Query 004404
Match_columns 755
No_of_seqs 724 out of 3652
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 00:09:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 7.8E-41 2.7E-45 391.5 42.3 427 300-751 29-591 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 1.2E-37 3.9E-42 358.5 40.6 371 292-751 183-559 (577)
3 2ymu_A WD-40 repeat protein; u 100.0 3.6E-37 1.2E-41 354.4 41.1 401 291-751 18-477 (577)
4 3ow8_A WD repeat-containing pr 100.0 5.7E-36 1.9E-40 322.3 37.6 287 377-730 29-319 (321)
5 1nr0_A Actin interacting prote 100.0 1E-36 3.5E-41 356.7 34.3 367 317-730 130-609 (611)
6 3frx_A Guanine nucleotide-bind 100.0 4.6E-35 1.6E-39 314.2 40.2 279 420-730 29-315 (319)
7 2pbi_B Guanine nucleotide-bind 100.0 7.2E-36 2.5E-40 325.7 32.4 286 333-729 58-354 (354)
8 4gqb_B Methylosome protein 50; 100.0 6.4E-36 2.2E-40 325.8 31.3 229 422-730 94-329 (344)
9 2ynn_A Coatomer subunit beta'; 100.0 3.9E-35 1.3E-39 312.3 35.9 265 449-751 6-280 (304)
10 1vyh_C Platelet-activating fac 100.0 4.3E-35 1.5E-39 325.9 37.5 265 422-730 121-409 (410)
11 1got_B GT-beta; complex (GTP-b 100.0 1.1E-34 3.9E-39 313.7 39.5 267 422-729 68-340 (340)
12 1got_B GT-beta; complex (GTP-b 100.0 1.2E-34 4.2E-39 313.4 39.2 271 449-751 48-322 (340)
13 1vyh_C Platelet-activating fac 100.0 1.8E-34 6.1E-39 321.0 37.6 263 450-751 102-390 (410)
14 4aow_A Guanine nucleotide-bind 100.0 1.4E-33 4.7E-38 300.7 39.9 278 421-729 51-334 (340)
15 1pgu_A Actin interacting prote 100.0 4.6E-34 1.6E-38 329.5 38.5 429 292-751 21-594 (615)
16 3ow8_A WD repeat-containing pr 100.0 8.9E-34 3E-38 305.1 35.4 265 450-751 26-300 (321)
17 2pbi_B Guanine nucleotide-bind 100.0 3.3E-33 1.1E-37 304.6 39.4 274 449-751 57-336 (354)
18 4g56_B MGC81050 protein; prote 100.0 5.9E-34 2E-38 311.1 33.1 294 377-730 39-341 (357)
19 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-33 4.5E-38 306.2 35.0 282 422-730 29-333 (345)
20 3iz6_a 40S ribosomal protein R 100.0 4.9E-34 1.7E-38 313.8 31.3 304 363-730 50-373 (380)
21 1gxr_A ESG1, transducin-like e 100.0 5.1E-33 1.7E-37 295.0 37.9 268 423-729 65-334 (337)
22 2ynn_A Coatomer subunit beta'; 100.0 4.5E-33 1.6E-37 296.4 36.9 266 422-730 26-300 (304)
23 2xzm_R RACK1; ribosome, transl 100.0 1.1E-32 3.6E-37 298.4 39.1 277 422-730 40-338 (343)
24 2hes_X YDR267CP; beta-propelle 100.0 1.5E-32 5.2E-37 296.0 34.9 282 418-730 21-326 (330)
25 4ery_A WD repeat-containing pr 100.0 5.6E-32 1.9E-36 287.3 37.5 264 449-751 16-289 (312)
26 4gqb_B Methylosome protein 50; 100.0 4.4E-32 1.5E-36 295.5 37.1 224 453-751 79-309 (344)
27 3iz6_a 40S ribosomal protein R 100.0 4.1E-33 1.4E-37 306.4 29.1 283 446-751 56-354 (380)
28 1erj_A Transcriptional repress 100.0 9.8E-32 3.3E-36 296.8 40.0 273 454-751 62-362 (393)
29 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-33 8.3E-38 352.3 28.7 435 290-751 616-1188(1249)
30 4ery_A WD repeat-containing pr 100.0 2.6E-31 9E-36 282.1 39.8 265 422-730 36-310 (312)
31 4g56_B MGC81050 protein; prote 100.0 1.1E-32 3.8E-37 301.0 29.7 291 422-751 17-321 (357)
32 3dm0_A Maltose-binding peripla 100.0 1.3E-31 4.4E-36 317.6 41.0 282 419-731 393-692 (694)
33 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-33 6.4E-38 353.3 25.8 441 292-751 660-1228(1249)
34 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.3E-32 2.8E-36 292.1 35.3 279 446-751 5-313 (345)
35 2oaj_A Protein SNI1; WD40 repe 100.0 1.9E-32 6.4E-37 334.9 32.8 438 292-748 20-687 (902)
36 1r5m_A SIR4-interacting protei 100.0 9.7E-33 3.3E-37 302.1 26.6 347 336-730 42-423 (425)
37 3zwl_B Eukaryotic translation 100.0 1.9E-30 6.5E-35 278.3 40.5 276 422-730 45-344 (369)
38 1erj_A Transcriptional repress 100.0 9.7E-31 3.3E-35 288.8 39.0 267 423-730 78-387 (393)
39 2hes_X YDR267CP; beta-propelle 100.0 7.5E-31 2.6E-35 282.8 36.9 281 447-751 5-305 (330)
40 3frx_A Guanine nucleotide-bind 100.0 1.1E-30 3.7E-35 280.1 36.8 270 446-751 7-296 (319)
41 4gga_A P55CDC, cell division c 100.0 2.2E-30 7.4E-35 288.1 37.8 282 422-745 117-410 (420)
42 2pm9_A Protein WEB1, protein t 100.0 1.1E-32 3.6E-37 302.7 18.9 333 341-730 14-412 (416)
43 1r5m_A SIR4-interacting protei 100.0 7.8E-31 2.7E-35 287.0 33.5 292 420-751 57-404 (425)
44 2xzm_R RACK1; ribosome, transl 100.0 1.6E-30 5.5E-35 281.2 35.3 270 447-751 12-319 (343)
45 1gxr_A ESG1, transducin-like e 100.0 4.6E-30 1.6E-34 272.2 37.4 262 452-750 47-315 (337)
46 1sq9_A Antiviral protein SKI8; 100.0 1.9E-30 6.6E-35 283.2 34.6 299 414-729 19-392 (397)
47 1pgu_A Actin interacting prote 100.0 2.4E-30 8.2E-35 298.4 36.1 378 293-730 120-612 (615)
48 2oaj_A Protein SNI1; WD40 repe 100.0 4.8E-31 1.7E-35 322.4 31.8 406 336-750 14-631 (902)
49 4aez_A CDC20, WD repeat-contai 100.0 2.7E-30 9.2E-35 285.3 34.1 275 422-738 104-388 (401)
50 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-29 4.1E-34 273.6 38.3 282 422-730 21-359 (372)
51 3vl1_A 26S proteasome regulato 100.0 1.2E-30 4.2E-35 287.3 29.7 345 342-731 59-418 (420)
52 2pm7_B Protein transport prote 100.0 7.2E-30 2.5E-34 270.7 33.5 245 451-729 4-282 (297)
53 3v7d_B Cell division control p 100.0 3E-30 1E-34 289.1 32.1 319 334-728 116-459 (464)
54 3k26_A Polycomb protein EED; W 100.0 1.9E-30 6.4E-35 278.5 27.9 273 421-730 34-364 (366)
55 4aow_A Guanine nucleotide-bind 100.0 2.6E-29 8.9E-34 267.6 36.4 271 447-751 29-316 (340)
56 2pm9_A Protein WEB1, protein t 100.0 1.3E-30 4.3E-35 286.1 26.7 272 428-730 42-335 (416)
57 3ei3_B DNA damage-binding prot 100.0 7.2E-30 2.5E-34 278.7 32.3 270 422-731 87-381 (383)
58 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-29 3.9E-34 283.7 34.2 316 334-730 113-440 (445)
59 3v7d_B Cell division control p 100.0 4.3E-29 1.5E-33 279.7 38.2 307 416-750 127-442 (464)
60 4ggc_A P55CDC, cell division c 100.0 3.7E-29 1.3E-33 263.8 35.3 268 423-732 38-315 (318)
61 4h5i_A Guanine nucleotide-exch 100.0 7.5E-31 2.6E-35 287.5 22.8 295 342-729 17-340 (365)
62 3i2n_A WD repeat-containing pr 100.0 3.2E-29 1.1E-33 268.3 34.1 279 420-731 30-352 (357)
63 4e54_B DNA damage-binding prot 100.0 1.4E-30 4.6E-35 291.3 23.7 269 422-730 133-428 (435)
64 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-28 6E-33 257.6 38.2 260 422-730 30-294 (313)
65 3dwl_C Actin-related protein 2 100.0 3.2E-30 1.1E-34 280.2 25.6 275 422-729 24-376 (377)
66 3gre_A Serine/threonine-protei 100.0 6.4E-30 2.2E-34 284.1 27.9 312 363-729 47-437 (437)
67 3odt_A Protein DOA1; ubiquitin 100.0 1E-28 3.5E-33 259.4 34.3 265 446-751 8-276 (313)
68 3i2n_A WD repeat-containing pr 100.0 2.1E-29 7.3E-34 269.7 29.5 270 450-751 12-331 (357)
69 1sq9_A Antiviral protein SKI8; 100.0 2.6E-29 8.9E-34 274.3 30.2 271 449-751 9-364 (397)
70 3vl1_A 26S proteasome regulato 100.0 1.5E-28 5.2E-33 270.6 36.4 283 424-751 71-395 (420)
71 3bg1_A Protein SEC13 homolog; 100.0 6.8E-30 2.3E-34 273.5 23.8 244 451-729 8-290 (316)
72 3ei3_B DNA damage-binding prot 100.0 4.5E-29 1.5E-33 272.4 30.6 270 448-750 65-361 (383)
73 3zwl_B Eukaryotic translation 100.0 5.9E-28 2E-32 258.9 38.0 264 447-751 23-325 (369)
74 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-28 4.5E-33 260.3 30.9 263 451-729 6-334 (351)
75 1yfq_A Cell cycle arrest prote 100.0 4.2E-29 1.4E-33 266.6 27.2 268 452-748 7-301 (342)
76 3gre_A Serine/threonine-protei 100.0 3E-29 1E-33 278.7 26.5 277 449-739 55-368 (437)
77 3mkq_A Coatomer beta'-subunit; 100.0 3.6E-29 1.2E-33 299.7 29.1 332 333-731 7-385 (814)
78 4a11_B DNA excision repair pro 100.0 2.1E-28 7.2E-33 266.5 32.1 309 357-736 22-371 (408)
79 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-28 4.1E-33 271.7 29.8 267 414-751 40-323 (402)
80 3dm0_A Maltose-binding peripla 100.0 3.6E-28 1.2E-32 288.0 35.3 255 450-740 376-642 (694)
81 3jrp_A Fusion protein of prote 100.0 3.4E-28 1.2E-32 262.2 32.0 247 450-729 5-284 (379)
82 1k8k_C P40, ARP2/3 complex 41 100.0 4.1E-28 1.4E-32 261.6 31.4 239 452-730 4-272 (372)
83 3mkq_A Coatomer beta'-subunit; 100.0 3.2E-28 1.1E-32 291.4 33.6 265 449-751 6-280 (814)
84 3k26_A Polycomb protein EED; W 100.0 1.5E-28 5E-33 263.7 26.9 273 452-751 14-345 (366)
85 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.4E-27 1.2E-31 263.6 38.6 284 416-751 124-417 (445)
86 3dwl_C Actin-related protein 2 100.0 4.2E-29 1.4E-33 271.3 22.2 246 452-729 7-278 (377)
87 2j04_B YDR362CP, TAU91; beta p 100.0 7.2E-29 2.5E-33 285.4 25.0 282 423-730 175-515 (524)
88 2pm7_B Protein transport prote 100.0 1.5E-27 5.1E-32 252.9 32.0 232 422-680 22-285 (297)
89 3dw8_B Serine/threonine-protei 100.0 8.4E-28 2.9E-32 266.6 29.8 290 421-729 40-443 (447)
90 1p22_A F-BOX/WD-repeat protein 100.0 3.8E-27 1.3E-31 262.9 33.5 277 412-730 134-412 (435)
91 3bg1_A Protein SEC13 homolog; 100.0 1.9E-27 6.4E-32 254.6 25.7 232 422-679 26-292 (316)
92 3mmy_A MRNA export factor; mRN 100.0 9.2E-27 3.1E-31 249.5 30.2 269 446-751 29-325 (368)
93 4e54_B DNA damage-binding prot 100.0 1.9E-27 6.5E-32 265.8 25.1 217 451-742 114-339 (435)
94 1yfq_A Cell cycle arrest prote 100.0 1.6E-26 5.5E-31 246.5 31.0 272 422-729 24-321 (342)
95 4aez_A CDC20, WD repeat-contai 100.0 1.5E-26 5.1E-31 255.3 31.0 270 351-686 106-386 (401)
96 3dw8_B Serine/threonine-protei 100.0 5.7E-27 1.9E-31 259.9 27.7 269 454-741 26-383 (447)
97 4gga_A P55CDC, cell division c 100.0 3E-26 1E-30 254.7 33.4 270 355-684 122-399 (420)
98 4a11_B DNA excision repair pro 100.0 4.9E-26 1.7E-30 247.8 34.3 287 431-751 23-344 (408)
99 2j04_B YDR362CP, TAU91; beta p 100.0 2.7E-28 9.1E-33 280.7 13.8 238 470-730 175-426 (524)
100 2aq5_A Coronin-1A; WD40 repeat 100.0 1.9E-26 6.7E-31 254.0 28.1 270 351-729 50-339 (402)
101 1l0q_A Surface layer protein; 99.9 5.3E-25 1.8E-29 240.2 38.3 275 422-743 3-288 (391)
102 3jrp_A Fusion protein of prote 99.9 5.7E-26 2E-30 244.7 29.9 231 422-681 24-288 (379)
103 4h5i_A Guanine nucleotide-exch 99.9 1.6E-26 5.4E-31 253.1 25.9 274 456-751 14-322 (365)
104 3mmy_A MRNA export factor; mRN 99.9 1.1E-25 3.6E-30 241.2 31.5 263 422-729 55-343 (368)
105 2xyi_A Probable histone-bindin 99.9 6.6E-26 2.2E-30 253.1 29.4 260 450-730 122-408 (430)
106 4gq1_A NUP37; propeller, trans 99.9 4.9E-27 1.7E-31 259.5 19.3 229 421-729 101-386 (393)
107 2j04_A TAU60, YPL007P, hypothe 99.9 5.9E-28 2E-32 275.0 10.9 321 341-752 17-373 (588)
108 1p22_A F-BOX/WD-repeat protein 99.9 4E-25 1.4E-29 246.6 33.7 247 453-749 130-393 (435)
109 3f3f_A Nucleoporin SEH1; struc 99.9 3.6E-25 1.2E-29 233.8 30.6 254 422-686 24-343 (351)
110 3jro_A Fusion protein of prote 99.9 6.2E-26 2.1E-30 272.0 26.6 248 450-730 3-283 (753)
111 4ggc_A P55CDC, cell division c 99.9 7.9E-25 2.7E-29 230.6 31.6 277 345-681 31-316 (318)
112 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.2E-24 4.3E-29 243.8 33.4 240 454-729 100-388 (450)
113 3lrv_A PRE-mRNA-splicing facto 99.9 1.6E-25 5.5E-30 241.7 25.2 229 421-729 48-289 (343)
114 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1E-24 3.5E-29 244.5 31.9 267 457-751 5-364 (450)
115 3bws_A Protein LP49; two-domai 99.9 2.4E-24 8.1E-29 238.4 33.4 270 420-730 133-430 (433)
116 3lrv_A PRE-mRNA-splicing facto 99.9 1.9E-25 6.7E-30 241.0 22.5 259 351-729 51-330 (343)
117 2w18_A PALB2, fancn, partner a 99.9 1.9E-24 6.7E-29 232.5 29.1 242 425-729 57-354 (356)
118 2j04_A TAU60, YPL007P, hypothe 99.9 6.9E-25 2.4E-29 249.8 24.4 239 455-749 14-273 (588)
119 3vu4_A KMHSV2; beta-propeller 99.9 4.3E-24 1.5E-28 232.6 29.8 261 423-729 33-333 (355)
120 4gq1_A NUP37; propeller, trans 99.9 1.7E-24 5.8E-29 239.1 25.7 225 462-751 95-369 (393)
121 1l0q_A Surface layer protein; 99.9 1.5E-22 5.2E-27 220.7 36.8 270 351-688 5-283 (391)
122 3bws_A Protein LP49; two-domai 99.9 5.1E-23 1.7E-27 227.6 32.8 285 426-750 94-409 (433)
123 3vu4_A KMHSV2; beta-propeller 99.9 1.3E-23 4.5E-28 228.7 27.3 233 450-730 13-269 (355)
124 2xyi_A Probable histone-bindin 99.9 2E-23 6.8E-28 233.0 29.0 242 421-682 141-412 (430)
125 3jro_A Fusion protein of prote 99.9 1.6E-23 5.4E-28 251.1 24.5 229 423-680 23-285 (753)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.8E-22 6.1E-27 225.0 30.1 276 432-752 94-408 (415)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.6E-21 9E-26 215.5 29.9 237 431-712 159-409 (415)
128 1nir_A Nitrite reductase; hemo 99.9 2.1E-20 7.1E-25 215.9 31.1 326 351-741 152-525 (543)
129 2ojh_A Uncharacterized protein 99.9 5.7E-20 1.9E-24 189.8 25.5 255 426-722 17-292 (297)
130 2w18_A PALB2, fancn, partner a 99.9 1.3E-19 4.4E-24 195.1 27.2 263 459-751 42-336 (356)
131 3u4y_A Uncharacterized protein 99.8 6.4E-19 2.2E-23 187.4 31.9 286 419-740 8-313 (331)
132 1k32_A Tricorn protease; prote 99.8 3.4E-20 1.2E-24 229.9 22.6 372 318-750 37-480 (1045)
133 1nir_A Nitrite reductase; hemo 99.8 1.2E-18 3.9E-23 201.3 30.2 281 422-750 150-487 (543)
134 1ri6_A Putative isomerase YBHE 99.8 3.8E-18 1.3E-22 181.1 31.0 287 424-751 8-332 (343)
135 1pby_B Quinohemoprotein amine 99.8 3.8E-19 1.3E-23 188.2 21.8 277 422-743 2-323 (337)
136 2ecf_A Dipeptidyl peptidase IV 99.8 1.3E-18 4.4E-23 206.6 28.1 291 414-750 42-433 (741)
137 1xfd_A DIP, dipeptidyl aminope 99.8 2.8E-18 9.7E-23 202.9 25.8 365 324-722 2-431 (723)
138 2ecf_A Dipeptidyl peptidase IV 99.8 2.2E-18 7.6E-23 204.6 22.4 261 456-750 36-388 (741)
139 1k32_A Tricorn protease; prote 99.8 8.8E-18 3E-22 208.2 27.6 350 333-750 197-616 (1045)
140 3o4h_A Acylamino-acid-releasin 99.8 6.7E-18 2.3E-22 195.4 24.1 249 455-749 20-290 (582)
141 3vgz_A Uncharacterized protein 99.8 6.4E-17 2.2E-21 172.8 29.8 254 455-750 39-322 (353)
142 1xfd_A DIP, dipeptidyl aminope 99.8 7.4E-18 2.5E-22 199.3 23.0 281 428-751 34-419 (723)
143 3vgz_A Uncharacterized protein 99.8 2.3E-16 7.7E-21 168.5 32.4 267 414-722 46-334 (353)
144 2oit_A Nucleoporin 214KDA; NH2 99.8 2E-17 6.9E-22 185.5 24.3 168 454-681 90-279 (434)
145 3u4y_A Uncharacterized protein 99.8 2E-16 6.8E-21 168.1 28.3 275 351-685 13-309 (331)
146 2oit_A Nucleoporin 214KDA; NH2 99.7 1.1E-17 3.9E-22 187.6 17.7 163 565-730 90-276 (434)
147 2z3z_A Dipeptidyl aminopeptida 99.7 5.4E-17 1.8E-21 191.7 24.3 288 425-751 39-410 (706)
148 2z3z_A Dipeptidyl aminopeptida 99.7 4.2E-16 1.4E-20 184.1 30.4 282 430-730 100-433 (706)
149 2ojh_A Uncharacterized protein 99.7 5.4E-17 1.9E-21 167.3 19.7 252 351-671 15-293 (297)
150 1ri6_A Putative isomerase YBHE 99.7 3.7E-16 1.3E-20 165.7 26.2 254 417-712 46-334 (343)
151 1jmx_B Amine dehydrogenase; ox 99.7 7.2E-17 2.5E-21 171.8 20.7 236 461-740 4-335 (349)
152 3scy_A Hypothetical bacterial 99.7 2E-15 6.7E-20 163.2 32.3 296 428-750 24-360 (361)
153 1pby_B Quinohemoprotein amine 99.7 7.1E-17 2.4E-21 170.7 19.9 273 351-688 4-318 (337)
154 3o4h_A Acylamino-acid-releasin 99.7 2E-16 6.8E-21 183.0 22.3 260 415-730 28-313 (582)
155 3hfq_A Uncharacterized protein 99.7 2.5E-15 8.7E-20 161.2 29.4 244 416-729 47-314 (347)
156 3hfq_A Uncharacterized protein 99.7 2.5E-15 8.7E-20 161.2 25.7 247 430-750 15-294 (347)
157 1z68_A Fibroblast activation p 99.7 2.4E-16 8.2E-21 186.7 19.1 364 326-738 3-451 (719)
158 1jmx_B Amine dehydrogenase; ox 99.7 2.2E-15 7.5E-20 160.3 23.0 249 419-688 9-333 (349)
159 1jof_A Carboxy-CIS,CIS-muconat 99.7 4.5E-14 1.6E-18 153.6 31.9 252 455-729 38-338 (365)
160 3pe7_A Oligogalacturonate lyas 99.7 8.4E-15 2.9E-19 159.1 24.6 289 416-729 43-379 (388)
161 3scy_A Hypothetical bacterial 99.6 1.4E-13 4.7E-18 148.6 32.6 260 429-709 73-360 (361)
162 1z68_A Fibroblast activation p 99.6 2.3E-15 7.8E-20 178.3 17.6 294 415-750 22-418 (719)
163 3fvz_A Peptidyl-glycine alpha- 99.6 2.1E-13 7.1E-18 146.4 28.8 238 456-730 23-320 (329)
164 4a5s_A Dipeptidyl peptidase 4 99.6 2.2E-14 7.6E-19 171.2 23.2 250 457-729 17-350 (740)
165 1q7f_A NHL, brain tumor CG1071 99.6 9.9E-13 3.4E-17 137.1 31.7 240 454-730 27-278 (286)
166 3c5m_A Oligogalacturonate lyas 99.6 1.3E-13 4.4E-18 149.4 24.3 275 418-729 45-379 (396)
167 3pe7_A Oligogalacturonate lyas 99.6 1E-13 3.5E-18 150.5 21.5 255 452-742 26-340 (388)
168 3azo_A Aminopeptidase; POP fam 99.6 9E-14 3.1E-18 162.8 22.1 270 451-747 18-341 (662)
169 2oiz_A Aromatic amine dehydrog 99.5 8.8E-13 3E-17 143.9 24.8 276 429-751 29-357 (361)
170 4a5s_A Dipeptidyl peptidase 4 99.5 5.1E-13 1.7E-17 159.4 24.6 267 414-721 22-383 (740)
171 2gop_A Trilobed protease; beta 99.5 6.2E-12 2.1E-16 134.3 26.8 270 430-743 42-342 (347)
172 1jof_A Carboxy-CIS,CIS-muconat 99.5 2.1E-12 7.1E-17 140.4 23.3 180 570-751 85-316 (365)
173 1q7f_A NHL, brain tumor CG1071 99.5 2E-11 6.9E-16 127.1 29.7 227 422-681 42-281 (286)
174 3dsm_A Uncharacterized protein 99.5 1.1E-11 3.6E-16 133.3 26.2 270 428-738 14-309 (328)
175 3azo_A Aminopeptidase; POP fam 99.4 8.3E-12 2.8E-16 146.1 26.3 271 428-729 44-366 (662)
176 2oiz_A Aromatic amine dehydrog 99.4 3.6E-12 1.2E-16 139.0 21.1 242 429-713 79-360 (361)
177 3c5m_A Oligogalacturonate lyas 99.4 8.2E-13 2.8E-17 143.1 14.9 245 457-742 36-340 (396)
178 3fvz_A Peptidyl-glycine alpha- 99.4 2E-10 6.9E-15 123.0 32.3 222 430-680 68-322 (329)
179 2dg1_A DRP35, lactonase; beta 99.4 1.9E-10 6.5E-15 122.2 30.6 238 451-722 39-300 (333)
180 2dg1_A DRP35, lactonase; beta 99.4 1.6E-11 5.5E-16 130.6 22.0 258 457-749 6-287 (333)
181 2xdw_A Prolyl endopeptidase; a 99.4 1.7E-10 5.7E-15 136.9 32.7 251 454-730 122-412 (710)
182 3e5z_A Putative gluconolactona 99.4 9.3E-11 3.2E-15 122.9 26.2 233 450-729 21-283 (296)
183 2gop_A Trilobed protease; beta 99.4 7.7E-11 2.6E-15 125.7 24.1 238 457-750 15-310 (347)
184 1rwi_B Serine/threonine-protei 99.4 1.2E-10 4.2E-15 119.6 24.6 233 458-730 25-262 (270)
185 3e5z_A Putative gluconolactona 99.3 3.5E-10 1.2E-14 118.5 27.5 249 416-685 35-291 (296)
186 2bkl_A Prolyl endopeptidase; m 99.3 5.2E-11 1.8E-15 141.0 23.0 250 454-730 118-395 (695)
187 2z2n_A Virginiamycin B lyase; 99.3 9E-09 3.1E-13 106.5 36.7 256 452-749 10-274 (299)
188 3no2_A Uncharacterized protein 99.3 4.3E-10 1.5E-14 118.1 25.6 245 467-748 4-272 (276)
189 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.2E-09 4E-14 114.6 27.6 240 454-730 15-297 (314)
190 3no2_A Uncharacterized protein 99.3 9E-10 3.1E-14 115.6 26.1 229 422-687 6-259 (276)
191 2z2n_A Virginiamycin B lyase; 99.3 4.9E-08 1.7E-12 100.9 38.8 259 423-729 28-292 (299)
192 1qks_A Cytochrome CD1 nitrite 99.3 1E-08 3.4E-13 118.6 35.7 284 424-740 211-548 (567)
193 1qks_A Cytochrome CD1 nitrite 99.2 5.4E-09 1.8E-13 120.9 32.1 238 422-740 168-438 (567)
194 3dsm_A Uncharacterized protein 99.2 1.9E-09 6.6E-14 115.5 24.1 233 421-688 54-309 (328)
195 1xip_A Nucleoporin NUP159; bet 99.2 3.2E-10 1.1E-14 124.8 17.6 141 566-718 87-230 (388)
196 2qc5_A Streptogramin B lactona 99.2 1.6E-07 5.6E-12 96.9 35.8 260 422-729 32-297 (300)
197 1rwi_B Serine/threonine-protei 99.1 4.2E-09 1.4E-13 107.9 23.2 227 423-683 37-267 (270)
198 2mad_H Methylamine dehydrogena 99.1 1.1E-07 3.8E-12 104.1 35.8 260 432-737 48-357 (373)
199 3g4e_A Regucalcin; six bladed 99.1 2.3E-08 7.7E-13 105.3 28.3 221 417-721 21-262 (297)
200 2qc5_A Streptogramin B lactona 99.1 1.9E-07 6.6E-12 96.4 34.8 237 453-730 16-258 (300)
201 2xdw_A Prolyl endopeptidase; a 99.1 6.3E-09 2.1E-13 123.3 26.2 220 502-749 123-387 (710)
202 1yr2_A Prolyl oligopeptidase; 99.1 9.1E-09 3.1E-13 122.7 27.2 250 454-730 160-439 (741)
203 1xip_A Nucleoporin NUP159; bet 99.1 8.6E-09 3E-13 113.3 23.4 232 418-730 46-310 (388)
204 3hrp_A Uncharacterized protein 99.1 2.5E-08 8.7E-13 110.6 27.4 242 457-729 131-407 (409)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 3.2E-08 1.1E-12 103.5 26.7 241 427-681 42-300 (314)
206 2bkl_A Prolyl endopeptidase; m 99.1 4E-09 1.4E-13 124.8 20.8 239 466-740 77-360 (695)
207 3g4e_A Regucalcin; six bladed 99.0 1.2E-07 4.1E-12 99.7 29.0 176 568-750 54-249 (297)
208 2ghs_A AGR_C_1268P; regucalcin 99.0 1.4E-07 4.7E-12 100.9 29.7 173 569-750 91-279 (326)
209 2ghs_A AGR_C_1268P; regucalcin 99.0 1.8E-07 6.1E-12 100.0 29.1 219 417-722 57-293 (326)
210 1yr2_A Prolyl oligopeptidase; 99.0 4E-08 1.4E-12 117.1 24.9 253 466-749 116-414 (741)
211 3sjl_D Methylamine dehydrogena 99.0 1.1E-07 3.7E-12 104.3 25.9 267 430-740 58-373 (386)
212 3dr2_A Exported gluconolactona 98.9 6.3E-08 2.2E-12 102.2 21.5 229 452-727 40-302 (305)
213 3iuj_A Prolyl endopeptidase; h 98.9 8.4E-08 2.9E-12 113.5 23.4 244 454-729 126-402 (693)
214 2mad_H Methylamine dehydrogena 98.9 1.4E-06 4.7E-11 95.4 30.0 216 429-686 95-356 (373)
215 3c75_H MADH, methylamine dehyd 98.8 2.5E-07 8.6E-12 102.9 23.7 263 431-737 99-409 (426)
216 3dr2_A Exported gluconolactona 98.8 3.6E-07 1.2E-11 96.3 23.7 234 417-672 53-299 (305)
217 2qe8_A Uncharacterized protein 98.8 5.9E-07 2E-11 96.6 23.9 182 565-749 64-298 (343)
218 3sjl_D Methylamine dehydrogena 98.7 1.6E-07 5.6E-12 102.9 17.7 228 429-688 107-371 (386)
219 3hrp_A Uncharacterized protein 98.7 7.4E-06 2.5E-10 90.6 30.2 223 422-678 143-408 (409)
220 1yiq_A Quinohemoprotein alcoho 98.7 2.3E-06 7.9E-11 101.2 26.0 157 572-740 239-515 (689)
221 1mda_H Methylamine dehydrogena 98.7 8E-07 2.7E-11 97.1 20.3 261 432-742 47-358 (368)
222 1kb0_A Quinohemoprotein alcoho 98.7 1.7E-06 5.8E-11 102.2 24.2 158 572-741 247-518 (677)
223 3iuj_A Prolyl endopeptidase; h 98.6 2.1E-06 7.3E-11 101.5 23.6 239 415-684 135-409 (693)
224 3q7m_A Lipoprotein YFGL, BAMB; 98.6 3.7E-05 1.3E-09 82.9 31.2 274 422-740 54-347 (376)
225 2iwa_A Glutamine cyclotransfer 98.6 1.1E-05 3.8E-10 83.9 25.5 202 455-729 17-234 (266)
226 1yiq_A Quinohemoprotein alcoho 98.6 2.7E-06 9.3E-11 100.6 23.3 133 580-721 321-538 (689)
227 3hxj_A Pyrrolo-quinoline quino 98.6 7E-07 2.4E-11 93.9 15.8 261 421-740 30-293 (330)
228 1kb0_A Quinohemoprotein alcoho 98.6 4E-06 1.4E-10 99.0 23.1 134 579-721 328-540 (677)
229 1npe_A Nidogen, entactin; glyc 98.5 5.6E-05 1.9E-09 77.6 29.0 243 431-713 10-263 (267)
230 3nol_A Glutamine cyclotransfer 98.5 2.1E-05 7E-10 81.3 24.7 192 454-720 38-243 (262)
231 3q7m_A Lipoprotein YFGL, BAMB; 98.5 1.5E-05 5.1E-10 86.1 24.4 256 422-729 104-375 (376)
232 2qe8_A Uncharacterized protein 98.5 1.6E-06 5.5E-11 93.1 16.5 203 454-729 64-318 (343)
233 3c75_H MADH, methylamine dehyd 98.4 3.6E-06 1.2E-10 93.6 17.6 228 429-687 147-409 (426)
234 2hz6_A Endoplasmic reticulum t 98.4 5.6E-08 1.9E-12 106.1 2.3 187 467-687 8-199 (369)
235 2ece_A 462AA long hypothetical 98.4 3.2E-05 1.1E-09 85.8 24.3 231 418-720 93-399 (462)
236 2ece_A 462AA long hypothetical 98.4 2.5E-05 8.5E-10 86.6 23.3 159 571-730 141-350 (462)
237 3hxj_A Pyrrolo-quinoline quino 98.4 1E-05 3.6E-10 84.9 19.4 251 421-730 70-322 (330)
238 4a2l_A BT_4663, two-component 98.3 0.0012 4E-08 79.1 37.5 270 421-730 183-478 (795)
239 3nok_A Glutaminyl cyclase; bet 98.3 5.4E-05 1.9E-09 78.2 21.2 187 458-719 56-253 (268)
240 3mbr_X Glutamine cyclotransfer 98.3 0.00019 6.6E-09 73.3 24.7 136 580-719 77-222 (243)
241 4a2l_A BT_4663, two-component 98.3 0.002 6.7E-08 77.1 37.3 283 419-729 223-523 (795)
242 1mda_H Methylamine dehydrogena 98.2 2.6E-05 8.8E-10 85.1 17.6 226 428-688 93-354 (368)
243 2fp8_A Strictosidine synthase; 98.2 0.00016 5.6E-09 76.4 23.5 238 457-730 19-311 (322)
244 2hz6_A Endoplasmic reticulum t 98.2 9.5E-07 3.3E-11 96.3 5.4 218 422-682 10-238 (369)
245 1npe_A Nidogen, entactin; glyc 98.2 0.00091 3.1E-08 68.4 27.6 170 568-750 79-259 (267)
246 1kv9_A Type II quinohemoprotei 98.2 0.00061 2.1E-08 80.1 29.5 158 572-741 234-499 (668)
247 2iwa_A Glutamine cyclotransfer 98.2 0.0001 3.5E-09 76.6 19.7 161 569-738 22-189 (266)
248 3nol_A Glutamine cyclotransfer 98.0 0.00018 6.2E-09 74.2 18.6 173 570-751 45-234 (262)
249 3v9f_A Two-component system se 98.0 0.01 3.5E-07 70.7 36.7 288 417-730 217-522 (781)
250 1fwx_A Nitrous oxide reductase 98.0 6.7E-05 2.3E-09 85.9 16.1 219 419-680 100-361 (595)
251 3v9f_A Two-component system se 98.0 0.0035 1.2E-07 74.7 31.9 283 415-730 262-566 (781)
252 3nok_A Glutaminyl cyclase; bet 98.0 0.00012 4.1E-09 75.6 16.3 159 569-739 56-219 (268)
253 1fwx_A Nitrous oxide reductase 98.0 0.00022 7.7E-09 81.6 19.2 153 588-742 175-383 (595)
254 2ad6_A Methanol dehydrogenase 97.9 0.0013 4.5E-08 75.8 25.7 108 580-688 318-502 (571)
255 2ad6_A Methanol dehydrogenase 97.9 0.0023 7.8E-08 73.8 27.3 140 589-740 273-504 (571)
256 3mbr_X Glutamine cyclotransfer 97.9 0.00082 2.8E-08 68.7 19.7 175 568-751 21-213 (243)
257 2p4o_A Hypothetical protein; p 97.8 0.0094 3.2E-07 62.3 27.7 169 570-750 74-263 (306)
258 1w6s_A Methanol dehydrogenase 97.8 0.0023 7.8E-08 74.2 24.8 155 574-740 247-513 (599)
259 1kv9_A Type II quinohemoprotei 97.8 0.0034 1.2E-07 73.7 26.2 108 580-688 316-496 (668)
260 2fp8_A Strictosidine synthase; 97.7 0.0048 1.7E-07 64.9 23.3 246 422-680 31-313 (322)
261 1flg_A Protein (quinoprotein e 97.7 0.0096 3.3E-07 68.7 27.6 142 588-741 291-527 (582)
262 3p5b_L Low density lipoprotein 97.7 0.094 3.2E-06 57.3 33.9 170 569-748 160-338 (400)
263 3v65_B Low-density lipoprotein 97.7 0.027 9.2E-07 61.3 29.1 158 572-740 163-328 (386)
264 1k3i_A Galactose oxidase precu 97.6 0.01 3.5E-07 69.3 26.6 259 432-721 220-530 (656)
265 3v64_C Agrin; beta propeller, 97.6 0.069 2.4E-06 57.2 30.9 158 571-739 119-284 (349)
266 1w6s_A Methanol dehydrogenase 97.6 0.0052 1.8E-07 71.2 23.4 86 628-721 451-536 (599)
267 1ijq_A LDL receptor, low-densi 97.6 0.11 3.6E-06 54.8 32.1 160 570-739 79-247 (316)
268 1flg_A Protein (quinoprotein e 97.5 0.0037 1.3E-07 72.2 21.1 85 629-721 465-549 (582)
269 2xe4_A Oligopeptidase B; hydro 97.4 0.0031 1E-07 75.1 19.2 142 573-728 226-394 (751)
270 3qqz_A Putative uncharacterize 97.4 0.018 6.3E-07 59.1 22.5 209 450-678 20-251 (255)
271 3v64_C Agrin; beta propeller, 97.4 0.057 1.9E-06 57.8 26.9 154 567-729 72-231 (349)
272 3amr_A 3-phytase; beta-propell 97.4 0.018 6.1E-07 61.8 22.4 177 551-738 53-272 (355)
273 3v65_B Low-density lipoprotein 97.4 0.031 1.1E-06 60.8 24.6 155 566-729 114-274 (386)
274 3tc9_A Hypothetical hydrolase; 97.3 0.0037 1.3E-07 69.4 17.1 151 569-729 138-298 (430)
275 3m0c_C LDL receptor, low-densi 97.3 0.11 3.7E-06 62.1 30.7 159 570-738 473-640 (791)
276 2xbg_A YCF48-like protein; pho 97.3 0.18 6.3E-06 53.1 29.3 170 568-749 122-300 (327)
277 3qqz_A Putative uncharacterize 97.3 0.018 6.2E-07 59.2 20.1 175 562-738 21-211 (255)
278 3sov_A LRP-6, low-density lipo 97.3 0.2 6.9E-06 52.9 28.8 157 571-739 82-247 (318)
279 1ijq_A LDL receptor, low-densi 97.2 0.065 2.2E-06 56.4 24.7 154 567-729 29-192 (316)
280 2xbg_A YCF48-like protein; pho 97.2 0.28 9.7E-06 51.7 30.8 151 566-729 161-319 (327)
281 2p4o_A Hypothetical protein; p 97.2 0.038 1.3E-06 57.6 22.7 166 559-729 24-195 (306)
282 3amr_A 3-phytase; beta-propell 97.2 0.073 2.5E-06 57.0 24.2 120 568-688 128-272 (355)
283 3p5b_L Low density lipoprotein 97.2 0.12 4E-06 56.5 26.8 158 563-729 107-274 (400)
284 4hw6_A Hypothetical protein, I 97.0 0.05 1.7E-06 60.3 21.8 245 458-729 140-430 (433)
285 2xe4_A Oligopeptidase B; hydro 96.9 0.053 1.8E-06 64.4 22.8 238 414-683 179-461 (751)
286 3tc9_A Hypothetical hydrolase; 96.9 0.12 4.1E-06 57.0 24.2 246 458-729 138-427 (430)
287 2p9w_A MAL S 1 allergenic prot 96.9 0.042 1.4E-06 58.4 18.9 163 564-732 9-215 (334)
288 3ei3_A DNA damage-binding prot 96.8 0.62 2.1E-05 58.0 31.5 277 430-729 531-910 (1158)
289 3m0c_C LDL receptor, low-densi 96.8 0.23 7.8E-06 59.3 26.2 158 563-729 419-586 (791)
290 4hw6_A Hypothetical protein, I 96.7 0.016 5.4E-07 64.3 15.0 153 569-729 140-301 (433)
291 3sov_A LRP-6, low-density lipo 96.6 0.29 9.8E-06 51.7 23.2 152 569-729 36-194 (318)
292 2ism_A Putative oxidoreductase 96.5 0.39 1.3E-05 51.3 23.8 237 457-719 31-332 (352)
293 1k3i_A Galactose oxidase precu 96.4 0.029 9.8E-07 65.5 15.2 239 461-730 190-495 (656)
294 4a0p_A LRP6, LRP-6, low-densit 96.4 1.8 6E-05 50.2 30.2 221 429-684 13-241 (628)
295 2p9w_A MAL S 1 allergenic prot 96.4 0.39 1.3E-05 51.0 22.3 93 587-680 99-215 (334)
296 1n7d_A LDL receptor, low-densi 96.4 0.019 6.6E-07 67.7 13.1 120 568-688 496-622 (699)
297 4a0p_A LRP6, LRP-6, low-densit 96.3 2.2 7.5E-05 49.4 29.9 158 569-739 81-246 (628)
298 3kya_A Putative phosphatase; s 96.0 0.13 4.5E-06 57.8 16.7 160 569-729 140-338 (496)
299 3kya_A Putative phosphatase; s 95.9 1.3 4.6E-05 49.6 24.3 256 458-729 140-472 (496)
300 3a9g_A Putative uncharacterize 95.8 2.6 8.8E-05 44.9 25.7 234 456-719 28-329 (354)
301 2ism_A Putative oxidoreductase 95.7 0.94 3.2E-05 48.3 21.6 61 606-668 266-333 (352)
302 2g8s_A Glucose/sorbosone dehyd 95.6 2.1 7.1E-05 45.6 23.9 59 649-713 270-335 (353)
303 3sre_A PON1, serum paraoxonase 95.4 0.98 3.3E-05 48.5 20.1 148 569-729 51-249 (355)
304 3s94_A LRP-6, low-density lipo 95.2 1.8 6.1E-05 50.1 23.0 223 429-684 16-247 (619)
305 1n7d_A LDL receptor, low-densi 95.1 0.029 1E-06 66.1 7.8 153 568-729 406-568 (699)
306 3s94_A LRP-6, low-density lipo 94.6 8.5 0.00029 44.3 31.9 153 568-729 349-507 (619)
307 3sre_A PON1, serum paraoxonase 94.2 7.1 0.00024 41.7 24.2 81 598-679 211-297 (355)
308 3pbp_A Nucleoporin NUP82; beta 94.2 0.62 2.1E-05 51.1 14.6 140 586-728 39-208 (452)
309 2xzh_A Clathrin heavy chain 1; 93.8 8 0.00027 41.0 27.6 232 430-686 86-338 (365)
310 3ott_A Two-component system se 93.1 17 0.00057 42.5 33.2 275 418-729 153-445 (758)
311 1cru_A Protein (soluble quinop 92.9 6.3 0.00021 43.5 20.7 31 456-486 26-56 (454)
312 1bpo_A Protein (clathrin); cla 92.9 13 0.00045 40.8 28.7 231 430-685 85-336 (494)
313 3a9g_A Putative uncharacterize 92.2 13 0.00046 39.2 25.1 99 570-668 199-330 (354)
314 3pbp_A Nucleoporin NUP82; beta 92.0 3.5 0.00012 45.2 16.4 110 619-730 31-156 (452)
315 1tl2_A L10, protein (tachylect 92.0 0.38 1.3E-05 48.2 8.0 136 580-726 6-157 (236)
316 1tl2_A L10, protein (tachylect 91.9 0.43 1.5E-05 47.7 8.4 102 569-676 42-159 (236)
317 1cru_A Protein (soluble quinop 91.2 11 0.00038 41.5 20.1 101 567-668 26-162 (454)
318 3ei3_A DNA damage-binding prot 90.8 39 0.0013 41.9 34.0 130 588-729 492-633 (1158)
319 3ott_A Two-component system se 90.4 31 0.0011 40.1 32.5 271 417-729 69-349 (758)
320 2g8s_A Glucose/sorbosone dehyd 90.0 21 0.00072 37.6 24.0 64 604-667 267-340 (353)
321 3das_A Putative oxidoreductase 89.4 24 0.00083 37.4 26.3 33 455-487 30-62 (347)
322 2xzh_A Clathrin heavy chain 1; 89.1 25 0.00087 37.2 25.0 220 428-688 46-298 (365)
323 4asc_A Kelch repeat and BTB do 87.2 28 0.00095 35.4 19.3 95 588-686 117-227 (315)
324 2vpj_A Kelch-like protein 12; 87.1 17 0.0006 36.6 16.8 94 588-685 175-283 (301)
325 2vpj_A Kelch-like protein 12; 85.3 11 0.00036 38.3 13.9 138 579-730 114-276 (301)
326 3ii7_A Kelch-like protein 7; p 83.7 20 0.00067 36.4 15.2 139 578-730 102-270 (306)
327 2xn4_A Kelch-like protein 2; s 82.5 7.7 0.00026 39.4 11.5 139 578-730 109-274 (302)
328 2be1_A Serine/threonine-protei 82.4 1 3.5E-05 48.0 4.7 112 578-689 10-139 (339)
329 3l6v_A GYRA, DNA gyrase subuni 81.3 61 0.0021 34.6 22.8 151 577-729 112-313 (370)
330 3das_A Putative oxidoreductase 81.2 59 0.002 34.3 25.5 247 414-667 37-325 (347)
331 2be1_A Serine/threonine-protei 80.6 61 0.0021 34.1 20.0 95 585-681 64-184 (339)
332 4gq2_M Nucleoporin NUP120; bet 79.5 59 0.002 39.3 19.4 37 609-646 237-273 (950)
333 1xi4_A Clathrin heavy chain; a 79.2 55 0.0019 41.3 18.6 231 430-685 85-336 (1630)
334 1suu_A DNA gyrase subunit A; t 78.5 66 0.0023 33.3 24.7 104 577-681 113-232 (312)
335 1bpo_A Protein (clathrin); cla 77.8 89 0.003 34.4 27.3 190 551-745 89-304 (494)
336 2wg3_C Hedgehog-interacting pr 77.4 90 0.0031 34.3 28.1 30 457-486 14-44 (463)
337 1zi0_A DNA gyrase subunit A; b 77.3 70 0.0024 33.0 22.3 151 577-729 108-274 (307)
338 3uc1_A DNA gyrase subunit A; D 76.3 78 0.0027 33.0 21.1 150 578-729 109-276 (327)
339 2xn4_A Kelch-like protein 2; s 74.3 27 0.00094 35.1 12.6 139 578-730 62-227 (302)
340 3no0_A DNA gyrase subunit A; D 71.7 90 0.0031 31.6 15.9 148 577-729 79-243 (276)
341 2uvk_A YJHT; unknown function, 71.1 97 0.0033 31.8 19.1 96 588-685 168-299 (357)
342 3b7f_A Glycosyl hydrolase, BNR 70.4 91 0.0031 32.8 16.2 159 568-729 55-259 (394)
343 3ii7_A Kelch-like protein 7; p 70.2 44 0.0015 33.6 13.1 105 578-686 56-184 (306)
344 1zgk_A Kelch-like ECH-associat 69.5 28 0.00096 35.3 11.4 95 588-686 137-246 (308)
345 2woz_A Kelch repeat and BTB do 69.5 54 0.0019 33.2 13.7 104 578-685 110-236 (318)
346 1xi4_A Clathrin heavy chain; a 67.8 83 0.0028 39.8 16.3 194 464-688 73-297 (1630)
347 4asc_A Kelch repeat and BTB do 67.3 54 0.0018 33.2 13.1 127 590-730 69-219 (315)
348 1zgk_A Kelch-like ECH-associat 66.9 41 0.0014 34.0 12.1 129 588-730 90-238 (308)
349 4gq2_M Nucleoporin NUP120; bet 65.4 52 0.0018 39.8 14.1 39 650-688 236-274 (950)
350 3b7f_A Glycosyl hydrolase, BNR 64.8 1.4E+02 0.0048 31.2 29.4 180 568-750 177-391 (394)
351 3s25_A Hypothetical 7-bladed b 63.6 1.4E+02 0.0046 30.6 17.7 102 574-683 110-219 (302)
352 3sbq_A Nitrous-oxide reductase 63.5 7.4 0.00025 44.1 5.6 91 589-680 299-408 (638)
353 2woz_A Kelch repeat and BTB do 61.2 65 0.0022 32.6 12.3 94 590-686 80-190 (318)
354 2uvk_A YJHT; unknown function, 54.5 1.4E+02 0.0048 30.5 13.7 94 588-684 86-232 (357)
355 2zwa_A Leucine carboxyl methyl 52.8 1.1E+02 0.0037 35.5 13.5 104 578-682 452-579 (695)
356 3uc1_A DNA gyrase subunit A; D 51.2 2.3E+02 0.0078 29.4 23.8 153 569-723 147-321 (327)
357 1wp5_A Topoisomerase IV; broke 48.1 2.5E+02 0.0086 29.0 22.0 150 578-729 106-274 (323)
358 3sbq_A Nitrous-oxide reductase 47.0 56 0.0019 37.1 9.1 114 568-682 323-480 (638)
359 2zwa_A Leucine carboxyl methyl 46.3 1.6E+02 0.0054 34.0 13.5 147 578-729 398-574 (695)
360 3no0_A DNA gyrase subunit A; D 45.4 2.5E+02 0.0086 28.2 20.9 101 579-680 128-246 (276)
361 3mvd_K Regulator of chromosome 43.6 3.2E+02 0.011 28.9 18.1 113 608-729 75-204 (423)
362 2wg3_C Hedgehog-interacting pr 43.4 3.6E+02 0.012 29.4 25.0 68 600-668 266-354 (463)
363 3q6k_A 43.2 kDa salivary prote 42.7 3.4E+02 0.011 28.9 18.3 142 589-732 124-306 (381)
364 3qhy_B Beta-lactamase inhibito 38.1 3.2E+02 0.011 27.3 18.4 140 568-729 102-243 (282)
365 3qhy_B Beta-lactamase inhibito 37.0 3.3E+02 0.011 27.2 12.8 139 569-729 64-204 (282)
366 1sqj_A OXG-RCBH, oligoxylogluc 35.4 3.6E+02 0.012 31.5 14.4 154 567-726 14-195 (789)
367 4fhn_B Nucleoporin NUP120; pro 32.5 78 0.0027 39.0 8.3 38 609-647 239-276 (1139)
368 1sqj_A OXG-RCBH, oligoxylogluc 28.4 4.2E+02 0.014 30.9 13.4 120 606-725 13-145 (789)
369 1suu_A DNA gyrase subunit A; t 26.3 5.3E+02 0.018 26.2 19.0 152 576-729 56-228 (312)
370 3f7f_A Nucleoporin NUP120; nuc 26.1 78 0.0027 36.9 6.1 38 608-648 222-259 (729)
371 3zwu_A Alkaline phosphatase PH 25.3 1.4E+02 0.0048 33.9 8.1 58 609-667 477-548 (592)
372 1ex2_A Protein MAF; structural 25.1 24 0.00083 34.0 1.5 18 77-94 8-25 (189)
373 4a9v_A PHOX; hydrolase, beta-p 24.7 2E+02 0.0067 32.6 9.0 60 608-668 476-549 (592)
374 4fhn_B Nucleoporin NUP120; pro 23.0 44 0.0015 41.2 3.6 37 458-494 239-275 (1139)
375 3s25_A Hypothetical 7-bladed b 23.0 5.9E+02 0.02 25.6 24.7 100 575-682 152-257 (302)
376 3al9_A Plexin-A2; beta-propell 22.0 98 0.0034 34.8 5.9 64 419-482 411-476 (539)
377 3zwu_A Alkaline phosphatase PH 21.8 1.6E+02 0.0055 33.4 7.7 60 651-718 477-548 (592)
378 2p5x_A ASMTL, N-acetylserotoni 21.5 34 0.0012 34.0 1.8 18 77-94 9-26 (230)
379 2cn3_A Xyloglucanase, beta-1,4 20.8 5.7E+02 0.019 29.4 12.5 114 608-721 23-152 (737)
380 3ol2_B Plexin-B1; beta-propell 20.8 1.6E+02 0.0056 32.8 7.3 65 418-483 397-462 (528)
381 4a9v_A PHOX; hydrolase, beta-p 20.8 2.8E+02 0.0096 31.4 9.2 59 568-627 476-549 (592)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.8e-41 Score=391.54 Aligned_cols=427 Identities=15% Similarity=0.154 Sum_probs=324.0
Q ss_pred CCceeEEeccccCCccceeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCcc--cc
Q 004404 300 NGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMK--SK 374 (755)
Q Consensus 300 ~g~~~~~~e~~~dG~~~~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~--~k 374 (755)
+|+.++... +..-+||++.+++.+ ..+.||+..|..++|+|+ +++|+.|++|+ +||..++... ..
T Consensus 29 dg~~l~~~~----~~~v~l~~~~~~~~~-----~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~-lWd~~~~~~~~~~~ 98 (611)
T 1nr0_A 29 AGDKIQYCN----GTSVYTVPVGSLTDT-----EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR-IWDTTQTTHILKTT 98 (611)
T ss_dssp TSSEEEEEE----TTEEEEEETTCSSCC-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEESSSTTCCEEEE
T ss_pred CCCEEEeCC----CCEEEEecCCCcccC-----eEecCCCCceEEEEECCCCcEEEEEeCCCCEE-EeECCCCcceeeEe
Confidence 455554432 235578998887776 678899999999999998 99999999999 9998765432 23
Q ss_pred ccCCcccccceeEEeeccccccccC---------ccccC----CccCCCceeeeeecCC---CcEEEEeCCCcEEEEeeC
Q 004404 375 KKGSWFKSIRTVASSVTGHKERRSS---------DERDT----SSEKGGRRSSSATDDS---QDVSFHGQERVRVRQYGK 438 (755)
Q Consensus 375 ~k~~~~~~v~sv~~s~~g~~~~~~~---------~~~~~----~~~~g~~~~vs~~~ds---~~~l~sg~~dg~Vriwd~ 438 (755)
+ .+|...|.++++++++....... ..|+. ....++...+.+...+ +..+++++.|++|++|+.
T Consensus 99 ~-~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 99 I-PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177 (611)
T ss_dssp E-ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred e-cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 3 37888899999999876533221 12332 1234555545554444 446899999999999997
Q ss_pred CCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeec--ccccCccccEEEeecCCCCc
Q 004404 439 SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE--KQEDGHLNMLLLANGSPEPT 516 (755)
Q Consensus 439 ~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~--~~~~~~~~~v~~v~~s~dg~ 516 (755)
...+ ..+.+.+|.+.|++++|+|+|++||||+.|++|+|||+.+++....+.. ....+|...+..+.|+|++.
T Consensus 178 ~~~~-----~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 252 (611)
T 1nr0_A 178 PPFK-----FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252 (611)
T ss_dssp TTBE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred CCCe-----EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC
Confidence 6432 3456889999999999999999999999999999999988877665521 11126888999999999999
Q ss_pred eeccccCCCceeeeccccccccccccc-------------Cccc-------ccceeeecC-CCceEEeccCCCCEEEEEe
Q 004404 517 SLSPKHLDNHLEKKRRGRSINRKSLSL-------------DHMV-------VPETVFALS-DKPICSFQGHLDDVLDLSW 575 (755)
Q Consensus 517 ~l~~~s~d~~i~~~~~~~~~~~~s~s~-------------d~~~-------~~~~v~~~s-~k~i~~l~gH~~~V~~L~~ 575 (755)
.+++++.++.+.++..........+.. +... ....+|+.. ++++..+.+|...|++++|
T Consensus 253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~ 332 (611)
T 1nr0_A 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS 332 (611)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE
Confidence 999999999988887543211111100 0000 001334432 3456678899999999999
Q ss_pred cCC-cEEEEEeCCCcEEEEECCCCcEEEEe--------------------------------------------------
Q 004404 576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIF-------------------------------------------------- 604 (755)
Q Consensus 576 spd-~~LaSgs~DgtVrLWDl~t~~~~~~~-------------------------------------------------- 604 (755)
+|+ .+|++++.|++|++||+.++++...+
T Consensus 333 spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 412 (611)
T 1nr0_A 333 SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCC
Confidence 998 78999999999999999876543322
Q ss_pred ---------------------------------ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE--EEeccCC
Q 004404 605 ---------------------------------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLH 649 (755)
Q Consensus 605 ---------------------------------~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~--v~~~~~~ 649 (755)
.|...+.+++|+| ++++|++|+.|++|+|||+.++.+ +....|.
T Consensus 413 ~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~ 491 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP 491 (611)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECS
T ss_pred CCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeeccCCC
Confidence 1234578899999 999999999999999999988654 2346688
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCC-CeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEE
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVW 728 (755)
..|++++|+|+|++|++++.|+.|++|++.+ +++.... .+..|...|++++|+|+++ +|++++.|++|+||
T Consensus 492 ~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~-------~~~~H~~~V~~v~fspdg~-~lasgs~D~~v~lW 563 (611)
T 1nr0_A 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN-------SWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVW 563 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC-------CCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee-------eeeecccceeEEEECCCCC-EEEEEECCCcEEEE
Confidence 8999999999999999999999999999987 5443321 1235999999999999998 89999999999999
Q ss_pred EC--C-cce-EEeecC-CccEEEEEEEE
Q 004404 729 DG--I-DLV-HKFKGE-NYVQYMVCIVL 751 (755)
Q Consensus 729 D~--~-~ll-~~~~GH-~~~V~sv~fs~ 751 (755)
|. + +.+ ..+.+| ...|.+++|++
T Consensus 564 ~~~~~~~~~~~~~~~h~~~~v~~v~fs~ 591 (611)
T 1nr0_A 564 NMNKPSDHPIIIKGAHAMSSVNSVIWLN 591 (611)
T ss_dssp ETTCTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred ECCCcccccchhhccCcccCeeEEEEcC
Confidence 94 2 244 778899 89999999986
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-37 Score=358.49 Aligned_cols=371 Identities=22% Similarity=0.353 Sum_probs=299.7
Q ss_pred ceeeeccCCCceeEEeccccCCccceeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCC
Q 004404 292 GCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSG 368 (755)
Q Consensus 292 ~~~i~~ld~g~~~~~~e~~~dG~~~~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~ 368 (755)
..++.-..+|+.++... .||.. ++|+. +++.+ ..+.+|...|..++|.++ +++++.|++++ +|+. .
T Consensus 183 v~~~~~~~~~~~l~~~~--~d~~v-~~w~~-~~~~~-----~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~-~w~~-~ 251 (577)
T 2ymu_A 183 VWGVAFSPDGQTIASAS--DDKTV-KLWNR-NGQLL-----QTLTGHSSSVRGVAFSPDGQTIASASDDKTVK-LWNR-N 251 (577)
T ss_dssp EEEEEECTTSSCEEEEE--TTSEE-EEECT-TSCEE-----EEEECCSSCEEEEEECTTSSCEEEEETTSCEE-EECT-T
T ss_pred eeeeeecCCCCEEEEEc--CCCEE-EEEeC-CCcEE-----EEEecCCCCEEEEEECCCCCEEEEEeCCCEEE-EEeC-C
Confidence 33444344555555432 24443 45654 45555 567899999999999987 88999999999 9985 3
Q ss_pred CCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceee
Q 004404 369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYK 448 (755)
Q Consensus 369 g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~ 448 (755)
++....+. +|...|..+++.+++ ..++++..++.|++|+.... .
T Consensus 252 ~~~~~~~~-~~~~~v~~v~~~~d~-----------------------------~~l~~~~~d~~i~~w~~~~~------~ 295 (577)
T 2ymu_A 252 GQLLQTLT-GHSSSVNGVAFRPDG-----------------------------QTIASASDDKTVKLWNRNGQ------L 295 (577)
T ss_dssp SCEEEEEC-CCSSCEEEEEECTTS-----------------------------SEEEEEETTSCEEEEETTSC------E
T ss_pred CCEEEEEe-cCCCCEEEEEEcCCC-----------------------------CEEEEEeCCCEEEEEeCCCc------E
Confidence 44443333 455555555554332 34677888999999996422 2
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
.+.+.+|...|++++|+|++++|++++.|++|++|++.... ...+ .++...+..++++|++..++++..++.+
T Consensus 296 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~dg~v- 368 (577)
T 2ymu_A 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTL-----TGHSSSVWGVAFSPDGQTIASASDDKTV- 368 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEE-----CCCSSCEEEEEECTTSSEEEEEETTSEE-
T ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEE-----eCCCCCEEEEEECCCCCEEEEEeCCCEE-
Confidence 45678999999999999999999999999999999986543 3332 4667888999999999999998877766
Q ss_pred eecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-c
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h 606 (755)
.+|+..++.+..+.+|...|.+++|+|+ .+|++++.|++|++||. +++.+..+. |
T Consensus 369 ----------------------~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~ 425 (577)
T 2ymu_A 369 ----------------------KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 425 (577)
T ss_dssp ----------------------EEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECC
T ss_pred ----------------------EEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCC
Confidence 5666777888899999999999999998 67999999999999996 466666665 9
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
...|++++|+| ++++|++++.|++|++||+....+..+..|...|++++|+|++++|++++.|+.|++||.. ++.+..
T Consensus 426 ~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~~ 503 (577)
T 2ymu_A 426 SSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT 503 (577)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEEEE
T ss_pred CCCeEEEEECC-CCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEEEE
Confidence 99999999999 9999999999999999998666566777888999999999999999999999999999964 454443
Q ss_pred cccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE-CCcceEEeecCCccEEEEEEEE
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD-~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+.+|...|++++|+|+++ +|++++.|+.|+||| .+++++.+.+|...|.+++|+|
T Consensus 504 ---------~~~h~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~ 559 (577)
T 2ymu_A 504 ---------LTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 559 (577)
T ss_dssp ---------EECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT
T ss_pred ---------EeCCCCCEEEEEEcCCCC-EEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcC
Confidence 348999999999999998 899999999999999 6889999999999999999874
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.6e-37 Score=354.38 Aligned_cols=401 Identities=20% Similarity=0.299 Sum_probs=315.2
Q ss_pred cceeeeccCCCceeEEeccccCCccceeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCC
Q 004404 291 QGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSS 367 (755)
Q Consensus 291 ~~~~i~~ld~g~~~~~~e~~~dG~~~~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~ 367 (755)
..+|++==-+|+.++.-. .||. -+||+. +++.+ ..|.||+..|..|+|+|+ +++++.|++|+ +||.
T Consensus 18 ~V~~~a~spdg~~las~~--~d~~-v~iWd~-~~~~~-----~~l~gh~~~V~~l~fspdg~~las~~~d~~i~-vWd~- 86 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASAS--DDKT-VKLWNR-NGQLL-----QTLTGHSSSVWGVAFSPDGQTIASASDDKTVK-LWNR- 86 (577)
T ss_dssp CEEEEEECTTSSCEEEEE--TTSE-EEEECT-TSCEE-----EEEECCSSCEEEEEECTTSSEEEEEETTSCEE-EEET-
T ss_pred cEEEEEECCCCCEEEEEe--CCCE-EEEEEC-CCCEE-----EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEE-EEEC-
Confidence 355655333666665532 2554 457884 67766 678999999999999998 89999999999 9995
Q ss_pred CCCccccccCCcccccceeEEeeccccccccCcc-----ccCC------------------ccCC---------------
Q 004404 368 GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDE-----RDTS------------------SEKG--------------- 409 (755)
Q Consensus 368 ~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~-----~~~~------------------~~~g--------------- 409 (755)
+++....++ +|...|..+++++++........+ |+.. ..++
T Consensus 87 ~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 165 (577)
T 2ymu_A 87 NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165 (577)
T ss_dssp TSCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CCCEEEEEE-CCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceec
Confidence 566666666 788889999998876542211111 1000 0000
Q ss_pred ----------------CceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEE
Q 004404 410 ----------------GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS 473 (755)
Q Consensus 410 ----------------~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaT 473 (755)
....+....+ ...+++++.++.|++|+... ...+.+.+|...|.+++|+|++++|++
T Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~~~v~~~~~s~dg~~l~~ 238 (577)
T 2ymu_A 166 WNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAFSPDGQTIAS 238 (577)
T ss_dssp ECTTSCEEEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECTTS------CEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred cccceeeeeeccCCCcceeeeeecCC-CCEEEEEcCCCEEEEEeCCC------cEEEEEecCCCCEEEEEECCCCCEEEE
Confidence 0011111222 23468889999999998642 234567899999999999999999999
Q ss_pred EECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceee
Q 004404 474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF 553 (755)
Q Consensus 474 gs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~ 553 (755)
++.|+.|++|+.. ++....+ .++...+..+.++|++..++++..++.+ .+|
T Consensus 239 ~~~d~~i~~w~~~-~~~~~~~-----~~~~~~v~~v~~~~d~~~l~~~~~d~~i-----------------------~~w 289 (577)
T 2ymu_A 239 ASDDKTVKLWNRN-GQLLQTL-----TGHSSSVNGVAFRPDGQTIASASDDKTV-----------------------KLW 289 (577)
T ss_dssp EETTSCEEEECTT-SCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCE-----------------------EEE
T ss_pred EeCCCEEEEEeCC-CCEEEEE-----ecCCCCEEEEEEcCCCCEEEEEeCCCEE-----------------------EEE
Confidence 9999999999964 3434333 5677889999999999999988777776 566
Q ss_pred ecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcE
Q 004404 554 ALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKV 632 (755)
Q Consensus 554 ~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtV 632 (755)
+..++.+..+.+|...|++++|+|+ ..|++++.|++|++||+..........|...|.+++|+| ++++|++++.|++|
T Consensus 290 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 290 NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTV 368 (577)
T ss_dssp ETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred eCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEE
Confidence 6777888889999999999999998 789999999999999987665544445999999999999 99999999999999
Q ss_pred EEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 633 RIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 633 rIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
++||.....+.....|...|++++|+|+|++|++++.|+.|++||.. ++.... +.+|...|++++|+|++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~---------~~~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 369 KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT---------LTGHSSSVWGVAFSPDD 438 (577)
T ss_dssp EEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEE---------EECCSSCEEEEEECTTS
T ss_pred EEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEE---------ecCCCCCeEEEEECCCC
Confidence 99997655555667788899999999999999999999999999964 444332 34899999999999999
Q ss_pred CeEEEEEECCCcEEEEE-CCcceEEeecCCccEEEEEEEE
Q 004404 713 SSEVLVTSADSRIRVVD-GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 713 ~~~L~sgs~Dg~IrVWD-~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
. +|++++.|++|++|| .++++..+.+|...|.+++|+|
T Consensus 439 ~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~sp 477 (577)
T 2ymu_A 439 Q-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 477 (577)
T ss_dssp S-EEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECT
T ss_pred C-EEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcC
Confidence 8 899999999999999 6788999999999999999864
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.7e-36 Score=322.28 Aligned_cols=287 Identities=16% Similarity=0.255 Sum_probs=243.1
Q ss_pred CCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeeccc
Q 004404 377 GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN 456 (755)
Q Consensus 377 ~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~ 456 (755)
.+|...|.++++++++.. ....+++|+.|+.|++|+...... .....+.+|.
T Consensus 29 ~~H~~~V~~v~~~~~~~~-------------------------~~~~l~tgs~D~~v~vW~~~~~~~---~~~~~l~gh~ 80 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKE-------------------------NSETVVTGSLDDLVKVWKWRDERL---DLQWSLEGHQ 80 (321)
T ss_dssp TSSSSCEEEEEEC--------------------------------CEEEEEETTSCEEEEEEETTEE---EEEEEECCCS
T ss_pred ccCCCcEEEEEEecCCCC-------------------------CCCEEEEEcCCCCEEEEECCCCCe---eeeeeeccCC
Confidence 367777877777654211 124678999999999999865432 2334578999
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccc
Q 004404 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (755)
Q Consensus 457 ~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~ 536 (755)
..|.+++|++++.+|++++.|++|+|||+.+++....+ ..+...+..+.++|++..++++..++.+.
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~-----~~~~~~~~~~~~spdg~~l~~g~~dg~v~-------- 147 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI-----DAGPVDAWTLAFSPDSQYLATGTHVGKVN-------- 147 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-----ECCTTCCCCEEECTTSSEEEEECTTSEEE--------
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEE-----eCCCccEEEEEECCCCCEEEEEcCCCcEE--------
Confidence 99999999999999999999999999999998877665 33445667789999999999998887773
Q ss_pred cccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEE
Q 004404 537 NRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCI 613 (755)
Q Consensus 537 ~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsV 613 (755)
+|.+ .++....+..|...|.+++|+|+ .+|++++.|++|++||+.+++++..+. |..+|+++
T Consensus 148 ---------------i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 212 (321)
T 3ow8_A 148 ---------------IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSL 212 (321)
T ss_dssp ---------------EEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEE
T ss_pred ---------------EEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEE
Confidence 3333 34566778889999999999998 789999999999999999999999886 99999999
Q ss_pred EEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccc
Q 004404 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ 692 (755)
Q Consensus 614 afsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~ 692 (755)
+|+| ++++|++|+.|++|+|||++++++. .+..|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+
T Consensus 213 ~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~----- 286 (321)
T 3ow8_A 213 TFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF----- 286 (321)
T ss_dssp EECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-----
T ss_pred EEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-----
Confidence 9999 9999999999999999999998877 45567789999999999999999999999999999999887654
Q ss_pred cccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 693 NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 693 ~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
.+|...|++++|+|++. +|++++.|++|+|||.
T Consensus 287 ----~~h~~~v~~v~~s~~g~-~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 287 ----FDHQDQVWGVKYNGNGS-KIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ----CCCSSCEEEEEECTTSS-EEEEEETTCCEEEEEC
T ss_pred ----cCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEeC
Confidence 37999999999999998 8999999999999994
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-36 Score=356.67 Aligned_cols=367 Identities=16% Similarity=0.198 Sum_probs=277.8
Q ss_pred eeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc----cccCCCCCccccccCCCCCCccccccCCcccccceeEEeecc
Q 004404 317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN----VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG 392 (755)
Q Consensus 317 ~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~----~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g 392 (755)
.++...+|+.+ ..+.||...|..++|+|+ +++|+.|++|+ +|+..++.....++ +|...|.+++++++|
T Consensus 130 ~v~~wd~~~~~-----~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~-lwd~~~~~~~~~l~-~H~~~V~~v~fspdg 202 (611)
T 1nr0_A 130 HVFLFDTGTSN-----GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA-IFEGPPFKFKSTFG-EHTKFVHSVRYNPDG 202 (611)
T ss_dssp EEEETTTCCBC-----BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE-EEETTTBEEEEEEC-CCSSCEEEEEECTTS
T ss_pred EEEEeeCCCCc-----ceecCCCCCceEEEECCCCCeEEEEEeCCCeEE-EEECCCCeEeeeec-cccCceEEEEECCCC
Confidence 35555566665 567999999999999986 89999999999 99988776666665 677788887777653
Q ss_pred ccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeee--eEeecccCCEEEEEEcCCCCE
Q 004404 393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKC--QEIQAHNGSIWSIKFSLDGRY 470 (755)
Q Consensus 393 ~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~--q~l~gH~~~I~sI~fSpdg~~ 470 (755)
..+++++.|+.|++|+...++....+.. ....+|.+.|++|+|+|+|++
T Consensus 203 -----------------------------~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 253 (611)
T 1nr0_A 203 -----------------------------SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253 (611)
T ss_dssp -----------------------------SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred -----------------------------CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE
Confidence 3467889999999999876654322210 001279999999999999999
Q ss_pred EEEEECCCcEEEEeCcCCceeeeeec--------------------------------------ccccCccccEEEeecC
Q 004404 471 LASAGEDCVIHVWQVVESERKGELLE--------------------------------------KQEDGHLNMLLLANGS 512 (755)
Q Consensus 471 LaTgs~DGtVrVWdl~t~~~~~~l~~--------------------------------------~~~~~~~~~v~~v~~s 512 (755)
|+|++.|++|+|||+.+++....+.. ....+|...+..++++
T Consensus 254 l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s 333 (611)
T 1nr0_A 254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS 333 (611)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe
Confidence 99999999999999988776554321 0124677889999999
Q ss_pred CCCceeccccCCCceeeecccccccc-------------cccccCcccc------cceeeecC-----------------
Q 004404 513 PEPTSLSPKHLDNHLEKKRRGRSINR-------------KSLSLDHMVV------PETVFALS----------------- 556 (755)
Q Consensus 513 ~dg~~l~~~s~d~~i~~~~~~~~~~~-------------~s~s~d~~~~------~~~v~~~s----------------- 556 (755)
|++..+++++.++.+..+........ ..++.+..+. ...+|...
T Consensus 334 pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 413 (611)
T 1nr0_A 334 ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 413 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCC
Confidence 99999999999998887764321110 0000000000 00111110
Q ss_pred -------------------------CCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcE--EEEeecCC
Q 004404 557 -------------------------DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC--LKIFSHSD 608 (755)
Q Consensus 557 -------------------------~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~--~~~~~h~~ 608 (755)
...+..+. |...+.+++|+|+ .+|++|+.|++|+|||+..+.. +....|..
T Consensus 414 ~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~ 492 (611)
T 1nr0_A 414 PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 492 (611)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEETTEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSS
T ss_pred CcEEEEeCCCcEEEEEeCceEEEEeCCceeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCC
Confidence 01122332 6678999999999 7899999999999999987654 34456999
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCC-CcEEEe--cc-CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDW--ND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-~~~v~~--~~-~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
.|++|+|+| ++++|++++.|++|++|++.+ ++++.. .. |...|++++|+|+|++|++|+.|++|+|||+.++...
T Consensus 493 ~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~ 571 (611)
T 1nr0_A 493 EITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 571 (611)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred ceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccc
Confidence 999999999 999999999999999999987 554432 23 7789999999999999999999999999999876522
Q ss_pred eccccccccccccCC-CCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 685 QKSPINLQNKKKRSH-QRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h-~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
.. ..+.+| ...|++++|+|++. |++++.|++|++||.
T Consensus 572 ~~-------~~~~~h~~~~v~~v~fs~d~~--l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 572 PI-------IIKGAHAMSSVNSVIWLNETT--IVSAGQDSNIKFWNV 609 (611)
T ss_dssp CE-------EETTSSTTSCEEEEEEEETTE--EEEEETTSCEEEEEC
T ss_pred cc-------hhhccCcccCeeEEEEcCCCE--EEEecCCCCEEEEec
Confidence 10 113478 89999999999984 999999999999984
No 6
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.6e-35 Score=314.17 Aligned_cols=279 Identities=14% Similarity=0.250 Sum_probs=242.2
Q ss_pred CCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 420 s~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
...++++++.|++|++|++...+.......+.+.+|...|.+++|+|++++|+||+.|++|+|||+.+++....+
T Consensus 29 ~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~----- 103 (319)
T 3frx_A 29 QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF----- 103 (319)
T ss_dssp CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----
T ss_pred CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE-----
Confidence 346789999999999999875554444556778999999999999999999999999999999999998877665
Q ss_pred cCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-
Q 004404 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd- 578 (755)
.+|...+..+.+++++.++++++.++.+ .+|++.++.+..+.+|...|.++.|.|.
T Consensus 104 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i-----------------------~vwd~~~~~~~~~~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 104 VGHKSDVMSVDIDKKASMIISGSRDKTI-----------------------KVWTIKGQCLATLLGHNDWVSQVRVVPNE 160 (319)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSCE-----------------------EEEETTSCEEEEECCCSSCEEEEEECCC-
T ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeE-----------------------EEEECCCCeEEEEeccCCcEEEEEEccCC
Confidence 5778899999999999999999888887 6777777888899999999999999985
Q ss_pred ------cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCC
Q 004404 579 ------QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM 651 (755)
Q Consensus 579 ------~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~ 651 (755)
..|++++.|++|++||+.+.+....+. |...|++++|+| ++++|++|+.|++|+|||+.+++++.....+..
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 239 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECCSC
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCc
Confidence 279999999999999999998888875 999999999999 999999999999999999999998887778889
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 652 VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
|.+++|+|++.+|++++. +.+++|++........+..... .....|...|.+++|+|+|+ +|++|+.|++|+|||.
T Consensus 240 v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFA-GYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQV 315 (319)
T ss_dssp EEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCT-TCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCcccc-ccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEE
Confidence 999999999999999875 4599999998776654321111 11235677899999999998 8999999999999993
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.2e-36 Score=325.66 Aligned_cols=286 Identities=18% Similarity=0.242 Sum_probs=240.0
Q ss_pred HHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCC
Q 004404 333 EMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (755)
Q Consensus 333 ~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g 409 (755)
..+.||+..|..++|+++ +++|+.|++|+ +||..++....... .+...+..++++++|
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~-vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g----------------- 118 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVI-VWDSFTTNKEHAVT-MPCTWVMACAYAPSG----------------- 118 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTCCEEEEEE-CSSSCCCEEEECTTS-----------------
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEE-EEECCCCCcceEEe-cCCCCEEEEEECCCC-----------------
Confidence 457899999999999998 99999999999 99998776544433 333445555544432
Q ss_pred CceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccc-eeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCC
Q 004404 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTA-LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (755)
Q Consensus 410 ~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~-~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~ 488 (755)
..+++|..|+.|++|++....... ......+.+|.+.|.+++|+|++.+|+|++.|++|++||+.++
T Consensus 119 ------------~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~ 186 (354)
T 2pbi_B 119 ------------CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG 186 (354)
T ss_dssp ------------SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred ------------CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Confidence 456889999999999986543221 1234567799999999999999999999999999999998654
Q ss_pred ceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCC
Q 004404 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (755)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~ 568 (755)
+ .+..+.+|..
T Consensus 187 ~---------------------------------------------------------------------~~~~~~~h~~ 197 (354)
T 2pbi_B 187 Q---------------------------------------------------------------------LLQSFHGHGA 197 (354)
T ss_dssp C---------------------------------------------------------------------EEEEEECCSS
T ss_pred e---------------------------------------------------------------------EEEEEcCCCC
Confidence 3 2344568999
Q ss_pred CEEEEEecCC---cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE
Q 004404 569 DVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (755)
Q Consensus 569 ~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~ 644 (755)
.|.+++|+|+ .+|++|+.|++|++||+++++++..+. |...|++++|+| ++.+|++|+.|++|++||+++.+.+.
T Consensus 198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~ 276 (354)
T 2pbi_B 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVA 276 (354)
T ss_dssp CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 9999999884 689999999999999999999999886 999999999999 99999999999999999999987765
Q ss_pred eccCC---CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 645 WNDLH---EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 645 ~~~~~---~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
..... ..+.+++|+|+|++|++|+.|+.|++||+.++..+.. +.+|...|++++|+|++. +|++++.
T Consensus 277 ~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~---------l~~h~~~v~~l~~spdg~-~l~sgs~ 346 (354)
T 2pbi_B 277 IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI---------LFGHENRVSTLRVSPDGT-AFCSGSW 346 (354)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE---------ECCCSSCEEEEEECTTSS-CEEEEET
T ss_pred EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE---------EECCCCcEEEEEECCCCC-EEEEEcC
Confidence 54433 4789999999999999999999999999998876654 348999999999999998 8999999
Q ss_pred CCcEEEEE
Q 004404 722 DSRIRVVD 729 (755)
Q Consensus 722 Dg~IrVWD 729 (755)
|++|+||+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999996
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.4e-36 Score=325.80 Aligned_cols=229 Identities=16% Similarity=0.180 Sum_probs=196.6
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..+++|+.|+.|++||+.+++...... ..+.+|.+.|++|+|+|+|++|++|+.|++|+|||+.+++
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~-~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~------------ 160 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENETLIVSK-FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV------------ 160 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTSSCEEEE-EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------------
T ss_pred CeEEEEECCCEEEEEeccCCCceeEee-ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc------------
Confidence 356789999999999998776543332 3466999999999999999999999999999999986543
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--c
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--Q 579 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~ 579 (755)
++..+.+|...|++++|+|+ .
T Consensus 161 ---------------------------------------------------------~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 161 ---------------------------------------------------------VLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp ---------------------------------------------------------EEEEECCCSSCEEEEEECSSCTT
T ss_pred ---------------------------------------------------------EEEEEcCcCCceEEEEecCCCCC
Confidence 24456789999999999997 5
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEee---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEE
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAA 655 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~Vtsv 655 (755)
.|++++.|++|+|||++++++...+. +...+++++|+|.++++|++|+.|++|+|||+++++++ .+..|...|+++
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 78999999999999999999888874 66789999999966789999999999999999998876 456678899999
Q ss_pred EEccCC-CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 656 CYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 656 afSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+|+|++ ++|++|+.|++|+|||+.++++.. +.+|...|++++|+|+++.+|++++.|++|++|+.
T Consensus 264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~----------~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 264 VFSPHSVPFLASLSEDCSLAVLDSSLSELFR----------SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTCCEEEE----------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCcEEE----------EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 999998 679999999999999999887653 24899999999999999867889999999999994
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.9e-35 Score=312.32 Aligned_cols=265 Identities=16% Similarity=0.258 Sum_probs=231.0
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
.++|.+|.+.|++|+|+|++++|+||+.||+|+|||+.+++....+ ..+...+..+.+++++.+++++..++.+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~s~d~~i- 79 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-----QVTETPVRAGKFIARKNWIIVGSDDFRI- 79 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEEEGGGTEEEEEETTSEE-
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-----eccCCcEEEEEEeCCCCEEEEECCCCEE-
Confidence 4568899999999999999999999999999999999988777665 4566788999999999999999888887
Q ss_pred eecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCC-cEEEEee
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS 605 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~-~~~~~~~ 605 (755)
.+|++ +++.+..+.+|...|++++|+|+ .+|++|+.|++|++||+.++ .+...+.
