSDLFYK----------EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFD 123 (136)
T ss_pred cCchhhhh----------hCccceeEEEEEecCCCCCcEEEECceEEEEEeC
Confidence 87765432 234667777763211 12466666778888888
No 402
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.49 E-value=12 Score=35.37 Aligned_cols=105 Identities=10% Similarity=0.148 Sum_probs=74.7
Q ss_pred cEEEEEeCCCcEEEEECC--------CCcEEEEeecCCceEEEEEeeC----CCcEEEEEECCCcEEEEECCCCcEEEec
Q 004404 579 QHLLSSSMDKTVRLWHLS--------SKTCLKIFSHSDYVTCIQFNPV----DDRYFISGSLDAKVRIWSIPERQVVDWN 646 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~--------t~~~~~~~~h~~~VtsVafsP~----dg~~LaSgS~DgtVrIWDl~t~~~v~~~ 646 (755)
..|+.++.-++|.|++.. ....+..+.-+..|++|+-.+. +.+.|+.|+ ...|..||+....-+...
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyk 89 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYK 89 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhh
Confidence 357788888999999865 3345677778889999987663 245677666 567899999988777777
Q ss_pred cCCCCEEEEEEcc----CCCEEEEEECCCcEEEEECCCCeeee
Q 004404 647 DLHEMVTAACYTP----DGQGALVGSYKGSCHLYNTSENKLQQ 685 (755)
Q Consensus 647 ~~~~~VtsvafSP----dG~~LasGs~DG~I~lwDl~~~~~~~ 685 (755)
..+..|.++.+-. ....+++| .+..|.-||....+...
T Consensus 90 e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 90 EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFW 131 (136)
T ss_pred hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEE
Confidence 7788888888743 23445554 46677777776665544
No 403
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.36 E-value=15 Score=37.56 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=87.7
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEECC--CCcEEEEeecCCceEEEEEeeCCCcEEEEEECCC------cEEEE---ECC
Q 004404 570 VLDLSWSKSQHLLSSSMDKTVRLWHLS--SKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA------KVRIW---SIP 638 (755)
Q Consensus 570 V~~L~~spd~~LaSgs~DgtVrLWDl~--t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~Dg------tVrIW---Dl~ 638 (755)
...++-...+.|+.+.....|.+|++. ..+.+..|..-+.|..+.++. .|+||++--.+. .+|+| ...
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 344555554555555677889999988 346677777779999999999 899999964432 56665 221
Q ss_pred --CCcEE--Ee---------------------ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeee-eccc-ccc
Q 004404 639 --ERQVV--DW---------------------NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ-QKSP-INL 691 (755)
Q Consensus 639 --t~~~v--~~---------------------~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~-~~~~-i~~ 691 (755)
....+ +. ......+.+++-.|-.--|++|+ ++.+.||.+...... ..+. +++
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEec
Confidence 11111 11 12234677788878443555565 678999988765442 1111 111
Q ss_pred ccccccCCCC-CeEEEEEccCCCeEEEEEECCCcEEEE
Q 004404 692 QNKKKRSHQR-KITGFQFAPGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 692 ~~~~~~~h~~-~Vtsl~fsPdg~~~L~sgs~Dg~IrVW 728 (755)
....+.-|.+ .+..+++..+ +++..+. -.++|+
T Consensus 178 e~~l~~~~~~~~p~~v~ic~~---yiA~~s~-~ev~Vl 211 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAICEG---YIAVMSD-LEVLVL 211 (215)
T ss_pred hhhhhheecCceEEEEEEEee---EEEEecC-CEEEEE
Confidence 1111112222 3566777654 5555544 345544
No 404
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.01 E-value=0.041 Score=64.82 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=21.4
Q ss_pred eecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCc
Q 004404 452 IQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVV 486 (755)
Q Consensus 452 l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~ 486 (755)
++|..+.|-.|.|-. +...++ -.=|...||++.
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd 161 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVD 161 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehH
Confidence 467888999999954 222222 233678899885
No 405
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.00 E-value=6.5 Score=44.15 Aligned_cols=134 Identities=13% Similarity=0.207 Sum_probs=65.8
Q ss_pred CCCcEEEEECCCCcEEEEeecC---CceEEEEEeeCCC---cEEEEEECCCcEEEEEC-CCCc-----EEEecc------
Q 004404 586 MDKTVRLWHLSSKTCLKIFSHS---DYVTCIQFNPVDD---RYFISGSLDAKVRIWSI-PERQ-----VVDWND------ 647 (755)
Q Consensus 586 ~DgtVrLWDl~t~~~~~~~~h~---~~VtsVafsP~dg---~~LaSgS~DgtVrIWDl-~t~~-----~v~~~~------ 647 (755)
...++.+||+.+.+.++++... ..+..|.|.. +. .-|+.+....+|..|-- ..++ ++.+-.
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH-~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLH-DPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-S-STT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecC-CCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 3468999999999999999733 2455677764 32 23555556667766644 3332 222111
Q ss_pred ----C-------CCCEEEEEEccCCCEEEEEEC-CCcEEEEECCCCeee-eccccccccccc---------cCCCCCeEE
Q 004404 648 ----L-------HEMVTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQ-QKSPINLQNKKK---------RSHQRKITG 705 (755)
Q Consensus 648 ----~-------~~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~~~~~-~~~~i~~~~~~~---------~~h~~~Vts 705 (755)
. ..-|+.+.+|.|.++|++.+. .|.|+.||+...... ..-++.+..... +.-.+...-
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 1 245899999999999999775 899999999874322 222211111100 011233466
Q ss_pred EEEccCCCeEEEEEE
Q 004404 706 FQFAPGSSSEVLVTS 720 (755)
Q Consensus 706 l~fsPdg~~~L~sgs 720 (755)
|+.+-||+.+.+|.|
T Consensus 379 vqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 379 VQLSLDGKRLYVTNS 393 (461)
T ss_dssp EEE-TTSSEEEEE--
T ss_pred EEEccCCeEEEEEee
Confidence 778888885455444
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.89 E-value=10 Score=42.20 Aligned_cols=137 Identities=12% Similarity=0.136 Sum_probs=76.5
Q ss_pred CCEEEEEecCCcEEEEEeC------------CC-cEEEEECCC--Cc--EEEEee-cCCceEEEEEeeCCCcEEEEEECC
Q 004404 568 DDVLDLSWSKSQHLLSSSM------------DK-TVRLWHLSS--KT--CLKIFS-HSDYVTCIQFNPVDDRYFISGSLD 629 (755)
Q Consensus 568 ~~V~~L~~spd~~LaSgs~------------Dg-tVrLWDl~t--~~--~~~~~~-h~~~VtsVafsP~dg~~LaSgS~D 629 (755)
.....|+|.+++.|+++.. .+ .|.+++-.. ++ ....|. .-...+.|++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 3467889999877777753 23 677776542 22 223443 344568899988 77 444 4444
Q ss_pred CcEEEEECCC-------CcEE-Eecc-----CCCCEEEEEEccCCCEEEEEEC-------------------CCcEEEEE
Q 004404 630 AKVRIWSIPE-------RQVV-DWND-----LHEMVTAACYTPDGQGALVGSY-------------------KGSCHLYN 677 (755)
Q Consensus 630 gtVrIWDl~t-------~~~v-~~~~-----~~~~VtsvafSPdG~~LasGs~-------------------DG~I~lwD 677 (755)
...++.|... .+.+ .-+. ++.....++|.|||.+.++-+. .|.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333445432 1112 2121 1345788999999976665331 14455566
Q ss_pred CCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
..+++.... ..+ .....+++|+|+|. ++++
T Consensus 171 pdg~~~e~~---------a~G-~rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 171 PDGGKLRVV---------AHG-FQNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred cCCCeEEEE---------ecC-cCCCccceECCCCC-EEEE
Confidence 655443211 012 23457899999987 4444
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.71 E-value=66 Score=39.17 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=30.3
Q ss_pred CCCCEEEEEecCC----cEEEEEeCCCcEEEEECCCC-cEEEEe
Q 004404 566 HLDDVLDLSWSKS----QHLLSSSMDKTVRLWHLSSK-TCLKIF 604 (755)
Q Consensus 566 H~~~V~~L~~spd----~~LaSgs~DgtVrLWDl~t~-~~~~~~ 604 (755)
+...|..+.|+|. .+|+.-..|+++|+||+... .+.+++
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeEEE
Confidence 4557899999995 68999999999999999753 333333
No 408
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.84 E-value=25 Score=38.32 Aligned_cols=159 Identities=12% Similarity=0.206 Sum_probs=91.2
Q ss_pred CCEEEEEecC-CcEEEEEeCCCc------EEEEECCC--C--cEEEE-----ee-cCC--------ceEEEEEeeCCCcE
Q 004404 568 DDVLDLSWSK-SQHLLSSSMDKT------VRLWHLSS--K--TCLKI-----FS-HSD--------YVTCIQFNPVDDRY 622 (755)
Q Consensus 568 ~~V~~L~~sp-d~~LaSgs~Dgt------VrLWDl~t--~--~~~~~-----~~-h~~--------~VtsVafsP~dg~~ 622 (755)
+.+..|.+.+ ++.+++.+.++. +..+++.. + ..+.. +. ..+ ..-+|++.+ ++.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCCE
Confidence 5578888885 488888888888 66666553 1 11111 11 111 334788855 8888
Q ss_pred EEEEECC------CcEEEEECCCCcEEEec----------------cCCCCEEEEEEccCCCEEEEEEC-----CC--c-
Q 004404 623 FISGSLD------AKVRIWSIPERQVVDWN----------------DLHEMVTAACYTPDGQGALVGSY-----KG--S- 672 (755)
Q Consensus 623 LaSgS~D------gtVrIWDl~t~~~v~~~----------------~~~~~VtsvafSPdG~~LasGs~-----DG--~- 672 (755)
+++--.+ ..|+.++.. +++...+ ..+..+-+|+++|+|+.|+++.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8877666 778888866 4443211 12346889999999997776543 22 1
Q ss_pred ------EEE--EECCC-CeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE-E----CCCcEEEEE
Q 004404 673 ------CHL--YNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-S----ADSRIRVVD 729 (755)
Q Consensus 673 ------I~l--wDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg-s----~Dg~IrVWD 729 (755)
++| ||..+ +.....+.+.+...........|+.+.+.++++ +|+.= + ....++||-
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEE
Confidence 444 45444 322222222221101111467899999999987 44432 2 234556654
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.63 E-value=46 Score=36.06 Aligned_cols=114 Identities=13% Similarity=0.210 Sum_probs=58.7
Q ss_pred cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE-EEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~-v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
..+.+..+..++ ++.+++++..-..+.-||--...- .........|.+|.|.|++...+++ ..|.|++=+.......
T Consensus 143 ~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 557788888888 899888876555566777543222 2233346789999999997665544 7888888772221111
Q ss_pred eccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEE
Q 004404 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrV 727 (755)
.... ........-.+..++|.+++. +.+++..|.+.+
T Consensus 221 w~~~----~~~~~~~~~~~ld~a~~~~~~--~wa~gg~G~l~~ 257 (302)
T PF14870_consen 221 WSEP----IIPIKTNGYGILDLAYRPPNE--IWAVGGSGTLLV 257 (302)
T ss_dssp E-------B-TTSS--S-EEEEEESSSS---EEEEESTT-EEE
T ss_pred cccc----cCCcccCceeeEEEEecCCCC--EEEEeCCccEEE
Confidence 1110 011123344589999999875 445555565544
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.56 E-value=5.7 Score=48.93 Aligned_cols=96 Identities=10% Similarity=0.082 Sum_probs=70.6
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEECCCC-cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe
Q 004404 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (755)
Q Consensus 569 ~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~-~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~ 645 (755)
-..++.|+|. ...+.+..|+.|++..+... .....+.....++|++|+| .|+.++.|-..|++.-|... .++...
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ 234 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSE 234 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeec
Confidence 3567889887 66888889999999887643 3334456778899999999 99999999999999888643 222211
Q ss_pred cc-----CCCCEEEEEEccCCCEEEE
Q 004404 646 ND-----LHEMVTAACYTPDGQGALV 666 (755)
Q Consensus 646 ~~-----~~~~VtsvafSPdG~~Las 666 (755)
+. ....|.+|+|-....+|++
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEE
Confidence 11 1357999999877767666
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.19 E-value=17 Score=42.15 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=74.9
Q ss_pred CCEEEEEecCC-----cEEEEEeCCCcEEEEECCC-----CcEE--EEeec--CC--ceEEEEEeeCCCcEEEEEECCCc
Q 004404 568 DDVLDLSWSKS-----QHLLSSSMDKTVRLWHLSS-----KTCL--KIFSH--SD--YVTCIQFNPVDDRYFISGSLDAK 631 (755)
Q Consensus 568 ~~V~~L~~spd-----~~LaSgs~DgtVrLWDl~t-----~~~~--~~~~h--~~--~VtsVafsP~dg~~LaSgS~Dgt 631 (755)
..|..++|.|- -.|++.-..+.|.+|.+.. .+.+ ++... .- --..+.||| ....|+.-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCce
Confidence 45899999984 3577778889999999852 2222 22222 11 234678999 7777776665555
Q ss_pred EEEEECCC--CcEEEeccCCCCEEEEEEccCCCEEEEEECC-CcEEEEECCCC
Q 004404 632 VRIWSIPE--RQVVDWNDLHEMVTAACYTPDGQGALVGSYK-GSCHLYNTSEN 681 (755)
Q Consensus 632 VrIWDl~t--~~~v~~~~~~~~VtsvafSPdG~~LasGs~D-G~I~lwDl~~~ 681 (755)
-.+++++. .++..-+...+-|.+.||.+||+.|+++-.. =.-++||-...
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 45666653 3333445677899999999999988886433 33578886543
No 412
>PHA02713 hypothetical protein; Provisional
Probab=86.70 E-value=7.4 Score=45.88 Aligned_cols=155 Identities=10% Similarity=0.057 Sum_probs=80.3
Q ss_pred CcEEEEEeCCC-----cEEEEECCCCcEEEE--eecCCceEEEEEeeCCCcEEEEEECCC--------------------
Q 004404 578 SQHLLSSSMDK-----TVRLWHLSSKTCLKI--FSHSDYVTCIQFNPVDDRYFISGSLDA-------------------- 630 (755)
Q Consensus 578 d~~LaSgs~Dg-----tVrLWDl~t~~~~~~--~~h~~~VtsVafsP~dg~~LaSgS~Dg-------------------- 630 (755)
+..++.||.++ +|..||..+.+-... +.....-.+++.. ++.+.+.|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccccc
Confidence 45566676653 488899876643321 1111111122221 677777777653
Q ss_pred ---cEEEEECCCCcEEEeccCCC-CEEEEEEccCCCEEEEEECC------CcEEEEECCC-CeeeeccccccccccccCC
Q 004404 631 ---KVRIWSIPERQVVDWNDLHE-MVTAACYTPDGQGALVGSYK------GSCHLYNTSE-NKLQQKSPINLQNKKKRSH 699 (755)
Q Consensus 631 ---tVrIWDl~t~~~v~~~~~~~-~VtsvafSPdG~~LasGs~D------G~I~lwDl~~-~~~~~~~~i~~~~~~~~~h 699 (755)
.|..||..+.+-........ .....+..-+|+..++|+.+ ..+..||..+ .+-.....++ ..
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-------~~ 502 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-------SR 502 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-------cc
Confidence 47778887765433222211 11111222357777777654 2467899887 5544332211 11
Q ss_pred CCCeEEEEEccCCCeEEEEEECCC--cEEEEE--CCcceEEeecCCccE
Q 004404 700 QRKITGFQFAPGSSSEVLVTSADS--RIRVVD--GIDLVHKFKGENYVQ 744 (755)
Q Consensus 700 ~~~Vtsl~fsPdg~~~L~sgs~Dg--~IrVWD--~~~ll~~~~GH~~~V 744 (755)
... .+++.. ++. ++++|+.|+ .+-.|| +.+.......|.+.-
T Consensus 503 r~~-~~~~~~-~~~-iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~~~ 548 (557)
T PHA02713 503 LSA-LHTILH-DNT-IMMLHCYESYMLQDTFNVYTYEWNHICHQHSNSY 548 (557)
T ss_pred ccc-ceeEEE-CCE-EEEEeeecceeehhhcCcccccccchhhhcCCce
Confidence 111 222222 344 788888888 677788 344444445566553
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.58 E-value=4.4 Score=41.72 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=55.4
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe-------c--------cCCCCEEEEEEccCCCEEEEEECCC
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-------N--------DLHEMVTAACYTPDGQGALVGSYKG 671 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~-------~--------~~~~~VtsvafSPdG~~LasGs~DG 671 (755)
..++..+.. .+.+|++.+.+|.+++||+.+++.+.. . .....|..+.++.+|.-|++-+ +|
T Consensus 12 gs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 12 GSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred CCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 445554443 678999999999999999999875421 1 2446789999999997776654 68
Q ss_pred cEEEEECCCCeeee
Q 004404 672 SCHLYNTSENKLQQ 685 (755)
Q Consensus 672 ~I~lwDl~~~~~~~ 685 (755)
..+.|+..-+.-+.
T Consensus 88 ~~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 88 DSYSYSPDLGCWIR 101 (219)
T ss_pred CEEEeccccceeEE
Confidence 89999987665443
No 414
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.54 E-value=14 Score=43.79 Aligned_cols=110 Identities=12% Similarity=0.157 Sum_probs=71.6
Q ss_pred CCEEEEEecCCcEEEEEeC-CCcEEEEECCCCcEEEEe--ecCCceEEEEEee-CCCcEEEEEECCCcEEEEECC-----
Q 004404 568 DDVLDLSWSKSQHLLSSSM-DKTVRLWHLSSKTCLKIF--SHSDYVTCIQFNP-VDDRYFISGSLDAKVRIWSIP----- 638 (755)
Q Consensus 568 ~~V~~L~~spd~~LaSgs~-DgtVrLWDl~t~~~~~~~--~h~~~VtsVafsP-~dg~~LaSgS~DgtVrIWDl~----- 638 (755)
..+.-+.-+.-++++.... ..++.|||...+...... ...+.|..+.|.. .+++.+++.+....|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 3344444444455555444 457999999988754443 3588999999874 167888888999999998542
Q ss_pred ----CCcEE---EeccCC-CCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 639 ----ERQVV---DWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 639 ----t~~~v---~~~~~~-~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
+...+ ....+. .+|.+.+|.++|..++ |+ .+.+.|+|-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GS-GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEE-Ee-CCEEEEECCC
Confidence 11122 222222 5789999999995544 43 4578888654
No 415
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.25 E-value=6.3 Score=44.62 Aligned_cols=135 Identities=16% Similarity=0.211 Sum_probs=83.4
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeC-------CCcEEEEEECCCcEEEEECCC-CcEEEeccCC---
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV-------DDRYFISGSLDAKVRIWSIPE-RQVVDWNDLH--- 649 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~-------dg~~LaSgS~DgtVrIWDl~t-~~~v~~~~~~--- 649 (755)
+..+..-..++-.|+..|+.+........| -|+|.|. +...|+ |-.+..|.-.|.+- +..+......
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhcc
Confidence 445666677888899999999998855555 6788881 123344 44455554445432 3222222222
Q ss_pred --CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEE
Q 004404 650 --EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (755)
Q Consensus 650 --~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrV 727 (755)
....+..-...| ++|+|+..|.|++||--.-.-... +.+-...|..+....+|+ ++++++. ..|.+
T Consensus 561 tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKta---------lP~lG~aIk~idvta~Gk-~ilaTCk-~yllL 628 (776)
T COG5167 561 TKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTA---------LPGLGDAIKHIDVTANGK-HILATCK-NYLLL 628 (776)
T ss_pred ccccccccccccCc-eEEEecCCCceeeehhhcchhhhc---------CcccccceeeeEeecCCc-EEEEeec-ceEEE
Confidence 233333333344 999999999999999654333222 225667899999999998 5555554 35666
Q ss_pred EE
Q 004404 728 VD 729 (755)
Q Consensus 728 WD 729 (755)
-|
T Consensus 629 ~d 630 (776)
T COG5167 629 TD 630 (776)
T ss_pred Ee
Confidence 66
No 416
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.15 E-value=15 Score=37.20 Aligned_cols=130 Identities=11% Similarity=0.027 Sum_probs=76.9
Q ss_pred CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE---EeccCC---CCEEEEEEcc
Q 004404 586 MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV---DWNDLH---EMVTAACYTP 659 (755)
Q Consensus 586 ~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v---~~~~~~---~~VtsvafSP 659 (755)
.+|....+|.++-+++..+...+.=+.++. |+..|+.+....+++.-|..+-... ...... ..++-+-|-
T Consensus 109 ~egvaf~~d~~t~~~lg~~~y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V- 184 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFSYEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV- 184 (262)
T ss_pred ccceeEEEChHHhhhhcccccCCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-
Confidence 367888999999999988887777777776 5556777666667777776553221 111111 122223332
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeeeccccccccc---cccCCCCCeEEEEEccCCCeEEEEE
Q 004404 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK---KKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 660 dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~---~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
+|...|=-=....|...+..+|+....+.+..... ....|....+++++.|++..++++|
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 34333333344455555666666655543322111 1235667889999999987556655
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.37 E-value=0.96 Score=53.97 Aligned_cols=165 Identities=13% Similarity=0.159 Sum_probs=90.7
Q ss_pred eccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECC--CCcEEEEe-----e-cCCceEEEEEeeC--CCcEEEEEECCC
Q 004404 563 FQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS--SKTCLKIF-----S-HSDYVTCIQFNPV--DDRYFISGSLDA 630 (755)
Q Consensus 563 l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~--t~~~~~~~-----~-h~~~VtsVafsP~--dg~~LaSgS~Dg 630 (755)
++|..+.|-+|.|-.. ..++ -.-|...|||+. .|+....+ . ...++.-|.|.|. +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4677788888888543 1222 223668899876 33322221 1 3445555666551 446677777788
Q ss_pred cEEEEECCCCcEEEeccCCCCEEE-----------EEEccCCCEEEEEECCCcEEEEECCC-CeeeeccccccccccccC
Q 004404 631 KVRIWSIPERQVVDWNDLHEMVTA-----------ACYTPDGQGALVGSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRS 698 (755)
Q Consensus 631 tVrIWDl~t~~~v~~~~~~~~Vts-----------vafSPdG~~LasGs~DG~I~lwDl~~-~~~~~~~~i~~~~~~~~~ 698 (755)
+|++..+......-+..|..+++. ..++|||+.++.++.||.+++|.+.- ++..... ...++.
T Consensus 206 ~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rc-----lhewkp 280 (1283)
T KOG1916|consen 206 EIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRC-----LHEWKP 280 (1283)
T ss_pred ceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhh-----hhccCC
Confidence 888877654322111223322222 23799999999999999999998752 2222211 122445
Q ss_pred CCC-CeEEEEEccC-------CCe-EEEEEEC-CCcEEEEE--CCcce
Q 004404 699 HQR-KITGFQFAPG-------SSS-EVLVTSA-DSRIRVVD--GIDLV 734 (755)
Q Consensus 699 h~~-~Vtsl~fsPd-------g~~-~L~sgs~-Dg~IrVWD--~~~ll 734 (755)
|.+ +-.|..|+.+ +.. +++++++ ...+++|. .++|+
T Consensus 281 hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 281 HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 663 2223334432 112 3444433 45689998 34444
No 418
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.34 E-value=3.4 Score=30.94 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=25.5
Q ss_pred CCEEEEEEcCCC---CEEEEEECCCcEEEEeCcC
Q 004404 457 GSIWSIKFSLDG---RYLASAGEDCVIHVWQVVE 487 (755)
Q Consensus 457 ~~I~sI~fSpdg---~~LaTgs~DGtVrVWdl~t 487 (755)
++|.+++|+|.. .+|+.+-.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999854 4777777779999999975
No 419
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=84.06 E-value=19 Score=42.58 Aligned_cols=147 Identities=12% Similarity=0.187 Sum_probs=84.4
Q ss_pred EEEEecCCcEEEEEeCC------CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCc-----EEEEEC
Q 004404 571 LDLSWSKSQHLLSSSMD------KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAK-----VRIWSI 637 (755)
Q Consensus 571 ~~L~~spd~~LaSgs~D------gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~Dgt-----VrIWDl 637 (755)
.+++...+..+++|+.| .++..||..+.+-...-. ....-.+++.. ++.+.++|+.||. |..||.
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecC
Confidence 34555566778899988 468888888776443222 11111222222 7888999998865 778888
Q ss_pred CCCcEEEeccCCCCEEEEEEc-cCCCEEEEEECCC------cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEcc
Q 004404 638 PERQVVDWNDLHEMVTAACYT-PDGQGALVGSYKG------SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (755)
Q Consensus 638 ~t~~~v~~~~~~~~VtsvafS-PdG~~LasGs~DG------~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsP 710 (755)
.+.+-...-.........+.. -+|+..++|+.++ ++..||..++.-....+... ...++ +++...
T Consensus 404 ~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~---~R~~~-----g~a~~~ 475 (571)
T KOG4441|consen 404 VTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT---RRSGF-----GVAVLN 475 (571)
T ss_pred CCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc---ccccc-----eEEEEC
Confidence 776543333232223332222 2577778887554 47889998887665443211 11122 233332
Q ss_pred CCCeEEEEEECCCc-----EEEEE
Q 004404 711 GSSSEVLVTSADSR-----IRVVD 729 (755)
Q Consensus 711 dg~~~L~sgs~Dg~-----IrVWD 729 (755)
+. ++++||.|+. |..||
T Consensus 476 -~~-iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 476 -GK-IYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred -CE-EEEECCccCCCccceEEEEc
Confidence 33 6777777662 66677
No 420
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.44 E-value=0.15 Score=56.76 Aligned_cols=143 Identities=10% Similarity=0.195 Sum_probs=99.6
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCc-EEEEEECCCcEEEEECCCCcEEEec-
Q 004404 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQVVDWN- 646 (755)
Q Consensus 570 V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~-~LaSgS~DgtVrIWDl~t~~~v~~~- 646 (755)
.....|-|. ..++.++.+..|..||- .++.......++....++|.. +++ .++.+-..+.+.+||+.+....++.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDk-egdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDK-EGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhcc-ccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 344567675 55888888899999984 455555555667777888887 555 4455667889999999765432221
Q ss_pred cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcE
Q 004404 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (755)
Q Consensus 647 ~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~I 725 (755)
+....-.-+.|++.+..++.|...|.+.||+..+.+.... ...|..+++.++|.+.+ +.+.++.|..+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv---------~Gkh~RRgtq~av~lEd--~vil~dcd~~L 182 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV---------MGKHQRRGTQIAVTLED--YVILCDCDNTL 182 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhh---------hcccccceeEEEecccc--eeeecCcHHHH
Confidence 1112222278999999999999999999999877655432 12399999999999987 46666655443
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.27 E-value=20 Score=43.42 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=50.9
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCC-----C-----ee---eeccccccccccccCCCCCeEEEEEccCC--Ce
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSE-----N-----KL---QQKSPINLQNKKKRSHQRKITGFQFAPGS--SS 714 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~-----~-----~~---~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg--~~ 714 (755)
-.|..|.++|+|++|+..+..|.+.+ .+.. + +. ...+.+.... ....+...|..+.|+|.+ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERF-FTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhh-ccCCCCceEEEEEEcCCCCCCC
Confidence 46889999999999999887665433 3321 1 11 0111111000 012345689999999975 34
Q ss_pred EEEEEECCCcEEEEEC
Q 004404 715 EVLVTSADSRIRVVDG 730 (755)
Q Consensus 715 ~L~sgs~Dg~IrVWD~ 730 (755)
.|++-..|++||+||.
T Consensus 163 ~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDI 178 (717)
T ss_pred eEEEEecCCEEEEEec
Confidence 8999999999999993
No 422
>PHA02713 hypothetical protein; Provisional
Probab=83.16 E-value=24 Score=41.67 Aligned_cols=105 Identities=10% Similarity=0.168 Sum_probs=58.7
Q ss_pred CCcEEEEEeCC------CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCC-----cEEEEECCCCcEE
Q 004404 577 KSQHLLSSSMD------KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPERQVV 643 (755)
Q Consensus 577 pd~~LaSgs~D------gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~Dg-----tVrIWDl~t~~~v 643 (755)
.+..++.|+.+ ..|..||..+..-...-. ....-.+++.. ++.+.+.|+.++ ++..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 34556666653 357788887764322111 11111222322 678888888764 4888998876544
Q ss_pred EeccCCCC---EEEEEEccCCCEEEEEECCC-----------------------cEEEEECCCCeeee
Q 004404 644 DWNDLHEM---VTAACYTPDGQGALVGSYKG-----------------------SCHLYNTSENKLQQ 685 (755)
Q Consensus 644 ~~~~~~~~---VtsvafSPdG~~LasGs~DG-----------------------~I~lwDl~~~~~~~ 685 (755)
.......+ ...++ -+|+..++|+.++ .+..||..+.+-..