T Consensus 80 ----------------------~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 80 ----------------------RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp ----------------------EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred ----------------------EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence 45554 45678889999999999999998 78999999999999999887 4455564
Q ss_pred -cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-Ee-ccCCCCEEEEEEcc--CCCEEEEEECCCcEEEEECCC
Q 004404 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DW-NDLHEMVTAACYTP--DGQGALVGSYKGSCHLYNTSE 680 (755)
Q Consensus 606 -h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~-~~~~~~VtsvafSP--dG~~LasGs~DG~I~lwDl~~ 680 (755)
|...|++++|+|.++.+|++|+.|++|++||+.+.... .. ..+...+..++|+| ++++|++|+.|+.|++||+++
T Consensus 138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence 99999999999966789999999999999999876543 22 34457899999987 778999999999999999999
Q ss_pred CeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
++.+..+ .+|...|+.++|+|+++ +|++++.|++|+||| .+++++++..|...++++++.|
T Consensus 218 ~~~~~~~---------~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 218 KSCVATL---------EGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp TEEEEEE---------ECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred Cccceee---------CCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 8877653 48999999999999998 899999999999999 5789999999999999988754
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-35 Score=325.94 Aligned_cols=265 Identities=20% Similarity=0.380 Sum_probs=235.5
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..+++|+.|+.|++||..+++.. +.+.+|.+.|++|+|+|++++|++|+.|++|+|||+.+.+....+ .+
T Consensus 121 ~~l~s~s~Dg~i~vwd~~~~~~~-----~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~-----~~ 190 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDYETGDFE-----RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-----HG 190 (410)
T ss_dssp SEEEEEESSSCEEEEETTTCCCC-----EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC-----CC
T ss_pred CEEEEEeCCCeEEEEECCCCcEE-----EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE-----cC
Confidence 46789999999999999876643 457799999999999999999999999999999999888776664 57
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-c
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q 579 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~ 579 (755)
|...+..+.++|++..+++++.++.+ .+|++ +++++..+.+|...|.++.|+|+ .
T Consensus 191 h~~~V~~v~~~p~~~~l~s~s~D~~i-----------------------~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 191 HDHNVSSVSIMPNGDHIVSASRDKTI-----------------------KMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEE-----------------------EEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeE-----------------------EEEECCCCcEEEEEeCCCccEEEEEECCCCC
Confidence 78899999999999999999888887 44444 45677889999999999999998 7
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCC--------------------CcEEEEEECCCcEEEEECC
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVD--------------------DRYFISGSLDAKVRIWSIP 638 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~d--------------------g~~LaSgS~DgtVrIWDl~ 638 (755)
+|++++.|++|++||+.++++...+. |...|.+++|+| + +.+|++|+.|++|++||++
T Consensus 248 ~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP-ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECC-SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcC-cccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 89999999999999999999998885 999999999999 5 5689999999999999999
Q ss_pred CCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEE
Q 004404 639 ERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (755)
Q Consensus 639 t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~ 717 (755)
+++++ .+..|...|++++|+|+|++|++|+.||.|++||+.+++.+..+ .+|...|++++|+|+++ +|+
T Consensus 327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~---------~~h~~~v~~l~~~~~~~-~l~ 396 (410)
T 1vyh_C 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---------NAHEHFVTSLDFHKTAP-YVV 396 (410)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE---------ECCSSCEEEEEECSSSS-CEE
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE---------cCCCCcEEEEEEcCCCC-EEE
Confidence 99877 45567789999999999999999999999999999988766543 38999999999999998 899
Q ss_pred EEECCCcEEEEEC
Q 004404 718 VTSADSRIRVVDG 730 (755)
Q Consensus 718 sgs~Dg~IrVWD~ 730 (755)
+|+.|++|+||+.
T Consensus 397 sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 397 TGSVDQTVKVWEC 409 (410)
T ss_dssp EEETTSEEEEEC-
T ss_pred EEeCCCcEEEEeC
Confidence 9999999999983
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-34 Score=313.70 Aligned_cols=267 Identities=17% Similarity=0.324 Sum_probs=227.3
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..+++++.|++|++|+..+++ ....+..|...|.+++|+|++++|++|+.|+.|++|++.+.+....+. ....+
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~-~~~~~ 141 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS-RELAG 141 (340)
T ss_dssp SEEEEEETTTEEEEEETTTCC-----EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEE-EEEEC
T ss_pred CEEEEEeCCCcEEEEECCCCC-----cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeE-EEecC
Confidence 457889999999999987554 345567899999999999999999999999999999997764322211 11356
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-c
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q 579 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~ 579 (755)
|...+.++.+.+++. ++++..++.+ .+|++ +++++..+.+|...|++++|+|+ .
T Consensus 142 h~~~v~~~~~~~~~~-l~s~s~d~~i-----------------------~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 142 HTGYLSCCRFLDDNQ-IVTSSGDTTC-----------------------ALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSCE-----------------------EEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCccEEEEEECCCCc-EEEEECCCcE-----------------------EEEECCCCcEEEEEcCCCCceEEEEECCCCC
Confidence 778888888888876 4555566666 45554 45677889999999999999998 7
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC---CCEEEE
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH---EMVTAA 655 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~---~~Vtsv 655 (755)
+|++|+.|++|++||+.++.++..+. |...|++++|+| ++++|++|+.|++|++||+++++.+....+. ..|+++
T Consensus 198 ~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 89999999999999999999999886 999999999999 9999999999999999999998877655544 379999
Q ss_pred EEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 656 afSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+|+|+|++|++|+.||.|++||+.+++....+ .+|...|++++|+|++. +|++|+.|++|+|||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~---------~~h~~~v~~~~~s~dg~-~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVL---------AGHDNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEE---------ECCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEe---------ecCCCcEEEEEEcCCCC-EEEEEcCCccEEecC
Confidence 99999999999999999999999988776543 48999999999999998 899999999999997
No 12
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-34 Score=313.41 Aligned_cols=271 Identities=19% Similarity=0.314 Sum_probs=234.8
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
.+.+.+|.+.|++++|+|++++|+||+.||+|+|||+.+++....+ ..+...+..+.++|++.+++++..++.+.
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-----ECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-----ecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 4568899999999999999999999999999999999988876665 45667889999999999999998888775
Q ss_pred eecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cC
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~ 607 (755)
++...... ...+....+.+|.+.|.++.|++++.+++++.|++|++||+.+++++..+. |.
T Consensus 123 iw~~~~~~------------------~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~ 184 (340)
T 1got_B 123 IYNLKTRE------------------GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184 (340)
T ss_dssp EEETTTCS------------------BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEECccCC------------------CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCC
Confidence 44322100 011345678899999999999999999999999999999999999999886 99
Q ss_pred CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 608 ~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
..|++++|+| ++++|++|+.|++|++||++++.++. +..|...|++++|+|++++|++|+.||.|++||++.++....
T Consensus 185 ~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~ 263 (340)
T 1got_B 185 GDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263 (340)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 9999999999 99999999999999999999988774 456778999999999999999999999999999998877654
Q ss_pred cccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+. ...+...|++++|+|++. +|++|+.|+.|+||| .++.+..+.+|...|.+++|++
T Consensus 264 ~~-------~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~ 322 (340)
T 1got_B 264 YS-------HDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp EC-------CTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred Ec-------cCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC
Confidence 32 123456899999999998 899999999999999 5778899999999999999864
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-34 Score=320.98 Aligned_cols=263 Identities=21% Similarity=0.356 Sum_probs=237.2
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
..+.+|.++|++++|+|++.+|+||+.||+|+|||+.+++....+ .+|...+..+.+++++.++++++.++.+.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-----~~h~~~V~~v~~~~~~~~l~sgs~D~~i~- 175 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-----KGHTDSVQDISFDHSGKLLASCSADMTIK- 175 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCCC-
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----eccCCcEEEEEEcCCCCEEEEEeCCCeEE-
Confidence 457799999999999999999999999999999999998877665 67888999999999999999999888874
Q ss_pred ecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-c
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h 606 (755)
+|++ ..+++..+.+|...|.+++|+|+ .+|++++.|++|++||+.++.++.++. |
T Consensus 176 ----------------------iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h 233 (410)
T 1vyh_C 176 ----------------------LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233 (410)
T ss_dssp ----------------------EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ----------------------EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence 4444 33567788999999999999998 789999999999999999999999886 9
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccC--------------------CCEEE
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPD--------------------GQGAL 665 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPd--------------------G~~La 665 (755)
...|.++.|+| ++.+|++|+.|++|++||+.++++. .+..|...|.+++|+|+ |.+|+
T Consensus 234 ~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 312 (410)
T 1vyh_C 234 REWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 312 (410)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred CccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE
Confidence 99999999999 9999999999999999999998876 45567789999999996 67999
Q ss_pred EEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCcc
Q 004404 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYV 743 (755)
Q Consensus 666 sGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~ 743 (755)
+|+.|+.|++||+.++..+..+ .+|...|++++|+|++. +|++++.|++|+||| .++++..+.+|...
T Consensus 313 sgs~D~~i~iwd~~~~~~~~~~---------~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~ 382 (410)
T 1vyh_C 313 SGSRDKTIKMWDVSTGMCLMTL---------VGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHF 382 (410)
T ss_dssp EEETTSEEEEEETTTTEEEEEE---------ECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEECCSSC
T ss_pred EEeCCCeEEEEECCCCceEEEE---------ECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEEcCCCCc
Confidence 9999999999999999877653 38999999999999998 899999999999999 57889999999999
Q ss_pred EEEEEEEE
Q 004404 744 QYMVCIVL 751 (755)
Q Consensus 744 V~sv~fs~ 751 (755)
|++++|.+
T Consensus 383 v~~l~~~~ 390 (410)
T 1vyh_C 383 VTSLDFHK 390 (410)
T ss_dssp EEEEEECS
T ss_pred EEEEEEcC
Confidence 99999865
No 14
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.4e-33 Score=300.66 Aligned_cols=278 Identities=15% Similarity=0.263 Sum_probs=232.6
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
..++++|+.|++|++|++...+.......+.+.+|...|.+++|+|++++|++++.|+.|++|+.......... .
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~-----~ 125 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-----V 125 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----E
T ss_pred CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee-----c
Confidence 35688999999999999988777666677889999999999999999999999999999999999877665554 3
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC--CceEEeccCCCCEEEEEecCC
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGHLDDVLDLSWSKS 578 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~--k~i~~l~gH~~~V~~L~~spd 578 (755)
.+...+....+.+++..++++..++.+.. |+... +....+.+|...|..++|+++
T Consensus 126 ~~~~~~~~~~~~~~~~~l~s~s~d~~~~~-----------------------~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKL-----------------------WNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEE-----------------------ECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred CCCCceeEEEEeecCccceeecCCCeEEE-----------------------EEeCCCceEEEEeccccCcccceEEccC
Confidence 44556677788888888888877777643 33322 223445689999999999886
Q ss_pred ---cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEE
Q 004404 579 ---QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTA 654 (755)
Q Consensus 579 ---~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~Vts 654 (755)
..+++++.|++|++||+.+++++..+. |...|++|+|+| ++++|++|+.|++|++||+++.+.+....++..|.+
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~ 261 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 261 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEe
Confidence 568899999999999999999998886 999999999999 999999999999999999999999988888899999
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 655 vafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
++|+|++.++ +++.|+.|++||++++.....+..........+|...|++++|+|+++ +|++|+.|++|+|||
T Consensus 262 ~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 262 LCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ-TLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred eecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEe
Confidence 9999988655 555699999999999887766544433345568999999999999998 899999999999999
No 15
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.6e-34 Score=329.45 Aligned_cols=429 Identities=14% Similarity=0.141 Sum_probs=312.6
Q ss_pred ceeeeccCCCceeEEeccccCCccceeeeecCC----ceecHHHHHHhcCCcHH-HHHHHhhc--c---cccCCCCCccc
Q 004404 292 GCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTG----RQLTIEEFEMCVGHSPI-VQELMRRQ--N---VEEGNKDSFDL 361 (755)
Q Consensus 292 ~~~i~~ld~g~~~~~~e~~~dG~~~~l~d~~tg----~~lt~~e~~~~~GHs~~-V~~l~~~~--~---~~sgs~D~tv~ 361 (755)
.+++.=--+|+.+++.. +| .-.++++.++ +.+ ..+.||... |..+++++ + +++|+.|++|+
T Consensus 21 v~~~~~spdg~~l~~~~---~~-~v~v~~~~~~~~~~~~~-----~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPC---GK-SAFVRCLDDGDSKVPPV-----VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCCCEEETTTTEEEEEE---TT-EEEEEECCSSCCSSCSE-----EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred eeEEEECCCCCEEEEec---CC-eEEEEECCCCCCccccc-----eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 34444223566666554 33 4568889888 666 678999999 99999999 6 89999999999
Q ss_pred cccCCCCC--------CccccccCCcccccceeEEeeccccccccCc---------cccCC----ccCCC---ceeeeee
Q 004404 362 NNNGSSGG--------GMKSKKKGSWFKSIRTVASSVTGHKERRSSD---------ERDTS----SEKGG---RRSSSAT 417 (755)
Q Consensus 362 ~~Wd~~~g--------~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~---------~~~~~----~~~g~---~~~vs~~ 417 (755)
+|+..++ .....+. .|...+..+++++++........ .|+.. ...++ ...+...
T Consensus 92 -vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~ 169 (615)
T 1pgu_A 92 -VWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK 169 (615)
T ss_dssp -EEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEEC
T ss_pred -EEeCCCCcccccccccccchhh-cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEEC
Confidence 9999755 3333333 57778999999888765322211 12211 11222 2333444
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccC---CEEEEEEcCC-CCEEEEEECCCcEEEEeCcCCceeee
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG---SIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGE 493 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~---~I~sI~fSpd-g~~LaTgs~DGtVrVWdl~t~~~~~~ 493 (755)
+++...++++..++.|++|+....+ ....+.+|.. .|++++|+|+ +++|++++.||.|++||+.+++....
T Consensus 170 ~~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 170 QSRPMRSMTVGDDGSVVFYQGPPFK-----FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBE-----EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred CCCCcEEEEEeCCCcEEEEeCCCcc-----eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence 4544578999999999999987543 3456788999 9999999999 99999999999999999998887666
Q ss_pred eecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccC---------------cccc-------cce
Q 004404 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD---------------HMVV-------PET 551 (755)
Q Consensus 494 l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d---------------~~~~-------~~~ 551 (755)
+.. ....+...+..+.++ ++..++++..++.+..+..........+... ...+ .-.
T Consensus 245 ~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~ 322 (615)
T 1pgu_A 245 IED-DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 322 (615)
T ss_dssp CCB-TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEE
T ss_pred ecc-cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEE
Confidence 511 001677889999999 9999999988888877765432211111111 0000 012
Q ss_pred eeecC-CCceEEeccCCCCEEEEEe---------------------------------cCCcEEEEEeCCCcEEEEECC-
Q 004404 552 VFALS-DKPICSFQGHLDDVLDLSW---------------------------------SKSQHLLSSSMDKTVRLWHLS- 596 (755)
Q Consensus 552 v~~~s-~k~i~~l~gH~~~V~~L~~---------------------------------spd~~LaSgs~DgtVrLWDl~- 596 (755)
+|++. ++++..+.+|...|++++| .+.+.|++++.|+.|++|++.
T Consensus 323 ~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 323 FYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEE
T ss_pred EEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEccc
Confidence 33332 3445556555555555554 334566666666666666654
Q ss_pred ---------------------------------CCcEEEEeecCCceEEEEEeeCCCcEEEEEEC-CCcEEEEECCCCcE
Q 004404 597 ---------------------------------SKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPERQV 642 (755)
Q Consensus 597 ---------------------------------t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~-DgtVrIWDl~t~~~ 642 (755)
+++.+..+.+...+++++|+ +++|++++. |+.|++||+.+++.
T Consensus 403 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~ 479 (615)
T 1pgu_A 403 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEV 479 (615)
T ss_dssp EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEE
T ss_pred CcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccc
Confidence 45556666677888888886 689999999 99999999998876
Q ss_pred E--EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccC-CCCCeEEEEEcc---------
Q 004404 643 V--DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRS-HQRKITGFQFAP--------- 710 (755)
Q Consensus 643 v--~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~-h~~~Vtsl~fsP--------- 710 (755)
. ....+...|++++|+|++++|++|+.||.|++||+.+++.+..+ .+ |...|++++|+|
T Consensus 480 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~---------~~~h~~~v~~~~~sp~~~~~~~~~ 550 (615)
T 1pgu_A 480 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR---------WAFRTSKINAISWKPAEKGANEEE 550 (615)
T ss_dssp EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC---------SCCCSSCEEEEEECCCC------C
T ss_pred cccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEe---------ecCCCCceeEEEEcCccccccccc
Confidence 3 44567789999999999999999999999999999999887653 25 999999999999
Q ss_pred -CCCeEEEEEECCCcEEEEEC--C-cceEEeecCCccEEEEEEEE
Q 004404 711 -GSSSEVLVTSADSRIRVVDG--I-DLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 711 -dg~~~L~sgs~Dg~IrVWD~--~-~ll~~~~GH~~~V~sv~fs~ 751 (755)
++. +|++++.|++|+|||. + +++..+.+|...|.+++|++
T Consensus 551 ~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~ 594 (615)
T 1pgu_A 551 IEED-LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 594 (615)
T ss_dssp CSCC-EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE
T ss_pred cCCC-EEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcC
Confidence 887 8999999999999993 3 78999999999999999975
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.9e-34 Score=305.12 Aligned_cols=265 Identities=20% Similarity=0.334 Sum_probs=231.3
Q ss_pred eEeecccCCEEEEEEcCC----CCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCC
Q 004404 450 QEIQAHNGSIWSIKFSLD----GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpd----g~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~ 525 (755)
+.+++|.++|++|+|+|+ +.+|+||+.|++|+||++...+..... ...+|...+..+.+++++.++++++.++
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~---~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW---SLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE---EECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee---eeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 456799999999999985 679999999999999999766533221 1367888999999999999999998888
Q ss_pred ceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEE
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI 603 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~ 603 (755)
.+ .+|++ +++.+..+..|...+.+++|+|+ .+|++++.|++|++|++.+++....
T Consensus 103 ~i-----------------------~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 103 HI-----------------------RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EE-----------------------EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred cE-----------------------EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence 87 45554 45667788899999999999998 7899999999999999999998888
Q ss_pred ee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe-ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 004404 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 604 ~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~-~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~ 681 (755)
+. |...|.+++|+| ++++|++|+.|++|++||+.+++++.. ..|...|.+++|+|++++|++|+.|+.|++||+..+
T Consensus 160 ~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 160 LDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp EECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred ecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 86 888999999999 999999999999999999999988754 456779999999999999999999999999999988
Q ss_pred eeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
.....+ .+|...|++++|+|++. +|++++.|++|+||| .++++..|.+|...|++++|.+
T Consensus 239 ~~~~~~---------~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 239 NLAGTL---------SGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG 300 (321)
T ss_dssp CEEEEE---------CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred ceeEEE---------cCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC
Confidence 776543 48999999999999998 899999999999999 5789999999999999999864
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.3e-33 Score=304.64 Aligned_cols=274 Identities=20% Similarity=0.287 Sum_probs=231.9
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
..+|.+|.+.|++|+|+|++++||||+.||+|+|||..+++....+ ..+...+..+.++|++..++++..++.+.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-----~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-----TMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-----ecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 4567899999999999999999999999999999999888766654 34556788999999999999999888875
Q ss_pred eecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-c
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h 606 (755)
.+........ ........+.+|...|.+++|+|+ ..|++++.|++|++||+.+++++..+. |
T Consensus 132 v~~~~~~~~~----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h 195 (354)
T 2pbi_B 132 VYPLTFDKNE----------------NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH 195 (354)
T ss_dssp EEECCCCTTC----------------CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEeccccc----------------cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC
Confidence 5543211000 011345567789999999999998 689999999999999999999999986 9
Q ss_pred CCceEEEEEeeC-CCcEEEEEECCCcEEEEECCCCcEEEe-ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 607 SDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 607 ~~~VtsVafsP~-dg~~LaSgS~DgtVrIWDl~t~~~v~~-~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
...|.+++|+|. ++++|++|+.|++|++||+++++++.. ..|...|++++|+|++.+|++|+.|+.|++||++.+...
T Consensus 196 ~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275 (354)
T ss_dssp SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 999999999883 358999999999999999999988754 457789999999999999999999999999999988765
Q ss_pred eccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
..+. ...+...+++++|+|++. +|++++.|++|+||| .++.+..+.+|.+.|.+++|+|
T Consensus 276 ~~~~-------~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 276 AIYS-------KESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP 336 (354)
T ss_dssp EEEC-------CTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT
T ss_pred EEEc-------CCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC
Confidence 4432 123456799999999998 899999999999999 5778899999999999999865
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.9e-34 Score=311.10 Aligned_cols=294 Identities=13% Similarity=0.116 Sum_probs=228.1
Q ss_pred CCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeeccc
Q 004404 377 GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN 456 (755)
Q Consensus 377 ~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~ 456 (755)
.+|.+.|.+++++++|. .+++++.+... ..|+.|++|+...+....... ....+|.
T Consensus 39 ~~H~~~V~~v~fSpDG~------------------~las~s~d~~~-----~wd~~v~~~~~~~~~~~~~~~-~~~~~~~ 94 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGA------------------LLLAASSLSSR-----TWGGSIWVFKDPEGAPNESLC-TAGVQTE 94 (357)
T ss_dssp -CCCSEEEEEEECSSSC------------------EEEEEECSSSS-----SCCEEEEEESSCC---CGGGC-SEEEECS
T ss_pred ccccCCEEEEEECCCCC------------------EEEEEcCCCCc-----cccCeEEEEECCCCCcceeEe-cccCCCC
Confidence 46777788888887642 44444433211 237899999987665443332 3345799
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccc
Q 004404 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (755)
Q Consensus 457 ~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~ 536 (755)
..|++|+|+|+++ +++++.||+|+|||+.+++...... ....+|...+.+++++|++..++++..++.+
T Consensus 95 ~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~-~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v--------- 163 (357)
T 4g56_B 95 AGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNK-FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV--------- 163 (357)
T ss_dssp SCEEEEEEETTTE-EEEEETTSCEEEC--------CCCC-EEECCCSSCEEEEEECSSSSEEEEEETTSCE---------
T ss_pred CCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEe-eccCCCCCCEEEEEECCCCCEEEEEeCCCeE---------
Confidence 9999999999985 5678899999999998876543321 1235678899999999999999999888887
Q ss_pred cccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEee---cCCce
Q 004404 537 NRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYV 610 (755)
Q Consensus 537 ~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~---h~~~V 610 (755)
.+|+. +++.+..+.+|...|++++|+++ ..|++++.|++|+|||+++++++..+. +...|
T Consensus 164 --------------~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v 229 (357)
T 4g56_B 164 --------------KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIP 229 (357)
T ss_dssp --------------EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCE
T ss_pred --------------EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccc
Confidence 44544 45677889999999999999997 579999999999999999988776653 77889
Q ss_pred EEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeeccc
Q 004404 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 611 tsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
++++|+|.++.+|++|+.|+.|++||+++++++ .+..+...|++++|+|++ ++|++|+.|++|+|||+.+++++..
T Consensus 230 ~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-- 307 (357)
T 4g56_B 230 TSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-- 307 (357)
T ss_dssp EEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE--
T ss_pred cchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE--
Confidence 999999955679999999999999999998766 445677899999999987 6799999999999999999887653
Q ss_pred cccccccccCCCCCeEEEEEcc-CCCeEEEEEECCCcEEEEEC
Q 004404 689 INLQNKKKRSHQRKITGFQFAP-GSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fsP-dg~~~L~sgs~Dg~IrVWD~ 730 (755)
.+|...|++|+|+| ++. +|++++.|++|++||.
T Consensus 308 --------~~H~~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 308 --------LSHRDFVTGVAWSPLDHS-KFTTVGWDHKVLHHHL 341 (357)
T ss_dssp --------CCCSSCEEEEEECSSSTT-EEEEEETTSCEEEEEC
T ss_pred --------CCCCCCEEEEEEeCCCCC-EEEEEcCCCeEEEEEC
Confidence 27999999999999 555 8999999999999994
No 19
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=306.21 Aligned_cols=282 Identities=18% Similarity=0.257 Sum_probs=221.8
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCce--eeeeecccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER--KGELLEKQE 499 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~--~~~l~~~~~ 499 (755)
.++++++.|+.|++|+...+.... ......+|...|.+|+|+|++++||+|+.|++|+||++..... ... .
T Consensus 29 ~~las~~~D~~i~iw~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~-----~ 101 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDSWIC--KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT-----L 101 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEE--EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEE-----E
T ss_pred CEEEEEcCCCeEEEEEcCCCccee--eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEE-----c
Confidence 346888999999999987554221 1122468999999999999999999999999999999876642 223 2
Q ss_pred cCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-
Q 004404 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd- 578 (755)
.+|...+..++|+|++.++++++.++.+.++...... ..+.+..+.+|...|.+++|+|+
T Consensus 102 ~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~-------------------~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 102 EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-------------------EYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS-------------------CEEEEEEECCCCSCEEEEEECSSS
T ss_pred cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC-------------------CeEEEEEecCcCCCeEEEEECCCC
Confidence 6788899999999999999999988887444322100 01245678899999999999998
Q ss_pred cEEEEEeCCCcEEEEECCCCc--EEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC---------------
Q 004404 579 QHLLSSSMDKTVRLWHLSSKT--CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--------------- 640 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~--~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~--------------- 640 (755)
.+|++++.|++|++||+..+. +..++. |...|++|+|+| ++++|++|+.|++|+||++...
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 789999999999999998875 345554 999999999999 9999999999999999996321
Q ss_pred cEE-Eecc-CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 641 QVV-DWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 641 ~~v-~~~~-~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
+++ .... |...|.+++|+|++..|++++.|+.|++|+.............+......+|...|++++|+|+++.+|++
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS 321 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence 112 2222 56789999999999999999999999999987654322211111112245899999999999998658999
Q ss_pred EECCCcEEEEEC
Q 004404 719 TSADSRIRVVDG 730 (755)
Q Consensus 719 gs~Dg~IrVWD~ 730 (755)
++.|++|+||+.
T Consensus 322 ~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 322 CSDDGEVAFWKY 333 (345)
T ss_dssp EETTSCEEEEEE
T ss_pred cCCCCcEEEEEe
Confidence 999999999993
No 20
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.9e-34 Score=313.75 Aligned_cols=304 Identities=18% Similarity=0.281 Sum_probs=237.7
Q ss_pred ccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCc
Q 004404 363 NNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD 442 (755)
Q Consensus 363 ~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~ 442 (755)
.|+.......+.++ +|...|.++++++++ ..+++|+.|++|++|+..+++
T Consensus 50 ~~~~~~~~~~~~l~-gH~~~V~~~~~sp~~-----------------------------~~l~s~s~D~~v~iWd~~~~~ 99 (380)
T 3iz6_a 50 SFNPTDLVCCRTLQ-GHSGKVYSLDWTPEK-----------------------------NWIVSASQDGRLIVWNALTSQ 99 (380)
T ss_dssp CCCCCCCEEEEEEC-CCSSCEEEEEECTTS-----------------------------SCEEEEETTSEEEEEETTTTE
T ss_pred ccccceeEEeeccc-ccccEEEEEEEcCCC-----------------------------CEEEEEeCCCeEEEEECCCCc
Confidence 45554444444444 566666666665532 346888999999999987554
Q ss_pred ccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeee-e-ecccccCccccEEEeecCCC-Cceec
Q 004404 443 LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE-L-LEKQEDGHLNMLLLANGSPE-PTSLS 519 (755)
Q Consensus 443 ~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~-l-~~~~~~~~~~~v~~v~~s~d-g~~l~ 519 (755)
....+.+|...|.+++|+|+|++||+|+.|+.|+||++.+...... . ......+|...+..+.+.|+ ...++
T Consensus 100 -----~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~ 174 (380)
T 3iz6_a 100 -----KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174 (380)
T ss_dssp -----EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred -----cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEE
Confidence 3456789999999999999999999999999999999975432111 0 11123567777888888886 45678
Q ss_pred cccCCCceeeecccccccccccccCcccccceeeecCCCceEEe-----ccCCCCEEEEEecC-C-cEEEEEeCCCcEEE
Q 004404 520 PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-----QGHLDDVLDLSWSK-S-QHLLSSSMDKTVRL 592 (755)
Q Consensus 520 ~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l-----~gH~~~V~~L~~sp-d-~~LaSgs~DgtVrL 592 (755)
+++.++.+.++... +++.+..+ .+|...|.+++|++ + .+|++|+.|++|++
T Consensus 175 s~s~D~~i~~wd~~----------------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~ 232 (380)
T 3iz6_a 175 TGSGDQTCVLWDVT----------------------TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232 (380)
T ss_dssp EECTTSCEEEECTT----------------------TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred EECCCCcEEEEEcC----------------------CCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence 88888877443322 23334444 68999999999987 4 78999999999999
Q ss_pred EECC-CCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC--------CCEEEEEEccCCC
Q 004404 593 WHLS-SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--------EMVTAACYTPDGQ 662 (755)
Q Consensus 593 WDl~-t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~--------~~VtsvafSPdG~ 662 (755)
||++ ..+++..+. |...|++++|+| ++.+|++|+.|++|+|||+++++.+.....+ ..|++++|+|+|+
T Consensus 233 wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 233 WDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR 311 (380)
T ss_dssp EETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred EECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC
Confidence 9998 456777775 999999999999 9999999999999999999999877654332 2489999999999
Q ss_pred EEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 663 GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 663 ~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+|++|+.||.|++||+..++....+. ....+|...|++++|+|++. +|++|+.|++|+||+.
T Consensus 312 ~l~~g~~dg~i~vwd~~~~~~~~~~~-----~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 312 LLFAGYSNGDCYVWDTLLAEMVLNLG-----TLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKIWAF 373 (380)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEEC-----CSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEEEEC
T ss_pred EEEEEECCCCEEEEECCCCceEEEEe-----cccCCCCCceEEEEECCCCC-EEEEeeCCCCEEEEec
Confidence 99999999999999999887765432 11248999999999999998 8999999999999993
No 21
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.1e-33 Score=295.02 Aligned_cols=268 Identities=15% Similarity=0.208 Sum_probs=230.3
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCc
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
.++++. ++.|++|+...++...........+|...|.+++|+|++++|++++.|+.|++|++.+++..... ....+
T Consensus 65 ~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~ 140 (337)
T 1gxr_A 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA---ELTSS 140 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE---EEECS
T ss_pred EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee---ecccC
Confidence 455666 99999999987665444433333489999999999999999999999999999999887632221 12456
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cE
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QH 580 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~ 580 (755)
...+..+.+++++..++++..++.+ .+|++ ..+.+..+.+|...|.+++|+|+ .+
T Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~v-----------------------~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 141 APACYALAISPDSKVCFSCCSDGNI-----------------------AVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCE-----------------------EEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcE-----------------------EEEeCCCCceeeeeecccCceEEEEECCCCCE
Confidence 6778999999999999988877776 34444 34567788899999999999998 68
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccC
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPd 660 (755)
|++++.|+.|++||+.+++.+..+.+...+.+++|+| ++++|++++.|+.|++||+.+++......+...|.+++|+|+
T Consensus 198 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 276 (337)
T 1gxr_A 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC 276 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTT
T ss_pred EEEEecCCcEEEEECCCCceEeeecCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCC
Confidence 9999999999999999999999999999999999999 999999999999999999999998888888999999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 661 GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 661 G~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+++|++++.||.|++||+.+++.... ..|...|++++|+|+++ +|++++.|+.|++||
T Consensus 277 ~~~l~~~~~dg~i~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 277 GKWFVSTGKDNLLNAWRTPYGASIFQ----------SKESSSVLSCDISVDDK-YIVTGSGDKKATVYE 334 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEE----------EECSSCEEEEEECTTSC-EEEEEETTSCEEEEE
T ss_pred CCEEEEecCCCcEEEEECCCCeEEEE----------ecCCCcEEEEEECCCCC-EEEEecCCCeEEEEE
Confidence 99999999999999999999887642 25788999999999998 899999999999998
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.5e-33 Score=296.35 Aligned_cols=266 Identities=17% Similarity=0.269 Sum_probs=224.8
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..+++++.|+.|++|+..++. ..+.+.+|..+|.+++|+|++++|++|+.|++|+|||+.+++....+ .+
T Consensus 26 ~~l~s~~~dg~v~lWd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-----~~ 95 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-----EA 95 (304)
T ss_dssp SEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-----EC
T ss_pred CEEEEEcCCCcEEEEECCCCc-----eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE-----eC
Confidence 356788999999999987554 34567899999999999999999999999999999999998877765 56
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC--CceEEeccCCCCEEEEEecCC-
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGHLDDVLDLSWSKS- 578 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~--k~i~~l~gH~~~V~~L~~spd- 578 (755)
|...+..+.++|++.++++++.++.+. +|++.. .....+.+|...|.+++|+|.
T Consensus 96 h~~~v~~~~~~~~~~~l~sgs~D~~v~-----------------------lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 96 HPDYIRSIAVHPTKPYVLSGSDDLTVK-----------------------LWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEE-----------------------EEEGGGTTEEEEEECCCCSCEEEEEECTTC
T ss_pred CCCcEEEEEEcCCCCEEEEECCCCeEE-----------------------EEECCCCcchhhhhcccCCcEEEEEECCCC
Confidence 788999999999999999999998884 444322 345678899999999999994
Q ss_pred -cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeC-CCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEE
Q 004404 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVT 653 (755)
Q Consensus 579 -~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~-dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~Vt 653 (755)
..|++|+.|++|++||+.++.....+. |...|..+.|+|. ++.+|++|+.|++|+|||+++++++. +..|...|.
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~ 232 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS 232 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEE
Confidence 689999999999999998877665553 6788999999873 56799999999999999999998774 556778999
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeE-EEEEECCCcEEEEEC
Q 004404 654 AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE-VLVTSADSRIRVVDG 730 (755)
Q Consensus 654 svafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~-L~sgs~Dg~IrVWD~ 730 (755)
+++|+|++++|++|+.||.|++||+.++++...+ ..|...+.+++|+|++... +++|+ |..+.+|+.
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~ 300 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL---------NVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSL 300 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE---------CCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEEC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeec---------cCCCccEEEEEECCCCCceEEEEec-CCceEEEEe
Confidence 9999999999999999999999999998887654 3788899999999988644 55554 556777764
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-32 Score=298.37 Aligned_cols=277 Identities=16% Similarity=0.239 Sum_probs=223.1
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccc--eeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTA--LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~--~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
.++++|+.|+.|++|++...+... ......+.+|...|++++|+|++.+|+||+.|++|+|||+.+++....+
T Consensus 40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~----- 114 (343)
T 2xzm_R 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF----- 114 (343)
T ss_dssp CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE-----
T ss_pred CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE-----
Confidence 567899999999999987654321 2344678899999999999999999999999999999999998877665
Q ss_pred cCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEe---ccCCCCEEEEEec
Q 004404 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF---QGHLDDVLDLSWS 576 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l---~gH~~~V~~L~~s 576 (755)
.+|...+..+.++|++..++++..++.+. +|++.......+ .+|...|.+++|+
T Consensus 115 ~~h~~~v~~v~~sp~~~~l~s~~~d~~i~-----------------------~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 171 (343)
T 2xzm_R 115 VGHQSEVYSVAFSPDNRQILSAGAEREIK-----------------------LWNILGECKFSSAEKENHSDWVSCVRYS 171 (343)
T ss_dssp ECCCSCEEEEEECSSTTEEEEEETTSCEE-----------------------EEESSSCEEEECCTTTSCSSCEEEEEEC
T ss_pred cCCCCcEEEEEECCCCCEEEEEcCCCEEE-----------------------EEeccCCceeeeecccCCCceeeeeeec
Confidence 56788999999999999999998888874 444433333333 3789999999999
Q ss_pred CC-----------cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-CcEE
Q 004404 577 KS-----------QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVV 643 (755)
Q Consensus 577 pd-----------~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-~~~v 643 (755)
|+ .+|++++.|++|++||. ..+....+. |...|++++|+| ++++|++|+.|++|+|||+.. ....
T Consensus 172 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~~ 249 (343)
T 2xzm_R 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQ 249 (343)
T ss_dssp CCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred cccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCcccc
Confidence 97 37999999999999994 456666665 999999999999 999999999999999999944 4444
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccccc----ccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL----QNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 644 ~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~----~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
....+...|.+++|+|++++|++|. |+.|++|++.+++......+.. ......+|...|++++|+|+++ +|++|
T Consensus 250 ~~~~~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg 327 (343)
T 2xzm_R 250 REFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK-KLFAG 327 (343)
T ss_dssp EEEECSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC-CEEEE
T ss_pred eeecCCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC-eEEEe
Confidence 4445567799999999998887664 7889999998876543111110 0112247888999999999998 89999
Q ss_pred ECCCcEEEEEC
Q 004404 720 SADSRIRVVDG 730 (755)
Q Consensus 720 s~Dg~IrVWD~ 730 (755)
+.|++|++|+.
T Consensus 328 ~~Dg~v~~w~~ 338 (343)
T 2xzm_R 328 FTDGVIRTFSF 338 (343)
T ss_dssp ETTSEEEEEEE
T ss_pred cCCceEEEEEE
Confidence 99999999983
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=295.98 Aligned_cols=282 Identities=21% Similarity=0.249 Sum_probs=212.5
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEe-ec-ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCcee---e
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI-QA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK---G 492 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l-~g-H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~---~ 492 (755)
..++.++++|+.|++|++|++..+... ....+ .+ |.+.|++|+|+|++++||+|+.|++|+||++...... .
T Consensus 21 ~~s~~~las~~~D~~i~lw~~~~~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~ 97 (330)
T 2hes_X 21 DFSQGILATGSTDRKIKLVSVKYDDFT---LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEM 97 (330)
T ss_dssp EEETTEEEEEESSSCEEEEECSSSCCE---EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCC
T ss_pred ccCCCEEEEEcCCCEEEEEEecCCCeE---EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccc
Confidence 333447899999999999999765432 22334 34 9999999999999999999999999999998543210 0
Q ss_pred eeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEE
Q 004404 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572 (755)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~ 572 (755)
.. .....+|...+..+.|+|++.++++++.++.+.++...... ...+++..+.+|...|.+
T Consensus 98 ~~-~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~------------------~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 98 DL-LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG------------------EEYECISVLQEHSQDVKH 158 (330)
T ss_dssp EE-EEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC------------------CCCEEEEEECCCSSCEEE
T ss_pred ee-EEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC------------------CCeEEEEEeccCCCceEE
Confidence 11 11135788899999999999999999998888444321100 012356778999999999
Q ss_pred EEecCC-cEEEEEeCCCcEEEEECCCC--cEEEEee-cCCceEEEEEeeCC--CcEEEEEECCCcEEEEECCCC------
Q 004404 573 LSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPER------ 640 (755)
Q Consensus 573 L~~spd-~~LaSgs~DgtVrLWDl~t~--~~~~~~~-h~~~VtsVafsP~d--g~~LaSgS~DgtVrIWDl~t~------ 640 (755)
++|+|+ .+|++++.|++|++||+.++ +++..+. |...|.+++|+| + +.+|++|+.|++|+|||+.++
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence 999998 78999999999999998776 6777775 999999999999 6 678999999999999998654
Q ss_pred --cEEEec-c-CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCC-CeEEEEEcc--CCC
Q 004404 641 --QVVDWN-D-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR-KITGFQFAP--GSS 713 (755)
Q Consensus 641 --~~v~~~-~-~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~-~Vtsl~fsP--dg~ 713 (755)
.+.... . |...|.+++|++++ +|++++.||.|++|++.++...... ....+|.. .|++++|+| ++.
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~------~~~~~h~~~~v~~v~~~~~~~~~ 310 (330)
T 2hes_X 238 EWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFA------KRALCHGVYEINVVKWLELNGKT 310 (330)
T ss_dssp EEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEE------EESCTTTTSCEEEEEEC-----C
T ss_pred eeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEe------ccccccccceEEEEEEecCCCce
Confidence 233332 2 67899999999765 8999999999999999876422111 11236776 899999999 565
Q ss_pred eEEEEEECCCcEEEEEC
Q 004404 714 SEVLVTSADSRIRVVDG 730 (755)
Q Consensus 714 ~~L~sgs~Dg~IrVWD~ 730 (755)
+|++++.|++|+|||.
T Consensus 311 -~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 311 -ILATGGDDGIVNFWSL 326 (330)
T ss_dssp -CEEEEETTSEEEEEEC
T ss_pred -EEEEecCCCcEEEEEe
Confidence 7999999999999995
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.6e-32 Score=287.30 Aligned_cols=264 Identities=24% Similarity=0.404 Sum_probs=227.3
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
...+.+|.+.|++++|+|++++|++|+.||.|+||++.+++....+ .+|...+..+.++|++.+++++..++.+.
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-----SGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-----ccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 4567899999999999999999999999999999999888766654 56778899999999999999998888773
Q ss_pred eecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~- 605 (755)
+|++ +++.+..+.+|...|.+++|+|+ .+|++++.|++|++||+.+++++..+.
T Consensus 91 -----------------------vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 147 (312)
T 4ery_A 91 -----------------------IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 147 (312)
T ss_dssp -----------------------EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred -----------------------EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC
Confidence 4444 34667889999999999999998 789999999999999999999998886
Q ss_pred cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec--cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCee
Q 004404 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~--~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~ 683 (755)
|..+|.+++|+| ++++|++++.|+.|++||+++++.+... .+...+..++|+|++++|++++.||.|++||+.+++.
T Consensus 148 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 148 HSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226 (312)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred CCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 899999999999 9999999999999999999998877443 3456899999999999999999999999999999887
Q ss_pred eeccccccccccccCCCCCe--EEEEEc-cCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 684 QQKSPINLQNKKKRSHQRKI--TGFQFA-PGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~V--tsl~fs-Pdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
...+. +|...+ ....|+ +++. +|++++.|+.|++|| .++++..+.+|...|+.++|.|
T Consensus 227 ~~~~~---------~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p 289 (312)
T 4ery_A 227 LKTYT---------GHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 289 (312)
T ss_dssp EEEEC---------SSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS
T ss_pred EEEEE---------ecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC
Confidence 76532 444332 223444 4554 899999999999999 5788999999999999998854
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.4e-32 Score=295.48 Aligned_cols=224 Identities=19% Similarity=0.273 Sum_probs=189.2
Q ss_pred ecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecc
Q 004404 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (755)
Q Consensus 453 ~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~ 532 (755)
..|...|.+++|+|++ +|++|+.||+|+|||+.+++....+
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~-------------------------------------- 119 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVS-------------------------------------- 119 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEE--------------------------------------
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEe--------------------------------------
Confidence 3577899999999985 6889999999999999776533221
Q ss_pred cccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCce
Q 004404 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYV 610 (755)
Q Consensus 533 ~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~V 610 (755)
...+.+|...|++|+|+|+ .+|++|+.|++|+|||+.+++++.++. |...|
T Consensus 120 ---------------------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 120 ---------------------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp ---------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred ---------------------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 1235689999999999998 789999999999999999999999996 99999
Q ss_pred EEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc---CCCCEEEEEEccC-CCEEEEEECCCcEEEEECCCCeeeec
Q 004404 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND---LHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 611 tsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~---~~~~VtsvafSPd-G~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
++++|+|.+..+|++|+.|++|+|||+++++....+. +...+++++|+|+ +++|++|+.||.|+|||+++++.+..
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred EEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence 9999999334689999999999999999988775443 3457999999995 57889999999999999999887664
Q ss_pred cccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC-CcceEEeecCCccEEEEEEEE
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG-IDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~-~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+ .+|...|++++|+|++..+|++++.|++|+|||. ...+.++.+|.+.|++++|+|
T Consensus 253 ~---------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 253 S---------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSP 309 (344)
T ss_dssp E---------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECS
T ss_pred E---------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeC
Confidence 3 4899999999999998668999999999999993 334556899999999999975
No 27
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.1e-33 Score=306.39 Aligned_cols=283 Identities=20% Similarity=0.334 Sum_probs=232.6
Q ss_pred eeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCC
Q 004404 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (755)
Q Consensus 446 ~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~ 525 (755)
..+.+.|.+|.+.|++++|+|++++|+||+.|++|+|||+.+++....+ ..|...+..++++|++..++++..++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-----~~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-----KLHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-----ECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-----ecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 3445678999999999999999999999999999999999988877665 45667788899999999999999998
Q ss_pred ceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEE
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKI 603 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~ 603 (755)
.+.++........ .........+.+|.+.|.++.|.|+ ..|++|+.|++|++||+.+++++..
T Consensus 131 ~v~iw~~~~~~~~---------------~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 131 ACSIFNLSSQADR---------------DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CCEEEECCCCSSC---------------CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred cEEEEECCCCccc---------------cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 8865543321100 0011234567899999999999996 5799999999999999999999888
Q ss_pred e------ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-CcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 004404 604 F------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (755)
Q Consensus 604 ~------~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~l 675 (755)
+ .|...|.+++|+|.++++|++|+.|++|++||++. .+.+ .+..|...|++++|+|++++|++|+.||.|++
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~l 275 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEE
T ss_pred eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEE
Confidence 7 28889999999876789999999999999999974 3443 56678889999999999999999999999999
Q ss_pred EECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEe----ecCCccEEEEEE
Q 004404 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKF----KGENYVQYMVCI 749 (755)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~----~GH~~~V~sv~f 749 (755)
||+.+++.+..+.... .....+...|++++|+|+|. +|++|+.|+.|+||| .++.+..+ .+|...|.+++|
T Consensus 276 wd~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 276 FDMRTGHQLQVYNREP--DRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp EETTTTEEEEEECCCC--SSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred EECCCCcEEEEecccc--cccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 9999998876543211 11123445689999999998 899999999999999 46677777 689999999998
Q ss_pred EE
Q 004404 750 VL 751 (755)
Q Consensus 750 s~ 751 (755)
+|
T Consensus 353 s~ 354 (380)
T 3iz6_a 353 SS 354 (380)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 28
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.8e-32 Score=296.77 Aligned_cols=273 Identities=24% Similarity=0.356 Sum_probs=224.4
Q ss_pred cccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccc-------------cCccccEEEeecCCCCceecc
Q 004404 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE-------------DGHLNMLLLANGSPEPTSLSP 520 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~-------------~~~~~~v~~v~~s~dg~~l~~ 520 (755)
+|.+.|++++|+|||++||+|+ +++|+||++.+++....+..... ..+...+..+.|+|++.++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 78999999998887665532110 012234789999999999999
Q ss_pred ccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCC
Q 004404 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (755)
Q Consensus 521 ~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~ 598 (755)
+..++.+ .+|++ +.+.+..+.+|...|++++|+|+ .+|++++.|++|++||+.++
T Consensus 141 ~~~d~~i-----------------------~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~ 197 (393)
T 1erj_A 141 GAEDRLI-----------------------RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197 (393)
T ss_dssp EETTSCE-----------------------EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred EcCCCeE-----------------------EEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence 9888887 45554 34566788999999999999998 78999999999999999999
Q ss_pred cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec--------cCCCCEEEEEEccCCCEEEEEECC
Q 004404 599 TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--------DLHEMVTAACYTPDGQGALVGSYK 670 (755)
Q Consensus 599 ~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~--------~~~~~VtsvafSPdG~~LasGs~D 670 (755)
++...+.+...+.+++|+|.++++|++|+.|++|++||+.++.++... .|...|++++|+|+|++|++|+.|
T Consensus 198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 198 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 999999989999999999977899999999999999999998876443 567899999999999999999999
Q ss_pred CcEEEEECCCCeeeecccc---ccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEE
Q 004404 671 GSCHLYNTSENKLQQKSPI---NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQY 745 (755)
Q Consensus 671 G~I~lwDl~~~~~~~~~~i---~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~ 745 (755)
+.|++||+........... ......+.+|...|++++|+|++. +|++++.|++|++|| .++++..+.+|.+.|+
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~ 356 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE
Confidence 9999999987543221100 001123458999999999999998 899999999999999 5788999999999999
Q ss_pred EEEEEE
Q 004404 746 MVCIVL 751 (755)
Q Consensus 746 sv~fs~ 751 (755)
++++.+
T Consensus 357 ~v~~~~ 362 (393)
T 1erj_A 357 SVAVAN 362 (393)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 999863
No 29
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-33 Score=352.32 Aligned_cols=435 Identities=15% Similarity=0.154 Sum_probs=331.7
Q ss_pred ccceeeeccCCCceeEEeccccCCccceeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc---cccCCCCCccccccCC
Q 004404 290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGS 366 (755)
Q Consensus 290 ~~~~~i~~ld~g~~~~~~e~~~dG~~~~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~ 366 (755)
+..++++--.+|+.++.-. .||. -++|++.+++.+ ..+.||...|..++|+++ +++++.|++|+ +||.
T Consensus 616 ~~v~~~~~s~~~~~l~s~~--~d~~-i~vw~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~-vwd~ 686 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCG--ADKT-LQVFKAETGEKL-----LDIKAHEDEVLCCAFSSDDSYIATCSADKKVK-IWDS 686 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEE--TTSC-EEEEETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEET
T ss_pred ccEEEEEECCCCCEEEEEe--CCCe-EEEEECCCCCEE-----EEeccCCCCEEEEEEecCCCEEEEEeCCCeEE-EEEC
Confidence 3355555334566555432 2554 468999999988 678899999999999998 89999999999 9999
Q ss_pred CCCCccccccCCcccccceeEEeecccc-------ccccCccccCCc------cCCCceeeeeec--CCCcEEEEeCCCc
Q 004404 367 SGGGMKSKKKGSWFKSIRTVASSVTGHK-------ERRSSDERDTSS------EKGGRRSSSATD--DSQDVSFHGQERV 431 (755)
Q Consensus 367 ~~g~~~~k~k~~~~~~v~sv~~s~~g~~-------~~~~~~~~~~~~------~~g~~~~vs~~~--ds~~~l~sg~~dg 431 (755)
.+|.....+. +|...+..+++++++.. .......|+... ..++...+.+.. .....+++++.++
T Consensus 687 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg 765 (1249)
T 3sfz_A 687 ATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG 765 (1249)
T ss_dssp TTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred CCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence 9998877776 78888988888874322 111222343222 223333333322 2334688999999
Q ss_pred EEEEeeCCCCccccee-------------------------------------------------eeeEe-ecccCCEEE
Q 004404 432 RVRQYGKSCKDLTALY-------------------------------------------------KCQEI-QAHNGSIWS 461 (755)
Q Consensus 432 ~Vriwd~~~~~~~~~~-------------------------------------------------~~q~l-~gH~~~I~s 461 (755)
.|++|+...++..... ....+ .+|...|.+
T Consensus 766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~ 845 (1249)
T 3sfz_A 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845 (1249)
T ss_dssp EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence 9999998765322111 01112 389999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccccc------
Q 004404 462 IKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS------ 535 (755)
Q Consensus 462 I~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~------ 535 (755)
++|+|+++++++++.||.|++|++.++.....+ .+|...+..+.++|++..+++++.++.+..+.....
T Consensus 846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~-----~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADC-----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp EEECSSTTEEEEECSSSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec-----CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee
Confidence 999999999999999999999999988776665 578889999999999999999999988877653210
Q ss_pred -------------------------------------------ccccccccCcccc-------cceeeec-CCCceEEec
Q 004404 536 -------------------------------------------INRKSLSLDHMVV-------PETVFAL-SDKPICSFQ 564 (755)
Q Consensus 536 -------------------------------------------~~~~s~s~d~~~~-------~~~v~~~-s~k~i~~l~ 564 (755)
+....++.+...+ .-.+|+. .++.+..+.
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 0111111111111 0134444 456777888
Q ss_pred cCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE
Q 004404 565 GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (755)
Q Consensus 565 gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v 643 (755)
+|...|++++|+|+ .+|++++.|++|++||+.++++.....|...|.+++|+| + ..+++++.|++|++||+.++++.
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ-D-SRLLSWSFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECS-S-SEEEEEESSSEEEEEETTTTCCC
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcC-C-CcEEEEECCCcEEEEECCCCcee
Confidence 99999999999998 689999999999999999999887777999999999998 5 46789999999999999998876
Q ss_pred -EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC
Q 004404 644 -DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (755)
Q Consensus 644 -~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D 722 (755)
.+..|...|++++|+|++++|++++.||.|++||+.++..... +.+|...|++++|+|++. +|++++.|
T Consensus 1079 ~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~---------l~~h~~~v~~~~~s~dg~-~lat~~~d 1148 (1249)
T 3sfz_A 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE---------LKGHNGCVRCSAFSLDGI-LLATGDDN 1148 (1249)
T ss_dssp EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC---------CCCCSSCEEEEEECSSSS-EEEEEETT
T ss_pred EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee---------eccCCCcEEEEEECCCCC-EEEEEeCC
Confidence 4556778999999999999999999999999999998876654 348999999999999998 89999999
Q ss_pred CcEEEEE--CCcceEEe---------ecCCccEEEEEEEE
Q 004404 723 SRIRVVD--GIDLVHKF---------KGENYVQYMVCIVL 751 (755)
Q Consensus 723 g~IrVWD--~~~ll~~~---------~GH~~~V~sv~fs~ 751 (755)
|+|+||| .++++..+ .+|...|.+++|++
T Consensus 1149 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 1188 (1249)
T 3sfz_A 1149 GEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP 1188 (1249)
T ss_dssp SCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECT
T ss_pred CEEEEEECCCCceEEEeccccccccccccCceEEEEEECC
Confidence 9999999 45555554 78999999998864
No 30
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.6e-31 Score=282.09 Aligned_cols=265 Identities=19% Similarity=0.372 Sum_probs=225.7
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..+++++.|+.|++|+...++. .+.+.+|...|.+++|+|++++|++|+.|+.|+|||+.+++....+ .+
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-----~~ 105 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDGKF-----EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-----KG 105 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCE-----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----EC
T ss_pred CEEEEeeCCCeEEEEeCCCccc-----chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE-----cC
Confidence 4578889999999999876553 3456799999999999999999999999999999999988877665 56
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-c
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q 579 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~ 579 (755)
|...+..+.++|++.+++++..++.+ .+|++ +++.+..+..|...|.+++|+|+ .
T Consensus 106 ~~~~v~~~~~~~~~~~l~s~~~d~~i-----------------------~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (312)
T 4ery_A 106 HSNYVFCCNFNPQSNLIVSGSFDESV-----------------------RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162 (312)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCE-----------------------EEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcE-----------------------EEEECCCCEEEEEecCCCCcEEEEEEcCCCC
Confidence 77889999999999999999888877 44544 34667888999999999999998 7
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-CCCC---EE
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEM---VT 653 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-~~~~---Vt 653 (755)
+|++++.|+.|++||+.+++++..+. +...+.+++|+| ++++|++++.|+.|++||+.+++++.... +... +.
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 241 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCC
T ss_pred EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEE
Confidence 89999999999999999999888774 677899999999 99999999999999999999998775443 3332 22
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE--CCCcEEEEEC
Q 004404 654 AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVDG 730 (755)
Q Consensus 654 svafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs--~Dg~IrVWD~ 730 (755)
.....+++.+|++|+.||.|++||+.+++....+ .+|...|.+++|+|+++ +|++++ .|++|+||+.
T Consensus 242 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---------~~h~~~v~~~~~~p~~~-~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL---------QGHTDVVISTACHPTEN-IIASAALENDKTIKLWKS 310 (312)
T ss_dssp EEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE---------CCCSSCEEEEEECSSSS-EEEEEECTTTCCEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh---------hccCCcEEEEeecCcCC-ceEEEEccCCccEEEecC
Confidence 3334467899999999999999999998877653 48999999999999998 788886 6999999984
No 31
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-32 Score=301.03 Aligned_cols=291 Identities=20% Similarity=0.209 Sum_probs=213.1
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC------CCcEEEEeCcCCceeeeee
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE------DCVIHVWQVVESERKGELL 495 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~------DGtVrVWdl~t~~~~~~l~ 495 (755)
.+++.+..+.+...|++... ...+|+..|++|+|+|||++||||+. |+.|++|+..++.....+.
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~---------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~ 87 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVT---------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLC 87 (357)
T ss_dssp --------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGC
T ss_pred ceEEecCCCccccccCCCCC---------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEe
Confidence 34566667788888976422 23479999999999999999999998 7789999987776544432
Q ss_pred cccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEe
Q 004404 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (755)
Q Consensus 496 ~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~ 575 (755)
. ...++...+..++|+|++.+++++ .++.+.++....... .........+|...|++|+|
T Consensus 88 ~-~~~~~~~~V~~~~~s~d~~~l~~s-~dg~v~lWd~~~~~~------------------~~~~~~~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 88 T-AGVQTEAGVTDVAWVSEKGILVAS-DSGAVELWEILEKES------------------LLVNKFAKYEHDDIVKTLSV 147 (357)
T ss_dssp S-EEEECSSCEEEEEEETTTEEEEEE-TTSCEEEC--------------------------CCCCEEECCCSSCEEEEEE
T ss_pred c-ccCCCCCCEEEEEEcCCCCEEEEE-CCCEEEEeeccccce------------------eEEEeeccCCCCCCEEEEEE
Confidence 1 123466778999999998877654 556664332211000 00112345689999999999
Q ss_pred cCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe---ccCCC
Q 004404 576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW---NDLHE 650 (755)
Q Consensus 576 spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~---~~~~~ 650 (755)
+|+ .+|++++.|++|++||+.+++++..+. |...|++++|+|....+|++++.|++|+|||+++++.... ..+..
T Consensus 148 spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~ 227 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT 227 (357)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc
Confidence 998 789999999999999999999999987 9999999999993345899999999999999999876543 34556
Q ss_pred CEEEEEEccC-CCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 651 MVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 651 ~VtsvafSPd-G~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.+++++|+|+ +.+|++|+.|+.|++||+.+++....+ .+|...|++++|+|++..+|++++.|++|+|||
T Consensus 228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---------~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---------AVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---------CCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred cccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---------eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 8999999997 478999999999999999988766543 489999999999999866899999999999999
Q ss_pred --CCcceEEeecCCccEEEEEEEE
Q 004404 730 --GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 730 --~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
.+++++ +.+|...|++++|+|
T Consensus 299 ~~~~~~~~-~~~H~~~V~~vafsP 321 (357)
T 4g56_B 299 ADFSEVFR-DLSHRDFVTGVAWSP 321 (357)
T ss_dssp TTSCEEEE-ECCCSSCEEEEEECS
T ss_pred CCCCcEeE-ECCCCCCEEEEEEeC
Confidence 455555 458999999999976
No 32
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-31 Score=317.60 Aligned_cols=282 Identities=18% Similarity=0.287 Sum_probs=234.6
Q ss_pred CCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccc
Q 004404 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (755)
Q Consensus 419 ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~ 498 (755)
+...++++|+.|+.|++|++...........+.+.+|...|.+++|+|++++|+||+.||+|+|||+.+++....+
T Consensus 393 ~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~---- 468 (694)
T 3dm0_A 393 DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF---- 468 (694)
T ss_dssp TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE----
Confidence 3456789999999999999976554434445678899999999999999999999999999999999988777665
Q ss_pred ccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEe----ccCCCCEEEEE
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF----QGHLDDVLDLS 574 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l----~gH~~~V~~L~ 574 (755)
.+|...+..+.++|++..+++++.++.+.++ +........+ .+|...|.+++
T Consensus 469 -~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw-----------------------d~~~~~~~~~~~~~~~h~~~v~~~~ 524 (694)
T 3dm0_A 469 -VGHTKDVLSVAFSLDNRQIVSASRDRTIKLW-----------------------NTLGECKYTISEGGEGHRDWVSCVR 524 (694)
T ss_dssp -ECCSSCEEEEEECTTSSCEEEEETTSCEEEE-----------------------CTTSCEEEEECSSTTSCSSCEEEEE
T ss_pred -eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE-----------------------ECCCCcceeeccCCCCCCCcEEEEE
Confidence 5788899999999999999999999888544 3332222222 47999999999
Q ss_pred ecCC---cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCC
Q 004404 575 WSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650 (755)
Q Consensus 575 ~spd---~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~ 650 (755)
|+|+ ..|++++.|++|++||+.++++...+. |...|++++|+| ++++|++|+.|++|+|||+.+++.+....++.
T Consensus 525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~ 603 (694)
T 3dm0_A 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603 (694)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCSS
T ss_pred EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCC
Confidence 9997 479999999999999999999988886 999999999999 99999999999999999999999888777888
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccc----------cccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK----------KKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 651 ~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~----------~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
.|.+++|+|++.+|++++ ++.|+|||+.++..+..+....... ....+...|++++|+|+|. +|++|+
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs 681 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGY 681 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSS-EEEEEE
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC-EEEEEc
Confidence 999999999998888776 5669999999998876554322110 0112223588999999998 899999
Q ss_pred CCCcEEEEECC
Q 004404 721 ADSRIRVVDGI 731 (755)
Q Consensus 721 ~Dg~IrVWD~~ 731 (755)
.||+|+|||..
T Consensus 682 ~Dg~i~iW~i~ 692 (694)
T 3dm0_A 682 TDGVIRVWGIG 692 (694)
T ss_dssp TTSEEEEEEC-
T ss_pred CCCeEEEEecc
Confidence 99999999954
No 33
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-33 Score=353.35 Aligned_cols=441 Identities=16% Similarity=0.174 Sum_probs=319.4
Q ss_pred ceeeeccCCCceeEEeccccCCccceeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc-----cccCCCCCccccccCC
Q 004404 292 GCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN-----VEEGNKDSFDLNNNGS 366 (755)
Q Consensus 292 ~~~i~~ld~g~~~~~~e~~~dG~~~~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~-----~~sgs~D~tv~~~Wd~ 366 (755)
..++.--.+|+.++... .||. -++|++.+|+.+ ..+.+|...|..++|.++ +++|+.|++|+ +||.
T Consensus 660 v~~~~~s~~~~~l~s~~--~d~~-v~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~-vwd~ 730 (1249)
T 3sfz_A 660 VLCCAFSSDDSYIATCS--ADKK-VKIWDSATGKLV-----HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK-LWDL 730 (1249)
T ss_dssp EEEEEECTTSSEEEEEE--TTSE-EEEEETTTCCEE-----EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE-EEET
T ss_pred EEEEEEecCCCEEEEEe--CCCe-EEEEECCCCceE-----EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE-EEEC
Confidence 34444334555555533 2444 568999999988 678899999999999884 78999999999 9999
Q ss_pred CCCCccccccCCcccccceeEEeecccccccc-----CccccCCc--------------------------------cCC
Q 004404 367 SGGGMKSKKKGSWFKSIRTVASSVTGHKERRS-----SDERDTSS--------------------------------EKG 409 (755)
Q Consensus 367 ~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~-----~~~~~~~~--------------------------------~~g 409 (755)
.++.....+. +|...|..+++++++...... ...|+... .++
T Consensus 731 ~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1249)
T 3sfz_A 731 NQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809 (1249)
T ss_dssp TSSSEEEEEC-CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT
T ss_pred CCcchhheec-CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC
Confidence 9988777776 788889999988876442111 11222110 011
Q ss_pred Cceee-------------------------------eeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCC
Q 004404 410 GRRSS-------------------------------SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS 458 (755)
Q Consensus 410 ~~~~v-------------------------------s~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~ 458 (755)
+..++ .+.......++++..++.|++|+..++. ....+.+|.+.
T Consensus 810 g~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~h~~~ 884 (1249)
T 3sfz_A 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-----KVADCRGHLSW 884 (1249)
T ss_dssp SSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-----EEEEECCCSSC
T ss_pred CCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----eeeecCCCccc
Confidence 11111 1111223457788889999999987543 34567899999
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeee----------------------------ec----ccccCccccE
Q 004404 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL----------------------------LE----KQEDGHLNML 506 (755)
Q Consensus 459 I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l----------------------------~~----~~~~~~~~~v 506 (755)
|++++|+|++++|++++.||+|++|++.+......+ .. .........+
T Consensus 885 v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 964 (1249)
T 3sfz_A 885 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV 964 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcE
Confidence 999999999999999999999999997542111000 00 0001123456
Q ss_pred EEeecCCCCceeccccCCCc--ee--------eec--ccccccccccccCccccc-------ceeeecCCCceEEeccCC
Q 004404 507 LLANGSPEPTSLSPKHLDNH--LE--------KKR--RGRSINRKSLSLDHMVVP-------ETVFALSDKPICSFQGHL 567 (755)
Q Consensus 507 ~~v~~s~dg~~l~~~s~d~~--i~--------~~~--~~~~~~~~s~s~d~~~~~-------~~v~~~s~k~i~~l~gH~ 567 (755)
..+.++|++..++++..++. +. ... ....+....++.+...+. -.+|++.......+.+|.
T Consensus 965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1044 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQ 1044 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCS
T ss_pred EEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCC
Confidence 77888888888887765531 11 111 111222233333332211 256777666666778999
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-Ee
Q 004404 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DW 645 (755)
Q Consensus 568 ~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~ 645 (755)
..|.+++|+|++.+++++.|++|++||+.+++++..+. |...|++++|+| ++++|++++.|++|++||+.+++++ .+
T Consensus 1045 ~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l 1123 (1249)
T 3sfz_A 1045 ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHEL 1123 (1249)
T ss_dssp SCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECS-SSSSCEEECCSSCCCEECSSSSSCSBCC
T ss_pred CcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCcceeeee
Confidence 99999999999999999999999999999999988887 999999999999 9999999999999999999988766 34
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcE
Q 004404 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (755)
Q Consensus 646 ~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~I 725 (755)
..|...|++++|+|+|++|++|+.||.|++||+.+++....+...........|...|++++|+|++. +|++++ |.|
T Consensus 1124 ~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~-~l~s~~--g~v 1200 (1249)
T 3sfz_A 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSK-TLVSAG--GYL 1200 (1249)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSS-CEEEES--SSE
T ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCC-EEEECC--CeE
Confidence 45778999999999999999999999999999999887765421111122347899999999999998 677764 899
Q ss_pred EEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 726 RVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 726 rVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
++|| .++.+..+.+|...+.+++|++
T Consensus 1201 ~vwd~~~g~~~~~~~~~~~~i~~~~~s~ 1228 (1249)
T 3sfz_A 1201 KWWNVATGDSSQTFYTNGTNLKKIHVSP 1228 (1249)
T ss_dssp EEBCSSSCBCCCCCCCSSCCCCCCEECS
T ss_pred EEEECCCCceeeeeeccCCcccEEEECC
Confidence 9999 5788899999999888888764
No 34
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.3e-32 Score=292.07 Aligned_cols=279 Identities=19% Similarity=0.299 Sum_probs=222.8
Q ss_pred eeeeeEeecccC-CEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCC
Q 004404 446 LYKCQEIQAHNG-SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (755)
Q Consensus 446 ~~~~q~l~gH~~-~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d 524 (755)
+...+.+.+|.+ .|++|+|+|+|++||||+.|++|+||++.++....... ...+|...+..++|+|++.++++++.+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~--~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV--LSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE--ECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee--eccccCCcEEEEEECCCCCEEEEEECC
Confidence 345677889998 99999999999999999999999999998765432211 135788899999999999999999888
Q ss_pred CceeeecccccccccccccCcccccceeeecCC---CceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCc-
Q 004404 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT- 599 (755)
Q Consensus 525 ~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~---k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~- 599 (755)
+.+.+ |.... +.+..+.+|...|.+++|+|+ .+|++++.|++|++||+..+.
T Consensus 83 ~~v~i-----------------------w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 83 ATTCI-----------------------WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp SCEEE-----------------------EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred CcEEE-----------------------EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 88743 33322 346788999999999999998 789999999999999998763
Q ss_pred --EEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE---EeccCCCCEEEEEEccCCCEEEEEECCCcE
Q 004404 600 --CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV---DWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (755)
Q Consensus 600 --~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v---~~~~~~~~VtsvafSPdG~~LasGs~DG~I 673 (755)
++..+. |...|.+++|+| ++++|++++.|++|++||+.++... .+..|...|++++|+|+|++|++|+.|+.|
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v 218 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeE
Confidence 445554 999999999999 9999999999999999999887533 456778899999999999999999999999
Q ss_pred EEEECCCCeeeeccccc------cccccc-cCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--C----c-----ceE
Q 004404 674 HLYNTSENKLQQKSPIN------LQNKKK-RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--I----D-----LVH 735 (755)
Q Consensus 674 ~lwDl~~~~~~~~~~i~------~~~~~~-~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~----~-----ll~ 735 (755)
+||++............ .....+ ..|...|.+++|+|++. .|++++.|+.|+||+. . . ...
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 99997432211110000 000111 23889999999999998 7999999999999982 1 1 123
Q ss_pred EeecCCccEEEEEEEE
Q 004404 736 KFKGENYVQYMVCIVL 751 (755)
Q Consensus 736 ~~~GH~~~V~sv~fs~ 751 (755)
.+.+|...|++++|.|
T Consensus 298 ~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNP 313 (345)
T ss_dssp ETTSSSSCEEEEEECS
T ss_pred ecccccCcEeEeEEeC
Confidence 3468999999999975
No 35
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=334.87 Aligned_cols=438 Identities=9% Similarity=-0.005 Sum_probs=286.8
Q ss_pred ceeeeccCCCceeEEeccccCCccceeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc--cccCCCCCccccccCCCCC
Q 004404 292 GCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN--VEEGNKDSFDLNNNGSSGG 369 (755)
Q Consensus 292 ~~~i~~ld~g~~~~~~e~~~dG~~~~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~--~~sgs~D~tv~~~Wd~~~g 369 (755)
..+++==-+|+.+++-. .||. -+||+..+++.+ ...+|...|..|+|.++ +++++.|++|+ +||..++
T Consensus 20 V~~lafspdg~~lAsgs--~Dg~-I~lw~~~~~~~~------~~~~~~~~V~~l~fspg~~L~S~s~D~~v~-lWd~~~~ 89 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIAT--VTGE-VHIYGQQQVEVV------IKLEDRSAIKEMRFVKGIYLVVINAKDTVY-VLSLYSQ 89 (902)
T ss_dssp EEEEEEETTTTEEEEEE--TTSE-EEEECSTTCEEE------EECSSCCCEEEEEEETTTEEEEEETTCEEE-EEETTTC
T ss_pred cEEEEECCCCCEEEEEe--CCCE-EEEEeCCCcEEE------EEcCCCCCEEEEEEcCCCEEEEEECcCeEE-EEECCCC
Confidence 44444112444444422 2554 346777766554 12357778999999876 89999999999 9999998
Q ss_pred CccccccCCcccccceeEEeeccccccc-----cCccccCCc-----------------cCCCceeeeeec---CCCcEE
Q 004404 370 GMKSKKKGSWFKSIRTVASSVTGHKERR-----SSDERDTSS-----------------EKGGRRSSSATD---DSQDVS 424 (755)
Q Consensus 370 ~~~~k~k~~~~~~v~sv~~s~~g~~~~~-----~~~~~~~~~-----------------~~g~~~~vs~~~---ds~~~l 424 (755)
+....+. |...|..+++++++..... ....|+... .+++...+.+.. +....+
T Consensus 90 ~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 90 KVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp SEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred cEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 7766664 4466888888877654222 122233211 122222333333 333568
Q ss_pred EEeCCCcEEEEeeCCCCcccceeeee-------------EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCcee
Q 004404 425 FHGQERVRVRQYGKSCKDLTALYKCQ-------------EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK 491 (755)
Q Consensus 425 ~sg~~dg~Vriwd~~~~~~~~~~~~q-------------~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~ 491 (755)
++|..++.| +||+..++....+... ...+|...|++++|+|+|++||||+.||+|+|||+.+++.+
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 899999999 9999876543222111 11235688999999999999999999999999999887765
Q ss_pred ee--eec--ccc------c---CccccEEEeecC----CCC-ceeccccCCC-----ceeeeccc---------------
Q 004404 492 GE--LLE--KQE------D---GHLNMLLLANGS----PEP-TSLSPKHLDN-----HLEKKRRG--------------- 533 (755)
Q Consensus 492 ~~--l~~--~~~------~---~~~~~v~~v~~s----~dg-~~l~~~s~d~-----~i~~~~~~--------------- 533 (755)
.. +.. ... . .+...+..++|+ |++ .+++++..+. .+..+...
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 42 110 000 0 134467788884 443 4555553331 22222100
Q ss_pred -------c---------cccccccc----------cCc--cc-----ccceeeecC-CCce-------------------
Q 004404 534 -------R---------SINRKSLS----------LDH--MV-----VPETVFALS-DKPI------------------- 560 (755)
Q Consensus 534 -------~---------~~~~~s~s----------~d~--~~-----~~~~v~~~s-~k~i------------------- 560 (755)
. .+....+. .+. .. ....+|++. +.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence 0 00000000 000 00 001233331 1111
Q ss_pred ----------------------EEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEE-----EE-e------e
Q 004404 561 ----------------------CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL-----KI-F------S 605 (755)
Q Consensus 561 ----------------------~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~-----~~-~------~ 605 (755)
..+.+|...+..++|+|+ +.|++|+.|++|++||+.++... .. + .
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 123455555556666787 68999999999999999876421 11 1 5
Q ss_pred cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc--------------------------------------------
Q 004404 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-------------------------------------------- 641 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~-------------------------------------------- 641 (755)
|...|++|+|+| ++++||+|+.||+|+|||+.+++
T Consensus 487 h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 487 KELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 788999999999 99999999999999999997652
Q ss_pred -EE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccccccccccc-CCCCCeEEEEEc-----cCC-
Q 004404 642 -VV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR-SHQRKITGFQFA-----PGS- 712 (755)
Q Consensus 642 -~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~-~h~~~Vtsl~fs-----Pdg- 712 (755)
++ .+..|...|++|+|+||| +||+|+.|++|+|||+++...+....+ ..+. +|...|++|+|+ |||
T Consensus 566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~----~~~~~gh~~~V~sv~Fs~~~~~~Dg~ 640 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENI----REISGAQSACVTCIEFVIMEYGDDGY 640 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEG----GGTCSSCCCCEEEEEEEEEECTTSSS
T ss_pred ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeeh----hHhccccccceEEEEEEEEecCCCCC
Confidence 23 345588899999999999 999999999999999988876543111 2343 899999999999 886
Q ss_pred -CeEEEEEECCCcEEEEE-----CCcceEEeecCC-----ccEEEEE
Q 004404 713 -SSEVLVTSADSRIRVVD-----GIDLVHKFKGEN-----YVQYMVC 748 (755)
Q Consensus 713 -~~~L~sgs~Dg~IrVWD-----~~~ll~~~~GH~-----~~V~sv~ 748 (755)
..+|++++.|++|++|| .++++..|.+|. ..|..++
T Consensus 641 ~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~ 687 (902)
T 2oaj_A 641 SSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKID 687 (902)
T ss_dssp EEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEE
T ss_pred cceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEE
Confidence 24899999999999999 367889999985 4565544
No 36
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-33 Score=302.09 Aligned_cols=347 Identities=18% Similarity=0.200 Sum_probs=244.6
Q ss_pred cCCcHHHHHHHhhcc----cccCCCCCccccccCC----CCCCccccccCCcccccceeEEeeccccccccCccccCCcc
Q 004404 336 VGHSPIVQELMRRQN----VEEGNKDSFDLNNNGS----SGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407 (755)
Q Consensus 336 ~GHs~~V~~l~~~~~----~~sgs~D~tv~~~Wd~----~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~ 407 (755)
..|...|..++|+++ +++|+.|++|+ +|+. .++....+.. ....+...+.++.. ....
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--------~~~~ 107 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVAR-LARIVETDQEGKKYWKLT-----IIAELRHPFALSAS--------SGKT 107 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEE-EEEEEEC------CEEEE-----EEEEEECCCCCC--------------
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEE-EEEEecccCCcccccccc-----cccccccccccccc--------ccCC
Confidence 445577889999887 78999999999 9999 7766211110 00001111111100 0000
Q ss_pred CCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcC
Q 004404 408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE 487 (755)
Q Consensus 408 ~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t 487 (755)
.+....+.... ....++++..++.|++|+.. + .....+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 108 ~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~~-~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 108 TNQVTCLAWSH-DGNSIVTGVENGELRLWNKT-G-----ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp CBCEEEEEECT-TSSEEEEEETTSCEEEEETT-S-----CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred CCceEEEEEcC-CCCEEEEEeCCCeEEEEeCC-C-----CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC
Confidence 01111122222 23467888899999999933 2 23455778999999999999999999999999999999998
Q ss_pred CceeeeeecccccC----------ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-C
Q 004404 488 SERKGELLEKQEDG----------HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S 556 (755)
Q Consensus 488 ~~~~~~l~~~~~~~----------~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s 556 (755)
++....+....... ....+..+.+++++.++ ++..++.+ .+|++ .
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~i-----------------------~~~d~~~ 236 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV-IPGPKGAI-----------------------FVYQITE 236 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEETTEEE-EECGGGCE-----------------------EEEETTC
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEE-EEcCCCeE-----------------------EEEEcCC
Confidence 87766653211110 00114555666665533 33344444 33443 3
Q ss_pred CCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEE
Q 004404 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (755)
Q Consensus 557 ~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrI 634 (755)
.+++..+.+|...|.+++|+|+ .+|++++.|+.|++||+.+++++..+. |...|.+++|+| ++ +|++++.|+.|++
T Consensus 237 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i 314 (425)
T 1r5m_A 237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRL 314 (425)
T ss_dssp SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEE
T ss_pred CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEE
Confidence 4667788899999999999998 689999999999999999998888886 999999999999 77 9999999999999
Q ss_pred EECCCCcEEEe-ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccc-----------ccccccccCCCC-
Q 004404 635 WSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI-----------NLQNKKKRSHQR- 701 (755)
Q Consensus 635 WDl~t~~~v~~-~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i-----------~~~~~~~~~h~~- 701 (755)
||+.+++++.. ..+...|.+++|+|++++|++++.||.|++||+.++........ ......+..|..
T Consensus 315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (425)
T 1r5m_A 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDN 394 (425)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCC
T ss_pred EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccC
Confidence 99999887754 45678999999999999999999999999999987761000000 000122346766
Q ss_pred -CeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 702 -KITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 702 -~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
.|++++|+|++. +|++++.|+.|+|||.
T Consensus 395 ~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 395 DYIFDLSWNCAGN-KISVAYSLQEGSVVAI 423 (425)
T ss_dssp CCEEEEEECTTSS-EEEEEESSSCCEEEEC
T ss_pred CceEEEEccCCCc-eEEEEecCceEEEEee
Confidence 999999999998 8999999999999984
No 37
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-30 Score=278.32 Aligned_cols=276 Identities=17% Similarity=0.236 Sum_probs=234.6
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..++++..++.|++|+..+++. ...+.+|.+.|++++|+|++++|++++.||.|++||+.+++....+.
T Consensus 45 ~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------ 113 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWYSLNGER-----LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK------ 113 (369)
T ss_dssp CEEEEEESSSCEEEEETTTCCE-----EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE------
T ss_pred CEEEEEeCCCEEEEEeCCCchh-----hhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee------
Confidence 4577888999999999876543 45677999999999999999999999999999999999888776652
Q ss_pred ccccEEEeecCCCCceeccccCC-----CceeeecccccccccccccCcccccceeeecCCCceEEeccCCC--CEEEEE
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLD-----NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD--DVLDLS 574 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d-----~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~--~V~~L~ 574 (755)
+...+..+.+++++..++++..+ +.+..+........ ..+......++..+..|.. .|.+++
T Consensus 114 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 114 SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT-----------HELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT-----------CCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc-----------eeecccccceeeeccCCcCccceeEEE
Confidence 45678899999999999988776 66654443321110 0122234456667778887 999999
Q ss_pred ecCC-cEEEEEeCCCcEEEEECCC-CcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCC
Q 004404 575 WSKS-QHLLSSSMDKTVRLWHLSS-KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM 651 (755)
Q Consensus 575 ~spd-~~LaSgs~DgtVrLWDl~t-~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~ 651 (755)
|+|+ .+|++++.|+.|++||+.+ .+.+..+. |...|.+++|+| ++++|++++.|+.|++||+.+++.+....+...
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 261 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCP 261 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeecCCCC
Confidence 9998 6899999999999999998 77787776 999999999999 999999999999999999999999888888899
Q ss_pred EEEEEEccCCCEEEEEECCC--------------cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEE
Q 004404 652 VTAACYTPDGQGALVGSYKG--------------SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (755)
Q Consensus 652 VtsvafSPdG~~LasGs~DG--------------~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~ 717 (755)
+..++|+|+++++++++.++ .+++||+.+++....+ .+|...|++++|+|+++ +|+
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---------~~~~~~v~~~~~s~~~~-~l~ 331 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV---------QGHFGPLNTVAISPQGT-SYA 331 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE---------ECCSSCEEEEEECTTSS-EEE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe---------ecccCcEEEEEECCCCC-EEE
Confidence 99999999999999999988 8999999998877653 38999999999999998 899
Q ss_pred EEECCCcEEEEEC
Q 004404 718 VTSADSRIRVVDG 730 (755)
Q Consensus 718 sgs~Dg~IrVWD~ 730 (755)
+++.|+.|+||+.