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 33332221 11222 3677777777542 47788888876544
No 423
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=82.80 E-value=67 Score=34.46 Aligned_cols=142 Identities=11% Similarity=0.204 Sum_probs=78.5
Q ss_pred cEEEEECCCCcEEEEee-------cCCceEEEEEeeCCC----cE-EEEEECCCcEEEEECCCCcEEEeccCC-------
Q 004404 589 TVRLWHLSSKTCLKIFS-------HSDYVTCIQFNPVDD----RY-FISGSLDAKVRIWSIPERQVVDWNDLH------- 649 (755)
Q Consensus 589 tVrLWDl~t~~~~~~~~-------h~~~VtsVafsP~dg----~~-LaSgS~DgtVrIWDl~t~~~v~~~~~~------- 649 (755)
+|.+||+.+++.++++. ..+.++.+.+...++ .+ .++=+..+-|.|+|+.+++..++..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 68899999999988885 245788888876322 23 333344468999999998765443221
Q ss_pred -------------CCEEEEEEcc---CCCEEEEEECCCcEEEEECCCCeeeeccccccc----cccccCCC-CCeEEEEE
Q 004404 650 -------------EMVTAACYTP---DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ----NKKKRSHQ-RKITGFQF 708 (755)
Q Consensus 650 -------------~~VtsvafSP---dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~----~~~~~~h~-~~Vtsl~f 708 (755)
..+..++.+| +|+.|+-....+ -++|.+.+..+......... ..+..+.. ....++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 2355566655 455555544322 12333322111111000000 00011221 35567888
Q ss_pred ccCCCeEEEEEECCCcEEEEECCc
Q 004404 709 APGSSSEVLVTSADSRIRVVDGID 732 (755)
Q Consensus 709 sPdg~~~L~sgs~Dg~IrVWD~~~ 732 (755)
.++|. ++++--..+.|..|++..
T Consensus 194 D~~G~-ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 194 DPNGN-LYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp ETTTE-EEEEECCCTEEEEEETTT
T ss_pred CCCCc-EEEecCCCCeEEEEeCCC
Confidence 88885 677778889999999543
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.02 E-value=6.9 Score=40.26 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=49.2
Q ss_pred EccCCCEEEEEECCCcEEEEECCCCeeeecc-cccccccc----ccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKS-PINLQNKK----KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 657 fSPdG~~LasGs~DG~I~lwDl~~~~~~~~~-~i~~~~~~----~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+..++.+|++-+.+|.+++||+.+++..... .+...... -......|+.+.+..+|. -|++ -.+|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~-lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVT-LSNGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEE-EeCCCEEEec
Confidence 4456889999999999999999998876543 11110000 004567899999998886 3444 3457889998
No 425
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=81.89 E-value=1.4e+02 Score=36.95 Aligned_cols=144 Identities=13% Similarity=0.154 Sum_probs=83.6
Q ss_pred EEecCCcEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeC--CCc---EEEEEECCCcEEEEE-CCCCcEEE
Q 004404 573 LSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPV--DDR---YFISGSLDAKVRIWS-IPERQVVD 644 (755)
Q Consensus 573 L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~--dg~---~LaSgS~DgtVrIWD-l~t~~~v~ 644 (755)
.++...-.++.++.++.+...++..+....+.. ....|.|+.++|. +.+ +++.|.++..+.+.- ..+...+.
T Consensus 494 ~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~ 573 (1096)
T KOG1897|consen 494 VVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILIT 573 (1096)
T ss_pred EEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceee
Confidence 333333567777777778777877666333332 4678999999983 223 788998887766543 34444332
Q ss_pred ec--c---CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 645 WN--D---LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 645 ~~--~---~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
.. . .+..|.-.++--|..+|.++..||.+..|-+.....+..-. ++..--..++.=-.|...+.+.++++
T Consensus 574 ~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~-----Kk~~lGt~P~~Lr~f~sk~~t~vfa~ 648 (1096)
T KOG1897|consen 574 HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDR-----KKVTLGTQPISLRTFSSKSRTAVFAL 648 (1096)
T ss_pred eeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccc-----cccccCCCCcEEEEEeeCCceEEEEe
Confidence 22 2 22345555666678899999999998766554433332211 11111234455455666555455544
Q ss_pred EC
Q 004404 720 SA 721 (755)
Q Consensus 720 s~ 721 (755)
++
T Consensus 649 sd 650 (1096)
T KOG1897|consen 649 SD 650 (1096)
T ss_pred CC
Confidence 44
No 426
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=81.80 E-value=1.4e+02 Score=36.77 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=95.5
Q ss_pred cCCCCEEEEEec---CC----cEEEEEeCCCcEEEEE------CCC---------CcEEEEee----cCCceEEEEEeeC
Q 004404 565 GHLDDVLDLSWS---KS----QHLLSSSMDKTVRLWH------LSS---------KTCLKIFS----HSDYVTCIQFNPV 618 (755)
Q Consensus 565 gH~~~V~~L~~s---pd----~~LaSgs~DgtVrLWD------l~t---------~~~~~~~~----h~~~VtsVafsP~ 618 (755)
.-..+|..|+|. .. ..++..-....+.|+. +.. ..++..+. ...+...|+|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 455678888887 21 2344444555667766 111 13344443 3457889999998
Q ss_pred CCcEEEEEECCCcEEEEECCCCc-----EEEec-cC----------CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe
Q 004404 619 DDRYFISGSLDAKVRIWSIPERQ-----VVDWN-DL----------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (755)
Q Consensus 619 dg~~LaSgS~DgtVrIWDl~t~~-----~v~~~-~~----------~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~ 682 (755)
+...||.....|...||++.... ..... .. ......+.|.++-..|++.+ ...+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCC
Confidence 88899999999999999992111 11111 11 12344788988888888876 5678999999876
Q ss_pred eeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
....+. .......|.++.-+|..+.++++-.. ..|...|
T Consensus 236 ~~~~l~-------~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~ 274 (765)
T PF10214_consen 236 QTEYLV-------TAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLD 274 (765)
T ss_pred ccchhc-------cCCChhheeeEEecCCccceEEEEec-CeEEEEE
Confidence 543211 11344678888888874333332222 3455555
No 427
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.58 E-value=95 Score=34.71 Aligned_cols=183 Identities=14% Similarity=0.189 Sum_probs=101.7
Q ss_pred eeeecCCCceEEeccCCCCEEEEE------ecCCc-EEEEEe-CC---CcEEEEECC--CCcEEEEee--------cCCc
Q 004404 551 TVFALSDKPICSFQGHLDDVLDLS------WSKSQ-HLLSSS-MD---KTVRLWHLS--SKTCLKIFS--------HSDY 609 (755)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~L~------~spd~-~LaSgs-~D---gtVrLWDl~--t~~~~~~~~--------h~~~ 609 (755)
.++++.++.+..+.. +.++.+. +.-.. -|+.++ .+ .+|++|.+. ++. +..+. ....
T Consensus 81 ~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e 157 (381)
T PF02333_consen 81 YVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSE 157 (381)
T ss_dssp EEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSS
T ss_pred EEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCccccccccc
Confidence 567778888777742 2333322 22111 144443 32 479999775 333 33332 1234
Q ss_pred eEEEEEe--eCCCc-EEEEEECCCcEEEEECC---CC----cEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 610 VTCIQFN--PVDDR-YFISGSLDAKVRIWSIP---ER----QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 610 VtsVafs--P~dg~-~LaSgS~DgtVrIWDl~---t~----~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
++.+|+- |.++. +++....+|.+.-|.+. .+ ++++.+.....+..|+......+|++|-.+.-|.-|+.+
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccEEEEEecC
Confidence 6777774 32344 66677889988888764 33 346667777899999999988999999999999999987
Q ss_pred CCeeeeccccccccccccCCCCCeEEEEEc--cCCCeEEEEEE-CCCcEEEEE---CCcceEEee
Q 004404 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFA--PGSSSEVLVTS-ADSRIRVVD---GIDLVHKFK 738 (755)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs--Pdg~~~L~sgs-~Dg~IrVWD---~~~ll~~~~ 738 (755)
.........+.. ..-......|-+|+.. +++..+|++.+ .+++..||| ....+..|.
T Consensus 238 p~~~~~~~~v~~--~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 238 PEGGNDRTLVAS--ADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp CCC-S--EEEEE--BSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred CCCCCcceeeec--ccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence 332211111100 0011234567788774 34554566554 477899999 235555554
No 428
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=81.43 E-value=22 Score=43.54 Aligned_cols=111 Identities=12% Similarity=0.075 Sum_probs=75.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCce---------EEEEEee---------------CCCcEEEEEECCCcEE
Q 004404 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYV---------TCIQFNP---------------VDDRYFISGSLDAKVR 633 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~V---------tsVafsP---------------~dg~~LaSgS~DgtVr 633 (755)
++.|+.++.++.|.-.|..+|+.+..+.....+ ..+.+.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 478888888899999999999988887633221 1233321 1234788899999999
Q ss_pred EEECCCCcEEEeccCCCCEE-------------EEEEcc--CCCEEEEEEC----------CCcEEEEECCCCeeeeccc
Q 004404 634 IWSIPERQVVDWNDLHEMVT-------------AACYTP--DGQGALVGSY----------KGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 634 IWDl~t~~~v~~~~~~~~Vt-------------svafSP--dG~~LasGs~----------DG~I~lwDl~~~~~~~~~~ 688 (755)
-.|..+++.+..+.....|. .+.-.| .+..+++|+. +|.|+-||+.+|+++..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999999885444332221 112222 2346666643 6889999999999987654
No 429
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.83 E-value=1.1e+02 Score=38.93 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=52.2
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECC----CC----cE-----------------EEEe-ecCCceEEEEEeeCC
Q 004404 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS----SK----TC-----------------LKIF-SHSDYVTCIQFNPVD 619 (755)
Q Consensus 566 H~~~V~~L~~spd~~LaSgs~DgtVrLWDl~----t~----~~-----------------~~~~-~h~~~VtsVafsP~d 619 (755)
....|+|+....+|.++.++.|| .||.+. .+ +| +... .+.++|..|+... .
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-S 253 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-c
Confidence 34568899977789999999999 455431 11 11 1222 3677999999987 6
Q ss_pred CcEEEEEECCCcEEEEECCC
Q 004404 620 DRYFISGSLDAKVRIWSIPE 639 (755)
Q Consensus 620 g~~LaSgS~DgtVrIWDl~t 639 (755)
-..+++-+..++|.+|++..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 77899999999999999976
No 430
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.74 E-value=91 Score=35.17 Aligned_cols=146 Identities=10% Similarity=0.041 Sum_probs=82.7
Q ss_pred EEEEEecCCcEEEEEeCCCcEEE-EECCCCc-EEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE-----
Q 004404 570 VLDLSWSKSQHLLSSSMDKTVRL-WHLSSKT-CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV----- 642 (755)
Q Consensus 570 V~~L~~spd~~LaSgs~DgtVrL-WDl~t~~-~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~----- 642 (755)
...+..++++.++..+..|.+.. ||-.... ..........++.+.|.+ ++.+++++ ..|.+ +|....++.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l-~~S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGL-YVSKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceE-EEecCCCCcccccc
Confidence 45556677766666666665443 4422111 122233566789999998 77777655 56665 444444431
Q ss_pred EEecc---CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 643 VDWND---LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 643 v~~~~---~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
..... ....++++.|.+++..+++| ..|.+.... ..++.-.... ....-...++.+.|.+++ ...+.
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~------~~~~~~~~ly~v~f~~~~--~g~~~ 387 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDK------GADNIAANLYSVKFFDDK--KGFVL 387 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEcc------ccCCCCcceeEEEEcCCC--ceEEE
Confidence 11111 22358999999887766555 577666553 3343322110 001223567899988776 46777
Q ss_pred ECCCcEEEE
Q 004404 720 SADSRIRVV 728 (755)
Q Consensus 720 s~Dg~IrVW 728 (755)
+.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 888887655
No 431
>PHA03098 kelch-like protein; Provisional
Probab=80.42 E-value=36 Score=39.70 Aligned_cols=107 Identities=15% Similarity=0.237 Sum_probs=56.5
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCcEEEE--eecCCceEEEEEeeCCCcEEEEEECC------CcEEEEECCCCcEEE
Q 004404 578 SQHLLSSSMD-----KTVRLWHLSSKTCLKI--FSHSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVD 644 (755)
Q Consensus 578 d~~LaSgs~D-----gtVrLWDl~t~~~~~~--~~h~~~VtsVafsP~dg~~LaSgS~D------gtVrIWDl~t~~~v~ 644 (755)
+..++.|+.+ ..+..||..+.+-... +.+...-.+++.. ++.+++.|+.+ ..+..||..+.+-..
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 4556666654 3577888776543322 1122222222322 56777777632 458889988765443
Q ss_pred eccCCCCE-EEEEEccCCCEEEEEECC--------CcEEEEECCCCeeeec
Q 004404 645 WNDLHEMV-TAACYTPDGQGALVGSYK--------GSCHLYNTSENKLQQK 686 (755)
Q Consensus 645 ~~~~~~~V-tsvafSPdG~~LasGs~D--------G~I~lwDl~~~~~~~~ 686 (755)
........ ...+...+++.++.|+.+ ..+.+||..+++-...
T Consensus 421 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~ 471 (534)
T PHA03098 421 GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL 471 (534)
T ss_pred cCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeC
Confidence 22222111 111222356666666643 2388999988765543
No 432
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=80.00 E-value=6.3 Score=44.46 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=57.4
Q ss_pred EEEEccCCCEEEEEECCCcEEE---EECCC-C----eeeeccccccccccccCCCCCeEEEEEccC----------CCeE
Q 004404 654 AACYTPDGQGALVGSYKGSCHL---YNTSE-N----KLQQKSPINLQNKKKRSHQRKITGFQFAPG----------SSSE 715 (755)
Q Consensus 654 svafSPdG~~LasGs~DG~I~l---wDl~~-~----~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd----------g~~~ 715 (755)
.++.+|++..||.+..+..+.+ |+... + .........+ .......|+++.|-|- +...
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l----~~~~~e~ITsi~clpl~s~~~s~~~~dw~~ 81 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPL----DDEPGECITSILCLPLSSQKRSTGGPDWTC 81 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeec----cCCCCCEEEEEEEEEeecccccCCCCCcEE
Confidence 4688999999999987776655 64421 1 1111111111 0111267888887653 1347
Q ss_pred EEEEECCCcEEEEE-CCcceEEeecCCccEEEEEE
Q 004404 716 VLVTSADSRIRVVD-GIDLVHKFKGENYVQYMVCI 749 (755)
Q Consensus 716 L~sgs~Dg~IrVWD-~~~ll~~~~GH~~~V~sv~f 749 (755)
+++|..+|.|++|. .+.++..-.-|..+|..+..
T Consensus 82 I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~ 116 (415)
T PF14655_consen 82 IAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKC 116 (415)
T ss_pred EEEEecccEEEEEeccchHHHHHhcCccceEEEEe
Confidence 99999999999998 56666555556666655543
No 433
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=79.46 E-value=30 Score=36.27 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=65.7
Q ss_pred ceEEEEEeeCCCcEEEEEE---CCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEE-CCCCeee
Q 004404 609 YVTCIQFNPVDDRYFISGS---LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN-TSENKLQ 684 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS---~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwD-l~~~~~~ 684 (755)
.+...++++ ++..++... ....++++... ...........++.-.|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 888776655 23345555433 3222221334788889999987777766666777764 3333322
Q ss_pred eccccccccccccCCCCCeEEEEEccCCCeEEEEE--ECCCcEEEE
Q 004404 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT--SADSRIRVV 728 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg--s~Dg~IrVW 728 (755)
.. .+. ...-...|+.+.++|||....++. ..+++|.|-
T Consensus 102 ~~-~v~-----~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 102 PV-EVD-----WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVA 141 (253)
T ss_pred eE-Eec-----ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence 11 111 011112899999999998444443 234666665
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.52 E-value=67 Score=38.51 Aligned_cols=46 Identities=20% Similarity=0.436 Sum_probs=40.0
Q ss_pred eeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECC
Q 004404 551 TVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS 596 (755)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~ 596 (755)
.++..+++.+..+.-..+++..+.|+.+..|++...+|+|++|++-
T Consensus 67 ~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 67 RIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL 112 (829)
T ss_pred EEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc
Confidence 6778888888777666668999999999999999999999999975
No 435
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.71 E-value=1.4e+02 Score=33.88 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=41.8
Q ss_pred CCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC-----CCCEEEEEECCCcEEEEeC
Q 004404 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-----DGRYLASAGEDCVIHVWQV 485 (755)
Q Consensus 420 s~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp-----dg~~LaTgs~DGtVrVWdl 485 (755)
..+.++.|+..|.++||.....+......+.+. .-..+|..|..-. +...||. =.-..+.||.+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v 104 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSV 104 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEE
Confidence 457789999999999999976665433322222 2347899988642 2234444 34467888877
No 436
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=76.29 E-value=7.3 Score=29.23 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=26.8
Q ss_pred CceEEEEEeeCCC--cEEEEEECCCcEEEEECCC
Q 004404 608 DYVTCIQFNPVDD--RYFISGSLDAKVRIWSIPE 639 (755)
Q Consensus 608 ~~VtsVafsP~dg--~~LaSgS~DgtVrIWDl~t 639 (755)
+.|.++.|+|..+ ++|+..-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998445 6888888889999999985
No 437
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=75.05 E-value=47 Score=39.34 Aligned_cols=105 Identities=12% Similarity=0.214 Sum_probs=66.5
Q ss_pred cEEEEEeCC------CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECC------CcEEEEECCCCcEEE
Q 004404 579 QHLLSSSMD------KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVD 644 (755)
Q Consensus 579 ~~LaSgs~D------gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~D------gtVrIWDl~t~~~v~ 644 (755)
..++.|+.+ .+|..+|..+++-..... ....-.++++. ++.+.++|+.| .++..||..+.+-..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 456677766 468889988775443332 44455666666 46888899988 357888988877443
Q ss_pred eccCCCCEEEEEEcc-CCCEEEEEECCCc-----EEEEECCCCeeee
Q 004404 645 WNDLHEMVTAACYTP-DGQGALVGSYKGS-----CHLYNTSENKLQQ 685 (755)
Q Consensus 645 ~~~~~~~VtsvafSP-dG~~LasGs~DG~-----I~lwDl~~~~~~~ 685 (755)
.......-..+.... +|...|+|+.||. +-.||..+.+-..
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 333322222222222 5788888988865 7778887766544
No 438
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=74.67 E-value=38 Score=36.50 Aligned_cols=113 Identities=11% Similarity=0.136 Sum_probs=68.4
Q ss_pred eEEEEEeeCCCcEEEEEECCCcEEEEECC------CC-cEEEecc------CCCCEEEEEEccCCCE------------E
Q 004404 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIP------ER-QVVDWND------LHEMVTAACYTPDGQG------------A 664 (755)
Q Consensus 610 VtsVafsP~dg~~LaSgS~DgtVrIWDl~------t~-~~v~~~~------~~~~VtsvafSPdG~~------------L 664 (755)
-+.|+|+| .+.+-++....++..+||.. .. .++..+. .....+.+.|+....+ +
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 47899999 78888888888899999986 12 2222222 2246777877753333 5
Q ss_pred EEEECCCcEEEEECCCCee---eeccccccccccccCCCCC-eEEEEEccC--CCeEEEEEECCCcEEEEE
Q 004404 665 LVGSYKGSCHLYNTSENKL---QQKSPINLQNKKKRSHQRK-ITGFQFAPG--SSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 665 asGs~DG~I~lwDl~~~~~---~~~~~i~~~~~~~~~h~~~-Vtsl~fsPd--g~~~L~sgs~Dg~IrVWD 729 (755)
+.+++||+|.-|...-+.. ...+.+. .+.... -.++++... +..+.++--..++|.|||
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d------~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVD------ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEc------cCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 6678899999998543322 1111110 111233 345666543 453445557789999999
No 439
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=74.25 E-value=27 Score=41.98 Aligned_cols=106 Identities=8% Similarity=0.014 Sum_probs=71.2
Q ss_pred CCcEEEEEECCCcEEEEECCC-------C-------------cEEEeccCCCCEEEEEEc--cCCCEEEEEECCCcEEEE
Q 004404 619 DDRYFISGSLDAKVRIWSIPE-------R-------------QVVDWNDLHEMVTAACYT--PDGQGALVGSYKGSCHLY 676 (755)
Q Consensus 619 dg~~LaSgS~DgtVrIWDl~t-------~-------------~~v~~~~~~~~VtsvafS--PdG~~LasGs~DG~I~lw 676 (755)
+...|+.|..||.|.+|.+.+ . ++.-.......++.++++ ...++||+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 567889999999999997521 0 011223345688999998 778899999888888887
Q ss_pred ECCCCeeeeccccccccccccCCCCCeEEEEEccCC--C---eEEEEEECCCcEEEEEC
Q 004404 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS--S---SEVLVTSADSRIRVVDG 730 (755)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg--~---~~L~sgs~Dg~IrVWD~ 730 (755)
-+......... .+-..|...|-+|.|.++. + .+|++++-.|.+.+|+.
T Consensus 193 af~l~~~r~~~------~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYH------VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecccccccc------ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65543111100 0011356678999997754 2 26778899999988873
No 440
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=74.10 E-value=1.2e+02 Score=33.40 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=71.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecC---CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCC--CE
Q 004404 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHS---DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE--MV 652 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t~~~~~~~~h~---~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~--~V 652 (755)
++.++.+..+|.|.-.|..++..+...... ..+..-.+.. +++ |+.++.++.+..+|..+++++-...... .+
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 577888888998888888888866544322 2333333333 455 7778889999999998888875554444 12
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccc
Q 004404 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (755)
Q Consensus 653 tsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i 689 (755)
.....-.++ .++.++.++.++-.+..++........
T Consensus 146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEec
Confidence 222222233 444454789999999998888766443
No 441
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.97 E-value=34 Score=39.18 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=51.6
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEE---------CCCCeeeec---cccccccccccCCCCCeEEEEEccCC--CeEE
Q 004404 651 MVTAACYTPDGQGALVGSYKGSCHLYN---------TSENKLQQK---SPINLQNKKKRSHQRKITGFQFAPGS--SSEV 716 (755)
Q Consensus 651 ~VtsvafSPdG~~LasGs~DG~I~lwD---------l~~~~~~~~---~~i~~~~~~~~~h~~~Vtsl~fsPdg--~~~L 716 (755)
.|..+..++.|..++..+.+|.+.++= +++++.... +.+.-+... ....-.+..++|+|+. +..|
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft-ss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT-SSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec-cCCceeeeeccccCCccCCceE
Confidence 477888999999999988899876653 223322211 111100001 1223356778999987 6689
Q ss_pred EEEECCCcEEEEEC
Q 004404 717 LVTSADSRIRVVDG 730 (755)
Q Consensus 717 ~sgs~Dg~IrVWD~ 730 (755)
+.-+.|..|||||.
T Consensus 184 ~iL~sdnviRiy~l 197 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSL 197 (741)
T ss_pred EEEecCcEEEEEec
Confidence 99999999999994
No 442
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=73.87 E-value=1.3e+02 Score=32.27 Aligned_cols=136 Identities=13% Similarity=0.160 Sum_probs=82.6
Q ss_pred EEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE---EEeccCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 004404 600 CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV---VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (755)
Q Consensus 600 ~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~---v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lw 676 (755)
.+..+...+-+..+.++ +++...+..+.-++|+|+.+... +......+.-..+.. .|+++.++..+.-+-++
T Consensus 79 l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLiv 153 (370)
T COG5276 79 LLSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIV 153 (370)
T ss_pred eEEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEE
Confidence 33344456667778885 47888888889999999987542 333334344444444 48999999977778888
Q ss_pred ECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC-CcceEEeecCCc---cEEEEEE
Q 004404 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG-IDLVHKFKGENY---VQYMVCI 749 (755)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~-~~ll~~~~GH~~---~V~sv~f 749 (755)
|+.+.......- ........-..++.+- + +-..+..|+-+.|.|. ..---+|.+|.+ .++++..
T Consensus 154 dvsdpssP~lag------rya~~~~d~~~v~ISG--n-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~v 221 (370)
T COG5276 154 DVSDPSSPQLAG------RYALPGGDTHDVAISG--N-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSV 221 (370)
T ss_pred ECCCCCCceeee------eeccCCCCceeEEEec--C-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEe
Confidence 988755332110 1112222234555554 3 6777788999999993 222334555544 3555544
No 443
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=71.65 E-value=92 Score=33.36 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=58.9
Q ss_pred CcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEE------CCCcEEEEECCCCcEEEecc-----CCCCEEEE
Q 004404 588 KTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS------LDAKVRIWSIPERQVVDWND-----LHEMVTAA 655 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS------~DgtVrIWDl~t~~~v~~~~-----~~~~Vtsv 655 (755)
..|++||....+-...-. -.+.|+.|.|.. +.++++.|. ....+..||..+........ ..++|+.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 358999988765544433 678899999985 667777764 35568899998876544433 34688888
Q ss_pred EEcc-CC-CEEEEEE-CCCc--EEEEECC
Q 004404 656 CYTP-DG-QGALVGS-YKGS--CHLYNTS 679 (755)
Q Consensus 656 afSP-dG-~~LasGs-~DG~--I~lwDl~ 679 (755)
.+.. |+ ++.+.|. .+|. |..||-.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCC
Confidence 7754 34 3444444 3444 5555443
No 444
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=71.39 E-value=46 Score=36.38 Aligned_cols=108 Identities=14% Similarity=0.201 Sum_probs=55.3
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE---EEec-----cCCCCEEEEEEccC---CCEEEEEEC-C------
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV---VDWN-----DLHEMVTAACYTPD---GQGALVGSY-K------ 670 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~---v~~~-----~~~~~VtsvafSPd---G~~LasGs~-D------ 670 (755)
..+.|+|.| ++++|++ ...|.|++++ .++.. +... ........++++|+ ..+|++... .
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 457899999 8877664 6699999999 44433 2211 22357899999994 234444332 1
Q ss_pred --CcEEEEECCCC--eeeeccccccccccc-cCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 671 --GSCHLYNTSEN--KLQQKSPINLQNKKK-RSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 671 --G~I~lwDl~~~--~~~~~~~i~~~~~~~-~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
..|.-|....+ .......+ +..... ......-..|.|.|+|. ++++.+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l-~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~ 133 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVL-VTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD 133 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEE-EEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred cceeeEEEeccCCccccccceEE-EEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence 23444555444 11111100 000011 12233456699999996 4444433
No 445
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=70.25 E-value=78 Score=36.30 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=38.1
Q ss_pred cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE------ec--cCCCCEEEEEEccCC
Q 004404 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD------WN--DLHEMVTAACYTPDG 661 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~------~~--~~~~~VtsvafSPdG 661 (755)
.-...+.|+|.| ++++|++--..|+|++++..++.... .. .....+..|+++|+-
T Consensus 28 GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345668899999 88877766557999999865543211 11 135678999999874
No 446
>PRK10115 protease 2; Provisional
Probab=70.13 E-value=1.5e+02 Score=35.92 Aligned_cols=71 Identities=7% Similarity=-0.040 Sum_probs=47.0
Q ss_pred ceEEEEEeeCCCcEEEEEECC-----CcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECC------CcEEEEE
Q 004404 609 YVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK------GSCHLYN 677 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~D-----gtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~D------G~I~lwD 677 (755)
.+..+.++| ++++|+.+... -.|++.|+.++..+... ....-..++|.+|++.|+....+ ..|++++
T Consensus 128 ~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 366778899 88877765332 34889999888643111 11111569999999877665442 3578888
Q ss_pred CCCC
Q 004404 678 TSEN 681 (755)
Q Consensus 678 l~~~ 681 (755)
+.++
T Consensus 206 lgt~ 209 (686)
T PRK10115 206 IGTP 209 (686)
T ss_pred CCCC
Confidence 8877
No 447
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=68.47 E-value=2.1e+02 Score=32.40 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=32.4
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecc
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~ 687 (755)
-.+.+++.+|++++.|+...=|+|.|+|+..+..+..+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 35788999999999999888899999999998776543
No 448
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.61 E-value=74 Score=36.03 Aligned_cols=120 Identities=14% Similarity=0.126 Sum_probs=67.6
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
.+++|.+|+||+|.+.||.--.|++|.+.+..-.+...++...... ....+....|+....+......+-.+.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~-k~~~IlGF~W~~s~e~A~i~~~G~e~y------ 137 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT-KNANILGFCWTSSTEIAFITDQGIEFY------ 137 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc-CcceeEEEEEecCeeEEEEecCCeEEE------
Confidence 5679999999999999999999999999998554443333222111 122344555554422222211111110
Q ss_pred cccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cE--EEEEeCCCcEEEEECCCC
Q 004404 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH--LLSSSMDKTVRLWHLSSK 598 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~--LaSgs~DgtVrLWDl~t~ 598 (755)
......+.++..+.|...|....|.++ .. |+++-..+++.=+.++++
T Consensus 138 -----------------~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 138 -----------------QVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred -----------------EEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 001122345556778888999999887 32 233324455444444444
No 449
>PHA03098 kelch-like protein; Provisional
Probab=67.57 E-value=75 Score=37.02 Aligned_cols=105 Identities=13% Similarity=0.163 Sum_probs=56.6
Q ss_pred CcEEEEEeCCC------cEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECC-----CcEEEEECCCCcEEE
Q 004404 578 SQHLLSSSMDK------TVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQVVD 644 (755)
Q Consensus 578 d~~LaSgs~Dg------tVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~D-----gtVrIWDl~t~~~v~ 644 (755)
+..++.|+.++ .+..||..+.+....-. ....-.+++.. ++.+++.|+.+ ..+..||..+.+-..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 45566666542 57788887765533221 11111222222 67778888765 347788887765443
Q ss_pred eccCCCCE--EEEEEccCCCEEEEEECC------CcEEEEECCCCeeee
Q 004404 645 WNDLHEMV--TAACYTPDGQGALVGSYK------GSCHLYNTSENKLQQ 685 (755)
Q Consensus 645 ~~~~~~~V--tsvafSPdG~~LasGs~D------G~I~lwDl~~~~~~~ 685 (755)
......+. .+++ .-+++..+.|+.. ..+..||+.+.+-..