T Consensus 332 s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 332 SGGEDGFIRLHHF 344 (369)
T ss_dssp EEETTSEEEEEEE
T ss_pred EEcCCCeEEEEEC
Confidence 9999999999993
No 38
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.7e-31 Score=288.78 Aligned_cols=267 Identities=21% Similarity=0.304 Sum_probs=214.4
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeE-------------eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQE-------------IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~-------------l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~ 489 (755)
.+++|. ++.+++|+...++......... ...+...|.+++|+|+|++||+|+.|++|+|||+.+++
T Consensus 78 ~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~ 156 (393)
T 1erj_A 78 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 156 (393)
T ss_dssp EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 345554 5789999987765432221100 01233359999999999999999999999999999887
Q ss_pred eeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC-CceEEeccCCC
Q 004404 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLD 568 (755)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~-k~i~~l~gH~~ 568 (755)
....+ .+|...+..+.++|++..++++..++.+. +|++.. +....+ .|..
T Consensus 157 ~~~~~-----~~h~~~v~~~~~~p~~~~l~s~s~d~~v~-----------------------iwd~~~~~~~~~~-~~~~ 207 (393)
T 1erj_A 157 IVMIL-----QGHEQDIYSLDYFPSGDKLVSGSGDRTVR-----------------------IWDLRTGQCSLTL-SIED 207 (393)
T ss_dssp EEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSEEE-----------------------EEETTTTEEEEEE-ECSS
T ss_pred EEEEE-----ccCCCCEEEEEEcCCCCEEEEecCCCcEE-----------------------EEECCCCeeEEEE-EcCC
Confidence 66654 57888999999999999999998888874 444433 333334 3567
Q ss_pred CEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcEEEEe--------ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECC
Q 004404 569 DVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKIF--------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (755)
Q Consensus 569 ~V~~L~~sp-d-~~LaSgs~DgtVrLWDl~t~~~~~~~--------~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~ 638 (755)
.|.+++|+| + .+|++++.|++|++||+.++.++..+ .|...|++++|+| ++++|++|+.|++|++||++
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECC
Confidence 799999999 5 68999999999999999999888776 3889999999999 99999999999999999997
Q ss_pred CCc------------E-EEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEE
Q 004404 639 ERQ------------V-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (755)
Q Consensus 639 t~~------------~-v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (755)
+.. + ..+..|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+ .+|...|.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l---------~~h~~~v~~ 357 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML---------QGHRNSVIS 357 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE---------ECCSSCEEE
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE---------CCCCCCEEE
Confidence 632 2 245677889999999999999999999999999999998876543 489999999
Q ss_pred EEEcc------CCCeEEEEEECCCcEEEEEC
Q 004404 706 FQFAP------GSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 706 l~fsP------dg~~~L~sgs~Dg~IrVWD~ 730 (755)
++|++ ++. +|++|+.|++|+||+.
T Consensus 358 v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 358 VAVANGSSLGPEYN-VFATGSGDCKARIWKY 387 (393)
T ss_dssp EEECSSCTTCTTCE-EEEEEETTSEEEEEEE
T ss_pred EEecCCcCcCCCCC-EEEEECCCCcEEECcc
Confidence 99987 454 8999999999999994
No 39
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-31 Score=282.75 Aligned_cols=281 Identities=18% Similarity=0.256 Sum_probs=212.9
Q ss_pred eeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCce--eeeeecccccCccccEEEeecCCCCceeccccCC
Q 004404 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER--KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (755)
Q Consensus 447 ~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~--~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d 524 (755)
...+.|.+|.++|++++|+|+ +||||+.|++|+||++..+.. ...+ ...+|...+..+.|+|++.+++++..+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~---~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVL---DETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEE---CTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEE---ecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 345678899999999999988 999999999999999976532 2222 122378899999999999999999999
Q ss_pred CceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCC----Cc
Q 004404 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS----KT 599 (755)
Q Consensus 525 ~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t----~~ 599 (755)
+.+.++....... .....+++..+.+|...|++++|+|+ .+|++++.|++|++||+.. .+
T Consensus 80 ~~v~iw~~~~~~~---------------~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 80 STVSIWAKEESAD---------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE 144 (330)
T ss_dssp SCEEEEEC----------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCE
T ss_pred CcEEEEEcccCcC---------------ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeE
Confidence 8886554321100 00123456778999999999999998 7899999999999999943 25
Q ss_pred EEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC--cEE-EeccCCCCEEEEEEccC--CCEEEEEECCCcE
Q 004404 600 CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVV-DWNDLHEMVTAACYTPD--GQGALVGSYKGSC 673 (755)
Q Consensus 600 ~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~--~~v-~~~~~~~~VtsvafSPd--G~~LasGs~DG~I 673 (755)
++..+. |...|++++|+| ++.+|++|+.|++|+|||+.++ +++ .+..|...|.+++|+|+ +.+|++|+.|+.|
T Consensus 145 ~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp EEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred EEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 666665 999999999999 9999999999999999998776 344 45567889999999998 7799999999999
Q ss_pred EEEECCCCeeeecccccccccccc-CCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--C--cceE-EeecCCc-cEEE
Q 004404 674 HLYNTSENKLQQKSPINLQNKKKR-SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--I--DLVH-KFKGENY-VQYM 746 (755)
Q Consensus 674 ~lwDl~~~~~~~~~~i~~~~~~~~-~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~--~ll~-~~~GH~~-~V~s 746 (755)
++||+..+......... ....+. .|...|++++|++++ +|++++.|++|+|||. + +++. .+.+|.. .|..
T Consensus 224 ~iw~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~ 300 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWV-CEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINV 300 (330)
T ss_dssp EEEEEEEECTTSCEEEE-EEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEE
T ss_pred EEEEecCCCccccceeE-EeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEE
Confidence 99998754211000000 001122 488999999999765 6999999999999993 3 2333 3468887 8999
Q ss_pred EEEEE
Q 004404 747 VCIVL 751 (755)
Q Consensus 747 v~fs~ 751 (755)
++|.|
T Consensus 301 v~~~~ 305 (330)
T 2hes_X 301 VKWLE 305 (330)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 99877
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-30 Score=280.15 Aligned_cols=270 Identities=21% Similarity=0.346 Sum_probs=218.7
Q ss_pred eeeeeEeecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCC
Q 004404 446 LYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (755)
Q Consensus 446 ~~~~q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d 524 (755)
+....+|.+|.+.|++|+|+|++ ++|+||+.|++|++|++...............+|...+..+.+++++.++++++.+
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 33456789999999999999965 89999999999999998654332222222236788999999999999999999998
Q ss_pred CceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEE
Q 004404 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (755)
Q Consensus 525 ~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~ 602 (755)
+.+ .+|++ +++.+..+.+|...|.+++|+|+ .+|++++.|++|++||++.. ++.
T Consensus 87 ~~v-----------------------~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~ 142 (319)
T 3frx_A 87 KTL-----------------------RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLA 142 (319)
T ss_dssp SEE-----------------------EEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEE
T ss_pred CEE-----------------------EEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEE
Confidence 888 45554 45677889999999999999998 78999999999999999754 444
Q ss_pred Ee-ecCCceEEEEEeeC-----CCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 004404 603 IF-SHSDYVTCIQFNPV-----DDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (755)
Q Consensus 603 ~~-~h~~~VtsVafsP~-----dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~l 675 (755)
.+ .|...|.++.|+|. ++.+|++++.|++|++||+++.++. .+..|...|.+++|+|+|++|++|+.||.|++
T Consensus 143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~i 222 (319)
T 3frx_A 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222 (319)
T ss_dssp EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 54 59999999999982 2348999999999999999998776 45678889999999999999999999999999
Q ss_pred EECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEee--------cCCccEE
Q 004404 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFK--------GENYVQY 745 (755)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~--------GH~~~V~ 745 (755)
||+.+++.+..+ .+...|.+++|+|++. +|++++. ..|++|+ ...++..+. .|...+.
T Consensus 223 wd~~~~~~~~~~----------~~~~~v~~~~~sp~~~-~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 290 (319)
T 3frx_A 223 WNLAAKKAMYTL----------SAQDEVFSLAFSPNRY-WLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV 290 (319)
T ss_dssp EETTTTEEEEEE----------ECCSCEEEEEECSSSS-EEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEE
T ss_pred EECCCCcEEEEe----------cCCCcEEEEEEcCCCC-EEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCccee
Confidence 999998877653 2346899999999997 6666654 5699999 344555554 3455688
Q ss_pred EEEEEE
Q 004404 746 MVCIVL 751 (755)
Q Consensus 746 sv~fs~ 751 (755)
+++|+|
T Consensus 291 ~~~~sp 296 (319)
T 3frx_A 291 SLAWSA 296 (319)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 888764
No 41
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.2e-30 Score=288.09 Aligned_cols=282 Identities=18% Similarity=0.340 Sum_probs=223.9
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
++++.|. |+.|++||..+++...++ .+.+|...|++|+|+|+|++||+|+.||+|+|||+.+++.+..+ .+
T Consensus 117 n~lAvgl-d~tV~lWd~~tg~~~~~~---~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-----~~ 187 (420)
T 4gga_A 117 NVLAVAL-DNSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-----TS 187 (420)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-----CC
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEE---EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE-----eC
Confidence 4666665 899999999988755433 35689999999999999999999999999999999998877765 56
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cE
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~ 580 (755)
|...+.++.+ ++.+++++..++.+..+... .....+..+.+|...+..+.|+|+ .+
T Consensus 188 h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~---------------------~~~~~~~~~~~h~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 188 HSARVGSLSW--NSYILSSGSRSGHIHHHDVR---------------------VAEHHVATLSGHSQEVCGLRWAPDGRH 244 (420)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETT---------------------SSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCCceEEEee--CCCEEEEEeCCCceeEeeec---------------------ccceeeEEecccccceeeeeecCCCCe
Confidence 6667766665 45678887777766332211 123456778999999999999998 78
Q ss_pred EEEEeCCCcEEEEECCCCcE----EEEe-ecCCceEEEEEeeCCCcEEEEE--ECCCcEEEEECCCCcEEEeccCCCCEE
Q 004404 581 LLSSSMDKTVRLWHLSSKTC----LKIF-SHSDYVTCIQFNPVDDRYFISG--SLDAKVRIWSIPERQVVDWNDLHEMVT 653 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~----~~~~-~h~~~VtsVafsP~dg~~LaSg--S~DgtVrIWDl~t~~~v~~~~~~~~Vt 653 (755)
+++++.|+.|++|++..++. +..+ .|...|.+++|+|.+..+++++ +.|++|++||+.++++......+..+.
T Consensus 245 l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~ 324 (420)
T 4gga_A 245 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC 324 (420)
T ss_dssp EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEE
T ss_pred eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccccee
Confidence 99999999999999987642 3333 4999999999999666777664 579999999999999998888889999
Q ss_pred EEEEccCCCEEEEEE--CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC-
Q 004404 654 AACYTPDGQGALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG- 730 (755)
Q Consensus 654 svafSPdG~~LasGs--~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~- 730 (755)
++.|+|+++.|++++ .|+.|+|||+.+++++..+ .+|...|++++|+|+|. +|++|+.|++|+|||.
T Consensus 325 ~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l---------~gH~~~V~~l~~spdg~-~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 325 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL---------KGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCF 394 (420)
T ss_dssp EEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE---------CCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCS
T ss_pred eeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE---------cCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECC
Confidence 999999999998866 6899999999999887653 48999999999999998 8999999999999994
Q ss_pred -CcceEEeecCCccEE
Q 004404 731 -IDLVHKFKGENYVQY 745 (755)
Q Consensus 731 -~~ll~~~~GH~~~V~ 745 (755)
.+...+...+...+.
T Consensus 395 ~~~~~~~~~~~~~~~~ 410 (420)
T 4gga_A 395 ELDPARRREREKASAA 410 (420)
T ss_dssp CSSCC-----------
T ss_pred CCCccchhhhccCCcc
Confidence 345555555555443
No 42
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=302.67 Aligned_cols=333 Identities=11% Similarity=0.162 Sum_probs=253.7
Q ss_pred HHHHHHhhcc----cccC----------CCCCccccccCCCCCCccccc-cCCcccccceeEEeeccccccccCccccCC
Q 004404 341 IVQELMRRQN----VEEG----------NKDSFDLNNNGSSGGGMKSKK-KGSWFKSIRTVASSVTGHKERRSSDERDTS 405 (755)
Q Consensus 341 ~V~~l~~~~~----~~sg----------s~D~tv~~~Wd~~~g~~~~k~-k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~ 405 (755)
.|..++|+|+ +++| +.|++|+ +|+..++.....+ .-.|...|..+++++++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~-iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------- 79 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLE-LWSLLAADSEKPIASLQVDSKFNDLDWSHNN------------- 79 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCE-EEESSSGGGCSCSCCCCCSSCEEEEEECSSS-------------
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEE-EEEccCCCCCcEEEEEecCCceEEEEECCCC-------------
Confidence 3556777776 6677 8999999 9999877532211 12344455555554432
Q ss_pred ccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC-CCEEEEEECCCcEEEEe
Q 004404 406 SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQ 484 (755)
Q Consensus 406 ~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd-g~~LaTgs~DGtVrVWd 484 (755)
..++++..++.|++|+...... .......+.+|.+.|++++|+|+ +++|++++.|+.|++||
T Consensus 80 ----------------~~l~~~~~dg~v~vw~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 80 ----------------KIIAGALDNGSLELYSTNEANN-AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp ----------------SCEEEEESSSCEEEECCSSTTS-CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred ----------------CeEEEEccCCeEEEeecccccc-cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 3467788899999999975221 11244667899999999999998 89999999999999999
Q ss_pred CcCCc------eeeeeecccccCccccEEEeecCCC-CceeccccCCCceeeecccccccccccccCcccccceeeec-C
Q 004404 485 VVESE------RKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S 556 (755)
Q Consensus 485 l~t~~------~~~~l~~~~~~~~~~~v~~v~~s~d-g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s 556 (755)
+.+.+ ....+ .....+...+..+.++++ +.+++++..++.+. +|++ .
T Consensus 143 ~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~-----------------------iwd~~~ 197 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTP--GQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS-----------------------IWDLKA 197 (416)
T ss_dssp TTTTSSCTTTCCCBCC--CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEE-----------------------EEETTT
T ss_pred CCCCcccccccccccc--ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEE-----------------------EEECCC
Confidence 98876 22221 123467778899999999 78888888888774 3333 2
Q ss_pred CCceEEeccC------CCCEEEEEecCC--cEEEEEeCCC---cEEEEECCCC-cEEEEee--cCCceEEEEEeeCCCcE
Q 004404 557 DKPICSFQGH------LDDVLDLSWSKS--QHLLSSSMDK---TVRLWHLSSK-TCLKIFS--HSDYVTCIQFNPVDDRY 622 (755)
Q Consensus 557 ~k~i~~l~gH------~~~V~~L~~spd--~~LaSgs~Dg---tVrLWDl~t~-~~~~~~~--h~~~VtsVafsP~dg~~ 622 (755)
.+.+..+..| ...|.+++|+|+ .+|++++.|+ .|++||++++ .++..+. |...|++++|+|.++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 277 (416)
T 2pm9_A 198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL 277 (416)
T ss_dssp TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe
Confidence 3445555555 789999999998 4899999999 9999999986 5666664 89999999999867899
Q ss_pred EEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeeeecccc-----------
Q 004404 623 FISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPI----------- 689 (755)
Q Consensus 623 LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG-~~LasGs~DG~I~lwDl~~~~~~~~~~i----------- 689 (755)
|++++.|++|++||+.+++++. +..|...|++++|+|++ .+|++++.||.|++|++...........
T Consensus 278 l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T 2pm9_A 278 LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD 357 (416)
T ss_dssp EEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred EEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence 9999999999999999988774 45677899999999999 8999999999999999988764432110
Q ss_pred --cc-------------ccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 690 --NL-------------QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 690 --~~-------------~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
.. .......|...|++++|+|+|+ +|++++.|++|+||+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-LVQITPDGKGVSITNP 412 (416)
T ss_dssp ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-EECBCTTSSCBCCBCC
T ss_pred ccccccccccccccccccccCCccccCCccceEEeeCCe-EEEEeCCCCeEEEEEe
Confidence 00 0011122677888999999997 8999999999999994
No 43
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-31 Score=286.96 Aligned_cols=292 Identities=14% Similarity=0.190 Sum_probs=235.9
Q ss_pred CCcEEEEeCCCcEEEEeeC----CCCcc-----cceeeeeEee------cccCCEEEEEEcCCCCEEEEEECCCcEEEEe
Q 004404 420 SQDVSFHGQERVRVRQYGK----SCKDL-----TALYKCQEIQ------AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (755)
Q Consensus 420 s~~~l~sg~~dg~Vriwd~----~~~~~-----~~~~~~q~l~------gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWd 484 (755)
+..+++++..++.|++|++ ..++. ........+. +|.+.|++++|+|++++|++++.||.|+||+
T Consensus 57 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~ 136 (425)
T 1r5m_A 57 DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN 136 (425)
T ss_dssp CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 3336788899999999999 66552 1111111122 2788999999999999999999999999999
Q ss_pred CcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEec
Q 004404 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564 (755)
Q Consensus 485 l~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~ 564 (755)
.+++....+ ..|...+..+.++|++..++++..++.+..+... .++.+..+.
T Consensus 137 -~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----------------------~~~~~~~~~ 188 (425)
T 1r5m_A 137 -KTGALLNVL-----NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI----------------------SGTVMQHFE 188 (425)
T ss_dssp -TTSCEEEEE-----CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT----------------------TTEEEEEEC
T ss_pred -CCCCeeeec-----cCCCccEEEEEECCCCCEEEEEecCCeEEEEECC----------------------CCcEEEEee
Confidence 455555544 5677889999999999999998888777433322 334455555
Q ss_pred cCCCC---------------EEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEEC
Q 004404 565 GHLDD---------------VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL 628 (755)
Q Consensus 565 gH~~~---------------V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~ 628 (755)
.|... |.+++|+|++.+++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 267 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASD 267 (425)
T ss_dssp CC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEET
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcC
Confidence 55555 999999999999999999999999999998888875 999999999999 9999999999
Q ss_pred CCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEE
Q 004404 629 DAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (755)
Q Consensus 629 DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (755)
|+.|++||+.+++.+. +..+...|.+++|+|++ +|++++.||.|++||+.+++.+..+ ..|...|++++
T Consensus 268 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~i~~~~ 337 (425)
T 1r5m_A 268 DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS---------IVDGVPIFAGR 337 (425)
T ss_dssp TSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE---------ECTTCCEEEEE
T ss_pred CCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec---------ccCCccEEEEE
Confidence 9999999999877654 44577899999999999 9999999999999999998877653 37889999999
Q ss_pred EccCCCeEEEEEECCCcEEEEEC--Cc--------------------ceEEeecCCc--cEEEEEEEE
Q 004404 708 FAPGSSSEVLVTSADSRIRVVDG--ID--------------------LVHKFKGENY--VQYMVCIVL 751 (755)
Q Consensus 708 fsPdg~~~L~sgs~Dg~IrVWD~--~~--------------------ll~~~~GH~~--~V~sv~fs~ 751 (755)
|+|++. +|++++.|+.|+|||. .+ ++..+.+|.. .|..++|.+
T Consensus 338 ~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 338 ISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC 404 (425)
T ss_dssp ECTTSS-EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred EcCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC
Confidence 999998 8999999999999993 45 7899999977 899999864
No 44
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-30 Score=281.21 Aligned_cols=270 Identities=19% Similarity=0.328 Sum_probs=214.0
Q ss_pred eeeeEeecccCCEEEEEE-----cC-CCCEEEEEECCCcEEEEeCcCCceeee--eecccccCccccEEEeecCCCCcee
Q 004404 447 YKCQEIQAHNGSIWSIKF-----SL-DGRYLASAGEDCVIHVWQVVESERKGE--LLEKQEDGHLNMLLLANGSPEPTSL 518 (755)
Q Consensus 447 ~~~q~l~gH~~~I~sI~f-----Sp-dg~~LaTgs~DGtVrVWdl~t~~~~~~--l~~~~~~~~~~~v~~v~~s~dg~~l 518 (755)
...+.|.+|.+.|++|+| ++ ++++||||+.|++|+|||+.+.+.... .......+|...+..+.++|++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 345678999999999999 77 999999999999999999976542211 1112236788899999999999999
Q ss_pred ccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECC
Q 004404 519 SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS 596 (755)
Q Consensus 519 ~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~ 596 (755)
++++.++.+ .+|++ +++.+..+.+|...|++++|+|+ .+|++++.|++|++||+.
T Consensus 92 ~s~s~D~~v-----------------------~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 92 ISSSWDKTL-----------------------RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEETTSEE-----------------------EEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred EEEcCCCcE-----------------------EEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence 999888887 45554 45677889999999999999998 789999999999999998
Q ss_pred CCcEEEEe---ecCCceEEEEEeeCCC----------cEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCE
Q 004404 597 SKTCLKIF---SHSDYVTCIQFNPVDD----------RYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQG 663 (755)
Q Consensus 597 t~~~~~~~---~h~~~VtsVafsP~dg----------~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~ 663 (755)
........ .|...|.+++|+| ++ .+|++++.|++|++||........+..|...|++++|+|+|++
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCE
Confidence 44333333 3888999999999 65 7999999999999999654444466678889999999999999
Q ss_pred EEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--Ccce--EEee-
Q 004404 664 ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLV--HKFK- 738 (755)
Q Consensus 664 LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll--~~~~- 738 (755)
|++|+.||.|++||+........ ...+...|++++|+|++. +++++.|+.|+|||. ++.+ ..+.
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~~~---------~~~~~~~v~~v~~sp~~~--~la~~~d~~v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYPQR---------EFDAGSTINQIAFNPKLQ--WVAVGTDQGVKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSCSE---------EEECSSCEEEEEECSSSC--EEEEEESSCEEEEESSSCCSCSEEECCC
T ss_pred EEEEcCCCeEEEEECCCCcccce---------eecCCCcEEEEEECCCCC--EEEEECCCCEEEEEeCCCCCCceEEeec
Confidence 99999999999999954332211 012455799999999986 445667889999993 3332 2444
Q ss_pred ----------cCCccEEEEEEEE
Q 004404 739 ----------GENYVQYMVCIVL 751 (755)
Q Consensus 739 ----------GH~~~V~sv~fs~ 751 (755)
+|...|++++|.|
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNA 319 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECS
T ss_pred CcchhhhhhcCCCCceEEEEECC
Confidence 7888899999864
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.6e-30 Score=272.18 Aligned_cols=262 Identities=18% Similarity=0.260 Sum_probs=225.8
Q ss_pred eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeec
Q 004404 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (755)
Q Consensus 452 l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~ 531 (755)
..+|.+.|++++|+|++++|++++ ||.|++|++.+++....+.......+...+..+.++|++..++++..++.+.
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~--- 122 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS--- 122 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE---
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE---
Confidence 347999999999999999999999 9999999998876554443333346778899999999999999988877774
Q ss_pred ccccccccccccCcccccceeeecCC---CceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-c
Q 004404 532 RGRSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (755)
Q Consensus 532 ~~~~~~~~s~s~d~~~~~~~v~~~s~---k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h 606 (755)
+|++.. .....+.+|...|.+++|+|+ .+|++++.|+.|++||+.+++.+..+. |
T Consensus 123 --------------------~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 182 (337)
T 1gxr_A 123 --------------------IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp --------------------EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred --------------------EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc
Confidence 333322 245678889999999999998 789999999999999999999998886 9
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
...|.+++|+| ++++|++++.|+.|++||+++++.+....+...+.+++|+|++++|++++.++.|++||+.+++...
T Consensus 183 ~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~- 260 (337)
T 1gxr_A 183 TDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ- 260 (337)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-
T ss_pred cCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-
Confidence 99999999999 9999999999999999999999988888888999999999999999999999999999999876543
Q ss_pred cccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEeecCCccEEEEEEE
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~~GH~~~V~sv~fs 750 (755)
...|...|++++|+|+++ +|++++.|+.|++||. ++.+ ....|...+.+++|.
T Consensus 261 ---------~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s 315 (337)
T 1gxr_A 261 ---------LHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDIS 315 (337)
T ss_dssp ---------ECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEE-EEEECSSCEEEEEEC
T ss_pred ---------EcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCCeEE-EEecCCCcEEEEEEC
Confidence 247899999999999998 8999999999999993 4444 345688889998885
No 46
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.9e-30 Score=283.23 Aligned_cols=299 Identities=8% Similarity=0.066 Sum_probs=230.2
Q ss_pred eeeecCCCcEEEEeCCCcEEEEeeCCCCccc-ceeeeeEeecccCCEEEEEEcCC----C---CEEEEEECCCcEEEEeC
Q 004404 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLT-ALYKCQEIQAHNGSIWSIKFSLD----G---RYLASAGEDCVIHVWQV 485 (755)
Q Consensus 414 vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~-~~~~~q~l~gH~~~I~sI~fSpd----g---~~LaTgs~DGtVrVWdl 485 (755)
+.+....+..+++++.|+.|++|+....+.. .......+.+|..+|++++|+|+ + ++|++++.||.|++|++
T Consensus 19 i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~ 98 (397)
T 1sq9_A 19 IFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRI 98 (397)
T ss_dssp EEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEE
T ss_pred eEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEc
Confidence 3444444477899999999999999876621 12234567799999999999999 9 99999999999999999
Q ss_pred cCCce-----eeeeecccccCc-----cccEEEeecC----CCCce-eccccCCCceeeecccccccccccccCcccccc
Q 004404 486 VESER-----KGELLEKQEDGH-----LNMLLLANGS----PEPTS-LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (755)
Q Consensus 486 ~t~~~-----~~~l~~~~~~~~-----~~~v~~v~~s----~dg~~-l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~ 550 (755)
.+++. ...+ ..+ ...+..+.++ +++.. ++++..++.+.++.......... ....
T Consensus 99 ~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~--- 167 (397)
T 1sq9_A 99 TREDETKKVIFEKL-----DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN---SLTL--- 167 (397)
T ss_dssp EECTTTCCEEEEEE-----CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH---HTTT---
T ss_pred cCCcccccccceee-----cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc---ccee---
Confidence 88775 3333 344 5789999999 99998 99888888776554332000000 0000
Q ss_pred eeeecCCCceEEe-------ccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee----c---CCceEEEEEe
Q 004404 551 TVFALSDKPICSF-------QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----H---SDYVTCIQFN 616 (755)
Q Consensus 551 ~v~~~s~k~i~~l-------~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~----h---~~~VtsVafs 616 (755)
...+...+ ..|...|.+++|+|++.|++++.|+.|++||+.+++++..+. | ...|.+++|+
T Consensus 168 -----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 168 -----NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp -----CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred -----eccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 00111144 458899999999998888899999999999999999988886 5 8999999999
Q ss_pred eCCCcEEEEEECC---CcEEEEECCCCcEEEec-c-------------CCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 617 PVDDRYFISGSLD---AKVRIWSIPERQVVDWN-D-------------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 617 P~dg~~LaSgS~D---gtVrIWDl~t~~~v~~~-~-------------~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
| ++.+|++++.| +.|++||+.+++.+..+ . +...|.+++|+|++++|++++.||.|++||+.
T Consensus 243 ~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 243 P-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp S-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred C-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 9 99999999999 99999999998877544 3 67899999999999999999999999999999
Q ss_pred CCeeeecccccccc------------ccccCCCCCeEEEEEccCCC---------eEEEEEECCCcEEEEE
Q 004404 680 ENKLQQKSPINLQN------------KKKRSHQRKITGFQFAPGSS---------SEVLVTSADSRIRVVD 729 (755)
Q Consensus 680 ~~~~~~~~~i~~~~------------~~~~~h~~~Vtsl~fsPdg~---------~~L~sgs~Dg~IrVWD 729 (755)
+++.+..+...... .....|...|++++|+|++. .+|++++.|+.|+|||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 322 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 99887765411000 00112389999999999982 3899999999999999
No 47
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.98 E-value=2.4e-30 Score=298.36 Aligned_cols=378 Identities=16% Similarity=0.198 Sum_probs=267.0
Q ss_pred eeeeccCCCceeEEeccccCCccceeeeecCCceecHHHHHHhcCCcHHHHHHHhhcc----cccCCCCCccccccCCCC
Q 004404 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN----VEEGNKDSFDLNNNGSSG 368 (755)
Q Consensus 293 ~~i~~ld~g~~~~~~e~~~dG~~~~l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~----~~sgs~D~tv~~~Wd~~~ 368 (755)
.++.=-.+|+.+++.....+ ....++-..+++.+ ..+.+|...|..++|.++ +++++.|++++ +|+..+
T Consensus 120 ~~~~~s~~~~~l~~~~~~~~-~~~~v~~~d~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~-vwd~~~ 192 (615)
T 1pgu_A 120 SDISWDFEGRRLCVVGEGRD-NFGVFISWDSGNSL-----GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV-FYQGPP 192 (615)
T ss_dssp EEEEECTTSSEEEEEECCSS-CSEEEEETTTCCEE-----EECCSCSSCEEEEEECSSSSCEEEEEETTTEEE-EEETTT
T ss_pred EEEEEeCCCCEEEEeccCCC-CccEEEEEECCCcc-----eeeecCCccEEEEEECCCCCcEEEEEeCCCcEE-EEeCCC
Confidence 33332345665555432111 12334555577766 677899999999999987 88999999999 999887
Q ss_pred CCccccccCCccc---ccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccc
Q 004404 369 GGMKSKKKGSWFK---SIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTA 445 (755)
Q Consensus 369 g~~~~k~k~~~~~---~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~ 445 (755)
++....++ +|.. .+..+++++ +....++++..++.|++|+..+++.
T Consensus 193 ~~~~~~~~-~~~~~~~~v~~~~~~~----------------------------~~~~~l~~~~~dg~i~vwd~~~~~~-- 241 (615)
T 1pgu_A 193 FKFSASDR-THHKQGSFVRDVEFSP----------------------------DSGEFVITVGSDRKISCFDGKSGEF-- 241 (615)
T ss_dssp BEEEEEEC-SSSCTTCCEEEEEECS----------------------------TTCCEEEEEETTCCEEEEETTTCCE--
T ss_pred cceeeeec-ccCCCCceEEEEEECC----------------------------CCCCEEEEEeCCCeEEEEECCCCCE--
Confidence 76555554 3444 444444433 2134678888999999999876553
Q ss_pred eeeeeEe-e---cccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccc-----------------------
Q 004404 446 LYKCQEI-Q---AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ----------------------- 498 (755)
Q Consensus 446 ~~~~q~l-~---gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~----------------------- 498 (755)
...+ . +|...|.+++|+ ++++|++++.|+.|++||+.+++....+....
T Consensus 242 ---~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 317 (615)
T 1pgu_A 242 ---LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 317 (615)
T ss_dssp ---EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET
T ss_pred ---eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEEC
Confidence 3345 4 899999999999 99999999999999999999887665543210
Q ss_pred -----------------ccCccccEEEeecCCCCceeccccCCCceeeeccc-------ccccccccc---------cCc
Q 004404 499 -----------------EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG-------RSINRKSLS---------LDH 545 (755)
Q Consensus 499 -----------------~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~-------~~~~~~s~s---------~d~ 545 (755)
..+|...+..+.+ |+ ++++..++.+..+... ..+....+. .+.
T Consensus 318 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~ 393 (615)
T 1pgu_A 318 DGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDD 393 (615)
T ss_dssp TSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTT
T ss_pred CCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCC
Confidence 0122233333333 33 2333333333222211 000000000 000
Q ss_pred cccc-------------------------------ceeeec-CCCceEEeccCCCCEEEEEecCCcEEEEEeC-CCcEEE
Q 004404 546 MVVP-------------------------------ETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSM-DKTVRL 592 (755)
Q Consensus 546 ~~~~-------------------------------~~v~~~-s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~-DgtVrL 592 (755)
.+.. ..+|.. .++.+..+. |...+.+++|+ ..+|++++. |+.|++
T Consensus 394 ~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~~d~~i~~ 471 (615)
T 1pgu_A 394 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS-QNYVAVGLEEGNTIQV 471 (615)
T ss_dssp EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC-SSEEEEEETTTSCEEE
T ss_pred CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc-CCEEEEeecCCCeEEE
Confidence 0000 011222 344444444 78899999999 889999999 999999
Q ss_pred EECCCCcEE-EEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc--CCCCEEEEEEcc---------
Q 004404 593 WHLSSKTCL-KIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND--LHEMVTAACYTP--------- 659 (755)
Q Consensus 593 WDl~t~~~~-~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~--~~~~VtsvafSP--------- 659 (755)
||+..++.. ..+. |...|++++|+| ++++|++++.|+.|++||+.+++++.... |...|++++|+|
T Consensus 472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~ 550 (615)
T 1pgu_A 472 FKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 550 (615)
T ss_dssp EETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred EECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccc
Confidence 999987765 3333 899999999999 99999999999999999999998886554 778999999999
Q ss_pred -CCCEEEEEECCCcEEEEECCCC-eeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 660 -DGQGALVGSYKGSCHLYNTSEN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 660 -dG~~LasGs~DG~I~lwDl~~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
++++|++|+.||.|++||+.++ +.... +.+|...|++++|+|++. |++++.|++|++||.
T Consensus 551 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------~~~h~~~v~~l~~s~~~~--l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 551 IEEDLVATGSLDTNIFIYSVKRPMKIIKA---------LNAHKDGVNNLLWETPST--LVSSGADACIKRWNV 612 (615)
T ss_dssp CSCCEEEEEETTSCEEEEESSCTTCCEEE---------TTSSTTCEEEEEEEETTE--EEEEETTSCEEEEEE
T ss_pred cCCCEEEEEcCCCcEEEEECCCCceechh---------hhcCccceEEEEEcCCCC--eEEecCCceEEEEee
Confidence 9999999999999999999987 44433 348999999999999985 999999999999983
No 48
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.8e-31 Score=322.37 Aligned_cols=406 Identities=12% Similarity=0.052 Sum_probs=279.0
Q ss_pred cCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccc-----cccCccccCCcc
Q 004404 336 VGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE-----RRSSDERDTSSE 407 (755)
Q Consensus 336 ~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~-----~~~~~~~~~~~~ 407 (755)
.||...|..++|+++ +++|+.|++|+ +|+..++...... .|...|..+++++ +... ......|+....
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~-lw~~~~~~~~~~~--~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVH-IYGQQQVEVVIKL--EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEE-EECSTTCEEEEEC--SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEE-EEeCCCcEEEEEc--CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 588888999999998 89999999999 9998776544433 3566789999887 5432 222334543221
Q ss_pred CC-----Cceeeeeec--CCCcEEEEeCCCcEEEEeeCCCCcccceeee-------eEeecccCCEEEEEEcCC-CCEEE
Q 004404 408 KG-----GRRSSSATD--DSQDVSFHGQERVRVRQYGKSCKDLTALYKC-------QEIQAHNGSIWSIKFSLD-GRYLA 472 (755)
Q Consensus 408 ~g-----~~~~vs~~~--ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~-------q~l~gH~~~I~sI~fSpd-g~~La 472 (755)
+. +...+++.. .....+++|..++.|++||+..+++. .+.. ..+.+|.++|++|+|+|+ +.+|+
T Consensus 90 ~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 10 111222322 23456899999999999999877653 1211 345789999999999996 57899
Q ss_pred EEECCCcEEEEeCcCCceeeeeecc-------------cccCccccEEEeecCCCCceeccccCCCceeeeccccccccc
Q 004404 473 SAGEDCVIHVWQVVESERKGELLEK-------------QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK 539 (755)
Q Consensus 473 Tgs~DGtVrVWdl~t~~~~~~l~~~-------------~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~ 539 (755)
+|+.||+| |||+.+++....+... ....|...+..+.|+|++..++++..++.+.+|.........
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 99999999 9999988776665321 012345679999999999999999999988888653311100
Q ss_pred --ccc---cC-------------cccccceee-------------ec--C----CCce----------------------
Q 004404 540 --SLS---LD-------------HMVVPETVF-------------AL--S----DKPI---------------------- 560 (755)
Q Consensus 540 --s~s---~d-------------~~~~~~~v~-------------~~--s----~k~i---------------------- 560 (755)
.+. .. ...+....| .. . ...+
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~ 327 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence 000 00 000000001 00 0 0111
Q ss_pred -------EEec-cCCCCEEEEEecC----------C-cEEEEEeCCCcEEEEECCCCcEEEE-------e-ecCCceEEE
Q 004404 561 -------CSFQ-GHLDDVLDLSWSK----------S-QHLLSSSMDKTVRLWHLSSKTCLKI-------F-SHSDYVTCI 613 (755)
Q Consensus 561 -------~~l~-gH~~~V~~L~~sp----------d-~~LaSgs~DgtVrLWDl~t~~~~~~-------~-~h~~~VtsV 613 (755)
..+. .|...|.++.+.+ + ..+++++.|++|++|++.++..... + .|...|+++
T Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~ 407 (902)
T 2oaj_A 328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS 407 (902)
T ss_dssp HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence 1222 3567788888765 1 2688999999999999987754322 1 133444444
Q ss_pred ----------------------------------EEeeCCCcEEEEEECCCcEEEEECCCCcEE-----Ee--c-----c
Q 004404 614 ----------------------------------QFNPVDDRYFISGSLDAKVRIWSIPERQVV-----DW--N-----D 647 (755)
Q Consensus 614 ----------------------------------afsP~dg~~LaSgS~DgtVrIWDl~t~~~v-----~~--~-----~ 647 (755)
+|+| ++++|++|+.|++|++||+.++.+. .. . .
T Consensus 408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 4567 8899999999999999999876421 11 1 5
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec----------cc-----c---------------------cc
Q 004404 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK----------SP-----I---------------------NL 691 (755)
Q Consensus 648 ~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~----------~~-----i---------------------~~ 691 (755)
|...|++|+|+|+|++||+|+.||+|+||++.+++.... +. + ..
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 678999999999999999999999999999987642100 00 0 00
Q ss_pred ccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceE-----Eee-cCCccEEEEEEE
Q 004404 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVH-----KFK-GENYVQYMVCIV 750 (755)
Q Consensus 692 ~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~-----~~~-GH~~~V~sv~fs 750 (755)
+...+.+|.+.|++++|+|+| +|++|+.|++|+|||. ..++. .+. +|...|++++|+
T Consensus 567 ~~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 567 PSTAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV 631 (902)
T ss_dssp EEEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred eeEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEE
Confidence 113456799999999999999 7999999999999994 33433 243 899999999999
No 49
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=2.7e-30 Score=285.30 Aligned_cols=275 Identities=16% Similarity=0.260 Sum_probs=226.8
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..++++..++.|++|+..+++...... ..|...|++++|+|++++|++|+.||.|+|||+.+++....+ .+
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~ 174 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAE----TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-----AG 174 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEE----CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-----CC
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeee----cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-----cC
Confidence 345677799999999998776543332 238999999999999999999999999999999988877665 46
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC--CCceEEeccCCCCEEEEEecCC-
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS--DKPICSFQGHLDDVLDLSWSKS- 578 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s--~k~i~~l~gH~~~V~~L~~spd- 578 (755)
|...+..+.+ ++..++++..++.+ .+|++. ...+..+.+|...|.+++|+|+
T Consensus 175 ~~~~v~~~~~--~~~~l~~~~~dg~i-----------------------~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 175 HQARVGCLSW--NRHVLSSGSRSGAI-----------------------HHHDVRIANHQIGTLQGHSSEVCGLAWRSDG 229 (401)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEE-----------------------EEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred CCCceEEEEE--CCCEEEEEcCCCCE-----------------------EEEecccCcceeeEEcCCCCCeeEEEEcCCC
Confidence 7778888888 45688888777777 344443 4567788999999999999998
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEE--CCCcEEEEECCCCcEEEeccCCCCEEEE
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS--LDAKVRIWSIPERQVVDWNDLHEMVTAA 655 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS--~DgtVrIWDl~t~~~v~~~~~~~~Vtsv 655 (755)
.+|++++.|+.|++||+.+++++..+. |...|.+++|+|.+..++++++ .|+.|++||+.+++++....+...|.++
T Consensus 230 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~ 309 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL 309 (401)
T ss_dssp SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 789999999999999999999988885 9999999999994446777765 7999999999999998888888999999
Q ss_pred EEccCCCEEEEE--ECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CC
Q 004404 656 CYTPDGQGALVG--SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GI 731 (755)
Q Consensus 656 afSPdG~~LasG--s~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~ 731 (755)
+|+|++++|+++ +.||.|++||+.++....... +.+|...|++++|+|++. +|++++.|+.|++|| .+
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~-------~~~h~~~v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD-------IPAHDTRVLYSALSPDGR-ILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE-------EECCSSCCCEEEECTTSS-EEEEECTTSEEEEEECCC-
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCccceeEEE-------ecCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCC
Confidence 999999999995 489999999999877655432 348999999999999998 899999999999999 35
Q ss_pred cceEEee
Q 004404 732 DLVHKFK 738 (755)
Q Consensus 732 ~ll~~~~ 738 (755)
+.+.+..
T Consensus 382 ~~~~~~~ 388 (401)
T 4aez_A 382 DHVKRPI 388 (401)
T ss_dssp -------
T ss_pred ccccccc
Confidence 5554443
No 50
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=1.2e-29 Score=273.63 Aligned_cols=282 Identities=15% Similarity=0.129 Sum_probs=221.0
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..++++..++.|++|+...++. .....+.+|...|.+++|+|++++|++++.||.|++||+.+++....+. ...
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~ 94 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGNKW---VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV---ILR 94 (372)
T ss_dssp SEEEEECSSSEEEEEEEETTEE---EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE---CCC
T ss_pred CEEEEEeCCCEEEEEeCCCCcE---EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEE---eec
Confidence 4567888999999999876542 2445678999999999999999999999999999999998776443332 245
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cE
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~ 580 (755)
+...+..+.+++++..++++..++.+..+....... . ........+|...|.+++|+|+ .+
T Consensus 95 ~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--------------~----~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 95 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--------------W----WVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--------------E----EEEEEECTTCCSCEEEEEECTTSSE
T ss_pred CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------------c----eeeeeeecccCCCeeEEEEcCCCCE
Confidence 677899999999999999988887774332221000 0 0012233678999999999998 78
Q ss_pred EEEEeCCCcEEEEEC------------------CCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc
Q 004404 581 LLSSSMDKTVRLWHL------------------SSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (755)
Q Consensus 581 LaSgs~DgtVrLWDl------------------~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~ 641 (755)
|++++.|+.|++||+ ..++++..+. |...|++++|+| ++++|++++.|+.|++||+++++
T Consensus 157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCc
Confidence 999999999999995 4678888885 999999999999 99999999999999999999988
Q ss_pred EEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC--Ceeeecccccc------------------------c--
Q 004404 642 VVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE--NKLQQKSPINL------------------------Q-- 692 (755)
Q Consensus 642 ~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~--~~~~~~~~i~~------------------------~-- 692 (755)
++. +..+...|.+++|+|++++|++| .|+.|++|++.. +.......+.. .
T Consensus 236 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (372)
T 1k8k_C 236 AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS 314 (372)
T ss_dssp EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----
T ss_pred eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccC
Confidence 774 44566799999999999988888 899999999988 53211100000 0
Q ss_pred ----cccccCCCCCeEEEEEcc-CC---CeEEEEEECCCcEEEEEC
Q 004404 693 ----NKKKRSHQRKITGFQFAP-GS---SSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 693 ----~~~~~~h~~~Vtsl~fsP-dg---~~~L~sgs~Dg~IrVWD~ 730 (755)
.....+|...|++++|.+ +| . +|++++.||.|+|||.
T Consensus 315 ~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 315 AAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDGGMSIWDV 359 (372)
T ss_dssp ----CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTSEEEEEEH
T ss_pred ccccccccccccCCcceeEEecCCCccee-eEEEecCCCceEEEEe
Confidence 111248999999999774 44 5 8999999999999993
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.98 E-value=1.2e-30 Score=287.33 Aligned_cols=345 Identities=11% Similarity=0.084 Sum_probs=247.2
Q ss_pred HHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeec
Q 004404 342 VQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATD 418 (755)
Q Consensus 342 V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ 418 (755)
++.++|+++ +++++.|++++ +|+..++.....+.. + .+ ..+.+..
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~-i~d~~~~~~~~~~~~-~--~~----------------------------~~~~~~~ 106 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDF-LFNTIIRDGSKMLKR-A--DY----------------------------TAVDTAK 106 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEE-EEECCSEETTTTSCS-C--CE----------------------------EEEEEEC
T ss_pred ccceeeeecCCeEEEEEcCCcEE-EEEecccceeeEEec-C--Cc----------------------------eEEEEEe
Confidence 456788887 88999999999 999877654433331 1 11 1111112
Q ss_pred CCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccc
Q 004404 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (755)
Q Consensus 419 ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~ 498 (755)
.....+++++.++.|++|+...++. .+.+.+|.+.|++++|+|++++|++|+.|++|++||+.+++....+
T Consensus 107 ~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---- 177 (420)
T 3vl1_A 107 LQMRRFILGTTEGDIKVLDSNFNLQ-----REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL---- 177 (420)
T ss_dssp SSSCEEEEEETTSCEEEECTTSCEE-----EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE----
T ss_pred cCCCEEEEEECCCCEEEEeCCCcce-----eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE----
Confidence 2234578889999999999875543 3445799999999999999999999999999999999988877665
Q ss_pred ccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCc--c-cccceeeecCCCceEEeccCCCCEEEEEe
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDH--M-VVPETVFALSDKPICSFQGHLDDVLDLSW 575 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~--~-~~~~~v~~~s~k~i~~l~gH~~~V~~L~~ 575 (755)
.+|...+..+.++|++..++++..++.+.++..........+.... . .+....+. ..........|...|.+++|
T Consensus 178 -~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 178 -IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF-VGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp -ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE-ECCCSSCGGGCCCCCCTTCS
T ss_pred -cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe-cCCcceeeecccCcccceEE
Confidence 5678889999999999999999988888665543221111111000 0 00000000 00000011234566777777
Q ss_pred cCC-cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCc-EEEEEECCCcEEEEECCCCcE--EEecc-C
Q 004404 576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQV--VDWND-L 648 (755)
Q Consensus 576 spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~-~LaSgS~DgtVrIWDl~t~~~--v~~~~-~ 648 (755)
+|+ .+|++++.|+.|++||+.+++.+..+. |...|++++|+| ++. +|++|+.||.|++||+++++. ..+.. +
T Consensus 256 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 334 (420)
T 3vl1_A 256 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG-NNANYIYAGYENGMLAQWDLRSPECPVGEFLINE 334 (420)
T ss_dssp SCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST
T ss_pred cCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeC-CCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC
Confidence 888 679999999999999999998887774 889999999999 777 999999999999999998643 34444 4
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCe--EEEEEECCCcEE
Q 004404 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS--EVLVTSADSRIR 726 (755)
Q Consensus 649 ~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~--~L~sgs~Dg~Ir 726 (755)
...|.++.+ |++++|++++.||.|++|++....................|...|.+++|+|+++. .|++++.++.+.
T Consensus 335 ~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~ 413 (420)
T 3vl1_A 335 GTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCA 413 (420)
T ss_dssp TSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEE
T ss_pred CCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEE
Confidence 567777755 57889999999999999999875332211111111234578899999999999861 477788899999
Q ss_pred EEECC
Q 004404 727 VVDGI 731 (755)
Q Consensus 727 VWD~~ 731 (755)
+|+..
T Consensus 414 ~~~~~ 418 (420)
T 3vl1_A 414 LYNLS 418 (420)
T ss_dssp EEESC
T ss_pred EEecc
Confidence 99853
No 52
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=7.2e-30 Score=270.68 Aligned_cols=245 Identities=17% Similarity=0.249 Sum_probs=199.4
Q ss_pred EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCC--ceeeeeecccccCccccEEEeecCCC--CceeccccCCCc
Q 004404 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES--ERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNH 526 (755)
Q Consensus 451 ~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~--~~~~~l~~~~~~~~~~~v~~v~~s~d--g~~l~~~s~d~~ 526 (755)
.+.+|.+.|++++|+|+|++||||+.|++|+||++... +....+ .+|...+..+.|+++ +.++++++.++.
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-----~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-----TGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-----ccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 46799999999999999999999999999999999753 333333 678889999999864 889999988888
Q ss_pred eeeecccccccccccccCcccccceeeecCC---CceEEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCCCcE
Q 004404 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTC 600 (755)
Q Consensus 527 i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~---k~i~~l~gH~~~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~~~ 600 (755)
+.+ |++.. ..+..+.+|...|.+++|+|+ .+|++++.|++|++||+..+..
T Consensus 79 v~i-----------------------Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 79 VMI-----------------------WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EEE-----------------------EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred EEE-----------------------EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 844 43322 345677889999999999995 5899999999999999987531
Q ss_pred --EEEe-ecCCceEEEEEeeCC-------------CcEEEEEECCCcEEEEECCCCc----EE-EeccCCCCEEEEEEcc
Q 004404 601 --LKIF-SHSDYVTCIQFNPVD-------------DRYFISGSLDAKVRIWSIPERQ----VV-DWNDLHEMVTAACYTP 659 (755)
Q Consensus 601 --~~~~-~h~~~VtsVafsP~d-------------g~~LaSgS~DgtVrIWDl~t~~----~v-~~~~~~~~VtsvafSP 659 (755)
...+ .|...|++++|+| + +++|++|+.|++|+|||+++++ +. .+..|...|.+++|+|
T Consensus 136 ~~~~~~~~h~~~v~~~~~~p-~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp 214 (297)
T 2pm7_B 136 TSPIIIDAHAIGVNSASWAP-ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (297)
T ss_dssp BCCEEEECCSSCEEEEEECC-CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred eeeeeeecccCccceEeecC-CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC
Confidence 2333 4999999999999 5 4799999999999999998765 33 4556788999999999
Q ss_pred CC---CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 660 DG---QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 660 dG---~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
++ ++|++|+.|++|+|||+.......... ......|...|.+++|+|+++ +|++++.|++|+||+
T Consensus 215 ~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT----LLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWK 282 (297)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEE----ESSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEE
T ss_pred CCCCceEEEEEECCCcEEEEEeCCCCCcccee----eeecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEE
Confidence 85 899999999999999998743111000 011236788999999999998 899999999999999
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=3e-30 Score=289.12 Aligned_cols=319 Identities=17% Similarity=0.255 Sum_probs=249.5
Q ss_pred HhcCCcHHH-HHHHhhcc-cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCc
Q 004404 334 MCVGHSPIV-QELMRRQN-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGR 411 (755)
Q Consensus 334 ~~~GHs~~V-~~l~~~~~-~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~ 411 (755)
.+.||...| ..+.+.++ +++|+.|++|+ +||..+++....++ +|...|..+++..+
T Consensus 116 ~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~-vwd~~~~~~~~~~~-~h~~~V~~l~~~~~-------------------- 173 (464)
T 3v7d_B 116 TLRGHMTSVITCLQFEDNYVITGADDKMIR-VYDSINKKFLLQLS-GHDGGVWALKYAHG-------------------- 173 (464)
T ss_dssp EEECCSSSCEEEEEEETTEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEECST--------------------
T ss_pred EEcCCCCCcEEEEEECCCEEEEEcCCCcEE-EEECCCCcEEEEEe-CCCcCEEEEEEcCC--------------------
Confidence 457887664 55556555 89999999999 99998887666655 56666655554321
Q ss_pred eeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEc--CCCCEEEEEECCCcEEEEeCcCCc
Q 004404 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS--LDGRYLASAGEDCVIHVWQVVESE 489 (755)
Q Consensus 412 ~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fS--pdg~~LaTgs~DGtVrVWdl~t~~ 489 (755)
..+++|+.|+.|++|+..+++ ....+.+|.+.|.+++|+ +++.+|++|+.|++|++||+.+..
T Consensus 174 ----------~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~ 238 (464)
T 3v7d_B 174 ----------GILVSGSTDRTVRVWDIKKGC-----CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238 (464)
T ss_dssp ----------TEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC
T ss_pred ----------CEEEEEeCCCCEEEEECCCCc-----EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc
Confidence 157889999999999998654 345678999999999998 578899999999999999998765
Q ss_pred eeeeee------------------cccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccce
Q 004404 490 RKGELL------------------EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET 551 (755)
Q Consensus 490 ~~~~l~------------------~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~ 551 (755)
...... .....++...+..+ ++++..++++..++.+ .
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i-----------------------~ 293 (464)
T 3v7d_B 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTL-----------------------I 293 (464)
T ss_dssp CC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCE-----------------------E
T ss_pred ccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeE-----------------------E
Confidence 433211 00123344444444 4566777777666666 4
Q ss_pred eeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEEC
Q 004404 552 VFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL 628 (755)
Q Consensus 552 v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~ 628 (755)
+|++ +.+++..+.+|...|.+++|+|+ .+|++++.|++|++||+.+++++..+. |...|.+++|+ +.+|++++.
T Consensus 294 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~ 370 (464)
T 3v7d_B 294 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS---DKFLVSAAA 370 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC---SSEEEEEET
T ss_pred EEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc---CCEEEEEeC
Confidence 4544 45677889999999999999998 789999999999999999999999996 99999999996 489999999
Q ss_pred CCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEE
Q 004404 629 DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (755)
Q Consensus 629 DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (755)
||+|++||+.+........+...+..++|+|++++|++|+ ||.|++||+.+++++.... ..|...|++++|
T Consensus 371 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~--------~~~~~~v~~v~~ 441 (464)
T 3v7d_B 371 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI--------LKDADQIWSVNF 441 (464)
T ss_dssp TSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT--------TTTCSEEEEEEE
T ss_pred CCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh--------ccCCCcEEEEEe
Confidence 9999999999988776666777888999999999999998 8999999999999886432 368899999999
Q ss_pred ccCCCeEEEEEECCCcEEEE
Q 004404 709 APGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 709 sPdg~~~L~sgs~Dg~IrVW 728 (755)
+ +..++++++.|+.+.+|
T Consensus 442 ~--~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 442 K--GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp E--TTEEEEEEEETTEEEEE
T ss_pred c--CCEEEEEEEeCCeEEEE
Confidence 7 34355566677765544
No 54
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.9e-30 Score=278.50 Aligned_cols=273 Identities=19% Similarity=0.306 Sum_probs=220.7
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC----CCEEEEEECCCcEEEEeCcCCceeeeeec
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD----GRYLASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd----g~~LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
...++++..++.|++|+..+++............|...|++++|+|+ +++|++|+.||.|+|||+.+++....+
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-- 111 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY-- 111 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE--
T ss_pred CceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee--
Confidence 34456666667999999986655433332233347889999999998 679999999999999999988877665
Q ss_pred ccccCccccEEEeecCC-CCceeccccCCCceeeecccccccccccccCcccccceeeecC-CCceEEe---ccCCCCEE
Q 004404 497 KQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSF---QGHLDDVL 571 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~-dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l---~gH~~~V~ 571 (755)
.+|...+..+.++| ++.+++++..++.+ .+|++. ++.+..+ .+|...|.
T Consensus 112 ---~~~~~~i~~~~~~~~~~~~l~s~~~dg~i-----------------------~iwd~~~~~~~~~~~~~~~~~~~v~ 165 (366)
T 3k26_A 112 ---VGHGNAINELKFHPRDPNLLLSVSKDHAL-----------------------RLWNIQTDTLVAIFGGVEGHRDEVL 165 (366)
T ss_dssp ---ESCCSCEEEEEECSSCTTEEEEEETTSCE-----------------------EEEETTTTEEEEEECSTTSCSSCEE
T ss_pred ---cCCCCcEEEEEECCCCCCEEEEEeCCCeE-----------------------EEEEeecCeEEEEecccccccCcee
Confidence 46788999999999 89999999888877 344443 3455556 68999999
Q ss_pred EEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-----------------------------cCCceEEEEEeeCCCc
Q 004404 572 DLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-----------------------------HSDYVTCIQFNPVDDR 621 (755)
Q Consensus 572 ~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-----------------------------h~~~VtsVafsP~dg~ 621 (755)
+++|+|+ .+|++++.|+.|++||+.+++.+..+. |...|.+++|+ ++
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~ 242 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GD 242 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TT
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CC
Confidence 9999998 789999999999999998765443222 88999999997 47
Q ss_pred EEEEEECCCcEEEEECCCCcE--------------E-EeccCCCCEEEEEEccC--CCEEEEEECCCcEEEEECCCCeee
Q 004404 622 YFISGSLDAKVRIWSIPERQV--------------V-DWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 622 ~LaSgS~DgtVrIWDl~t~~~--------------v-~~~~~~~~VtsvafSPd--G~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
+|++++.|+.|++||+.+... + ....+...|++++|+|+ +++|++|+.||.|++||+.+++..
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 999999999999999987542 3 44566778999999999 999999999999999999988654
Q ss_pred eccccccccccccCC--CCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 685 QKSPINLQNKKKRSH--QRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h--~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
.... ..+..| ...|++++|+|++. +|++++.|+.|+|||.
T Consensus 323 ~~~~-----~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 323 KAKC-----TTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDR 364 (366)
T ss_dssp GCEE-----EEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC
T ss_pred cccc-----eEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEe
Confidence 3211 123355 79999999999998 8999999999999994
No 55
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=2.6e-29 Score=267.55 Aligned_cols=271 Identities=21% Similarity=0.317 Sum_probs=219.6
Q ss_pred eeeeEeecccCCEEEEEEcCC-CCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCC
Q 004404 447 YKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (755)
Q Consensus 447 ~~~q~l~gH~~~I~sI~fSpd-g~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~ 525 (755)
....+|+||.+.|++|+|+|+ +++|||||.|++|+|||+.+.+...........+|...+..+.++|++.+++++..++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 334578999999999999997 6899999999999999998776544433333467889999999999999999998888
Q ss_pred ceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEe
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~ 604 (755)
.+..+... ..........+...+..+.++++ .+|++++.|+.+++||+.........
T Consensus 109 ~i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 109 TLRLWDLT----------------------TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp EEEEEETT----------------------TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred cceEEeec----------------------ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence 77433222 23344556677888999999987 78999999999999999876554443
Q ss_pred --ecCCceEEEEEeeCC-CcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 004404 605 --SHSDYVTCIQFNPVD-DRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (755)
Q Consensus 605 --~h~~~VtsVafsP~d-g~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~ 680 (755)
.|...|.+++|++.. ..++++++.|++|++||+.+++++. +..|...|++++|+|++++|++|+.||.|++||+.+
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence 389999999999822 3578999999999999999998774 456778999999999999999999999999999999
Q ss_pred CeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEe---------ecCCccEEEEEE
Q 004404 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKF---------KGENYVQYMVCI 749 (755)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~---------~GH~~~V~sv~f 749 (755)
.+.+..+ .+...|..+.|+|++ .+++++.|+.|+|||. +.++..+ .+|...|++++|
T Consensus 247 ~~~~~~~----------~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 314 (340)
T 4aow_A 247 GKHLYTL----------DGGDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 314 (340)
T ss_dssp TEEEEEE----------ECSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE
T ss_pred Cceeeee----------cCCceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE
Confidence 8877643 245689999999987 4778888999999993 4444444 478888999998
Q ss_pred EE
Q 004404 750 VL 751 (755)
Q Consensus 750 s~ 751 (755)
.|
T Consensus 315 s~ 316 (340)
T 4aow_A 315 SA 316 (340)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 56
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-30 Score=286.13 Aligned_cols=272 Identities=12% Similarity=0.166 Sum_probs=219.4
Q ss_pred CCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCC----ceeeeeecccccCcc
Q 004404 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES----ERKGELLEKQEDGHL 503 (755)
Q Consensus 428 ~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~----~~~~~l~~~~~~~~~ 503 (755)
+.++.|++|+...++..... .. ..|...|++++|+|++++|++|+.||.|+||++.+. +.... ..+|.
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~--~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~-----~~~h~ 113 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPI--AS-LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMAR-----FSNHS 113 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCS--CC-CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEE-----CCCSS
T ss_pred CCCCeEEEEEccCCCCCcEE--EE-EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhh-----ccCCc
Confidence 88999999999876543211 12 258999999999999999999999999999999872 23333 25677
Q ss_pred ccEEEeecCCC-CceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cE
Q 004404 504 NMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QH 580 (755)
Q Consensus 504 ~~v~~v~~s~d-g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~ 580 (755)
..+..+.++|+ +.+++++..++.+.++.......... .. ....+..+.+|...|.+++|+|+ .+
T Consensus 114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-----~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (416)
T 2pm9_A 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS-----NY--------TPLTPGQSMSSVDEVISLAWNQSLAHV 180 (416)
T ss_dssp SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT-----TC--------CCBCCCCSCCSSCCCCEEEECSSCTTE
T ss_pred cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc-----cc--------cccccccccCCCCCeeEEEeCCCCCcE
Confidence 88999999998 88999998888876554432110000 00 00011234679999999999997 68
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEee-c------CCceEEEEEeeCCC-cEEEEEECCC---cEEEEECCCC-cEEEec--
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFS-H------SDYVTCIQFNPVDD-RYFISGSLDA---KVRIWSIPER-QVVDWN-- 646 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~-h------~~~VtsVafsP~dg-~~LaSgS~Dg---tVrIWDl~t~-~~v~~~-- 646 (755)
|++++.|+.|++||+.+++++..+. + ...|++++|+| ++ .+|++++.|+ .|++||++++ .++...
T Consensus 181 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~ 259 (416)
T 2pm9_A 181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP-KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ 259 (416)
T ss_dssp EEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS-SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS
T ss_pred EEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC-CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec
Confidence 9999999999999999999998886 3 78999999999 65 7999999999 9999999986 444433
Q ss_pred cCCCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcE
Q 004404 647 DLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (755)
Q Consensus 647 ~~~~~VtsvafSP-dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~I 725 (755)
.|...|++++|+| ++++|++++.||.|++||+.+++.+..+ ..|...|++++|+|+++.+|++++.|+.|
T Consensus 260 ~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF---------PARGNWCFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE---------ECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee---------cCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence 5778999999999 9999999999999999999998877653 37899999999999984489999999999
Q ss_pred EEEEC
Q 004404 726 RVVDG 730 (755)
Q Consensus 726 rVWD~ 730 (755)
+|||.
T Consensus 331 ~iw~~ 335 (416)
T 2pm9_A 331 EVQTL 335 (416)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 99993
No 57
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=7.2e-30 Score=278.68 Aligned_cols=270 Identities=15% Similarity=0.147 Sum_probs=220.1
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
.++++|+.++.|++|+...++..... .+.+|.+.|.+++|+| ++++|++++.|+.|++||+.. .....+. ...
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~--~~~ 160 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFI---QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFA--KTD 160 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEE---CCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEE--CCC
T ss_pred CEEEEEcCCCeEEEEeCCCcccceee---ecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEe--ccC
Confidence 56788899999999999876644322 2357999999999999 789999999999999999985 3333332 123
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-c
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~ 579 (755)
.+...+..+.++|++..++++..++.+ .+|++.++++..+.+|...|.+++|+|+ .
T Consensus 161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i-----------------------~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 161 SWDYWYCCVDVSVSRQMLATGDSTGRL-----------------------LLLGLDGHEIFKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp CSSCCEEEEEEETTTTEEEEEETTSEE-----------------------EEEETTSCEEEEEECSSSCEEEEEECSSCT
T ss_pred CCCCCeEEEEECCCCCEEEEECCCCCE-----------------------EEEECCCCEEEEeccCCCcEEEEEECCCCC
Confidence 455778999999999999999888877 5677777888999999999999999998 4
Q ss_pred -EEEEEeCCCcEEEEECCC----CcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccC-----
Q 004404 580 -HLLSSSMDKTVRLWHLSS----KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDL----- 648 (755)
Q Consensus 580 -~LaSgs~DgtVrLWDl~t----~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~----- 648 (755)
+|++++.|++|++||+.+ +.++..+.|...|++++|+|.++.+|++++.|+.|++||+++++.. .+..+
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 899999999999999997 7788888999999999999967899999999999999999886643 22211
Q ss_pred ------------CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEE
Q 004404 649 ------------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (755)
Q Consensus 649 ------------~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L 716 (755)
...+..++|+|++++ +|+.||.|++||+.+++.+..+.. ..|...+..++|+|++. +|
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~-------~~~~~~~~~~~~s~~g~-~l 367 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD-------PNAAGIISLNKFSPTGD-VL 367 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB-------TTBCSCCCEEEECTTSS-EE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC-------CCCCceEEEEEEecCcc-EE
Confidence 134555677777766 777899999999999988765431 13667788889999998 78
Q ss_pred EEEECCCcEEEEECC
Q 004404 717 LVTSADSRIRVVDGI 731 (755)
Q Consensus 717 ~sgs~Dg~IrVWD~~ 731 (755)
++++ |+.|+|||..
T Consensus 368 ~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 368 ASGM-GFNILIWNRE 381 (383)
T ss_dssp EEEE-TTEEEEEECC
T ss_pred EEec-CCcEEEEecC
Confidence 8887 9999999953
No 58
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.2e-29 Score=283.65 Aligned_cols=316 Identities=16% Similarity=0.286 Sum_probs=254.9
Q ss_pred HhcCCcHHH-HHHHhhcc-cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCc
Q 004404 334 MCVGHSPIV-QELMRRQN-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGR 411 (755)
Q Consensus 334 ~~~GHs~~V-~~l~~~~~-~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~ 411 (755)
.+.||...| ..+.+..+ +++|+.|++|+ +|+..++.....++ +|...|..+++
T Consensus 113 ~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~-vwd~~~~~~~~~~~-~h~~~v~~~~~----------------------- 167 (445)
T 2ovr_B 113 VLKGHDDHVITCLQFCGNRIVSGSDDNTLK-VWSAVTGKCLRTLV-GHTGGVWSSQM----------------------- 167 (445)
T ss_dssp EEECSTTSCEEEEEEETTEEEEEETTSCEE-EEETTTCCEEEECC-CCSSCEEEEEE-----------------------
T ss_pred EecccCCCcEEEEEEcCCEEEEEECCCcEE-EEECCCCcEEEEEc-CCCCCEEEEEe-----------------------
Confidence 457887754 45555555 89999999999 99998887665554 45444433332
Q ss_pred eeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCcee
Q 004404 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK 491 (755)
Q Consensus 412 ~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~ 491 (755)
....+++|+.|+.|++|+..+++. ...+.+|...|.++.|+ +++|++|+.||+|++||+.+++..
T Consensus 168 --------~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~ 232 (445)
T 2ovr_B 168 --------RDNIIISGSTDRTLKVWNAETGEC-----IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL 232 (445)
T ss_dssp --------ETTEEEEEETTSCEEEEETTTTEE-----EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE
T ss_pred --------cCCEEEEEeCCCeEEEEECCcCcE-----EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE
Confidence 134688999999999999986643 45677999999999996 678999999999999999988877
Q ss_pred eeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCE
Q 004404 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDV 570 (755)
Q Consensus 492 ~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V 570 (755)
..+ .++...+.++.+ ++..++++..++.+. +|+. .++++..+.+|...|
T Consensus 233 ~~~-----~~~~~~v~~~~~--~~~~l~~~~~dg~i~-----------------------iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 233 HVL-----MGHVAAVRCVQY--DGRRVVSGAYDFMVK-----------------------VWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp EEE-----ECCSSCEEEEEE--CSSCEEEEETTSCEE-----------------------EEEGGGTEEEEEECCCSSCE
T ss_pred EEE-----cCCcccEEEEEE--CCCEEEEEcCCCEEE-----------------------EEECCCCcEeEEecCCCCce
Confidence 665 456677777777 677788887777763 3333 346677889999999
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc--
Q 004404 571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-- 647 (755)
Q Consensus 571 ~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-- 647 (755)
.++.| ...++++++.|++|++||+.+++++..+. |...+.++.++ +++|++|+.||.|++||+++++.+....
T Consensus 283 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 358 (445)
T 2ovr_B 283 YSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGP 358 (445)
T ss_dssp EEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred EEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEccC
Confidence 99999 45889999999999999999999999886 88999988875 5799999999999999999998875554
Q ss_pred --CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCc-
Q 004404 648 --LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR- 724 (755)
Q Consensus 648 --~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~- 724 (755)
+...|++++|+ +++|++|+.||.|++||+.+++.+..+.. .....|...|++++|+|++. +|++++.||+
T Consensus 359 ~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~-~la~~~~dg~~ 431 (445)
T 2ovr_B 359 NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT----LESGGSGGVVWRIRASNTKL-VCAVGSRNGTE 431 (445)
T ss_dssp TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE----CTTGGGTCEEEEEEECSSEE-EEEEECSSSSS
T ss_pred CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeec----cccCCCCceEEEEEecCCEE-EEEEcccCCCC
Confidence 66789999996 67999999999999999999988765421 11236888999999999986 8999999998
Q ss_pred ---EEEEEC
Q 004404 725 ---IRVVDG 730 (755)
Q Consensus 725 ---IrVWD~ 730 (755)
|.|||-
T Consensus 432 ~~~l~v~df 440 (445)
T 2ovr_B 432 ETKLLVLDF 440 (445)
T ss_dssp CCEEEEEEC
T ss_pred ccEEEEEEC
Confidence 999994
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=4.3e-29 Score=279.68 Aligned_cols=307 Identities=17% Similarity=0.286 Sum_probs=243.0
Q ss_pred eecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeee
Q 004404 416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (755)
Q Consensus 416 ~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~ 495 (755)
+.......+++|+.|+.|++|+..+++ ....+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++....+
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~- 199 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF- 199 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCc-----EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-
Confidence 333345688999999999999987655 345677999999999999988 9999999999999999998877665
Q ss_pred cccccCccccEEEeecC--CCCceeccccCCCceeeecccccccccccccCcccccceeee--cCCCceEEeccCCCCEE
Q 004404 496 EKQEDGHLNMLLLANGS--PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA--LSDKPICSFQGHLDDVL 571 (755)
Q Consensus 496 ~~~~~~~~~~v~~v~~s--~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~--~s~k~i~~l~gH~~~V~ 571 (755)
.+|...+..+.+. +++..++++..++.+..+................. ...... .....+..+.+|...|.
T Consensus 200 ----~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~ 274 (464)
T 3v7d_B 200 ----EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVLRGHMASVR 274 (464)
T ss_dssp ----CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS-SEEESCGGGCTTEEEEECCCSSCEE
T ss_pred ----CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc-ceEeeccCCCeEEEEEccCccceEE
Confidence 4677888888777 57889999999998877765542211111000000 000000 11224667889999999
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCC
Q 004404 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLH 649 (755)
Q Consensus 572 ~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~ 649 (755)
++... ..+|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++|+.|++|++||+.+++++. +..|.
T Consensus 275 ~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~ 352 (464)
T 3v7d_B 275 TVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHT 352 (464)
T ss_dssp EEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC
Confidence 98543 3789999999999999999999999886 999999999999 99999999999999999999998874 45677
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
..|.+++|+ +++|++|+.||.|++||+.++...... .|...+..++|+|++. +|++++ |+.|+|||
T Consensus 353 ~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY----------HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYN 418 (464)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE----------ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEE
T ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee----------cCCCCccEEEEEeCCC-EEEEec-CCeEEEEE
Confidence 899999997 579999999999999999987655432 3566778889999987 788777 89999999
Q ss_pred --CCcceEE-eecCCccEEEEEEE
Q 004404 730 --GIDLVHK-FKGENYVQYMVCIV 750 (755)
Q Consensus 730 --~~~ll~~-~~GH~~~V~sv~fs 750 (755)
.++++.+ +.+|...|.+++|.
T Consensus 419 ~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 419 LRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp TTTCCEEESCTTTTCSEEEEEEEE
T ss_pred CCCCcEEehhhccCCCcEEEEEec
Confidence 5777775 67888889998874
No 60
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=3.7e-29 Score=263.76 Aligned_cols=268 Identities=18% Similarity=0.324 Sum_probs=215.1
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCc
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
+++.| .|++|++||..+++....+ .+.+|...|++|+|+|++++||||+.||+|+||++.+++....+ .+|
T Consensus 38 ~lAvg-~D~tV~iWd~~tg~~~~~~---~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~-----~~h 108 (318)
T 4ggc_A 38 VLAVA-LDNSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-----TSH 108 (318)
T ss_dssp EEEEE-ETTEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----ECC
T ss_pred EEEEE-eCCEEEEEECCCCCEEEEE---EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-----cCc
Confidence 55555 4899999999887654433 35689999999999999999999999999999999999877765 345
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEE
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL 581 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~L 581 (755)
...+.... +++.+++++..++.+..+... .....+..+.+|...+..+.+.++ .+|
T Consensus 109 ~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 109 SARVGSLS--WNSYILSSGSRSGHIHHHDVR---------------------VAEHHVATLSGHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp SSCEEEEE--EETTEEEEEETTSEEEEEETT---------------------SSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred cceEEEee--cCCCEEEEEecCCceEeeecC---------------------CCceeEEEEcCccCceEEEEEcCCCCEE
Confidence 55554443 345667776666554222111 123456778899999999999998 789
Q ss_pred EEEeCCCcEEEEECCCCcEE-----EEeecCCceEEEEEeeCCCcEE--EEEECCCcEEEEECCCCcEEEeccCCCCEEE
Q 004404 582 LSSSMDKTVRLWHLSSKTCL-----KIFSHSDYVTCIQFNPVDDRYF--ISGSLDAKVRIWSIPERQVVDWNDLHEMVTA 654 (755)
Q Consensus 582 aSgs~DgtVrLWDl~t~~~~-----~~~~h~~~VtsVafsP~dg~~L--aSgS~DgtVrIWDl~t~~~v~~~~~~~~Vts 654 (755)
++++.|++|++||+.+++.. ....+...|.+++++|.+...+ ++++.+++|++||...........+...+..
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~ 245 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 245 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEE
T ss_pred EEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeee
Confidence 99999999999999876532 2224888999999999444544 4567789999999999998888888899999
Q ss_pred EEEccCCCEEEEEE--CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECCc
Q 004404 655 ACYTPDGQGALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (755)
Q Consensus 655 vafSPdG~~LasGs--~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~~ 732 (755)
++|+|++..+++++ .|+.|++||+.+++++..+ .+|...|++++|+|++. +|++++.|++|+|||..+
T Consensus 246 ~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l---------~gH~~~V~~l~~spdg~-~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL---------KGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE---------CCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSC
T ss_pred eeecccccceEEEEEcCCCEEEEEECCCCcEEEEE---------cCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Confidence 99999999988765 7999999999999887653 48999999999999998 899999999999999643
No 61
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=7.5e-31 Score=287.53 Aligned_cols=295 Identities=15% Similarity=0.128 Sum_probs=211.3
Q ss_pred HHHHHhhcc---cccCCCCC-------ccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCc
Q 004404 342 VQELMRRQN---VEEGNKDS-------FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGR 411 (755)
Q Consensus 342 V~~l~~~~~---~~sgs~D~-------tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~ 411 (755)
|.+++|+++ +++|+.|. .|+ +|+...+....... ...+. ...+.++.+.. ......+.
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~-~w~~~~~~~~~~~~---~~~~~--~~~l~~~~~~v------~s~~~~~~ 84 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLT-VLRVDPTKDTEKEQ---FHILS--EFALEDNDDSP------TAIDASKG 84 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEE-EEEECTTSSSHHHH---EEEEE--EEECCTTSCCC------CEEEEETT
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEE-EEEEcCCCcceeee---eeeee--EEEccCCCCce------EEEEeCCC
Confidence 667888888 77776554 488 89886654322211 00011 11122221111 11112233
Q ss_pred eeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccce--eee--eEeecccCCEEEEEEcCCCCEEEEEE--CCCcEEEEeC
Q 004404 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL--YKC--QEIQAHNGSIWSIKFSLDGRYLASAG--EDCVIHVWQV 485 (755)
Q Consensus 412 ~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~--~~~--q~l~gH~~~I~sI~fSpdg~~LaTgs--~DGtVrVWdl 485 (755)
.++.+..++...++++..+..+|+|+....+.... ... .....+...+.+++|+|||++||+++ .|++|+|||+
T Consensus 85 ~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~ 164 (365)
T 4h5i_A 85 IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDP 164 (365)
T ss_dssp EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEET
T ss_pred EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeEC
Confidence 45555555556677888899999998765432211 111 11234566799999999999987654 7899999998
Q ss_pred cCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEecc
Q 004404 486 VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565 (755)
Q Consensus 486 ~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~g 565 (755)
.+++.+.. + .
T Consensus 165 ~~~~~~~~---------------------------------------------------------------------~-~ 174 (365)
T 4h5i_A 165 SDLTEKFE---------------------------------------------------------------------I-E 174 (365)
T ss_dssp TTTEEEEE---------------------------------------------------------------------E-E
T ss_pred CCCcEEEE---------------------------------------------------------------------e-C
Confidence 76543222 2 2
Q ss_pred CCCCEEEEEecCCc-EEEEEeCCCcEEEEECCCCcEEEEe---ecCCceEEEEEeeCCCcEEEEEECCC----cEEEEEC
Q 004404 566 HLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDDRYFISGSLDA----KVRIWSI 637 (755)
Q Consensus 566 H~~~V~~L~~spd~-~LaSgs~DgtVrLWDl~t~~~~~~~---~h~~~VtsVafsP~dg~~LaSgS~Dg----tVrIWDl 637 (755)
|...|++|+|+|++ +|++++ ++.+++|+..+++.+... .|...|.+++|+| ++.++++++.|+ ++++|++
T Consensus 175 ~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~ 252 (365)
T 4h5i_A 175 TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISI 252 (365)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEE
T ss_pred CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeeccc
Confidence 66779999999994 555555 666778887777766543 2888999999999 999999999887 6889998
Q ss_pred CCCcEE-----EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 638 PERQVV-----DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 638 ~t~~~v-----~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
...... ....+...|++++|+|+|++||+|+.|+.|+|||+.+++++..+ +.+|...|++|+|+|+|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~--------~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 253 KSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF--------KQAHSFAITEVTISPDS 324 (365)
T ss_dssp ETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE--------TTSSSSCEEEEEECTTS
T ss_pred ccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe--------cCcccCCEEEEEECCCC
Confidence 776532 34567789999999999999999999999999999999887643 34899999999999999
Q ss_pred CeEEEEEECCCcEEEEE
Q 004404 713 SSEVLVTSADSRIRVVD 729 (755)
Q Consensus 713 ~~~L~sgs~Dg~IrVWD 729 (755)
+ +|+++|.|++|||||
T Consensus 325 ~-~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 325 T-YVASVSAANTIHIIK 340 (365)
T ss_dssp C-EEEEEETTSEEEEEE
T ss_pred C-EEEEEeCCCeEEEEE
Confidence 8 899999999999999
No 62
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=3.2e-29 Score=268.35 Aligned_cols=279 Identities=15% Similarity=0.194 Sum_probs=217.8
Q ss_pred CCcEEEEeCC---CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC---CCEEEEEECCCcEEEEeCcCCc-eee
Q 004404 420 SQDVSFHGQE---RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD---GRYLASAGEDCVIHVWQVVESE-RKG 492 (755)
Q Consensus 420 s~~~l~sg~~---dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd---g~~LaTgs~DGtVrVWdl~t~~-~~~ 492 (755)
+..++++|+. ++.|++|+...++..... ..+|...|.+++|+|+ +++|++|+.||.|++|++.+++ ...
T Consensus 30 ~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 105 (357)
T 3i2n_A 30 SAKFVTMGNFARGTGVIQLYEIQHGDLKLLR----EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY 105 (357)
T ss_dssp SSEEEEEEC--CCCEEEEEEEECSSSEEEEE----EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE
T ss_pred CceEEEecCccCCCcEEEEEeCCCCccccee----eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE
Confidence 3455667776 999999999876644322 2379999999999998 6999999999999999998877 444
Q ss_pred eeecccccCccccEEEe------ecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC--CceEEec
Q 004404 493 ELLEKQEDGHLNMLLLA------NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQ 564 (755)
Q Consensus 493 ~l~~~~~~~~~~~v~~v------~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~--k~i~~l~ 564 (755)
.+ .+|...+..+ ++++++..++++..++.+. +|++.. .++..+.
T Consensus 106 ~~-----~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~-----------------------vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 106 SV-----KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK-----------------------VWDPRQKDDPVANME 157 (357)
T ss_dssp EE-----CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE-----------------------EECTTSCSSCSEEEC
T ss_pred EE-----EecccceEEEeeccccccCCCccEEEEEeCCCeEE-----------------------EEeCCCCCCcceecc
Confidence 43 4666777777 6688999999998888774 444322 2456666
Q ss_pred cCCC----CEEEEE----ecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeC--CCcEEEEEECCCcEE
Q 004404 565 GHLD----DVLDLS----WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV--DDRYFISGSLDAKVR 633 (755)
Q Consensus 565 gH~~----~V~~L~----~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~--dg~~LaSgS~DgtVr 633 (755)
.|.+ .|.+++ |+|+ .+|++++.|+.|++||+.+++......|...|.+++|+|. ++.+|++++.||.|+
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 5554 799998 6676 7899999999999999999998888889999999999985 578999999999999
Q ss_pred EEECCCCcEE------EeccCCCCEEEEEEccCCC-EEEEEECCCcEEEEECCCCeeeeccccc----------cccccc
Q 004404 634 IWSIPERQVV------DWNDLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPIN----------LQNKKK 696 (755)
Q Consensus 634 IWDl~t~~~v------~~~~~~~~VtsvafSPdG~-~LasGs~DG~I~lwDl~~~~~~~~~~i~----------~~~~~~ 696 (755)
+||+++++.. ....+...|++++|+|+++ +|++|+.||.|++||+..+......... .....+
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 9999875432 2236788999999999998 8999999999999999876433211000 011234
Q ss_pred cCCCCCeEEEEEccCCCeEEE-EEECCCcEEEEECC
Q 004404 697 RSHQRKITGFQFAPGSSSEVL-VTSADSRIRVVDGI 731 (755)
Q Consensus 697 ~~h~~~Vtsl~fsPdg~~~L~-sgs~Dg~IrVWD~~ 731 (755)
.+|...|++++|+|+++ +|+ +++.|+.|+|||..
T Consensus 318 ~~~~~~v~~~~~s~~~~-~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 318 TLSTQPISSLDWSPDKR-GLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp ECCSSCEEEEEECSSST-TEEEEEETTSEEEEEEEC
T ss_pred ccCCCCeeEEEEcCCCC-eEEEEecCCCcEEEEECC
Confidence 58999999999999998 465 89999999999943
No 63
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.4e-30 Score=291.33 Aligned_cols=269 Identities=14% Similarity=0.174 Sum_probs=212.3
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
.++++|+.||.|++||+..++.... ..+.+|.+.|++|+|+| ++.+|+||+.||+|+|||+.+..... +. ...
T Consensus 133 ~~lasGs~dg~i~lWd~~~~~~~~~---~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~--~~~ 206 (435)
T 4e54_B 133 STVAVGSKGGDIMLWNFGIKDKPTF---IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV-FA--SSD 206 (435)
T ss_dssp TCEEEEETTSCEEEECSSCCSCCEE---ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE-EE--CCS
T ss_pred CEEEEEeCCCEEEEEECCCCCceeE---EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeE-Ee--ccC
Confidence 4578999999999999987664332 34678999999999998 78999999999999999997654322 21 122
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-- 578 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-- 578 (755)
.+...+..+.+++++.+++++..++.+ .+|++.++.+..+.+|...|++++|+|+
T Consensus 207 ~~~~~~~~~~~~~~~~~l~~g~~dg~i-----------------------~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 207 TINIWFCSLDVSASSRMVVTGDNVGNV-----------------------ILLNMDGKELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp SCSCCCCCEEEETTTTEEEEECSSSBE-----------------------EEEESSSCBCCCSBCCSSCEEEEEECTTCS
T ss_pred CCCccEEEEEECCCCCEEEEEeCCCcE-----------------------eeeccCcceeEEEecccceEEeeeecCCCc
Confidence 334456678899999999999888877 5667777788889999999999999997
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEe----ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCC----
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIF----SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLH---- 649 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~----~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~---- 649 (755)
.+|++++.|++|+|||+++.+....+ .|...|++++|+| ++.+|++++.|++|+|||+.++.... ...+.
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 342 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF 342 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC
T ss_pred eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEEeccccccc
Confidence 47889999999999999876544333 4899999999999 99999999999999999999877553 32222
Q ss_pred --CCEEEEEEccCCCEEEEEE------------CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEE-EEccCCCe
Q 004404 650 --EMVTAACYTPDGQGALVGS------------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF-QFAPGSSS 714 (755)
Q Consensus 650 --~~VtsvafSPdG~~LasGs------------~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl-~fsPdg~~ 714 (755)
..+..+.|+|++.+++++. .++.|++||+.+++.+..+. .+|...|.++ +|+|+|.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~--------~~~~~~v~s~~~fspdg~- 413 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY--------DPESSGISSLNEFNPMGD- 413 (435)
T ss_dssp SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC--------CSSCCCCCCEEEECTTSS-
T ss_pred ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe--------CCCCCcEEEEEEECCCCC-
Confidence 1344567777777777664 23579999999998776432 3688889887 6999997
Q ss_pred EEEEEECCCcEEEEEC
Q 004404 715 EVLVTSADSRIRVVDG 730 (755)
Q Consensus 715 ~L~sgs~Dg~IrVWD~ 730 (755)
+|++| .|++|+|||.
T Consensus 414 ~lasg-~d~~i~iW~~ 428 (435)
T 4e54_B 414 TLASA-MGYHILIWSQ 428 (435)
T ss_dssp CEEEE-CSSEEEECCC
T ss_pred EEEEE-cCCcEEEEEC
Confidence 56665 5889999994
No 64
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-28 Score=257.61 Aligned_cols=260 Identities=19% Similarity=0.267 Sum_probs=215.4
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..+++++.++.|++|+...++. ...+..|...|.+++|+|++++|++++.||.|++|++........+. ...+
T Consensus 30 ~~l~s~~~dg~v~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~--~~~~ 102 (313)
T 3odt_A 30 SKVASVSRDGTVRLWSKDDQWL-----GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY--TLIG 102 (313)
T ss_dssp TEEEEEETTSEEEEEEESSSEE-----EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C--EECC
T ss_pred CEEEEEEcCCcEEEEECCCCEE-----EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc--chhh
Confidence 3478889999999999865442 34567899999999999999999999999999999987653222111 1255
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC-C-c
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S-Q 579 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp-d-~ 579 (755)
|...+..+.+ ++..++++..++.+ .+|+ ..+.+..+..|...|.+++|.| + .
T Consensus 103 ~~~~i~~~~~--~~~~l~~~~~d~~i-----------------------~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 103 HQGNVCSLSF--QDGVVISGSWDKTA-----------------------KVWK-EGSLVYNLQAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEE-----------------------EEEE-TTEEEEEEECCSSCEEEEEEEETTTT
T ss_pred cccCEEEEEe--cCCEEEEEeCCCCE-----------------------EEEc-CCcEEEecccCCCceeEEEEccCCCC
Confidence 6777888877 56677777777776 3444 5567788899999999999988 4 8
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEE
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAAC 656 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~Vtsva 656 (755)
+|++++.|+.|++|| ..+....+. |...|.+++|+| ++. |++++.|+.|++||+++++++. +..+...|++++
T Consensus 157 ~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 157 KFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK 232 (313)
T ss_dssp EEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence 999999999999999 455666664 899999999999 777 9999999999999999988774 445778999999
Q ss_pred EccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 657 fSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
|+|++ .|++++.||.|++||+.+++....+ ..|...|++++|+|++. +++++.|+.|++||.
T Consensus 233 ~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~---------~~~~~~i~~~~~~~~~~--~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 233 LLPNG-DIVSCGEDRTVRIWSKENGSLKQVI---------TLPAISIWSVDCMSNGD--IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp ECTTS-CEEEEETTSEEEEECTTTCCEEEEE---------ECSSSCEEEEEECTTSC--EEEEETTSCEEEEES
T ss_pred EecCC-CEEEEecCCEEEEEECCCCceeEEE---------eccCceEEEEEEccCCC--EEEEeCCCcEEEEeC
Confidence 99999 6899999999999999999877654 36888999999999986 778999999999993
No 65
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.2e-30 Score=280.20 Aligned_cols=275 Identities=10% Similarity=0.110 Sum_probs=207.9
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc---eeeeeeccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE---RKGELLEKQ 498 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~---~~~~l~~~~ 498 (755)
..+++++.++.|++|+...+.. ...+.+.+|.+.|++++|+|++++|++++.|++|+|||+.+++ ....
T Consensus 24 ~~l~~~~~d~~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~----- 95 (377)
T 3dwl_C 24 TEFVTTTATNQVELYEQDGNGW---KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLV----- 95 (377)
T ss_dssp SEEECCCSSSCBCEEEEETTEE---EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEE-----
T ss_pred CEEEEecCCCEEEEEEccCCce---EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeE-----
Confidence 4567888999999999875521 2345578999999999999999999999999999999998876 2222
Q ss_pred ccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCC----ceEEecc-CCCCEEEE
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK----PICSFQG-HLDDVLDL 573 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k----~i~~l~g-H~~~V~~L 573 (755)
...|...+..+.++|++..++++..++.+.+ |++... .+..+.+ |...|+++
T Consensus 96 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i-----------------------wd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 96 LLRLNRAATFVRWSPNEDKFAVGSGARVISV-----------------------CYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp CCCCSSCEEEEECCTTSSCCEEEESSSCEEE-----------------------CCC-----CCCCEEECSSCCSCEEEE
T ss_pred ecccCCceEEEEECCCCCEEEEEecCCeEEE-----------------------EEECCcccceeeeEeecccCCCeEEE
Confidence 2567788999999999999999988887743 333222 3566777 99999999
Q ss_pred EecCC-cEEEEEeCCCcEEEEECC------------------CCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEE
Q 004404 574 SWSKS-QHLLSSSMDKTVRLWHLS------------------SKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (755)
Q Consensus 574 ~~spd-~~LaSgs~DgtVrLWDl~------------------t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrI 634 (755)
+|+|+ .+|++++.|++|++||+. .++++..+.|...|++++|+| ++++|++++.|++|++
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP-SGNALAYAGHDSSVTI 231 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECT-TSSCEEEEETTTEEC-
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECC-CCCEEEEEeCCCcEEE
Confidence 99998 789999999999999985 345666667999999999999 9999999999999999
Q ss_pred EECCCCcE----E-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccc-------------------
Q 004404 635 WSIPERQV----V-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN------------------- 690 (755)
Q Consensus 635 WDl~t~~~----v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~------------------- 690 (755)
||+.+++. + .+..+...|.+++|+|++++|++|+.++.+ +|+...........+.
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGRE 310 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCC
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccc
Confidence 99998875 3 455677899999999999999998766655 6666532211000000
Q ss_pred -------------c-----------ccccccCCCCCeEEEEEccCCCe---EEEEEECCCcEEEEE
Q 004404 691 -------------L-----------QNKKKRSHQRKITGFQFAPGSSS---EVLVTSADSRIRVVD 729 (755)
Q Consensus 691 -------------~-----------~~~~~~~h~~~Vtsl~fsPdg~~---~L~sgs~Dg~IrVWD 729 (755)
+ .......|...|+++++.+.... .|++++.||+|+|||
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 311 EEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp C-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 0 00112249999999998775443 699999999999998
No 66
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-30 Score=284.14 Aligned_cols=312 Identities=10% Similarity=0.088 Sum_probs=228.2
Q ss_pred ccCCCCCCccccccCCcccccceeEEee-ccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCC
Q 004404 363 NNGSSGGGMKSKKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCK 441 (755)
Q Consensus 363 ~Wd~~~g~~~~k~k~~~~~~v~sv~~s~-~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~ 441 (755)
.|+ .+|.....+..+|...|.++++++ ++ ..+++|+.|+.|++|+....
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~-----------------------------~~l~s~s~dg~v~vwd~~~~ 96 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGET-----------------------------PYLITGSDQGVIKIWNLKEI 96 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSS-----------------------------CEEEEEETTSEEEEEEHHHH
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCC-----------------------------CEEEEecCCceEEEeECccc
Confidence 365 345555555446666776666665 32 45788899999999998752
Q ss_pred cccceee-eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCc---CCceeeeeecc-------cccCccccEEEee
Q 004404 442 DLTALYK-CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV---ESERKGELLEK-------QEDGHLNMLLLAN 510 (755)
Q Consensus 442 ~~~~~~~-~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~---t~~~~~~l~~~-------~~~~~~~~v~~v~ 510 (755)
+....+. ...+ +|.+.|++|+|+|++++|++|+.||+|+|||+. +++....+... ...++...+..+.
T Consensus 97 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 175 (437)
T 3gre_A 97 IVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMR 175 (437)
T ss_dssp HTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEE
T ss_pred ccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEE
Confidence 2111111 2222 599999999999999999999999999999995 44333222100 0000233344443
Q ss_pred --cCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEecc--CCCCEEEEEecCC-cEEEEE
Q 004404 511 --GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG--HLDDVLDLSWSKS-QHLLSS 584 (755)
Q Consensus 511 --~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~g--H~~~V~~L~~spd-~~LaSg 584 (755)
+++++.+++++..++.+ .+|++ ..+++..+.+ |...|++++|+|+ .+|+++
T Consensus 176 ~~~~~~~~~l~~~~~d~~i-----------------------~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 232 (437)
T 3gre_A 176 AFVNEEKSLLVALTNLSRV-----------------------IIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILG 232 (437)
T ss_dssp EEECSSCEEEEEEETTSEE-----------------------EEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeE-----------------------EEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEE
Confidence 56778888888887777 44554 4567778887 8999999999998 789999
Q ss_pred eCCCcEEEEECCCCcEEEEe--ecCCceEEEEEeeC---CCcEEEEEECCCcEEEEECCCCcEEEecc------------
Q 004404 585 SMDKTVRLWHLSSKTCLKIF--SHSDYVTCIQFNPV---DDRYFISGSLDAKVRIWSIPERQVVDWND------------ 647 (755)
Q Consensus 585 s~DgtVrLWDl~t~~~~~~~--~h~~~VtsVafsP~---dg~~LaSgS~DgtVrIWDl~t~~~v~~~~------------ 647 (755)
+.|++|++||+++++++..+ .|...|++++|+|. ++.+|++|+.|++|+|||+++++++..+.
T Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 312 (437)
T 3gre_A 233 TTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFL 312 (437)
T ss_dssp ETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGS
T ss_pred cCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceec
Confidence 99999999999999999987 47889999977651 57799999999999999999988764332
Q ss_pred ---------------CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccc----------------------
Q 004404 648 ---------------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN---------------------- 690 (755)
Q Consensus 648 ---------------~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~---------------------- 690 (755)
+...|++++|+ ++++|++|+.||.|++||+.+++....+.-.
T Consensus 313 ~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 313 PIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp CBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred ccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe
Confidence 34468899999 7799999999999999999988765543210
Q ss_pred ------cccccccCCCCCeEEEEEccC-CCeEEEEEECCCcEEEEE
Q 004404 691 ------LQNKKKRSHQRKITGFQFAPG-SSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 691 ------~~~~~~~~h~~~Vtsl~fsPd-g~~~L~sgs~Dg~IrVWD 729 (755)
........|...|++++|+++ +..+|++|+.||.|+||+
T Consensus 392 ~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000112349999999999998 234899999999999995
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-28 Score=259.43 Aligned_cols=265 Identities=15% Similarity=0.230 Sum_probs=221.9
Q ss_pred eeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCC
Q 004404 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (755)
Q Consensus 446 ~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~ 525 (755)
....+.+.+|.+.|++|+| |++++|++|+.||.|+|||+.+++....+ ..+...+..+.++|++..++++..++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-----YTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-----EECSSCEEEEEEETTTTEEEEEETTS
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-----ecCCccEEEEEECCCCCEEEEecCCC
Confidence 3445678999999999999 99999999999999999999877666554 45577899999999999999998888
Q ss_pred ceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~ 605 (755)
.+..+..... ...+++..+.+|...|.+++|. .++|++++.|+.|++|| .++.+..+.
T Consensus 82 ~i~~~~~~~~-------------------~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 82 MINGVPLFAT-------------------SGEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp CEEEEETTCC-------------------TTSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred eEEEEEeeec-------------------CCCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence 7743332210 1235577788999999999994 57899999999999999 666777775
Q ss_pred -cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCee
Q 004404 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (755)
Q Consensus 606 -h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~ 683 (755)
|...|.+++|.|.++++|++++.|+.|++||.... ...+.. +...+.+++|+|++. |++++.||.|++||+.+++.
T Consensus 140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence 99999999999878899999999999999994332 223333 778999999999998 99999999999999999887
Q ss_pred eeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+..+ ..|...|++++|+|++ .|++++.|+.|++|| .++++..+.+|...|..++|.+
T Consensus 218 ~~~~---------~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 276 (313)
T 3odt_A 218 LRTY---------EGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS 276 (313)
T ss_dssp EEEE---------ECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT
T ss_pred hhhh---------hcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc
Confidence 7653 3799999999999998 499999999999999 5788999999999999998853
No 68
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=269.68 Aligned_cols=270 Identities=11% Similarity=0.165 Sum_probs=221.7
Q ss_pred eEeecccCCEEEEEEcCCCCEE-EEEEC---CCcEEEEeCcCCceeeeeecccccCccccEEEeecCCC---Cceecccc
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYL-ASAGE---DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKH 522 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~L-aTgs~---DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~d---g~~l~~~s 522 (755)
..+.+|.+.|++|+|+|++..| ++|+. |+.|+||++.+++..... ..++...+..+.++|+ +.+++++.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR----EIEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE----EEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee----eecccCcEEEEEEcCCCCCCceEEEec
Confidence 4457899999999999999655 55655 999999999887755443 2356788999999998 68888888
Q ss_pred CCCceeeecccccccccccccCcccccceeeecC-CC-ceEEeccCCCCEEEEEe------cCC-cEEEEEeCCCcEEEE
Q 004404 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DK-PICSFQGHLDDVLDLSW------SKS-QHLLSSSMDKTVRLW 593 (755)
Q Consensus 523 ~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k-~i~~l~gH~~~V~~L~~------spd-~~LaSgs~DgtVrLW 593 (755)
.++.+. +|++. .+ ++..+.+|...|.++.| +|+ .+|++++.|++|++|
T Consensus 88 ~dg~i~-----------------------iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 88 FGGNLH-----------------------IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW 144 (357)
T ss_dssp TTSCEE-----------------------EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred CCCeEE-----------------------EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence 888773 44443 23 67788999999999965 565 689999999999999
Q ss_pred ECCCCc-EEEEee-cC----CceEEEE----EeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEcc---C
Q 004404 594 HLSSKT-CLKIFS-HS----DYVTCIQ----FNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP---D 660 (755)
Q Consensus 594 Dl~t~~-~~~~~~-h~----~~VtsVa----fsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSP---d 660 (755)
|+.+++ .+..+. |. ..|.+++ |+| ++++|++++.|+.|++||+++++......+...|.+++|+| +
T Consensus 145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDIS 223 (357)
T ss_dssp CTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSS
T ss_pred eCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCC
Confidence 999886 666664 33 3899998 678 89999999999999999999999888888889999999999 9
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECC---------
Q 004404 661 GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI--------- 731 (755)
Q Consensus 661 G~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~--------- 731 (755)
+.+|++|+.||.|++||+.+++....+.. ....+|...|++++|+|+++.+|++++.|+.|+|||..
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQHPTKGFAS----VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEEETTTEEEE----EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred CCEEEEECCCCeEEEEeCcCCCcccceee----eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 99999999999999999987665543221 12348999999999999987679999999999999932
Q ss_pred ------------cceEEeecCCccEEEEEEEE
Q 004404 732 ------------DLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 732 ------------~ll~~~~GH~~~V~sv~fs~ 751 (755)
+++..+.+|...|.+++|.+
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 331 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP 331 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcC
Confidence 47889999999999999864
No 69
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2.6e-29 Score=274.26 Aligned_cols=271 Identities=13% Similarity=0.198 Sum_probs=221.8
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc------eeeeeecccccCccccEEEeecCCC----C---
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE------RKGELLEKQEDGHLNMLLLANGSPE----P--- 515 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~------~~~~l~~~~~~~~~~~v~~v~~s~d----g--- 515 (755)
.+.+.+|.++|++|+|+| ++|++|+.||+|+||++.+.+ ....+ .+|...+..+.++++ +
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-----FVHKSGLHHVDVLQAIERDAFEL 81 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-----ECCTTCEEEEEEEEEEETTTEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-----ecCCCcEEEEEEecccccCCccc
Confidence 456789999999999998 799999999999999998877 33333 467788999999999 8
Q ss_pred ceeccccCCCceeeecccccccccccccCcccccceeeecCCCc-----eEEeccC-----CCCEEEEEec----CC-cE
Q 004404 516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP-----ICSFQGH-----LDDVLDLSWS----KS-QH 580 (755)
Q Consensus 516 ~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~-----i~~l~gH-----~~~V~~L~~s----pd-~~ 580 (755)
.+++++..++.+..+... ..+. +..+.+| ...|.+++|+ |+ .+
T Consensus 82 ~~l~s~~~dg~i~iw~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 139 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRIT----------------------REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH 139 (397)
T ss_dssp EEEEEEETTSCEEEEEEE----------------------ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred cEEEEEcCCCCEEEEEcc----------------------CCcccccccceeecccccccCCCcEEEEEEeeccCCCCce
Confidence 899888888877443322 1222 6778888 5899999999 87 67
Q ss_pred -EEEEeCCCcEEEEECCC------CcEEE-----Eee--------cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC
Q 004404 581 -LLSSSMDKTVRLWHLSS------KTCLK-----IFS--------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (755)
Q Consensus 581 -LaSgs~DgtVrLWDl~t------~~~~~-----~~~--------h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~ 640 (755)
|++++.|+.|++||+.+ ++.+. .+. |...|++++|+| ++ +|++++.|+.|++||++++
T Consensus 140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 140 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT
T ss_pred EEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCC
Confidence 99999999999999988 55544 442 789999999999 88 9999999999999999998
Q ss_pred cEEEecc----C---CCCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeeeecccccccc----ccccCCCCCeEEE
Q 004404 641 QVVDWND----L---HEMVTAACYTPDGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQN----KKKRSHQRKITGF 706 (755)
Q Consensus 641 ~~v~~~~----~---~~~VtsvafSPdG~~LasGs~D---G~I~lwDl~~~~~~~~~~i~~~~----~~~~~h~~~Vtsl 706 (755)
+.+..+. | ...|.+++|+|++++|++++.| |.|++||+.+++.+..+...... .....|...|+++
T Consensus 218 ~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 218 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE
T ss_pred ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEE
Confidence 8875544 5 7899999999999999999999 99999999998877654310000 0001189999999
Q ss_pred EEccCCCeEEEEEECCCcEEEEE--CCcceEEee------cC---------------CccEEEEEEEE
Q 004404 707 QFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFK------GE---------------NYVQYMVCIVL 751 (755)
Q Consensus 707 ~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~------GH---------------~~~V~sv~fs~ 751 (755)
+|+|++. +|++++.|+.|+||| .++++..+. +| ...|+.++|.+
T Consensus 298 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 364 (397)
T 1sq9_A 298 SFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 364 (397)
T ss_dssp EECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred EECCCCC-EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence 9999998 899999999999999 578899999 88 89999999975
No 70
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1.5e-28 Score=270.59 Aligned_cols=283 Identities=14% Similarity=0.152 Sum_probs=228.9
Q ss_pred EEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCcc
Q 004404 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~ 503 (755)
++++..++.|++|+..+.+.... +..| ..+....|+|++++||+|+.||.|+|||+.+++....+ .+|.
T Consensus 71 l~~~~~d~~v~i~d~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~h~ 139 (420)
T 3vl1_A 71 LYKARLDGHDFLFNTIIRDGSKM-----LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-----QAHV 139 (420)
T ss_dssp EEEEEETTEEEEEECCSEETTTT-----SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-----TSSS
T ss_pred EEEEEcCCcEEEEEecccceeeE-----EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-----cccc
Confidence 57778899999999886655432 3345 44555578999999999999999999999877655443 5788
Q ss_pred ccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEE
Q 004404 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHL 581 (755)
Q Consensus 504 ~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~L 581 (755)
..+..+.++|++.+++++..++.+ .+|++ .++.+..+.+|...|++++|+|+ .+|
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i-----------------------~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 196 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQL-----------------------KIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEE-----------------------EEEETTTCCCCEEEECCSSCEEEEEEETTTTEE
T ss_pred CccEEEEECCCCCEEEEEeCCCeE-----------------------EEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEE
Confidence 899999999999999999888877 34444 35667888999999999999998 789
Q ss_pred EEEeCCCcEEEEECCCCcEEEEee----cCCceEEEEE---------------------eeCCCcEEEEEECCCcEEEEE
Q 004404 582 LSSSMDKTVRLWHLSSKTCLKIFS----HSDYVTCIQF---------------------NPVDDRYFISGSLDAKVRIWS 636 (755)
Q Consensus 582 aSgs~DgtVrLWDl~t~~~~~~~~----h~~~VtsVaf---------------------sP~dg~~LaSgS~DgtVrIWD 636 (755)
++++.|++|++||+.+++++..+. +...|.+++| +| ++++|++++.||.|++||
T Consensus 197 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d 275 (420)
T 3vl1_A 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHN 275 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEE
T ss_pred EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEE
Confidence 999999999999999999998885 4555666555 67 788999999999999999
Q ss_pred CCCCcEEEec--cCCCCEEEEEEccCCC-EEEEEECCCcEEEEECCCCee-eeccccccccccccCCCCCeEEEEEccCC
Q 004404 637 IPERQVVDWN--DLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 637 l~t~~~v~~~--~~~~~VtsvafSPdG~-~LasGs~DG~I~lwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
+++++.+... .+...|++++|+|+++ +|++|+.||.|++||+.+++. +..+. ..|...|+.+.|. ++
T Consensus 276 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--------~~~~~~v~~~~~~-~~ 346 (420)
T 3vl1_A 276 VFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL--------INEGTPINNVYFA-AG 346 (420)
T ss_dssp TTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE--------ESTTSCEEEEEEE-TT
T ss_pred CCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh--------ccCCCCceEEEeC-CC
Confidence 9998866433 3567899999999998 999999999999999998754 32221 1367788888655 55
Q ss_pred CeEEEEEECCCcEEEEECC-----------cceEEeecCCccEEEEEEEE
Q 004404 713 SSEVLVTSADSRIRVVDGI-----------DLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 713 ~~~L~sgs~Dg~IrVWD~~-----------~ll~~~~GH~~~V~sv~fs~ 751 (755)
. +|++++.|++|+|||.. .....+.+|...+..++|.|
T Consensus 347 ~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 395 (420)
T 3vl1_A 347 A-LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS 395 (420)
T ss_dssp E-EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC
T ss_pred C-EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEcc
Confidence 5 89999999999999921 33446778888899988865
No 71
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=6.8e-30 Score=273.55 Aligned_cols=244 Identities=15% Similarity=0.219 Sum_probs=193.1
Q ss_pred EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCce--eeeeecccccCccccEEEeecCC--CCceeccccCCCc
Q 004404 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER--KGELLEKQEDGHLNMLLLANGSP--EPTSLSPKHLDNH 526 (755)
Q Consensus 451 ~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~--~~~l~~~~~~~~~~~v~~v~~s~--dg~~l~~~s~d~~ 526 (755)
.+.+|.+.|++++|+|+|++||||+.|++|+|||+.+++. ... ..+|...+..+.|++ ++.++++++.++.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~-----l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~ 82 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD-----LRGHEGPVWQVAWAHPMYGNILASCSYDRK 82 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEE-----EECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEE-----EcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence 3579999999999999999999999999999999987643 222 257888999999986 3888999988888
Q ss_pred eeeecccccccccccccCcccccceeeecCC---CceEEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCCCcE
Q 004404 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTC 600 (755)
Q Consensus 527 i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~---k~i~~l~gH~~~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~~~ 600 (755)
+.+ |++.. +.+..+.+|...|++++|+|+ .+|++++.|++|++||+..+..
T Consensus 83 v~i-----------------------Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~ 139 (316)
T 3bg1_A 83 VII-----------------------WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139 (316)
T ss_dssp EEE-----------------------ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred EEE-----------------------EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence 744 43322 356678899999999999996 4799999999999999987632
Q ss_pred E---EEe-ecCCceEEEEEeeCC-----------------CcEEEEEECCCcEEEEECCCC---cEE-EeccCCCCEEEE
Q 004404 601 L---KIF-SHSDYVTCIQFNPVD-----------------DRYFISGSLDAKVRIWSIPER---QVV-DWNDLHEMVTAA 655 (755)
Q Consensus 601 ~---~~~-~h~~~VtsVafsP~d-----------------g~~LaSgS~DgtVrIWDl~t~---~~v-~~~~~~~~Vtsv 655 (755)
. ..+ .|...|.+++|+| + +.+|++|+.|++|+|||++.. +++ .+..|...|.++
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v 218 (316)
T 3bg1_A 140 WEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDV 218 (316)
T ss_dssp EEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEE
T ss_pred cceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEE
Confidence 2 223 3889999999999 5 468999999999999999754 233 345677899999
Q ss_pred EEccCC----CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 656 CYTPDG----QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 656 afSPdG----~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+|+|++ ++|++|+.||+|+||++.+....... ...+..|...|.+++|+|++. +|++++.|++|+||+
T Consensus 219 ~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~-----~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 219 AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS-----PKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWK 290 (316)
T ss_dssp ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCB-----CCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEE
T ss_pred EecCCCCCCCceEEEEcCCCeEEEEEccCccccchh-----hhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEE
Confidence 999986 89999999999999999863211000 011236788999999999998 899999999999999
No 72
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=4.5e-29 Score=272.39 Aligned_cols=270 Identities=16% Similarity=0.146 Sum_probs=217.2
Q ss_pred eeeEeecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCC-CCceeccccCCC
Q 004404 448 KCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDN 525 (755)
Q Consensus 448 ~~q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~-dg~~l~~~s~d~ 525 (755)
..+.+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....+. ..+|...+..+.|+| ++..++++..++
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ---GMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC---CCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee---cCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 345678999999999999999 999999999999999998877665542 246788999999999 678888888888
Q ss_pred ceeeecccccccccccccCcccccceeeecCCCceEEeccC---CCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEE
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH---LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL 601 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH---~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~ 601 (755)
.+ .+|++.++.+..+..| ...|.+++|+|+ .+|++++.|+.|++||+ +++++
T Consensus 142 ~i-----------------------~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~ 197 (383)
T 3ei3_B 142 AT-----------------------TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI 197 (383)
T ss_dssp EE-----------------------EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred EE-----------------------EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence 77 4566655666666544 488999999998 88999999999999999 46677
Q ss_pred EEee-cCCceEEEEEeeCCCc-EEEEEECCCcEEEEECCC----CcEEEeccCCCCEEEEEEcc-CCCEEEEEECCCcEE
Q 004404 602 KIFS-HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPE----RQVVDWNDLHEMVTAACYTP-DGQGALVGSYKGSCH 674 (755)
Q Consensus 602 ~~~~-h~~~VtsVafsP~dg~-~LaSgS~DgtVrIWDl~t----~~~v~~~~~~~~VtsvafSP-dG~~LasGs~DG~I~ 674 (755)
..+. |...|.+++|+| ++. +|++++.|++|++||+++ +.++....+...|++++|+| ++++|++++.|+.|+
T Consensus 198 ~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 198 FKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp EEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred EEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence 7775 999999999999 777 999999999999999988 66777778889999999999 999999999999999
Q ss_pred EEECCCCeeeeccccccccccccCCC----------CCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecC--
Q 004404 675 LYNTSENKLQQKSPINLQNKKKRSHQ----------RKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGE-- 740 (755)
Q Consensus 675 lwDl~~~~~~~~~~i~~~~~~~~~h~----------~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH-- 740 (755)
+||+.+++....+.... .....|. ..+..++|+|++. + +++.|+.|+||| .++++..+.+|
T Consensus 277 iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 277 VYSSYDWSKPDQIIIHP--HRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEETTBTTSCSEEEECC--BCCCTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred EEECCCCcccccccccc--ccccccccceEEeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 99999887654432110 1111222 3444566666665 2 677999999999 57889999985
Q ss_pred CccEEEEEEE
Q 004404 741 NYVQYMVCIV 750 (755)
Q Consensus 741 ~~~V~sv~fs 750 (755)
...+..++|.
T Consensus 352 ~~~~~~~~~s 361 (383)
T 3ei3_B 352 AGIISLNKFS 361 (383)
T ss_dssp CSCCCEEEEC
T ss_pred CceEEEEEEe
Confidence 4456666765
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.9e-28 Score=258.87 Aligned_cols=264 Identities=15% Similarity=0.246 Sum_probs=224.8
Q ss_pred eeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCc
Q 004404 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (755)
Q Consensus 447 ~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~ 526 (755)
.+...+.+|.+.|++|+|+|++++|++++.||.|+|||+.+++....+ .+|...+..+.+++++..++++..++.
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-----DGHTGTIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-----hhcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 344568899999999999999999999999999999999988877765 567888999999999999999888887
Q ss_pred eeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCC-----CcEEEEECCCCc
Q 004404 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD-----KTVRLWHLSSKT 599 (755)
Q Consensus 527 i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~D-----gtVrLWDl~t~~ 599 (755)
+ .+|++ +++.+..+. |...|.+++|+|+ .+|++++.+ +.|++||+....
T Consensus 98 i-----------------------~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 98 I-----------------------KLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp E-----------------------EEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred E-----------------------EEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 7 44544 344555555 8889999999998 789999998 999999987653
Q ss_pred -----------EEEEe-ecCC--ceEEEEEeeCCCcEEEEEECCCcEEEEECCC-CcEE-EeccCCCCEEEEEEccCCCE
Q 004404 600 -----------CLKIF-SHSD--YVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVV-DWNDLHEMVTAACYTPDGQG 663 (755)
Q Consensus 600 -----------~~~~~-~h~~--~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-~~~v-~~~~~~~~VtsvafSPdG~~ 663 (755)
.+..+ .|.. .+.+++|+| ++++|++++.||.|++||+.+ .+.+ .+..+...|.+++|+|++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 154 ATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp TTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred cceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCE
Confidence 22222 2555 999999999 999999999999999999998 5555 44557789999999999999
Q ss_pred EEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC--------------cEEEEE
Q 004404 664 ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS--------------RIRVVD 729 (755)
Q Consensus 664 LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg--------------~IrVWD 729 (755)
|++++.||.|++||+.+++....+ .+...+..++|+|++. ++++++.++ .|++||
T Consensus 233 l~~~~~d~~i~v~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVSTLQVLKKY----------ETDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEE----------ECSSCEEEEEECSSSS-EEEEEECCC-------------CEEEEEE
T ss_pred EEEecCCceEEEEECCCCceeeee----------cCCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 999999999999999998877653 3678899999999998 888888888 899999
Q ss_pred --CCcceEEeecCCccEEEEEEEE
Q 004404 730 --GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 730 --~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
.++.+..+.+|...|.+++|.+
T Consensus 302 ~~~~~~~~~~~~~~~~v~~~~~s~ 325 (369)
T 3zwl_B 302 KIFEEEIGRVQGHFGPLNTVAISP 325 (369)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECT
T ss_pred cCCCcchhheecccCcEEEEEECC
Confidence 5788999999999999999864
No 74
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.3e-28 Score=260.33 Aligned_cols=263 Identities=12% Similarity=0.184 Sum_probs=204.3
Q ss_pred EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCC--CCceeccccCCCcee
Q 004404 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP--EPTSLSPKHLDNHLE 528 (755)
Q Consensus 451 ~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~--dg~~l~~~s~d~~i~ 528 (755)
.+.+|.+.|++|+|+|++++||+|+.||.|+||++.++....++. ....+|...+..+.|++ ++.+++++..++.+.
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELS-DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEE-EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceec-ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 467999999999999999999999999999999998765332221 11256788999999999 589999998888875
Q ss_pred eecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCCCcEEEEe-
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIF- 604 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~~~~~~~- 604 (755)
++.......... ....+++..+.+|...|.+++|+|+ .+|++++.|++|++||+.+++.+..+
T Consensus 85 vwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 85 LWEEDPDQEECS-------------GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEECTTSCTTS-------------SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEecCCCccccc-------------ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence 444322110000 0001457788899999999999996 57999999999999999877543322
Q ss_pred -------------ecCCceEEEEEeeCC---CcEEEEEECCCcEEEEECCCCcE--E-EeccCCCCEEEEEEccCC----
Q 004404 605 -------------SHSDYVTCIQFNPVD---DRYFISGSLDAKVRIWSIPERQV--V-DWNDLHEMVTAACYTPDG---- 661 (755)
Q Consensus 605 -------------~h~~~VtsVafsP~d---g~~LaSgS~DgtVrIWDl~t~~~--v-~~~~~~~~VtsvafSPdG---- 661 (755)
.|...+.+++|+| + +.+|++++.|+.+.+|+...++. + .+..|...|++++|+|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCP-SRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECC-CSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred ccccccccccccCCcccceeEEEecc-CCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 3778899999999 6 89999999999999998888764 2 444677899999999998
Q ss_pred CEEEEEECCCcEEEEECCCCeeeecccc-------------------------------------ccccccccCCCCCeE
Q 004404 662 QGALVGSYKGSCHLYNTSENKLQQKSPI-------------------------------------NLQNKKKRSHQRKIT 704 (755)
Q Consensus 662 ~~LasGs~DG~I~lwDl~~~~~~~~~~i-------------------------------------~~~~~~~~~h~~~Vt 704 (755)
++|++|+.||.|++||+..+........ ......+.+|...|+
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 310 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW 310 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE
T ss_pred eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE
Confidence 8999999999999999987532111000 001123458999999
Q ss_pred EEEEccCCCeEEEEEECCCcEEEEE
Q 004404 705 GFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 705 sl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+++|+|+++ +|++++.|+.|+|||
T Consensus 311 ~~~~s~~~~-~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 311 SVSWNLTGT-ILSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEECSSSC-CEEEEETTSCEEEEE
T ss_pred EEEEcCCCC-EEEEecCCCcEEEEe
Confidence 999999998 899999999999999
No 75
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=4.2e-29 Score=266.55 Aligned_cols=268 Identities=13% Similarity=0.117 Sum_probs=218.8
Q ss_pred eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCc-eeccccCCCceeee
Q 004404 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKK 530 (755)
Q Consensus 452 l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~-~l~~~s~d~~i~~~ 530 (755)
..+|.+.|++++|+|++++|++++.|+.|+||++.+++....+.. ...+...+..+.+++++. .++++..++.+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i--- 81 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ--SLRYKHPLLCCNFIDNTDLQIYVGTVQGEI--- 81 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEE--EEECSSCEEEEEEEESSSEEEEEEETTSCE---
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccccee--eeecCCceEEEEECCCCCcEEEEEcCCCeE---
Confidence 458999999999999999999999999999999987762211111 235677899999999999 88888888777
Q ss_pred cccccccccccccCcccccceeeec-CCCceEEecc--CCCCEEEEEecCCcEEEEEeCCCcEEEEECCC---------C
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG--HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS---------K 598 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~g--H~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t---------~ 598 (755)
.+|++ .......+.+ |...|.+++|+|.++|++++.|+.|++||+.+ +
T Consensus 82 --------------------~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 82 --------------------LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp --------------------EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred --------------------EEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccC
Confidence 45665 5556677888 99999999999988899999999999999987 7
Q ss_pred cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-CcE---EEeccCCCCEEEEEEcc-CCCEEEEEECCCcE
Q 004404 599 TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQV---VDWNDLHEMVTAACYTP-DGQGALVGSYKGSC 673 (755)
Q Consensus 599 ~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-~~~---v~~~~~~~~VtsvafSP-dG~~LasGs~DG~I 673 (755)
+++..+.|...|.+++|+| ++ |++++.|+.|++||+++ +.. .....+...+.+++|+| ++++|++++.||.|
T Consensus 142 ~~~~~~~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 218 (342)
T 1yfq_A 142 LNSNNTKVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218 (342)
T ss_dssp SCSSSSSSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred CeeeEEeeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcE
Confidence 7777777999999999998 54 99999999999999988 442 24456778999999999 99999999999999
Q ss_pred EEEECCCC------eeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecC-CccE
Q 004404 674 HLYNTSEN------KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGE-NYVQ 744 (755)
Q Consensus 674 ~lwDl~~~------~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH-~~~V 744 (755)
++|++... +....+...........|...|++++|+|++. +|++++.|+.|+||| .++++..+.+| ...|
T Consensus 219 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v 297 (342)
T 1yfq_A 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV 297 (342)
T ss_dssp EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCccHhHhhhhhcccCCCc
Confidence 99999876 33332211000000113455999999999998 799999999999999 47889999999 8888
Q ss_pred EEEE
Q 004404 745 YMVC 748 (755)
Q Consensus 745 ~sv~ 748 (755)
.+++
T Consensus 298 ~~~~ 301 (342)
T 1yfq_A 298 VKIA 301 (342)
T ss_dssp EEEE
T ss_pred eEec
Confidence 8877
No 76
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-29 Score=278.74 Aligned_cols=277 Identities=13% Similarity=0.104 Sum_probs=209.5
Q ss_pred eeEe-ecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCc
Q 004404 449 CQEI-QAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (755)
Q Consensus 449 ~q~l-~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~ 526 (755)
++.+ .+|.+.|++|+|+| ++++||||+.||+|+|||+.+.+....+.......|...+..+.+++++..++++..++.
T Consensus 55 ~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~ 134 (437)
T 3gre_A 55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQ 134 (437)
T ss_dssp EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence 3456 78999999999999 999999999999999999976221111100112246788999999999999999999998
Q ss_pred eeeecccccccccccccCcccccceeeecCCCceEEec--c--CCCCEEEEE--ecCC-cEEEEEeCCCcEEEEECCCCc
Q 004404 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--G--HLDDVLDLS--WSKS-QHLLSSSMDKTVRLWHLSSKT 599 (755)
Q Consensus 527 i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~--g--H~~~V~~L~--~spd-~~LaSgs~DgtVrLWDl~t~~ 599 (755)
+.++......... .+.......+..+. . +...+.++. ++++ .+|++++.|++|++||+.+++
T Consensus 135 i~vwd~~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 203 (437)
T 3gre_A 135 IIVLKVNHYQQES-----------EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE 203 (437)
T ss_dssp EEEEEEEEEEETT-----------EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEeccccCCc-----------eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence 8666543110000 00000111222222 2 566788877 4566 789999999999999999999
Q ss_pred EEEEee---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec--cCCCCEEEEEEcc----CCCEEEEEECC
Q 004404 600 CLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYTP----DGQGALVGSYK 670 (755)
Q Consensus 600 ~~~~~~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~--~~~~~VtsvafSP----dG~~LasGs~D 670 (755)
++..+. |...|++++|+| ++++|++|+.||+|++||+++++++... .+...|++++|+| ++++|++|+.|
T Consensus 204 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d 282 (437)
T 3gre_A 204 RLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK 282 (437)
T ss_dssp EEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT
T ss_pred eeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC
Confidence 998885 789999999999 8999999999999999999999887644 6677899996654 68899999999
Q ss_pred CcEEEEECCCCeeeecccccc--------c-------cccccC--CCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CC
Q 004404 671 GSCHLYNTSENKLQQKSPINL--------Q-------NKKKRS--HQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GI 731 (755)
Q Consensus 671 G~I~lwDl~~~~~~~~~~i~~--------~-------~~~~~~--h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~ 731 (755)
|.|++||+.+++....+.... . ...+.+ |...|++++|+ ++. +|++++.|+.|++|| .+
T Consensus 283 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 283 TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTCG
T ss_pred CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCCc
Confidence 999999999988765543110 0 001223 88889999999 554 899999999999999 46
Q ss_pred cceEEeec
Q 004404 732 DLVHKFKG 739 (755)
Q Consensus 732 ~ll~~~~G 739 (755)
+++..+.+
T Consensus 361 ~~~~~~~~ 368 (437)
T 3gre_A 361 SSSKAVIS 368 (437)
T ss_dssp GGCEEEEC
T ss_pred ccceEEec
Confidence 77777776
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=3.6e-29 Score=299.69 Aligned_cols=332 Identities=17% Similarity=0.231 Sum_probs=262.1
Q ss_pred HHhcCCcHHHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCC
Q 004404 333 EMCVGHSPIVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (755)
Q Consensus 333 ~~~~GHs~~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g 409 (755)
..|.||+..|..++++|+ +++++.|++|+ +|+..+|....++. +|...|..+++++++
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~-iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~----------------- 67 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVE-IWNYETQVEVRSIQ-VTETPVRAGKFIARK----------------- 67 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCSSCEEEEEEEGGG-----------------
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEE-EEECCCCceEEEEe-cCCCcEEEEEEeCCC-----------------
Confidence 456899999999999998 88999999999 99998887766666 677777777777653
Q ss_pred CceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc
Q 004404 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (755)
Q Consensus 410 ~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~ 489 (755)
..+++++.++.|++|+..+++. .+.+.+|.+.|++++|+|++++|++++.||+|++|++.++.
T Consensus 68 ------------~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 130 (814)
T 3mkq_A 68 ------------NWIIVGSDDFRIRVFNYNTGEK-----VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130 (814)
T ss_dssp ------------TEEEEEETTSEEEEEETTTCCE-----EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS
T ss_pred ------------CEEEEEeCCCeEEEEECCCCcE-----EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc
Confidence 3467778899999999986653 45567899999999999999999999999999999998764
Q ss_pred eeeeeecccccCccccEEEeecCC-CCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccC-
Q 004404 490 RKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGH- 566 (755)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~s~-dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH- 566 (755)
..... ..+|...+..+.|+| ++..++++..++.+. +|++ ..++...+..|
T Consensus 131 ~~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~-----------------------vwd~~~~~~~~~~~~~~ 183 (814)
T 3mkq_A 131 ALEQT----FEGHEHFVMCVAFNPKDPSTFASGCLDRTVK-----------------------VWSLGQSTPNFTLTTGQ 183 (814)
T ss_dssp EEEEE----EECCSSCEEEEEEETTEEEEEEEEETTSEEE-----------------------EEETTCSSCSEEEECCC
T ss_pred eEEEE----EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE-----------------------EEECCCCcceeEEecCC
Confidence 33322 256778899999999 788898888888774 3333 23344455444
Q ss_pred CCCEEEEEecC--C-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE
Q 004404 567 LDDVLDLSWSK--S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (755)
Q Consensus 567 ~~~V~~L~~sp--d-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~ 642 (755)
...|.+++|+| + .+|++++.|++|++||+.+++++..+. |...|.+++|+| ++.+|++++.||+|++||+.+++.
T Consensus 184 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSE
T ss_pred CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 48899999998 6 689999999999999999999998887 999999999999 999999999999999999999887
Q ss_pred EEe-ccCCCCEEEEEEccCCC--EEEEEECCCcEEEEECCCCeeeeccc-------------------------------
Q 004404 643 VDW-NDLHEMVTAACYTPDGQ--GALVGSYKGSCHLYNTSENKLQQKSP------------------------------- 688 (755)
Q Consensus 643 v~~-~~~~~~VtsvafSPdG~--~LasGs~DG~I~lwDl~~~~~~~~~~------------------------------- 688 (755)
+.. ..+...+.+++|+|++. +++++ .++.+.+|++........+.
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ 341 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccccc
Confidence 744 45567999999999987 35555 47778899876543221110
Q ss_pred ---cccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECC
Q 004404 689 ---INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (755)
Q Consensus 689 ---i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~ 731 (755)
..........+...+.+++|+|+|. +|++++ |+.+.||+..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~spdg~-~la~~~-~~~~~i~~~~ 385 (814)
T 3mkq_A 342 DEPLSLQTKELGSVDVFPQSLAHSPNGR-FVTVVG-DGEYVIYTAL 385 (814)
T ss_dssp SSCBCCCCEEECCCSSCCSEEEECTTSS-EEEEEE-TTEEEEEETT
T ss_pred CccceeeeecCCCCccCCceeEECCCCC-EEEEec-CCEEEEEECc
Confidence 0000111234566789999999998 777777 8999999943
No 78
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.1e-28 Score=266.51 Aligned_cols=309 Identities=17% Similarity=0.219 Sum_probs=230.2
Q ss_pred CCccccccCCCCCCccccccCCcccccceeEEee-ccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEE
Q 004404 357 DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQ 435 (755)
Q Consensus 357 D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~-~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vri 435 (755)
|.+++ +|+...+.....++ +|...|..+++++ + ...+++++.++.|++
T Consensus 22 ~~~~~-v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~-----------------------------~~~l~~~~~dg~i~i 70 (408)
T 4a11_B 22 ESTRR-VLGLELNKDRDVER-IHGGGINTLDIEPVE-----------------------------GRYMLSGGSDGVIVL 70 (408)
T ss_dssp HHHHH-HHTEEECTTEEECC-CCSSCEEEEEECTTT-----------------------------CCEEEEEETTSCEEE
T ss_pred cCcce-eeccccCcceeeee-ccCCcEEEEEEecCC-----------------------------CCEEEEEcCCCeEEE
Confidence 34556 78776666555554 5777777776665 3 245788889999999
Q ss_pred eeCCCCcccceeeeeEe--------ecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccE
Q 004404 436 YGKSCKDLTALYKCQEI--------QAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506 (755)
Q Consensus 436 wd~~~~~~~~~~~~q~l--------~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v 506 (755)
|+...++....+..... .+|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+
T Consensus 71 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~~ 144 (408)
T 4a11_B 71 YDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN------FEETV 144 (408)
T ss_dssp EECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE------CSSCE
T ss_pred EECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc------CCCce
Confidence 99988776554432211 36999999999999 77899999999999999999887666552 23344
Q ss_pred EEeecCC---CCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCCc--E
Q 004404 507 LLANGSP---EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQ--H 580 (755)
Q Consensus 507 ~~v~~s~---dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd~--~ 580 (755)
..+.+.+ ++.+++++..++.+. +|++ .++.+..+.+|...|++++|+|++ .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~-----------------------~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 201 (408)
T 4a11_B 145 YSHHMSPVSTKHCLVAVGTRGPKVQ-----------------------LCDLKSGSCSHILQGHRQEILAVSWSPRYDYI 201 (408)
T ss_dssp EEEEECSSCSSCCEEEEEESSSSEE-----------------------EEESSSSCCCEEECCCCSCEEEEEECSSCTTE
T ss_pred eeeEeecCCCCCcEEEEEcCCCeEE-----------------------EEeCCCcceeeeecCCCCcEEEEEECCCCCcE
Confidence 5555555 455888877777663 4443 345677888999999999999983 6
Q ss_pred EEEEeCCCcEEEEECCCCc-EEEEe----------------ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE
Q 004404 581 LLSSSMDKTVRLWHLSSKT-CLKIF----------------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~-~~~~~----------------~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v 643 (755)
|++++.|+.|++||++++. ++..+ .|...|++++|+| ++++|++++.|+.|++||+.+++..
T Consensus 202 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 202 LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENT 280 (408)
T ss_dssp EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBC
T ss_pred EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCccc
Confidence 8999999999999998764 44443 3888999999999 9999999999999999999987754
Q ss_pred EeccCC------CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEE
Q 004404 644 DWNDLH------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (755)
Q Consensus 644 ~~~~~~------~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~ 717 (755)
...... ..+........+..+++++.++.|++||+.+++.+..+ .+|...|++++|+|++. +|+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---------~~~~~~v~~~~~s~~~~-~l~ 350 (408)
T 4a11_B 281 LVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML---------KGHYKTVDCCVFQSNFQ-ELY 350 (408)
T ss_dssp CCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE---------CCCSSCEEEEEEETTTT-EEE
T ss_pred eeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee---------ccCCCeEEEEEEcCCCC-EEE
Confidence 322111 12222222334556777778999999999998887653 38999999999999998 899
Q ss_pred EEECCCcEEEEE--CCcceEE
Q 004404 718 VTSADSRIRVVD--GIDLVHK 736 (755)
Q Consensus 718 sgs~Dg~IrVWD--~~~ll~~ 736 (755)
+++.|+.|+||| ..+.+..
T Consensus 351 s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 351 SGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EEETTSCEEEEEECC------
T ss_pred EECCCCeEEEEeCCCCCccCC
Confidence 999999999999 3444443
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.2e-28 Score=271.69 Aligned_cols=267 Identities=15% Similarity=0.221 Sum_probs=211.1
Q ss_pred eeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceee
Q 004404 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKG 492 (755)
Q Consensus 414 vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~ 492 (755)
+.+..+...+++++..++.|++|+....... ......+.+|.+.|++++|+| ++++|++|+.||+|+||++.+++...
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRV-DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEEC-CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCC-CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 3333444445567899999999998543211 122345779999999999999 99999999999999999986653211
Q ss_pred eeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEE
Q 004404 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572 (755)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~ 572 (755)
. ..+++..+.+|...|++
T Consensus 119 ~--------------------------------------------------------------~~~~~~~~~~h~~~v~~ 136 (402)
T 2aq5_A 119 P--------------------------------------------------------------LREPVITLEGHTKRVGI 136 (402)
T ss_dssp C--------------------------------------------------------------BCSCSEEEECCSSCEEE
T ss_pred c--------------------------------------------------------------cCCceEEecCCCCeEEE
Confidence 1 11345677899999999
Q ss_pred EEecCC--cEEEEEeCCCcEEEEECCCCcEEEEe--e-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec-
Q 004404 573 LSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF--S-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN- 646 (755)
Q Consensus 573 L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~--~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~- 646 (755)
++|+|+ ..|++++.|++|++||+.+++++..+ . |...|++++|+| ++++|++++.|++|++||+++++.+...
T Consensus 137 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 215 (402)
T 2aq5_A 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKD 215 (402)
T ss_dssp EEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeec
Confidence 999998 48999999999999999999999988 4 999999999999 9999999999999999999999887554
Q ss_pred -cCCCC-EEEEEEccCCCEEEEE---ECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 647 -DLHEM-VTAACYTPDGQGALVG---SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 647 -~~~~~-VtsvafSPdG~~LasG---s~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
.+... +..++|+|++++|++| +.|+.|++||+.++....... ...|...|..++|+|++..++++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 216 RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-------ELDTSSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-------ECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-------eccCCCceeEEEEcCCCCEEEEEEcC
Confidence 45444 8999999999999999 789999999999866422110 12577889999999999843345567
Q ss_pred CCcEEEEE--CCc-ceEEeecCC--ccEEEEEEEE
Q 004404 722 DSRIRVVD--GID-LVHKFKGEN--YVQYMVCIVL 751 (755)
Q Consensus 722 Dg~IrVWD--~~~-ll~~~~GH~--~~V~sv~fs~ 751 (755)
|+.|++|| .++ ++..+..|. ..|.+++|.|
T Consensus 289 dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp 323 (402)
T 2aq5_A 289 DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP 323 (402)
T ss_dssp CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC
T ss_pred CCeEEEEEecCCCcceEeecccccCCcccceEEec
Confidence 99999999 344 366666654 7788888864
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=3.6e-28 Score=288.00 Aligned_cols=255 Identities=22% Similarity=0.417 Sum_probs=210.4
Q ss_pred eEeecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 450 QEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
..+++|.+.|++|+|+|++ .+|+||+.|++|+||++.+.............+|...+..+.+++++.++++++.++.+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v- 454 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL- 454 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE-
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE-
Confidence 4578999999999999864 79999999999999999765433222222246788999999999999999999988887
Q ss_pred eecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEe--
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF-- 604 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~-- 604 (755)
.+|++ +++.+..+.+|...|++++|+|+ .+|++++.|++|+|||+.........
T Consensus 455 ----------------------~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 512 (694)
T 3dm0_A 455 ----------------------RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG 512 (694)
T ss_dssp ----------------------EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred ----------------------EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence 45554 34567788999999999999998 78999999999999998765444433
Q ss_pred --ecCCceEEEEEeeCCC--cEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 605 --SHSDYVTCIQFNPVDD--RYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 605 --~h~~~VtsVafsP~dg--~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
.|...|.+++|+| ++ .+|++++.|++|+|||++++++.. +..|...|++++|+|+|++|++|+.||.|++||+.
T Consensus 513 ~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 513 GEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp TTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred CCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 2888999999999 65 689999999999999999988774 45677899999999999999999999999999999
Q ss_pred CCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecC
Q 004404 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGE 740 (755)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH 740 (755)
+++.+..+ .+...|.+++|+|++. +++++.|+.|+||| .+.++..++.|
T Consensus 592 ~~~~~~~~----------~~~~~v~~~~~sp~~~--~l~~~~~~~i~iwd~~~~~~~~~~~~~ 642 (694)
T 3dm0_A 592 EGKKLYSL----------EANSVIHALCFSPNRY--WLCAATEHGIKIWDLESKSIVEDLKVD 642 (694)
T ss_dssp TTEEEECC----------BCSSCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEEECCC
T ss_pred CCceEEEe----------cCCCcEEEEEEcCCCc--EEEEEcCCCEEEEECCCCCChhhhccc
Confidence 99877643 2456799999999985 45555677899999 46677777644
No 81
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-28 Score=262.16 Aligned_cols=247 Identities=17% Similarity=0.264 Sum_probs=203.3
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcC--CceeeeeecccccCccccEEEeecCCC--CceeccccCCC
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE--SERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDN 525 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t--~~~~~~l~~~~~~~~~~~v~~v~~s~d--g~~l~~~s~d~ 525 (755)
+.+.+|.+.|++++|+|++++||+|+.||.|+||++.. .+....+ .+|...+..+.|+++ +.+++++..++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-----TGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-----cCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 45789999999999999999999999999999999973 3333333 567889999999977 89999998888
Q ss_pred ceeeecccccccccccccCcccccceeeecCCC---ceEEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCCCc
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDK---PICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT 599 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k---~i~~l~gH~~~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~~ 599 (755)
.+. +|++... .+..+.+|...|.+++|+|+ .+|++++.|+.|++||+..+.
T Consensus 80 ~v~-----------------------iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 80 KVL-----------------------IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp CEE-----------------------EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred EEE-----------------------EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 774 4443322 56778889999999999997 589999999999999998873
Q ss_pred E--EEEe-ecCCceEEEEEeeC------------CCcEEEEEECCCcEEEEECCCCc----EE-EeccCCCCEEEEEEcc
Q 004404 600 C--LKIF-SHSDYVTCIQFNPV------------DDRYFISGSLDAKVRIWSIPERQ----VV-DWNDLHEMVTAACYTP 659 (755)
Q Consensus 600 ~--~~~~-~h~~~VtsVafsP~------------dg~~LaSgS~DgtVrIWDl~t~~----~v-~~~~~~~~VtsvafSP 659 (755)
. ...+ .|...|++++|+|. ++.+|++++.|+.|++||++++. +. .+..|...|.+++|+|
T Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 137 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216 (379)
T ss_dssp CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC
Confidence 2 2233 49999999999994 48999999999999999998754 22 4456778999999999
Q ss_pred C---CCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 660 D---GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 660 d---G~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+ +++|++++.||.|++||+..+.......+ .....|...|++++|+|++. +|++++.|+.|+|||
T Consensus 217 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL----LKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWK 284 (379)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE----SSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEE
T ss_pred CCCCCCeEEEEeCCCEEEEEeCCCCCccceeee----eccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEe
Confidence 9 89999999999999999998742211110 12236889999999999998 899999999999999
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=4.1e-28 Score=261.58 Aligned_cols=239 Identities=15% Similarity=0.162 Sum_probs=200.1
Q ss_pred eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc--eeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 452 l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~--~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
+..|.++|++++|+|++++||+++.|+.|+||++.+++ ....+ .+|...+..+.++|++.+++++..++.+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~~~~~dg~i~- 77 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-----KEHNGQVTGVDWAPDSNRIVTCGTDRNAY- 77 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-----ECCSSCEEEEEEETTTTEEEEEETTSCEE-
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-----cCCCCcccEEEEeCCCCEEEEEcCCCeEE-
Confidence 45699999999999999999999999999999998876 44444 46778899999999999999988887774
Q ss_pred ecccccccccccccCcccccceeeecCCC---ceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcE---EE
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFALSDK---PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC---LK 602 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~s~k---~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~---~~ 602 (755)
+|++... ....+..|...|.+++|+|+ .+|++++.|+.|++||+..+.. ..
T Consensus 78 ----------------------vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 135 (372)
T 1k8k_C 78 ----------------------VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135 (372)
T ss_dssp ----------------------EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred ----------------------EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence 3333222 23445779999999999998 7899999999999999988762 33
Q ss_pred Ee--ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECC------------------CCcEEEec-cCCCCEEEEEEccCC
Q 004404 603 IF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP------------------ERQVVDWN-DLHEMVTAACYTPDG 661 (755)
Q Consensus 603 ~~--~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~------------------t~~~v~~~-~~~~~VtsvafSPdG 661 (755)
.+ .|...|++++|+| ++++|++++.|+.|++||+. .++++..+ .+...|.+++|+|++
T Consensus 136 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 214 (372)
T 1k8k_C 136 HIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 214 (372)
T ss_dssp EECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred eeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC
Confidence 33 2889999999999 99999999999999999953 55666444 677899999999999
Q ss_pred CEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 662 QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 662 ~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
++|++++.||.|++||+.+++.+..+ ..|...|++++|+|++. +|+++ .|+.|++||.
T Consensus 215 ~~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 215 SRVAWVSHDSTVCLADADKKMAVATL---------ASETLPLLAVTFITESS-LVAAG-HDCFPVLFTY 272 (372)
T ss_dssp SEEEEEETTTEEEEEEGGGTTEEEEE---------ECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCceeEEE---------ccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEc
Confidence 99999999999999999988876653 37888999999999985 55554 9999999993
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=3.2e-28 Score=291.44 Aligned_cols=265 Identities=16% Similarity=0.256 Sum_probs=231.9
Q ss_pred eeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 449 ~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
.+.+.+|.+.|++++|+|++++||+++.||.|+|||+.+++....+ .+|...+..+.|+|++..++++..++.+
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i- 79 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-----QVTETPVRAGKFIARKNWIIVGSDDFRI- 79 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEEEGGGTEEEEEETTSEE-
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-----ecCCCcEEEEEEeCCCCEEEEEeCCCeE-
Confidence 4567899999999999999999999999999999999998877765 4677889999999999999999888777
Q ss_pred eecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCC-cEEEEee
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS 605 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~-~~~~~~~ 605 (755)
.+|+. +++.+..+.+|...|++++|+|+ .+|++++.|++|++||+.++ .+...+.
T Consensus 80 ----------------------~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 137 (814)
T 3mkq_A 80 ----------------------RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (814)
T ss_dssp ----------------------EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE
T ss_pred ----------------------EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc
Confidence 44554 45677889999999999999998 68999999999999999987 6666665
Q ss_pred -cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCC-CCEEEEEEcc--CCCEEEEEECCCcEEEEECCC
Q 004404 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLH-EMVTAACYTP--DGQGALVGSYKGSCHLYNTSE 680 (755)
Q Consensus 606 -h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~-~~VtsvafSP--dG~~LasGs~DG~I~lwDl~~ 680 (755)
|...|.+++|+|.++.+|++++.||+|++||+.++... ....++ ..+..++|+| ++.+|++|+.||.|++||+.+
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 99999999999966789999999999999999876654 333333 7899999999 999999999999999999999
Q ss_pred CeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
++....+ .+|...|++++|+|+++ +|++++.|+.|++|| .++.+..+..|...+..+++.|
T Consensus 218 ~~~~~~~---------~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 280 (814)
T 3mkq_A 218 KSCVATL---------EGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (814)
T ss_dssp TEEEEEE---------ECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred CcEEEEE---------cCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence 8876543 37899999999999998 899999999999999 5788999999999999988753
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1.5e-28 Score=263.70 Aligned_cols=273 Identities=14% Similarity=0.173 Sum_probs=221.2
Q ss_pred eecccCCEEEEEEcCC----CCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCC----CceeccccC
Q 004404 452 IQAHNGSIWSIKFSLD----GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE----PTSLSPKHL 523 (755)
Q Consensus 452 l~gH~~~I~sI~fSpd----g~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~d----g~~l~~~s~ 523 (755)
..+|.++|++|+|+|+ ..++++++.++.|+||++.+++....+.......+...+..+.|+++ +.+++++..
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4589999999999984 45666777777999999998887766654444456778999999998 668888888
Q ss_pred CCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcE
Q 004404 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTC 600 (755)
Q Consensus 524 d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~sp-d-~~LaSgs~DgtVrLWDl~t~~~ 600 (755)
++.+ .+|++ +++.+..+.+|...|++++|+| + .+|++++.|++|++||+.+++.
T Consensus 94 dg~i-----------------------~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 150 (366)
T 3k26_A 94 RGII-----------------------RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150 (366)
T ss_dssp TCEE-----------------------EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE
T ss_pred CCEE-----------------------EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE
Confidence 8877 34443 3567788899999999999999 6 7899999999999999999999
Q ss_pred EEEe----ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe-----------------------------cc
Q 004404 601 LKIF----SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-----------------------------ND 647 (755)
Q Consensus 601 ~~~~----~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~-----------------------------~~ 647 (755)
+..+ .|...|.+++|+| ++++|++++.|+.|++||+++++.... ..
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 151 VAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp EEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred EEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 9988 4999999999999 999999999999999999987654321 12
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccc-----cccccccCCCCCeEEEEEccC--CCeEEEEEE
Q 004404 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN-----LQNKKKRSHQRKITGFQFAPG--SSSEVLVTS 720 (755)
Q Consensus 648 ~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~-----~~~~~~~~h~~~Vtsl~fsPd--g~~~L~sgs 720 (755)
+...|.+++|+ +++|++++.||.|++||+.++......... .....+..|...|++++|+|+ +. +|++++
T Consensus 230 ~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~ 306 (366)
T 3k26_A 230 HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGN 306 (366)
T ss_dssp CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEEC
T ss_pred CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEe
Confidence 77899999999 779999999999999999877542111000 011234578889999999999 87 899999
Q ss_pred CCCcEEEEEC--Cc----ceEEeecC--CccEEEEEEEE
Q 004404 721 ADSRIRVVDG--ID----LVHKFKGE--NYVQYMVCIVL 751 (755)
Q Consensus 721 ~Dg~IrVWD~--~~----ll~~~~GH--~~~V~sv~fs~ 751 (755)
.|+.|+|||. ++ .+..+.+| ...|..++|.+
T Consensus 307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC
Confidence 9999999994 32 55688888 68899999864
No 85
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=3.4e-27 Score=263.64 Aligned_cols=284 Identities=18% Similarity=0.349 Sum_probs=235.3
Q ss_pred eecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeee
Q 004404 416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (755)
Q Consensus 416 ~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~ 495 (755)
+.......+++|+.|+.|++|+..+++. ...+.+|.+.|++++|+ +.+|++|+.||+|++||+.+++....+
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~- 195 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKC-----LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL- 195 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCE-----EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcE-----EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE-
Confidence 3334457789999999999999986653 35577999999999998 669999999999999999998877665
Q ss_pred cccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEE
Q 004404 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLS 574 (755)
Q Consensus 496 ~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~ 574 (755)
.+|...+..+.+. +..++++..++.+ .+|++ +++.+..+.+|...|.+++
T Consensus 196 ----~~h~~~v~~~~~~--~~~l~s~s~dg~i-----------------------~~wd~~~~~~~~~~~~~~~~v~~~~ 246 (445)
T 2ovr_B 196 ----YGHTSTVRCMHLH--EKRVVSGSRDATL-----------------------RVWDIETGQCLHVLMGHVAAVRCVQ 246 (445)
T ss_dssp ----CCCSSCEEEEEEE--TTEEEEEETTSEE-----------------------EEEESSSCCEEEEEECCSSCEEEEE
T ss_pred ----CCCCCcEEEEEec--CCEEEEEeCCCEE-----------------------EEEECCCCcEEEEEcCCcccEEEEE
Confidence 4667778777774 4567777777776 34443 3567788899999999999
Q ss_pred ecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCE
Q 004404 575 WSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMV 652 (755)
Q Consensus 575 ~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~V 652 (755)
| ...+|++++.|+.|++||+.+++++..+. |...|.+++| ++.+|++++.|++|++||+++++++. +..+...+
T Consensus 247 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v 322 (445)
T 2ovr_B 247 Y-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 322 (445)
T ss_dssp E-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE
T ss_pred E-CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccE
Confidence 9 34789999999999999999999999887 9999999999 57899999999999999999998874 44566778
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--C
Q 004404 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--G 730 (755)
Q Consensus 653 tsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~ 730 (755)
.++.++ +++|++|+.||.|++||+.+++....+.. ...|...|++++|++ . +|++++.|+.|+||| .
T Consensus 323 ~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~~~~v~~~~~~~--~-~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 323 SGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQG------PNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECS------TTSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTT
T ss_pred EEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEcc------CCCCCCCEEEEEECC--C-EEEEEeCCCeEEEEECCC
Confidence 877774 67999999999999999999887765431 124889999999974 3 899999999999999 5
Q ss_pred CcceEEe-----ecCCccEEEEEEEE
Q 004404 731 IDLVHKF-----KGENYVQYMVCIVL 751 (755)
Q Consensus 731 ~~ll~~~-----~GH~~~V~sv~fs~ 751 (755)
++++..+ .+|...|++++|.+
T Consensus 392 ~~~~~~~~~~~~~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 392 GEFIRNLVTLESGGSGGVVWRIRASN 417 (445)
T ss_dssp CCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred CceeeeeeccccCCCCceEEEEEecC
Confidence 7788888 47888899998864
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.2e-29 Score=271.33 Aligned_cols=246 Identities=11% Similarity=0.117 Sum_probs=194.8
Q ss_pred eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCC--ceeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES--ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 452 l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~--~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
++.|.++|++++|+|++++||+|+.|+.|+||++.++ +....+ .+|...+..+.++|++.+++++..++.+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-----SDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-----CCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-----ecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 3457889999999999999999999999999999877 444443 578889999999999999999988887743
Q ss_pred ecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCc---EEEEee
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT---CLKIFS 605 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~---~~~~~~ 605 (755)
+...... ..++...+.+|...|++++|+|+ .+|++++.|++|++||+.+++ +...+.
T Consensus 82 wd~~~~~-------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (377)
T 3dwl_C 82 YEKRPDG-------------------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK 142 (377)
T ss_dssp C-------------------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC
T ss_pred EEcCCCC-------------------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee
Confidence 3322100 01246778899999999999998 789999999999999999876 355554
Q ss_pred --cCCceEEEEEeeCCCcEEEEEECCCcEEEEECC------------------CCcEEEeccCCCCEEEEEEccCCCEEE
Q 004404 606 --HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP------------------ERQVVDWNDLHEMVTAACYTPDGQGAL 665 (755)
Q Consensus 606 --h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~------------------t~~~v~~~~~~~~VtsvafSPdG~~La 665 (755)
|...|++++|+| ++++|++++.|++|++||+. .++++..+.|...|++++|+|++++|+
T Consensus 143 ~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 143 RPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp SSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEE
T ss_pred cccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEE
Confidence 899999999999 99999999999999999985 244554447778999999999999999
Q ss_pred EEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 666 sGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+++.||.|++||+.+++..... ...+.+|...|++++|+|++. +|++++.|+.+ +|+
T Consensus 222 ~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSAPEQPPRA-----LITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQ 278 (377)
T ss_dssp EEETTTEEC-CEECSTTSCEEE-----CCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EEC
T ss_pred EEeCCCcEEEEECCCCCCccee-----eEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEE
Confidence 9999999999999988762110 022448999999999999986 67766655555 666
No 87
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.2e-29 Score=285.41 Aligned_cols=282 Identities=13% Similarity=0.102 Sum_probs=210.7
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC------CCEEEEEECCCcEEEEeCcCCceeee---
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD------GRYLASAGEDCVIHVWQVVESERKGE--- 493 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd------g~~LaTgs~DGtVrVWdl~t~~~~~~--- 493 (755)
.+++++.|+.|++|++..++... ...+.+.+|.+.|++|+|+|+ +.+||+++.||+|+|||+.+++....
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~-~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHC-VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp -------CEEEEEEEEETTTCCE-EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred hhccCCCCceEEEEEccCCCCCc-eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 36889999999999987765432 223456788999999999997 57999999999999999976643210
Q ss_pred -e--ecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC-C-CceEEeccCCC
Q 004404 494 -L--LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-D-KPICSFQGHLD 568 (755)
Q Consensus 494 -l--~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~-k~i~~l~gH~~ 568 (755)
+ ......+|...+.+++|+++. .+++++.++.+ .+|++. + .+...+.+|..
T Consensus 254 ~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV-----------------------~lWD~~~~~~~~~~~~~H~~ 309 (524)
T 2j04_B 254 MCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFV-----------------------AEFDLTDPEVPSFYDQVHDS 309 (524)
T ss_dssp CCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEE-----------------------EEEETTBCSSCSEEEECSSS
T ss_pred eecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEE-----------------------EEEECCCCCCceEEeecccc
Confidence 0 001124667889999998865 68888888887 455543 2 34567889999
Q ss_pred CEEEE--EecCC--cEEEEEeCCCcEEEEECCCCcEEEEee-cC--CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc
Q 004404 569 DVLDL--SWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS--DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (755)
Q Consensus 569 ~V~~L--~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~--~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~ 641 (755)
.|++| .|+|+ .+|++++.|++|+|||+++++++.++. |. ..|.+|+|+| ++..|++++.|++|+|||++++.
T Consensus 310 ~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~ 388 (524)
T 2j04_B 310 YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAF 388 (524)
T ss_dssp CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTT
T ss_pred cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccc
Confidence 99999 57776 479999999999999999887766664 54 3589999999 89999999999999999999987
Q ss_pred EE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeee--------------ccccc----------------
Q 004404 642 VV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ--------------KSPIN---------------- 690 (755)
Q Consensus 642 ~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~--------------~~~i~---------------- 690 (755)
++ .+..|...|++|+|+|+|++|++|+.||+|++||+....+.. ...+.
T Consensus 389 ~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~ 468 (524)
T 2j04_B 389 AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYP 468 (524)
T ss_dssp CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC
T ss_pred cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecc
Confidence 63 566788999999999999999999999999999975431110 11000
Q ss_pred -----cccccccCCCCCeEEEEEccCCC--eEEEEEECCCcEEEEEC
Q 004404 691 -----LQNKKKRSHQRKITGFQFAPGSS--SEVLVTSADSRIRVVDG 730 (755)
Q Consensus 691 -----~~~~~~~~h~~~Vtsl~fsPdg~--~~L~sgs~Dg~IrVWD~ 730 (755)
.....+.+|...|.+|+|+|+++ ..|++|+.||.||||+.
T Consensus 469 ~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 469 LTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp -------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred cccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence 01123567999999999999953 37999999999999994
No 88
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=1.5e-27 Score=252.87 Aligned_cols=232 Identities=16% Similarity=0.258 Sum_probs=184.1
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC--CCCEEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp--dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
..+++|+.|+.|++|+...... .....+.+|.++|++|+|+| ++++||||+.|++|+|||+.+++..... ..
T Consensus 22 ~~las~s~D~~v~iw~~~~~~~---~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~---~~ 95 (297)
T 2pm7_B 22 KRMATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA---VH 95 (297)
T ss_dssp SEEEEEETTSCEEEEEBCSSCB---CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCE---EE
T ss_pred CEEEEEeCCCEEEEEecCCCCc---EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEE---Ee
Confidence 3578889999999999864322 23456889999999999986 4899999999999999999876422111 12
Q ss_pred cCccccEEEeecCCC--CceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC
Q 004404 500 DGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 500 ~~~~~~v~~v~~s~d--g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp 577 (755)
.+|...+..+.++|+ +.+++++..++.+.++..... .......+.+|...|.+++|+|
T Consensus 96 ~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~--------------------~~~~~~~~~~h~~~v~~~~~~p 155 (297)
T 2pm7_B 96 AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN--------------------GTTSPIIIDAHAIGVNSASWAP 155 (297)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS--------------------SCBCCEEEECCSSCEEEEEECC
T ss_pred ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC--------------------CceeeeeeecccCccceEeecC
Confidence 457788999999997 788999888887744332210 0012356789999999999999
Q ss_pred C--------------cEEEEEeCCCcEEEEECCCCc----EEEEee-cCCceEEEEEeeCC---CcEEEEEECCCcEEEE
Q 004404 578 S--------------QHLLSSSMDKTVRLWHLSSKT----CLKIFS-HSDYVTCIQFNPVD---DRYFISGSLDAKVRIW 635 (755)
Q Consensus 578 d--------------~~LaSgs~DgtVrLWDl~t~~----~~~~~~-h~~~VtsVafsP~d---g~~LaSgS~DgtVrIW 635 (755)
+ .+|++|+.|++|+|||+.++. +...+. |...|.+|+|+| + +.+|++++.|++|+||
T Consensus 156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp-~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEETTSCEEEE
T ss_pred CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC-CCCCceEEEEEECCCcEEEE
Confidence 6 489999999999999998765 555665 999999999999 6 4899999999999999
Q ss_pred ECCCCc---EEEe---ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 004404 636 SIPERQ---VVDW---NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (755)
Q Consensus 636 Dl~t~~---~v~~---~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~ 680 (755)
|+.+.. .... ..+...|.+++|+|+|++|++++.||.|+||+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 997743 1222 34567899999999999999999999999999763
No 89
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=8.4e-28 Score=266.55 Aligned_cols=290 Identities=13% Similarity=0.237 Sum_probs=211.5
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcc------cceeeeeEeeccc------------CCEEEEEEcCCC--CEEEEEECCCcE
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDL------TALYKCQEIQAHN------------GSIWSIKFSLDG--RYLASAGEDCVI 480 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~------~~~~~~q~l~gH~------------~~I~sI~fSpdg--~~LaTgs~DGtV 480 (755)
...+++|+.++.|++|+....+. ........+.+|. +.|++|+|+|++ .+|++++.|++|
T Consensus 40 g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i 119 (447)
T 3dw8_B 40 GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI 119 (447)
T ss_dssp SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCE
T ss_pred CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeE
Confidence 35678899999999999886552 1222356788998 899999999998 799999999999
Q ss_pred EEEeCcCCceeeee-----------------------------------ecccccCccccEEEeecCCCCceeccccCCC
Q 004404 481 HVWQVVESERKGEL-----------------------------------LEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (755)
Q Consensus 481 rVWdl~t~~~~~~l-----------------------------------~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~ 525 (755)
+||++.+.+..... ......+|...+..+.++|++.+++++ .++
T Consensus 120 ~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~ 198 (447)
T 3dw8_B 120 KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDL 198 (447)
T ss_dssp EEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSS
T ss_pred EEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCC
Confidence 99999765432110 001135678889999999999999998 677
Q ss_pred ceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcE---
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTC--- 600 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~--- 600 (755)
.+.++......... .+.... ...+.+|...|++++|+|+ .+|++++.|++|++||+++++.
T Consensus 199 ~i~iwd~~~~~~~~-----------~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 199 RINLWHLEITDRSF-----------NIVDIK---PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp EEEEEETTEEEEEE-----------EEEECC---CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred eEEEEECCCCCcee-----------eeeecc---cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 77544433100000 000000 0136689999999999997 5899999999999999999886
Q ss_pred -EEEee-cCC------------ceEEEEEeeCCCcEEEEEECCCcEEEEECCC-CcEEEeccCCCC--------------
Q 004404 601 -LKIFS-HSD------------YVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWNDLHEM-------------- 651 (755)
Q Consensus 601 -~~~~~-h~~------------~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-~~~v~~~~~~~~-------------- 651 (755)
+..+. |.. .|++++|+| ++++|++++. ++|+|||+++ ++++..+..+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 66775 554 899999999 9999999999 9999999987 665544433332
Q ss_pred --EEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccccccc-----------------------ccccCCCCCeEEE
Q 004404 652 --VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQN-----------------------KKKRSHQRKITGF 706 (755)
Q Consensus 652 --VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~-----------------------~~~~~h~~~Vtsl 706 (755)
+..++|+|++++|++|+.||.|++||+.+++........... .....+...|+.+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 334999999999999999999999999998765311100000 0011345679999
Q ss_pred EEccCCCeEEEEEECCCcEEEEE
Q 004404 707 QFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 707 ~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+|+|++. +|++++.++ +++|.
T Consensus 423 ~~~p~~~-~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 423 AWHPKEN-IIAVATTNN-LYIFQ 443 (447)
T ss_dssp EECSSSS-EEEEECSSC-EEEEE
T ss_pred EECCCCC-EEEEEecce-eeeec
Confidence 9999998 788777765 77776
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=3.8e-27 Score=262.91 Aligned_cols=277 Identities=18% Similarity=0.322 Sum_probs=219.5
Q ss_pred eeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCcee
Q 004404 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK 491 (755)
Q Consensus 412 ~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~ 491 (755)
..+.+.......+++|+.++.|++|+..+++. ...+.+|.+.|++++| ++++|++|+.||+|++||+.+++..
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC-----KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCE-----EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE-----EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE
Confidence 34555555677889999999999999876553 3557799999999999 7889999999999999999998877
Q ss_pred eeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEE
Q 004404 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571 (755)
Q Consensus 492 ~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~ 571 (755)
..+ .+|...+..+.+++ ..++++..++.+..+...... .......+.+|...|.
T Consensus 207 ~~~-----~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~-------------------~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 207 NTL-----IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPT-------------------DITLRRVLVGHRAAVN 260 (435)
T ss_dssp EEE-----CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSS-------------------CCEEEEEECCCSSCEE
T ss_pred EEE-----cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCC-------------------CceeeeEecCCCCcEE
Confidence 665 46777888888864 477777777777433322100 0012266789999999
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCC
Q 004404 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLH 649 (755)
Q Consensus 572 ~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~ 649 (755)
+++| ..++|++++.|++|++||+.+++++..+. |...|.+++|+ +++|++|+.||+|++||+++++++. +..|.
T Consensus 261 ~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 336 (435)
T 1p22_A 261 VVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHE 336 (435)
T ss_dssp EEEE-ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEe-CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc
Confidence 9999 35889999999999999999999999987 99999999994 5899999999999999999998874 45577
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
..|.+++| ++.+|++|+.||.|++||+.++..............+.+|...|++++| ++. +|++++.|++|+|||
T Consensus 337 ~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 337 ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF-QIVSSSHDDTILIWD 411 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS-CEEECCSSSEEEEEC
T ss_pred CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC-EEEEEeCCCEEEEEE
Confidence 89999999 7889999999999999999765421110000011234589999999999 454 799999999999999
Q ss_pred C
Q 004404 730 G 730 (755)
Q Consensus 730 ~ 730 (755)
.
T Consensus 412 ~ 412 (435)
T 1p22_A 412 F 412 (435)
T ss_dssp -
T ss_pred C
Confidence 4
No 91
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.9e-27 Score=254.57 Aligned_cols=232 Identities=16% Similarity=0.219 Sum_probs=182.6
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC--CCCEEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp--dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
..+++|+.|+.|++|++..+.. .....+.+|.++|++|+|+| ++++|+||+.|++|+|||+.+++..... ..