T Consensus 373 ~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 373 EPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 32222111 1122 2356677777632 458899998776544
No 450
>PHA02790 Kelch-like protein; Provisional
Probab=67.21 E-value=1.8e+02 Score=33.67 Aligned_cols=102 Identities=11% Similarity=0.079 Sum_probs=53.6
Q ss_pred cEEEEEeCC--CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCC---cEEEEECCCCcEEEeccCCCC
Q 004404 579 QHLLSSSMD--KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA---KVRIWSIPERQVVDWNDLHEM 651 (755)
Q Consensus 579 ~~LaSgs~D--gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~Dg---tVrIWDl~t~~~v~~~~~~~~ 651 (755)
..++.|+.+ .++..||..+++-...-. ....-.+++.. ++++.+.|+.++ .+..||..+.+-........+
T Consensus 320 ~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 320 KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 445566643 457888876554332222 11111222222 678888877654 477888877654432222211
Q ss_pred E-EEEEEccCCCEEEEEECCCcEEEEECCCCeeee
Q 004404 652 V-TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (755)
Q Consensus 652 V-tsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~ 685 (755)
. ...+..-+|+..+.| |.+.+||..+++-..
T Consensus 398 r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~ 429 (480)
T PHA02790 398 HYKSCALVFGRRLFLVG---RNAEFYCESSNTWTL 429 (480)
T ss_pred cccceEEEECCEEEEEC---CceEEecCCCCcEeE
Confidence 1 111223356666666 457889988776554
No 451
>PRK13684 Ycf48-like protein; Provisional
Probab=66.13 E-value=2.1e+02 Score=31.35 Aligned_cols=107 Identities=7% Similarity=0.065 Sum_probs=61.5
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-----cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE
Q 004404 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (755)
Q Consensus 568 ~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-----h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~ 642 (755)
..++++.+.+++.++..+..|.+++=..+.+..-.... ....+..+.+.| ++..++ ++.+|.|. .....++.
T Consensus 215 ~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~-~S~d~G~t 291 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLL-VSKDGGKT 291 (334)
T ss_pred ccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEE-EeCCCCCC
Confidence 35777888887666666677776543334443322221 123578899998 666555 55577654 34443332
Q ss_pred EEe----ccCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 004404 643 VDW----NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (755)
Q Consensus 643 v~~----~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl 678 (755)
-.. .......+.+.|..+++.+++| ..|.|-.|+-
T Consensus 292 W~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 292 WEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred CeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence 111 1223467888888777666655 5787776653
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.76 E-value=57 Score=36.89 Aligned_cols=138 Identities=11% Similarity=0.129 Sum_probs=84.4
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCC--cEEEEe--ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE---
Q 004404 572 DLSWSKSQHLLSSSMDKTVRLWHLSSK--TCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--- 644 (755)
Q Consensus 572 ~L~~spd~~LaSgs~DgtVrLWDl~t~--~~~~~~--~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~--- 644 (755)
.+-|...++++.+...|.+.=|-+... ...-.+ ...++|.+|.|++ |.+.|+.--.+.+|.+++....+...
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHH
Confidence 344443355555555566666655432 222223 2667999999999 99999999999999999984433221
Q ss_pred -ec-cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 645 -WN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 645 -~~-~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
.. .....|...+|+.+ .-+|.-.. ..+-+|-....+.... ..+.|.-.|.-..|.++-.-.|++++
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~-~G~e~y~v~pekrslR--------lVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITD-QGIEFYQVLPEKRSLR--------LVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEec-CCeEEEEEchhhhhhh--------hhhhcccCccEEEEccccceEeeecc
Confidence 11 12245888999876 44555443 3356665543322211 12467788999999998774444444
No 453
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=65.73 E-value=3.4e+02 Score=33.68 Aligned_cols=152 Identities=10% Similarity=0.086 Sum_probs=81.9
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCc-------EEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC--------
Q 004404 576 SKSQHLLSSSMDKTVRLWHLSSKT-------CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-------- 640 (755)
Q Consensus 576 spd~~LaSgs~DgtVrLWDl~t~~-------~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~-------- 640 (755)
.++..++..+.+|.|+-..+..-. ....+...+.+..+.... ....++..+..|.+..+.+..-
T Consensus 600 ~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~-~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~ 678 (800)
T TIGR01063 600 DDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTS-GDDEVMLGSKNGKAVRFPEEDVRPMGRAAR 678 (800)
T ss_pred CCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeC-CCCEEEEEECCCcEEEEEhhhcCCcCCCCC
Confidence 344689999999999988765321 111223345555544444 4456777777888776654321
Q ss_pred -cEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 641 -QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 641 -~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
.........+.|.++..-.+...++..+..|.++...+..-.....-..-....++......+..+....+.. .++..
T Consensus 679 Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~-~v~li 757 (800)
T TIGR01063 679 GVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDD-ELMLI 757 (800)
T ss_pred CeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCCC-eEEEE
Confidence 1111112234455555545556788888899888887654322211000000011222234454544444433 56777
Q ss_pred ECCCcEEEEE
Q 004404 720 SADSRIRVVD 729 (755)
Q Consensus 720 s~Dg~IrVWD 729 (755)
+.+|.+..++
T Consensus 758 T~~G~~lrf~ 767 (800)
T TIGR01063 758 TSAGKLIRTS 767 (800)
T ss_pred ecCCeEEEee
Confidence 7788776666
No 454
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=65.49 E-value=56 Score=34.21 Aligned_cols=149 Identities=14% Similarity=0.124 Sum_probs=74.7
Q ss_pred EEEECCCCcEEEEe-ecCCceEEEEEeeCCCcEEEEEEC-C--CcEEEEECCC----CcEEE---eccCCCCEEEEEEcc
Q 004404 591 RLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL-D--AKVRIWSIPE----RQVVD---WNDLHEMVTAACYTP 659 (755)
Q Consensus 591 rLWDl~t~~~~~~~-~h~~~VtsVafsP~dg~~LaSgS~-D--gtVrIWDl~t----~~~v~---~~~~~~~VtsvafSP 659 (755)
.+||+.+++..... .......+-.|.| ||++|.+|+. + ..+++++..+ ..... .....-+--++..-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 47888776543222 1333444456778 8999998875 2 3588888644 11111 122233555667778
Q ss_pred CCCEEEEEECCCc-EEEEECCCC-eeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECCcceEEe
Q 004404 660 DGQGALVGSYKGS-CHLYNTSEN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737 (755)
Q Consensus 660 dG~~LasGs~DG~-I~lwDl~~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~~ll~~~ 737 (755)
||+.|++|+...- ..+|.-... .....+.+... ........----+...|+|+ +++.+..+..|.=|...+.+..|
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~-~~~~~~~nlYP~~~llPdG~-lFi~an~~s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQ-TSDTLPNNLYPFVHLLPDGN-LFIFANRGSIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchh-hhccCccccCceEEEcCCCC-EEEEEcCCcEEEeCCCCeEEeeC
Confidence 9999999887643 344443221 11111100000 00001111112344578997 66666655433333345555665
Q ss_pred ecCCc
Q 004404 738 KGENY 742 (755)
Q Consensus 738 ~GH~~ 742 (755)
..-.+
T Consensus 206 P~lPg 210 (243)
T PF07250_consen 206 PDLPG 210 (243)
T ss_pred CCCCC
Confidence 54333
No 455
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.17 E-value=3.3e+02 Score=33.00 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=37.8
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc--CCCCEEEEEEccC
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND--LHEMVTAACYTPD 660 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~--~~~~VtsvafSPd 660 (755)
...+..+..+| +.++|+-=...|.|.+-++...+....+. .+.+.-.++|.-+
T Consensus 216 ~~~~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 216 NSSVVKISVSP-NRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred CceEEEEEEcC-CcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 46778889999 88999999999999999887766553333 3334445666543
No 456
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=64.14 E-value=2.2e+02 Score=30.92 Aligned_cols=156 Identities=14% Similarity=0.161 Sum_probs=88.4
Q ss_pred cEEEEEeCCCcEEEEECCCCcE-----EEEee--cCCce-EEEEEeeC-CCcEEEE-EECCCcEEEEECCCCcEEE---e
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTC-----LKIFS--HSDYV-TCIQFNPV-DDRYFIS-GSLDAKVRIWSIPERQVVD---W 645 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~-----~~~~~--h~~~V-tsVafsP~-dg~~LaS-gS~DgtVrIWDl~t~~~v~---~ 645 (755)
..++.+++||+|.-|...-+.. ...+. ....| ..+++... .+++|+. =-..++|.+||-.=.++.. +
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 4578999999999998543222 22232 22333 35555531 2344444 4557899999854332210 0
Q ss_pred c----------------cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEc
Q 004404 646 N----------------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (755)
Q Consensus 646 ~----------------~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (755)
. ...-.|+-..-.++.+.=+.|..-|.|-+||+... +++.+. -.+.-..-++|+..
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~a-------s~g~LNaPWG~a~A 252 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVA-------SSGRLNAPWGLAIA 252 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEec-------cCCcccCCceeeeC
Confidence 0 11112333333444444445556688999998754 444322 12455666778776
Q ss_pred cC------CCeEEEEEECCCcEEEEE--CCcceEEeecCCcc
Q 004404 710 PG------SSSEVLVTSADSRIRVVD--GIDLVHKFKGENYV 743 (755)
Q Consensus 710 Pd------g~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~ 743 (755)
|- +. +|+---.||+|..|| +++.+..++.-...
T Consensus 253 Pa~FG~~sg~-lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~ 293 (336)
T TIGR03118 253 PESFGSLSGA-LLVGNFGDGTINAYDPQSGAQLGQLLDPDNH 293 (336)
T ss_pred hhhhCCCCCC-eEEeecCCceeEEecCCCCceeeeecCCCCC
Confidence 53 33 444446799999999 57877777765544
No 457
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=63.72 E-value=62 Score=39.02 Aligned_cols=100 Identities=9% Similarity=0.104 Sum_probs=71.1
Q ss_pred CcEEEEEeCCCcEEEEECCC-------C-------------cEEEEeecCCceEEEEEe--eCCCcEEEEEECCCcEEEE
Q 004404 578 SQHLLSSSMDKTVRLWHLSS-------K-------------TCLKIFSHSDYVTCIQFN--PVDDRYFISGSLDAKVRIW 635 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t-------~-------------~~~~~~~h~~~VtsVafs--P~dg~~LaSgS~DgtVrIW 635 (755)
...|+.|..||.|.+|.+.+ . ++...+.....+++++++ . ..++||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEEEecCCceEEEE
Confidence 36799999999999997531 0 122233456789999998 6 67888888888888888
Q ss_pred ECCC--CcEE--EeccCCCCEEEEEEccCC---C---EEEEEECCCcEEEEEC
Q 004404 636 SIPE--RQVV--DWNDLHEMVTAACYTPDG---Q---GALVGSYKGSCHLYNT 678 (755)
Q Consensus 636 Dl~t--~~~v--~~~~~~~~VtsvafSPdG---~---~LasGs~DG~I~lwDl 678 (755)
-... .+.. ....+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6543 1211 122355678899997743 2 7788999999999888
No 458
>PRK10115 protease 2; Provisional
Probab=63.13 E-value=3.5e+02 Score=32.91 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=20.1
Q ss_pred CEEEEEEcCCCCEEEEEECC-----CcEEEEeCcCC
Q 004404 458 SIWSIKFSLDGRYLASAGED-----CVIHVWQVVES 488 (755)
Q Consensus 458 ~I~sI~fSpdg~~LaTgs~D-----GtVrVWdl~t~ 488 (755)
.+..+.|+|||++|+-+-.. -.|++-|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg 163 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG 163 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC
Confidence 46778899999988876332 23555555443
No 459
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=62.89 E-value=97 Score=33.77 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=67.7
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCc------EEEEECCC--C---cE-----EEeccCCC--------CEEEEEEccCCC
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAK------VRIWSIPE--R---QV-----VDWNDLHE--------MVTAACYTPDGQ 662 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~Dgt------VrIWDl~t--~---~~-----v~~~~~~~--------~VtsvafSPdG~ 662 (755)
-+.+..|.+.| ++..+++.+.+|. +..+++.. + .+ ..+....+ -.-+|++.++|.
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35678888887 6667777888887 66665543 1 11 11111111 334788877887
Q ss_pred EEEEEECC------CcEEEEECCCCeeeeccccccccc------cccCCCCCeEEEEEccCCCeEEEEE
Q 004404 663 GALVGSYK------GSCHLYNTSENKLQQKSPINLQNK------KKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 663 ~LasGs~D------G~I~lwDl~~~~~~~~~~i~~~~~------~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
++++.-.+ ..|+.++.. +.....+.++.... .........-+|+++|+|. .|+++
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~ 164 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAA 164 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEE
Confidence 77776556 678888877 66655543322110 1223556789999999998 45544
No 460
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=62.52 E-value=30 Score=40.59 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=28.9
Q ss_pred CCEEEEEEcC----CCCEEEEEECCCcEEEEeCcCCceeeee
Q 004404 457 GSIWSIKFSL----DGRYLASAGEDCVIHVWQVVESERKGEL 494 (755)
Q Consensus 457 ~~I~sI~fSp----dg~~LaTgs~DGtVrVWdl~t~~~~~~l 494 (755)
+.+..++++. +..+|++.+.|+++|+||+.+++.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4566677766 6789999999999999999999886554
No 461
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=61.96 E-value=41 Score=34.39 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=36.5
Q ss_pred cEEEEEECCCcEEEEECCC--CcEEEeccCCCCEEEEEEccCCCEEEEE
Q 004404 621 RYFISGSLDAKVRIWSIPE--RQVVDWNDLHEMVTAACYTPDGQGALVG 667 (755)
Q Consensus 621 ~~LaSgS~DgtVrIWDl~t--~~~v~~~~~~~~VtsvafSPdG~~LasG 667 (755)
+.|+.+...++|.+|++.+ .++...+..-+.|..+.++..|+||++-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEE
Confidence 4444446678899999983 4455666666899999999999999994
No 462
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=61.77 E-value=41 Score=33.06 Aligned_cols=28 Identities=11% Similarity=0.343 Sum_probs=24.1
Q ss_pred CeEEEEEccCC-----CeEEEEEECCCcEEEEE
Q 004404 702 KITGFQFAPGS-----SSEVLVTSADSRIRVVD 729 (755)
Q Consensus 702 ~Vtsl~fsPdg-----~~~L~sgs~Dg~IrVWD 729 (755)
.|.+++|+|.| ..+|++.+.++.|.||.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 78999999953 45788889999999998
No 463
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=61.29 E-value=2e+02 Score=33.24 Aligned_cols=111 Identities=15% Similarity=0.070 Sum_probs=59.8
Q ss_pred EEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCc----eEEEEEeeCCCcEEEEEEC-------------CCcEEEE
Q 004404 573 LSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY----VTCIQFNPVDDRYFISGSL-------------DAKVRIW 635 (755)
Q Consensus 573 L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~----VtsVafsP~dg~~LaSgS~-------------DgtVrIW 635 (755)
+...+++.|+.+.. ..++.+|+. |+.+..+..... =..+...| +|++|+.+.. ...|..+
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 55667877777666 788888875 666666653332 24666778 8888887772 1235556
Q ss_pred ECCCCcEEEec---cCC-------------------------CCEEEEEEccCCCEEEEEEC-CCcEEEEECCCCeeeec
Q 004404 636 SIPERQVVDWN---DLH-------------------------EMVTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQQK 686 (755)
Q Consensus 636 Dl~t~~~v~~~---~~~-------------------------~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~~~~~~~ 686 (755)
| .+++++... .+- --++++.+.+....|++.+. -..|...|..++++...