T Consensus 26 ~~lasgs~D~~v~lwd~~~~~~---~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~---~~ 99 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRNGGQ---ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH---EH 99 (316)
T ss_dssp CEEEEEETTTEEEEEEEETTEE---EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE---EE
T ss_pred CEEEEEeCCCeEEEEEecCCCc---EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE---Ec
Confidence 3478889999999999875432 23456889999999999986 4899999999999999999876422111 12
Q ss_pred cCccccEEEeecCCC--CceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC
Q 004404 500 DGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 500 ~~~~~~v~~v~~s~d--g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp 577 (755)
.+|...+..+.|+|+ +.+++++..++.+.++...... .......+.+|...|.+++|+|
T Consensus 100 ~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-------------------~~~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 100 AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-------------------QWEVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-------------------CEEECCBTTSSSSCBCCCEECC
T ss_pred cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-------------------CcceeeeeccccCCcceEEEcc
Confidence 567788899999998 7889999888887544322100 0011344578999999999998
Q ss_pred C------------------cEEEEEeCCCcEEEEECCCC---cEEEEee-cCCceEEEEEeeCCC----cEEEEEECCCc
Q 004404 578 S------------------QHLLSSSMDKTVRLWHLSSK---TCLKIFS-HSDYVTCIQFNPVDD----RYFISGSLDAK 631 (755)
Q Consensus 578 d------------------~~LaSgs~DgtVrLWDl~t~---~~~~~~~-h~~~VtsVafsP~dg----~~LaSgS~Dgt 631 (755)
+ .+|++++.|++|+|||+... +++..+. |...|.+++|+| ++ .+|++++.|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp-~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP-SIGLPTSTIASCSQDGR 239 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC-CSSCSCCEEEEEETTCE
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC-CCCCCCceEEEEcCCCe
Confidence 6 47999999999999999755 3555665 999999999999 65 79999999999
Q ss_pred EEEEECCCC---c--EEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 632 VRIWSIPER---Q--VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 632 VrIWDl~t~---~--~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
|+||++.+. . ...+..+...|.+++|+|++++|++|+.|+.|+||+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999998762 1 12234567899999999999999999999999999975
No 92
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=9.2e-27 Score=249.49 Aligned_cols=269 Identities=14% Similarity=0.226 Sum_probs=217.0
Q ss_pred eeeeeEeecccCCEEEEEEcCC---CCEEEEEECCCcEEEEeCcC-CceeeeeecccccCccccEEEeecCCCCceeccc
Q 004404 446 LYKCQEIQAHNGSIWSIKFSLD---GRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK 521 (755)
Q Consensus 446 ~~~~q~l~gH~~~I~sI~fSpd---g~~LaTgs~DGtVrVWdl~t-~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~ 521 (755)
....+.+.+|.+.|++|+|+|+ |++|++|+.||.|+||++.+ +...... ..+|...+..+.++|++.+++++
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA----QQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEE----EEECSSCEEEEEECTTSSEEEEE
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEE----eccccCCEEEEEECcCCCEEEEE
Confidence 3344567899999999999999 69999999999999999987 4433222 24677889999999999999999
Q ss_pred cCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEe--cCC-cEEEEEeCCCcEEEEECCCC
Q 004404 522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW--SKS-QHLLSSSMDKTVRLWHLSSK 598 (755)
Q Consensus 522 s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~--spd-~~LaSgs~DgtVrLWDl~t~ 598 (755)
..++.+ .+|++.......+.+|...|++++| +|+ .+|++++.|++|++||+.++
T Consensus 105 ~~dg~v-----------------------~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 105 SCDKTA-----------------------KMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp ETTSEE-----------------------EEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred cCCCcE-----------------------EEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence 888877 5666655556667889999999999 777 57999999999999999999
Q ss_pred cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe---ccCCCCEEEEEEccCCCE----EEEEECCC
Q 004404 599 TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW---NDLHEMVTAACYTPDGQG----ALVGSYKG 671 (755)
Q Consensus 599 ~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~---~~~~~~VtsvafSPdG~~----LasGs~DG 671 (755)
+++..+.....+.++.+.+ ..+++++.++.+++|++........ ......+..+++.++... +++++.||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 238 (368)
T 3mmy_A 162 NPMMVLQLPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG 238 (368)
T ss_dssp SCSEEEECSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS
T ss_pred cEEEEEecCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC
Confidence 9999998777888888865 5888899999999999987654321 123356677777766554 99999999
Q ss_pred cEEEEECCCCeeeeccccccccccccCCCC------------CeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEe
Q 004404 672 SCHLYNTSENKLQQKSPINLQNKKKRSHQR------------KITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKF 737 (755)
Q Consensus 672 ~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~------------~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~ 737 (755)
.|++|++......... ..+..|.. .|++++|+|++. +|++++.|+.|+||| .++++..+
T Consensus 239 ~i~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (368)
T 3mmy_A 239 RVAIHYINPPNPAKDN------FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTS 311 (368)
T ss_dssp EEEEEESSCSCHHHHS------EEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEEC
T ss_pred cEEEEecCCCCccccc------eeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCcEEEEe
Confidence 9999999887431110 11223433 799999999997 899999999999999 57889999
Q ss_pred ecCCccEEEEEEEE
Q 004404 738 KGENYVQYMVCIVL 751 (755)
Q Consensus 738 ~GH~~~V~sv~fs~ 751 (755)
.+|...|.+++|.+
T Consensus 312 ~~~~~~v~~~~~s~ 325 (368)
T 3mmy_A 312 EQLDQPISACCFNH 325 (368)
T ss_dssp CCCSSCEEEEEECT
T ss_pred cCCCCCceEEEECC
Confidence 99999999999864
No 93
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=1.9e-27 Score=265.76 Aligned_cols=217 Identities=14% Similarity=0.168 Sum_probs=180.8
Q ss_pred EeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 451 EIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 451 ~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
...+|...|++|+|+| ++++||+|+.||+|+|||+.+++..
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------------------------- 155 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------------------------- 155 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC--------------------------------------
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce--------------------------------------
Confidence 3567999999999999 5679999999999999998654321
Q ss_pred ecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEee--
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-- 605 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~-- 605 (755)
.+..+.+|.+.|++|+|+|. .+|++++.|++|+|||++++.......
T Consensus 156 -----------------------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 206 (435)
T 4e54_B 156 -----------------------------TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD 206 (435)
T ss_dssp -----------------------------EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCS
T ss_pred -----------------------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccC
Confidence 12235689999999999983 789999999999999998765544443
Q ss_pred -cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCC-EEEEEECCCcEEEEECCCCee
Q 004404 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKL 683 (755)
Q Consensus 606 -h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~-~LasGs~DG~I~lwDl~~~~~ 683 (755)
+...+.+++|+| ++.+|++|+.||+|++||++...+..+..|...|++++|+|++. +|++|+.|+.|+|||++..+.
T Consensus 207 ~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~ 285 (435)
T 4e54_B 207 TINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG 285 (435)
T ss_dssp SCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS
T ss_pred CCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc
Confidence 445688999999 99999999999999999998776667777889999999999886 788899999999999998765
Q ss_pred eeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCc
Q 004404 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENY 742 (755)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~ 742 (755)
...+. ...+|...|++++|+|++. +|++++.|++|+||| .+++...+.+|..
T Consensus 286 ~~~~~------~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 286 KASFL------YSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp SSCCS------BCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred cceEE------EeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 54332 2347999999999999998 899999999999999 4677777777654
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.6e-26 Score=246.52 Aligned_cols=272 Identities=8% Similarity=0.013 Sum_probs=211.2
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCC-EEEEEECCCcEEEEeC-cCCceeeeeecccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQV-VESERKGELLEKQE 499 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~-~LaTgs~DGtVrVWdl-~t~~~~~~l~~~~~ 499 (755)
..+++++.++.|++|+....+.. .....+.+|...|++++|+|+++ +|++|+.||.|++|++ .+++. ..+
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~----- 95 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QAL----- 95 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTTTE--EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EEC-----
T ss_pred CEEEEEcCCCeEEEEEeCCCCcc--ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eec-----
Confidence 34677889999999998766521 12234568999999999999999 9999999999999999 77654 222
Q ss_pred cC--ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC
Q 004404 500 DG--HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 500 ~~--~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp 577 (755)
.+ |...+..+.+++ +..++++..++.+..+......... .....+++..+. |...|.+++|+|
T Consensus 96 ~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 96 TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV-------------IAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC-------------EEEEESCSSSSS-SCCCEEEEEECS
T ss_pred cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc-------------ccccCCeeeEEe-eCCceEEEEecC
Confidence 44 778899999999 8899998888887555432100000 000023333444 888999999999
Q ss_pred CcEEEEEeCCCcEEEEECCC-CcEE---EEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC------cEE-Eec
Q 004404 578 SQHLLSSSMDKTVRLWHLSS-KTCL---KIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER------QVV-DWN 646 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t-~~~~---~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~------~~v-~~~ 646 (755)
++ |++++.|+.|++||+.+ +... ....|...|.+++|+|.++++|++++.||.|++|++... +.. .+.
T Consensus 161 ~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 161 SR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp SE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred Cc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 88 99999999999999998 5432 223488999999999844789999999999999999775 433 333
Q ss_pred cCCC---------CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCC-CCCeEEEEEccCCCeEE
Q 004404 647 DLHE---------MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSH-QRKITGFQFAPGSSSEV 716 (755)
Q Consensus 647 ~~~~---------~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h-~~~Vtsl~fsPdg~~~L 716 (755)
.+.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+ .+| ...|++++ |++. +|
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---------~~~h~~~v~~~~--~~~~-~l 307 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF---------AKFNEDSVVKIA--CSDN-IL 307 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC---------CCCSSSEEEEEE--ECSS-EE
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh---------hcccCCCceEec--CCCC-eE
Confidence 4433 8999999999999999999999999999999887653 366 89999999 9887 89
Q ss_pred EEEECCCc-EEEEE
Q 004404 717 LVTSADSR-IRVVD 729 (755)
Q Consensus 717 ~sgs~Dg~-IrVWD 729 (755)
++++.|+. .+.|.
T Consensus 308 ~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 308 CLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEECTHHHHCSS
T ss_pred EEEecCCccccccc
Confidence 99999998 54443
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.5e-26 Score=255.27 Aligned_cols=270 Identities=16% Similarity=0.217 Sum_probs=218.0
Q ss_pred cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCC
Q 004404 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (755)
Q Consensus 351 ~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~d 430 (755)
+++++.|++|+ +|+..+|.........|...|..++++++ ...+++|..+
T Consensus 106 l~~~~~d~~v~-lw~~~~~~~~~~~~~~~~~~v~~v~~s~~-----------------------------~~~l~~~~~d 155 (401)
T 4aez_A 106 VVAVALERNVY-VWNADSGSVSALAETDESTYVASVKWSHD-----------------------------GSFLSVGLGN 155 (401)
T ss_dssp EEEEEETTEEE-EEETTTCCEEEEEECCTTCCEEEEEECTT-----------------------------SSEEEEEETT
T ss_pred EEEEECCCeEE-EeeCCCCcEeEeeecCCCCCEEEEEECCC-----------------------------CCEEEEECCC
Confidence 56788999999 99998887665555445555655555543 2356788899
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCce-eeeeecccccCccccEEEe
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER-KGELLEKQEDGHLNMLLLA 509 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~-~~~l~~~~~~~~~~~v~~v 509 (755)
+.|++|+...++ ..+.+.+|...|.+++| ++.+|++|+.||.|++||+..... ...+ .+|...+..+
T Consensus 156 g~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~ 223 (401)
T 4aez_A 156 GLVDIYDVESQT-----KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTL-----QGHSSEVCGL 223 (401)
T ss_dssp SCEEEEETTTCC-----EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEE
T ss_pred CeEEEEECcCCe-----EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEE-----cCCCCCeeEE
Confidence 999999987654 34556799999999999 467999999999999999985433 3332 5677889999
Q ss_pred ecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEEEEecCC--cEEEEEe-
Q 004404 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS--QHLLSSS- 585 (755)
Q Consensus 510 ~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L~~spd--~~LaSgs- 585 (755)
.++|++..++++..++.+ .+|++. .+++..+.+|...|.+++|+|+ ..+++++
T Consensus 224 ~~~~~~~~l~s~~~d~~v-----------------------~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g 280 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVV-----------------------QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280 (401)
T ss_dssp EECTTSSEEEEEETTSCE-----------------------EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred EEcCCCCEEEEEeCCCeE-----------------------EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence 999999999999888877 344443 4567788899999999999996 5677765
Q ss_pred -CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEE--CCCcEEEEECCCCcEEE---eccCCCCEEEEEEcc
Q 004404 586 -MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS--LDAKVRIWSIPERQVVD---WNDLHEMVTAACYTP 659 (755)
Q Consensus 586 -~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS--~DgtVrIWDl~t~~~v~---~~~~~~~VtsvafSP 659 (755)
.|+.|++||+.+++++..+.+...|.+++|+| ++.+|++++ .||.|++||+.+++... +..|...|.+++|+|
T Consensus 281 s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 359 (401)
T 4aez_A 281 TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP 359 (401)
T ss_dssp TTTCEEEEEETTTCCEEEEEECSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC
Confidence 79999999999999999999999999999999 999999954 89999999999876543 456778999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 660 DGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 660 dG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
+|++|++++.||.|++|++.+++.+..
T Consensus 360 dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 360 DGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp TSSEEEEECTTSEEEEEECCC------
T ss_pred CCCEEEEEeCCCcEEEEECCCCccccc
Confidence 999999999999999999999887654
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=5.7e-27 Score=259.86 Aligned_cols=269 Identities=16% Similarity=0.277 Sum_probs=196.6
Q ss_pred cccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCce-----------eeeeecccccCcc------------ccEEEee
Q 004404 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER-----------KGELLEKQEDGHL------------NMLLLAN 510 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~-----------~~~l~~~~~~~~~------------~~v~~v~ 510 (755)
.|.+.|++|+|+|+|++||+|+.||.|+||++.+++. ...+ .+|. ..+..+.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-----QSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-----ECCCCEEEGGGTEEECCCCCEEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-----ccccccccccccccccCceEEEE
Confidence 4789999999999999999999999999999987662 2222 3455 6788999
Q ss_pred cCCCC--ceeccccCCCceeeecccccccc-ccccc-------------Cccccc---ceeeecCCCceEEe-ccCCCCE
Q 004404 511 GSPEP--TSLSPKHLDNHLEKKRRGRSINR-KSLSL-------------DHMVVP---ETVFALSDKPICSF-QGHLDDV 570 (755)
Q Consensus 511 ~s~dg--~~l~~~s~d~~i~~~~~~~~~~~-~s~s~-------------d~~~~~---~~v~~~s~k~i~~l-~gH~~~V 570 (755)
|+|++ ..++++..++.+.++........ ..... .....+ ..-+.....+...+ .+|...|
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 99998 78888888988877765431110 00000 000000 00011111223343 6899999
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEECC-CCcEEEEe--------ecCCceEEEEEeeCCC-cEEEEEECCCcEEEEECCC
Q 004404 571 LDLSWSKS-QHLLSSSMDKTVRLWHLS-SKTCLKIF--------SHSDYVTCIQFNPVDD-RYFISGSLDAKVRIWSIPE 639 (755)
Q Consensus 571 ~~L~~spd-~~LaSgs~DgtVrLWDl~-t~~~~~~~--------~h~~~VtsVafsP~dg-~~LaSgS~DgtVrIWDl~t 639 (755)
++++|+|+ .+|+++ .|++|++||+. .++++..+ .|...|++++|+| ++ ++|++|+.||+|++||+++
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTT
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcC
Confidence 99999998 677777 89999999999 45566543 4899999999999 77 9999999999999999998
Q ss_pred CcE----E-EeccCCC------------CEEEEEEccCCCEEEEEECCCcEEEEECCC-CeeeeccccccccccccCCCC
Q 004404 640 RQV----V-DWNDLHE------------MVTAACYTPDGQGALVGSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQR 701 (755)
Q Consensus 640 ~~~----v-~~~~~~~------------~VtsvafSPdG~~LasGs~DG~I~lwDl~~-~~~~~~~~i~~~~~~~~~h~~ 701 (755)
++. + .+..+.. .|.+++|+|+|++|++++. +.|++||+.. ++.+..+. +|..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~---------~~~~ 328 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ---------VHEY 328 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE---------SCGG
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee---------cccc
Confidence 875 3 3444443 8999999999999999998 9999999987 66554432 3332
Q ss_pred ---------------CeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEeecCC
Q 004404 702 ---------------KITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGEN 741 (755)
Q Consensus 702 ---------------~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~~GH~ 741 (755)
.+..++|+|+++ +|++++.|+.|+|||. ++.+ .+.+|.
T Consensus 329 ~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~-~~~~~~ 383 (447)
T 3dw8_B 329 LRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDI-TLEASR 383 (447)
T ss_dssp GTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEE-EEECCS
T ss_pred ccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcce-eeeecc
Confidence 134599999998 8999999999999993 4433 455543
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=3e-26 Score=254.66 Aligned_cols=270 Identities=19% Similarity=0.247 Sum_probs=217.7
Q ss_pred CCCCccccccCCCCCCcccccc-CCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCCcEE
Q 004404 355 NKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRV 433 (755)
Q Consensus 355 s~D~tv~~~Wd~~~g~~~~k~k-~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~V 433 (755)
+.|++|+ +||..+|...+.+. .+|...|.+++++++| ..+++|+.|+.|
T Consensus 122 gld~tV~-lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-----------------------------~~lasgs~Dg~v 171 (420)
T 4gga_A 122 ALDNSVY-LWSASSGDILQLLQMEQPGEYISSVAWIKEG-----------------------------NYLAVGTSSAEV 171 (420)
T ss_dssp EETTEEE-EEETTTCCEEEEEECCSTTCCEEEEEECTTS-----------------------------SEEEEEETTSCE
T ss_pred EeCCEEE-EEECCCCCEEEEEEecCCCCcEEEEEECCCC-----------------------------CEEEEEECCCeE
Confidence 4589999 99999998666554 3566667777776643 356889999999
Q ss_pred EEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCC
Q 004404 434 RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP 513 (755)
Q Consensus 434 riwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~ 513 (755)
++|+..+++ .++.+.+|...|.++.++ +.+|++|+.|+.+++|+.......... ..+|...+..+.+.+
T Consensus 172 ~iWd~~~~~-----~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~----~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 172 QLWDVQQQK-----RLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT----LSGHSQEVCGLRWAP 240 (420)
T ss_dssp EEEETTTTE-----EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE----EECCSSCEEEEEECT
T ss_pred EEEEcCCCc-----EEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE----ecccccceeeeeecC
Confidence 999998654 345678999999998875 679999999999999998765543332 256778899999999
Q ss_pred CCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEE--EeCCCc
Q 004404 514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLS--SSMDKT 589 (755)
Q Consensus 514 dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaS--gs~Dgt 589 (755)
++..++++..++.+.++...... .....+..+..|...|.+++|+|. ..+++ |+.|++
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~------------------~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~ 302 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGE------------------GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 302 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCS------------------SCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE
T ss_pred CCCeeeeeeccccceEEeecccc------------------ccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE
Confidence 99999999888877544322110 012345677889999999999996 55655 457999
Q ss_pred EEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEE--CCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEE
Q 004404 590 VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS--LDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALV 666 (755)
Q Consensus 590 VrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS--~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~Las 666 (755)
|++||+.+++++..+.+...+.++.|+| +++.+++++ .|++|+|||+.+++++. +..|...|++++|+|+|++|++
T Consensus 303 I~iwd~~t~~~~~~~~~~~~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 303 IRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred EEEEeCCccccceeeccccceeeeeecC-CCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999999999999999888999999999 888888765 79999999999998874 5567889999999999999999
Q ss_pred EECCCcEEEEECCCCeee
Q 004404 667 GSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 667 Gs~DG~I~lwDl~~~~~~ 684 (755)
|+.|++|+|||+......
T Consensus 382 ~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 382 AAADETLRLWRCFELDPA 399 (420)
T ss_dssp EETTTEEEEECCSCSSCC
T ss_pred EecCCeEEEEECCCCCcc
Confidence 999999999999775544
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=4.9e-26 Score=247.77 Aligned_cols=287 Identities=19% Similarity=0.269 Sum_probs=219.6
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeec--------ccccC
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLE--------KQEDG 501 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~--------~~~~~ 501 (755)
..+++|+....+. ...+.+|.+.|++|+|+| ++++||+|+.||.|+||++.+++....+.. ....+
T Consensus 23 ~~~~v~~~~~~~~-----~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
T 4a11_B 23 STRRVLGLELNKD-----RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97 (408)
T ss_dssp HHHHHHTEEECTT-----EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTC
T ss_pred CcceeeccccCcc-----eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccccccc
Confidence 3455565543332 234568999999999999 999999999999999999988776554421 11235
Q ss_pred ccccEEEeecCC-CCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--
Q 004404 502 HLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-- 578 (755)
Q Consensus 502 ~~~~v~~v~~s~-dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-- 578 (755)
|...+..+.++| ++.+++++..++.+ .+|++..........+...+.++.|++.
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i-----------------------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTL-----------------------KVWDTNTLQTADVFNFEETVYSHHMSPVST 154 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEE-----------------------EEEETTTTEEEEEEECSSCEEEEEECSSCS
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeE-----------------------EEeeCCCCccceeccCCCceeeeEeecCCC
Confidence 888999999999 77788888878777 4555543333333347788999999985
Q ss_pred --cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCc-EEEEEECCCcEEEEECCCCc-EEE-e-------
Q 004404 579 --QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQ-VVD-W------- 645 (755)
Q Consensus 579 --~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~-~LaSgS~DgtVrIWDl~t~~-~v~-~------- 645 (755)
.++++++.|+.|++||+.+++++..+. |...|++++|+| ++. +|++++.||.|++||+++.. .+. +
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence 389999999999999999999888886 999999999999 766 69999999999999998764 222 2
Q ss_pred --------ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEE
Q 004404 646 --------NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (755)
Q Consensus 646 --------~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~ 717 (755)
..+...|.+++|+|++++|++++.||.|++||+.+++......... .......+ .+.+.......++
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~ 308 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV----CNNSKKGL-KFTVSCGCSSEFV 308 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC----CCCCSSCC-CCEECCSSSSCEE
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc----cccccccc-eeEEecCCCceEE
Confidence 3566789999999999999999999999999999987654332111 00111112 2222222223688
Q ss_pred EEECCCcEEEEE--CCcceEEeecCCccEEEEEEEE
Q 004404 718 VTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 718 sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs~ 751 (755)
+++.|+.|++|| .++++..+.+|...|.+++|.+
T Consensus 309 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 344 (408)
T 4a11_B 309 FVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344 (408)
T ss_dssp EEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred EEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence 888999999999 5889999999999999999874
No 99
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.7e-28 Score=280.66 Aligned_cols=238 Identities=11% Similarity=0.065 Sum_probs=178.0
Q ss_pred EEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCC------CceeccccCCCceeeeccccccccccccc
Q 004404 470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE------PTSLSPKHLDNHLEKKRRGRSINRKSLSL 543 (755)
Q Consensus 470 ~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~d------g~~l~~~s~d~~i~~~~~~~~~~~~s~s~ 543 (755)
+|++++.|++|+||++.+++...... .....+...+..+.|+|+ +.+|++++.++.+.++.........
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~-~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~---- 249 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKV-QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV---- 249 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEE-EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS----
T ss_pred hhccCCCCceEEEEEccCCCCCceEE-EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc----
Confidence 34446688999999997765432110 001234567888999986 5789989889888766543211000
Q ss_pred CcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-EEEEee-cCCceEEE--EEeeCC
Q 004404 544 DHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT-CLKIFS-HSDYVTCI--QFNPVD 619 (755)
Q Consensus 544 d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~-~~~~~~-h~~~VtsV--afsP~d 619 (755)
.......++...+.+|...|++++|++++.|++|+.||+|++||+.++. +...+. |...|++| +|+| +
T Consensus 250 -------~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~ 321 (524)
T 2j04_B 250 -------HVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-F 321 (524)
T ss_dssp -------SEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-T
T ss_pred -------ccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-C
Confidence 0000112455678899999999999998899999999999999999764 444454 99999999 5677 7
Q ss_pred C-cEEEEEECCCcEEEEECCCCcEEE-eccCC--CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccccccccc
Q 004404 620 D-RYFISGSLDAKVRIWSIPERQVVD-WNDLH--EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695 (755)
Q Consensus 620 g-~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~--~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~ 695 (755)
+ .+|++|+.|++|+|||++++++.. +..+. ..|.+++|+|+++.|++++.|++|++||++.+.....+
T Consensus 322 g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l-------- 393 (524)
T 2j04_B 322 EDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL-------- 393 (524)
T ss_dssp SCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE--------
T ss_pred CCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee--------
Confidence 6 899999999999999998876432 22222 35789999999999999999999999999987765432
Q ss_pred ccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 696 ~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
.+|...|++|+|+|+++ +|++|+.|++|+|||.
T Consensus 394 -~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 394 -VSRETTITAIGVSRLHP-MVLAGSADGSLIITNA 426 (524)
T ss_dssp -EECSSCEEEEECCSSCC-BCEEEETTTEEECCBS
T ss_pred -ecCCCceEEEEeCCCCC-eEEEEECCCEEEEEec
Confidence 37999999999999998 7999999999999994
No 100
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=1.9e-26 Score=253.96 Aligned_cols=270 Identities=17% Similarity=0.189 Sum_probs=209.6
Q ss_pred cccCCCCCccccccCCCCCCcc-cccc--CCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEe
Q 004404 351 VEEGNKDSFDLNNNGSSGGGMK-SKKK--GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG 427 (755)
Q Consensus 351 ~~sgs~D~tv~~~Wd~~~g~~~-~k~k--~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg 427 (755)
+++++.|++|+ +|+....... .... .+|...|..+++++ +...+++++
T Consensus 50 ~~~~~~~g~i~-v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p----------------------------~~~~~l~s~ 100 (402)
T 2aq5_A 50 ICEASGGGAFL-VLPLGKTGRVDKNVPLVCGHTAPVLDIAWCP----------------------------HNDNVIASG 100 (402)
T ss_dssp EBCCSSSCCEE-EEETTCCEECCTTCCCBCCCSSCEEEEEECT----------------------------TCTTEEEEE
T ss_pred EEEEcCCCEEE-EEECccCCCCCCCCceEecCCCCEEEEEeCC----------------------------CCCCEEEEE
Confidence 45688999999 9998553221 1111 24555555555443 123567888
Q ss_pred CCCcEEEEeeCCCCcccce--eeeeEeecccCCEEEEEEcCCC-CEEEEEECCCcEEEEeCcCCceeeeeecccccCccc
Q 004404 428 QERVRVRQYGKSCKDLTAL--YKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504 (755)
Q Consensus 428 ~~dg~Vriwd~~~~~~~~~--~~~q~l~gH~~~I~sI~fSpdg-~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~ 504 (755)
+.|+.|++|++..+..... .....+.+|...|++|+|+|++ .+|++++.|++|+|||+.+++..
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~------------- 167 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV------------- 167 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE-------------
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc-------------
Confidence 9999999999987644211 2345678999999999999998 69999999999999998665422
Q ss_pred cEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEe--ccCCCCEEEEEecCC-cEE
Q 004404 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF--QGHLDDVLDLSWSKS-QHL 581 (755)
Q Consensus 505 ~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l--~gH~~~V~~L~~spd-~~L 581 (755)
..+ .+|...|++++|+|+ .+|
T Consensus 168 --------------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 168 --------------------------------------------------------LTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp --------------------------------------------------------EEECTTTCCSCEEEEEECTTSSCE
T ss_pred --------------------------------------------------------EEEecCCCCCceEEEEECCCCCEE
Confidence 223 468889999999998 689
Q ss_pred EEEeCCCcEEEEECCCCcEEEEe-e-cCCc-eEEEEEeeCCCcEEEEE---ECCCcEEEEECCCCcE---EEeccCCCCE
Q 004404 582 LSSSMDKTVRLWHLSSKTCLKIF-S-HSDY-VTCIQFNPVDDRYFISG---SLDAKVRIWSIPERQV---VDWNDLHEMV 652 (755)
Q Consensus 582 aSgs~DgtVrLWDl~t~~~~~~~-~-h~~~-VtsVafsP~dg~~LaSg---S~DgtVrIWDl~t~~~---v~~~~~~~~V 652 (755)
++++.|++|++||+++++.+..+ . |... +.+++|+| ++.+|++| +.|+.|++||+++... .....+...+
T Consensus 192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 99999999999999999999888 3 7665 89999999 89999999 7899999999988653 3444667889
Q ss_pred EEEEEccCCCEEEE-EECCCcEEEEECCCCee-eeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 653 TAACYTPDGQGALV-GSYKGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 653 tsvafSPdG~~Las-Gs~DG~I~lwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.+++|+|++++|++ |+.||.|++||+.+++. ...+. ...|...|++++|+|++. +++ +.++.+++|+
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~-------~~~~~~~v~~~~~sp~~~-~~~--s~~~~~~~~~ 339 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS-------MFSSKESQRGMGYMPKRG-LEV--NKCEIARFYK 339 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE-------EECCSSCCSEEEECCGGG-SCG--GGTEEEEEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec-------ccccCCcccceEEecccc-cce--ecceeEEEEE
Confidence 99999999999975 55799999999998773 22211 113678999999999986 343 4677999999
No 101
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=5.3e-25 Score=240.17 Aligned_cols=275 Identities=14% Similarity=0.167 Sum_probs=219.3
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEE-EEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~L-aTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
.+++++..++.|++|+..+++.. +.+.+|. .+.+++|+|++++| ++++.|++|++||+.+++....+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~-----~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~---- 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVT-----ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---- 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEE-----EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC----
T ss_pred EEEEEcCCCCEEEEEECCCCeEE-----EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC----
Confidence 45788999999999999866533 3455564 58999999999976 6777999999999998887766531
Q ss_pred CccccEEEeecCCCCceec-cccCCCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEEEEecCC
Q 004404 501 GHLNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS 578 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~-~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~L~~spd 578 (755)
...+..+.++|++..++ ++..++.+ .+|++. ++.+..+.. ...+.+++|+|+
T Consensus 73 --~~~v~~~~~spdg~~l~~~~~~~~~v-----------------------~v~d~~~~~~~~~~~~-~~~~~~~~~s~d 126 (391)
T 1l0q_A 73 --GSSPQGVAVSPDGKQVYVTNMASSTL-----------------------SVIDTTSNTVAGTVKT-GKSPLGLALSPD 126 (391)
T ss_dssp --SSSEEEEEECTTSSEEEEEETTTTEE-----------------------EEEETTTTEEEEEEEC-SSSEEEEEECTT
T ss_pred --CCCccceEECCCCCEEEEEECCCCEE-----------------------EEEECCCCeEEEEEeC-CCCcceEEECCC
Confidence 12778899999998664 44344554 344443 334444444 456899999998
Q ss_pred -cEE-EEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEE-EEEECCCcEEEEECCCCcEEEeccCCCCEEEE
Q 004404 579 -QHL-LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYF-ISGSLDAKVRIWSIPERQVVDWNDLHEMVTAA 655 (755)
Q Consensus 579 -~~L-aSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~L-aSgS~DgtVrIWDl~t~~~v~~~~~~~~Vtsv 655 (755)
..| ++++.|+.|++||+.+++.+..+.....+.+++|+| ++++| ++++.++.|++||+.+++.+....+...+.++
T Consensus 127 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 205 (391)
T 1l0q_A 127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGI 205 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEE
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccce
Confidence 445 688889999999999999999988777889999999 88776 67788999999999999988888888899999
Q ss_pred EEccCCCEEEEEE---CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--C
Q 004404 656 CYTPDGQGALVGS---YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--G 730 (755)
Q Consensus 656 afSPdG~~LasGs---~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~ 730 (755)
+|+|+|++|++++ .++.|++||+.+++.+..+. .| ..+.+++|+|+++.++++++.|+.|++|| .
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~---------~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP---------VG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE---------CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe---------cC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 9999999999988 68999999999988765432 23 35789999999984446778899999999 5
Q ss_pred CcceEEeecCCcc
Q 004404 731 IDLVHKFKGENYV 743 (755)
Q Consensus 731 ~~ll~~~~GH~~~ 743 (755)
++++..+..|...
T Consensus 276 ~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 276 NTITATMAVGKNP 288 (391)
T ss_dssp TEEEEEEECSSSE
T ss_pred CcEEEEEECCcCC
Confidence 7888888887665
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.7e-26 Score=244.71 Aligned_cols=231 Identities=16% Similarity=0.271 Sum_probs=187.1
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC--CCEEEEEECCCcEEEEeCcCCc--eeeeeecc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQVVESE--RKGELLEK 497 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd--g~~LaTgs~DGtVrVWdl~t~~--~~~~l~~~ 497 (755)
..++++..++.|++|+..... ....+.+.+|.+.|++|+|+++ +++|++|+.||.|+|||+.+++ ....
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---- 96 (379)
T 3jrp_A 24 KRLATCSSDKTIKIFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV---- 96 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE----
T ss_pred CEEEEEECCCcEEEEecCCCc---ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee----
Confidence 356788899999999986332 2334567899999999999987 9999999999999999998876 3333
Q ss_pred cccCccccEEEeecCCC--CceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEe
Q 004404 498 QEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~d--g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~ 575 (755)
...+...+..+.++|+ +.+++++..++.+..+..... .......+.+|...|.+++|
T Consensus 97 -~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--------------------~~~~~~~~~~~~~~v~~~~~ 155 (379)
T 3jrp_A 97 -HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN--------------------GTTSPIIIDAHAIGVNSASW 155 (379)
T ss_dssp -ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT--------------------SCCCEEEEECCTTCEEEEEE
T ss_pred -ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC--------------------CceeeEEecCCCCceEEEEE
Confidence 2557788999999999 899999888887743332210 11244567789999999999
Q ss_pred cC-------------C-cEEEEEeCCCcEEEEECCCCc----EEEEee-cCCceEEEEEeeCC---CcEEEEEECCCcEE
Q 004404 576 SK-------------S-QHLLSSSMDKTVRLWHLSSKT----CLKIFS-HSDYVTCIQFNPVD---DRYFISGSLDAKVR 633 (755)
Q Consensus 576 sp-------------d-~~LaSgs~DgtVrLWDl~t~~----~~~~~~-h~~~VtsVafsP~d---g~~LaSgS~DgtVr 633 (755)
+| + .+|++++.|+.|++||+.++. ++..+. |...|++++|+| + +.+|++++.||.|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~dg~i~ 234 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYLASVSQDRTCI 234 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEETTSCEE
T ss_pred cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-CCCCCCeEEEEeCCCEEE
Confidence 99 4 789999999999999998764 334444 899999999999 7 89999999999999
Q ss_pred EEECCCCc---EEEe---ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 004404 634 IWSIPERQ---VVDW---NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 634 IWDl~t~~---~v~~---~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~ 681 (755)
+||+.++. .... ..+...|++++|+|+|++|++++.||.|++|++...
T Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99998863 2222 236678999999999999999999999999999843
No 103
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=1.6e-26 Score=253.12 Aligned_cols=274 Identities=13% Similarity=0.074 Sum_probs=189.0
Q ss_pred cCCEEEEEEcCCCCEEEEEECCC-------cEEEEeCcCCceeee--e---ecccccCccccEEEeecCCCCceeccccC
Q 004404 456 NGSIWSIKFSLDGRYLASAGEDC-------VIHVWQVVESERKGE--L---LEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~LaTgs~DG-------tVrVWdl~t~~~~~~--l---~~~~~~~~~~~v~~v~~s~dg~~l~~~s~ 523 (755)
.-||++++|+||+++||+||.|. .|+||++........ + ......++...+.++.+. +..++++..
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 35899999999999999998654 599999866543211 1 011112333344444333 333333222
Q ss_pred CCceeeecccccccccccccCcccccceeeecC--CCc--------eEEeccCCCCEEEEEecCCc-EEE--EEeCCCcE
Q 004404 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFALS--DKP--------ICSFQGHLDDVLDLSWSKSQ-HLL--SSSMDKTV 590 (755)
Q Consensus 524 d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s--~k~--------i~~l~gH~~~V~~L~~spd~-~La--Sgs~DgtV 590 (755)
+....++. ...+..+ ++|.+. ... ......+...+.+++|+|++ +++ +++.|++|
T Consensus 92 ~~~~~l~s---------~~~d~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i 159 (365)
T 4h5i_A 92 ENSTKITQ---------GKGNKHL---RKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM 159 (365)
T ss_dssp CCHHHHHH---------TSCCCCE---EEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE
T ss_pred CCccEEEE---------ecCCCcE---EEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE
Confidence 21111100 0001100 122111 011 11123455668999999994 454 44579999
Q ss_pred EEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE---eccCCCCEEEEEEccCCCEEEEE
Q 004404 591 RLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD---WNDLHEMVTAACYTPDGQGALVG 667 (755)
Q Consensus 591 rLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~---~~~~~~~VtsvafSPdG~~LasG 667 (755)
+|||+.+++++..+.|...|++|+|+| ++++|++++. +.+++|+..+++.+. ...+...|.+++|+|++++++++
T Consensus 160 ~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 160 RIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEE
T ss_pred EEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEE
Confidence 999999999999999999999999999 9999999985 456677777666542 23455689999999999999999
Q ss_pred ECCC----cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEe-ecC
Q 004404 668 SYKG----SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKF-KGE 740 (755)
Q Consensus 668 s~DG----~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~-~GH 740 (755)
+.++ .+++|++......... ...+.+|...|++++|+|+|+ +|++|+.|++|+||| .++++..+ ++|
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~~~gH 311 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSVLR-----SKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDLSMSKIFKQAH 311 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEEEE-----EEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred ecCCcceeEEeecccccceeccee-----eeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence 9887 5888998776543221 123458999999999999998 899999999999999 46788875 799
Q ss_pred CccEEEEEEEE
Q 004404 741 NYVQYMVCIVL 751 (755)
Q Consensus 741 ~~~V~sv~fs~ 751 (755)
...|++++|+|
T Consensus 312 ~~~V~~v~fSp 322 (365)
T 4h5i_A 312 SFAITEVTISP 322 (365)
T ss_dssp SSCEEEEEECT
T ss_pred cCCEEEEEECC
Confidence 99999999975
No 104
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=1.1e-25 Score=241.24 Aligned_cols=263 Identities=13% Similarity=0.145 Sum_probs=208.7
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..+++|+.++.|++|+...... .....+.+|.+.|++++|+|++++|++++.||.|++||+.+++.... ..
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~------~~ 125 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI------AQ 125 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSC---EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE------EE
T ss_pred eEEEEECCCCcEEEEEcCCCCc---eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee------cc
Confidence 5678899999999999875221 12245778999999999999999999999999999999988875543 34
Q ss_pred ccccEEEeec--CCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC
Q 004404 502 HLNMLLLANG--SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS 578 (755)
Q Consensus 502 ~~~~v~~v~~--s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd 578 (755)
|...+..+.+ ++++.+++++..++.+. +|++ .++++..+..|. .+.++.+.+
T Consensus 126 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~-----------------------vwd~~~~~~~~~~~~~~-~~~~~~~~~- 180 (368)
T 3mmy_A 126 HDAPVKTIHWIKAPNYSCVMTGSWDKTLK-----------------------FWDTRSSNPMMVLQLPE-RCYCADVIY- 180 (368)
T ss_dssp CSSCEEEEEEEECSSCEEEEEEETTSEEE-----------------------EECSSCSSCSEEEECSS-CEEEEEEET-
T ss_pred ccCceEEEEEEeCCCCCEEEEccCCCcEE-----------------------EEECCCCcEEEEEecCC-CceEEEecC-
Confidence 6778889999 89999999988888774 4443 345566666664 577777775
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEe-e--cCCceEEEEEeeCCCcE----EEEEECCCcEEEEECCCCc---EE-Eecc
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIF-S--HSDYVTCIQFNPVDDRY----FISGSLDAKVRIWSIPERQ---VV-DWND 647 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~-~--h~~~VtsVafsP~dg~~----LaSgS~DgtVrIWDl~t~~---~v-~~~~ 647 (755)
..+++++.++.+++|++......... . +...+.++++.+ +... +++++.|+.|++|++.... .+ .+..
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 47888889999999999876544333 2 556677777776 5544 9999999999999998863 22 3333
Q ss_pred CCC------------CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeE
Q 004404 648 LHE------------MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (755)
Q Consensus 648 ~~~------------~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~ 715 (755)
+.. .|++++|+|++++|++|+.||.|++||+.+++.+..+ ..|...|++++|+|++. +
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~s~~g~-~ 329 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS---------EQLDQPISACCFNHNGN-I 329 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC---------CCCSSCEEEEEECTTSS-C
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe---------cCCCCCceEEEECCCCC-e
Confidence 333 6999999999999999999999999999999887653 37899999999999998 8
Q ss_pred EEEEECCCcEEEEE
Q 004404 716 VLVTSADSRIRVVD 729 (755)
Q Consensus 716 L~sgs~Dg~IrVWD 729 (755)
|++++.|+..+.|+
T Consensus 330 l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 330 FAYASSYDWSKGHE 343 (368)
T ss_dssp EEEEECCCSTTCGG
T ss_pred EEEEeccccccccc
Confidence 99999888665555
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=6.6e-26 Score=253.11 Aligned_cols=260 Identities=16% Similarity=0.223 Sum_probs=201.8
Q ss_pred eEeecccCCEEEEEEcCC-CCEEEEEECCCcEEEEeCcC----------CceeeeeecccccCccccEEEeecCCCCc-e
Q 004404 450 QEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVE----------SERKGELLEKQEDGHLNMLLLANGSPEPT-S 517 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpd-g~~LaTgs~DGtVrVWdl~t----------~~~~~~l~~~~~~~~~~~v~~v~~s~dg~-~ 517 (755)
..+.+|.+.|++|+|+|+ +.+||+++.||.|+||++.+ ......+ .+|...+..+.|++++. +
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~~ 196 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-----RGHQKEGYGLSWNPNLNGY 196 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-----ECCSSCCCCEEECTTSTTE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-----cCCCCCeEEEEeCCCCCCe
Confidence 445689999999999997 68999999999999999976 2222222 46677888999999988 8
Q ss_pred eccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEEC
Q 004404 518 LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHL 595 (755)
Q Consensus 518 l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl 595 (755)
++++..++.+.++......... . ...+...+.+|...|.+++|+|+ ..|++++.|+.|++||+
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~-----------~----~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~ 261 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEH-----------R----VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT 261 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGG-----------G----EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred EEEEeCCCeEEEEeCCCCCCCC-----------c----eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 8888888888555443210000 0 00124567799999999999994 78999999999999999
Q ss_pred CCC---cEEEEe-ecCCceEEEEEeeCCCc-EEEEEECCCcEEEEECCC-CcE-EEeccCCCCEEEEEEccCCC-EEEEE
Q 004404 596 SSK---TCLKIF-SHSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPE-RQV-VDWNDLHEMVTAACYTPDGQ-GALVG 667 (755)
Q Consensus 596 ~t~---~~~~~~-~h~~~VtsVafsP~dg~-~LaSgS~DgtVrIWDl~t-~~~-v~~~~~~~~VtsvafSPdG~-~LasG 667 (755)
+++ +.+..+ .|...|++|+|+| ++. +|++|+.||+|++||+++ ..+ ..+..|...|++++|+|+++ +|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~ 340 (430)
T 2xyi_A 262 RNNNTSKPSHTVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340 (430)
T ss_dssp TCSCSSSCSEEEECCSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCCCCcceeEeecCCCCeEEEEeCC-CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence 986 566666 4999999999999 665 799999999999999987 333 35556888999999999985 68999
Q ss_pred ECCCcEEEEECCCCeeeecccc-----ccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 668 SYKGSCHLYNTSENKLQQKSPI-----NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 668 s~DG~I~lwDl~~~~~~~~~~i-----~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+.||.|+|||+........... ........+|...|++++|+|+++.+|++++.|+.|+||+.
T Consensus 341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 9999999999987322110000 00012235789999999999999868999999999999993
No 106
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=4.9e-27 Score=259.49 Aligned_cols=229 Identities=14% Similarity=0.145 Sum_probs=171.8
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC--------CCCEEEEEECCCcEEEEeCcCCceee
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--------DGRYLASAGEDCVIHVWQVVESERKG 492 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp--------dg~~LaTgs~DGtVrVWdl~t~~~~~ 492 (755)
..++++++.|++|++|+...++.........+.+|.+.|++|+|+| |+++|||||.|++|+|||+.++..
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~-- 178 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP-- 178 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE--
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce--
Confidence 4568899999999999998887766666667889999999999998 889999999999999999854432
Q ss_pred eeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEE
Q 004404 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572 (755)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~ 572 (755)
+..+.+|...|.+
T Consensus 179 -------------------------------------------------------------------~~~~~~~~~~v~~ 191 (393)
T 4gq1_A 179 -------------------------------------------------------------------ILAGYPLSSPGIS 191 (393)
T ss_dssp -------------------------------------------------------------------EEEEEECSSCEEE
T ss_pred -------------------------------------------------------------------eeeecCCCCCcEE
Confidence 2234567888999
Q ss_pred EEecCC--cEEEEEeCCCcEEEEECCCCcEEEEe--------------------------ecCCceEEEEEeeCCCcEEE
Q 004404 573 LSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF--------------------------SHSDYVTCIQFNPVDDRYFI 624 (755)
Q Consensus 573 L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~--------------------------~h~~~VtsVafsP~dg~~La 624 (755)
++|+|+ .+|++++.|++|++||+.+++..... .|...|.++.|.+.++..|+
T Consensus 192 v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~ 271 (393)
T 4gq1_A 192 VQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGIL 271 (393)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEE
T ss_pred EEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEE
Confidence 999997 47999999999999999877543321 26678899999844999999
Q ss_pred EEECCCcEEEEECCCCcEEEe-ccCCCC------------------EEEEEEcc--CCCEEEEEECCCcEEEEECCCCee
Q 004404 625 SGSLDAKVRIWSIPERQVVDW-NDLHEM------------------VTAACYTP--DGQGALVGSYKGSCHLYNTSENKL 683 (755)
Q Consensus 625 SgS~DgtVrIWDl~t~~~v~~-~~~~~~------------------VtsvafSP--dG~~LasGs~DG~I~lwDl~~~~~ 683 (755)
+++.|+++++||+..++.... ..+... ...+.|+| ++.++++|+.||.|+|||+.+++.
T Consensus 272 s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~ 351 (393)
T 4gq1_A 272 AMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS 351 (393)
T ss_dssp EECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC
T ss_pred EEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE
Confidence 999999999999987654321 112212 22234444 344677788999999999998876
Q ss_pred eeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.... ..|..+|++++|+|+|+ +|++++.|| |.+|.
T Consensus 352 ~~~~---------~~~~~~V~svafspdG~-~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 352 NSIP---------IQLGMPIVDFCWHQDGS-HLAIATEGS-VLLTR 386 (393)
T ss_dssp CEEE---------EECSSCEEEEEECTTSS-EEEEEESSE-EEEEE
T ss_pred EEEe---------cCCCCcEEEEEEcCCCC-EEEEEeCCC-eEEEE
Confidence 6542 26888999999999998 889888776 55554
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.9e-28 Score=275.04 Aligned_cols=321 Identities=11% Similarity=0.029 Sum_probs=231.6
Q ss_pred HHHHHHhhcc---cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeee
Q 004404 341 IVQELMRRQN---VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSAT 417 (755)
Q Consensus 341 ~V~~l~~~~~---~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~ 417 (755)
.|.+|++++| +++++.|+||+ ++..+ +.++ +|.+.|..++++++|
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~---d~~~~---~~l~-gh~~~v~~V~FsPdg------------------------- 64 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG---QPKYA---KDIN-CNSKNLFHVKEFPLE------------------------- 64 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE---EECCC---SCCS-SBGGGTEEEEEECCC-------------------------
T ss_pred cEEEEEECCCCCEEEEEcCCceee---ccccc---ceec-CCCccEEEEEECCCC-------------------------
Confidence 3778899998 89999999998 44444 3334 899999999998865
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecc
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~ 497 (755)
.++++.+|+..... .. .+ .|...|++++|||+|++||+++.||+|+||+... ....+. .
T Consensus 65 -----------~~~~~~~~~~~~~~---~~---~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~ 123 (588)
T 2j04_A 65 -----------FENKLDFELAQQNG---LL---NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-S 123 (588)
T ss_dssp -----------CCCTTTTSCCCSSC---SS---TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-C
T ss_pred -----------CcceEEEEeCCCce---Ee---ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-C
Confidence 12222223222111 11 11 4688999999999999999999999999999644 222221 0
Q ss_pred cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCC--------ceEEe----cc
Q 004404 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK--------PICSF----QG 565 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k--------~i~~l----~g 565 (755)
...-....+..++|+|++.++++++.++.+. +|++..+ .+.++ .+
T Consensus 124 ~~~~~~~sv~svafSPDG~~LAsgs~DGtVk-----------------------IWd~~~~~l~~~~~i~l~ti~~~~~g 180 (588)
T 2j04_A 124 KGNLSSRTYHCFEWNPIESSIVVGNEDGELQ-----------------------FFSIRKNSENTPEFYFESSIRLSDAG 180 (588)
T ss_dssp SSCSTTTCEEEEEECSSSSCEEEEETTSEEE-----------------------EEECCCCTTTCCCCEEEEEEECSCTT
T ss_pred CCccccccEEEEEEcCCCCEEEEEcCCCEEE-----------------------EEECCCCccccccceeeeeeeccccc
Confidence 0011123588999999999999999999884 4444433 24565 67
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcE---EEEe--ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC
Q 004404 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC---LKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (755)
Q Consensus 566 H~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~---~~~~--~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~ 640 (755)
|...|.+++|+|++ +++++.|++|++||+..+.. .+++ .|...|.+++|+ +.+|++++ +++|++||+.++
T Consensus 181 h~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 181 SKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp CCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTT
T ss_pred ccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCC
Confidence 88899999999999 99999999999999988773 3566 378899999998 48888887 699999999999
Q ss_pred cEE-EeccCCCCEEEEEE--ccCCCEEEEEECCCcEEEEECCCCe------eee-------ccccccccccccCCCCCeE
Q 004404 641 QVV-DWNDLHEMVTAACY--TPDGQGALVGSYKGSCHLYNTSENK------LQQ-------KSPINLQNKKKRSHQRKIT 704 (755)
Q Consensus 641 ~~v-~~~~~~~~Vtsvaf--SPdG~~LasGs~DG~I~lwDl~~~~------~~~-------~~~i~~~~~~~~~h~~~Vt 704 (755)
+.. ...+|...|..++| +|+++.|+++..+|+ ++|....-. ... .+...........+...|.
T Consensus 256 ~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~ 334 (588)
T 2j04_A 256 SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIH 334 (588)
T ss_dssp EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEE
T ss_pred eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEE
Confidence 884 44488899999999 999999999999999 999975211 100 0000000000112244599
Q ss_pred EEEEccCCCeEEEEEECCCcEEEEECCcceEEeecCCccEEEEEEEEE
Q 004404 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGENYVQYMVCIVLF 752 (755)
Q Consensus 705 sl~fsPdg~~~L~sgs~Dg~IrVWD~~~ll~~~~GH~~~V~sv~fs~F 752 (755)
+++|+|+|+ .+++++. | .+.+-+|+--...++.++|.|.
T Consensus 335 ~va~SPdG~-~lA~~~~-----i---~~~~~~y~i~s~~~~~i~f~pL 373 (588)
T 2j04_A 335 GISLSPDGY-SIAIVYD-----M---ERVAFKYKIASEQSFNIMFAPL 373 (588)
T ss_dssp EEEECTTSS-EEEEEEE-----E---ECSSCCCCCSSSCCEEEEEEES
T ss_pred EEEECCCCC-EEEEEEe-----c---cCceeEEeeccceEEEEEEEEc
Confidence 999999998 6777763 2 3334456667777888888774
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.94 E-value=4e-25 Score=246.56 Aligned_cols=247 Identities=18% Similarity=0.356 Sum_probs=209.8
Q ss_pred ecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecc
Q 004404 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (755)
Q Consensus 453 ~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~ 532 (755)
.+|...|+++.| ++++|++|+.||+|++||+.+++....+ .+|...+.++.+ ++..++++..++.+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~--~~~~l~sg~~dg~i----- 195 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-----TGHTGSVLCLQY--DERVIITGSSDSTV----- 195 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-----CCCSSCEEEEEC--CSSEEEEEETTSCE-----
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-----cCCCCcEEEEEE--CCCEEEEEcCCCeE-----
Confidence 467788999887 7899999999999999999988877665 567788888888 77888888888877
Q ss_pred cccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEE---EEe-ecC
Q 004404 533 GRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCL---KIF-SHS 607 (755)
Q Consensus 533 ~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~---~~~-~h~ 607 (755)
.+|++ +++.+..+.+|...|.+++|++ +.|++++.|++|++||+.++... ..+ .|.
T Consensus 196 ------------------~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 256 (435)
T 1p22_A 196 ------------------RVWDVNTGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 256 (435)
T ss_dssp ------------------EEEESSSCCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCS
T ss_pred ------------------EEEECCCCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC
Confidence 34443 4567788999999999999985 69999999999999999987654 334 399
Q ss_pred CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 608 ~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
..|.+++| ++++|++|+.||+|++||+++++++. +..+...|.+++|+ +++|++|+.||.|++||+.+++.+..
T Consensus 257 ~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~ 331 (435)
T 1p22_A 257 AAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV 331 (435)
T ss_dssp SCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 99999999 46899999999999999999998874 45577899999994 78999999999999999999887765
Q ss_pred cccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--Cc---------ceEEeecCCccEEEEEE
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--ID---------LVHKFKGENYVQYMVCI 749 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~---------ll~~~~GH~~~V~sv~f 749 (755)
+ .+|...|++++| ++. +|++++.||.|+|||. +. ++..+.+|...|++++|
T Consensus 332 ~---------~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 393 (435)
T 1p22_A 332 L---------EGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF 393 (435)
T ss_dssp E---------CCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred E---------eCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe
Confidence 3 379999999999 444 8999999999999992 23 78999999999998876
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=3.6e-25 Score=233.81 Aligned_cols=254 Identities=16% Similarity=0.194 Sum_probs=192.8
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcC--CCCEEEEEECCCcEEEEeCcCCceeee----ee
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGE----LL 495 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSp--dg~~LaTgs~DGtVrVWdl~t~~~~~~----l~ 495 (755)
..+++++.++.|++|+...+... ......+.+|...|++|+|+| ++++|++|+.||+|+|||+.+++.... ..
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 102 (351)
T 3f3f_A 24 RHVATCSSDQHIKVFKLDKDTSN-WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNK 102 (351)
T ss_dssp SEEEEEETTSEEEEEEECSSSCC-EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEE
T ss_pred CEEEEeeCCCeEEEEECCCCCCc-ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcce
Confidence 35788899999999999865432 233466789999999999999 699999999999999999987642110 00
Q ss_pred cccccCccccEEEeecCCC--CceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEE
Q 004404 496 EKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (755)
Q Consensus 496 ~~~~~~~~~~v~~v~~s~d--g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L 573 (755)
......+...+..+.++|+ +.+++++..++.+.++..........+.... ... .......+|...|.++
T Consensus 103 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~ 173 (351)
T 3f3f_A 103 LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS-----EMK----VLSIPPANHLQSDFCL 173 (351)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE-----EEE----SCSCCCSSCSCCCEEE
T ss_pred eeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc-----ccc----ccccccCCcccceeEE
Confidence 1112567788999999999 9999999888888766544322111111000 000 0011123688899999
Q ss_pred EecCC----cEEEEEeCCCcEEEEECCCCcE--EEEee-cCCceEEEEEeeCCC----cEEEEEECCCcEEEEECCCC--
Q 004404 574 SWSKS----QHLLSSSMDKTVRLWHLSSKTC--LKIFS-HSDYVTCIQFNPVDD----RYFISGSLDAKVRIWSIPER-- 640 (755)
Q Consensus 574 ~~spd----~~LaSgs~DgtVrLWDl~t~~~--~~~~~-h~~~VtsVafsP~dg----~~LaSgS~DgtVrIWDl~t~-- 640 (755)
+|+|+ ..|++++.|+.+.+|+...++. +..+. |...|++++|+| ++ ++|++|+.||+|++||++++
T Consensus 174 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 174 SWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred EeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 99994 7899999999999998887765 44554 999999999999 76 89999999999999999764
Q ss_pred --------------------------------------------cEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 004404 641 --------------------------------------------QVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (755)
Q Consensus 641 --------------------------------------------~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~l 675 (755)
+.+ .+..|...|++++|+|++++|++|+.||.|++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 253 PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332 (351)
T ss_dssp --------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEE
Confidence 223 34457789999999999999999999999999
Q ss_pred EECCCCeeeec
Q 004404 676 YNTSENKLQQK 686 (755)
Q Consensus 676 wDl~~~~~~~~ 686 (755)
|++.+++....
T Consensus 333 w~~~~~~~~~~ 343 (351)
T 3f3f_A 333 WKATYSNEFKC 343 (351)
T ss_dssp EEECTTSCEEE
T ss_pred EecCcCcchhh
Confidence 99998766543
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.2e-26 Score=272.00 Aligned_cols=248 Identities=17% Similarity=0.258 Sum_probs=201.4
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCC--ceeeeeecccccCccccEEEeecCCC--CceeccccCCC
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES--ERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDN 525 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~--~~~~~l~~~~~~~~~~~v~~v~~s~d--g~~l~~~s~d~ 525 (755)
+.+.+|.++|++++|+|++++|++|+.||+|+||++... +....+ .+|...+..+.++++ +..++++..++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-----~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-----TGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-----cCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 456899999999999999999999999999999999743 333333 578889999999988 89999998888
Q ss_pred ceeeecccccccccccccCcccccceeeecCCC---ceEEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCCCc
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDK---PICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT 599 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k---~i~~l~gH~~~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~~ 599 (755)
.+. +|++... .+..+.+|...|++++|+|+ ..|++++.||+|++||+.++.
T Consensus 78 ~I~-----------------------vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 78 KVL-----------------------IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp CEE-----------------------EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred eEE-----------------------EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 874 3433322 56778899999999999996 589999999999999998873
Q ss_pred ---EEEEeecCCceEEEEEeeC------------CCcEEEEEECCCcEEEEECCCCc----EE-EeccCCCCEEEEEEcc
Q 004404 600 ---CLKIFSHSDYVTCIQFNPV------------DDRYFISGSLDAKVRIWSIPERQ----VV-DWNDLHEMVTAACYTP 659 (755)
Q Consensus 600 ---~~~~~~h~~~VtsVafsP~------------dg~~LaSgS~DgtVrIWDl~t~~----~v-~~~~~~~~VtsvafSP 659 (755)
......|...|.+++|+|. ++.+|++|+.||+|++||++++. +. .+..|...|++++|+|
T Consensus 135 ~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 214 (753)
T 3jro_A 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (753)
T ss_dssp CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc
Confidence 2223349999999999994 37899999999999999998763 33 4456788999999999
Q ss_pred C---CCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 660 D---GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 660 d---G~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+ +++|++|+.||.|++||+.++........ .....|...|++++|+|++. +|++++.||.|+|||.
T Consensus 215 ~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL----LKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKE 283 (753)
T ss_dssp CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCB----SSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBC
T ss_pred CCCCCCEEEEEecCCEEEEecCCCCCCcceeEE----eccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEec
Confidence 9 89999999999999999998753221111 22346889999999999998 8999999999999993
No 111
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=7.9e-25 Score=230.58 Aligned_cols=277 Identities=18% Similarity=0.227 Sum_probs=216.9
Q ss_pred HHhhcc-cccCCCCCccccccCCCCCCcccccc-CCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCc
Q 004404 345 LMRRQN-VEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQD 422 (755)
Q Consensus 345 l~~~~~-~~sgs~D~tv~~~Wd~~~g~~~~k~k-~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~ 422 (755)
|+++++ +.+.+.|++|+ +||..+|+..+.++ .+|...|.++++++++ .
T Consensus 31 l~WS~~~~lAvg~D~tV~-iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-----------------------------~ 80 (318)
T 4ggc_A 31 VDWSSGNVLAVALDNSVY-LWSASSGDILQLLQMEQPGEYISSVAWIKEG-----------------------------N 80 (318)
T ss_dssp EEECTTSEEEEEETTEEE-EEETTTCCEEEEEECCSTTCCEEEEEECTTS-----------------------------S
T ss_pred EEECCCCEEEEEeCCEEE-EEECCCCCEEEEEEecCCCCeEEEEEECCCC-----------------------------C
Confidence 345544 33334689999 99999998766554 3566667766666542 4
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCc
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
.+++|+.|+.|++|+..+++. .+.+.+|...+.++.+ ++.+|++++.++.+++|+.......... ..+|
T Consensus 81 ~l~sgs~Dg~v~iw~~~~~~~-----~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~----~~~~ 149 (318)
T 4ggc_A 81 YLAVGTSSAEVQLWDVQQQKR-----LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT----LSGH 149 (318)
T ss_dssp EEEEEETTSEEEEEETTTTEE-----EEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE----EECC
T ss_pred EEEEEECCCcEEEeecCCcee-----EEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE----EcCc
Confidence 568899999999999986653 4567799999887665 4679999999999999998776544332 3567
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cE
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QH 580 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~ 580 (755)
...+..+.+.+++..++++..++.+.++....... ..........|.+.|.++.++|. ..
T Consensus 150 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 211 (318)
T 4ggc_A 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG------------------GWVPLQTFTQHQGAVKAVAWCPWQSNV 211 (318)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT------------------BSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc------------------cccceeeecccCCceEEEEecCCCCcE
Confidence 78889999999999999998888875443321100 11234556778889999999986 33
Q ss_pred --EEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEE--CCCcEEEEECCCCcEEE-eccCCCCEEEE
Q 004404 581 --LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS--LDAKVRIWSIPERQVVD-WNDLHEMVTAA 655 (755)
Q Consensus 581 --LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS--~DgtVrIWDl~t~~~v~-~~~~~~~Vtsv 655 (755)
+++++.+++|++||...........+...+..+.|+| ++..+++++ .|++|+|||+++++++. +..|...|+++
T Consensus 212 ~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l 290 (318)
T 4ggc_A 212 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL 290 (318)
T ss_dssp EEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred EEEEecCCCCEEEEEecccccccccccceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 4567789999999999999988888999999999999 777777655 79999999999998874 45678899999
Q ss_pred EEccCCCEEEEEECCCcEEEEECCCC
Q 004404 656 CYTPDGQGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 656 afSPdG~~LasGs~DG~I~lwDl~~~ 681 (755)
+|+|+|++|++|+.||+|+|||+.+.
T Consensus 291 ~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 291 TMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99999999999999999999998764
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-24 Score=243.83 Aligned_cols=240 Identities=12% Similarity=0.082 Sum_probs=188.7
Q ss_pred cccCCEEEEEEcCCCCEE-EEEECCCcEEEEeCc--CCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeee
Q 004404 454 AHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVV--ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~L-aTgs~DGtVrVWdl~--t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
+|.+.|++++|+|++++| ++++.||.|+||++. +++....+.. ..+...+..+.|+|++..++++..++.+..+
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR---FCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE---EECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec---ccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 567789999999999996 899999999999998 6766555421 2445678899999999999998777766433
Q ss_pred cccccccccccccCcccccceeeecCCC-ceEEeccCCCCEEEEEecCC---c-EEEEEeCCCcEEEEECCCCcEEEEe-
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFALSDK-PICSFQGHLDDVLDLSWSKS---Q-HLLSSSMDKTVRLWHLSSKTCLKIF- 604 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~s~k-~i~~l~gH~~~V~~L~~spd---~-~LaSgs~DgtVrLWDl~t~~~~~~~- 604 (755)
...... ... ++..+.+|...|++++|+|+ + +|++++.|++|++||+.+++++..+
T Consensus 177 ~~~~~~-------------------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 177 DINSIP-------------------EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp ETTSCC-------------------CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred ecCCcc-------------------cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence 221100 001 33467789999999999997 6 7999999999999999999888774
Q ss_pred -ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc--------------------------CCCCEEEEEE
Q 004404 605 -SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND--------------------------LHEMVTAACY 657 (755)
Q Consensus 605 -~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~--------------------------~~~~Vtsvaf 657 (755)
.|...|++++|+ ++++|++++.|++|+|||+.+++++..+. ....|..++|
T Consensus 238 ~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 238 FGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred cCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 499999999999 78999999999999999999998775443 2357999999
Q ss_pred ccCCCEEEEEE-CCCcEEEEEC--CCC---eeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC-------CCc
Q 004404 658 TPDGQGALVGS-YKGSCHLYNT--SEN---KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA-------DSR 724 (755)
Q Consensus 658 SPdG~~LasGs-~DG~I~lwDl--~~~---~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~-------Dg~ 724 (755)
+|++++|++++ .++.|++|++ ..+ ..... +..| ..|.+++|+|++ ++++.+. +..
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~---------~~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~ 383 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQI---------ITFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNF 383 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEE---------EECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCS
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccE---------eccC-CceEEEEecCCc--EEEEEecccCCCCCCcc
Confidence 99999999999 8999999999 544 33222 2355 789999999953 4555432 556
Q ss_pred EEEEE
Q 004404 725 IRVVD 729 (755)
Q Consensus 725 IrVWD 729 (755)
|+||.
T Consensus 384 i~v~~ 388 (450)
T 2vdu_B 384 AKFIE 388 (450)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88887
No 113
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-25 Score=241.69 Aligned_cols=229 Identities=7% Similarity=0.024 Sum_probs=178.7
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
..++++|+.|+.|++|+..+++....+ . ...|.++.|+|+ |++++.|++|++|+......
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~-----~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~---------- 107 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTI-----T--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQIT---------- 107 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEE-----E--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEE----------
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEE-----e--cCCceeeeeCCc---eEEecCCCeEEEEEccCceE----------
Confidence 356789999999999999877643322 2 467888899988 99999999999999753211
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEe-ccCCCCEEEEEecC-
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF-QGHLDDVLDLSWSK- 577 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l-~gH~~~V~~L~~sp- 577 (755)
+++. ..+.+..+ .+|...|.+++|+|
T Consensus 108 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 108 ---------------------------------------------------ILDSKTNKVLREIEVDSANEIIYMYGHNE 136 (343)
T ss_dssp ---------------------------------------------------EEETTTCCEEEEEECCCSSCEEEEECCC-
T ss_pred ---------------------------------------------------EeecCCcceeEEeecCCCCCEEEEEcCCC
Confidence 1111 11222233 36778999999999
Q ss_pred -C-cEEEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE--Eecc-CCC
Q 004404 578 -S-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV--DWND-LHE 650 (755)
Q Consensus 578 -d-~~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v--~~~~-~~~ 650 (755)
+ .+|++++.|++|++||+.+++++..+. +...|++++|+| ++.+|++|+.||+|+|||+++++.+ .+.. |..
T Consensus 137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~ 215 (343)
T 3lrv_A 137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA 215 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC
Confidence 6 789999999999999999999977763 666899999999 9999999999999999999998865 4555 688
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCe--EEEEEccCCCeEEEEEEC-CCcEEE
Q 004404 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI--TGFQFAPGSSSEVLVTSA-DSRIRV 727 (755)
Q Consensus 651 ~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~V--tsl~fsPdg~~~L~sgs~-Dg~IrV 727 (755)
.|++++|+|+|.+|++++ ++.|++||+++++....+.. +..|...+ .+++|+|+++ +|++++. |+.|+|
T Consensus 216 ~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v 287 (343)
T 3lrv_A 216 KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT------YTIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTI 287 (343)
T ss_dssp CEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC------CBC-----CCEEEEECTTSS-EEEEEETTTTEEEE
T ss_pred CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc------cccccccccceEEEECCCCC-EEEEecCCCCcEEE
Confidence 999999999999999999 55999999998876543321 11233333 4699999998 8899888 999999
Q ss_pred EE
Q 004404 728 VD 729 (755)
Q Consensus 728 WD 729 (755)
|+
T Consensus 288 ~~ 289 (343)
T 3lrv_A 288 YK 289 (343)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-24 Score=244.52 Aligned_cols=267 Identities=13% Similarity=0.073 Sum_probs=209.1
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc---eeeeeecccc----------------------------------
Q 004404 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE---RKGELLEKQE---------------------------------- 499 (755)
Q Consensus 457 ~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~---~~~~l~~~~~---------------------------------- 499 (755)
.+|.+|+|+|+|++|+++ .++.|++||+.+++ .+..+.....
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999977766 57899999999888 4444321100
Q ss_pred ---------------cCccccEEEeecCCCCcee-ccccCCCceeeecccccccccccccCcccccceeeecC---CCce
Q 004404 500 ---------------DGHLNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS---DKPI 560 (755)
Q Consensus 500 ---------------~~~~~~v~~v~~s~dg~~l-~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s---~k~i 560 (755)
.++...+..+.++|++..+ +++..++.+ .+|++. ++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v-----------------------~iwd~~~~~~~~~ 140 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSL-----------------------LVFDVDKTSKNVL 140 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEE-----------------------EEEEECSSSSSCE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeE-----------------------EEEECcCCCCcee
Confidence 1233468899999999986 777777766 344433 4455
Q ss_pred EEec--cCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEE----Ee-ecCCceEEEEEeeCC---CcEEEEEECC
Q 004404 561 CSFQ--GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK----IF-SHSDYVTCIQFNPVD---DRYFISGSLD 629 (755)
Q Consensus 561 ~~l~--gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~----~~-~h~~~VtsVafsP~d---g~~LaSgS~D 629 (755)
..+. .|...|++++|+|+ .+|++++.|+.|++|++.++.... .+ .|...|++++|+| + +++|++|+.|
T Consensus 141 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d 219 (450)
T 2vdu_B 141 KLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRD 219 (450)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETT
T ss_pred eeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCC
Confidence 5565 67789999999998 789999999999999998876543 44 4999999999999 8 8999999999
Q ss_pred CcEEEEECCCCcEEEe--ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccc-------------
Q 004404 630 AKVRIWSIPERQVVDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK------------- 694 (755)
Q Consensus 630 gtVrIWDl~t~~~v~~--~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~------------- 694 (755)
++|++||+.+++.+.. ..|...|++++|+ ++++|++|+.|+.|++||+.+++.+..+.......
T Consensus 220 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (450)
T 2vdu_B 220 EHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRF 298 (450)
T ss_dssp SCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----
T ss_pred CcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccc
Confidence 9999999999887643 3677899999999 99999999999999999999998776553211000
Q ss_pred ---cccCCCCCeEEEEEccCCCeEEEEEE-CCCcEEEEEC----C---cceEEeecCCccEEEEEEEE
Q 004404 695 ---KKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVDG----I---DLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 695 ---~~~~h~~~Vtsl~fsPdg~~~L~sgs-~Dg~IrVWD~----~---~ll~~~~GH~~~V~sv~fs~ 751 (755)
........|.+++|+|+++ +|++++ .|+.|+|||. + .++..+.+| ..+.+++|.+
T Consensus 299 ~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 299 QNENNDIIEFAVSKIIKSKNLP-FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp ------CBCCCEEEEEECSSSS-EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred cccccccceEEEEEEEEeCCCC-EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence 0013356799999999998 788887 8999999996 2 567888888 7899988864
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=2.4e-24 Score=238.36 Aligned_cols=270 Identities=13% Similarity=0.151 Sum_probs=217.9
Q ss_pred CCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccc
Q 004404 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 420 s~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~ 499 (755)
...+++++..++.|++|+..+++.........+.+|.+.|++++|+|+++++++++.|+.|++||+.+++....+
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~----- 207 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV----- 207 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE-----
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE-----
Confidence 445677888899999999988776544433356789999999999999999999999999999999888776665
Q ss_pred cCccccEEEeecCCCCceec-cccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecC
Q 004404 500 DGHLNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg~~l~-~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~sp 577 (755)
..+...+..+.+++++..++ ++..++.+ .+|++ +++.+..+..+ ..+.+++|+|
T Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i-----------------------~~~d~~~~~~~~~~~~~-~~~~~~~~~~ 263 (433)
T 3bws_A 208 DLTGKWSKILLYDPIRDLVYCSNWISEDI-----------------------SVIDRKTKLEIRKTDKI-GLPRGLLLSK 263 (433)
T ss_dssp ECSSSSEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTTTEEEEECCCC-SEEEEEEECT
T ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCCcE-----------------------EEEECCCCcEEEEecCC-CCceEEEEcC
Confidence 24556778899999988764 44355555 33443 33444455544 4599999999
Q ss_pred C-cEEEEEe--------CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCc-EEEEEECCCcEEEEECCCCcEEEecc
Q 004404 578 S-QHLLSSS--------MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQVVDWND 647 (755)
Q Consensus 578 d-~~LaSgs--------~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~-~LaSgS~DgtVrIWDl~t~~~v~~~~ 647 (755)
+ ..|++++ .|+.|++||+.+++.+..+.|...+.+++|+| +++ ++++++.|+.|++||+.+++++....
T Consensus 264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 342 (433)
T 3bws_A 264 DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKVQKSIP 342 (433)
T ss_dssp TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence 8 5788877 58899999999999988888888999999999 775 55677899999999999999887777
Q ss_pred CCCCEEEEEEccCCCEEEEEEC---------------CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 648 LHEMVTAACYTPDGQGALVGSY---------------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 648 ~~~~VtsvafSPdG~~LasGs~---------------DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
+...+.+++|+|+|++|++++. ||.|++||+.+++....+. +...+.+++|+|++
T Consensus 343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~----------~~~~~~~~~~s~dg 412 (433)
T 3bws_A 343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE----------AGNQPTGLDVSPDN 412 (433)
T ss_dssp CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE----------CSSSEEEEEECTTS
T ss_pred CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec----------CCCCCceEEEcCCC
Confidence 8889999999999999999876 5799999999988776532 24578999999999
Q ss_pred CeEEEEEE-CCCcEEEEEC
Q 004404 713 SSEVLVTS-ADSRIRVVDG 730 (755)
Q Consensus 713 ~~~L~sgs-~Dg~IrVWD~ 730 (755)
+ +|++++ .|++|++|+.
T Consensus 413 ~-~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 413 R-YLVISDFLDHQIRVYRR 430 (433)
T ss_dssp C-EEEEEETTTTEEEEEEE
T ss_pred C-EEEEEECCCCeEEEEEe
Confidence 8 677666 5999999984
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.9e-25 Score=241.05 Aligned_cols=259 Identities=11% Similarity=-0.010 Sum_probs=186.3
Q ss_pred cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCC
Q 004404 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (755)
Q Consensus 351 ~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~d 430 (755)
+++|+.|++|+ +||..++....++. ...+..+ ...+. +++++.|
T Consensus 51 l~sg~~Dg~v~-iwd~~~~~~~~~~~---~~~v~~~-------------------------------~~~~~-~~s~s~D 94 (343)
T 3lrv_A 51 CMCRCEDGALH-FTQLKDSKTITTIT---TPNPRTG-------------------------------GEHPA-IISRGPC 94 (343)
T ss_dssp EEEEEETTEEE-EEEESSSSCEEEEE---EECCCTT-------------------------------CCCCS-EEEECST
T ss_pred EEEECCCCcEE-EEECCCCcEEEEEe---cCCceee-------------------------------eeCCc-eEEecCC
Confidence 89999999999 99998876544332 0001100 11111 6777888
Q ss_pred cEEEEeeCCCCc----ccceeeeeEe-ecccCCEEEEEEcC--CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCcc
Q 004404 431 VRVRQYGKSCKD----LTALYKCQEI-QAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (755)
Q Consensus 431 g~Vriwd~~~~~----~~~~~~~q~l-~gH~~~I~sI~fSp--dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~ 503 (755)
+.|++|+..... .......+.+ .+|.+.|.+++|+| ++++|++++.||+|++||+.+++.....
T Consensus 95 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--------- 165 (343)
T 3lrv_A 95 NRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH--------- 165 (343)
T ss_dssp TEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE---------
T ss_pred CeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE---------
Confidence 888888765321 0011112222 36789999999999 9999999999999999999765432110
Q ss_pred ccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEE
Q 004404 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL 582 (755)
Q Consensus 504 ~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~La 582 (755)
...|...|++++|+|+ .+|+
T Consensus 166 -----------------------------------------------------------~~~~~~~i~~~~~~pdg~~la 186 (343)
T 3lrv_A 166 -----------------------------------------------------------SAKSDVEYSSGVLHKDSLLLA 186 (343)
T ss_dssp -----------------------------------------------------------CCCSSCCCCEEEECTTSCEEE
T ss_pred -----------------------------------------------------------ecCCCCceEEEEECCCCCEEE
Confidence 0124456899999998 6788
Q ss_pred EEeCCCcEEEEECCCCcEE-EEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc----CCCCE--E
Q 004404 583 SSSMDKTVRLWHLSSKTCL-KIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND----LHEMV--T 653 (755)
Q Consensus 583 Sgs~DgtVrLWDl~t~~~~-~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~----~~~~V--t 653 (755)
+|+.|++|+|||+++++.+ ..+. |..+|++++|+| ++.+|++++ |++|++||+++.+.+.... +...+ .
T Consensus 187 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccce
Confidence 9999999999999999877 6664 899999999999 999999999 5599999999876543222 11223 4
Q ss_pred EEEEccCCCEEEEEEC-CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEcc---CCCeEEEEEECCCcEEEEE
Q 004404 654 AACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP---GSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 654 svafSPdG~~LasGs~-DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsP---dg~~~L~sgs~Dg~IrVWD 729 (755)
+++|+|+|++|++++. ++.|++|++......... ..+..+.|.| +.. .|++++.|+.++++-
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-------------DEESALCLQSDTADFT-DMDVVCGDGGIAAIL 330 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-------------EEEEECCC----CCCC-EEEEEEETTEEEEEE
T ss_pred EEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-------------cCceeEecCccccccc-eeEEEecCCceEEEE
Confidence 6999999999999998 999999999765433210 4567777887 665 788899999998875
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.9e-24 Score=232.54 Aligned_cols=242 Identities=11% Similarity=-0.006 Sum_probs=171.3
Q ss_pred EEeCCCcEEEEeeCCCCcccceeeeeEeecccC-------------------------CEEEEEEcCC----CCEEEEEE
Q 004404 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG-------------------------SIWSIKFSLD----GRYLASAG 475 (755)
Q Consensus 425 ~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~-------------------------~I~sI~fSpd----g~~LaTgs 475 (755)
+.......|++|+.... .+..+..++++|+. .|++|+|+|| ++++++++
T Consensus 57 ~~~~~~~~v~lw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 57 IITACEDVVSLWKALDA--WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEESSEEEEEEESSS--SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEeccceEEEcccCCC--ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 34445667888887754 22334455666655 4555566667 77777776
Q ss_pred CCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec
Q 004404 476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL 555 (755)
Q Consensus 476 ~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~ 555 (755)
. .++||++.+++.+... ..+|...+...++++++.
T Consensus 135 ~--~~~v~~l~~g~lv~ss----~~g~d~~V~~~~~s~dG~--------------------------------------- 169 (356)
T 2w18_A 135 N--IKAVLGLTKRRLVSSS----GTLSDQQVEVMTFAEDGG--------------------------------------- 169 (356)
T ss_dssp E--EEEEEEETTTEEEEEE----SSSTTCEEEEEEECTTSC---------------------------------------
T ss_pred C--eEEEEecCCCcEEEec----ccCCCCcEEEEEECCCCc---------------------------------------
Confidence 4 3777877554433331 234555555555555443
Q ss_pred CCCceEEeccCCCCEEEEEecC---C-cEEEEEeCCCcEEEEECCCCcEEEEee-c---CCceEEEEEeeCCCcEE----
Q 004404 556 SDKPICSFQGHLDDVLDLSWSK---S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H---SDYVTCIQFNPVDDRYF---- 623 (755)
Q Consensus 556 s~k~i~~l~gH~~~V~~L~~sp---d-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h---~~~VtsVafsP~dg~~L---- 623 (755)
.+..+.+|...+..++|++ + ..|++++.|++|+|||+.++++++++. | ...+.+++|+| ++.++
T Consensus 170 ---~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s 245 (356)
T 2w18_A 170 ---GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLS 245 (356)
T ss_dssp ---EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC
T ss_pred ---eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEec
Confidence 3445668888888999988 3 689999999999999999999999996 3 34688889999 88876
Q ss_pred --------EEEECCCcEEEEECCCCcEEEec------cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccc
Q 004404 624 --------ISGSLDAKVRIWSIPERQVVDWN------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (755)
Q Consensus 624 --------aSgS~DgtVrIWDl~t~~~v~~~------~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i 689 (755)
++|+.|++|++||..+++.+... .+...+.+..++ +.++++|+.|++|+|||+.+++.+.++
T Consensus 246 ~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL-- 321 (356)
T 2w18_A 246 HPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALL-- 321 (356)
T ss_dssp ------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEE--
T ss_pred cCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEe--
Confidence 66889999999999999876543 333344444444 889999999999999999999988764
Q ss_pred ccccccccCCCCCeE-EEEEccCCCeEEEEEECCCcEEEEE
Q 004404 690 NLQNKKKRSHQRKIT-GFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 690 ~~~~~~~~~h~~~Vt-sl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.+|...+. .++|+|+|+ +|++|+.|++|||||
T Consensus 322 -------~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd 354 (356)
T 2w18_A 322 -------PPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYH 354 (356)
T ss_dssp -------CCC--CCCCEEEECSSSS-EEEEECTTSCEEEEE
T ss_pred -------cCCCCCeEEEEEECCCCC-EEEEEECCCcEEEec
Confidence 37776655 689999998 899999999999998
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.9e-25 Score=249.84 Aligned_cols=239 Identities=15% Similarity=0.146 Sum_probs=184.4
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~ 534 (755)
-...|.+|+|+|||+++||++.|++|+ |....+ .+ .+|...++.++++|++ .++.+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l-----~gh~~~v~~V~FsPdg-------~~~~~------- 69 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DI-----NCNSKNLFHVKEFPLE-------FENKL------- 69 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CC-----SSBGGGTEEEEEECCC-------CCCTT-------
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc---ee-----cCCCccEEEEEECCCC-------CcceE-------
Confidence 457899999999999999999999999 643332 22 5789999999999998 12222
Q ss_pred cccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCC-----
Q 004404 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSD----- 608 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~----- 608 (755)
.+|...+..+..+ .|...|++++|+|+ .+|++++.||+|+|||... ++..+.|..
T Consensus 70 ----------------~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~ 130 (588)
T 2j04_A 70 ----------------DFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSR 130 (588)
T ss_dssp ----------------TTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTT
T ss_pred ----------------EEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccc
Confidence 1222222222222 45788999999999 6799999999999999644 666666554
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE-------EEe-----ccCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-------VDW-----NDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~-------v~~-----~~~~~~VtsvafSPdG~~LasGs~DG~I~lw 676 (755)
.|.+++|+| ++++|++|+.||+|+|||+.++.+ +.. .+|..+|.+++|+|+| |++++.|+.|++|
T Consensus 131 sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlW 207 (588)
T 2j04_A 131 TYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSM 207 (588)
T ss_dssp CEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEE
T ss_pred cEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEE
Confidence 499999999 999999999999999999998852 333 4456799999999999 8889999999999
Q ss_pred ECCCCeeeeccccccccccc-cCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC-CcceEEee-cCCccEEEEEE
Q 004404 677 NTSENKLQQKSPINLQNKKK-RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG-IDLVHKFK-GENYVQYMVCI 749 (755)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~-~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~-~~ll~~~~-GH~~~V~sv~f 749 (755)
|+.++...... ..+ .+|...|.+++|+ +. .|++++ +++|++||. +..+..++ ||...++.+.|
T Consensus 208 d~~~~~~~~~~------~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~ 273 (588)
T 2j04_A 208 TVSASSHQPVS------RMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPL 273 (588)
T ss_dssp CCCSSSSCCCE------EEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEE
T ss_pred ECCCCccccce------eeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEe
Confidence 99887742100 012 2688899999999 44 788887 699999993 34443444 99999999988
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=4.3e-24 Score=232.57 Aligned_cols=261 Identities=15% Similarity=0.105 Sum_probs=183.2
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEE-EEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~L-aTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
.+++|..++ +++|+....+.. . ..+...+..+++.++++++ ++++.|++|+|||+.+++.+..+.
T Consensus 33 ~la~g~~~~-~~iw~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~------ 98 (355)
T 3vu4_A 33 CLILSTLKS-FEIYNVHPVAHI-----M--SQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK------ 98 (355)
T ss_dssp EEEEECSSE-EEEEEETTEEEE-----E--EEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE------
T ss_pred EEEEEcCCE-EEEEecCCccee-----e--eeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE------
Confidence 456666664 689997643321 1 1222358889999988877 567788999999999988777652
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC--CceEEeccCCCCEEEEEecCCc
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGHLDDVLDLSWSKSQ 579 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~--k~i~~l~gH~~~V~~L~~spd~ 579 (755)
+...+..+.++++...++. ++.+ .+|++.. +.+..+.. ....+++++ .
T Consensus 99 ~~~~v~~v~~~~~~~~~~~---~~~i-----------------------~i~d~~~~~~~~~~~~~---~~~~~~~s~-~ 148 (355)
T 3vu4_A 99 VDAPVKDLFLSREFIVVSY---GDVI-----------------------SVFKFGNPWKRITDDIR---FGGVCEFSN-G 148 (355)
T ss_dssp CSSCEEEEEECSSEEEEEE---TTEE-----------------------EEEESSTTCCBSSCCEE---EEEEEEEET-T
T ss_pred CCCceEEEEEcCCEEEEEE---cCEE-----------------------EEEECCCCceeeEEecc---CCceEEEEc-c
Confidence 2346777888776544432 2223 2333322 23333333 333455566 5
Q ss_pred EEEE--EeCCCcEEEEECCCCc----------------EEEEee-cCCceEEEEEeeCCCcEEEEEECCCc-EEEEECCC
Q 004404 580 HLLS--SSMDKTVRLWHLSSKT----------------CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAK-VRIWSIPE 639 (755)
Q Consensus 580 ~LaS--gs~DgtVrLWDl~t~~----------------~~~~~~-h~~~VtsVafsP~dg~~LaSgS~Dgt-VrIWDl~t 639 (755)
+++. |+.||+|++||+.++. ++..+. |...|++++|+| ++++|++|+.|++ |+|||+++
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTT
T ss_pred EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCC
Confidence 6665 5889999999999865 145554 999999999999 9999999999999 99999999
Q ss_pred CcEEEecc---CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeecccccc-------------cccc-ccCCCCC
Q 004404 640 RQVVDWND---LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL-------------QNKK-KRSHQRK 702 (755)
Q Consensus 640 ~~~v~~~~---~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~-------------~~~~-~~~h~~~ 702 (755)
++++..+. |...|++++|+|+|++|++++.|+.|++||+..........+.. .... ...+...
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVR 307 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCC
Confidence 98886554 78899999999999999999999999999998764322111000 0000 0112233
Q ss_pred eEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 703 ITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 703 Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
...++|++++. +|++++.||.+++|+
T Consensus 308 ~~~~a~~~d~~-~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 308 GCKIAWISESS-LVVVWPHTRMIETFK 333 (355)
T ss_dssp CCEEEESSSSE-EEEEETTTTEEEEEE
T ss_pred ceEEEEeCCCC-EEEEEeCCCeEEEEE
Confidence 46789999997 899999999999998
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=1.7e-24 Score=239.10 Aligned_cols=225 Identities=15% Similarity=0.137 Sum_probs=158.5
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccccccccccc
Q 004404 462 IKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL 541 (755)
Q Consensus 462 I~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~ 541 (755)
..+.+++.+||+|+.|++|+|||+.+++....
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~------------------------------------------------ 126 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQ------------------------------------------------ 126 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEE------------------------------------------------
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCcccee------------------------------------------------
Confidence 33444667899999999999999876543221
Q ss_pred ccCcccccceeeecCCCceEEeccCCCCEEEEEecC--------C-cEEEEEeCCCcEEEEECCCCcEEEE-eecCCceE
Q 004404 542 SLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK--------S-QHLLSSSMDKTVRLWHLSSKTCLKI-FSHSDYVT 611 (755)
Q Consensus 542 s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp--------d-~~LaSgs~DgtVrLWDl~t~~~~~~-~~h~~~Vt 611 (755)
.++..+.+|.+.|++|+|+| + .+|++++.|++|+|||+.++.++.. +.|..+|.
T Consensus 127 ----------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~ 190 (393)
T 4gq1_A 127 ----------------HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI 190 (393)
T ss_dssp ----------------EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE
T ss_pred ----------------eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE
Confidence 12234678999999999987 3 6799999999999999988766554 46999999
Q ss_pred EEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe--------------------------ccCCCCEEEEEEc-cCCCEE
Q 004404 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW--------------------------NDLHEMVTAACYT-PDGQGA 664 (755)
Q Consensus 612 sVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~--------------------------~~~~~~VtsvafS-PdG~~L 664 (755)
+++|+|.+..+|++++.|++|++||+++++.... ..+...+.++.|+ |+|+.|
T Consensus 191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 9999993346899999999999999988754311 2344577888887 799999
Q ss_pred EEEECCCcEEEEECCCCeeeecccccc----------ccccccCCCCCeEEEEEcc-CCCeEEEEEECCCcEEEEE--CC
Q 004404 665 LVGSYKGSCHLYNTSENKLQQKSPINL----------QNKKKRSHQRKITGFQFAP-GSSSEVLVTSADSRIRVVD--GI 731 (755)
Q Consensus 665 asGs~DG~I~lwDl~~~~~~~~~~i~~----------~~~~~~~h~~~Vtsl~fsP-dg~~~L~sgs~Dg~IrVWD--~~ 731 (755)
++++.|+.+++||+..+.....+.... ..+....+...+ ...|+| .+..++++|+.|++|+||| .+
T Consensus 271 ~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~ 349 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEK 349 (393)
T ss_dssp EEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCT
T ss_pred EEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCC
Confidence 999999999999998876554332100 001111222222 233444 3444667778899999999 47
Q ss_pred cceEEeecCCccEEEEEEEE
Q 004404 732 DLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 732 ~ll~~~~GH~~~V~sv~fs~ 751 (755)
+.+..+.+|...|.+++|.|
T Consensus 350 ~~~~~~~~~~~~V~svafsp 369 (393)
T 4gq1_A 350 DSNSIPIQLGMPIVDFCWHQ 369 (393)
T ss_dssp TCCEEEEECSSCEEEEEECT
T ss_pred cEEEEecCCCCcEEEEEEcC
Confidence 78888899999999999864
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=1.5e-22 Score=220.65 Aligned_cols=270 Identities=10% Similarity=0.078 Sum_probs=205.6
Q ss_pred cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCC
Q 004404 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (755)
Q Consensus 351 ~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~d 430 (755)
+++++.|++|+ +|+..+++....+. .+ ..+..+ ....++..+++++..+
T Consensus 5 ~vs~~~d~~v~-v~d~~~~~~~~~~~-~~-~~~~~~----------------------------~~s~dg~~l~~~~~~d 53 (391)
T 1l0q_A 5 YIANSESDNIS-VIDVTSNKVTATIP-VG-SNPMGA----------------------------VISPDGTKVYVANAHS 53 (391)
T ss_dssp EEEETTTTEEE-EEETTTTEEEEEEE-CS-SSEEEE----------------------------EECTTSSEEEEEEGGG
T ss_pred EEEcCCCCEEE-EEECCCCeEEEEee-cC-CCcceE----------------------------EECCCCCEEEEECCCC
Confidence 56788999999 99998776544433 11 112222 3334444556778889
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEE-ECCCcEEEEeCcCCceeeeeecccccCccccEEEe
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTg-s~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v 509 (755)
+.|++|+..+++.. +.+..|. .|.+++|+|++++|+.+ +.++.|++||+.+++....+. ....+..+
T Consensus 54 ~~i~v~d~~~~~~~-----~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~------~~~~~~~~ 121 (391)
T 1l0q_A 54 NDVSIIDTATNNVI-----ATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK------TGKSPLGL 121 (391)
T ss_dssp TEEEEEETTTTEEE-----EEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE------CSSSEEEE
T ss_pred CeEEEEECCCCeEE-----EEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe------CCCCcceE
Confidence 99999999866543 3344444 89999999999987655 467999999999887766542 12346788
Q ss_pred ecCCCCcee-ccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEE-EEEe
Q 004404 510 NGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHL-LSSS 585 (755)
Q Consensus 510 ~~s~dg~~l-~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~L-aSgs 585 (755)
.+++++..+ +++..++.+ .+|++ +++.+..+..| ..+.+++|+|+ .+| ++++
T Consensus 122 ~~s~dg~~l~~~~~~~~~v-----------------------~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~ 177 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGDKTV-----------------------SVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF 177 (391)
T ss_dssp EECTTSSEEEEEETTTTEE-----------------------EEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET
T ss_pred EECCCCCEEEEEeCCCCEE-----------------------EEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC
Confidence 999998866 565555555 34443 33455555555 45799999998 455 6778
Q ss_pred CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEE---CCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCC
Q 004404 586 MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS---LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQ 662 (755)
Q Consensus 586 ~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS---~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~ 662 (755)
.++.|++||+.+++++..+.+...+.+++|+| ++++|++++ .++.|++||+.+++++.....+..+.+++|+|+|+
T Consensus 178 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 256 (391)
T 1l0q_A 178 DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK 256 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSS
T ss_pred CCCEEEEEECCCCeEEEEEecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCC
Confidence 89999999999999999998888999999999 898888887 68999999999998887777777899999999999
Q ss_pred EE-EEEECCCcEEEEECCCCeeeeccc
Q 004404 663 GA-LVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 663 ~L-asGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
+| ++++.|+.|++||+.+++....+.
T Consensus 257 ~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 257 KVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 88 556789999999999998876654
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=5.1e-23 Score=227.64 Aligned_cols=285 Identities=10% Similarity=0.039 Sum_probs=222.6
Q ss_pred EeCCCc--EEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCcc
Q 004404 426 HGQERV--RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (755)
Q Consensus 426 sg~~dg--~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~ 503 (755)
.+..++ .|+.|+...+.+ .....+..| ..+.+++|+|++.++++++.|+.|++||+.+++....+......+|.
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITH---RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSE---EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred cccCCCceEEEEECCCCCcc---eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 455555 555555443322 223344444 44669999998888888889999999999988776544332335677
Q ss_pred ccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC-cEE
Q 004404 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHL 581 (755)
Q Consensus 504 ~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd-~~L 581 (755)
..+..+.+++++.+++++..++.+ .+|+. .++.+..+..|...+.+++|+|+ .++
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v-----------------------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAV-----------------------HVFDLKTLAYKATVDLTGKWSKILLYDPIRDLV 226 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEE-----------------------EEEETTTCCEEEEEECSSSSEEEEEEETTTTEE
T ss_pred CceeEEEEcCCCEEEEEECCCCEE-----------------------EEEECCCceEEEEEcCCCCCeeEEEEcCCCCEE
Confidence 788899999999999888777766 34444 34667778889999999999998 555
Q ss_pred -EEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEE--------CCCcEEEEECCCCcEEEeccCCCCE
Q 004404 582 -LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS--------LDAKVRIWSIPERQVVDWNDLHEMV 652 (755)
Q Consensus 582 -aSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS--------~DgtVrIWDl~t~~~v~~~~~~~~V 652 (755)
++++.|+.|++||+.+++.+..+.+...+.+++|+| ++++|++++ .|+.|++||+.+++.+....+...+
T Consensus 227 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 305 (433)
T 3bws_A 227 YCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK 305 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE
T ss_pred EEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc
Confidence 455589999999999999998888777899999999 898998888 5899999999999888777777789
Q ss_pred EEEEEccCCCEE-EEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC----------
Q 004404 653 TAACYTPDGQGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA---------- 721 (755)
Q Consensus 653 tsvafSPdG~~L-asGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~---------- 721 (755)
..++|+|+++.+ ++++.++.|++||+.+++....+ .+...+.+++|+|+++ +|++++.
T Consensus 306 ~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~----------~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~ 374 (433)
T 3bws_A 306 RHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI----------PVFDKPNTIALSPDGK-YLYVSCRGPNHPTEGYL 374 (433)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE----------ECSSSEEEEEECTTSS-EEEEEECCCCCTTTCTT
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe----------cCCCCCCeEEEcCCCC-EEEEEecCCCccccccc
Confidence 999999999765 55688999999999988876543 3567799999999998 6777765
Q ss_pred -----CCcEEEEE--CCcceEEeecCCccEEEEEEE
Q 004404 722 -----DSRIRVVD--GIDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 722 -----Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs 750 (755)
||.|++|| .++++..+.++ ..+..++|.
T Consensus 375 ~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s 409 (433)
T 3bws_A 375 KKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVS 409 (433)
T ss_dssp SCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEEC
T ss_pred cccccceEEEEEECCCCcEEEEecCC-CCCceEEEc
Confidence 57999999 57788888774 467777774
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=1.3e-23 Score=228.73 Aligned_cols=233 Identities=9% Similarity=0.079 Sum_probs=172.8
Q ss_pred eEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCcee-ccccCCCcee
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSL-SPKHLDNHLE 528 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l-~~~s~d~~i~ 528 (755)
+++.+|.+.|++|+|+|||++||+|+.++ ++||++.+.+...... .. .+..+.+.+....+ +++..++.+
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~d~~v- 83 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE----MR---HLSKVRMLHRTNYVAFVTGVKEVV- 83 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE----CS---CCCEEEECTTSSEEEEECSSTTEE-
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee----cC---CeEEEEEcCCCCEEEEEECCccEE-
Confidence 44578999999999999999999998775 7899987765443321 11 23344455554444 334344444
Q ss_pred eecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCC-cEEEEeec
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSK-TCLKIFSH 606 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~-~~~~~~~h 606 (755)
.+|+. +++++..+. |...|.+++|+++..+++ .|+.|++||+.++ +.+..+..
T Consensus 84 ----------------------~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 84 ----------------------HIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp ----------------------EEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCCBSSCCEE
T ss_pred ----------------------EEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCceeeEEecc
Confidence 45554 455666665 667899999998764443 4789999999988 66665554
Q ss_pred CCceEEEEEeeCCCcEEEE--EECCCcEEEEECCCCc-----------------EEEeccCCCCEEEEEEccCCCEEEEE
Q 004404 607 SDYVTCIQFNPVDDRYFIS--GSLDAKVRIWSIPERQ-----------------VVDWNDLHEMVTAACYTPDGQGALVG 667 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaS--gS~DgtVrIWDl~t~~-----------------~v~~~~~~~~VtsvafSPdG~~LasG 667 (755)
+...+++++ .+++. |+.||+|++||+.++. ...+..|...|++++|+|+|++|++|
T Consensus 139 --~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 139 --FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp --EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred --CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 555667776 55555 6899999999999865 45667788999999999999999999
Q ss_pred ECCCc-EEEEECCCCeeeeccccccccccccC-CCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 668 SYKGS-CHLYNTSENKLQQKSPINLQNKKKRS-HQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 668 s~DG~-I~lwDl~~~~~~~~~~i~~~~~~~~~-h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+.|++ |++||+.+++.+..+. .+ |...|++++|+|++. +|++++.|++|+|||.
T Consensus 214 s~d~~~v~iwd~~~~~~~~~~~--------~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDGVLVREFR--------RGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEI 269 (355)
T ss_dssp ETTCSEEEEEETTTCCEEEEEE--------CTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEES
T ss_pred eCCCCEEEEEECCCCcEEEEEE--------cCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEc
Confidence 99998 9999999998876542 14 899999999999998 8999999999999994
No 124
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=2e-23 Score=232.96 Aligned_cols=242 Identities=18% Similarity=0.257 Sum_probs=190.6
Q ss_pred CcEEEEeCCCcEEEEeeCCCCccc-----ceeeeeEeecccCCEEEEEEcCCCC-EEEEEECCCcEEEEeCcCCceeeee
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLT-----ALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGEL 494 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~-----~~~~~q~l~gH~~~I~sI~fSpdg~-~LaTgs~DGtVrVWdl~t~~~~~~l 494 (755)
..++++++.++.|++|+....... .......+.+|...|++|+|+|++. +|++|+.||+|+||++.+.......
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 220 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 220 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence 456788999999999998752110 1334456789999999999999998 9999999999999999874332111
Q ss_pred e--cccccCccccEEEeecCC-CCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEE
Q 004404 495 L--EKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571 (755)
Q Consensus 495 ~--~~~~~~~~~~v~~v~~s~-dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~ 571 (755)
. .....+|...+..+.|+| ++.+++++..++.+.++...... ..+++..+..|...|+
T Consensus 221 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-------------------TSKPSHTVDAHTAEVN 281 (430)
T ss_dssp EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-------------------SSSCSEEEECCSSCEE
T ss_pred eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-------------------CCcceeEeecCCCCeE
Confidence 1 112346778899999999 67888888888877433322100 1246677889999999
Q ss_pred EEEecCC--cEEEEEeCCCcEEEEECCC-CcEEEEee-cCCceEEEEEeeCCC-cEEEEEECCCcEEEEECCC-------
Q 004404 572 DLSWSKS--QHLLSSSMDKTVRLWHLSS-KTCLKIFS-HSDYVTCIQFNPVDD-RYFISGSLDAKVRIWSIPE------- 639 (755)
Q Consensus 572 ~L~~spd--~~LaSgs~DgtVrLWDl~t-~~~~~~~~-h~~~VtsVafsP~dg-~~LaSgS~DgtVrIWDl~t------- 639 (755)
+|+|+|+ ..|++|+.|++|++||++. ..++..+. |...|++++|+| ++ .+|++++.|++|+|||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS-SCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC-CCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 9999997 3699999999999999997 56677776 999999999999 66 5799999999999999987
Q ss_pred -------CcEE-EeccCCCCEEEEEEccCCC-EEEEEECCCcEEEEECCCCe
Q 004404 640 -------RQVV-DWNDLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENK 682 (755)
Q Consensus 640 -------~~~v-~~~~~~~~VtsvafSPdG~-~LasGs~DG~I~lwDl~~~~ 682 (755)
.+++ ....|...|++++|+|+++ +|++++.||.|+||++....
T Consensus 361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 361 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 2444 4445667899999999999 89999999999999997643
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-23 Score=251.15 Aligned_cols=229 Identities=16% Similarity=0.276 Sum_probs=188.2
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC--CCEEEEEECCCcEEEEeCcCCc--eeeeeeccc
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQVVESE--RKGELLEKQ 498 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd--g~~LaTgs~DGtVrVWdl~t~~--~~~~l~~~~ 498 (755)
.+++|+.++.|++|+...+. ......+.+|.++|++|+|+|+ +++|++|+.||+|++||+.+++ ....
T Consensus 23 ~latg~~dg~I~vwd~~~~~---~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~----- 94 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV----- 94 (753)
T ss_dssp CEEEEETTTEEEEEEEETTE---EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE-----
T ss_pred eEEEEECCCcEEEEecCCCC---CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc-----
Confidence 46788899999999986432 2344567899999999999988 9999999999999999998875 2222
Q ss_pred ccCccccEEEeecCCC--CceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec
Q 004404 499 EDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~d--g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
..+|...+..+.++|+ +..++++..++.+..+..... .......+.+|...|.+++|+
T Consensus 95 ~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~--------------------~~~~~~~~~~~~~~v~~l~~~ 154 (753)
T 3jro_A 95 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN--------------------GTTSPIIIDAHAIGVNSASWA 154 (753)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS--------------------SCCCCEEEECCSSCEEEEEEC
T ss_pred ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC--------------------CCcceeEeecCCCceEEEEec
Confidence 2567889999999999 999999988888744332211 112445678899999999999
Q ss_pred C-------------C-cEEEEEeCCCcEEEEECCCC----cEEEEee-cCCceEEEEEeeCC---CcEEEEEECCCcEEE
Q 004404 577 K-------------S-QHLLSSSMDKTVRLWHLSSK----TCLKIFS-HSDYVTCIQFNPVD---DRYFISGSLDAKVRI 634 (755)
Q Consensus 577 p-------------d-~~LaSgs~DgtVrLWDl~t~----~~~~~~~-h~~~VtsVafsP~d---g~~LaSgS~DgtVrI 634 (755)
| + ..|++|+.||+|++||+.++ .+...+. |...|++++|+| + +.+|++++.||+|++
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEESSSCEEE
T ss_pred CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc-CCCCCCEEEEEecCCEEEE
Confidence 9 3 67999999999999999876 4455554 999999999999 7 899999999999999
Q ss_pred EECCCCc------EEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 004404 635 WSIPERQ------VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (755)
Q Consensus 635 WDl~t~~------~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~ 680 (755)
||+.++. ......+...|++++|+|+|++|++|+.||.|++|++..
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9998863 223334667899999999999999999999999999985
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=1.8e-22 Score=225.04 Aligned_cols=276 Identities=11% Similarity=0.013 Sum_probs=214.3
Q ss_pred EEEEeeC--CCCcccceeeeeEeecccCCEEEEEEcC--------------CCCEEEEEECC------CcEEEEeCcCCc
Q 004404 432 RVRQYGK--SCKDLTALYKCQEIQAHNGSIWSIKFSL--------------DGRYLASAGED------CVIHVWQVVESE 489 (755)
Q Consensus 432 ~Vriwd~--~~~~~~~~~~~q~l~gH~~~I~sI~fSp--------------dg~~LaTgs~D------GtVrVWdl~t~~ 489 (755)
.|++||. .+++. .....+.+|...+..+++++ .+..|+.++.+ +.|++||+...
T Consensus 94 ~i~lwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~- 169 (415)
T 2hqs_A 94 AYQLVDTGGAPGTV---LAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY- 169 (415)
T ss_dssp EEEEEECSSSTTCE---EEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-
T ss_pred EEEEEeCCCCCCCE---EeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-
Confidence 9999999 76652 22245778998888888875 26667776654 79999999743
Q ss_pred eeeeeecccccCccccEEEeecCCCCceeccccCCC---ceeeecccccccccccccCcccccceeeecCCCceEEeccC
Q 004404 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566 (755)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~---~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH 566 (755)
....+ ..+...+..+.|+|++..++....+. .+ .+|++.......+..|
T Consensus 170 ~~~~l-----~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i-----------------------~~~d~~tg~~~~l~~~ 221 (415)
T 2hqs_A 170 NQFVV-----HRSPQPLMSPAWSPDGSKLAYVTFESGRSAL-----------------------VIQTLANGAVRQVASF 221 (415)
T ss_dssp SCEEE-----EEESSCEEEEEECTTSSEEEEEECTTSSCEE-----------------------EEEETTTCCEEEEECC
T ss_pred CCEEE-----eCCCCcceeeEEcCCCCEEEEEEecCCCcEE-----------------------EEEECCCCcEEEeecC
Confidence 33333 23456788999999999888775543 22 4556554455567788
Q ss_pred CCCEEEEEecCC-cEEE-EEeCCCc--EEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC-C--cEEEEECCC
Q 004404 567 LDDVLDLSWSKS-QHLL-SSSMDKT--VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-A--KVRIWSIPE 639 (755)
Q Consensus 567 ~~~V~~L~~spd-~~La-Sgs~Dgt--VrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D-g--tVrIWDl~t 639 (755)
...+.+++|+|+ .+|+ +++.++. |++||+.++++.....|...+.+++|+| ++++|++++.+ + .|.+||+.+
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTS
T ss_pred CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCC
Confidence 889999999999 4566 6666655 9999999988765556888999999999 99999988864 4 688889998
Q ss_pred CcEEEeccCCCCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEE
Q 004404 640 RQVVDWNDLHEMVTAACYTPDGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (755)
Q Consensus 640 ~~~v~~~~~~~~VtsvafSPdG~~LasGs~D---G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L 716 (755)
++...+..+...+..++|+|+|++|++++.+ ..|++||+.+++.... ..|. .+..++|+|+|+ +|
T Consensus 301 ~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l----------~~~~-~~~~~~~spdg~-~l 368 (415)
T 2hqs_A 301 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL----------SSTF-LDETPSLAPNGT-MV 368 (415)
T ss_dssp SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC----------CCSS-SCEEEEECTTSS-EE
T ss_pred CCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe----------cCCC-CcCCeEEcCCCC-EE
Confidence 8876666666789999999999999988764 5899999998876431 1343 899999999998 67
Q ss_pred EEEECCC---cEEEEE-CCcceEEeecCCccEEEEEEEEE
Q 004404 717 LVTSADS---RIRVVD-GIDLVHKFKGENYVQYMVCIVLF 752 (755)
Q Consensus 717 ~sgs~Dg---~IrVWD-~~~ll~~~~GH~~~V~sv~fs~F 752 (755)
++++.++ .|++|| .+..+..+.+|...|.+++|+|.
T Consensus 369 ~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 369 IYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred EEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccc
Confidence 7777766 799999 57788999999999999999874
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=2.6e-21 Score=215.54 Aligned_cols=237 Identities=13% Similarity=0.098 Sum_probs=184.8
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCC---cEEEEeCcCCceeeeeecccccCccccEE
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC---VIHVWQVVESERKGELLEKQEDGHLNMLL 507 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DG---tVrVWdl~t~~~~~~l~~~~~~~~~~~v~ 507 (755)
+.|++||...+. .+.+.+|...|.+++|+|||++||+++.++ .|++||+.+++... + ..+...+.
T Consensus 159 ~~i~i~d~~g~~------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l-----~~~~~~~~ 226 (415)
T 2hqs_A 159 YELRVSDYDGYN------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V-----ASFPRHNG 226 (415)
T ss_dssp EEEEEEETTSCS------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E-----ECCSSCEE
T ss_pred ceEEEEcCCCCC------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e-----ecCCCccc
Confidence 899999987433 245668999999999999999999999885 99999998876542 2 23345788
Q ss_pred EeecCCCCceec-cccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEe
Q 004404 508 LANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSS 585 (755)
Q Consensus 508 ~v~~s~dg~~l~-~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs 585 (755)
.+.|+|++..++ +...++... -.+|++.......+..|...+.+++|+|+ .+|++++
T Consensus 227 ~~~~spdg~~la~~~~~~g~~~---------------------i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s 285 (415)
T 2hqs_A 227 APAFSPDGSKLAFALSKTGSLN---------------------LYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS 285 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCE---------------------EEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred CEEEcCCCCEEEEEEecCCCce---------------------EEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEE
Confidence 999999998776 443332210 03455555556778889999999999999 5677777
Q ss_pred C-CC--cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC---CcEEEEECCCCcEEEeccCCCCEEEEEEcc
Q 004404 586 M-DK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD---AKVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (755)
Q Consensus 586 ~-Dg--tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D---gtVrIWDl~t~~~v~~~~~~~~VtsvafSP 659 (755)
. ++ .|++||+.+++......+...+.+++|+| ++++|++++.+ ..|++||+.++++..+..+. .+.+++|+|
T Consensus 286 ~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~sp 363 (415)
T 2hqs_A 286 DQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAP 363 (415)
T ss_dssp CTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECT
T ss_pred CCCCCcEEEEEECCCCCEEEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcC
Confidence 5 44 68888998887655445778899999999 99999888764 58999999999887655554 899999999
Q ss_pred CCCEEEEEECCC---cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 660 DGQGALVGSYKG---SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 660 dG~~LasGs~DG---~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
+|++|++++.++ .|++||+..+.... +..|.+.|.+++|+|.-
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~g~~~~~----------l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTDGRFKAR----------LPATDGQVKFPAWSPYL 409 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETTSCCEEE----------CCCSSSEEEEEEECCCC
T ss_pred CCCEEEEEEcCCCccEEEEEECCCCcEEE----------eeCCCCCCcCCcccccc
Confidence 999999988777 79999998654432 23788999999999964
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=2.1e-20 Score=215.91 Aligned_cols=326 Identities=12% Similarity=0.056 Sum_probs=223.3
Q ss_pred cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCC
Q 004404 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (755)
Q Consensus 351 ~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~d 430 (755)
+++++.|++|. +||..+++...++..++. +..++++++ + ..+++++.+
T Consensus 152 ~vs~~~d~~V~-v~D~~t~~~~~~i~~g~~--~~~v~~spd----------------------------g-~~l~v~~~d 199 (543)
T 1nir_A 152 SVTLRDAGQIA-LVDGDSKKIVKVIDTGYA--VHISRMSAS----------------------------G-RYLLVIGRD 199 (543)
T ss_dssp EEEEGGGTEEE-EEETTTCCEEEEEECSTT--EEEEEECTT----------------------------S-CEEEEEETT
T ss_pred EEEEcCCCeEE-EEECCCceEEEEEecCcc--cceEEECCC----------------------------C-CEEEEECCC
Confidence 67788899999 999988876655542221 333333332 2 345666677
Q ss_pred cEEEEeeC--CCCcccceeeeeEeecccCCEEEEEEcC----CCCEEEEEEC-CCcEEEEeCcCCceeeeeeccccc---
Q 004404 431 VRVRQYGK--SCKDLTALYKCQEIQAHNGSIWSIKFSL----DGRYLASAGE-DCVIHVWQVVESERKGELLEKQED--- 500 (755)
Q Consensus 431 g~Vriwd~--~~~~~~~~~~~q~l~gH~~~I~sI~fSp----dg~~LaTgs~-DGtVrVWdl~t~~~~~~l~~~~~~--- 500 (755)
+.|++||. .+.+ ...++. +...+..|+|+| ||++|++++. +++|.|||..+.+.+..+......
T Consensus 200 ~~V~v~D~~~~t~~-----~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 200 ARIDMIDLWAKEPT-----KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp SEEEEEETTSSSCE-----EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred CeEEEEECcCCCCc-----EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence 99999999 5433 234455 445689999999 9999999985 899999999998887766421110
Q ss_pred --Cc-cccEEEeecCCCCce-eccccCCCceeeecccccccccccccCcccccceeeecCC-Cce--EEeccCCCCEEEE
Q 004404 501 --GH-LNMLLLANGSPEPTS-LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPI--CSFQGHLDDVLDL 573 (755)
Q Consensus 501 --~~-~~~v~~v~~s~dg~~-l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~-k~i--~~l~gH~~~V~~L 573 (755)
.| ...+..+.+++++.. +++...++.+.. ++... +.+ ..+ .+...+.++
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~v-----------------------vd~~~~~~l~~~~i-~~~~~~~~~ 329 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL-----------------------VNYKDIDNLTVTSI-GAAPFLHDG 329 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEE-----------------------EECTTSSSCEEEEE-ECCSSCCCE
T ss_pred cccccCCceEEEEECCCCCEEEEEECCCCeEEE-----------------------EEecCCCcceeEEe-ccCcCccCc
Confidence 01 124667777886544 334334444422 22211 111 122 355668889
Q ss_pred EecCC-cEEEEE-eCCCcEEEEECCCCcEEEEee-----cCCceEEEEEeeCCCcEEEEEE-CCCcEEEEECCC------
Q 004404 574 SWSKS-QHLLSS-SMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPE------ 639 (755)
Q Consensus 574 ~~spd-~~LaSg-s~DgtVrLWDl~t~~~~~~~~-----h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWDl~t------ 639 (755)
.|+|+ .+|+++ ..+++|.+||+.+++++.++. |.+....+ ++|..+.+++++. .|++|.+||+.+
T Consensus 330 ~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~ 408 (543)
T 1nir_A 330 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 408 (543)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred eECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence 99999 455554 468999999999999998885 55444444 5773366777775 589999999988
Q ss_pred -CcEEEeccC-CCCEEEEEEccCCCEEEEEE-------CCCcEEEEECCCCeee-eccccccccccccCCCCCeEEEEEc
Q 004404 640 -RQVVDWNDL-HEMVTAACYTPDGQGALVGS-------YKGSCHLYNTSENKLQ-QKSPINLQNKKKRSHQRKITGFQFA 709 (755)
Q Consensus 640 -~~~v~~~~~-~~~VtsvafSPdG~~LasGs-------~DG~I~lwDl~~~~~~-~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (755)
.++++.+.. ...+..++++|+|++|++++ .+++|.+||+.+++.. ..+.+.. -..+..+...+..+.|+
T Consensus 409 ~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~ 487 (543)
T 1nir_A 409 AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE-WADLGEGAKRVVQPEYN 487 (543)
T ss_dssp BTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH-HHCCCSSCCEEEEEEEC
T ss_pred cCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh-hcccCCCCCceEeccCC
Confidence 777765554 45778999999999999987 2779999999998765 3221100 00123567889999999
Q ss_pred cCCCeEEEEEE-----CCCcEEEEE--CCcceEEeecCC
Q 004404 710 PGSSSEVLVTS-----ADSRIRVVD--GIDLVHKFKGEN 741 (755)
Q Consensus 710 Pdg~~~L~sgs-----~Dg~IrVWD--~~~ll~~~~GH~ 741 (755)
|+|+ .|+++. .|+.|.||| +++++++++.++
T Consensus 488 ~~g~-~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 488 KRGD-EVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp SSSS-EEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred CCCC-EEEEEeecCCCCCCeEEEEECCCceEEEeecCCC
Confidence 9999 455442 479999999 678888888654
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=5.7e-20 Score=189.77 Aligned_cols=255 Identities=12% Similarity=0.106 Sum_probs=183.9
Q ss_pred EeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcC-CceeeeeecccccCccc
Q 004404 426 HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLN 504 (755)
Q Consensus 426 sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t-~~~~~~l~~~~~~~~~~ 504 (755)
.+..++.|++|+..+++.. .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++..... ......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~----~~~~~~ 85 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD----TGFATI 85 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC----CTTCCC
T ss_pred CCCcceeEEEEeCCCCcee------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec----cccccc
Confidence 3467899999999876543 2446899999999999999999987 78999999988 6544332 111234
Q ss_pred cEEEeecCCCCceeccccCC--CceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEE
Q 004404 505 MLLLANGSPEPTSLSPKHLD--NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL 581 (755)
Q Consensus 505 ~v~~v~~s~dg~~l~~~s~d--~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~L 581 (755)
.+..+.|+|++..++..... ....+ ..+.........+..+. .+..++|+|+ .+|
T Consensus 86 ~~~~~~~spdg~~l~~~~~~~~~~~~l---------------------~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l 143 (297)
T 2ojh_A 86 CNNDHGISPDGALYAISDKVEFGKSAI---------------------YLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSF 143 (297)
T ss_dssp BCSCCEECTTSSEEEEEECTTTSSCEE---------------------EEEETTCCCCEECCSSS-SEEEEEECTTSSEE
T ss_pred cccceEECCCCCEEEEEEeCCCCcceE---------------------EEEECCCCceEEeecCC-CccceEECCCCCEE
Confidence 56678899999988876522 11111 11222333344444444 4899999998 455
Q ss_pred E-EEeCCCcEEEEEC--CCCcEEEEeecCCceEEEEEeeCCCcEEEEEE-CCCcEEEEECC--CCcEEEeccCCCCEEEE
Q 004404 582 L-SSSMDKTVRLWHL--SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIP--ERQVVDWNDLHEMVTAA 655 (755)
Q Consensus 582 a-Sgs~DgtVrLWDl--~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWDl~--t~~~v~~~~~~~~Vtsv 655 (755)
+ ++..++.++||++ .+++......+...+.+++|+| ++++|+.++ .++.++||++. .+....+..+...+..+
T Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 222 (297)
T 2ojh_A 144 TYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFP 222 (297)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEE
T ss_pred EEEECCCCceEEEEEECCCCcceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCe
Confidence 5 7888999999985 4455544445888999999999 888877766 58999999875 44555556666789999
Q ss_pred EEccCCCEEEEEECC-----------CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC
Q 004404 656 CYTPDGQGALVGSYK-----------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (755)
Q Consensus 656 afSPdG~~LasGs~D-----------G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D 722 (755)
+|+|+|++|++++.+ +.|++||+.+++...... ..+|...|..++|+|+++ +|++++.|
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~spdg~-~l~~~~~~ 292 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD-------LFGGQGTMNSPNWSPDGD-EFAYVRYF 292 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-------EEESTTTSCSCCBCTTSS-EEEEEEEC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-------cCCCCcccccceECCCCC-EEEEEEec
Confidence 999999999988765 569999999876543321 225778899999999998 66666554
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.85 E-value=1.3e-19 Score=195.11 Aligned_cols=263 Identities=16% Similarity=0.100 Sum_probs=174.6
Q ss_pred EEEEEEcCCCC---EEEEEECCCcEEEEeCcCC---ceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecc
Q 004404 459 IWSIKFSLDGR---YLASAGEDCVIHVWQVVES---ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (755)
Q Consensus 459 I~sI~fSpdg~---~LaTgs~DGtVrVWdl~t~---~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~ 532 (755)
+.+|-|-.-|- .++++++ .+|++|+..+. +....+ ..+..++..+.+.|+..-|+.-..+. + .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~-~----~ 110 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTW-----HFAEVPVLQIVPVPDVYNLVCVALGN-L----E 110 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEE-----ECCSSCEEEECCCTTCCSCEEEEECS-S----S
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEE-----eccCceeEEEEEcCcccceeeeeecc-c----c
Confidence 45555544332 6778876 58999999887 555554 56777888888888744333221111 0 0
Q ss_pred cccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEe---CCCcEEEEECC-CCcEEEEee-cC
Q 004404 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSS---MDKTVRLWHLS-SKTCLKIFS-HS 607 (755)
Q Consensus 533 ~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs---~DgtVrLWDl~-t~~~~~~~~-h~ 607 (755)
...+....++.+... .++...-.+|...|..+ +++.++.++ .|++|++|++. .++.+..+. |.
T Consensus 111 ~~~v~sla~spd~~~---------~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 111 IREIRALFCSSDDES---------EKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp EEEEEEECC---------------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred ccceEEEEECCCccc---------cccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 011122222222110 02222224455556554 567776665 49999999995 477777665 88
Q ss_pred CceEEEEEeeC--CCcEEEEEECCCcEEEEECCCCcEEEecc-CC---CCEEEEEEccCCCEE------------EEEEC
Q 004404 608 DYVTCIQFNPV--DDRYFISGSLDAKVRIWSIPERQVVDWND-LH---EMVTAACYTPDGQGA------------LVGSY 669 (755)
Q Consensus 608 ~~VtsVafsP~--dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-~~---~~VtsvafSPdG~~L------------asGs~ 669 (755)
..++.++|+|. ++.+|++++.|++|+|||+.+++++..+. ++ ..+.+++|+|+|+++ ++|+.
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 88888888884 56999999999999999999999886654 33 367788999999887 56788
Q ss_pred CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEE-E
Q 004404 670 KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQY-M 746 (755)
Q Consensus 670 DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~-s 746 (755)
|++|++||..+++.+..+.+.+ ..+|...+.+..++ +. ++++++.|++|+||| .++++++|++|...+. .
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~----p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~ 331 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCL----PPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSF 331 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECC----CTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCE
T ss_pred CcEEEEEECCCCEEEEEEEeec----cCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEE
Confidence 9999999999998876443221 13666666555554 55 799999999999999 6889999999998765 5
Q ss_pred EEEEE
Q 004404 747 VCIVL 751 (755)
Q Consensus 747 v~fs~ 751 (755)
++|+|
T Consensus 332 vafSP 336 (356)
T 2w18_A 332 VKWSG 336 (356)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 78876
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=6.4e-19 Score=187.39 Aligned_cols=286 Identities=10% Similarity=0.061 Sum_probs=191.6
Q ss_pred CCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC-CCcEEEEeCcCCce-eeeeec
Q 004404 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESER-KGELLE 496 (755)
Q Consensus 419 ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~-DGtVrVWdl~t~~~-~~~l~~ 496 (755)
++..++++...++.|++||..+++.... +..+...+ .++|+|+|++|++++. ++.|.+||+.+++. ...+.
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~-----~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~- 80 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDTLEILNQ-----ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ- 80 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTTCCEEEE-----EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-
T ss_pred CCCEEEEEecCCCeEEEEeCcccceeee-----EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-
Confidence 4455677888999999999987765433 33455666 9999999997777666 89999999988876 33331
Q ss_pred ccccCccccEEEeecCCCCceeccccCCC---ceeeecccccccccccccCcccccceeeecC-CCceEEeccCCCCEEE
Q 004404 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLD 572 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~dg~~l~~~s~d~---~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~~V~~ 572 (755)
.+..+...+.++|++..+++....+ .+ .+|+.. ++.+..+.. ...+.+
T Consensus 81 ----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i-----------------------~v~d~~~~~~~~~~~~-~~~~~~ 132 (331)
T 3u4y_A 81 ----EGQSSMADVDITPDDQFAVTVTGLNHPFNM-----------------------QSYSFLKNKFISTIPI-PYDAVG 132 (331)
T ss_dssp ----ECSSCCCCEEECTTSSEEEECCCSSSSCEE-----------------------EEEETTTTEEEEEEEC-CTTEEE
T ss_pred ----cCCCCccceEECCCCCEEEEecCCCCcccE-----------------------EEEECCCCCeEEEEEC-CCCccc
Confidence 1223333378899998777544332 33 334433 333444443 345789
Q ss_pred EEecCCc--EEEEEeCCCc-EEEEECCCCcEE-----EEeecCCceEEEEEeeCCCcEEEE-EECCCcEEEEECCCCcE-
Q 004404 573 LSWSKSQ--HLLSSSMDKT-VRLWHLSSKTCL-----KIFSHSDYVTCIQFNPVDDRYFIS-GSLDAKVRIWSIPERQV- 642 (755)
Q Consensus 573 L~~spd~--~LaSgs~Dgt-VrLWDl~t~~~~-----~~~~h~~~VtsVafsP~dg~~LaS-gS~DgtVrIWDl~t~~~- 642 (755)
++|+|++ .+++...++. |++|++.....+ ..+.....+..++|+| ++++++. +..++.|++||+.+++.
T Consensus 133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENI 211 (331)
T ss_dssp EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCccc
Confidence 9999994 3445566688 999998764332 2334556789999999 8885554 55689999999999887
Q ss_pred --EEeccCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 643 --VDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 643 --v~~~~~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
+........+..++|+|+|++|+++. .++.|.+||+.+++......+.............+..++|+|+++.+++++
T Consensus 212 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 291 (331)
T 3u4y_A 212 TLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291 (331)
T ss_dssp EEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred ceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence 66666677889999999999887765 477899999999887322111100000001112236689999998434445
Q ss_pred ECCCcEEEEEC-CcceEEeecC
Q 004404 720 SADSRIRVVDG-IDLVHKFKGE 740 (755)
Q Consensus 720 s~Dg~IrVWD~-~~ll~~~~GH 740 (755)
..++.|+|||. ...+..+.++
T Consensus 292 ~~~~~v~v~d~~~~~~~~~~~~ 313 (331)
T 3u4y_A 292 NISRELKVFTISGKVVGYVAGI 313 (331)
T ss_dssp TTTTEEEEEETTSCEEEECTTC
T ss_pred CCCCcEEEEEecCCcccceecc
Confidence 55779999994 3334444333
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=3.4e-20 Score=229.91 Aligned_cols=372 Identities=11% Similarity=0.003 Sum_probs=249.7
Q ss_pred eeeecCCceecHHHHHHhcCCcHHHHHHHhhcc---cccCCC------CCccccccCCCCCCccccccCCccccc-----
Q 004404 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN---VEEGNK------DSFDLNNNGSSGGGMKSKKKGSWFKSI----- 383 (755)
Q Consensus 318 l~d~~tg~~lt~~e~~~~~GHs~~V~~l~~~~~---~~sgs~------D~tv~~~Wd~~~g~~~~k~k~~~~~~v----- 383 (755)
++++.+|+.. .+.+|...|..++|+|+ ++.++. +.+|. +|+..+|. ..++. .|...+
T Consensus 37 ~~~~~gg~~~------~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~-~~d~~~g~-~~~lt-~~~~~~~~~~~ 107 (1045)
T 1k32_A 37 EHDLKSGSTR------KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLY-FYNGENGE-IKRIT-YFSGKSTGRRM 107 (1045)
T ss_dssp EEETTTCCEE------EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEE-EEETTTTE-EEECC-CCCEEEETTEE
T ss_pred EEECCCCcEE------EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEE-EEECCCCC-eEEcc-cCCCccccccc
Confidence 5566666543 45788888999999998 565543 34788 89987765 33444 455555
Q ss_pred --ceeEEeeccccccccCc---------cccCCc--------cCCCceeeeeecCCCcEEEEeCC------------CcE
Q 004404 384 --RTVASSVTGHKERRSSD---------ERDTSS--------EKGGRRSSSATDDSQDVSFHGQE------------RVR 432 (755)
Q Consensus 384 --~sv~~s~~g~~~~~~~~---------~~~~~~--------~~g~~~~vs~~~ds~~~l~sg~~------------dg~ 432 (755)
..++++++|........ .|.+.. ..+....+..++ + +++.+.. +..
T Consensus 108 ~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp-G--~l~~~~~~~~~~~~~~~~g~~~ 184 (1045)
T 1k32_A 108 FTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD-G--RRVIGRNTFELPHWKGYRGGTR 184 (1045)
T ss_dssp CSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET-T--EEEEEESCSCCTTSTTCCSTTC
T ss_pred ccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC-C--EEEEeccCCCccccccccCCCc
Confidence 77888888753211111 111100 001111122222 2 4444321 122
Q ss_pred EEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcC-CceeeeeecccccCccccEEEeec
Q 004404 433 VRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANG 511 (755)
Q Consensus 433 Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t-~~~~~~l~~~~~~~~~~~v~~v~~ 511 (755)
.++|....+ ...+.+.+|.+.+.++.|+++ .++++++.|++++||.+.. +.....+. .+. .+....+
T Consensus 185 ~~lw~~~~~-----~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~-----~~~-~~~~~~~ 252 (1045)
T 1k32_A 185 GKIWIEVNS-----GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT-----SFT-DYYPRHL 252 (1045)
T ss_dssp CEEEEEEET-----TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC-----CCC-SSCEEEE
T ss_pred CCEEEECCC-----CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec-----CCC-CcceeeE
Confidence 333322111 122345789999999999998 6778888899999998754 22222221 111 2334578
Q ss_pred CCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEec-----------cCCCCEEEEEec-CCc
Q 004404 512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-----------GHLDDVLDLSWS-KSQ 579 (755)
Q Consensus 512 s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~-----------gH~~~V~~L~~s-pd~ 579 (755)
+|++..++... ++.+..+.. ..+.+..+. .|...|..++|+ |++
T Consensus 253 SpDG~~la~~~-~~~i~~~d~-----------------------~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG 308 (1045)
T 1k32_A 253 NTDGRRILFSK-GGSIYIFNP-----------------------DTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG 308 (1045)
T ss_dssp EESSSCEEEEE-TTEEEEECT-----------------------TTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG
T ss_pred cCCCCEEEEEe-CCEEEEecC-----------------------CceEeeeeccCcccccccccccccccceeeecCCCC
Confidence 89988777753 333322221 111222222 355678999999 994
Q ss_pred -EEEEEeCCCcEEEEECCCCcEEEEeecCC-ceEEEEEeeCCCcEEEEEECCCcEE-EEECCCCcEEEeccCCCCEEEEE
Q 004404 580 -HLLSSSMDKTVRLWHLSSKTCLKIFSHSD-YVTCIQFNPVDDRYFISGSLDAKVR-IWSIPERQVVDWNDLHEMVTAAC 656 (755)
Q Consensus 580 -~LaSgs~DgtVrLWDl~t~~~~~~~~h~~-~VtsVafsP~dg~~LaSgS~DgtVr-IWDl~t~~~v~~~~~~~~Vtsva 656 (755)
+|++++ ++.|++|++..+.......|.. .+..++|+ +++.|+.++.+..|. +|++.+++...+..+...+..++
T Consensus 309 ~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~ 385 (1045)
T 1k32_A 309 DLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMG 385 (1045)
T ss_dssp GCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEE
T ss_pred CEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeE
Confidence 566666 8899999999887666545777 89999999 788899999888899 99999888777666667899999
Q ss_pred EccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC----------CcEE
Q 004404 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD----------SRIR 726 (755)
Q Consensus 657 fSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D----------g~Ir 726 (755)
|+|||++|++++.++.|++||+.+++..... ..|...|..++|+|+|+ +|++++.+ +.|+
T Consensus 386 ~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~---------~~~~~~v~~~~~SpDG~-~la~~~~~~~~~~~~~~~~~i~ 455 (1045)
T 1k32_A 386 VDRNGKFAVVANDRFEIMTVDLETGKPTVIE---------RSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIH 455 (1045)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEE---------ECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEE
T ss_pred ECCCCCEEEEECCCCeEEEEECCCCceEEec---------cCCCCCccceEECCCCC-eEEEEecCccccccCCCCCeEE
Confidence 9999999999999999999999998776542 26888899999999998 67777654 4899
Q ss_pred EEEC-CcceEEeecCCccEEEEEEE
Q 004404 727 VVDG-IDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 727 VWD~-~~ll~~~~GH~~~V~sv~fs 750 (755)
+||. ...+..+..|...+..++|+
T Consensus 456 l~d~~~g~~~~l~~~~~~~~~~~~s 480 (1045)
T 1k32_A 456 VYDMEGRKIFAATTENSHDYAPAFD 480 (1045)
T ss_dssp EEETTTTEEEECSCSSSBEEEEEEC
T ss_pred EEECCCCcEEEeeCCCcccCCceEc
Confidence 9993 22377788888888887775
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.83 E-value=1.2e-18 Score=201.32 Aligned_cols=281 Identities=15% Similarity=0.119 Sum_probs=203.2
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEee-cccCCEEEEEEcCCCCEEEEEECCCcEEEEeC--cCCceeeeeeccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV--VESERKGELLEKQ 498 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~-gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl--~t~~~~~~l~~~~ 498 (755)
.+++++..++.|.+||..+++.. +.+. +|. +..++|+|||++|++++.|++|++||+ .+++.+.++..
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~-----~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-- 220 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIV-----KVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-- 220 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEE-----EEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--
T ss_pred EEEEEEcCCCeEEEEECCCceEE-----EEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec--
Confidence 45678889999999999876653 3444 443 899999999999999999999999999 77776666531
Q ss_pred ccCccccEEEeecCC----CCceeccccC-CCceeeecccccccccccccCcccccceeeec-CCCceEEecc-------
Q 004404 499 EDGHLNMLLLANGSP----EPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG------- 565 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~----dg~~l~~~s~-d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~g------- 565 (755)
......++++| ++..++++.. +..+. +|+. +.+++..+..
T Consensus 221 ----g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~-----------------------v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 221 ----GIEARSVESSKFKGYEDRYTIAGAYWPPQFA-----------------------IMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp ----CSEEEEEEECCSTTCTTTEEEEEEEESSEEE-----------------------EEETTTCCEEEEEECCEECSSS
T ss_pred ----CCCcceEEeCCCcCCCCCEEEEEEccCCeEE-----------------------EEeccccccceeecccCcccCc
Confidence 23457788999 9988877653 44442 2221 3344444433
Q ss_pred ---CC-CCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEE--EeecCCceEEEEEeeCCCcEEEEEE-CCCcEEEEE
Q 004404 566 ---HL-DDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLK--IFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWS 636 (755)
Q Consensus 566 ---H~-~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~--~~~h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWD 636 (755)
|. ..+..+.++|+ ..+++...+++|.+||+.+.+.+. .+.+...+..+.|+| ++++|++++ .+++|.+||
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEE
T ss_pred cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC-CCCEEEEEecCCCeEEEEE
Confidence 22 37899999996 456777889999999998866544 556777889999999 899776554 589999999
Q ss_pred CCCCcEEEecc-----CCCCEEEEEEccC-CCEEEEEE-CCCcEEEEECCC-------CeeeeccccccccccccCCCCC
Q 004404 637 IPERQVVDWND-----LHEMVTAACYTPD-GQGALVGS-YKGSCHLYNTSE-------NKLQQKSPINLQNKKKRSHQRK 702 (755)
Q Consensus 637 l~t~~~v~~~~-----~~~~VtsvafSPd-G~~LasGs-~DG~I~lwDl~~-------~~~~~~~~i~~~~~~~~~h~~~ 702 (755)
+.+++++.... |......+ ++|+ |+.++++. .+++|.+||+.+ .+.+.+ +..|...
T Consensus 353 ~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~---------l~~~g~~ 422 (543)
T 1nir_A 353 SKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE---------LQGQGGG 422 (543)
T ss_dssp TTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE---------EECSCSC
T ss_pred CCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE---------EEcCCCC
Confidence 99999886554 33333333 5787 56666665 589999999988 555544 3367788
Q ss_pred eEEEEEccCCCeEEEEEE-------CCCcEEEEE--CCcce-EEe--------ecCCccEEEEEEE
Q 004404 703 ITGFQFAPGSSSEVLVTS-------ADSRIRVVD--GIDLV-HKF--------KGENYVQYMVCIV 750 (755)
Q Consensus 703 Vtsl~fsPdg~~~L~sgs-------~Dg~IrVWD--~~~ll-~~~--------~GH~~~V~sv~fs 750 (755)
+..++|+|+++ +|++++ .+++|.||| +.+.+ ..+ ..+...+..+.|.
T Consensus 423 ~~~v~~~pdg~-~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 487 (543)
T 1nir_A 423 SLFIKTHPKSS-HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN 487 (543)
T ss_dssp CCCEECCTTCC-EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEEC
T ss_pred ceEEEcCCCCC-cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCC
Confidence 89999999998 788776 278999999 34554 443 2444556666654
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.83 E-value=3.8e-18 Score=181.06 Aligned_cols=287 Identities=13% Similarity=0.163 Sum_probs=185.5
Q ss_pred EEEeCCCcEEEEeeCCC-CcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECC-CcEEEEeCc--CCcee--eeeecc
Q 004404 424 SFHGQERVRVRQYGKSC-KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-CVIHVWQVV--ESERK--GELLEK 497 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~~-~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~D-GtVrVWdl~--t~~~~--~~l~~~ 497 (755)
++++..++.|++|++.. +... ..+. ..|...+.+++|+|+|++|++++.+ +.|++|++. +++.. ..+.
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-- 81 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALT---LTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-- 81 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEE---EEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--
T ss_pred EEeCCCCCeEEEEEECCCCcEE---Eeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc--
Confidence 44557899999999853 2222 1222 3477889999999999999999887 999999997 43322 2221
Q ss_pred cccCccccEEEeecCCCCceecccc-CCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec
Q 004404 498 QEDGHLNMLLLANGSPEPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~dg~~l~~~s-~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
. . ..+..+.++|++..++... .++.+..+.... . ...+.+..+..+ ..+.+++|+
T Consensus 82 --~-~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~----------~---------~~~~~~~~~~~~-~~~~~~~~s 137 (343)
T 1ri6_A 82 --L-P-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLED----------G---------LPVGVVDVVEGL-DGCHSANIS 137 (343)
T ss_dssp --C-S-SCCSEEEECTTSSEEEEEETTTTEEEEEEEET----------T---------EEEEEEEEECCC-TTBCCCEEC
T ss_pred --c-C-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCC----------C---------ccccccccccCC-CCceEEEEC
Confidence 1 1 1456778899988665543 344443222100 0 011233334433 358899999
Q ss_pred CC-cEEEEEe-CCCcEEEEECCC-CcEEE----Eee--cCCceEEEEEeeCCCcEEEEEE-CCCcEEEEECCC--CcE--
Q 004404 577 KS-QHLLSSS-MDKTVRLWHLSS-KTCLK----IFS--HSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPE--RQV-- 642 (755)
Q Consensus 577 pd-~~LaSgs-~DgtVrLWDl~t-~~~~~----~~~--h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWDl~t--~~~-- 642 (755)
|+ .+|++++ .++.|++||+.+ ++... .+. ....+..++|+| ++++|++++ .++.|.+|++.. ++.
T Consensus 138 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 138 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred CCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence 98 5677776 899999999987 65433 222 455789999999 888765554 789999999953 433
Q ss_pred EE-ec--cC----CCCEEEEEEccCCCEEEEEE-CCCcEEEEECC--CCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 643 VD-WN--DL----HEMVTAACYTPDGQGALVGS-YKGSCHLYNTS--ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 643 v~-~~--~~----~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~--~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
.. .. .. ...+..++|+|+|++|+++. .++.|++||+. ++....... ...+. .+..++|+|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~-------~~~~~-~~~~~~~s~dg 288 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF-------QPTET-QPRGFNVDHSG 288 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE-------EECSS-SCCCEEECTTS
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee-------ecCCC-ccceEEECCCC
Confidence 11 11 11 23677899999999888655 78999999998 333222111 11233 38899999999
Q ss_pred CeEEEEEE-CCCcEEEEE----CC--cceEEeecCCccEEEEEEEE
Q 004404 713 SSEVLVTS-ADSRIRVVD----GI--DLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 713 ~~~L~sgs-~Dg~IrVWD----~~--~ll~~~~GH~~~V~sv~fs~ 751 (755)
+ +|++++ .++.|.||+ ++ +.+..+... .....++|.+
T Consensus 289 ~-~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~ 332 (343)
T 1ri6_A 289 K-YLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNA 332 (343)
T ss_dssp S-EEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEE
T ss_pred C-EEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEc
Confidence 8 666666 689999995 23 344455543 3345555544
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=3.8e-19 Score=188.25 Aligned_cols=277 Identities=11% Similarity=0.107 Sum_probs=191.8
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEee-cccC-CEEEEEEcCCCCEE-EEEECCCcEEEEeCcCCceeeeeeccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNG-SIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQ 498 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~-gH~~-~I~sI~fSpdg~~L-aTgs~DGtVrVWdl~t~~~~~~l~~~~ 498 (755)
.+++++..++.|++||..+++.... +. ++.. .+..++|+|+|++| +++..++.|.+||+.+++....+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~ 76 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKV-----ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEE-----EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEE-----EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC
Confidence 3577888999999999986654322 22 2322 47899999999865 455567899999999888766553211
Q ss_pred ccCccccEEEeecCCCCceeccccC------------CCceeeecccccccccccccCcccccceeeecC-CCceEEecc
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPKHL------------DNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQG 565 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~s~------------d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~g 565 (755)
...+...+..+.++|++..++.+.. ++.+ .+|+.. ++.+..+..
T Consensus 77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i-----------------------~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV-----------------------ALYDAETLSRRKAFEA 133 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEE-----------------------EEEETTTTEEEEEEEC
T ss_pred cccccccccceEECCCCCEEEEEecccccccccccccCceE-----------------------EEEECCCCcEEEEEeC
Confidence 1101113346778899877666531 1222 233333 233444443
Q ss_pred CCCCEEEEEecCCc-EEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC-C-------------
Q 004404 566 HLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-A------------- 630 (755)
Q Consensus 566 H~~~V~~L~~spd~-~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D-g------------- 630 (755)
...+.+++|+|++ +|+++ ++.|++||+.+++.+..+........+.|+| ++.+|+..... +
T Consensus 134 -~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~ 209 (337)
T 1pby_B 134 -PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQP-DVLAVWNQHESSGVMATPFYTARKDI 209 (337)
T ss_dssp -CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTS
T ss_pred -CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCC-CccEEeeeccCCCceeeeeecccccc
Confidence 4457889999994 46666 6899999999999888776322111337889 77765544432 2
Q ss_pred ----------cEEEEECCCCcEE--EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccC
Q 004404 631 ----------KVRIWSIPERQVV--DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRS 698 (755)
Q Consensus 631 ----------tVrIWDl~t~~~v--~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~ 698 (755)
.|.+||+.++++. ....+...+..++|+|+|++|+++ ++.|++||+.+++....+.
T Consensus 210 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---------- 277 (337)
T 1pby_B 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP---------- 277 (337)
T ss_dssp CTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----------
T ss_pred ccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec----------
Confidence 4689999998765 233445678899999999999998 7999999999988766432
Q ss_pred CCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCcc
Q 004404 699 HQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYV 743 (755)
Q Consensus 699 h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~ 743 (755)
....+.+++|+|+++ +|++++.++.|++|| .++.+..+..+..+
T Consensus 278 ~~~~~~~~~~s~dg~-~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 323 (337)
T 1pby_B 278 LPHSYYSVNVSTDGS-TVWLGGALGDLAAYDAETLEKKGQVDLPGNA 323 (337)
T ss_dssp CSSCCCEEEECTTSC-EEEEESBSSEEEEEETTTCCEEEEEECGGGC
T ss_pred CCCceeeEEECCCCC-EEEEEcCCCcEEEEECcCCcEEEEEEcCCCC
Confidence 224578999999998 788888899999999 57788888766443
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=1.3e-18 Score=206.61 Aligned_cols=291 Identities=11% Similarity=0.055 Sum_probs=198.5
Q ss_pred eeeecCCCcEEEEeCCCc-----EEEEeeCCCCcccceeeeeEeeccc----------------------CCEEEEEEcC
Q 004404 414 SSATDDSQDVSFHGQERV-----RVRQYGKSCKDLTALYKCQEIQAHN----------------------GSIWSIKFSL 466 (755)
Q Consensus 414 vs~~~ds~~~l~sg~~dg-----~Vriwd~~~~~~~~~~~~q~l~gH~----------------------~~I~sI~fSp 466 (755)
+..+.|++.+++.+..++ .|++|+..+++...+.. ...+. ..|.+++|+|
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD---SKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEEC---GGGTC--------------------CCEESCCCEECT
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccc---hhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 334445544444444365 89999998776543332 11122 2388999999
Q ss_pred CCCEEEEEECCCcEEEEeCcCCc--eeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccC
Q 004404 467 DGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD 544 (755)
Q Consensus 467 dg~~LaTgs~DGtVrVWdl~t~~--~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d 544 (755)
||++|++++. +.|.+||+.+++ ....+ ..+...+..+.|+|++..++....+ .+.
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-----~~~~~~~~~~~~SPDG~~la~~~~~-~i~---------------- 175 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQL-----THGEGFATDAKLSPKGGFVSFIRGR-NLW---------------- 175 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBC-----CCSSSCEEEEEECTTSSEEEEEETT-EEE----------------
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEc-----ccCCcccccccCCCCCCEEEEEeCC-cEE----------------
Confidence 9999999987 999999998772 22222 2334568889999999988876533 232
Q ss_pred cccccceeeecCCCceEE-eccCCC----------------CEEEEEecCC-cEEEEEeCCC------------------
Q 004404 545 HMVVPETVFALSDKPICS-FQGHLD----------------DVLDLSWSKS-QHLLSSSMDK------------------ 588 (755)
Q Consensus 545 ~~~~~~~v~~~s~k~i~~-l~gH~~----------------~V~~L~~spd-~~LaSgs~Dg------------------ 588 (755)
+|++....... ...+.. .+..++|+|+ .+|++++.|+
T Consensus 176 -------~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~ 248 (741)
T 2ecf_A 176 -------VIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDV 248 (741)
T ss_dssp -------EEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred -------EEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccc
Confidence 22222222211 122222 2478999999 5688887765
Q ss_pred ---------------cEEEEECCC-CcEEEEe---ecCCceEEEEEeeCCCcEEEEEEC-----CCcEEEEECCCCcEEE
Q 004404 589 ---------------TVRLWHLSS-KTCLKIF---SHSDYVTCIQFNPVDDRYFISGSL-----DAKVRIWSIPERQVVD 644 (755)
Q Consensus 589 ---------------tVrLWDl~t-~~~~~~~---~h~~~VtsVafsP~dg~~LaSgS~-----DgtVrIWDl~t~~~v~ 644 (755)
.|++||+.+ ++..... .|...+..++| | |+++|++++. +..|++||+.+++...
T Consensus 249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~ 326 (741)
T 2ecf_A 249 IEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRV 326 (741)
T ss_dssp EEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred eEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence 899999998 8766554 36788999999 9 9998887764 5679999999988765
Q ss_pred eccCCC-----CEEEEEEccCCCEEEEEECCCcEEEEECC-CCeeeeccccccccccccCCCCCeEEE-EEccCCCeEEE
Q 004404 645 WNDLHE-----MVTAACYTPDGQGALVGSYKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITGF-QFAPGSSSEVL 717 (755)
Q Consensus 645 ~~~~~~-----~VtsvafSPdG~~LasGs~DG~I~lwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vtsl-~fsPdg~~~L~ 717 (755)
....+. .+..++|+|||+++++++.+|.++||.+. .+. ... +..|...|..+ .|+|+++.+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~---------l~~~~~~v~~~~~~s~dg~~l~~ 396 (741)
T 2ecf_A 327 LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA---------LTHGNWSVDELLAVDEKAGLAYF 396 (741)
T ss_dssp EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE---------SCCSSSCEEEEEEEETTTTEEEE
T ss_pred EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee---------eeecceEEEeEeEEeCCCCEEEE
Confidence 543322 34689999999999999999988887765 233 222 23567778887 59999984445
Q ss_pred EEECCC--cEEEEE---CCcceEEeecCCccEEEEEEE
Q 004404 718 VTSADS--RIRVVD---GIDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 718 sgs~Dg--~IrVWD---~~~ll~~~~GH~~~V~sv~fs 750 (755)
+++.++ .++||+ .+..+..+.+ ...+..++|+
T Consensus 397 ~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~s 433 (741)
T 2ecf_A 397 RAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFA 433 (741)
T ss_dssp EECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEEC
T ss_pred EEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEEC
Confidence 566665 899998 2555666765 5556666664
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=2.8e-18 Score=202.90 Aligned_cols=365 Identities=12% Similarity=0.006 Sum_probs=218.1
Q ss_pred CceecHHHHHHhcCCcHHHHHHHhhcc--cccCCCCCccccccCCCCCCccccccCCccc---ccceeEEeecccccccc
Q 004404 324 GRQLTIEEFEMCVGHSPIVQELMRRQN--VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK---SIRTVASSVTGHKERRS 398 (755)
Q Consensus 324 g~~lt~~e~~~~~GHs~~V~~l~~~~~--~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~---~v~sv~~s~~g~~~~~~ 398 (755)
|+++|++++....-+ ..+..++|+++ ....+.|++|+ +|+..+|+....+. .+.. .+.+++++++|.
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~spdg~~~~~~~dg~i~-~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~----- 73 (723)
T 1xfd_A 2 KKKVTVEDLFSEDFK-IHDPEAKWISDTEFIYREQKGTVR-LWNVETNTSTVLIE-GKKIESLRAIRYEISPDRE----- 73 (723)
T ss_dssp CCCCCHHHHTCTTTC-CCCCCCCBSSSSCBCCCCSSSCEE-EBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSS-----
T ss_pred CccccHHHHhCCCCc-ccccccEEcCCCcEEEEeCCCCEE-EEECCCCcEEEEec-cccccccccceEEECCCCC-----
Confidence 566788876543322 23567888888 33447899999 99998887654443 2221 355666666543
Q ss_pred CccccCCccCCCceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCC
Q 004404 399 SDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC 478 (755)
Q Consensus 399 ~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DG 478 (755)
.++.+..+... .....++.|++|++.+++...+ ....+|...|..++|||||++||+++. +
T Consensus 74 -------------~l~~~~~~~~~--~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~~~~SPdG~~la~~~~-~ 134 (723)
T 1xfd_A 74 -------------YALFSYNVEPI--YQHSYTGYYVLSKIPHGDPQSL---DPPEVSNAKLQYAGWGPKGQQLIFIFE-N 134 (723)
T ss_dssp -------------EEEEEESCCCC--SSSCCCSEEEEEESSSCCCEEC---CCTTCCSCCCSBCCBCSSTTCEEEEET-T
T ss_pred -------------EEEEEecCccc--eeecceeeEEEEECCCCceEec---cCCccccccccccEECCCCCEEEEEEC-C
Confidence 22222222111 1112358899999987765222 223456667999999999999999986 7
Q ss_pred cEEEEeCcCCceeeeeeccccc----Cc---------cccEEEeecCCCCceeccccCCC-ceeeecccc-------ccc
Q 004404 479 VIHVWQVVESERKGELLEKQED----GH---------LNMLLLANGSPEPTSLSPKHLDN-HLEKKRRGR-------SIN 537 (755)
Q Consensus 479 tVrVWdl~t~~~~~~l~~~~~~----~~---------~~~v~~v~~s~dg~~l~~~s~d~-~i~~~~~~~-------~~~ 537 (755)
.|++|++.+++........... ++ ...+..+.|+|++..|+....+. .+..+.... ...
T Consensus 135 ~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (723)
T 1xfd_A 135 NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK 214 (723)
T ss_dssp EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcce
Confidence 9999999887654332110000 00 01236789999999888765432 111111100 000
Q ss_pred ccccccCcc---cccceeeecCCCc-eEEeccC------CCCEEEEEecCCcEEE-EEeC----CCcEEEEECCCCcEEE
Q 004404 538 RKSLSLDHM---VVPETVFALSDKP-ICSFQGH------LDDVLDLSWSKSQHLL-SSSM----DKTVRLWHLSSKTCLK 602 (755)
Q Consensus 538 ~~s~s~d~~---~~~~~v~~~s~k~-i~~l~gH------~~~V~~L~~spd~~La-Sgs~----DgtVrLWDl~t~~~~~ 602 (755)
......+.. .....+|++.... ...+..| ...+..++|+|++.++ +... +..|++||+.++++..
T Consensus 215 ~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~ 294 (723)
T 1xfd_A 215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK 294 (723)
T ss_dssp EEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred eccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence 000000000 0011345554433 3555554 6679999999996544 4432 3679999999998877
Q ss_pred Eee--cCCceE----EEEEeeCCCcEEEE--EECCC------cEEEEE-CCCCc---EEEeccCCCCEEE-EEEccCCCE
Q 004404 603 IFS--HSDYVT----CIQFNPVDDRYFIS--GSLDA------KVRIWS-IPERQ---VVDWNDLHEMVTA-ACYTPDGQG 663 (755)
Q Consensus 603 ~~~--h~~~Vt----sVafsP~dg~~LaS--gS~Dg------tVrIWD-l~t~~---~v~~~~~~~~Vts-vafSPdG~~ 663 (755)
.+. +...+. .++|+| |++.|+. ...++ .|.+|| ..++. ...+......+.. ++|+|||+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~ 373 (723)
T 1xfd_A 295 KHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNK 373 (723)
T ss_dssp EEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTE
T ss_pred EEEeccCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCE
Confidence 664 445443 889999 8886664 45677 577778 45555 3444434445554 699999999
Q ss_pred EEEEECC---CcEEEEECCCCe--eeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC
Q 004404 664 ALVGSYK---GSCHLYNTSENK--LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (755)
Q Consensus 664 LasGs~D---G~I~lwDl~~~~--~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D 722 (755)
|+..+.+ +.++||++.... ....+. ....|...+..++|+|+|+.+++..+..
T Consensus 374 l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 374 IYFLSTEDLPRRRQLYSANTVGNFNRQCLS------CDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp EEEEESSSCTTCCEEEEECSSTTCCCBCSS------TTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred EEEEEcCCCCcceEEEEEeCCCCCCcceec------ccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 9876655 789999986432 111111 0001567788999999998444443433
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.79 E-value=2.2e-18 Score=204.57 Aligned_cols=261 Identities=12% Similarity=0.047 Sum_probs=190.8
Q ss_pred cCCEEEEEEcCCCCEEEEEEC-CC-----cEEEEeCcCCceeeeeeccccc----------Cc---------cccEEEee
Q 004404 456 NGSIWSIKFSLDGRYLASAGE-DC-----VIHVWQVVESERKGELLEKQED----------GH---------LNMLLLAN 510 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~LaTgs~-DG-----tVrVWdl~t~~~~~~l~~~~~~----------~~---------~~~v~~v~ 510 (755)
...|.+++|+|||++|++++. |+ .|++||+.+++....+...... .. ...+..+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 9999999888755443211100 00 02356788
Q ss_pred cCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCC---ceEEeccCCCCEEEEEecCCc-EEEEEeC
Q 004404 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK---PICSFQGHLDDVLDLSWSKSQ-HLLSSSM 586 (755)
Q Consensus 511 ~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k---~i~~l~gH~~~V~~L~~spd~-~LaSgs~ 586 (755)
|+|++..++.... +.+ .+|++... .+..+..|...+..++|+|++ +|+.++
T Consensus 116 ~SpDg~~l~~~~~-~~i-----------------------~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~- 170 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GEL-----------------------YLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR- 170 (741)
T ss_dssp ECTTSSEEEEEET-TEE-----------------------EEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-
T ss_pred ECCCCCEEEEEeC-CcE-----------------------EEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-
Confidence 9999998877654 222 34555444 566677888899999999994 566665
Q ss_pred CCcEEEEECCCCcEEEEee-cCCc----------------eEEEEEeeCCCcEEEEEECCC-------------------
Q 004404 587 DKTVRLWHLSSKTCLKIFS-HSDY----------------VTCIQFNPVDDRYFISGSLDA------------------- 630 (755)
Q Consensus 587 DgtVrLWDl~t~~~~~~~~-h~~~----------------VtsVafsP~dg~~LaSgS~Dg------------------- 630 (755)
++.|++||+.+++...... +... +..++|+| |+++|++++.|+
T Consensus 171 ~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 171 GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 5799999999988766554 3222 47899999 999999988776
Q ss_pred --------------cEEEEECCC-CcEEEec---cCCCCEEEEEEccCCCEEEEEEC-----CCcEEEEECCCCeeeecc
Q 004404 631 --------------KVRIWSIPE-RQVVDWN---DLHEMVTAACYTPDGQGALVGSY-----KGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 631 --------------tVrIWDl~t-~~~v~~~---~~~~~VtsvafSPdG~~LasGs~-----DG~I~lwDl~~~~~~~~~ 687 (755)
.|++||+.+ ++..... .+...+..++| |||++|+++.. +..|++||+.+++.....
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 889999998 8766544 35568999999 99999998764 567999999998766543
Q ss_pred ccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE---CCcceEEeecCCccEEEE-EEE
Q 004404 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD---GIDLVHKFKGENYVQYMV-CIV 750 (755)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD---~~~ll~~~~GH~~~V~sv-~fs 750 (755)
... .......+..++|+|+|+ ++++++.|+.++||. .+. +..+..|...+..+ .|+
T Consensus 329 ~~~-----~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s 388 (741)
T 2ecf_A 329 HET-----SPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVD 388 (741)
T ss_dssp EEE-----CSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEE
T ss_pred EcC-----CCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEe
Confidence 210 001111456789999998 888889999877775 345 78888888777766 354
No 139
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.79 E-value=8.8e-18 Score=208.23 Aligned_cols=350 Identities=11% Similarity=0.080 Sum_probs=233.3
Q ss_pred HHhcCCcHHHHHHHhhcc--cccCCCCCccccccCCCC-CCccccccCCcccccceeEEeeccccccccCccccCCccCC
Q 004404 333 EMCVGHSPIVQELMRRQN--VEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (755)
Q Consensus 333 ~~~~GHs~~V~~l~~~~~--~~sgs~D~tv~~~Wd~~~-g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g 409 (755)
..+.+|...|..++++++ +.+++.|+++. +|.... +.....+. .+. .+..+
T Consensus 197 ~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~-l~~~~~~g~~~~~l~-~~~-~~~~~----------------------- 250 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGHRIYFITDIDGFGQ-IYSTDLDGKDLRKHT-SFT-DYYPR----------------------- 250 (1045)
T ss_dssp EEEECCSSCCEEEEEETTEEEEEECTTSSCE-EEEEETTSCSCEECC-CCC-SSCEE-----------------------
T ss_pred EECcCCCCcccceEEeCCEEEEEEeccCceE-EEEEeCCCCcceEec-CCC-Cccee-----------------------
Confidence 344788888888888877 44566778887 886543 22222221 110 11122
Q ss_pred CceeeeeecCCCcEEEEeCCCcEEEEeeCCCCcccceee-----eeEeecccCCEEEEEEc-CCCCEEEEEECCCcEEEE
Q 004404 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYK-----CQEIQAHNGSIWSIKFS-LDGRYLASAGEDCVIHVW 483 (755)
Q Consensus 410 ~~~~vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~-----~q~l~gH~~~I~sI~fS-pdg~~LaTgs~DGtVrVW 483 (755)
..++++..+++. .++.|++|+.....+..+.. ...+..|...|.+++|+ |||++|++++ ++.|.+|
T Consensus 251 -----~~SpDG~~la~~--~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~ 322 (1045)
T 1k32_A 251 -----HLNTDGRRILFS--KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQ 322 (1045)
T ss_dssp -----EEEESSSCEEEE--ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEE
T ss_pred -----eEcCCCCEEEEE--eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEE
Confidence 223444444443 37899999884333221100 00011255679999999 9999999988 7899999
Q ss_pred eCcCCceeeeeecccccCccc-cEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEE
Q 004404 484 QVVESERKGELLEKQEDGHLN-MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS 562 (755)
Q Consensus 484 dl~t~~~~~~l~~~~~~~~~~-~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~ 562 (755)
++..++... + ..+.. .+..+.|+ ++..++....+..+. .+++........
T Consensus 323 ~~~~~~~~~-~-----~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~----------------------~~~d~~~~~~~~ 373 (1045)
T 1k32_A 323 DVSGTYVLK-V-----PEPLRIRYVRRGGD-TKVAFIHGTREGDFL----------------------GIYDYRTGKAEK 373 (1045)
T ss_dssp CTTSSBEEE-C-----SCCSCEEEEEECSS-SEEEEEEEETTEEEE----------------------EEEETTTCCEEE
T ss_pred cCCCCceEE-c-----cCCCcceEEeeeEc-CCCeEEEEECCCceE----------------------EEEECCCCCceE
Confidence 997765332 2 23334 67788888 887776654322221 134444445555
Q ss_pred eccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEe-ecCCceEEEEEeeCCCcEEEEEECCC----------
Q 004404 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDA---------- 630 (755)
Q Consensus 563 l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~-~h~~~VtsVafsP~dg~~LaSgS~Dg---------- 630 (755)
+.+|...+..++|+|+ .+|++++.++.|++||+.+++....+ .|...+.+++|+| |+++|++++.++
T Consensus 374 l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~ 452 (1045)
T 1k32_A 374 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQ 452 (1045)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEE
T ss_pred ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCC
Confidence 6688889999999999 67999999999999999999988888 5889999999999 999998887654
Q ss_pred cEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec-------cc---------------
Q 004404 631 KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK-------SP--------------- 688 (755)
Q Consensus 631 tVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~-------~~--------------- 688 (755)
.|++||+.+++...+..+...+..++|+|||++|++++.++...+|+......... ..
T Consensus 453 ~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (1045)
T 1k32_A 453 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 532 (1045)
T ss_dssp EEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred eEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCc
Confidence 89999999998777777778899999999999999999988888887654332100 00
Q ss_pred -------ccc-----ccccccCCCCCeEEEEEccCCCeEEEE-------------EECCCcEEEEECC-cceEEeecCCc
Q 004404 689 -------INL-----QNKKKRSHQRKITGFQFAPGSSSEVLV-------------TSADSRIRVVDGI-DLVHKFKGENY 742 (755)
Q Consensus 689 -------i~~-----~~~~~~~h~~~Vtsl~fsPdg~~~L~s-------------gs~Dg~IrVWD~~-~ll~~~~GH~~ 742 (755)
+.+ ....+..|...+..+.|+|++. ++++ ......|.+||.. ..+..+. .