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 6 666655321 100 14899999994445555444 55888899888887754
Q ss_pred c
Q 004404 687 S 687 (755)
Q Consensus 687 ~ 687 (755)
+
T Consensus 309 l 309 (477)
T PF05935_consen 309 L 309 (477)
T ss_dssp E
T ss_pred e
Confidence 4
No 464
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=60.80 E-value=2.5e+02 Score=30.45 Aligned_cols=150 Identities=15% Similarity=0.215 Sum_probs=76.4
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcE-EEEECCCC-cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE
Q 004404 566 HLDDVLDLSWSKSQHLLSSSMDKTV-RLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (755)
Q Consensus 566 H~~~V~~L~~spd~~LaSgs~DgtV-rLWDl~t~-~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v 643 (755)
-.+.+..+.-++++.++..+..|.+ .-||-... -..+.......|..|.|.| ++.+.+. ...|.|+.=+... ...
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~-~~Gg~~~~s~~~~-~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWML-ARGGQIQFSDDPD-DGE 219 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEE-ETTTEEEEEE-TT-EEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEE-eCCcEEEEccCCC-Ccc
Confidence 3466888888888666655566655 46775432 2223333678999999999 7666554 4888888877221 111
Q ss_pred Eecc-------CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEE
Q 004404 644 DWND-------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (755)
Q Consensus 644 ~~~~-------~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L 716 (755)
.+.. ....+..++|.+++...++|+ .|.+ +.....|+-=..... ...-...++.|.|.+.. .-
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~------~~~~~~n~~~i~f~~~~--~g 289 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRV------GENVPSNLYRIVFVNPD--KG 289 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GG------GTTSSS---EEEEEETT--EE
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECcc------ccCCCCceEEEEEcCCC--ce
Confidence 2211 123489999999877666655 5544 445555554332110 11234567888887664 45
Q ss_pred EEEECCCcEEEE
Q 004404 717 LVTSADSRIRVV 728 (755)
Q Consensus 717 ~sgs~Dg~IrVW 728 (755)
++-+.+|.|--|
T Consensus 290 f~lG~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLGQDGVLLRY 301 (302)
T ss_dssp EEE-STTEEEEE
T ss_pred EEECCCcEEEEe
Confidence 666778876544
No 465
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=60.70 E-value=3.1e+02 Score=31.54 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=26.3
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCC
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~ 488 (755)
.-..-+.|+|.|||++|+|--..|.|++++..+.
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 4456789999999988887655699999875443
No 466
>PRK13684 Ycf48-like protein; Provisional
Probab=60.68 E-value=2.6e+02 Score=30.60 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=87.9
Q ss_pred CCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE
Q 004404 567 LDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (755)
Q Consensus 567 ~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~ 644 (755)
...+.++.+.|++.++..+..|.+..-.-..++.-.... ....++++.+.| ++..++.+ ..|.+++=....+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence 346888999998777777777766542112222222222 456789999998 77766655 46766533333333211
Q ss_pred ecc-----CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 645 WND-----LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 645 ~~~-----~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
... ....+.++.+.|++..+++| .+|.+.. ....++.-..... ...-....+.+.|..++. .+..
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~------~~~~~~~~~~~~~~~~~~--~~~~ 319 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPV------GEEVPSNFYKIVFLDPEK--GFVL 319 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCc------CCCCCcceEEEEEeCCCc--eEEE
Confidence 111 12357889999988765555 5676553 3444433221110 011224577888876654 5667
Q ss_pred ECCCcEEEEEC
Q 004404 720 SADSRIRVVDG 730 (755)
Q Consensus 720 s~Dg~IrVWD~ 730 (755)
+..|.|-.|+.
T Consensus 320 G~~G~il~~~~ 330 (334)
T PRK13684 320 GQRGVLLRYVG 330 (334)
T ss_pred CCCceEEEecC
Confidence 88888888874
No 467
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=58.50 E-value=38 Score=33.25 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=26.5
Q ss_pred CCEEEEEEccCC------CEEEEEECCCcEEEEECCCC
Q 004404 650 EMVTAACYTPDG------QGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 650 ~~VtsvafSPdG------~~LasGs~DG~I~lwDl~~~ 681 (755)
..+.+++|||-| -+|++-+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 379999999955 46888899999999987754
No 468
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=57.29 E-value=1.3e+02 Score=36.53 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=55.9
Q ss_pred eEEEEEeeCCCcEEEEEECCC-----cEEEEECCC---CcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 004404 610 VTCIQFNPVDDRYFISGSLDA-----KVRIWSIPE---RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 610 VtsVafsP~dg~~LaSgS~Dg-----tVrIWDl~t---~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~ 681 (755)
-..+.|-| .|..+++-..|| .|+++..+. |..-.-......+..++|.-....++++ ..+.+.+|-..+-
T Consensus 249 e~~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNy 326 (1243)
T COG5290 249 EHQLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNY 326 (1243)
T ss_pred hhcccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccce
Confidence 34578999 888888876554 366665332 3322222334566777887666555554 3568999987765
Q ss_pred eeeeccccccccccccCCCCCeEEEEEccCCCeEEE
Q 004404 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (755)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~ 717 (755)
........ .-..+.-+.|+|.....|+
T Consensus 327 hWYLK~e~---------~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 327 HWYLKVER---------QIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred EEEEEEee---------cCCCcceeeeccccCcEEE
Confidence 54332221 1233555667775543333
No 469
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=57.02 E-value=18 Score=42.71 Aligned_cols=70 Identities=13% Similarity=0.256 Sum_probs=49.0
Q ss_pred ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEE
Q 004404 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677 (755)
Q Consensus 605 ~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwD 677 (755)
.....+++|+-+| .+.-|+.++.||.|++|+..............+...+.|...| |++.+.|..+.-|.
T Consensus 12 k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 3456788999999 9999999999999999998665544334444455556666544 55555566665564
No 470
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=56.60 E-value=1.9e+02 Score=32.62 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 701 RKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 701 ~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
..|..+...+... .|++...++.|++|+.
T Consensus 190 ~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l 218 (422)
T PF08801_consen 190 PKIVQVAVDPSRR-LLYTLTSDGSIQVWDL 218 (422)
T ss_dssp --EEEEEEETTTT-EEEEEESSE-EEEEEE
T ss_pred hceeeEEecCCcC-EEEEEeCCCcEEEEEE
Confidence 3488888888775 8999999999999993
No 471
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.43 E-value=3.3e+02 Score=34.61 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=47.3
Q ss_pred ccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE
Q 004404 564 QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (755)
Q Consensus 564 ~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v 643 (755)
.-|..++.+..+.....++.+..-+.+-+|+.........+. +....+++ ++..++++..||.+..||...++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~v~~h~Dgs~~fWd~s~g~~~ 269 (993)
T KOG1983|consen 195 SLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYL----PNGQLESR-DGSHFVSYHTDGSYAFWDVSSGKLQ 269 (993)
T ss_pred cccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcc----cccccCcc-CCceEEEEEecCCEEeeecCCCcee
Confidence 334455555555544445556666777777655443333332 11111166 8999999999999999999987663
No 472
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=54.33 E-value=3.1e+02 Score=29.61 Aligned_cols=131 Identities=11% Similarity=0.111 Sum_probs=84.4
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc---E
Q 004404 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ---V 642 (755)
Q Consensus 569 ~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~---~ 642 (755)
-+.++.++. ++...+..+.-++|.|+.+......+. ..+.-.++.. .|++...+..|.-+.+.|+.+.+ +
T Consensus 88 l~~Dv~vse-~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 88 LFADVRVSE-EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhheeEecc-cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCcee
Confidence 355666653 556666677789999998865544443 4466677766 57899999878888899987643 2
Q ss_pred EEeccCCC-CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 643 VDWNDLHE-MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 643 v~~~~~~~-~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
........ .-..++.| |++..++..|+-+.|-|+.......... .......+.++..+++-
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~-------~~n~g~g~~sv~vsdnr 225 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIG-------SYNTGPGTYSVSVSDNR 225 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEE-------EEecCCceEEEEecCCe
Confidence 22222222 23456665 8888999999999999998754332110 00112267777777653
No 473
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=54.32 E-value=2.2e+02 Score=30.57 Aligned_cols=118 Identities=12% Similarity=0.112 Sum_probs=67.8
Q ss_pred CcEEEEECCCCcEEEec-cCCCCEEEEEEccCCCEEEEEE------CCCcEEEEECCCCeeeeccccccccccccCCCCC
Q 004404 630 AKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGS------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (755)
Q Consensus 630 gtVrIWDl~t~~~v~~~-~~~~~VtsvafSPdG~~LasGs------~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (755)
..|++||+.+.+-...- ...+.|+++.|..+.+.++.|. ....+..||+.+........ ..-..-.++
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~-----~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG-----GSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC-----cccccCCCc
Confidence 45899999887655332 3557899999997677777764 34568889988776533210 000122467
Q ss_pred eEEEEEccC-CCeEEEEEE-C--CCcEEEEECCcc--eEE-eecCCccEEEEEEEEE
Q 004404 703 ITGFQFAPG-SSSEVLVTS-A--DSRIRVVDGIDL--VHK-FKGENYVQYMVCIVLF 752 (755)
Q Consensus 703 Vtsl~fsPd-g~~~L~sgs-~--Dg~IrVWD~~~l--l~~-~~GH~~~V~sv~fs~F 752 (755)
|+.+.+... +..+.+.|. . +..|..||+.+. +.. ..+-...|..+.+.+.
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 888877543 332444442 2 345777884332 222 2222344666665553
No 474
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.25 E-value=81 Score=36.32 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=26.4
Q ss_pred CEEEEEecCC----cEEEEEeCCCcEEEEECCCCcEE
Q 004404 569 DVLDLSWSKS----QHLLSSSMDKTVRLWHLSSKTCL 601 (755)
Q Consensus 569 ~V~~L~~spd----~~LaSgs~DgtVrLWDl~t~~~~ 601 (755)
.+...+|+|+ ..|+.-+.|.+||+|++...+.+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 3667889986 57888899999999999866544
No 475
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=53.79 E-value=39 Score=24.13 Aligned_cols=39 Identities=10% Similarity=0.022 Sum_probs=26.5
Q ss_pred CCcEEEE-EECCCcEEEEECCCCcEEEeccCCCCEEEEEE
Q 004404 619 DDRYFIS-GSLDAKVRIWSIPERQVVDWNDLHEMVTAACY 657 (755)
Q Consensus 619 dg~~LaS-gS~DgtVrIWDl~t~~~v~~~~~~~~Vtsvaf 657 (755)
++++|++ .-.+++|.++|..+++.+...........++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4554444 55688999999998888766555555555555
No 476
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=51.86 E-value=45 Score=39.06 Aligned_cols=37 Identities=5% Similarity=0.030 Sum_probs=28.9
Q ss_pred CEEEEEEcc----CCCEEEEEECCCcEEEEECCCCeeeecc
Q 004404 651 MVTAACYTP----DGQGALVGSYKGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 651 ~VtsvafSP----dG~~LasGs~DG~I~lwDl~~~~~~~~~ 687 (755)
.+.++++++ +..+|++-+.|+.+|+||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 456667766 6789999999999999999999996554
No 477
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=51.76 E-value=4.7e+02 Score=30.84 Aligned_cols=311 Identities=10% Similarity=-0.019 Sum_probs=0.0
Q ss_pred cccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcE
Q 004404 401 ERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI 480 (755)
Q Consensus 401 ~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtV 480 (755)
..+............-+.|-...+|.|+.+|.-+.=... .............+|..+..+-.|+ |..|+.+| |
T Consensus 155 v~~~r~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~-----gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v 227 (671)
T COG3292 155 VKDVRPLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGR-----GKALQLASPPLDKAINALIADVQGR-LWVGTDQG-V 227 (671)
T ss_pred ccCccccccCccceeeeeeccCcEEEecCCcceEEcccc-----ceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-e
Q ss_pred EEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCce
Q 004404 481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI 560 (755)
Q Consensus 481 rVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i 560 (755)
.+.+.+..+..... ..-....+..+.-...+.+-+....+-........... -+.
T Consensus 228 ~~~e~~G~~~sn~~----~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq---------------------~~~ 282 (671)
T COG3292 228 YLQEAEGWRASNWG----PMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQ---------------------IPL 282 (671)
T ss_pred EEEchhhccccccC----CCCcchheeeeecccCCCEEEeecccceeEecCCCCcc---------------------ccc
Q ss_pred EEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECC--------------------------------------------
Q 004404 561 CSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS-------------------------------------------- 596 (755)
Q Consensus 561 ~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~-------------------------------------------- 596 (755)
....--...|..+....++.|.+++.++.+++-+-.