T Consensus 533 ~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~-~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~ 608 (1045)
T 1k32_A 533 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI-LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---N 608 (1045)
T ss_dssp GSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE-EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---E
T ss_pred cccccccccccCHhHceEEcCCCCCChhheEEcCCCe-EEEEecccCcccccccccCCCceEEEEECCCCcEEEee---c
Confidence 000 1112335678899999999986 4554 1234578888832 2233333 4
Q ss_pred cEEEEEEE
Q 004404 743 VQYMVCIV 750 (755)
Q Consensus 743 ~V~sv~fs 750 (755)
.+..++|+
T Consensus 609 ~v~~~~~S 616 (1045)
T 1k32_A 609 NLTDLRLS 616 (1045)
T ss_dssp EEEEEEEC
T ss_pred CcceEEEC
Confidence 45555543
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=6.7e-18 Score=195.35 Aligned_cols=249 Identities=9% Similarity=0.046 Sum_probs=177.4
Q ss_pred ccCCEEEEEEcCCCCEEEEEEC-CCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccC---CCceeee
Q 004404 455 HNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL---DNHLEKK 530 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~-DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~---d~~i~~~ 530 (755)
+..+|++++|+|||++||+++. ||+++||++..++. ..+ ...+...+..+.|+|+ .++++... +....+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~l----t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l- 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKL----NREPINSVLDPHYGVG-RVILVRDVSKGAEQHAL- 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EEC----CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEE-
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eee----ecccccccccccCCCC-eEEEEeccCCCCcceEE-
Confidence 4668999999999999999887 99999999855443 332 1222346778899999 66665432 111110
Q ss_pred cccccccccccccCcccccceeeec--CCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~--s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~h 606 (755)
..+.. .+... .+..+. .+...+|+|+ +.+++.+.++.+.|||+.++++.....+
T Consensus 93 --------------------~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~ 150 (582)
T 3o4h_A 93 --------------------FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL 150 (582)
T ss_dssp --------------------EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred --------------------EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC
Confidence 01112 22222 222222 2335567766 4555555555566999999987777665
Q ss_pred CCceEEEEEeeCCCcEEEEEECC----CcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCC--cEEEEECCC
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLD----AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG--SCHLYNTSE 680 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~D----gtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG--~I~lwDl~~ 680 (755)
.. .+++|+| ||++|++++.+ ..|++||+.+++...+..+...+..++|+|||++|+++..++ .|++||+.+
T Consensus 151 ~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 151 PG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp SS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred CC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence 54 8899999 99999988877 789999999999888888888899999999999999888888 899999998
Q ss_pred CeeeeccccccccccccCCCCCeEEEE--------EccCCCeEEEEEECCCcEEEEECCcceEEeecCCccEEEEEE
Q 004404 681 NKLQQKSPINLQNKKKRSHQRKITGFQ--------FAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGENYVQYMVCI 749 (755)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~--------fsPdg~~~L~sgs~Dg~IrVWD~~~ll~~~~GH~~~V~sv~f 749 (755)
++.. .+ ..|...+..+. |+|+| .++++++.|++++||+.++++. .+...+.+++|
T Consensus 228 ~~~~-~~---------~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~g~~~~---~~~~~v~~~~~ 290 (582)
T 3o4h_A 228 GSVE-DL---------ELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFIDGERVE---APQGNHGRVVL 290 (582)
T ss_dssp CCEE-EC---------CCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEETTEEEC---CCSSEEEEEEE
T ss_pred CcEE-Ec---------cCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEECCeec---cCCCceEEEEe
Confidence 8766 32 25555566666 99999 4899999999999999843332 33344555554
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.78 E-value=6.4e-17 Score=172.77 Aligned_cols=254 Identities=9% Similarity=0.110 Sum_probs=186.7
Q ss_pred ccCCEEEEEEcCCCCEEEEEEC-------CCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCcee-ccccCCCc
Q 004404 455 HNGSIWSIKFSLDGRYLASAGE-------DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSL-SPKHLDNH 526 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~-------DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l-~~~s~d~~ 526 (755)
....+..++|+|++++|++++. ++.|.+||..+++....+... .....+.+++++..+ ++...++.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND------LKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES------SCCCSEEEETTTTEEEEEETTTTE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC------CCcceEEECCCCCEEEEEecCCCE
Confidence 4467889999999998888874 568999999988877665321 123456778887744 33333344
Q ss_pred eeeecccccccccccccCcccccceeeec-CCCceEEeccCCC---------CEEEEEecCC-cEEEEEe--CCCcEEEE
Q 004404 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD---------DVLDLSWSKS-QHLLSSS--MDKTVRLW 593 (755)
Q Consensus 527 i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~---------~V~~L~~spd-~~LaSgs--~DgtVrLW 593 (755)
+. +|+. +++.+..+..+.. .+.+++|+|+ ++++++. .++.|.+|
T Consensus 113 v~-----------------------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 113 VT-----------------------AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp EE-----------------------EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred EE-----------------------EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 32 2332 3344445544332 2788999998 5566555 47899999
Q ss_pred ECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC-----CCCEEEEEEccCCCEEEEE
Q 004404 594 HLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-----HEMVTAACYTPDGQGALVG 667 (755)
Q Consensus 594 Dl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~-----~~~VtsvafSPdG~~LasG 667 (755)
|+.+++.+..+. +...+.+++|+| ++++|++++.++.|.+||+.+++.+..... ...+..++|+|+|++|+++
T Consensus 170 d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 170 DGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp ETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred cCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 999999999887 667789999999 999999999999999999999988754432 4468899999999988887
Q ss_pred ECC-CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccE
Q 004404 668 SYK-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQ 744 (755)
Q Consensus 668 s~D-G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V 744 (755)
+.+ +.|++||+.+++....+.. ++ ...++|+|+++.++++...++.|.+|| .++.+..+..+. .+
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~--------~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~ 316 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAA--------PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HP 316 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEEC--------SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EE
T ss_pred eCCCCEEEEEECCCCcEEEEEEc--------CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CC
Confidence 654 8999999999887765432 11 246899999984444445799999999 467777776544 45
Q ss_pred EEEEEE
Q 004404 745 YMVCIV 750 (755)
Q Consensus 745 ~sv~fs 750 (755)
..++|.
T Consensus 317 ~~~~~s 322 (353)
T 3vgz_A 317 NSLALS 322 (353)
T ss_dssp EEEEEC
T ss_pred CeEEEc
Confidence 666664
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.77 E-value=7.4e-18 Score=199.30 Aligned_cols=281 Identities=12% Similarity=0.092 Sum_probs=185.2
Q ss_pred CCCcEEEEeeCCCCcccceeeeeEeecccC---CEEEEEEcCCCCEEEEEECC---------CcEEEEeCcCCceeeeee
Q 004404 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNG---SIWSIKFSLDGRYLASAGED---------CVIHVWQVVESERKGELL 495 (755)
Q Consensus 428 ~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~---~I~sI~fSpdg~~LaTgs~D---------GtVrVWdl~t~~~~~~l~ 495 (755)
+.++.|++|+..+++.. +.+.+|.. .|.+++|||||++|++++.+ +.|.+||+.+++. ..+.
T Consensus 34 ~~dg~i~~~d~~~g~~~-----~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~ 107 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTST-----VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLD 107 (723)
T ss_dssp CSSSCEEEBCGGGCCCE-----EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECC
T ss_pred eCCCCEEEEECCCCcEE-----EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-Eecc
Confidence 56789999999877653 23455654 49999999999999999875 7788999988765 2221
Q ss_pred cccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC-CCceEEeccCCC------
Q 004404 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLD------ 568 (755)
Q Consensus 496 ~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k~i~~l~gH~~------ 568 (755)
. ...+...+..+.|+|++..++.... ..+. +|+.. ++.......+..
T Consensus 108 ~--~~~~~~~~~~~~~SPdG~~la~~~~-~~i~-----------------------~~~~~~g~~~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 108 P--PEVSNAKLQYAGWGPKGQQLIFIFE-NNIY-----------------------YCAHVGKQAIRVVSTGKEGVIYNG 161 (723)
T ss_dssp C--TTCCSCCCSBCCBCSSTTCEEEEET-TEEE-----------------------EESSSSSCCEEEECCCBTTTEEEE
T ss_pred C--CccccccccccEECCCCCEEEEEEC-CeEE-----------------------EEECCCCceEEEecCCCCCceECc
Confidence 1 1233344667899999988887654 2222 22221 222222333222
Q ss_pred ------------CEEEEEecCC-cEEEEEeCCC----------------------------------cEEEEECCCCcEE
Q 004404 569 ------------DVLDLSWSKS-QHLLSSSMDK----------------------------------TVRLWHLSSKTCL 601 (755)
Q Consensus 569 ------------~V~~L~~spd-~~LaSgs~Dg----------------------------------tVrLWDl~t~~~~ 601 (755)
.+.+++|+|+ .+|++++.|+ +|++||+.++++.
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~ 241 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD 241 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee
Confidence 2378999999 5788777553 7999999988865
Q ss_pred EEee-c------CCceEEEEEeeCCCcEEEEEEC----CCcEEEEECCCCcEEEecc--CCCCE----EEEEEccCCCEE
Q 004404 602 KIFS-H------SDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIPERQVVDWND--LHEMV----TAACYTPDGQGA 664 (755)
Q Consensus 602 ~~~~-h------~~~VtsVafsP~dg~~LaSgS~----DgtVrIWDl~t~~~v~~~~--~~~~V----tsvafSPdG~~L 664 (755)
..+. + ...+..++|+| |+++|++... +..|++||+.++++..... +...+ ..++|+|||+.|
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 320 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred EEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeE
Confidence 5554 3 56899999999 9998877653 3579999999988765432 22333 378999999977
Q ss_pred EE--EECCC------cEEEEE-CCCCee--eeccccccccccccCCCCCeEE-EEEccCCCeEEEEEEC-C--CcEEEEE
Q 004404 665 LV--GSYKG------SCHLYN-TSENKL--QQKSPINLQNKKKRSHQRKITG-FQFAPGSSSEVLVTSA-D--SRIRVVD 729 (755)
Q Consensus 665 as--Gs~DG------~I~lwD-l~~~~~--~~~~~i~~~~~~~~~h~~~Vts-l~fsPdg~~~L~sgs~-D--g~IrVWD 729 (755)
+. +..++ .|++|| ..++.. ... +..+...+.. ++|+|+|+ .|+..+. + +.++||+
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---------l~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 321 FFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS---------ITSGDWDVTKILAYDEKGN-KIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp EEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB---------SCCSSSCEEEEEEEETTTT-EEEEEESSSCTTCCEEEE
T ss_pred EEEEecccCCCcceeEEEEEeccCCCCccceeE---------eecCCeEEEeeeEEcCCCC-EEEEEEcCCCCcceEEEE
Confidence 75 45566 577777 344431 221 1123334554 68999998 5655544 4 7899998
Q ss_pred C---C-cceEEeec---CCccEEEEEEEE
Q 004404 730 G---I-DLVHKFKG---ENYVQYMVCIVL 751 (755)
Q Consensus 730 ~---~-~ll~~~~G---H~~~V~sv~fs~ 751 (755)
. + .....+.+ |...+..++|+|
T Consensus 391 ~~~~~~~~~~~l~~~~~~~~~~~~~~~sp 419 (723)
T 1xfd_A 391 ANTVGNFNRQCLSCDLVENCTYFSASFSH 419 (723)
T ss_dssp ECSSTTCCCBCSSTTSSSSCCCCEEEECT
T ss_pred EeCCCCCCcceecccccCCCCeEEEEECC
Confidence 2 2 23334443 556666666653
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=2.3e-16 Score=168.50 Aligned_cols=267 Identities=9% Similarity=0.049 Sum_probs=188.9
Q ss_pred eeeecCCCcEEEEeCC------CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEE-EECCCcEEEEeCc
Q 004404 414 SSATDDSQDVSFHGQE------RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS-AGEDCVIHVWQVV 486 (755)
Q Consensus 414 vs~~~ds~~~l~sg~~------dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaT-gs~DGtVrVWdl~ 486 (755)
+....++..+.+.... ++.|.+||..+++..... . +...+..++|+|+|++|+. ...++.|.+||+.
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-----~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI-----H-NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE-----E-ESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE-----e-cCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 3344455444444433 789999999876654333 2 2345788999999996554 4557999999999
Q ss_pred CCceeeeeeccccc----CccccEEEeecCCCCceecccc--CCCceeeecccccccccccccCcccccceeeec-CCCc
Q 004404 487 ESERKGELLEKQED----GHLNMLLLANGSPEPTSLSPKH--LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKP 559 (755)
Q Consensus 487 t~~~~~~l~~~~~~----~~~~~v~~v~~s~dg~~l~~~s--~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~ 559 (755)
+++....+...... ........+.++|++..++... .++.+ .+++. +.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i-----------------------~~~d~~~~~~ 176 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVI-----------------------WVVDGGNIKL 176 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE-----------------------EEEETTTTEE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceE-----------------------EEEcCCCCce
Confidence 98876665321110 1112256788899987665543 12323 22333 3445
Q ss_pred eEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEee-----cCCceEEEEEeeCCCcEEEEEEC-CCcE
Q 004404 560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSL-DAKV 632 (755)
Q Consensus 560 i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-----h~~~VtsVafsP~dg~~LaSgS~-DgtV 632 (755)
+..+..+...+.+++|+|+ ++|+++..++.|.+||+.+++.+..+. +...+..++|+| ++++++.+.. ++.|
T Consensus 177 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v 255 (353)
T 3vgz_A 177 KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEV 255 (353)
T ss_dssp EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEE
T ss_pred EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEE
Confidence 5556556666889999998 678899999999999999999888775 355688999999 8887666655 5999
Q ss_pred EEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccC
Q 004404 633 RIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (755)
Q Consensus 633 rIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd 711 (755)
.+||+.+++.+........ ..++|+|+|++++++. .++.|.+||+.+++....+. ....+.+++|+|+
T Consensus 256 ~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~----------~~~~~~~~~~s~d 324 (353)
T 3vgz_A 256 LVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD----------TPTHPNSLALSAD 324 (353)
T ss_dssp EEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----------CCSEEEEEEECTT
T ss_pred EEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----------cCCCCCeEEEcCC
Confidence 9999999988766554443 5799999999777766 68999999999998876542 2346799999999
Q ss_pred CCeEEEEEECC
Q 004404 712 SSSEVLVTSAD 722 (755)
Q Consensus 712 g~~~L~sgs~D 722 (755)
|+ +|+++..+
T Consensus 325 g~-~l~v~~~~ 334 (353)
T 3vgz_A 325 GK-TLYVSVKQ 334 (353)
T ss_dssp SC-EEEEEEEC
T ss_pred CC-EEEEEEcc
Confidence 98 45555444
No 144
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=2e-17 Score=185.52 Aligned_cols=168 Identities=13% Similarity=0.095 Sum_probs=128.7
Q ss_pred cccCCEEEEEEcCCCCEEE----EEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 454 AHNGSIWSIKFSLDGRYLA----SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~La----Tgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
.|.+.|++++|+|+|++|| +|+.|++|+|||+.+...... ....
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~-------~~~~------------------------- 137 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK-------QQKR------------------------- 137 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC-------SSCC-------------------------
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc-------CCcc-------------------------
Confidence 4678899999999999999 888999999999854310000 0000
Q ss_pred ecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEe-ec
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF-SH 606 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~-~h 606 (755)
.-..+..+.+|...|++++|+|+ .+|++++.||+|++||++++..+... .|
T Consensus 138 --------------------------~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 138 --------------------------PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp --------------------------CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred --------------------------eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 00113345679999999999996 68999999999999999988665444 48
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-eccC-------CCCEEEEEEccCCCEEEE-EECCCc-----
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDL-------HEMVTAACYTPDGQGALV-GSYKGS----- 672 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~-~~~~-------~~~VtsvafSPdG~~Las-Gs~DG~----- 672 (755)
...|++++|+| ++++|++|+.||+|++||++ ++... ...+ ...|.+++|++++.++++ ...+|.
T Consensus 192 ~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 192 TVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP 269 (434)
T ss_dssp GGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred CCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence 89999999999 89999999999999999998 44433 2221 127999999999887766 344433
Q ss_pred -EEEEECCCC
Q 004404 673 -CHLYNTSEN 681 (755)
Q Consensus 673 -I~lwDl~~~ 681 (755)
+++|++...
T Consensus 270 ~v~i~~l~~~ 279 (434)
T 2oit_A 270 DVVMALLPKK 279 (434)
T ss_dssp EEEEEECCCT
T ss_pred ceEEEEeccC
Confidence 899999865
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.76 E-value=2e-16 Score=168.07 Aligned_cols=275 Identities=7% Similarity=0.003 Sum_probs=182.2
Q ss_pred cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCC
Q 004404 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (755)
Q Consensus 351 ~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~d 430 (755)
.++.+.+++|. +||..+++....... ..... . +....++..+++....+
T Consensus 13 ~v~~~~~~~v~-~~d~~~~~~~~~~~~-~~~~~-~----------------------------~~~s~dg~~l~~~~~~~ 61 (331)
T 3u4y_A 13 IVVEQHLRRIS-FFSTDTLEILNQITL-GYDFV-D----------------------------TAITSDCSNVVVTSDFC 61 (331)
T ss_dssp EEEEGGGTEEE-EEETTTCCEEEEEEC-CCCEE-E----------------------------EEECSSSCEEEEEESTT
T ss_pred EEEecCCCeEE-EEeCcccceeeeEEc-cCCcc-e----------------------------EEEcCCCCEEEEEeCCC
Confidence 56677888999 999988765433321 11111 2 22233444455666678
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCC---cEEEEeCcCCceeeeeecccccCccccEE
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC---VIHVWQVVESERKGELLEKQEDGHLNMLL 507 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DG---tVrVWdl~t~~~~~~l~~~~~~~~~~~v~ 507 (755)
+.|++|+..+++.. ...+..+..++.+++|+|+|++|+++..++ .|.+||+.+++....+.. .....
T Consensus 62 ~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~------~~~~~ 131 (331)
T 3u4y_A 62 QTLVQIETQLEPPK----VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI------PYDAV 131 (331)
T ss_dssp CEEEEEECSSSSCE----EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC------CTTEE
T ss_pred CeEEEEECCCCcee----EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC------CCCcc
Confidence 89999999877651 334556777776699999999999555553 899999998877665421 12346
Q ss_pred EeecCCCCceeccc-cCCCc-eeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCc-EEE-E
Q 004404 508 LANGSPEPTSLSPK-HLDNH-LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLL-S 583 (755)
Q Consensus 508 ~v~~s~dg~~l~~~-s~d~~-i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~-~La-S 583 (755)
.+.++|++..++.. ..+.. +..+..... .. +.... ...+ .+...+..++|+|++ +++ +
T Consensus 132 ~~~~spdg~~l~~~~~~~~~~i~~~~~~~~---------g~-----~~~~~---~~~~-~~~~~~~~~~~spdg~~l~v~ 193 (331)
T 3u4y_A 132 GIAISPNGNGLILIDRSSANTVRRFKIDAD---------GV-----LFDTG---QEFI-SGGTRPFNITFTPDGNFAFVA 193 (331)
T ss_dssp EEEECTTSSCEEEEEETTTTEEEEEEECTT---------CC-----EEEEE---EEEE-CSSSSEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEEecCCCceEEEEEECCC---------Cc-----EeecC---Cccc-cCCCCccceEECCCCCEEEEE
Confidence 88999998755443 33333 432222110 00 00000 1112 334558999999994 454 4
Q ss_pred EeCCCcEEEEECCCCcE---EEEeecCCceEEEEEeeCCCcEEEEEE-CCCcEEEEECCCCcE--EEeccCC--------
Q 004404 584 SSMDKTVRLWHLSSKTC---LKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQV--VDWNDLH-------- 649 (755)
Q Consensus 584 gs~DgtVrLWDl~t~~~---~~~~~h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWDl~t~~~--v~~~~~~-------- 649 (755)
+..++.|++||+.+++. +..+.....+..++|+| ++++|+.+. .++.|.+||+.++++ +......
T Consensus 194 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
T 3u4y_A 194 NLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL 272 (331)
T ss_dssp ETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG
T ss_pred eCCCCeEEEEECCCCcccceeeeccCCCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc
Confidence 55689999999999888 77787778889999999 898766554 578899999999887 2221111
Q ss_pred CCEEEEEEccCCCEEEEEEC-CCcEEEEECCCCeeee
Q 004404 650 EMVTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQQ 685 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~~~~~~ 685 (755)
.....++|+|+|++|++++. ++.|.+||+.......
T Consensus 273 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 273 FGANQMALNKTETKLFISANISRELKVFTISGKVVGY 309 (331)
T ss_dssp TTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccccceEECCCCCEEEEecCCCCcEEEEEecCCcccc
Confidence 12356899999999877665 5699999998766544
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=1.1e-17 Score=187.60 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=123.8
Q ss_pred cCCCCEEEEEecCC-cEEE----EEeCCCcEEEEECCCC--------cE---EEEee-cCCceEEEEEeeCCCcEEEEEE
Q 004404 565 GHLDDVLDLSWSKS-QHLL----SSSMDKTVRLWHLSSK--------TC---LKIFS-HSDYVTCIQFNPVDDRYFISGS 627 (755)
Q Consensus 565 gH~~~V~~L~~spd-~~La----Sgs~DgtVrLWDl~t~--------~~---~~~~~-h~~~VtsVafsP~dg~~LaSgS 627 (755)
.|...|++++|+|+ .+|+ +++.|++|+|||+.++ +. +..+. |...|++|+|+|.++.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 35678999999998 6677 6788999999998654 22 33333 8999999999994389999999
Q ss_pred CCCcEEEEECCCCcEE-EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEE
Q 004404 628 LDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (755)
Q Consensus 628 ~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (755)
.||+|++||++++..+ ....|...|++++|+|+|++|++|+.||.|++||++ ++....+.... .....|...|.++
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~--~~~~~~~~~v~~v 246 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP--FYESDHPVRVLDV 246 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCT--TCCTTSCEEEEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCc--ccCCCCceeEEEE
Confidence 9999999999988655 445567899999999999999999999999999998 44443322111 0011345589999
Q ss_pred EEccCCCeEEEEEECCCc------EEEEEC
Q 004404 707 QFAPGSSSEVLVTSADSR------IRVVDG 730 (755)
Q Consensus 707 ~fsPdg~~~L~sgs~Dg~------IrVWD~ 730 (755)
.|++++...++.+..||. +++|+.
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEe
Confidence 999987522233455543 899993
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.75 E-value=5.4e-17 Score=191.73 Aligned_cols=288 Identities=11% Similarity=0.094 Sum_probs=182.2
Q ss_pred EEeCCCcEEEEeeCCCCcc--cceeeeeEe-----------ecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCcee
Q 004404 425 FHGQERVRVRQYGKSCKDL--TALYKCQEI-----------QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK 491 (755)
Q Consensus 425 ~sg~~dg~Vriwd~~~~~~--~~~~~~q~l-----------~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~ 491 (755)
+....++ | +||..+++. ..++....+ ..+...|.+++|+|| ++|+.+. ++.|++||+.+++..
T Consensus 39 ~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~ 114 (706)
T 2z3z_A 39 VFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT 114 (706)
T ss_dssp EEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE
Confidence 3334455 8 999988776 433321111 011257999999999 6655553 599999999887543
Q ss_pred eeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccC-----
Q 004404 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH----- 566 (755)
Q Consensus 492 ~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH----- 566 (755)
... .+...+..+.|+|++..++.. .++.+..+..... .. ..++.......+
T Consensus 115 ~l~------~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~--------~~---------~~g~~~~~~~~~~~~~~ 170 (706)
T 2z3z_A 115 YLF------DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKL--------GE---------GMSRAIAVTIDGTETLV 170 (706)
T ss_dssp EEE------CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCT--------TS---------CCCCCEESCSCCBTTEE
T ss_pred Ecc------CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcc--------cc---------cCCCcEEeccCCCCCeE
Confidence 322 122345567899999888875 3444433322110 00 001122112222
Q ss_pred ---------CCCEEEEEecCC-cEEEEEe---------------------------------CCCcEEEEECCCCcEEEE
Q 004404 567 ---------LDDVLDLSWSKS-QHLLSSS---------------------------------MDKTVRLWHLSSKTCLKI 603 (755)
Q Consensus 567 ---------~~~V~~L~~spd-~~LaSgs---------------------------------~DgtVrLWDl~t~~~~~~ 603 (755)
...+.++.|+|+ .+|++++ .+..|++||+.+++....
T Consensus 171 ~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~ 250 (706)
T 2z3z_A 171 YGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL 250 (706)
T ss_dssp ESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC
T ss_pred cccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee
Confidence 233588999999 6788777 447899999999887665
Q ss_pred e---ecCCceEEEEEeeCCCcEEEEEECCC-----cEEEEECCCC-cEEEec--cCCC---CEEEEEEcc--CCCEEEEE
Q 004404 604 F---SHSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPER-QVVDWN--DLHE---MVTAACYTP--DGQGALVG 667 (755)
Q Consensus 604 ~---~h~~~VtsVafsP~dg~~LaSgS~Dg-----tVrIWDl~t~-~~v~~~--~~~~---~VtsvafSP--dG~~LasG 667 (755)
. .|...+.+++|+| |+++|++++.++ .|++||+.++ ...... .... .+..++|+| +|++|+++
T Consensus 251 ~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~ 329 (706)
T 2z3z_A 251 QTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS 329 (706)
T ss_dssp CCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred ccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence 5 3667899999999 999999988776 8999999998 443332 1222 246789999 99999999
Q ss_pred ECCCcEEEEECC-CCeeeeccccccccccccCCCCCeEE-EEEccCCCeEEEEEECCC----cEEEEEC-CcceEEeecC
Q 004404 668 SYKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITG-FQFAPGSSSEVLVTSADS----RIRVVDG-IDLVHKFKGE 740 (755)
Q Consensus 668 s~DG~I~lwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vts-l~fsPdg~~~L~sgs~Dg----~IrVWD~-~~ll~~~~GH 740 (755)
..++.++||.+. ++.....+ ..|...+.. ++|+|+++.+++++..++ .|..||. ...+..+. |
T Consensus 330 ~~~g~~~l~~~~~~~~~~~~l---------~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~ 399 (706)
T 2z3z_A 330 RRDGWNHLYLYDTTGRLIRQV---------TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-P 399 (706)
T ss_dssp CTTSSCEEEEEETTSCEEEEC---------CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-C
T ss_pred ccCCccEEEEEECCCCEEEec---------CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc-C
Confidence 999999999876 44433322 256677877 799999984445555555 6667773 22244443 6
Q ss_pred CccEEEEEEEE
Q 004404 741 NYVQYMVCIVL 751 (755)
Q Consensus 741 ~~~V~sv~fs~ 751 (755)
...+..++|+|
T Consensus 400 ~~~~~~~~~sp 410 (706)
T 2z3z_A 400 ESGMHRTQLSP 410 (706)
T ss_dssp SSSEEEEEECT
T ss_pred CCceEEEEECC
Confidence 66677777753
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.74 E-value=4.2e-16 Score=184.11 Aligned_cols=282 Identities=13% Similarity=0.160 Sum_probs=179.4
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcC-----Cceeeeeeccccc----
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE-----SERKGELLEKQED---- 500 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t-----~~~~~~l~~~~~~---- 500 (755)
++.|++|+..+++.. .+..|...+.+++|+|||++||++ .|+.|++|++.+ ++...........
T Consensus 100 ~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 100 QGGLVGFDMLARKVT------YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp TTEEEEEETTTTEEE------EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred CCEEEEEECCCCceE------EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 489999999866532 234577789999999999999995 679999999987 6543322110000
Q ss_pred -----CccccEEEeecCCCCceeccccCCCc-eeeec---ccc---cccc--cccc-cCcccccceeeecCCCceEEec-
Q 004404 501 -----GHLNMLLLANGSPEPTSLSPKHLDNH-LEKKR---RGR---SINR--KSLS-LDHMVVPETVFALSDKPICSFQ- 564 (755)
Q Consensus 501 -----~~~~~v~~v~~s~dg~~l~~~s~d~~-i~~~~---~~~---~~~~--~s~s-~d~~~~~~~v~~~s~k~i~~l~- 564 (755)
.....+..+.|+|++..++....+.. +.... ... .... .... .......-.+|++.......+.
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 00011467889999998887652211 00000 000 0000 0000 0000011134555444333332
Q ss_pred --cCCCCEEEEEecCC-cEEEEEeCCC-----cEEEEECCCC-cEEEEee--cCC---ceEEEEEee-CCCcEEEEEECC
Q 004404 565 --GHLDDVLDLSWSKS-QHLLSSSMDK-----TVRLWHLSSK-TCLKIFS--HSD---YVTCIQFNP-VDDRYFISGSLD 629 (755)
Q Consensus 565 --gH~~~V~~L~~spd-~~LaSgs~Dg-----tVrLWDl~t~-~~~~~~~--h~~---~VtsVafsP-~dg~~LaSgS~D 629 (755)
.|...+..++|+|+ .+|++++.++ .|++||+.++ .....+. +.. .+..++|+| .++++|+++..|
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 56778999999999 5688877776 9999999998 4433332 332 346789998 256789999999
Q ss_pred CcEEEEECC-CCcEE-EeccCCCCEEE-EEEccCCCEEEEEECC-C----cEEEEECCCCeeeeccccccccccccCCCC
Q 004404 630 AKVRIWSIP-ERQVV-DWNDLHEMVTA-ACYTPDGQGALVGSYK-G----SCHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (755)
Q Consensus 630 gtVrIWDl~-t~~~v-~~~~~~~~Vts-vafSPdG~~LasGs~D-G----~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (755)
+.++||.+. ++..+ .+..+...+.. ++|+|+|+.|+.++.+ + .|+.||+.++..... .|..
T Consensus 333 g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l-----------~~~~ 401 (706)
T 2z3z_A 333 GWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL-----------TPES 401 (706)
T ss_dssp SSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES-----------CCSS
T ss_pred CccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec-----------cCCC
Confidence 999999875 44444 44455566776 8999999988775544 4 677778777653321 3566
Q ss_pred CeEEEEEccCCCeEEEEE-ECC---CcEEEEEC
Q 004404 702 KITGFQFAPGSSSEVLVT-SAD---SRIRVVDG 730 (755)
Q Consensus 702 ~Vtsl~fsPdg~~~L~sg-s~D---g~IrVWD~ 730 (755)
.+..++|+|+|+ +|+.+ +.+ +.|++||.
T Consensus 402 ~~~~~~~spdg~-~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 402 GMHRTQLSPDGS-AIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp SEEEEEECTTSS-EEEEEEECSSCSCEEEEEES
T ss_pred ceEEEEECCCCC-EEEEEecCCCCCcEEEEEEC
Confidence 799999999998 45554 443 56999993
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.74 E-value=5.4e-17 Score=167.29 Aligned_cols=252 Identities=10% Similarity=0.014 Sum_probs=169.2
Q ss_pred cccCCCCCccccccCCCCCCccccccCCcccccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCCC
Q 004404 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (755)
Q Consensus 351 ~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~d 430 (755)
..+++.|++|. +|+..++..... . .|...+..+++++ ++..+++ +. +
T Consensus 15 ~~~~~~~~~i~-~~d~~~~~~~~~-~-~~~~~v~~~~~sp----------------------------dg~~l~~-~~-~ 61 (297)
T 2ojh_A 15 GPGGSMRSSIE-IFNIRTRKMRVV-W-QTPELFEAPNWSP----------------------------DGKYLLL-NS-E 61 (297)
T ss_dssp ---CCCCEEEE-EEETTTTEEEEE-E-EESSCCEEEEECT----------------------------TSSEEEE-EE-T
T ss_pred cCCCCcceeEE-EEeCCCCceeee-c-cCCcceEeeEECC----------------------------CCCEEEE-Ec-C
Confidence 34567889999 999877653321 1 2333344444443 3333333 22 6
Q ss_pred cEEEEeeCCC-CcccceeeeeEeecc-cCCEEEEEEcCCCCEEEEEE--CCCcEEEEeCc--CCceeeeeecccccCccc
Q 004404 431 VRVRQYGKSC-KDLTALYKCQEIQAH-NGSIWSIKFSLDGRYLASAG--EDCVIHVWQVV--ESERKGELLEKQEDGHLN 504 (755)
Q Consensus 431 g~Vriwd~~~-~~~~~~~~~q~l~gH-~~~I~sI~fSpdg~~LaTgs--~DGtVrVWdl~--t~~~~~~l~~~~~~~~~~ 504 (755)
+.|++|+... ++...+ +.+| ...|.+++|+|++++|++++ .++.++||.+. +++ ...+. ...
T Consensus 62 ~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~------~~~ 129 (297)
T 2ojh_A 62 GLLYRLSLAGDPSPEKV-----DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT------KNL 129 (297)
T ss_dssp TEEEEEESSSCCSCEEC-----CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC------SSS
T ss_pred CeEEEEeCCCCCCceEe-----ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee------cCC
Confidence 7999999987 554322 2344 47889999999999999999 44566666654 332 22221 112
Q ss_pred cEEEeecCCCCceec-cccCCCceeeecccccccccccccCcccccceeee--cCCCceEEeccCCCCEEEEEecCC-cE
Q 004404 505 MLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA--LSDKPICSFQGHLDDVLDLSWSKS-QH 580 (755)
Q Consensus 505 ~v~~v~~s~dg~~l~-~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~--~s~k~i~~l~gH~~~V~~L~~spd-~~ 580 (755)
.+..+.++|++..++ +...++.+ .+|. ........+..|...+.+++|+|+ ..
T Consensus 130 ~~~~~~~spdg~~l~~~~~~~~~~-----------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 130 PSYWHGWSPDGKSFTYCGIRDQVF-----------------------DIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRW 186 (297)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEE-----------------------EEEEEETTTCCEEECCCSSSCEEEEEECTTSSE
T ss_pred CccceEECCCCCEEEEEECCCCce-----------------------EEEEEECCCCcceEcccCCCccccceECCCCCE
Confidence 367789999998776 44333332 2222 333455667778889999999998 45
Q ss_pred EEEEe-CCCcEEEEECC-CCcEEEEee-cCCceEEEEEeeCCCcEEEEEECC-----------CcEEEEECCCCcEEE--
Q 004404 581 LLSSS-MDKTVRLWHLS-SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLD-----------AKVRIWSIPERQVVD-- 644 (755)
Q Consensus 581 LaSgs-~DgtVrLWDl~-t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~D-----------gtVrIWDl~t~~~v~-- 644 (755)
|+.++ .++.++||++. .+..+..+. |...+.+++|+| ++++|++++.+ +.|.+||+.+++...
T Consensus 187 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 187 IYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred EEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 66555 58999999886 444555554 778899999999 99999888776 569999999876543
Q ss_pred -eccCCCCEEEEEEccCCCEEEEEECCC
Q 004404 645 -WNDLHEMVTAACYTPDGQGALVGSYKG 671 (755)
Q Consensus 645 -~~~~~~~VtsvafSPdG~~LasGs~DG 671 (755)
...+...+..++|+|+|++|++++.+.
T Consensus 266 ~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 266 DLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccCCCCcccccceECCCCCEEEEEEecc
Confidence 235667899999999999999877653
No 150
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.74 E-value=3.7e-16 Score=165.67 Aligned_cols=254 Identities=13% Similarity=0.151 Sum_probs=160.7
Q ss_pred ecCCCcEEEEeCCCcEEEEeeCC--CCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC-CCcEEEEeCcCC---ce
Q 004404 417 TDDSQDVSFHGQERVRVRQYGKS--CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVES---ER 490 (755)
Q Consensus 417 ~~ds~~~l~sg~~dg~Vriwd~~--~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~-DGtVrVWdl~t~---~~ 490 (755)
.+++..+++.+..++.|.+|++. .+++. ....+..+. .+..++|+|+|++|++++. ++.|.+|++..+ +.
T Consensus 46 spdg~~l~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 121 (343)
T 1ri6_A 46 SPDKRYLYVGVRPEFRVLAYRIAPDDGALT---FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 121 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEE---EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred CCCCCEEEEeecCCCeEEEEEecCCCCcee---eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence 34444445555556999999986 33332 223344444 7899999999998877765 889999999522 22
Q ss_pred eeeeecccccCccccEEEeecCCCCceecccc-CCCceeeecccccccccccccCcccccceeeecCC-CceE-----Ee
Q 004404 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPIC-----SF 563 (755)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s-~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~-k~i~-----~l 563 (755)
...+ .....+..+.++|++..+++.. .++.+. +|++.. ..+. .+
T Consensus 122 ~~~~------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~-----------------------~~d~~~~~~~~~~~~~~~ 172 (343)
T 1ri6_A 122 VDVV------EGLDGCHSANISPDNRTLWVPALKQDRIC-----------------------LFTVSDDGHLVAQDPAEV 172 (343)
T ss_dssp EEEE------CCCTTBCCCEECTTSSEEEEEEGGGTEEE-----------------------EEEECTTSCEEEEEEEEE
T ss_pred cccc------cCCCCceEEEECCCCCEEEEecCCCCEEE-----------------------EEEecCCCceeeeccccc
Confidence 2221 1122356778899987666554 444442 222221 1111 22
Q ss_pred cc-CCCCEEEEEecCC-cEEEEE-eCCCcEEEEECCC--CcE--EEEee-------cCCceEEEEEeeCCCcEEE-EEEC
Q 004404 564 QG-HLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSS--KTC--LKIFS-------HSDYVTCIQFNPVDDRYFI-SGSL 628 (755)
Q Consensus 564 ~g-H~~~V~~L~~spd-~~LaSg-s~DgtVrLWDl~t--~~~--~~~~~-------h~~~VtsVafsP~dg~~La-SgS~ 628 (755)
.. ....+..++|+|+ .+|+++ ..++.|++|++.. ++. ...+. ....+..++|+| ++++|+ ++..
T Consensus 173 ~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~ 251 (343)
T 1ri6_A 173 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRT 251 (343)
T ss_dssp ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETT
T ss_pred ccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecC
Confidence 22 2347889999998 445544 4789999999953 432 22222 124677899999 887776 4557
Q ss_pred CCcEEEEECC--CC--cEEEeccCCCCEEEEEEccCCCEEEEEE-CCCcEEEE--ECCCCeeeeccccccccccccCCCC
Q 004404 629 DAKVRIWSIP--ER--QVVDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLY--NTSENKLQQKSPINLQNKKKRSHQR 701 (755)
Q Consensus 629 DgtVrIWDl~--t~--~~v~~~~~~~~VtsvafSPdG~~LasGs-~DG~I~lw--Dl~~~~~~~~~~i~~~~~~~~~h~~ 701 (755)
++.|.+||+. ++ +.+........+..++|+|+|++|++++ .++.|.+| |..++++.....+. . ..
T Consensus 252 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~-------~-g~ 323 (343)
T 1ri6_A 252 ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA-------V-GQ 323 (343)
T ss_dssp TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE-------C-SS
T ss_pred CCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccc-------c-CC
Confidence 9999999998 33 3444444444588999999999999888 57999999 55566554332211 1 23
Q ss_pred CeEEEEEccCC
Q 004404 702 KITGFQFAPGS 712 (755)
Q Consensus 702 ~Vtsl~fsPdg 712 (755)
...+++|.|+.
T Consensus 324 ~p~~i~~~~~~ 334 (343)
T 1ri6_A 324 GPMWVVVNAHE 334 (343)
T ss_dssp SCCEEEEEEEC
T ss_pred CCeeEEEEccc
Confidence 45667777654
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=7.2e-17 Score=171.82 Aligned_cols=236 Identities=9% Similarity=0.050 Sum_probs=167.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceec-cccCCCceeeeccccccccc
Q 004404 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRK 539 (755)
Q Consensus 461 sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~-~~s~d~~i~~~~~~~~~~~~ 539 (755)
.+++++++.++++++.++.|.+||+.+++....+... .......+.++|++..++ +...++.+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~s~dg~~~~v~~~~~~~i------------ 67 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP----DKFGPGTAMMAPDNRTAYVLNNHYGDI------------ 67 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS----SCCSSCEEEECTTSSEEEEEETTTTEE------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC----CCCCCceeEECCCCCEEEEEeCCCCcE------------
Confidence 4578889999999999999999999988776665321 111244677889887543 43333433
Q ss_pred ccccCcccccceeeec-CCCceEEeccC------CCCEEEEEecCC-cEEEEEeCC------------CcEEEEECCCC-
Q 004404 540 SLSLDHMVVPETVFAL-SDKPICSFQGH------LDDVLDLSWSKS-QHLLSSSMD------------KTVRLWHLSSK- 598 (755)
Q Consensus 540 s~s~d~~~~~~~v~~~-s~k~i~~l~gH------~~~V~~L~~spd-~~LaSgs~D------------gtVrLWDl~t~- 598 (755)
.+|+. +++.+..+..+ ...+..++|+|+ .+|++++.+ +.|.+||+.++
T Consensus 68 -----------~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 68 -----------YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp -----------EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred -----------EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 22333 23333344322 223778999998 577777755 89999999884
Q ss_pred --cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCC--------------------------
Q 004404 599 --TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE-------------------------- 650 (755)
Q Consensus 599 --~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~-------------------------- 650 (755)
+.+..+.+...+.+++|+| +++ +++++ +.|.+||+.+++++.......
T Consensus 137 ~~~~~~~~~~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 137 EAKPVRTFPMPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp GBCCSEEEECCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ccceeeeccCCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 3345556666799999999 888 55554 449999999888765433221
Q ss_pred -------------------------------------------CEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 651 -------------------------------------------MVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 651 -------------------------------------------~VtsvafSP-dG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
.+..++|+| +|++|+++ ++.|++||+.+++....
T Consensus 213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~ 290 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA 290 (349)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence 345677889 99999988 88999999999887665
Q ss_pred cccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecC
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGE 740 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH 740 (755)
+. ....+.+++|+|+++ +|++++.++.|++|| .++.+..++..
T Consensus 291 ~~----------~~~~~~~~~~s~dg~-~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 291 AN----------LDHTYYCVAFDKKGD-KLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EE----------CSSCCCEEEECSSSS-CEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred Ec----------CCCCccceEECCCCC-EEEEecCCCeEEEEeccccceeeeeecC
Confidence 42 123467899999998 577788889999999 46778877765
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.74 E-value=2e-15 Score=163.18 Aligned_cols=296 Identities=9% Similarity=0.031 Sum_probs=175.9
Q ss_pred CCCcEEEEeeC--CCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECC----CcEEEEeCcCC-ceeeeeeccccc
Q 004404 428 QERVRVRQYGK--SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----CVIHVWQVVES-ERKGELLEKQED 500 (755)
Q Consensus 428 ~~dg~Vriwd~--~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~D----GtVrVWdl~t~-~~~~~l~~~~~~ 500 (755)
..++.|.+|.+ .++++..+. .+ |...+..|+|+|||++|++++.+ +.|.+|++... .....+... .
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~---~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~- 96 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLS---DA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-K- 96 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEE---EE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-E-
T ss_pred CCCCCEEEEEEeCCCCCEEEee---cc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-c-
Confidence 34567777765 444443322 22 67788889999999999999986 79999998663 222222111 1
Q ss_pred CccccEEEeecCCCCceeccc-cCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCc
Q 004404 501 GHLNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ 579 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~-s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~ 579 (755)
.+......+++ ++..++.. ..++.+..+......... .........+........+...+.+++|+|++
T Consensus 97 ~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 97 TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALL--------PASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBC--------SCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCc--------ccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 11112223333 55544443 334444333322100000 00000000110000011234457899999994
Q ss_pred -EEEEEe-CCCcEEEEECCCCc-------E-------EEEeecCCceEEEEEeeCCCcEEEEEE-CCCcEEEEECCCCcE
Q 004404 580 -HLLSSS-MDKTVRLWHLSSKT-------C-------LKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQV 642 (755)
Q Consensus 580 -~LaSgs-~DgtVrLWDl~t~~-------~-------~~~~~h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWDl~t~~~ 642 (755)
+|+++. .++.|++|++.... . ...+.+...+..++|+| ++++|+++. .++.|.+|++.++++
T Consensus 167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 167 KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEE
T ss_pred CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCce
Confidence 455554 58999999887543 1 12223566789999999 999887777 689999999987765
Q ss_pred EEe--c----cCCCCEEEEEEccCCCEEEEEECC--CcEEEEECC--CCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 643 VDW--N----DLHEMVTAACYTPDGQGALVGSYK--GSCHLYNTS--ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 643 v~~--~----~~~~~VtsvafSPdG~~LasGs~D--G~I~lwDl~--~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
... . .+...+..++|+|||++|+++..+ +.|.+|++. ++++.....+ .. ...+..++|+|+|
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~-------~~-g~~~~~~~~spdg 317 (361)
T 3scy_A 246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ-------LT-GIHPRNFIITPNG 317 (361)
T ss_dssp EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE-------EC-SSCCCEEEECTTS
T ss_pred EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe-------cC-CCCCceEEECCCC
Confidence 321 1 122457899999999999887665 899999996 4443322111 12 3567899999999
Q ss_pred CeEEEEEE-CCCcEEEEE----CCcceEEe-ecCCccEEEEEEE
Q 004404 713 SSEVLVTS-ADSRIRVVD----GIDLVHKF-KGENYVQYMVCIV 750 (755)
Q Consensus 713 ~~~L~sgs-~Dg~IrVWD----~~~ll~~~-~GH~~~V~sv~fs 750 (755)
+ +|++++ .++.|.+|+ ++++.... ..+...+.++.|.
T Consensus 318 ~-~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 318 K-YLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp C-EEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred C-EEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 8 676666 679999965 34443332 1233456666664
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.73 E-value=7.1e-17 Score=170.72 Aligned_cols=273 Identities=7% Similarity=-0.008 Sum_probs=180.5
Q ss_pred cccCCCCCccccccCCCCCCccccccCCccc-ccceeEEeeccccccccCccccCCccCCCceeeeeecCCCcEEEEeCC
Q 004404 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK-SIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (755)
Q Consensus 351 ~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~-~v~sv~~s~~g~~~~~~~~~~~~~~~~g~~~~vs~~~ds~~~l~sg~~ 429 (755)
+++++.|++|. +||..+++.......+... .. ..+....++..++++...
T Consensus 4 ~v~~~~~~~v~-~~d~~~~~~~~~~~~~~~~~~~----------------------------~~~~~s~dg~~l~v~~~~ 54 (337)
T 1pby_B 4 ILAPARPDKLV-VIDTEKMAVDKVITIADAGPTP----------------------------MVPMVAPGGRIAYATVNK 54 (337)
T ss_dssp EEEEETTTEEE-EEETTTTEEEEEEECTTCTTCC----------------------------CCEEECTTSSEEEEEETT
T ss_pred EEEcCCCCeEE-EEECCCCcEEEEEEcCCCCCCc----------------------------cceEEcCCCCEEEEEeCC
Confidence 45677889999 9999877544333211100 01 223333455555667778
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEE------------CCCcEEEEeCcCCceeeeeecc
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG------------EDCVIHVWQVVESERKGELLEK 497 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs------------~DGtVrVWdl~t~~~~~~l~~~ 497 (755)
++.|.+|+..+++............|...+..++|+|+|++|+++. .++.|.+||+.+++....+..
T Consensus 55 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~- 133 (337)
T 1pby_B 55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA- 133 (337)
T ss_dssp TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence 8999999998766433222100000233677899999999999886 679999999988776655421
Q ss_pred cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEec
Q 004404 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~s 576 (755)
...+..+.++|++..++.. ++.+. +|+. +++.+..+..+.. ...+.|+
T Consensus 134 -----~~~~~~~~~s~dg~~l~~~--~~~i~-----------------------~~d~~~~~~~~~~~~~~~-~~~~~~s 182 (337)
T 1pby_B 134 -----PRQITMLAWARDGSKLYGL--GRDLH-----------------------VMDPEAGTLVEDKPIQSW-EAETYAQ 182 (337)
T ss_dssp -----CSSCCCEEECTTSSCEEEE--SSSEE-----------------------EEETTTTEEEEEECSTTT-TTTTBCC
T ss_pred -----CCCcceeEECCCCCEEEEe--CCeEE-----------------------EEECCCCcEeeeeecccc-CCCceeC
Confidence 1224456788998866665 22332 2222 1222233332220 0012556
Q ss_pred CCc-EEEEEe-CCC-----------------------cEEEEECCCCcEEEEe---ecCCceEEEEEeeCCCcEEEEEEC
Q 004404 577 KSQ-HLLSSS-MDK-----------------------TVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDDRYFISGSL 628 (755)
Q Consensus 577 pd~-~LaSgs-~Dg-----------------------tVrLWDl~t~~~~~~~---~h~~~VtsVafsP~dg~~LaSgS~ 628 (755)
|++ .++..+ .++ .|.+||+.+++.. .+ .+...+.+++|+| ++++|+++
T Consensus 183 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~-dg~~l~~~-- 258 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNP-AKTRAFGA-- 258 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECT-TSSEEEEE--
T ss_pred CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECC-CCCEEEEe--
Confidence 652 222222 122 5799999998875 33 2667889999999 99998888
Q ss_pred CCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccc
Q 004404 629 DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 629 DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
++.|.+||+.+++.+........+.+++|+|+|++|++++.++.|++||+.+++.+..+.
T Consensus 259 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 259 YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 799999999999888776667788999999999999999999999999999998776543
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=2e-16 Score=182.95 Aligned_cols=260 Identities=12% Similarity=0.076 Sum_probs=177.8
Q ss_pred eeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeeccc-CCEEEEEEcCCCCEEEEEEC---CCcEEEEeCcC--C
Q 004404 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLASAGE---DCVIHVWQVVE--S 488 (755)
Q Consensus 415 s~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~-~~I~sI~fSpdg~~LaTgs~---DGtVrVWdl~t--~ 488 (755)
..+.|++.+++.+..++++++|++..++. +.+..|. ..|..++|+|| +++++++. +...+||.+.. .
T Consensus 28 ~~~~DG~~la~~s~~~g~~~lw~~~~g~~------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 28 QGVVDGDKLLVVGFSEGSVNAYLYDGGET------VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEETTEE------EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred ecCCCCCeEEEEEccCCceeEEEEcCCCc------EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence 33444555556666689999999754443 2344455 68999999999 88888875 56677776644 2
Q ss_pred ceeeeeecccccCccccEEEeecCCCCc--eeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccC
Q 004404 489 ERKGELLEKQEDGHLNMLLLANGSPEPT--SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566 (755)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~s~dg~--~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH 566 (755)
.....+.. ..+ .....+++++. .++....+.. .+|++.......+..+
T Consensus 101 g~~~~l~~--~~~----~~~~~~s~dg~~~~~~s~~~~~~------------------------~l~d~~~g~~~~l~~~ 150 (582)
T 3o4h_A 101 GEEQRLEA--VKP----MRILSGVDTGEAVVFTGATEDRV------------------------ALYALDGGGLRELARL 150 (582)
T ss_dssp TCCEECTT--SCS----BEEEEEEECSSCEEEEEECSSCE------------------------EEEEEETTEEEEEEEE
T ss_pred CccccccC--CCC----ceeeeeCCCCCeEEEEecCCCCc------------------------eEEEccCCcEEEeecC
Confidence 22222211 111 12346666653 3433322222 1333333333334334
Q ss_pred CCCEEEEEecCC-cEEEEEeCC----CcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCC--cEEEEECCC
Q 004404 567 LDDVLDLSWSKS-QHLLSSSMD----KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIPE 639 (755)
Q Consensus 567 ~~~V~~L~~spd-~~LaSgs~D----gtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~Dg--tVrIWDl~t 639 (755)
.. .+++|+|+ .+|++++.+ +.|++||+.+++......|...+..++|+| |+++|+++..++ +|++||+.+
T Consensus 151 ~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 151 PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTT
T ss_pred CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCC
Confidence 33 78999999 567777777 789999999988776656889999999999 999999888898 899999999
Q ss_pred CcEEEeccCCCCEEEEE--------EccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccC
Q 004404 640 RQVVDWNDLHEMVTAAC--------YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (755)
Q Consensus 640 ~~~v~~~~~~~~Vtsva--------fSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd 711 (755)
++...+..+...+..++ |+|||.++++++.++.+++|++ ++... .+...|.+++|+ +
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~------------~~~~~v~~~~~s-d 292 (582)
T 3o4h_A 228 GSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE------------APQGNHGRVVLW-R 292 (582)
T ss_dssp CCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC------------CCSSEEEEEEEE-T
T ss_pred CcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec------------cCCCceEEEEec-C
Confidence 88874444455555566 9999999999999999999999 55443 223568899999 7
Q ss_pred CCeEEEEEECCC---cEEEEEC
Q 004404 712 SSSEVLVTSADS---RIRVVDG 730 (755)
Q Consensus 712 g~~~L~sgs~Dg---~IrVWD~ 730 (755)
+. ++++++.+. .|.+||.
T Consensus 293 g~-~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 293 GK-LVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp TE-EEEEEEETTEEEEEEEETT
T ss_pred CE-EEEEEcCCCCCCeEEEEcC
Confidence 76 677777764 4677774
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.72 E-value=2.5e-15 Score=161.18 Aligned_cols=244 Identities=10% Similarity=0.073 Sum_probs=159.2
Q ss_pred eecCCCcEEEEe--CCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEE-CCCcEEEEeCcCCceee
Q 004404 416 ATDDSQDVSFHG--QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKG 492 (755)
Q Consensus 416 ~~~ds~~~l~sg--~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs-~DGtVrVWdl~t~~~~~ 492 (755)
..+++. +++.. ..++.|++|++..++.. .+..+..|...+..|+|+|||++|++++ .++.|.+|++.......
T Consensus 47 ~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 47 LSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp ECTTCE-EEEEEEETTEEEEEEEEEETTEEE---EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred EccCCe-EEEEEecCCCceEEEEEecCCcEE---EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence 344555 33333 24789999998655433 2334456788899999999999999888 67999999985322211
Q ss_pred eeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEE
Q 004404 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572 (755)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~ 572 (755)
.+. .+..... .+. ...+...+.+
T Consensus 123 ~~~------------~~~~~~~-------------------------------------------~p~--~~~~~~~~~~ 145 (347)
T 3hfq_A 123 LTD------------TVQHSGH-------------------------------------------GPR--PEQDGSHIHY 145 (347)
T ss_dssp EEE------------EEECCCC-------------------------------------------CSS--TTCSSCCEEE
T ss_pred ecc------------eeecCCC-------------------------------------------CCC--ccccCCCceE
Confidence 110 0000000 000 0123446889
Q ss_pred EEecCCcEE-EEEeCCCcEEEEECC-CCcEEEE--ee--cCCceEEEEEeeCCCcEEEE-EECCCcEEEEECCC--CcEE
Q 004404 573 LSWSKSQHL-LSSSMDKTVRLWHLS-SKTCLKI--FS--HSDYVTCIQFNPVDDRYFIS-GSLDAKVRIWSIPE--RQVV 643 (755)
Q Consensus 573 L~~spd~~L-aSgs~DgtVrLWDl~-t~~~~~~--~~--h~~~VtsVafsP~dg~~LaS-gS~DgtVrIWDl~t--~~~v 643 (755)
++|+|++.+ ++...++.|++|++. +++.... +. ....+..++|+| ++++|++ ...++.|.+|++.. ++..
T Consensus 146 ~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 146 TDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence 999998544 445568899999998 5544322 22 334688999999 8886555 56788999999874 5432
Q ss_pred ---EeccCC------CCEEEEEEccCCCEEEE-EECCCcEEEEECCCC-eeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 644 ---DWNDLH------EMVTAACYTPDGQGALV-GSYKGSCHLYNTSEN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 644 ---~~~~~~------~~VtsvafSPdG~~Las-Gs~DG~I~lwDl~~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
...... ..+..++|+|||++|++ ...++.|.+|++... .+.... ....+...+..++|+|+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~-------~~~~~~~~~~~~~~spdg 297 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQ-------QISTEGDFPRDFDLDPTE 297 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEE-------EEECSSSCCCEEEECTTS
T ss_pred EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeE-------EEecCCCCcCeEEECCCC
Confidence 111122 45889999999998855 556899999999732 221111 122455668899999999
Q ss_pred CeEEEEEEC-CCcEEEEE
Q 004404 713 SSEVLVTSA-DSRIRVVD 729 (755)
Q Consensus 713 ~~~L~sgs~-Dg~IrVWD 729 (755)
+ +|++++. ++.|.+|+
T Consensus 298 ~-~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 298 A-FVVVVNQNTDNATLYA 314 (347)
T ss_dssp S-EEEEEETTTTEEEEEE
T ss_pred C-EEEEEEcCCCcEEEEE
Confidence 8 6666665 58999994
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.69 E-value=2.5e-15 Score=161.18 Aligned_cols=247 Identities=13% Similarity=0.117 Sum_probs=161.6
Q ss_pred CcEEEEeeC--CCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC---CCcEEEEeCcCCceeeeeecccccCccc
Q 004404 430 RVRVRQYGK--SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---DCVIHVWQVVESERKGELLEKQEDGHLN 504 (755)
Q Consensus 430 dg~Vriwd~--~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~---DGtVrVWdl~t~~~~~~l~~~~~~~~~~ 504 (755)
+..|.+|.+ .++++..+ ....+...+..|+|+|||+ |++++. ++.|.+|++.+++..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------- 76 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------- 76 (347)
T ss_dssp CCEEEEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-------------
T ss_pred CCCEEEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-------------
Confidence 445555554 34443322 2234567788899999999 555544 689999998543311
Q ss_pred cEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEE
Q 004404 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLS 583 (755)
Q Consensus 505 ~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaS 583 (755)
.+..+..+...+..++|+|+ .+|++
T Consensus 77 ------------------------------------------------------~~~~~~~~~~~p~~~a~spdg~~l~~ 102 (347)
T 3hfq_A 77 ------------------------------------------------------KLNTVVAPGTPPAYVAVDEARQLVYS 102 (347)
T ss_dssp ------------------------------------------------------EEEEEEEESCCCSEEEEETTTTEEEE
T ss_pred ------------------------------------------------------EeeeeecCCCCCEEEEECCCCCEEEE
Confidence 11122234556778999998 56777
Q ss_pred Ee-CCCcEEEEECCC-C--cEEEEeecC----------CceEEEEEeeCCCcEEEEEECCCcEEEEECC-CCcEEEe---
Q 004404 584 SS-MDKTVRLWHLSS-K--TCLKIFSHS----------DYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-ERQVVDW--- 645 (755)
Q Consensus 584 gs-~DgtVrLWDl~t-~--~~~~~~~h~----------~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~-t~~~v~~--- 645 (755)
++ .+++|++|++.. + ..+..+.+. ..+.+++|+| +++++++...++.|++|++. ++++...
T Consensus 103 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~ 181 (347)
T 3hfq_A 103 ANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL 181 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred EeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeE
Confidence 77 689999999963 3 333333322 2488999999 88877777778999999998 5554321
Q ss_pred -ccCCCCEEEEEEccCCCEEEEE-ECCCcEEEEECCC--CeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 646 -NDLHEMVTAACYTPDGQGALVG-SYKGSCHLYNTSE--NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 646 -~~~~~~VtsvafSPdG~~LasG-s~DG~I~lwDl~~--~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
......+..++|+|||++|+++ ..++.|++|++.. +++.....+...... ......+..++|+|+|+.++++...
T Consensus 182 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 182 TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD-YTAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT-CCSCCEEEEEEECTTSCEEEEEEET
T ss_pred EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC-CCCCCcceeEEECCCCCEEEEEeCC
Confidence 2223468899999999977764 5678999999874 544322111100000 0112458899999999844466677
Q ss_pred CCcEEEEECC-----cceEEeecCCccEEEEEEE
Q 004404 722 DSRIRVVDGI-----DLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 722 Dg~IrVWD~~-----~ll~~~~GH~~~V~sv~fs 750 (755)
++.|.+||.. +.+..+..+...+..++|+
T Consensus 261 ~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~s 294 (347)
T 3hfq_A 261 YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLD 294 (347)
T ss_dssp TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEEC
T ss_pred CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEEC
Confidence 9999999932 4566677766667777765
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=186.73 Aligned_cols=364 Identities=12% Similarity=0.010 Sum_probs=213.0
Q ss_pred eecHHHHHHhcCCcHHHHHHHhhcc--cccCCCCCccccccCCCCCCccccccCCccc---ccceeEEeeccccccccCc
Q 004404 326 QLTIEEFEMCVGHSPIVQELMRRQN--VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK---SIRTVASSVTGHKERRSSD 400 (755)
Q Consensus 326 ~lt~~e~~~~~GHs~~V~~l~~~~~--~~sgs~D~tv~~~Wd~~~g~~~~k~k~~~~~---~v~sv~~s~~g~~~~~~~~ 400 (755)
.+|+++.......... ..++++++ ....+.|++|+ +|+..+|+...... .+.. .+.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~s~dg~~~~~~~d~~i~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpD--------- 70 (719)
T 1z68_A 3 ALTLKDILNGTFSYKT-FFPNWISGQEYLHQSADNNIV-LYNIETGQSYTILS-NRTMKSVNASNYGLSPD--------- 70 (719)
T ss_dssp CCCHHHHHHTTTCCCC-CCCEESSSSEEEEECTTSCEE-EEESSSCCEEEEEC-HHHHHTTTCSEEEECTT---------
T ss_pred cccHHHHhcCcccCCC-CccEECCCCeEEEEcCCCCEE-EEEcCCCcEEEEEc-cccccccceeeEEECCC---------
Confidence 3556655444322111 14566666 33344689999 99998876443332 1111 1444444443
Q ss_pred cccCCccCCCceeeeeecCCCcEEEEe--------CCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEE
Q 004404 401 ERDTSSEKGGRRSSSATDDSQDVSFHG--------QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA 472 (755)
Q Consensus 401 ~~~~~~~~g~~~~vs~~~ds~~~l~sg--------~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~La 472 (755)
++.+++.. +.++.|++|++.+++...... + ...+..++|||||++||
T Consensus 71 -------------------g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~---l---~~~~~~~~~SPDG~~la 125 (719)
T 1z68_A 71 -------------------RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE---L---PRPIQYLCWSPVGSKLA 125 (719)
T ss_dssp -------------------SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC---C---CSSBCCEEECSSTTCEE
T ss_pred -------------------CCeEEEEecCceeEEeecceEEEEEECCCCcccccee---c---CcccccceECCCCCEEE
Confidence 33332222 236899999998776511111 1 24688999999999999
Q ss_pred EEECCCcEEEEeCcCCceeeeeecccccCccccE-----------------EEeecCCCCceeccccCCC-ceeeecc--
Q 004404 473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNML-----------------LLANGSPEPTSLSPKHLDN-HLEKKRR-- 532 (755)
Q Consensus 473 Tgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v-----------------~~v~~s~dg~~l~~~s~d~-~i~~~~~-- 532 (755)
++. ++.|++|++.+++..... ..++...+ ..+.|+||+..|+....+. .+.....
T Consensus 126 ~~~-~~~i~~~~~~~g~~~~l~----~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~ 200 (719)
T 1z68_A 126 YVY-QNNIYLKQRPGDPPFQIT----FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY 200 (719)
T ss_dssp EEE-TTEEEEESSTTSCCEECC----CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred EEE-CCeEEEEeCCCCCcEEEe----cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence 986 789999999887654321 11222211 3789999999988765432 1110000
Q ss_pred -ccc--cccccc--c---cCcccccceeeecCCCce---------EEeccCCCCEEEEEecCCcEEEEEeC-C----CcE
Q 004404 533 -GRS--INRKSL--S---LDHMVVPETVFALSDKPI---------CSFQGHLDDVLDLSWSKSQHLLSSSM-D----KTV 590 (755)
Q Consensus 533 -~~~--~~~~s~--s---~d~~~~~~~v~~~s~k~i---------~~l~gH~~~V~~L~~spd~~LaSgs~-D----gtV 590 (755)
... .....+ . .........+|++..... ..+.+|...+..++|+|++.++.... . ..|
T Consensus 201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l 280 (719)
T 1z68_A 201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL 280 (719)
T ss_dssp CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence 000 000000 0 000000113455544322 12346888899999999976554422 2 248
Q ss_pred EEEE----CCCCcEEEEe-----ecCCceE-----EEEEeeCCCcEEEE--EECCC--cEEEEECCCCcEEEeccCCCCE
Q 004404 591 RLWH----LSSKTCLKIF-----SHSDYVT-----CIQFNPVDDRYFIS--GSLDA--KVRIWSIPERQVVDWNDLHEMV 652 (755)
Q Consensus 591 rLWD----l~t~~~~~~~-----~h~~~Vt-----sVafsP~dg~~LaS--gS~Dg--tVrIWDl~t~~~v~~~~~~~~V 652 (755)
++|| +.++++...+ .|...+. .+.|+| |++.|+. ...+| .|.+||+.+++...+..+...+
T Consensus 281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v 359 (719)
T 1z68_A 281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEA 359 (719)
T ss_dssp EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCE
T ss_pred EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCCceEecccCceEE
Confidence 8999 8777665544 3666676 889999 8885543 44555 5777788887766666656678
Q ss_pred EEEEEccCCCEEEEEECC-----CcEEEEECCC--Cee-eeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC--
Q 004404 653 TAACYTPDGQGALVGSYK-----GSCHLYNTSE--NKL-QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-- 722 (755)
Q Consensus 653 tsvafSPdG~~LasGs~D-----G~I~lwDl~~--~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D-- 722 (755)
..+.+. +++.|+..+.+ +.+++|.+.. +.. ...+. ..+.+|...+..+.|+|+++.++++++.+
T Consensus 360 ~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~-----~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~ 433 (719)
T 1z68_A 360 INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT-----CHLRKERCQYYTASFSDYAKYYALVCYGPGI 433 (719)
T ss_dssp EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS-----TTTTTTTBCBEEEEECGGGSSEEEEECCBSS
T ss_pred EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc-----CccCCCCCceEEEEECCCCCEEEEEcCCCCC
Confidence 888877 88888776655 7788888754 321 11111 01123667788999999998555555544
Q ss_pred CcEEEEEC--CcceEEee
Q 004404 723 SRIRVVDG--IDLVHKFK 738 (755)
Q Consensus 723 g~IrVWD~--~~ll~~~~ 738 (755)
..+.+||. ++++..+.
T Consensus 434 p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 434 PISTLHDGRTDQEIKILE 451 (719)
T ss_dssp CEEEEECSSSCCEEEEEE
T ss_pred CeEEEEECCCCCEEEEee
Confidence 46888983 55444443
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.68 E-value=2.2e-15 Score=160.28 Aligned_cols=249 Identities=8% Similarity=0.004 Sum_probs=164.7
Q ss_pred CCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeeccc-CCEEEEEEcCCCCEEE-EEECCCcEEEEeCcCCceeeeeec
Q 004404 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 419 ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~-~~I~sI~fSpdg~~La-Tgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
....+++++..++.|++||..+++... .+..+. ..+..++|+|+|++++ +...++.|.+||+.+++....+..
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYK-----SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEE-----EEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEE-----EEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 344567788889999999998765432 233232 2578999999998655 555789999999998876655431
Q ss_pred cccc-CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC----CceEEeccCCCCEE
Q 004404 497 KQED-GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD----KPICSFQGHLDDVL 571 (755)
Q Consensus 497 ~~~~-~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~----k~i~~l~gH~~~V~ 571 (755)
.... .....+..+.++|++..++.+..+......... .. ... -.+|++.. +.+..+.. ...+.
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~-------~~-~~~---i~~~d~~~~~~~~~~~~~~~-~~~~~ 151 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV-------VK-PPR---LEVFSTADGLEAKPVRTFPM-PRQVY 151 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE-------EC-CCE---EEEEEGGGGGGBCCSEEEEC-CSSCC
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccc-------cC-CCe---EEEEECCCccccceeeeccC-CCccc
Confidence 1100 001224567889999888776533000000000 00 000 02222221 22233333 33588
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCC-------------------------------------------
Q 004404 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSD------------------------------------------- 608 (755)
Q Consensus 572 ~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~------------------------------------------- 608 (755)
+++|+|++.+++++. .|++||+.+++.+..+....
T Consensus 152 ~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 229 (349)
T 1jmx_B 152 LMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 229 (349)
T ss_dssp CEEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred ceeECCCCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence 999999966666544 49999999988877664211
Q ss_pred --------------------------ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCC
Q 004404 609 --------------------------YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQ 662 (755)
Q Consensus 609 --------------------------~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~ 662 (755)
.+..++|+|.++++++++ ++.|.+||+.+++.+........+..++|+|+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGD 307 (349)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSS
T ss_pred ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCC
Confidence 234556666456777777 8899999999999887666666788999999999
Q ss_pred EEEEEECCCcEEEEECCCCeeeeccc
Q 004404 663 GALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 663 ~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
+|++++.++.|++||+.+++.+..+.
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCeEEEEeccccceeeeee
Confidence 99998889999999999988876543
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.67 E-value=4.5e-14 Score=153.57 Aligned_cols=252 Identities=11% Similarity=0.098 Sum_probs=157.0
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCc-CCceeeeeecccccCccccEEEeecCCCCce--eccccCCCceeeec
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPEPTS--LSPKHLDNHLEKKR 531 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~-t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~--l~~~s~d~~i~~~~ 531 (755)
+...+..++|+|+|++|++++.+ .|.+|++. +++..... .....+. ...+.++|++.. +++...+. +....
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~g~---~~~~~~spdg~~l~~~~~~~~~-~~~~~ 111 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIGGH---PRANDADTNTRAIFLLAAKQPP-YAVYA 111 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECCSS---GGGGCTTSCCEEEEEEECSSTT-CCEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecCCC---CccEEECCCCCEEEEEEecCCc-ceecc
Confidence 44568899999999999999988 99999997 65543221 1111121 224788999883 33332110 00000
Q ss_pred ccccccccccccCcccccceeeecC--CCceEEec----cCCCCEEEEEecCCc-EEEEEeC-CCcEEEEECC-CCcEE-
Q 004404 532 RGRSINRKSLSLDHMVVPETVFALS--DKPICSFQ----GHLDDVLDLSWSKSQ-HLLSSSM-DKTVRLWHLS-SKTCL- 601 (755)
Q Consensus 532 ~~~~~~~~s~s~d~~~~~~~v~~~s--~k~i~~l~----gH~~~V~~L~~spd~-~LaSgs~-DgtVrLWDl~-t~~~~- 601 (755)
.. ....+... .+|.+. ++....+. .+...+.+++|+|++ +|+++.. ++.|++|++. +++..
T Consensus 112 ~~------~~~~~g~v---~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~ 182 (365)
T 1jof_A 112 NP------FYKFAGYG---NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL 182 (365)
T ss_dssp EE------ESSSCCEE---EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred ce------eecCCceE---EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE
Confidence 00 00000000 233332 22222222 255679999999994 5666654 6899999998 67653
Q ss_pred -EEee---cCCceEEEEEeeCCCcEEEEEEC-CCcEEEEECC--CCcEE------EeccCC----C-------CEEEEE-
Q 004404 602 -KIFS---HSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIP--ERQVV------DWNDLH----E-------MVTAAC- 656 (755)
Q Consensus 602 -~~~~---h~~~VtsVafsP~dg~~LaSgS~-DgtVrIWDl~--t~~~v------~~~~~~----~-------~Vtsva- 656 (755)
..+. |...+..++|+| ++++|++++. +++|.+|++. ++++. ...... . .+..++
T Consensus 183 ~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 183 VGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp EEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred eeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 2333 356799999999 9998888775 7899999765 55542 111111 2 588999
Q ss_pred EccCCCEEEEEECCC------cEEEEECC-CCeeeeccccccccccccCCCCCeEEEEEcc---CCCeEEEEEEC-CCcE
Q 004404 657 YTPDGQGALVGSYKG------SCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITGFQFAP---GSSSEVLVTSA-DSRI 725 (755)
Q Consensus 657 fSPdG~~LasGs~DG------~I~lwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsP---dg~~~L~sgs~-Dg~I 725 (755)
|+|||++|+++..+. .|.+|++. ++++...... ...+...+..++|+| +|+ +|++++. +++|
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~------~~~~~~~~~~~a~sp~~~dg~-~l~v~~~~~~~v 334 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL------SPTPTSGGHSNAVSPCPWSDE-WMAITDDQEGWL 334 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE------EECSSCCTTCCCEEECTTCTT-EEEEECSSSCEE
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee------eecCCCCcccceecCCCcCCC-EEEEEEcCCCeE
Confidence 999999998876432 89999996 5554321100 112334456789999 787 6777765 5899
Q ss_pred EEEE
Q 004404 726 RVVD 729 (755)
Q Consensus 726 rVWD 729 (755)
+||+
T Consensus 335 ~v~~ 338 (365)
T 1jof_A 335 EIYR 338 (365)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.66 E-value=8.4e-15 Score=159.07 Aligned_cols=289 Identities=10% Similarity=-0.022 Sum_probs=175.5
Q ss_pred eecCCCcEEEEeCCCc--EEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeee
Q 004404 416 ATDDSQDVSFHGQERV--RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (755)
Q Consensus 416 ~~~ds~~~l~sg~~dg--~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~ 493 (755)
.++|+..+++....++ .|++|+..+++...+ ..+|...+..+.|+|||++|+.++.++.|++||+.+++....
T Consensus 43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-----t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-----TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV 117 (388)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-----CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-----eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee
Confidence 3455555556555455 688888876664433 345666666788999999999999999999999998765443
Q ss_pred eecccccCccccE--EEeecCCCCceeccccCCCceeeeccccc---ccccccccCcccccceeeecCCCceEEeccCCC
Q 004404 494 LLEKQEDGHLNML--LLANGSPEPTSLSPKHLDNHLEKKRRGRS---INRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (755)
Q Consensus 494 l~~~~~~~~~~~v--~~v~~s~dg~~l~~~s~d~~i~~~~~~~~---~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~ 568 (755)
+. .+...+ .....++++..++.......-. ...... ......... ....++++.......+..+..
T Consensus 118 ~~-----~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~l~~~d~~~g~~~~l~~~~~ 188 (388)
T 3pe7_A 118 YQ-----VPAEWVGYGTWVANSDCTKLVGIEIRREDW-VPLTDWKKFHEFYFTKPC---CRLMRVDLKTGESTVILQENQ 188 (388)
T ss_dssp EE-----CCTTEEEEEEEEECTTSSEEEEEEEEGGGC-CCCCSHHHHHHHGGGCCC---EEEEEEETTTCCEEEEEEESS
T ss_pred ee-----chhhcccccceeECCCCCeeccccccCccc-ccccccchhhhhhccCCc---ceEEEEECCCCceEEeecCCc
Confidence 21 111112 1223477877765421110000 000000 000000000 011345555555666667778
Q ss_pred CEEEEEecC-C-cEEEEEeCC------CcEEEEECCCCcEEEEeecC--CceEEEEEeeCCCcEEEEEEC-CC----cEE
Q 004404 569 DVLDLSWSK-S-QHLLSSSMD------KTVRLWHLSSKTCLKIFSHS--DYVTCIQFNPVDDRYFISGSL-DA----KVR 633 (755)
Q Consensus 569 ~V~~L~~sp-d-~~LaSgs~D------gtVrLWDl~t~~~~~~~~h~--~~VtsVafsP~dg~~LaSgS~-Dg----tVr 633 (755)
.+..+.|+| + ..|+....+ ..|.++|+..+.......+. ..+..++|+| |++.|+..+. ++ .|+
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~ 267 (388)
T 3pe7_A 189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIY 267 (388)
T ss_dssp CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEE
T ss_pred cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEE
Confidence 899999999 8 456666653 37888888766554444444 3588899999 8887755443 22 399
Q ss_pred EEECCCCcEEEeccCCCC------EEEEEEccCCCEEEEE---------ECCCcEEEEECCCCeeeeccccccccccccC
Q 004404 634 IWSIPERQVVDWNDLHEM------VTAACYTPDGQGALVG---------SYKGSCHLYNTSENKLQQKSPINLQNKKKRS 698 (755)
Q Consensus 634 IWDl~t~~~v~~~~~~~~------VtsvafSPdG~~LasG---------s~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~ 698 (755)
+||+.+++...+...... ...++|+|||+.|+.. ..+..|++||+.+++..... .
T Consensus 268 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~----------~ 337 (388)
T 3pe7_A 268 SADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA----------R 337 (388)
T ss_dssp EECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE----------E
T ss_pred EEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec----------c
Confidence 999999876543332221 1123799999988864 44668999999988764321 2
Q ss_pred CCC-----------CeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 699 HQR-----------KITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 699 h~~-----------~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
|.. .+..++|+|+|+.+++++..++...||.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 338 HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 222 5778899999985444555677777775
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.65 E-value=1.4e-13 Score=148.64 Aligned_cols=260 Identities=12% Similarity=0.116 Sum_probs=157.0
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEE-CCCcEEEEeCcCCceeeeeecc---c------
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEK---Q------ 498 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs-~DGtVrVWdl~t~~~~~~l~~~---~------ 498 (755)
..+.|.+|++....- .+..+..+..+......+++ ++++|++++ .++.|.+|++........+... .
T Consensus 73 ~~~~v~~~~~~~~~g-~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~ 149 (361)
T 3scy_A 73 DQAAVSAFAFDKEKG-TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDK 149 (361)
T ss_dssp TTCEEEEEEEETTTT-EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCT
T ss_pred CCCcEEEEEEeCCCC-cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCc
Confidence 348999998764211 12223344556667888888 888888777 5789999999765443322110 0
Q ss_pred ccCccccEEEeecCCCCceeccc-cCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~-s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp 577 (755)
.......+..+.++|++..++.. ..+..+..+........... ..+.. .+........+...+..++|+|
T Consensus 150 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~---~~l~~------~~~~~~~~~~~~~~~~~~~~sp 220 (361)
T 3scy_A 150 ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK---EKFLT------KGTPEAFKVAPGSGPRHLIFNS 220 (361)
T ss_dssp TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC---CCCEE------EEEEEEEECCTTCCEEEEEECT
T ss_pred cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc---cceee------cccccceecCCCCCCeEEEEcC
Confidence 01112235678999999855443 33444432221110000000 00000 0000111223445678999999
Q ss_pred Cc-EEEEEe-CCCcEEEEECCCCcEE--EEee----cCCceEEEEEeeCCCcEEEEEECC--CcEEEEECC--CCcE--E
Q 004404 578 SQ-HLLSSS-MDKTVRLWHLSSKTCL--KIFS----HSDYVTCIQFNPVDDRYFISGSLD--AKVRIWSIP--ERQV--V 643 (755)
Q Consensus 578 d~-~LaSgs-~DgtVrLWDl~t~~~~--~~~~----h~~~VtsVafsP~dg~~LaSgS~D--gtVrIWDl~--t~~~--v 643 (755)
++ +++++. .++.|++|++.+++.. ..+. +...+..++|+| ++++|+++..+ +.|.+|++. +++. +
T Consensus 221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~ 299 (361)
T 3scy_A 221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKV 299 (361)
T ss_dssp TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence 94 566666 6899999999877543 3332 335578999999 99988776654 899999985 4553 3
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEE-CCCcEEEE--ECCCCeeeeccccccccccccCCCCCeEEEEEc
Q 004404 644 DWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLY--NTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (755)
Q Consensus 644 ~~~~~~~~VtsvafSPdG~~LasGs-~DG~I~lw--Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (755)
........+..++|+|+|++|++++ .++.|.+| |..++++..... ..+...+++|.|.
T Consensus 300 ~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~--------~~~~~~p~~v~~~ 360 (361)
T 3scy_A 300 GYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK--------DIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC--------CEECSSEEEEEEE
T ss_pred eEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce--------eeeCCCCeEEEEc
Confidence 3333345788999999999999987 57889996 555676654321 1244568888885
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=178.30 Aligned_cols=294 Identities=12% Similarity=0.107 Sum_probs=184.0
Q ss_pred eeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccC---CEEEEEEcCCCCEEEEEEC---------CCcEEE
Q 004404 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG---SIWSIKFSLDGRYLASAGE---------DCVIHV 482 (755)
Q Consensus 415 s~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~---~I~sI~fSpdg~~LaTgs~---------DGtVrV 482 (755)
..++++ .+++. ..++.|++|+..+++...+ +.+|.. .|.+++|||||++||+++. ++.|++
T Consensus 22 ~~s~dg-~~~~~-~~d~~i~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 22 NWISGQ-EYLHQ-SADNNIVLYNIETGQSYTI-----LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp EESSSS-EEEEE-CTTSCEEEEESSSCCEEEE-----ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred EECCCC-eEEEE-cCCCCEEEEEcCCCcEEEE-----EccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 334455 33444 3588999999987764332 334433 4899999999999999876 789999
Q ss_pred EeCcCCcee--eeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCce
Q 004404 483 WQVVESERK--GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI 560 (755)
Q Consensus 483 Wdl~t~~~~--~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i 560 (755)
||+.+++.. ..+ ...+..+.|+|+|..++... +..+..+........ .+ ...+...
T Consensus 95 ~d~~~g~~~~~~~l--------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~------------~l-~~~~~~~ 152 (719)
T 1z68_A 95 YDLSNGEFVRGNEL--------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF------------QI-TFNGREN 152 (719)
T ss_dssp EETTTTEECCSSCC--------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE------------EC-CCCCBTT
T ss_pred EECCCCccccceec--------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE------------EE-ecCCCcC
Confidence 999887652 111 13466789999999888774 333433222110000 00 0001111
Q ss_pred EEeccCCCCE---------EEEEecCC-cEEEEEeCCC----------------------------------cEEEEECC
Q 004404 561 CSFQGHLDDV---------LDLSWSKS-QHLLSSSMDK----------------------------------TVRLWHLS 596 (755)
Q Consensus 561 ~~l~gH~~~V---------~~L~~spd-~~LaSgs~Dg----------------------------------tVrLWDl~ 596 (755)
..+.||...| .+++|+|+ .+|++++.|. +|++||+.
T Consensus 153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~ 232 (719)
T 1z68_A 153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT 232 (719)
T ss_dssp TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence 1122333222 58999999 6788877652 78999999
Q ss_pred CCcEE---EE-----e-ecCCceEEEEEeeCCCcEEEEEECCC----cEEEEE----CCCCcEEEec-----cCCCCEE-
Q 004404 597 SKTCL---KI-----F-SHSDYVTCIQFNPVDDRYFISGSLDA----KVRIWS----IPERQVVDWN-----DLHEMVT- 653 (755)
Q Consensus 597 t~~~~---~~-----~-~h~~~VtsVafsP~dg~~LaSgS~Dg----tVrIWD----l~t~~~v~~~-----~~~~~Vt- 653 (755)
+++.. .. + .|...+..++|+| |++++++....+ .|.+|| +.++++..+. .+...+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 311 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGG 311 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSS
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEcc
Confidence 87652 22 1 2777899999999 887777754332 488899 8777655443 3445555
Q ss_pred ----EEEEccCCCEEEE--EECCC--cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC----
Q 004404 654 ----AACYTPDGQGALV--GSYKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA---- 721 (755)
Q Consensus 654 ----svafSPdG~~Las--Gs~DG--~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~---- 721 (755)
.++|+|||+.|+. ...+| .|++||+.+++... +..+...|..+.+. +++ .|+..+.