T Consensus 283 ~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~s 362 (671)
T COG3292 283 SKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGS 362 (671)
T ss_pred cccCCccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCC
Q ss_pred CCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-CcEEEeccCC--CCEEEEEEccCCCEEEEEECCC
Q 004404 597 SKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWNDLH--EMVTAACYTPDGQGALVGSYKG 671 (755)
Q Consensus 597 t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-~~~v~~~~~~--~~VtsvafSPdG~~LasGs~DG 671 (755)
++..++... ....|+.+++.. ...+-.|+...-+-.|+..+ +.+....... ..|.++.=.|+++ |..|+.+|
T Consensus 363 tG~~v~sv~q~Rg~nit~~~~d~--~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~G 439 (671)
T COG3292 363 TGELVRSVHQLRGMNITTTLEDS--RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGG 439 (671)
T ss_pred CCcEEEEeeeccccccchhhhcc--CCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCC
Q ss_pred cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECCcceEEeecCCccEEEEEEEE
Q 004404 672 SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 672 ~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
.++. +.+.++....+.+ .........|..+.+-|+|+.+++.|+. |..|+....+..++-....+....|.+
T Consensus 440 lvk~-~pe~~~v~n~ln~----~~~~l~~s~~~~lg~~~~g~Lw~a~g~g---va~~~sq~~~~~~~l~~~~q~qy~f~~ 511 (671)
T COG3292 440 LVKR-DPESGRVLNLLNP----GSHGLDGSRVEQLGLGPDGRLWLAAGSG---VAAWESQRRMFVPILDLTGQRQYSFVP 511 (671)
T ss_pred eEec-Cccccchhccccc----ccCcCCcchhhhhccCCCCceEEEecce---eeeeccccceecccccccceeeEEEEE
Q ss_pred EEe
Q 004404 752 FFF 754 (755)
Q Consensus 752 F~f 754 (755)
.-|
T Consensus 512 ~~~ 514 (671)
T COG3292 512 VGG 514 (671)
T ss_pred ccC
No 478
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=51.60 E-value=47 Score=23.56 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=20.4
Q ss_pred ecccCCEEEEEEcCCCCEEEEEEC-C--CcEEEE
Q 004404 453 QAHNGSIWSIKFSLDGRYLASAGE-D--CVIHVW 483 (755)
Q Consensus 453 ~gH~~~I~sI~fSpdg~~LaTgs~-D--GtVrVW 483 (755)
....+......|+|||++|+-++. + |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345567888999999997766554 4 555555
No 479
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=51.51 E-value=33 Score=40.70 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=50.2
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcE
Q 004404 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (755)
Q Consensus 646 ~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~I 725 (755)
......++++.-+|.|+.++.+..||+|++|+........... ...+-..+.|...| |+++..|.++
T Consensus 11 ~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~----------~~~p~~nlv~tnhg---l~~~tsdrr~ 77 (1636)
T KOG3616|consen 11 PKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE----------EAKPKENLVFTNHG---LVTATSDRRA 77 (1636)
T ss_pred ccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh----------hcCCccceeeeccc---eEEEeccchh
Confidence 3345678889999999999999999999999987655432211 12333445666654 6777778887
Q ss_pred EEEE
Q 004404 726 RVVD 729 (755)
Q Consensus 726 rVWD 729 (755)
--|.
T Consensus 78 la~~ 81 (1636)
T KOG3616|consen 78 LAWK 81 (1636)
T ss_pred heee
Confidence 7786
No 480
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=51.14 E-value=3.7e+02 Score=32.37 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=28.4
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 004404 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQV 485 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl 485 (755)
.+.|..|.|.++++.++..-..|.|.+|+.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 678999999999999999999999999999
No 481
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=48.97 E-value=4.8e+02 Score=30.15 Aligned_cols=124 Identities=10% Similarity=0.086 Sum_probs=61.4
Q ss_pred EEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCC----EEEEEEccCCCEEEEEEC-------------CCcEEE
Q 004404 613 IQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM----VTAACYTPDGQGALVGSY-------------KGSCHL 675 (755)
Q Consensus 613 VafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~----VtsvafSPdG~~LasGs~-------------DG~I~l 675 (755)
+.+.+ +|.+++... ..+..+|+.. +++........ --.+..-|+|++|+.+.. .-.|..
T Consensus 153 ~~~l~-nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ive 228 (477)
T PF05935_consen 153 FKQLP-NGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVE 228 (477)
T ss_dssp EEE-T-TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred eeEcC-CCCEEEecC--CceEEEcCCC-CEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEE
Confidence 55566 777766544 7888888764 44433322221 235677899999888772 223566
Q ss_pred EECCCCeeeeccccccccc--cc-----------c---CCC--CCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceE
Q 004404 676 YNTSENKLQQKSPINLQNK--KK-----------R---SHQ--RKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVH 735 (755)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~--~~-----------~---~h~--~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~ 735 (755)
+| .+|+.+..+...-... .. . ... -.++++.+.+....+|+++-.-..|...| ++++.-
T Consensus 229 vd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 229 VD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp E--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred EC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 66 6776665543211100 00 0 000 24899999995554555555556888888 566666
Q ss_pred EeecCC
Q 004404 736 KFKGEN 741 (755)
Q Consensus 736 ~~~GH~ 741 (755)
.+-.|.
T Consensus 308 ilg~~~ 313 (477)
T PF05935_consen 308 ILGPPG 313 (477)
T ss_dssp EES-ST
T ss_pred EeCCCC
Confidence 666554
No 482
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=48.94 E-value=5.4e+02 Score=31.01 Aligned_cols=152 Identities=14% Similarity=0.247 Sum_probs=81.6
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEE--Eee--cCC------ceEEEEEeeCCCcEEEEEEC-CC---c
Q 004404 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK--IFS--HSD------YVTCIQFNPVDDRYFISGSL-DA---K 631 (755)
Q Consensus 567 ~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~--~~~--h~~------~VtsVafsP~dg~~LaSgS~-Dg---t 631 (755)
...|..+.+.++ ..+++....|.|.+||...+.... .+. +.. .|.....-. ...++++.+. .+ .
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~-~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELEN-GKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccccc-CCceEEEEEEcCCCcEE
Confidence 456888999865 778899999999999993322111 222 222 222222111 2345555444 32 3
Q ss_pred EEEEEC--CCCcEEEec---cCCCCEE--EEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeE
Q 004404 632 VRIWSI--PERQVVDWN---DLHEMVT--AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (755)
Q Consensus 632 VrIWDl--~t~~~v~~~---~~~~~Vt--svafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (755)
.+++.+ ....+.... ....... .+||. +|+...- .++.|.+|.+...+....+.++..... ....+.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~---~~~~~v 281 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDK---ESDDLV 281 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhcc---ccccce
Confidence 677777 333333321 1112222 33343 4543333 678999999999888877665411111 112344
Q ss_pred EEE-EccCCCeEEEEEECCCcEEEEE
Q 004404 705 GFQ-FAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 705 sl~-fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
++. -+|+ +++.+ .+.+|.+.|
T Consensus 282 Sl~~~s~n---RvLLs-~~nkIyLld 303 (670)
T PF10395_consen 282 SLKPPSPN---RVLLS-VNNKIYLLD 303 (670)
T ss_pred EeecCCCC---eEEEE-cCCEEEEEe
Confidence 443 2332 44443 456899999
No 483
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=48.36 E-value=2e+02 Score=33.13 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=76.7
Q ss_pred CCCceEEeccCCCCEEEEEecCC--------cEEEEEeCCCcEEEEECCC-CcEEEEeecCCceEEEEEee---CCCcEE
Q 004404 556 SDKPICSFQGHLDDVLDLSWSKS--------QHLLSSSMDKTVRLWHLSS-KTCLKIFSHSDYVTCIQFNP---VDDRYF 623 (755)
Q Consensus 556 s~k~i~~l~gH~~~V~~L~~spd--------~~LaSgs~DgtVrLWDl~t-~~~~~~~~h~~~VtsVafsP---~dg~~L 623 (755)
.++.+-++.-|..- -+.|.|. ..-+.|-.+..|.-.|.+. +..+.......+++.-.|+. ....++
T Consensus 499 rGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyI 576 (776)
T COG5167 499 RGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYI 576 (776)
T ss_pred cceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccccCceE
Confidence 45556666666553 4566764 1234566666676666653 44444444444444434432 145799
Q ss_pred EEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 624 ISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 624 aSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
+.++..|-|++||.-..... .+......|..+..+.+|++|++.+ ...+.+-|+.
T Consensus 577 a~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 577 AAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred EEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 99999999999996543322 3344567889999999999998877 4567777764
No 484
>PHA02790 Kelch-like protein; Provisional
Probab=47.78 E-value=3.9e+02 Score=30.78 Aligned_cols=106 Identities=11% Similarity=0.083 Sum_probs=57.9
Q ss_pred cEEEEEeCC-----CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECC--CcEEEEECCCCcEEEeccCC
Q 004404 579 QHLLSSSMD-----KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD--AKVRIWSIPERQVVDWNDLH 649 (755)
Q Consensus 579 ~~LaSgs~D-----gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~D--gtVrIWDl~t~~~v~~~~~~ 649 (755)
..++.|+.+ .++..||..+.+....-. ....-.+++. - ++.+.+.|+.+ ..+..||..+.+-.......
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 445666654 357778887765433222 1111122222 2 67777777754 35888887766544333333
Q ss_pred CCEEE-EEEccCCCEEEEEECCC---cEEEEECCCCeeeec
Q 004404 650 EMVTA-ACYTPDGQGALVGSYKG---SCHLYNTSENKLQQK 686 (755)
Q Consensus 650 ~~Vts-vafSPdG~~LasGs~DG---~I~lwDl~~~~~~~~ 686 (755)
..... .+..-+|+..++|+.++ .+..||..+..-...
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence 22211 12223677777777653 477899887765543
No 485
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=47.35 E-value=97 Score=35.08 Aligned_cols=103 Identities=13% Similarity=0.178 Sum_probs=69.0
Q ss_pred EEEEEeCCCcEEEE-ECCCC-----cEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCE
Q 004404 580 HLLSSSMDKTVRLW-HLSSK-----TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMV 652 (755)
Q Consensus 580 ~LaSgs~DgtVrLW-Dl~t~-----~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~V 652 (755)
.|+.++.||-|.-| |++.+ ..++.++ ....+..+.-.. +.+-|++-+..|++.++.....+.+-....-..+
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~ 360 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAP 360 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhhcCc
Confidence 47788888888887 44332 1223333 234454443333 4567888889999998876665555444444577
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 653 tsvafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
.-+++||.+.+|++-. .|.|+++.+++....
T Consensus 361 ~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Pe 391 (733)
T COG4590 361 QLVAMSPNQAYLLSED-QGKIRLAQLENRNPE 391 (733)
T ss_pred ceeeeCcccchheeec-CCceEEEEecCCCCC
Confidence 7899999999998864 678999998876554
No 486
>PRK04081 hypothetical protein; Provisional
Probab=46.59 E-value=11 Score=37.44 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=52.1
Q ss_pred cccCCCccccCCCceecccCCCCcccccccceeeeccCCCceeEEeccccCCccceeeeec-CCceecHHHHHHhc
Q 004404 262 SINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVG-TGRQLTIEEFEMCV 336 (755)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ld~g~~~~~~e~~~dG~~~~l~d~~-tg~~lt~~e~~~~~ 336 (755)
++.+|.-|.++.++......-...+.....|..|..-.+|+..|++|+..+-..-+|+|.. +-+.|+.||...|+
T Consensus 20 ~~~~L~gC~sns~~~~~~~~~~~~s~kqGafviIeE~a~G~YKI~eE~Ps~~Trvilr~~dG~ER~LS~eE~dkLi 95 (207)
T PRK04081 20 VMVGLVGCGSNSDQNQKENSSLQASQQQGAFVIIEEQADGSYKILEEYPSSETRVVLRDLDGTERVLSQEEIDKLI 95 (207)
T ss_pred HHHHHhcccCCcccchhhhHHHHHHhhcCcEEEEEecCCCceEeeeecCCCcceEEEecCCCcccccCHHHHHHHH
Confidence 4455557875544332100001223456678999999999999999998887778899977 78899999977766
No 487
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=46.32 E-value=4.1e+02 Score=28.58 Aligned_cols=106 Identities=11% Similarity=0.158 Sum_probs=56.6
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCcE---EEEee---cCCceEEEEEeeCCCcEEEEEEC-----CCcEEEEECCCCc
Q 004404 578 SQHLLSSSMD-----KTVRLWHLSSKTC---LKIFS---HSDYVTCIQFNPVDDRYFISGSL-----DAKVRIWSIPERQ 641 (755)
Q Consensus 578 d~~LaSgs~D-----gtVrLWDl~t~~~---~~~~~---h~~~VtsVafsP~dg~~LaSgS~-----DgtVrIWDl~t~~ 641 (755)
+..++.|+.+ ..+..+|+.+.+. ...+. ....-.+++.. ++.+++.|+. ...+..||+.+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 4556666654 3566777766543 12221 11111223332 5677777764 2358888988766
Q ss_pred EEEeccCC--CCEEEEEEccCCCEEEEEECCCc----EEEEECCCCeeee
Q 004404 642 VVDWNDLH--EMVTAACYTPDGQGALVGSYKGS----CHLYNTSENKLQQ 685 (755)
Q Consensus 642 ~v~~~~~~--~~VtsvafSPdG~~LasGs~DG~----I~lwDl~~~~~~~ 685 (755)
-....... .....++...++++.+.|+.++. +..||+.+.+-..
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~ 200 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK 200 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence 44332221 12222333446777777876543 5688888776543
No 488
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=46.22 E-value=4.1e+02 Score=28.57 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=46.2
Q ss_pred CcEEEEEeC-----CCcEEEEECCCCcEEEE--eecCCceEEEEEeeCCCcEEEEEECCCc----EEEEECCCCcEEEec
Q 004404 578 SQHLLSSSM-----DKTVRLWHLSSKTCLKI--FSHSDYVTCIQFNPVDDRYFISGSLDAK----VRIWSIPERQVVDWN 646 (755)
Q Consensus 578 d~~LaSgs~-----DgtVrLWDl~t~~~~~~--~~h~~~VtsVafsP~dg~~LaSgS~Dgt----VrIWDl~t~~~v~~~ 646 (755)
+..++.|+. ...+..||+.+.+-... +.........+..- ++++++.|+.++. +.+||..+.+-....
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 344555553 24588888876543322 22111222222223 6778888876643 568898876644332
Q ss_pred cC---CCCE---EEE-EEccCCCEEEEEECC
Q 004404 647 DL---HEMV---TAA-CYTPDGQGALVGSYK 670 (755)
Q Consensus 647 ~~---~~~V---tsv-afSPdG~~LasGs~D 670 (755)
.. ..+. ... +...++++++.|+.+
T Consensus 203 ~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 203 DPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 21 1111 111 122356777788765
No 489
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=43.47 E-value=5.1e+02 Score=28.92 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=50.4
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC-CcE-EEEECCCCcE---E-EeccCCCCEEE
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-AKV-RIWSIPERQV---V-DWNDLHEMVTA 654 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D-gtV-rIWDl~t~~~---v-~~~~~~~~Vts 654 (755)
++.+..+|.+.-||..+......+..-.-.+.++.+| |+.+++.+-.- ..| ++| ++..+. - -.....+..-.
T Consensus 192 ~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~-d~sfvl~~Et~~~ri~ryw-i~g~k~gt~EvFa~~LPG~PDN 269 (376)
T KOG1520|consen 192 ALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSP-DGSFVLVAETTTARIKRYW-IKGPKAGTSEVFAEGLPGYPDN 269 (376)
T ss_pred eecCCCccceEEecCcccchhhhhhcccccccccCCC-CCCEEEEEeeccceeeeeE-ecCCccCchhhHhhcCCCCCcc
Confidence 3345567888888887766544445556678899999 88888776432 233 444 333222 1 11224555556
Q ss_pred EEEccCCCEEEE
Q 004404 655 ACYTPDGQGALV 666 (755)
Q Consensus 655 vafSPdG~~Las 666 (755)
+..+++|.+-+.
T Consensus 270 IR~~~~G~fWVa 281 (376)
T KOG1520|consen 270 IRRDSTGHFWVA 281 (376)
T ss_pred eeECCCCCEEEE
Confidence 677788865444
No 490
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=42.94 E-value=8.1e+02 Score=31.08 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred cEEEEECCCCcEEEEeecCCc-----eEEEEEeeCCCc-EEEEEEC-----------CCcEEEEEC--CCCcEEEeccCC
Q 004404 589 TVRLWHLSSKTCLKIFSHSDY-----VTCIQFNPVDDR-YFISGSL-----------DAKVRIWSI--PERQVVDWNDLH 649 (755)
Q Consensus 589 tVrLWDl~t~~~~~~~~h~~~-----VtsVafsP~dg~-~LaSgS~-----------DgtVrIWDl--~t~~~v~~~~~~ 649 (755)
.|++.|..+++.+..+.+... |..+.|+..+.. ++++|.. +|.++.|++ ...++.-.....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
-+-.-.++.|-..++++|- ...+++||+-..+++.. ...+.-...|+.+++.-. .+++|...-.|.++-
T Consensus 934 ~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk-------~e~k~~p~~Is~iqt~~~---RI~VgD~qeSV~~~~ 1002 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRK-------CELKFIPNRISSIQTYGA---RIVVGDIQESVHFVR 1002 (1205)
T ss_pred CCccceEEeccCCEEEEec-ccEEEEeeCChHHHHhh-------hhhccCceEEEEEeecce---EEEEeeccceEEEEE
Q ss_pred ---CCcceEEeecCCcc--EEEEEEE
Q 004404 730 ---GIDLVHKFKGENYV--QYMVCIV 750 (755)
Q Consensus 730 ---~~~ll~~~~GH~~~--V~sv~fs 750 (755)
..+.+..|-...-. |..+.+.
T Consensus 1003 y~~~~n~l~~fadD~~pR~Vt~~~~l 1028 (1205)
T KOG1898|consen 1003 YRREDNQLIVFADDPVPRHVTALELL 1028 (1205)
T ss_pred EecCCCeEEEEeCCCccceeeEEEEe
No 491
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.84 E-value=1.5e+02 Score=38.00 Aligned_cols=156 Identities=14% Similarity=0.024 Sum_probs=88.0
Q ss_pred CCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEE--------cCCCCEEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF--------SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 428 ~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~f--------Spdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
+-|..+.+|+..++.- ++.+.+-...|..|.. -|.=++|+.-+.--.|.|+-+.-.+..........
T Consensus 96 TiDn~L~lWny~~~~e-----~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~ 170 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE-----LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNT 170 (1311)
T ss_pred EeCCeEEEEEcCCCCc-----cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccc
Confidence 5678888999876332 2334455566777664 23334444444445677766543332222110000
Q ss_pred ----cCccccEEEeecCCCCceeccccCCCceeeecccccccccc--------cccCcccccceeeecCCCceEEec-cC
Q 004404 500 ----DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS--------LSLDHMVVPETVFALSDKPICSFQ-GH 566 (755)
Q Consensus 500 ----~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s--------~s~d~~~~~~~v~~~s~k~i~~l~-gH 566 (755)
......+.++....+|+++.+|..++..+........+... .+.-..++|. +..+. .+
T Consensus 171 ~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs---------~~~~~~~~ 241 (1311)
T KOG1900|consen 171 SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS---------LLSVPGSS 241 (1311)
T ss_pred ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh---------hhcCCCCC
Confidence 11233456777788899999987776555443322111100 0000011111 22333 67
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEECCC
Q 004404 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (755)
Q Consensus 567 ~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t 597 (755)
..+|..|+...+ +.+.+-+..++|..|++..
T Consensus 242 ~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 242 KDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 789999999887 7888999999999999986
No 492
>PLN02153 epithiospecifier protein
Probab=41.75 E-value=4.9e+02 Score=28.22 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=54.6
Q ss_pred CCcEEEEEeCC-------CcEEEEECCCCcEEEEeec---CC----ceEEEEEeeCCCcEEEEEECC-----CcEEEEEC
Q 004404 577 KSQHLLSSSMD-------KTVRLWHLSSKTCLKIFSH---SD----YVTCIQFNPVDDRYFISGSLD-----AKVRIWSI 637 (755)
Q Consensus 577 pd~~LaSgs~D-------gtVrLWDl~t~~~~~~~~h---~~----~VtsVafsP~dg~~LaSgS~D-----gtVrIWDl 637 (755)
.+..++.|+.+ ..+.+||+.+.+-...-.. .. ....+.+ ++.+++.|+.+ ..+.+||+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEEC
Confidence 34555556653 3578888877543322111 11 1222222 56777777753 34788998
Q ss_pred CCCcEEEeccC-----CC-CEEEEEEccCCCEEEEEECC-----------CcEEEEECCCCeee
Q 004404 638 PERQVVDWNDL-----HE-MVTAACYTPDGQGALVGSYK-----------GSCHLYNTSENKLQ 684 (755)
Q Consensus 638 ~t~~~v~~~~~-----~~-~VtsvafSPdG~~LasGs~D-----------G~I~lwDl~~~~~~ 684 (755)
.+.+-...... .. .....+..-++++++.|+.+ ..+.+||+.+.+-.
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 87654432221 11 11112222356677777653 24778898876654
No 493
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=41.28 E-value=86 Score=22.15 Aligned_cols=30 Identities=3% Similarity=0.077 Sum_probs=21.3
Q ss_pred CCCCeEEEEEccCCCeEEEEEECC--CcEEEE
Q 004404 699 HQRKITGFQFAPGSSSEVLVTSAD--SRIRVV 728 (755)
Q Consensus 699 h~~~Vtsl~fsPdg~~~L~sgs~D--g~IrVW 728 (755)
....-....|+|||+.++.+...+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445677889999999766666666 766666
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=41.12 E-value=52 Score=28.83 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=31.5
Q ss_pred EECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEE
Q 004404 626 GSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGS 668 (755)
Q Consensus 626 gS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs 668 (755)
+..+|.+..||..+++...+...-...+.|++++|+.+|+++-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 3456889999999998766655556889999999999877753
No 495
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=40.96 E-value=4.8 Score=45.44 Aligned_cols=108 Identities=11% Similarity=0.203 Sum_probs=72.9
Q ss_pred EEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEE-EECCCcEEEEECCCCeeeecccc
Q 004404 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALV-GSYKGSCHLYNTSENKLQQKSPI 689 (755)
Q Consensus 611 tsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~Las-Gs~DG~I~lwDl~~~~~~~~~~i 689 (755)
-...|-| .+.-++.++.+-.|..||-... .............++|.-+|..+++ +-..+.+++||+.+..-.+.
T Consensus 38 i~~~w~~-e~~nlavaca~tiv~~YD~agq-~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL--- 112 (615)
T KOG2247|consen 38 IIHRWRP-EGHNLAVACANTIVIYYDKAGQ-VILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL--- 112 (615)
T ss_pred ceeeEec-CCCceehhhhhhHHHhhhhhcc-eecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH---
Confidence 3446777 5555788888889999995443 3333344556677888888876665 66688999999987543321
Q ss_pred ccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 690 NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 690 ~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
.. -..|.... +.|++..+ .++.+-..+.+.|++.
T Consensus 113 E~----gg~~s~sl--l~wsKg~~-el~ig~~~gn~viynh 146 (615)
T KOG2247|consen 113 ES----GGTSSKSL--LAWSKGTP-ELVIGNNAGNIVIYNH 146 (615)
T ss_pred hc----cCcchHHH--HhhccCCc-cccccccccceEEEec
Confidence 10 01222222 67898887 7888889999999993
No 496
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=39.36 E-value=6.1e+02 Score=28.63 Aligned_cols=113 Identities=10% Similarity=0.087 Sum_probs=60.5
Q ss_pred eEEEEEeeCCCcEEEEEECCCcEEEEECCCCc-EEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccc
Q 004404 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 610 VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~-~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
...+..++ ++.+++.+..-..++-||--... ..........++++.+.+++..++++ ..|.+.. ....++.-....
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 34455566 66666555433223334322111 11223345678999999999877766 4565543 333333111000
Q ss_pred cccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+. ..........++++.|.+++. +++++..|.|.+..
T Consensus 318 f~--~~~~~~~~~~l~~v~~~~d~~--~~a~G~~G~v~~s~ 354 (398)
T PLN00033 318 FE--EADIKSRGFGILDVGYRSKKE--AWAAGGSGILLRST 354 (398)
T ss_pred ee--ecccCCCCcceEEEEEcCCCc--EEEEECCCcEEEeC
Confidence 00 001111234689999998874 77778888887775
No 497
>PLN02193 nitrile-specifier protein
Probab=37.69 E-value=6.8e+02 Score=28.72 Aligned_cols=104 Identities=11% Similarity=0.191 Sum_probs=56.1
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCcEEEEee-----cCCceEEEEEeeCCCcEEEEEECCC-----cEEEEECCCCcE
Q 004404 578 SQHLLSSSMD-----KTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPERQV 642 (755)
Q Consensus 578 d~~LaSgs~D-----gtVrLWDl~t~~~~~~~~-----h~~~VtsVafsP~dg~~LaSgS~Dg-----tVrIWDl~t~~~ 642 (755)
+..++.|+.+ ..+..||+.+.+-...-. ....-.+++.. ++++++.|+.++ .+..||+.+.+-
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 3445555544 357888887764433211 11111222222 567777777543 467888877654
Q ss_pred EEeccC------CCCEEEEEEccCCCEEEEEECC----CcEEEEECCCCeeee
Q 004404 643 VDWNDL------HEMVTAACYTPDGQGALVGSYK----GSCHLYNTSENKLQQ 685 (755)
Q Consensus 643 v~~~~~------~~~VtsvafSPdG~~LasGs~D----G~I~lwDl~~~~~~~ 685 (755)
...... ......+. -+++.++.|+.+ ..+.+||+.+.+-..
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQ 357 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEE
Confidence 332211 11122222 257777777755 458999999876544
No 498
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=37.54 E-value=1.2e+02 Score=34.31 Aligned_cols=171 Identities=14% Similarity=0.071 Sum_probs=86.7
Q ss_pred ecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeee-eecccccCccccEE-EeecCCCCceeccccCCCceeee
Q 004404 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE-LLEKQEDGHLNMLL-LANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 453 ~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~-l~~~~~~~~~~~v~-~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
..-...|..+-..|||+.|+.-+. ..+.|+++.+.....+ +...........+. ....-..+..+.....++.+..|
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 344567788889999997776655 6899999876543322 21111111111111 00011122333333344433222
Q ss_pred cccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCc
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~ 609 (755)
-..+.-... .-..++.++-...+|..+.--.+ .-+++-+..|++.++.....+.+-.-..-..
T Consensus 296 Fdvr~~~~p----------------~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~ 359 (733)
T COG4590 296 FDVRRDGQP----------------HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQA 359 (733)
T ss_pred eeeecCCCC----------------cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcC
Confidence 211100000 00111222222223333322112 4477888889998887655554433333446
Q ss_pred eEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE
Q 004404 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (755)
Q Consensus 610 VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~ 642 (755)
+.-++++| .++++++- ..|+|+++.+.+..+
T Consensus 360 ~~~~~~Sp-~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 360 PQLVAMSP-NQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred cceeeeCc-ccchheee-cCCceEEEEecCCCC
Confidence 77789999 88888763 468899998877543
No 499
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=37.43 E-value=5.6e+02 Score=27.63 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCC-------------ceEEEEEeeCCCcEEEEEEC------------------CCcE
Q 004404 584 SSMDKTVRLWHLSSKTCLKIFSHSD-------------YVTCIQFNPVDDRYFISGSL------------------DAKV 632 (755)
Q Consensus 584 gs~DgtVrLWDl~t~~~~~~~~h~~-------------~VtsVafsP~dg~~LaSgS~------------------DgtV 632 (755)
|-..|.+.+.| .+.+.+..+.... ....+.+.+ ++..|++.-. |+.+
T Consensus 21 g~g~G~~~~lD-~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~-~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~ 98 (299)
T PF14269_consen 21 GYGYGSYVILD-SSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITP-DGTALVTAYNPTPADLSPVGGPEDGWILDDVF 98 (299)
T ss_pred ccccceEEEEC-CCCcEEEEEECCCcccccccccCccCCccceEEcC-CCcEEEEEccceeccccccCcCCCccEeccee
Q ss_pred EEEECCCCcEE-EeccCC---------------------------CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 633 RIWSIPERQVV-DWNDLH---------------------------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 633 rIWDl~t~~~v-~~~~~~---------------------------~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
.-.|+.+++++ .|.... --+++|...++|.+|++.-.-..|.+.|..+++.+
T Consensus 99 ~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~ 178 (299)
T PF14269_consen 99 QEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKII 178 (299)
T ss_pred EEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEE
Q ss_pred eccccccccccccCCCCCeEE-----EEEccCCCeEEEEEECCCcEEEEE
Q 004404 685 QKSPINLQNKKKRSHQRKITG-----FQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vts-----l~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
..+. +....=.. ++|-.+-. ++-.+..+++|.|+|
T Consensus 179 W~lg---------G~~~~df~~~~~~f~~QHdar-~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 179 WRLG---------GKRNSDFTLPATNFSWQHDAR-FLNESNDDGTISLFD 218 (299)
T ss_pred EEeC---------CCCCCcccccCCcEeeccCCE-EeccCCCCCEEEEEc
No 500
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=36.56 E-value=3.9e+02 Score=28.70 Aligned_cols=60 Identities=13% Similarity=0.013 Sum_probs=41.2
Q ss_pred cEEEEEECCCcEEEEECCC--CcEEEeccCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCe
Q 004404 621 RYFISGSLDAKVRIWSIPE--RQVVDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENK 682 (755)
Q Consensus 621 ~~LaSgS~DgtVrIWDl~t--~~~v~~~~~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~ 682 (755)
++|+.|+++|...+. +.. ..+.+.. ....|+.+...+.-+.|++-+ ....++.|++..-.
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~-~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~ 76 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKLI-GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALV 76 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEec-CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhh
Confidence 589999988865554 554 3444444 355899999998777776644 44459999995433
Done!