T Consensus 312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~----------lt~~~~~v~~~~~~-d~~-~i~~~~~~~~~ 379 (719)
T 1z68_A 312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQ----------ITSGKWEAINIFRV-TQD-SLFYSSNEFEE 379 (719)
T ss_dssp SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEE----------CSCSSSCEEEEEEE-CSS-EEEEEESCGGG
T ss_pred ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEe----------cccCceEEEEEEEE-eCC-EEEEEEecCCC
Confidence 7899999986654 44555 57777877765322 12445568888777 777 4555544
Q ss_pred -CCcEEEEE--C--Cc-ceEEee----cCCccEEEEEEE
Q 004404 722 -DSRIRVVD--G--ID-LVHKFK----GENYVQYMVCIV 750 (755)
Q Consensus 722 -Dg~IrVWD--~--~~-ll~~~~----GH~~~V~sv~fs 750 (755)
++.++||. . +. ....+. +|...+..+.|+
T Consensus 380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s 418 (719)
T 1z68_A 380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFS 418 (719)
T ss_dssp CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEEC
T ss_pred CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEEC
Confidence 48889997 2 32 123333 255566666664
No 163
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.61 E-value=2.1e-13 Score=146.40 Aligned_cols=238 Identities=11% Similarity=0.080 Sum_probs=173.5
Q ss_pred cCCEEEEEEcCCCCEEEEEECC------------------------CcEEEEeCcCCceeeeeecccccCccccEEEeec
Q 004404 456 NGSIWSIKFSLDGRYLASAGED------------------------CVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~LaTgs~D------------------------GtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~ 511 (755)
-+.|.+|+++|+|+++++...+ ++|.+||..+++....+ ..+.......+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----~~~~~~~p~gia~ 98 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----GKNLFYLPHGLSI 98 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE----CTTTCSSEEEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc----CCCccCCceEEEE
Confidence 3679999999999999888877 47999999888765443 2234445667888
Q ss_pred CCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCC--ceEEe---------ccCCCCEEEEEecC-Cc
Q 004404 512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK--PICSF---------QGHLDDVLDLSWSK-SQ 579 (755)
Q Consensus 512 s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k--~i~~l---------~gH~~~V~~L~~sp-d~ 579 (755)
.+++.++++......+.... ..++ .+..+ .++......|+++| ++
T Consensus 99 d~~g~l~v~d~~~~~v~~~~-----------------------~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g 155 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKLD-----------------------PHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG 155 (329)
T ss_dssp CTTSCEEEEETTTTEEEEEC-----------------------TTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred CCCCCEEEEECCCCEEEEEe-----------------------CCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence 89998887776555553322 2222 22222 34555789999999 65
Q ss_pred EEEEEe--CCCcEEEEECCCCcEEEEee-cC----------CceEEEEEeeCC-CcEEEEEECCCcEEEEECCCCcEEEe
Q 004404 580 HLLSSS--MDKTVRLWHLSSKTCLKIFS-HS----------DYVTCIQFNPVD-DRYFISGSLDAKVRIWSIPERQVVDW 645 (755)
Q Consensus 580 ~LaSgs--~DgtVrLWDl~t~~~~~~~~-h~----------~~VtsVafsP~d-g~~LaSgS~DgtVrIWDl~t~~~v~~ 645 (755)
.|+.+. .++.|++|+ ..++.+..+. .. .....|+++| + +.++++...++.|++|+..+++.+..
T Consensus 156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 554444 589999999 5677777775 21 2389999999 6 78888888899999999998887765
Q ss_pred cc---CCCCEEEEEEccCCCEEEE-------EECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeE
Q 004404 646 ND---LHEMVTAACYTPDGQGALV-------GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (755)
Q Consensus 646 ~~---~~~~VtsvafSPdG~~Las-------Gs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~ 715 (755)
.. +...+..++|+| +..+++ ...+..|++|++.+++.+..+.. ...+...+.+|+++|+|. +
T Consensus 234 ~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------~~~~~~~p~~ia~~~dG~-l 305 (329)
T 3fvz_A 234 IKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------VRKHFDMPHDIVASEDGT-V 305 (329)
T ss_dssp ECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC------SSSCCSSEEEEEECTTSE-E
T ss_pred EeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC------CCCccCCeeEEEECCCCC-E
Confidence 43 345788999999 433333 23355899999999988775421 125677899999999994 7
Q ss_pred EEEEECCCcEEEEEC
Q 004404 716 VLVTSADSRIRVVDG 730 (755)
Q Consensus 716 L~sgs~Dg~IrVWD~ 730 (755)
+++...+++|++|+.
T Consensus 306 yvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 306 YIGDAHTNTVWKFTL 320 (329)
T ss_dssp EEEESSSCCEEEEEE
T ss_pred EEEECCCCEEEEEeC
Confidence 888888999999983
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.61 E-value=2.2e-14 Score=171.18 Aligned_cols=250 Identities=10% Similarity=0.071 Sum_probs=164.9
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccc
Q 004404 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (755)
Q Consensus 457 ~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~ 536 (755)
....++.|+|||++|+++ |++|++|++.+++....+..............+.++||+..++....+..+......
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~--- 91 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT--- 91 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE---
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc---
Confidence 346689999999999986 999999999988765443211111111112236789999988876544322100000
Q ss_pred cccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCc-EEEEEeCCCcEEEEECCCCcEEEEee--cCCce---
Q 004404 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYV--- 610 (755)
Q Consensus 537 ~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~-~LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~V--- 610 (755)
....+|++....+..+..|...+...+|||++ .|+.+ .++.|++|++.+++..+... +...+
T Consensus 92 -----------~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g 159 (740)
T 4a5s_A 92 -----------ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNG 159 (740)
T ss_dssp -----------EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred -----------eEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecC
Confidence 00145666666666778888899999999994 56655 57899999999887655332 32223
Q ss_pred --------------EEEEEeeCCCcEEEEEECCC------------------------------------cEEEEECCC-
Q 004404 611 --------------TCIQFNPVDDRYFISGSLDA------------------------------------KVRIWSIPE- 639 (755)
Q Consensus 611 --------------tsVafsP~dg~~LaSgS~Dg------------------------------------tVrIWDl~t- 639 (755)
..+.|+| |+++|+.++.|. +|++||+.+
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL 238 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred cccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence 3489999 999999886432 488899988
Q ss_pred --C---cEEEecc------CCCCEEEEEEccCCCEEEEEEC----CCcEEEEECCCCe----eeeccccccccccccCCC
Q 004404 640 --R---QVVDWND------LHEMVTAACYTPDGQGALVGSY----KGSCHLYNTSENK----LQQKSPINLQNKKKRSHQ 700 (755)
Q Consensus 640 --~---~~v~~~~------~~~~VtsvafSPdG~~LasGs~----DG~I~lwDl~~~~----~~~~~~i~~~~~~~~~h~ 700 (755)
+ +...+.. +...+..++|+|||+.++.... +..|++||+.+++ ......+ ....|.
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l-----~~~~~~ 313 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH-----IEMSTT 313 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE-----EEECSS
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe-----eeccCC
Confidence 7 5555443 5667999999999997766543 2369999999887 2221110 002444
Q ss_pred CCeE-----EEEEccCCCeEEEEEEC-C--CcEEEEE
Q 004404 701 RKIT-----GFQFAPGSSSEVLVTSA-D--SRIRVVD 729 (755)
Q Consensus 701 ~~Vt-----sl~fsPdg~~~L~sgs~-D--g~IrVWD 729 (755)
..|. .+.|+|||+.+++..+. + ..|++||
T Consensus 314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 4443 67899999844425653 3 4578888
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.60 E-value=9.9e-13 Score=137.06 Aligned_cols=240 Identities=10% Similarity=0.120 Sum_probs=165.4
Q ss_pred cccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecc-cccCccccEEEeec-CCCCceeccccC-CCceeee
Q 004404 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK-QEDGHLNMLLLANG-SPEPTSLSPKHL-DNHLEKK 530 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~-~~~~~~~~v~~v~~-s~dg~~l~~~s~-d~~i~~~ 530 (755)
+|-..+.+|+++++++++++...++.|.+|+.. ++....+... ...++......+++ .+++.++++... +..+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i--- 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI--- 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE---
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE---
Confidence 566789999999999999988889999999976 4444443211 11233344566666 466766666532 3333
Q ss_pred cccccccccccccCcccccceeeecCCCceEEec-cCCCCEEEEEecCCcEE-EEEeCCCcEEEEECCCCcEEEEee---
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKSQHL-LSSSMDKTVRLWHLSSKTCLKIFS--- 605 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~-gH~~~V~~L~~spd~~L-aSgs~DgtVrLWDl~t~~~~~~~~--- 605 (755)
.+++..++.+..+. .+...+.+|++.+++.+ ++...++.|++||.. ++.+..+.
T Consensus 103 --------------------~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~ 161 (286)
T 1q7f_A 103 --------------------QIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK 161 (286)
T ss_dssp --------------------EEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT
T ss_pred --------------------EEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCC
Confidence 23333444444443 34457899999998554 455567899999964 66666664
Q ss_pred cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC---CCEEEEEEccCCCEEEEEECCC-cEEEEECCCC
Q 004404 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYKG-SCHLYNTSEN 681 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~---~~VtsvafSPdG~~LasGs~DG-~I~lwDl~~~ 681 (755)
+...+..|+++| +++++++...++.|++||... +.+..+... ..+..++++|+|+++++...++ .|++|+.. +
T Consensus 162 ~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g 238 (286)
T 1q7f_A 162 HLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G 238 (286)
T ss_dssp TCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S
T ss_pred ccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C
Confidence 445789999999 888888888899999999854 444333322 5789999999998888887776 99999965 4
Q ss_pred eeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+.+..+.. ......+.++++.|+|. +++ ++.|++|++|+.
T Consensus 239 ~~~~~~~~-------~~~~~~~~~i~~~~~g~-l~v-s~~~~~v~v~~~ 278 (286)
T 1q7f_A 239 QLISALES-------KVKHAQCFDVALMDDGS-VVL-ASKDYRLYIYRY 278 (286)
T ss_dssp CEEEEEEE-------SSCCSCEEEEEEETTTE-EEE-EETTTEEEEEEC
T ss_pred CEEEEEcc-------cCCCCcceeEEECCCCc-EEE-ECCCCeEEEEEc
Confidence 44443321 12234578999999985 444 478999999984
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.58 E-value=1.3e-13 Score=149.44 Aligned_cols=275 Identities=11% Similarity=-0.005 Sum_probs=162.2
Q ss_pred cCCCcEEEEeCC--CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeee
Q 004404 418 DDSQDVSFHGQE--RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (755)
Q Consensus 418 ~ds~~~l~sg~~--dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~ 495 (755)
+++..+++.... +..|++|+...++...+. .++...+..+.|+|||++|+.++.++.|.+|++.+++......
T Consensus 45 pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-----~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~ 119 (396)
T 3c5m_A 45 QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-----EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT 119 (396)
T ss_dssp TTSCEEEEEECTTSSCEEEEEETTTTEEEECC-----CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCcEEEee-----cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe
Confidence 444444444433 457888888766533221 2222223347899999999999999999999998776433221
Q ss_pred cccccCcc-ccEEE-------------eecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceE
Q 004404 496 EKQEDGHL-NMLLL-------------ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC 561 (755)
Q Consensus 496 ~~~~~~~~-~~v~~-------------v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~ 561 (755)
........ ..+.. ..++|++..++..... .........++++......
T Consensus 120 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~------------------~~~~~~~l~~~d~~~g~~~ 181 (396)
T 3c5m_A 120 VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY------------------HTNPTCRLIKVDIETGELE 181 (396)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH------------------HTCCCEEEEEEETTTCCEE
T ss_pred cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec------------------cCCCcceEEEEECCCCcEE
Confidence 00000000 00000 2233433333221100 0000000123444444444
Q ss_pred EeccCCCCEEEEEecC-C-cEEEEEeCC------CcEEEEECCCCcEEEEeec--CCceEEEEEeeCCCcEEEEEECC--
Q 004404 562 SFQGHLDDVLDLSWSK-S-QHLLSSSMD------KTVRLWHLSSKTCLKIFSH--SDYVTCIQFNPVDDRYFISGSLD-- 629 (755)
Q Consensus 562 ~l~gH~~~V~~L~~sp-d-~~LaSgs~D------gtVrLWDl~t~~~~~~~~h--~~~VtsVafsP~dg~~LaSgS~D-- 629 (755)
.+..+...+..+.|+| + +.|+..+.+ ..|.+||+..++......+ ...+..++|+| ++++|+.++.+
T Consensus 182 ~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~ 260 (396)
T 3c5m_A 182 VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKG 260 (396)
T ss_dssp EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETT
T ss_pred eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCC
Confidence 4556777899999999 5 456665543 3688999876654443333 23588899999 88877776554
Q ss_pred ---CcEEEEECCCCcEEEeccCCCCEEEEEEcc-CCCEEEEEE----------------CCCcEEEEECCCCeeeecccc
Q 004404 630 ---AKVRIWSIPERQVVDWNDLHEMVTAACYTP-DGQGALVGS----------------YKGSCHLYNTSENKLQQKSPI 689 (755)
Q Consensus 630 ---gtVrIWDl~t~~~v~~~~~~~~VtsvafSP-dG~~LasGs----------------~DG~I~lwDl~~~~~~~~~~i 689 (755)
+.|++||+.+++...+..... .. ++|+| +|++|++++ .+..|++||+.+++.....
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-- 336 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC-- 336 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE--
T ss_pred CccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc--
Confidence 459999999887665443333 33 89999 999888765 3478999999887653211
Q ss_pred ccccccccCCCC-----------CeEEEEEccCCCeEEEEEE-CCCcEEEEE
Q 004404 690 NLQNKKKRSHQR-----------KITGFQFAPGSSSEVLVTS-ADSRIRVVD 729 (755)
Q Consensus 690 ~~~~~~~~~h~~-----------~Vtsl~fsPdg~~~L~sgs-~Dg~IrVWD 729 (755)
.+.. .+..+.|+|+|+ .|+.++ .++...||.
T Consensus 337 --------~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 337 --------KHSTSWDVLDGDRQITHPHPSFTPNDD-GVLFTSDFEGVPAIYI 379 (396)
T ss_dssp --------ECCCCCCCBTTBSSTTCCCCEECTTSS-EEEEEECTTSSCEEEE
T ss_pred --------CCCCccccccccccCCCCCceEccCCC-eEEEEecCCCCceEEE
Confidence 1222 256678999998 555554 456655554
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.57 E-value=1e-13 Score=150.47 Aligned_cols=255 Identities=15% Similarity=0.101 Sum_probs=162.8
Q ss_pred eecccCCEEE-----EEEcCCCCEEEEEEC-CCc--EEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccC
Q 004404 452 IQAHNGSIWS-----IKFSLDGRYLASAGE-DCV--IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (755)
Q Consensus 452 l~gH~~~I~s-----I~fSpdg~~LaTgs~-DGt--VrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~ 523 (755)
+..|...... .+|+|||++|+.++. ++. |.+||+.+++..... .++...+....|+|++..|+....
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-----~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-----EGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-----CSSCBCSSSCEECTTSSEEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-----eCCCCCccceEEcCCCCEEEEEeC
Confidence 4456655555 889999999999987 674 888888777654332 222233334579999998887765
Q ss_pred CCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEe--cCCcEEEEE----------------
Q 004404 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSW--SKSQHLLSS---------------- 584 (755)
Q Consensus 524 d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~--spd~~LaSg---------------- 584 (755)
+..+ .++++ +++....+..+...+....| +|++.++.+
T Consensus 101 ~~~l-----------------------~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~ 157 (388)
T 3pe7_A 101 GRNL-----------------------MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK 157 (388)
T ss_dssp TTEE-----------------------EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred CCeE-----------------------EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence 4333 22232 23333344445554544443 777443332
Q ss_pred -------eCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC------CcEEEEECCCCcEEEeccCC--
Q 004404 585 -------SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVDWNDLH-- 649 (755)
Q Consensus 585 -------s~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D------gtVrIWDl~t~~~v~~~~~~-- 649 (755)
..+..|++||+.+++......+...+..++|+|.+++.|+.+..+ ..|.++|+..+....+..+.
T Consensus 158 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 237 (388)
T 3pe7_A 158 FHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG 237 (388)
T ss_dssp HHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT
T ss_pred hhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC
Confidence 245789999999998877777888899999999556777777653 37888898877766665555
Q ss_pred CCEEEEEEccCCCEEEEEEC-CC----cEEEEECCCCeeeeccccccccccccCCCC---CeEEEEEccCCCeEEEEE--
Q 004404 650 EMVTAACYTPDGQGALVGSY-KG----SCHLYNTSENKLQQKSPINLQNKKKRSHQR---KITGFQFAPGSSSEVLVT-- 719 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~-DG----~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~---~Vtsl~fsPdg~~~L~sg-- 719 (755)
..+..++|+|||+.|+..+. ++ .|++||+.+++........ ++.. ....+.|+|+|+. |+..
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-------~~~~~~~~~~~~~~spdg~~-l~~~~~ 309 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP-------ACSHLMSNYDGSLMVGDGSD-APVDVQ 309 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC-------CEEEEEECTTSSEEEEEECC-C-----
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC-------CceeeeecCCCCeEccCCCc-ceeEee
Confidence 35788999999997765443 22 3999999998754322111 1000 0112369999984 4433
Q ss_pred -------ECCCcEEEEEC-CcceEEeecCCc
Q 004404 720 -------SADSRIRVVDG-IDLVHKFKGENY 742 (755)
Q Consensus 720 -------s~Dg~IrVWD~-~~ll~~~~GH~~ 742 (755)
..+..|++||. ...+..+..|..
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 340 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQHRVARHDT 340 (388)
T ss_dssp -------CCCCEEEEEETTTTEEEEEEECCC
T ss_pred eccccccCCCCEEEEEeccCCceEEeccccC
Confidence 45678999993 334456666655
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.56 E-value=9e-14 Score=162.79 Aligned_cols=270 Identities=11% Similarity=0.025 Sum_probs=177.5
Q ss_pred EeecccCCEEEEEEcCCCCEEEEE--ECCCcEEEEeCcCCceeeeeecccccCc------cccEEEeecCCCCce-eccc
Q 004404 451 EIQAHNGSIWSIKFSLDGRYLASA--GEDCVIHVWQVVESERKGELLEKQEDGH------LNMLLLANGSPEPTS-LSPK 521 (755)
Q Consensus 451 ~l~gH~~~I~sI~fSpdg~~LaTg--s~DGtVrVWdl~t~~~~~~l~~~~~~~~------~~~v~~v~~s~dg~~-l~~~ 521 (755)
.+.+|...|..++|++++.++++. +.++...||....+.....+........ .........+||+.. ++..
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456899999999999887777777 5688999999754444444321110000 000112223488776 5544
Q ss_pred cCC-CceeeecccccccccccccCcccccceeeecC--C-CceEEecc-----CCCCEEEEEecCC-cEEEEEeCC----
Q 004404 522 HLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALS--D-KPICSFQG-----HLDDVLDLSWSKS-QHLLSSSMD---- 587 (755)
Q Consensus 522 s~d-~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s--~-k~i~~l~g-----H~~~V~~L~~spd-~~LaSgs~D---- 587 (755)
... ..+ .++... + .....+.. |...+..++|+|+ +.|++++.+
T Consensus 98 ~~~~~~l-----------------------~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 154 (662)
T 3azo_A 98 HFGDQRL-----------------------YAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGE 154 (662)
T ss_dssp BTTTCCE-----------------------EEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSS
T ss_pred ECCCCeE-----------------------EEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCC
Confidence 321 111 122222 2 33444554 6677899999999 678888776
Q ss_pred ------CcEEEEECCC------CcEEEEe-ecCCceEEEEEeeCCCcEEEEEECCC--------cEEEEECC-CC---cE
Q 004404 588 ------KTVRLWHLSS------KTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDA--------KVRIWSIP-ER---QV 642 (755)
Q Consensus 588 ------gtVrLWDl~t------~~~~~~~-~h~~~VtsVafsP~dg~~LaSgS~Dg--------tVrIWDl~-t~---~~ 642 (755)
..|++||+.+ ++..... .+...+..++|+| |+++|+.++.++ .|++||+. ++ +.
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~ 233 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADT 233 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEE
T ss_pred CCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCccccc
Confidence 5899999998 6666555 5667888999999 999999887553 79999998 56 55
Q ss_pred EEeccC-CCCEEEEEEccCCCEEEEEECCC--cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 643 VDWNDL-HEMVTAACYTPDGQGALVGSYKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 643 v~~~~~-~~~VtsvafSPdG~~LasGs~DG--~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
..+... ...+..++|+|||++++++..++ .|++||+.+++........... ....-.-.+..++|+|++. +++++
T Consensus 234 ~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~p~w~~~~~~~~~~~~~~-~~~~~ 311 (662)
T 3azo_A 234 RTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF-AGPLWTPGMRWFAPLANGL-IAVVH 311 (662)
T ss_dssp EEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS-SCCCCSTTCCSEEECTTSC-EEEEE
T ss_pred EEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc-cCccccccCceEeEeCCCE-EEEEE
Confidence 555443 57899999999999888888888 6777777676654432210000 0000000156788999887 78888
Q ss_pred ECCCcEEEE--EC-CcceEEeecCCccEEEE
Q 004404 720 SADSRIRVV--DG-IDLVHKFKGENYVQYMV 747 (755)
Q Consensus 720 s~Dg~IrVW--D~-~~ll~~~~GH~~~V~sv 747 (755)
.. +.++|| |. +..+..+..|...+..+
T Consensus 312 ~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 312 GK-GAAVLGILDPESGELVDAAGPWTEWAAT 341 (662)
T ss_dssp BS-SSCEEEEEETTTTEEEECCSSCCEEEEE
T ss_pred Ec-CccEEEEEECCCCcEEEecCCCCeEEEE
Confidence 88 999999 52 34577888887766655
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.53 E-value=8.8e-13 Score=143.91 Aligned_cols=276 Identities=12% Similarity=0.069 Sum_probs=183.0
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC----------CCcEEEEeCcCCceeeeeeccc
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE----------DCVIHVWQVVESERKGELLEKQ 498 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~----------DGtVrVWdl~t~~~~~~l~~~~ 498 (755)
.++.|.+||..++++. ..+..+..+ .|+|+|||++|+++.. +++|.+||+.+.+...++....
T Consensus 29 ~d~~v~v~D~~t~~~~-----~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFL-----GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GGCEEEEEETTTCCEE-----EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred ccCeEEEEECCCCeEE-----EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 4779999998766643 345556555 8999999999998863 6789999999888777764221
Q ss_pred c-cCccccEEEeecCCCCceeccccC--CCceeeecccccccccccccCcccccceeeec-CCCceEE-eccCCCCEEEE
Q 004404 499 E-DGHLNMLLLANGSPEPTSLSPKHL--DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICS-FQGHLDDVLDL 573 (755)
Q Consensus 499 ~-~~~~~~v~~v~~s~dg~~l~~~s~--d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~-l~gH~~~V~~L 573 (755)
. .........+.++|++..++.... ...+ .+++. +.+.+.. +. +. ....+
T Consensus 102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v-----------------------~v~d~~~~~~~~~~i~-~~-~~~~v 156 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSI-----------------------GIVDVAKGDYVEDVTA-AA-GCWSV 156 (361)
T ss_dssp TBCCBCCCGGGEEECTTSSEEEEEEESSSEEE-----------------------EEEETTTTEEEEEEGG-GT-TEEEE
T ss_pred cccccCCCcceEEECCCCCEEEEECCCCCCeE-----------------------EEEECCCCcEEEEEec-CC-Cccee
Confidence 1 001122345678999988877643 2233 23333 2233333 22 21 22335
Q ss_pred EecCC--cEEEEEeCCCcEEEEECCC-CcEEEE------ee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE
Q 004404 574 SWSKS--QHLLSSSMDKTVRLWHLSS-KTCLKI------FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (755)
Q Consensus 574 ~~spd--~~LaSgs~DgtVrLWDl~t-~~~~~~------~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v 643 (755)
.+.|+ ..+++.+.||.+.+|++.. ++.... +. ...++ .+.+.| ++..++..+.+++|.++|+......
T Consensus 157 ~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~ 234 (361)
T 2oiz_A 157 IPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPAL-DKDKAHFVSYYGNVYSADFSGDEVK 234 (361)
T ss_dssp EECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEE-CSSEEEEEBTTSEEEEEECSSSSCE
T ss_pred EEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecc-cCCEEEEEeCCCeEEEEEecCCCce
Confidence 56675 4788899999999999865 555422 11 12222 334467 6777777888999999999765422
Q ss_pred --EeccC-------C----CCEEEEEEccCCCEEEEEEC-----------CCcEEEEECCCCeeeeccccccccccccCC
Q 004404 644 --DWNDL-------H----EMVTAACYTPDGQGALVGSY-----------KGSCHLYNTSENKLQQKSPINLQNKKKRSH 699 (755)
Q Consensus 644 --~~~~~-------~----~~VtsvafSPdG~~LasGs~-----------DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h 699 (755)
..... . .....++|+|+++.++++.. .+.|.+||+.+++.+..+. .+
T Consensus 235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~---------~~ 305 (361)
T 2oiz_A 235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP---------GR 305 (361)
T ss_dssp EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE---------CT
T ss_pred ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe---------cC
Confidence 21110 0 11113789999988888654 3479999999999887654 33
Q ss_pred CCCeEEEEEccCCCeEEEEEECCCcEEEEE--CC--cceEEeecCCccEEEEEEEE
Q 004404 700 QRKITGFQFAPGSSSEVLVTSADSRIRVVD--GI--DLVHKFKGENYVQYMVCIVL 751 (755)
Q Consensus 700 ~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~--~ll~~~~GH~~~V~sv~fs~ 751 (755)
. +.+++|+|+|+ +|++++. ++|.||| ++ +++.++..+......+++.|
T Consensus 306 ~--p~~ia~spdg~-~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 306 D--ALSMTIDQQRN-LMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp T--CCEEEEETTTT-EEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred C--eeEEEECCCCC-EEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence 3 89999999998 7777776 9999999 57 78888777777777776653
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.53 E-value=5.1e-13 Score=159.43 Aligned_cols=267 Identities=13% Similarity=0.120 Sum_probs=163.1
Q ss_pred eeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccC-----CEEEEEEcCCCCEEEEEECC---------Cc
Q 004404 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG-----SIWSIKFSLDGRYLASAGED---------CV 479 (755)
Q Consensus 414 vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~-----~I~sI~fSpdg~~LaTgs~D---------Gt 479 (755)
+....++ .+++++ ++.|++|+..+++...+ +.+|.. ....+.|||||++|+.++.+ +.
T Consensus 22 ~~w~~dg-~~~~~~--~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 22 LRWISDH-EYLYKQ--ENNILVFNAEYGNSSVF-----LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp EEECSSS-EEEEEE--TTEEEEEETTTCCEEEE-----ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cEECCCC-cEEEEc--CCcEEEEECCCCceEEE-----EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3344444 344554 89999999988775433 445543 33458899999999999886 55
Q ss_pred EEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccc-cccccccccCcccccceeeecCCC
Q 004404 480 IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFALSDK 558 (755)
Q Consensus 480 VrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~-~~~~~s~s~d~~~~~~~v~~~s~k 558 (755)
+.+||+.+++... + ..+...+....|+|||..++.... ..+..+.... ..... ...+.
T Consensus 94 ~~~~d~~~~~~~~-l-----~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~~~~~~l--------------t~~g~ 152 (740)
T 4a5s_A 94 YDIYDLNKRQLIT-E-----ERIPNNTQWVTWSPVGHKLAYVWN-NDIYVKIEPNLPSYRI--------------TWTGK 152 (740)
T ss_dssp EEEEETTTTEECC-S-----SCCCTTEEEEEECSSTTCEEEEET-TEEEEESSTTSCCEEC--------------CSCCB
T ss_pred EEEEECCCCcEEE-c-----ccCCCcceeeEECCCCCEEEEEEC-CeEEEEECCCCceEEE--------------cCCCC
Confidence 6799999886432 2 233456889999999998887743 3332222111 00000 00111
Q ss_pred ceEEeccCCC---------CEEEEEecCC-cEEEEEeCCC------------------------------------cEEE
Q 004404 559 PICSFQGHLD---------DVLDLSWSKS-QHLLSSSMDK------------------------------------TVRL 592 (755)
Q Consensus 559 ~i~~l~gH~~---------~V~~L~~spd-~~LaSgs~Dg------------------------------------tVrL 592 (755)
....+.++.. ....+.|+|| .+|+..+.|. +|++
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 1112223321 2234789998 4577665322 5888
Q ss_pred EECCC---C---cEEEEee------cCCceEEEEEeeCCCcEEEEEEC----CCcEEEEECCCCc----EE---Ee--cc
Q 004404 593 WHLSS---K---TCLKIFS------HSDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIPERQ----VV---DW--ND 647 (755)
Q Consensus 593 WDl~t---~---~~~~~~~------h~~~VtsVafsP~dg~~LaSgS~----DgtVrIWDl~t~~----~v---~~--~~ 647 (755)
||+.+ + +...... |...+..++|+| |+++++.... +..|++||+.+++ +. .. ..
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~ 311 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS 311 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC
T ss_pred EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc
Confidence 99998 7 4444332 677899999999 8987666543 3479999998876 22 11 23
Q ss_pred CCCCEE-----EEEEccCCCEEE-EEEC-C--CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 648 LHEMVT-----AACYTPDGQGAL-VGSY-K--GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 648 ~~~~Vt-----svafSPdG~~La-sGs~-D--G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
+...|. .++|+|||+.|+ ..+. + ..|++||+.++...... ...-.|..+.+ ++++.++++
T Consensus 312 ~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT----------~g~~~v~~~~~-~d~~~i~f~ 380 (740)
T 4a5s_A 312 TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT----------KGTWEVIGIEA-LTSDYLYYI 380 (740)
T ss_dssp SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC----------CSSSCEEEEEE-ECSSEEEEE
T ss_pred CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc----------cCCEEEEEEEE-EeCCEEEEE
Confidence 343433 788999999877 6653 3 35888998876654321 23445666543 446644555
Q ss_pred EEC
Q 004404 719 TSA 721 (755)
Q Consensus 719 gs~ 721 (755)
+..
T Consensus 381 ~~~ 383 (740)
T 4a5s_A 381 SNE 383 (740)
T ss_dssp ESC
T ss_pred Eec
Confidence 544
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.49 E-value=6.2e-12 Score=134.32 Aligned_cols=270 Identities=12% Similarity=0.066 Sum_probs=163.5
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECC---C--cEEEEeCcCCceeeeeecccccCccc
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---C--VIHVWQVVESERKGELLEKQEDGHLN 504 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~D---G--tVrVWdl~t~~~~~~l~~~~~~~~~~ 504 (755)
+..|++|+...++... + ..+..++|+|||++||.++.+ + .|.+|++.+++...... . ..
T Consensus 42 ~~~l~~~d~~~~~~~~------l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-----~-~~ 105 (347)
T 2gop_A 42 ENTIVIENLKNNARRF------I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-----A-KN 105 (347)
T ss_dssp EEEEEEEETTTCCEEE------E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-----E-SE
T ss_pred cceEEEEeCCCCceEE------c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-----C-CC
Confidence 6788999988665322 2 468899999999999988754 3 37778887665433221 1 12
Q ss_pred cEEEeecCCCCceeccccCCCceeeecccccccccccccCc------ccccceeeecCCCce-EEeccCCCCEEEEEecC
Q 004404 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDH------MVVPETVFALSDKPI-CSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 505 ~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~------~~~~~~v~~~s~k~i-~~l~gH~~~V~~L~~sp 577 (755)
+..+.|+|++..++....+..- ...........+..+. ......++++..... ..+.. . .+..+.|+|
T Consensus 106 -~~~~~wspdg~~l~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp 180 (347)
T 2gop_A 106 -IRSLEWNEDSRKLLIVGFKRRE--DEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR 180 (347)
T ss_dssp -EEEEEECTTSSEEEEEEECCCC-----------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET
T ss_pred -ccceeECCCCCEEEEEEccCCC--cCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC
Confidence 7788999999877765432100 0000000000000000 000012344433333 45544 3 788999999
Q ss_pred CcEEEEEeCCC-------cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC--------CcEEEEECCCCcE
Q 004404 578 SQHLLSSSMDK-------TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD--------AKVRIWSIPERQV 642 (755)
Q Consensus 578 d~~LaSgs~Dg-------tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D--------gtVrIWDl~t~~~ 642 (755)
++.++++..+. ...||.+.+++......+ ..+..+ +| ++++|+.++.+ ..|.+|| +++.
T Consensus 181 dg~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~ 254 (347)
T 2gop_A 181 DKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKEV 254 (347)
T ss_dssp TEEEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSCE
T ss_pred CeEEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCce
Confidence 99555555442 344444445555444445 555554 99 99988887754 3688888 6666
Q ss_pred EEeccC-CCCEEE-EEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 643 VDWNDL-HEMVTA-ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 643 v~~~~~-~~~Vts-vafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
..+... ...+.. +.|+ ++ ++++++.++.++|| +.+++.... ..+...|.++.|+| . ++++++
T Consensus 255 ~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~----------~~~~~~v~~~~~s~--~-~~~~~~ 318 (347)
T 2gop_A 255 MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI----------AKGRHWIMGFDVDE--I-VVYLKE 318 (347)
T ss_dssp EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE----------ECSSSEEEEEEESS--S-EEEEEE
T ss_pred EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE----------ecCCCeEEeeeeeC--c-EEEEEc
Confidence 655444 456776 9999 88 88899999999999 875443221 13467899999999 3 777777
Q ss_pred CCCcE-EEEEC-CcceEEeecCCcc
Q 004404 721 ADSRI-RVVDG-IDLVHKFKGENYV 743 (755)
Q Consensus 721 ~Dg~I-rVWD~-~~ll~~~~GH~~~ 743 (755)
.+++. +||.. ++ +.++..|...
T Consensus 319 ~~~~~~~l~~~~g~-~~~lt~~n~~ 342 (347)
T 2gop_A 319 TATRLRELFTWDGE-EKQLTDYNDP 342 (347)
T ss_dssp CSSSCCEEEEESSS-EEECCCTTST
T ss_pred CCCChHHheEeCCc-EEEeccccHh
Confidence 76653 55542 43 5567766553
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.49 E-value=2.1e-12 Score=140.38 Aligned_cols=180 Identities=10% Similarity=-0.014 Sum_probs=117.9
Q ss_pred EEEEEecCCcE---EEEEe-------------CCCcEEEEECC-CCcEEEEee-----cCCceEEEEEeeCCCcEEEEEE
Q 004404 570 VLDLSWSKSQH---LLSSS-------------MDKTVRLWHLS-SKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGS 627 (755)
Q Consensus 570 V~~L~~spd~~---LaSgs-------------~DgtVrLWDl~-t~~~~~~~~-----h~~~VtsVafsP~dg~~LaSgS 627 (755)
+..++|+|++. ++++. .++++.+|++. .++....+. +...+.+++|+| ++++|+++.
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~ 163 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSAD 163 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEE
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEc
Confidence 55688999865 33442 68999999997 466554433 456899999999 999888766
Q ss_pred C-CCcEEEEECC-CCcEEE--ecc---CCCCEEEEEEccCCCEEEEEEC-CCcEEEEECC--CCeeeecc-ccccccccc
Q 004404 628 L-DAKVRIWSIP-ERQVVD--WND---LHEMVTAACYTPDGQGALVGSY-KGSCHLYNTS--ENKLQQKS-PINLQNKKK 696 (755)
Q Consensus 628 ~-DgtVrIWDl~-t~~~v~--~~~---~~~~VtsvafSPdG~~LasGs~-DG~I~lwDl~--~~~~~~~~-~i~~~~~~~ 696 (755)
. ++.|++|++. ++++.. ... +...+..++|+|+|++|++++. ++.|.+|++. ++++.... .+.......
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 4 6899999998 776532 222 2467999999999999988775 6899999875 45543200 000000011
Q ss_pred cCCCC------CeEEEE-EccCCCeEEEEEEC-CC-----cEEEEEC---CcceE---EeecCCccEEEEEEEE
Q 004404 697 RSHQR------KITGFQ-FAPGSSSEVLVTSA-DS-----RIRVVDG---IDLVH---KFKGENYVQYMVCIVL 751 (755)
Q Consensus 697 ~~h~~------~Vtsl~-fsPdg~~~L~sgs~-Dg-----~IrVWD~---~~ll~---~~~GH~~~V~sv~fs~ 751 (755)
.+|.. .+..++ |+|+|+ +|+++.. +. +|++|+. +++.. .+..+......++|+|
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred CCcccccccccccccEEEECCCCC-EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence 23333 588999 999998 5665543 23 8999983 44433 2333444444555554
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.48 E-value=2e-11 Score=127.06 Aligned_cols=227 Identities=11% Similarity=0.119 Sum_probs=152.0
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeee-eEeecccCCEEEEEE-cCCCCEEEEEEC-CCcEEEEeCcCCceeeeeeccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKC-QEIQAHNGSIWSIKF-SLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQ 498 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~-q~l~gH~~~I~sI~f-Spdg~~LaTgs~-DGtVrVWdl~t~~~~~~l~~~~ 498 (755)
.++++...++.|.+|+...+.. ..+.. ..-.+|...+.+|++ .++++++++... ++.|.+|+ .+++....+.
T Consensus 42 ~l~v~~~~~~~i~~~d~~g~~~-~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~--- 116 (286)
T 1q7f_A 42 DIIVADTNNHRIQIFDKEGRFK-FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFG--- 116 (286)
T ss_dssp CEEEEEGGGTEEEEECTTSCEE-EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEEC---
T ss_pred CEEEEECCCCEEEEECCCCcEE-EEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEec---
Confidence 4556667889999999763321 11110 001245678999999 577776666643 88999999 4555544431
Q ss_pred ccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEec--cCCCCEEEEEec
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--GHLDDVLDLSWS 576 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~--gH~~~V~~L~~s 576 (755)
.........+++.+++.++++......+. +++..++.+..+. ++...+..|+++
T Consensus 117 -~~~~~~~~~i~~~~~g~l~v~~~~~~~i~-----------------------~~~~~g~~~~~~~~~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 117 -ATILQHPRGVTVDNKGRIIVVECKVMRVI-----------------------IFDQNGNVLHKFGCSKHLEFPNGVVVN 172 (286)
T ss_dssp -TTTCSCEEEEEECTTSCEEEEETTTTEEE-----------------------EECTTSCEEEEEECTTTCSSEEEEEEC
T ss_pred -CccCCCceEEEEeCCCCEEEEECCCCEEE-----------------------EEcCCCCEEEEeCCCCccCCcEEEEEC
Confidence 22334566788888888777654444442 2333334444442 455678999999
Q ss_pred CCcEEEEE-eCCCcEEEEECCCCcEEEEeec---CCceEEEEEeeCCCcEEEEEECCC-cEEEEECCCCcEEE-eccC--
Q 004404 577 KSQHLLSS-SMDKTVRLWHLSSKTCLKIFSH---SDYVTCIQFNPVDDRYFISGSLDA-KVRIWSIPERQVVD-WNDL-- 648 (755)
Q Consensus 577 pd~~LaSg-s~DgtVrLWDl~t~~~~~~~~h---~~~VtsVafsP~dg~~LaSgS~Dg-tVrIWDl~t~~~v~-~~~~-- 648 (755)
+++.++.+ ..++.|++||.. ++.+..+.. ...+..|+++| +++++++...++ .|.+||.. ++.+. +..+
T Consensus 173 ~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~ 249 (286)
T 1q7f_A 173 DKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQLISALESKVK 249 (286)
T ss_dssp SSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SCEEEEEEESSC
T ss_pred CCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCC
Confidence 98665544 568999999974 566666652 36789999999 888888888776 99999965 44443 3222
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 004404 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 649 ~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~ 681 (755)
...+.+++++|+|+++++ +.++.|++|++...
T Consensus 250 ~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 250 HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 235889999999976666 67999999997653
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.46 E-value=1.1e-11 Score=133.27 Aligned_cols=270 Identities=6% Similarity=-0.009 Sum_probs=180.8
Q ss_pred CCCcEEEEeeCCCCcccceeeee-EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccE
Q 004404 428 QERVRVRQYGKSCKDLTALYKCQ-EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506 (755)
Q Consensus 428 ~~dg~Vriwd~~~~~~~~~~~~q-~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v 506 (755)
..++.|.+||..+++........ .-.........|.+. +++++++...++.|.+||..+++.+.++.. ....
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~------~~~p 86 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG------FTSP 86 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC------CSSE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC------CCCC
Confidence 45899999999877654322100 001122456778874 455566666689999999999988777621 1234
Q ss_pred EEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCC-----CCEEEEEecCCcE
Q 004404 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL-----DDVLDLSWSKSQH 580 (755)
Q Consensus 507 ~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~-----~~V~~L~~spd~~ 580 (755)
..+++++++.++++...++.+. +++. +.+.+..+.... .....|++ .++.
T Consensus 87 ~~i~~~~~g~lyv~~~~~~~v~-----------------------~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~ 142 (328)
T 3dsm_A 87 RYIHFLSDEKAYVTQIWDYRIF-----------------------IINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKY 142 (328)
T ss_dssp EEEEEEETTEEEEEEBSCSEEE-----------------------EEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTE
T ss_pred cEEEEeCCCeEEEEECCCCeEE-----------------------EEECCCCeEEEEEEcCCccccCCCcceEEE-ECCE
Confidence 4555666676555543333332 2222 222222332211 13456666 4566
Q ss_pred EEEEe--CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC----------CcEEEEECCCCcEEEeccC
Q 004404 581 LLSSS--MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD----------AKVRIWSIPERQVVDWNDL 648 (755)
Q Consensus 581 LaSgs--~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D----------gtVrIWDl~t~~~v~~~~~ 648 (755)
|+++. .+++|.+||+.+++.+..+........++++| ++++++++..+ +.|.+||..++++......
T Consensus 143 lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 143 VYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp EEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred EEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence 66665 48999999999999988887555678899999 88877776655 7899999999988755544
Q ss_pred --CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE----ECC
Q 004404 649 --HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT----SAD 722 (755)
Q Consensus 649 --~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg----s~D 722 (755)
...+..++|+|+++.|+++.. .|++||+.+++......+ ..+.....+++++|++..++++. ..+
T Consensus 222 ~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~-------~~~~~~p~gi~vdp~~g~lyva~~~~y~~~ 292 (328)
T 3dsm_A 222 KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFL-------EFRDTKYYGLTVNPNNGEVYVADAIDYQQQ 292 (328)
T ss_dssp CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSB-------CCCSSCEEEEEECTTTCCEEEEECTTSSSE
T ss_pred CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeee-------cCCCCceEEEEEcCCCCeEEEEcccccccC
Confidence 347899999999999998765 999999998876432111 11246789999999655455665 578
Q ss_pred CcEEEEE-CCcceEEee
Q 004404 723 SRIRVVD-GIDLVHKFK 738 (755)
Q Consensus 723 g~IrVWD-~~~ll~~~~ 738 (755)
++|.+|| .++++.++.
T Consensus 293 ~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 293 GIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp EEEEEECTTCCEEEEEE
T ss_pred CEEEEECCCCCEEEEEE
Confidence 9999999 577787776
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.45 E-value=8.3e-12 Score=146.07 Aligned_cols=271 Identities=10% Similarity=0.004 Sum_probs=168.0
Q ss_pred CCCcEEEEeeCCCCcccceeeeeEeecccCCEE---------EEEEc--CCCCE-EEEEEC-CCcEEEEeCc--CCceee
Q 004404 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIW---------SIKFS--LDGRY-LASAGE-DCVIHVWQVV--ESERKG 492 (755)
Q Consensus 428 ~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~---------sI~fS--pdg~~-LaTgs~-DGtVrVWdl~--t~~~~~ 492 (755)
..++...+|....+. ..+.+..|...|. ...|+ |||++ |+.++. +..|.+|++. ......
T Consensus 44 ~~~~~~~l~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~ 118 (662)
T 3azo_A 44 AEAGRATLVRRRADG-----AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR 118 (662)
T ss_dssp TTTTEEEEEEECTTS-----CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE
T ss_pred ccCCcEEEEEECCCC-----CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE
Confidence 557778888753221 1234556666666 66665 99998 776654 4566666654 202233
Q ss_pred eeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC------CceEEec-c
Q 004404 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD------KPICSFQ-G 565 (755)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~------k~i~~l~-g 565 (755)
.+.......+...+..+.|+|++..++....+..- ... ........++++.+ .....+. .
T Consensus 119 ~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~----~~~---------~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 185 (662)
T 3azo_A 119 PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTG----EGP---------SDVRRFLAAVPLDGSAAADRSAVRELSDD 185 (662)
T ss_dssp ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECS----SST---------TCEEEEEEEEETTSTTTTCGGGSEESSCS
T ss_pred eccCCccCCCCccccCcEECCCCCEEEEEEecccC----CCC---------CCceeEEEEEECCCCccccCCceeEEEec
Confidence 33211111144567789999999988776543100 000 00000013444444 4455555 6
Q ss_pred CCCCEEEEEecCC-cEEEEEeCC--------CcEEEEECC-CC---cEEEEee-cCCceEEEEEeeCCCcEEEEEECCC-
Q 004404 566 HLDDVLDLSWSKS-QHLLSSSMD--------KTVRLWHLS-SK---TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA- 630 (755)
Q Consensus 566 H~~~V~~L~~spd-~~LaSgs~D--------gtVrLWDl~-t~---~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~Dg- 630 (755)
+...+..++|+|+ .+|+.++.+ ..|++||+. ++ +...... +...+..+.|+| |+++++++..++
T Consensus 186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~ 264 (662)
T 3azo_A 186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGW 264 (662)
T ss_dssp CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSS
T ss_pred CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCC
Confidence 6677888999999 567777755 379999998 56 4444444 578899999999 888888888888
Q ss_pred -cEEEEECCCCcEEEeccCCCC---------EEEEEEccCCCEEEEEECCCcEEEE--ECCCCeeeeccccccccccccC
Q 004404 631 -KVRIWSIPERQVVDWNDLHEM---------VTAACYTPDGQGALVGSYKGSCHLY--NTSENKLQQKSPINLQNKKKRS 698 (755)
Q Consensus 631 -tVrIWDl~t~~~v~~~~~~~~---------VtsvafSPdG~~LasGs~DG~I~lw--Dl~~~~~~~~~~i~~~~~~~~~ 698 (755)
.|.+||+.+++...+..++.. +..++|+|++++++++.. +.++|| |+.+++... +..
T Consensus 265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~----------l~~ 333 (662)
T 3azo_A 265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVD----------AAG 333 (662)
T ss_dssp CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEE----------CCS
T ss_pred eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEE----------ecC
Confidence 677777777777666554322 467899999999999998 999999 666665322 225
Q ss_pred CCCCeEEEEEccCCCeEEEEE-ECCCc--EEEEE
Q 004404 699 HQRKITGFQFAPGSSSEVLVT-SADSR--IRVVD 729 (755)
Q Consensus 699 h~~~Vtsl~fsPdg~~~L~sg-s~Dg~--IrVWD 729 (755)
|...+..+ |++++..+++++ +.+.. |.+||
T Consensus 334 ~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 334 PWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp SCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEE
T ss_pred CCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEE
Confidence 66667766 144454344444 55544 55556
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.44 E-value=3.6e-12 Score=139.02 Aligned_cols=242 Identities=12% Similarity=0.031 Sum_probs=145.9
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeec---ccCCEEEEEEcCCCCEEEEEEC--CCcEEEEeCcCCceeee-eecccccCc
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQA---HNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGE-LLEKQEDGH 502 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~g---H~~~I~sI~fSpdg~~LaTgs~--DGtVrVWdl~t~~~~~~-l~~~~~~~~ 502 (755)
.++.|.+||..+.+....... ... +......|+|+|||++|+++.. +++|.+||+.+++.+.. +... +
T Consensus 79 ~~~~v~v~d~~t~~~~~~i~~--~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~---~- 152 (361)
T 2oiz_A 79 RSDVVEVWDADKLTFEKEISL--PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA---G- 152 (361)
T ss_dssp EEEEEEEEETTTCCEEEEEEE--CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT---T-
T ss_pred CCCEEEEEECcCCcEEEEEEc--CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC---C-
Confidence 467899999875543322211 111 2345678999999999998874 68999999999877665 4211 1
Q ss_pred cccEEEeecCCCC-ceeccccCCCceeeecccccccccccccCcccccceeeecCCCce------EEeccCCCCEEEEEe
Q 004404 503 LNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI------CSFQGHLDDVLDLSW 575 (755)
Q Consensus 503 ~~~v~~v~~s~dg-~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i------~~l~gH~~~V~~L~~ 575 (755)
...+...|++ ..+++...++.+....... .++.. ..+..+..++ .+.+
T Consensus 153 ---~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~---------------------~g~~~~~~~~~~~~~~~~~~~-~~~~ 207 (361)
T 2oiz_A 153 ---CWSVIPQPNRPRSFMTICGDGGLLTINLGE---------------------DGKVASQSRSKQMFSVKDDPI-FIAP 207 (361)
T ss_dssp ---EEEEEECTTSSSEEEEEETTSSEEEEEECT---------------------TSSEEEEEECCCCSCTTTSCB-CSCC
T ss_pred ---cceeEEcCCCCeeEEEECCCCcEEEEEECC---------------------CCcEeeeccccceEcCCCCce-EEEe
Confidence 0011122222 1222222222221111000 00000 0111111111 1122
Q ss_pred cCC-cEEEEEeCCCcEEEEECCCCc--EEEEeec-------C----CceEEEEEeeCCCcEEEEEEC-----------CC
Q 004404 576 SKS-QHLLSSSMDKTVRLWHLSSKT--CLKIFSH-------S----DYVTCIQFNPVDDRYFISGSL-----------DA 630 (755)
Q Consensus 576 spd-~~LaSgs~DgtVrLWDl~t~~--~~~~~~h-------~----~~VtsVafsP~dg~~LaSgS~-----------Dg 630 (755)
+++ ..++..+.++.|.++|+.... .+..+.. . .....++|+| +++.++++.. .+
T Consensus 208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCS
T ss_pred cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCc
Confidence 333 456666788999999987553 2222211 1 1112378999 7776666543 34
Q ss_pred cEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC--eeeeccccccccccccCCCCCeEEEEE
Q 004404 631 KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN--KLQQKSPINLQNKKKRSHQRKITGFQF 708 (755)
Q Consensus 631 tVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~--~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (755)
+|.+||+.+++.+....... +..++|+|||++|++++. +.|.+||+.++ +.+..+ ..+......+++
T Consensus 287 ~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i---------~~~G~~P~~~~~ 355 (361)
T 2oiz_A 287 EIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI---------EGAAEASLQVQF 355 (361)
T ss_dssp EEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE---------TTSCSSEEEEEE
T ss_pred eEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe---------ccCCCCcEEEEe
Confidence 89999999999987776666 999999999999999887 99999999999 776543 145677889999
Q ss_pred ccCCC
Q 004404 709 APGSS 713 (755)
Q Consensus 709 sPdg~ 713 (755)
+|+|.
T Consensus 356 ~p~G~ 360 (361)
T 2oiz_A 356 HPVGG 360 (361)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 99985
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.43 E-value=8.2e-13 Score=143.09 Aligned_cols=245 Identities=12% Similarity=0.036 Sum_probs=152.5
Q ss_pred CCEEEEEEcCCCCEEEEEECC---CcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccc
Q 004404 457 GSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (755)
Q Consensus 457 ~~I~sI~fSpdg~~LaTgs~D---GtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~ 533 (755)
..+..++|+|||++|+..... ..|.+|++.+++... +. ...........|+|++..++....+..+..+...
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~----~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LT----EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CC----CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETT
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-ee----cCCCCccccceECCCCCEEEEEEcCCcEEEEECC
Confidence 347788999999998877553 368888987765432 21 1111112235689999888776555433222211
Q ss_pred ccccccccccCcccccceeeecCCCceEEeccCCCCEEE-------------------EEecCC-cEEEEE-----eCCC
Q 004404 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD-------------------LSWSKS-QHLLSS-----SMDK 588 (755)
Q Consensus 534 ~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~-------------------L~~spd-~~LaSg-----s~Dg 588 (755)
. ++....+..+...... +.|+|+ ..++.. ..+.
T Consensus 111 ~----------------------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 111 T----------------------LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp T----------------------CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred C----------------------CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence 1 1111111112221111 345666 333322 4567
Q ss_pred cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC------CcEEEEECCCCcEEEeccCC--CCEEEEEEccC
Q 004404 589 TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVDWNDLH--EMVTAACYTPD 660 (755)
Q Consensus 589 tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D------gtVrIWDl~t~~~v~~~~~~--~~VtsvafSPd 660 (755)
.|++||+.+++......+...+..+.|+|.++..|+..+.+ ..|.+||+.+++...+..+. ..+..++|+|+
T Consensus 169 ~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 169 RLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp EEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTT
T ss_pred eEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCC
Confidence 89999999988877777888899999999446666666544 36889998877665554432 25888999999
Q ss_pred CCEEEEEECC-----CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEcc-CCCeEEEEEE--------------
Q 004404 661 GQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-GSSSEVLVTS-------------- 720 (755)
Q Consensus 661 G~~LasGs~D-----G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsP-dg~~~L~sgs-------------- 720 (755)
|++|+.++.+ +.|++||+.+++...... . . ... +.|+| +|. +|+.++
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-------~---~-~~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-------M---P-PCS-HLMSNFDGS-LMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-------C---C-SEE-EEEECSSSS-EEEEEECCC----------C
T ss_pred CCEEEEEecCCCCccceEEEEECCCCCeEEeee-------C---C-CCC-CCccCCCCc-eEEEecCCcceeeccccccc
Confidence 9988776544 449999999886543211 1 1 123 88999 998 666654
Q ss_pred --CCCcEEEEEC--CcceEEeecCCc
Q 004404 721 --ADSRIRVVDG--IDLVHKFKGENY 742 (755)
Q Consensus 721 --~Dg~IrVWD~--~~ll~~~~GH~~ 742 (755)
.+..|++||. ++ +..+..|..
T Consensus 316 ~~~~~~i~~~d~~~~~-~~~l~~~~~ 340 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKS-AQKLCKHST 340 (396)
T ss_dssp CCCCCEEEEEETTTTB-CCEEEECCC
T ss_pred cCCCCcEEEEecccCc-eEEccCCCC
Confidence 3478999993 33 334554443
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.42 E-value=2e-10 Score=122.99 Aligned_cols=222 Identities=10% Similarity=0.098 Sum_probs=156.0
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCc-eeeeeeccc----ccCccc
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEKQ----EDGHLN 504 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~-~~~~l~~~~----~~~~~~ 504 (755)
++.|.+|+..++++.... -.++-.....|+++|+|+++++...++.|++|+..... .+..+.... ...+..
T Consensus 68 ~~~i~~~d~~~g~~~~~~----~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 143 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSS----GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC 143 (329)
T ss_dssp SCCEEEECTTTCCEEEEE----CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCS
T ss_pred CCcEEEEECCCCeEEecc----CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccC
Confidence 357999998766653221 12555689999999999999998889999999985442 233331111 123444
Q ss_pred cEEEeecCC-CCceecccc-CCCceeeecccccccccccccCcccccceeeecCCCceEEec----------cCCCCEEE
Q 004404 505 MLLLANGSP-EPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ----------GHLDDVLD 572 (755)
Q Consensus 505 ~v~~v~~s~-dg~~l~~~s-~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~----------gH~~~V~~ 572 (755)
....+++++ ++.++++.. ....+.. ++..++.+..+. ++......
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~-----------------------~~~~g~~~~~~~~~g~~~~~~~~~~~~p~g 200 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQ-----------------------FSPSGKFVTQWGEESSGSSPRPGQFSVPHS 200 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEE-----------------------ECTTSCEEEEECEECCSSSCCTTEESCEEE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEE-----------------------EcCCCCEEEEeccCCCCCCCCCcccCCCcE
Confidence 567888898 788877764 3444432 223333333332 23345889
Q ss_pred EEecCC-cEE-EEEeCCCcEEEEECCCCcEEEEee---cCCceEEEEEeeCCCcEEEEEE-------CCCcEEEEECCCC
Q 004404 573 LSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGS-------LDAKVRIWSIPER 640 (755)
Q Consensus 573 L~~spd-~~L-aSgs~DgtVrLWDl~t~~~~~~~~---h~~~VtsVafsP~dg~~LaSgS-------~DgtVrIWDl~t~ 640 (755)
|+++|+ +.| ++...++.|++|+..+++.+..+. +...+..++|+| +..+++.+ .+.+|++|++.++
T Consensus 201 ia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g 278 (329)
T 3fvz_A 201 LALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSG 278 (329)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred EEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCC
Confidence 999997 655 455568899999999899988884 567889999998 33333332 3458999999999
Q ss_pred cEEEec----cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 004404 641 QVVDWN----DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (755)
Q Consensus 641 ~~v~~~----~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~ 680 (755)
+++..+ .+...+..|+++|+|..+++...++.|++|++..
T Consensus 279 ~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 279 EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 988765 3446799999999997777788899999999864
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.40 E-value=1.9e-10 Score=122.25 Aligned_cols=238 Identities=13% Similarity=0.096 Sum_probs=154.6
Q ss_pred EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCC----Cc
Q 004404 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD----NH 526 (755)
Q Consensus 451 ~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d----~~ 526 (755)
.+..+...+.+++|+++|++++++..++.|.+||..+++...... .....+..+.+++++.++++...+ ..
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-----SHKANPAAIKIHKDGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-----CSSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee-----CCCCCcceEEECCCCcEEEEeCCCCCCCce
Confidence 455677788999999999988888889999999998766443221 223557788889998877765433 12
Q ss_pred eeeecccccccccccccCcccccceeeecCCCceE-Eec--cCCCCEEEEEecCCcEEEEEeCC-------CcEEEEECC
Q 004404 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC-SFQ--GHLDDVLDLSWSKSQHLLSSSMD-------KTVRLWHLS 596 (755)
Q Consensus 527 i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~-~l~--gH~~~V~~L~~spd~~LaSgs~D-------gtVrLWDl~ 596 (755)
+. +++.....+. .+. .+...+.+++++|++.++.+... +.|..|+..
T Consensus 114 i~-----------------------~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~ 170 (333)
T 2dg1_A 114 IF-----------------------AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD 170 (333)
T ss_dssp EE-----------------------EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT
T ss_pred EE-----------------------EEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC
Confidence 21 1222222221 111 23457899999999766666552 556666666
Q ss_pred CCcEEEEeecCCceEEEEEeeCCCcEEE-EEECCCcEEEEECCC-CcEE-E-----e--ccCCCCEEEEEEccCCCEEEE
Q 004404 597 SKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLDAKVRIWSIPE-RQVV-D-----W--NDLHEMVTAACYTPDGQGALV 666 (755)
Q Consensus 597 t~~~~~~~~h~~~VtsVafsP~dg~~La-SgS~DgtVrIWDl~t-~~~v-~-----~--~~~~~~VtsvafSPdG~~Las 666 (755)
+++......+...+..++|+| ++++|+ +.+.++.|.+|++.+ +..+ . . ......+..++++++|+++++
T Consensus 171 ~~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~ 249 (333)
T 2dg1_A 171 FRTVTPIIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA 249 (333)
T ss_dssp SCCEEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE
T ss_pred CCEEEEeecCCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEE
Confidence 555554444455689999999 887554 445678999999964 3221 1 1 111246888999999998877
Q ss_pred EECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC
Q 004404 667 GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (755)
Q Consensus 667 Gs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D 722 (755)
...++.|.+||.. ++....+.... ...+|...+.+++|+|++. .|++++.+
T Consensus 250 ~~~~~~v~~~d~~-g~~~~~~~~~~---~~~g~~~~~~~~~~~~dg~-~L~v~~~~ 300 (333)
T 2dg1_A 250 MYGQGRVLVFNKR-GYPIGQILIPG---RDEGHMLRSTHPQFIPGTN-QLIICSND 300 (333)
T ss_dssp EETTTEEEEECTT-SCEEEEEECTT---GGGTCSCBCCEEEECTTSC-EEEEEEEC
T ss_pred EcCCCEEEEECCC-CCEEEEEEcCC---CccccccCcceEEECCCCC-EEEEEeCc
Confidence 7778999999984 44444332110 0013334688999999986 45555444
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.40 E-value=1.6e-11 Score=130.64 Aligned_cols=258 Identities=10% Similarity=-0.018 Sum_probs=168.7
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccc
Q 004404 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (755)
Q Consensus 457 ~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~ 536 (755)
..|.++.|++++..++..+.++.+++|. .+....+ ..+......+.+++++.+++++..++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~g~l~~~~~~~~~i~-------- 69 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEI-----SKKGLQLEGLNFDRQGQLFLLDVFEGNIF-------- 69 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEE-----ESSCCCEEEEEECTTSCEEEEETTTCEEE--------
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEEE-----eccCccccCcEECCCCCEEEEECCCCEEE--------
Confidence 4577889999888888778889999993 2333232 12233446777888888776655444442
Q ss_pred cccccccCcccccceeeecCCCceEE-eccCCCCEEEEEecCCcEEEEEe-CC----CcEEEEECCCCcEEEEee---cC
Q 004404 537 NRKSLSLDHMVVPETVFALSDKPICS-FQGHLDDVLDLSWSKSQHLLSSS-MD----KTVRLWHLSSKTCLKIFS---HS 607 (755)
Q Consensus 537 ~~~s~s~d~~~~~~~v~~~s~k~i~~-l~gH~~~V~~L~~spd~~LaSgs-~D----gtVrLWDl~t~~~~~~~~---h~ 607 (755)
+++.....+.. +..+...+.+++++|++.++.+. .+ +.|.+||..++.....+. +.
T Consensus 70 ---------------~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 70 ---------------KINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp ---------------EECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred ---------------EEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 22322222222 22456789999999996555554 44 589999998877654443 45
Q ss_pred CceEEEEEeeCCCcEEEEEEC------CCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEE-ECCCcEEEEECCC
Q 004404 608 DYVTCIQFNPVDDRYFISGSL------DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVG-SYKGSCHLYNTSE 680 (755)
Q Consensus 608 ~~VtsVafsP~dg~~LaSgS~------DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasG-s~DG~I~lwDl~~ 680 (755)
..+..++++| +++++++... .+.|..|+..+++...+......+..++|+|+|++|+++ ..++.|++|++..
T Consensus 135 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 135 YCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 6799999999 8887776654 356777777666665444444568899999999877655 4578999999964
Q ss_pred -CeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE-CCcceEEeecCCc------cEEEEEE
Q 004404 681 -NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-GIDLVHKFKGENY------VQYMVCI 749 (755)
Q Consensus 681 -~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD-~~~ll~~~~GH~~------~V~sv~f 749 (755)
+.....+.... .....++ ..+.++++.++|. ++++...++.|.+|| .++.+..+..+.. .+..++|
T Consensus 214 ~g~~~~~~~~~~-~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 214 DGVTIQPFGATI-PYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQF 287 (333)
T ss_dssp TSSSEEEEEEEE-EEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred CCcCcccccceE-EEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEE
Confidence 33222110000 0011122 4678899999997 666667789999999 4566777765543 4666665
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.39 E-value=1.7e-10 Score=136.90 Aligned_cols=251 Identities=12% Similarity=0.034 Sum_probs=159.7
Q ss_pred cccCCEEEEEEcCCCCEEEEEECCC-----cEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 454 AHNGSIWSIKFSLDGRYLASAGEDC-----VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTgs~DG-----tVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
+|...+..++|||||++||.+..++ .|++||+.+++........ ..+..+.|+||+..++....+..-.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~------~~~~~~~wspDg~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER------VKFSCMAWTHDGKGMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE------ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC------cccceEEEEeCCCEEEEEEECCccc
Confidence 4556789999999999998776543 8999999988765432111 1134678999998877765443200
Q ss_pred eecccccccccccccCcccccc--eeeecCC-C----ceEEeccCCCCEEEEEecCC-cEEEEEeC-----CCcEEEEEC
Q 004404 529 KKRRGRSINRKSLSLDHMVVPE--TVFALSD-K----PICSFQGHLDDVLDLSWSKS-QHLLSSSM-----DKTVRLWHL 595 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~--~v~~~s~-k----~i~~l~gH~~~V~~L~~spd-~~LaSgs~-----DgtVrLWDl 595 (755)
. .... ........ .++.+.. + .+.....|...+..+.|+|+ ++|+..+. +..|++||+
T Consensus 196 ~-~~~~--------~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~ 266 (710)
T 2xdw_A 196 K-SDGT--------ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDL 266 (710)
T ss_dssp C-CSSS--------CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEG
T ss_pred c-cccc--------ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEEC
Confidence 0 0000 00000011 2223322 1 12222335566889999999 55665554 578999999
Q ss_pred CC------C--cEEEEeecCCceEEEEEeeCCCcEEEEEECC----CcEEEEECCCCc---EEEeccCCC--CEEEEEEc
Q 004404 596 SS------K--TCLKIFSHSDYVTCIQFNPVDDRYFISGSLD----AKVRIWSIPERQ---VVDWNDLHE--MVTAACYT 658 (755)
Q Consensus 596 ~t------~--~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D----gtVrIWDl~t~~---~v~~~~~~~--~VtsvafS 658 (755)
.+ + .......+...+.. .|+| +++.|+..+.. ..|.+||+.++. ...+..+.. .+..++|+
T Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~ 344 (710)
T 2xdw_A 267 QQESNGITGILKWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV 344 (710)
T ss_dssp GGSSSSSCSSCCCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred cccccccCCccceEEeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE
Confidence 86 4 23333346656655 4888 77777766653 359999998764 244455544 68889999
Q ss_pred cCCCEEEEEECCCc--EEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE---CCCcEEEEEC
Q 004404 659 PDGQGALVGSYKGS--CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS---ADSRIRVVDG 730 (755)
Q Consensus 659 PdG~~LasGs~DG~--I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs---~Dg~IrVWD~ 730 (755)
+++.++++...++. |++|++.+++....+. .+...|..+.++|+++.++++.+ ..++|++||.
T Consensus 345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~---------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFP---------LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTTCCEEEEEC---------CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred cCCEEEEEEEECCEEEEEEEECCCCCEEEecC---------CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 88888888888885 6677876676544332 35677889999999874444443 3578999993
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.38 E-value=9.3e-11 Score=122.92 Aligned_cols=233 Identities=9% Similarity=-0.010 Sum_probs=154.8
Q ss_pred eEeecccCCEEEEEEcCCCC-EEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 450 QEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~-~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
..+..+.....+++|+|+|+ +++++..++.|.+|+..++ ...+. .+...+..+.+++++.++++......+.
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~-----~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM-----HPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE-----SSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE-----CCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 33445667788999999998 7888888999999999876 33331 2334567888899998877765444442
Q ss_pred eecccccccccccccCcccccceeeec-CCCceEEec---c-CCCCEEEEEecCCcEEEEE-----e-------------
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQ---G-HLDDVLDLSWSKSQHLLSS-----S------------- 585 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~---g-H~~~V~~L~~spd~~LaSg-----s------------- 585 (755)
.. +. +++...... + ....+.+++++|++.|+.+ +
T Consensus 94 ~~-----------------------d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~ 150 (296)
T 3e5z_A 94 RQ-----------------------REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMEL 150 (296)
T ss_dssp EE-----------------------CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCS
T ss_pred EE-----------------------cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccC
Confidence 22 22 111111111 1 1234678999999655553 2
Q ss_pred CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECC-CCcE---EEec-cCCCCEEEEEEccC
Q 004404 586 MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-ERQV---VDWN-DLHEMVTAACYTPD 660 (755)
Q Consensus 586 ~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~-t~~~---v~~~-~~~~~VtsvafSPd 660 (755)
..+.|..++.. ++......+......++|+| ++++|++.+.++.|.+|++. ++.+ .... .....+..++++++
T Consensus 151 ~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~ 228 (296)
T 3e5z_A 151 PGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAG 228 (296)
T ss_dssp SSCEEEEECTT-SCEEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTT
T ss_pred CCcEEEEECCC-CCEEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCC
Confidence 13456666655 55544455777889999999 89888777888999999997 5555 2222 23345678999999
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEE-ccCCCeEEEEEECCCcEEEEE
Q 004404 661 GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF-APGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 661 G~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f-sPdg~~~L~sgs~Dg~IrVWD 729 (755)
|+++++. ++.|.+|+.. ++....+. .+.. +++++| .|+++ .|++++.++ |.-++
T Consensus 229 G~l~v~~--~~~v~~~~~~-g~~~~~~~---------~~~~-~~~~~f~~~d~~-~L~v~t~~~-l~~~~ 283 (296)
T 3e5z_A 229 GLIWASA--GDGVHVLTPD-GDELGRVL---------TPQT-TSNLCFGGPEGR-TLYMTVSTE-FWSIE 283 (296)
T ss_dssp SCEEEEE--TTEEEEECTT-SCEEEEEE---------CSSC-CCEEEEESTTSC-EEEEEETTE-EEEEE
T ss_pred CCEEEEc--CCeEEEECCC-CCEEEEEE---------CCCC-ceeEEEECCCCC-EEEEEcCCe-EEEEE
Confidence 9865555 8899999987 55544332 3445 889999 58877 677777764 33344
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.36 E-value=7.7e-11 Score=125.75 Aligned_cols=238 Identities=11% Similarity=0.079 Sum_probs=154.0
Q ss_pred CCEEEEEEcCCCCEEEEEE---------CCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCC--
Q 004404 457 GSIWSIKFSLDGRYLASAG---------EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-- 525 (755)
Q Consensus 457 ~~I~sI~fSpdg~~LaTgs---------~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~-- 525 (755)
..+..++| ||++|+... .++.|.+|++.+++.. .+ ..+..+.|+|++..++......
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l---------~~~~~~~~SpDg~~la~~~~~~~~ 82 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI---------ENATMPRISPDGKKIAFMRANEEK 82 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE---------ESCEEEEECTTSSEEEEEEEETTT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec---------ccCCCeEECCCCCEEEEEEeccCC
Confidence 34667777 888877652 2568999999876532 22 3456789999998887653321
Q ss_pred -ceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCC----------------
Q 004404 526 -HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---------------- 587 (755)
Q Consensus 526 -~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~D---------------- 587 (755)
... ..++++.+.....+..+.. +..++|+|+ ..|+.++.+
T Consensus 83 ~~~~---------------------l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
T 2gop_A 83 KVSE---------------------IWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAW 140 (347)
T ss_dssp TEEE---------------------EEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC
T ss_pred Ccce---------------------EEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccccee
Confidence 100 0223333333333333334 999999998 567766532
Q ss_pred -----------CcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCC-------cEEEEECCCCcEEEeccCC
Q 004404 588 -----------KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA-------KVRIWSIPERQVVDWNDLH 649 (755)
Q Consensus 588 -----------gtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~Dg-------tVrIWDl~t~~~v~~~~~~ 649 (755)
..|++||+.+++.+..+... .+..++|+| ++ +++++..+. ...||.+.+++...+..+
T Consensus 141 ~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~- 216 (347)
T 2gop_A 141 FDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK- 216 (347)
T ss_dssp ---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-
T ss_pred ecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-
Confidence 57999999988874444334 888999999 88 777776542 334444446665555444
Q ss_pred CCEEEEEEccCCCEEEEEECC--------CcEEEEECCCCeeeeccccccccccccCCCCCeEE-EEEccCCCeEEEEEE
Q 004404 650 EMVTAACYTPDGQGALVGSYK--------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG-FQFAPGSSSEVLVTS 720 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~D--------G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts-l~fsPdg~~~L~sgs 720 (755)
..+..+ +|+|++|+.++.+ ..|++|| +++.... ...|...+.. +.|+ ++ ++++++
T Consensus 217 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l---------~~~~~~~~~~~~~~s-dg--~~~~~~ 280 (347)
T 2gop_A 217 VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI---------LDEVDRGVGQAKIKD-GK--VYFTLF 280 (347)
T ss_dssp ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES---------STTCCSEEEEEEEET-TE--EEEEEE
T ss_pred cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEec---------cccCCcccCCccEEc-Cc--EEEEEe
Confidence 445544 9999998887754 3688888 4443322 1255677886 8999 76 788889
Q ss_pred CCCcEEEEEC--CcceEEeecCCccEEEEEEE
Q 004404 721 ADSRIRVVDG--IDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 721 ~Dg~IrVWD~--~~ll~~~~GH~~~V~sv~fs 750 (755)
.++.++|| . ++. ..+..+...|..+++.
T Consensus 281 ~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s 310 (347)
T 2gop_A 281 EEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVD 310 (347)
T ss_dssp ETTEEEEE-EESSSE-EEEECSSSEEEEEEES
T ss_pred cCCcEEEE-EcCCce-EEEecCCCeEEeeeee
Confidence 99999998 4 344 3444556667777664
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.35 E-value=1.2e-10 Score=119.57 Aligned_cols=233 Identities=8% Similarity=-0.056 Sum_probs=154.5
Q ss_pred CEEEEEEcCCCCEEE-EEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccc
Q 004404 458 SIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (755)
Q Consensus 458 ~I~sI~fSpdg~~La-Tgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~ 536 (755)
...+|+++++|++++ +...++.|.+|+..+....... .........+.+.+++.++++.. ++.+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~------- 91 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-----FNGLYQPQGLAVDGAGTVYVTDF-NNRVVT------- 91 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-----CCSCCSCCCEEECTTCCEEEEET-TTEEEE-------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-----eCCcCCcceeEECCCCCEEEEcC-CCEEEE-------
Confidence 678999999999777 5467899999997554322111 11122344566677777665544 333321
Q ss_pred cccccccCcccccceeeecCCCceEEec-cCCCCEEEEEecCCcEEEEE-eCCCcEEEEECCCCcEEEEe-ecCCceEEE
Q 004404 537 NRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKSQHLLSS-SMDKTVRLWHLSSKTCLKIF-SHSDYVTCI 613 (755)
Q Consensus 537 ~~~s~s~d~~~~~~~v~~~s~k~i~~l~-gH~~~V~~L~~spd~~LaSg-s~DgtVrLWDl~t~~~~~~~-~h~~~VtsV 613 (755)
++..+.....+. .....+..|++.+++.|+.+ ..++.|.+|+..+....... .....+.+|
T Consensus 92 ----------------~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i 155 (270)
T 1rwi_B 92 ----------------LAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV 155 (270)
T ss_dssp ----------------ECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred ----------------EeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence 222222222222 22356899999998555544 56789999986655443322 234567899
Q ss_pred EEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccc
Q 004404 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ 692 (755)
Q Consensus 614 afsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~ 692 (755)
+++| +++++++...++.|.+||........... ....+..++++++|..+++...++.|.+|+.........
T Consensus 156 ~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~------ 228 (270)
T 1rwi_B 156 AVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL------ 228 (270)
T ss_dssp EECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC------
T ss_pred EEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee------
Confidence 9999 88877777778899999998876654332 226789999999997666666788999999876543321
Q ss_pred cccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 693 NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 693 ~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
...+...+.++++.|+|. ++++...+++|++|+.
T Consensus 229 ---~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 229 ---PFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTS 262 (270)
T ss_dssp ---CCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECC
T ss_pred ---ccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcC
Confidence 113346789999999997 7888888999999984
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.34 E-value=3.5e-10 Score=118.51 Aligned_cols=249 Identities=11% Similarity=0.062 Sum_probs=158.1
Q ss_pred eecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeee
Q 004404 416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (755)
Q Consensus 416 ~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~ 495 (755)
...++..+++++..++.|..|+...+ . +.+..+...+.+|+|+|+|+++++...++.|.+|+..+++.....
T Consensus 35 ~d~~g~~l~~~~~~~~~i~~~~~~~~-~------~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~- 106 (296)
T 3e5z_A 35 YVPARSAVIFSDVRQNRTWAWSDDGQ-L------SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA- 106 (296)
T ss_dssp EEGGGTEEEEEEGGGTEEEEEETTSC-E------EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE-
T ss_pred EeCCCCEEEEEeCCCCEEEEEECCCC-e------EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe-
Confidence 33445457788889999999998755 2 234457788999999999998888777889999999777643221
Q ss_pred cccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC-CceEEeccCCCCEEEEE
Q 004404 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLS 574 (755)
Q Consensus 496 ~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~-k~i~~l~gH~~~V~~L~ 574 (755)
..........+..+.+.+++.++++....+......... ... . .....++.+.. ..+..+..+......++
T Consensus 107 ~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~----~~~--~--~~~~~l~~~~~~g~~~~~~~~~~~~~gi~ 178 (296)
T 3e5z_A 107 DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG----GEM--E--LPGRWVFRLAPDGTLSAPIRDRVKPNGLA 178 (296)
T ss_dssp CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC----CCC--C--SSSCEEEEECTTSCEEEEECCCSSEEEEE
T ss_pred eccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc----ccc--c--CCCcEEEEECCCCCEEEeecCCCCCccEE
Confidence 111111122334567788888777532111100000000 000 0 00001222211 33444556667789999
Q ss_pred ecCC-cEEEEEeCCCcEEEEECC-CCcE---EEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC
Q 004404 575 WSKS-QHLLSSSMDKTVRLWHLS-SKTC---LKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL 648 (755)
Q Consensus 575 ~spd-~~LaSgs~DgtVrLWDl~-t~~~---~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~ 648 (755)
|+|+ ..|++.+.++.|++|++. .++. ...+. +...+.+|++++ +++++++. ++.|.+||.. ++.+..+..
T Consensus 179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD-GDELGRVLT 254 (296)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT-SCEEEEEEC
T ss_pred ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC-CCEEEEEEC
Confidence 9998 456666778999999987 4554 33332 455678899999 88866665 8899999987 555544433
Q ss_pred CCCEEEEEE-ccCCCEEEEEECCCcEEEEECCCCeeee
Q 004404 649 HEMVTAACY-TPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (755)
Q Consensus 649 ~~~Vtsvaf-SPdG~~LasGs~DG~I~lwDl~~~~~~~ 685 (755)
+..+++++| .|+++.|++++.+ .+.-+++.+.++.+
T Consensus 255 ~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 255 PQTTSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLEH 291 (296)
T ss_dssp SSCCCEEEEESTTSCEEEEEETT-EEEEEECSCCBCCC
T ss_pred CCCceeEEEECCCCCEEEEEcCC-eEEEEEcccccccc
Confidence 333899999 5899999999865 56666777666553
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.33 E-value=5.2e-11 Score=140.97 Aligned_cols=250 Identities=12% Similarity=0.066 Sum_probs=155.9
Q ss_pred cccCCEEEEEEcCCCCEEE-----EEECCCcEEEEeCcCCcee-eeeecccccCccccEEEeecCCCCceeccccCCCce
Q 004404 454 AHNGSIWSIKFSLDGRYLA-----SAGEDCVIHVWQVVESERK-GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~La-----Tgs~DGtVrVWdl~t~~~~-~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i 527 (755)
+|...+.+++|||||++|| .|+.+.+|++||+.+++.. .... ... ....+.|+|++..++....+..-
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~----~~~--~~~~~~wspDg~~l~~~~~d~~~ 191 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI----EGG--KYATPKWTPDSKGFYYEWLPTDP 191 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB----SCC--TTCCCEECTTSSEEEEEECCCCT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc----Ccc--cccceEEecCCCEEEEEEecCCC
Confidence 5777899999999999998 4455678999999988754 2110 111 11467899999888776543320
Q ss_pred eeecccccccccccccCcccccceeeecCC-----CceEEeccCCCCEEEEEecCC-cEEEEEeCCC----cEEEEECCC
Q 004404 528 EKKRRGRSINRKSLSLDHMVVPETVFALSD-----KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK----TVRLWHLSS 597 (755)
Q Consensus 528 ~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~-----k~i~~l~gH~~~V~~L~~spd-~~LaSgs~Dg----tVrLWDl~t 597 (755)
. ... . .. .......++.+.. ..+.....|...+..+.|+|+ .+|+..+.++ .|++|+..+
T Consensus 192 ~----~~~-~----~~-~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~ 261 (695)
T 2bkl_A 192 S----IKV-D----ER-PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE 261 (695)
T ss_dssp T----SCG-G----GG-GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC
T ss_pred C----Ccc-c----cC-CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC
Confidence 0 000 0 00 0000002233321 123334456678999999999 4566666555 678887766
Q ss_pred CcEEEEeecCCceEEEEEeeCCCcEEEEEE---CCCcEEEEECCCCcE---EEeccC--CCCEEEEEEccCCCEEEEEEC
Q 004404 598 KTCLKIFSHSDYVTCIQFNPVDDRYFISGS---LDAKVRIWSIPERQV---VDWNDL--HEMVTAACYTPDGQGALVGSY 669 (755)
Q Consensus 598 ~~~~~~~~h~~~VtsVafsP~dg~~LaSgS---~DgtVrIWDl~t~~~---v~~~~~--~~~VtsvafSPdG~~LasGs~ 669 (755)
++......+...+....+ + ++.+++... .++.|.+||+.++.. ..+..+ ...+..++|+ ++.++++...
T Consensus 262 ~~~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~ 338 (695)
T 2bkl_A 262 KDFRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK 338 (695)
T ss_dssp SSCEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred CceEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE
Confidence 666555566666777777 5 566444433 258899999987652 444444 3467888988 6778888888
Q ss_pred CCcEEEEECC-CCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC---CCcEEEEEC
Q 004404 670 KGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA---DSRIRVVDG 730 (755)
Q Consensus 670 DG~I~lwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~---Dg~IrVWD~ 730 (755)
++..+||.+. .++....+.+ .+...|..+.++|+++.++++.+. .++|++||.
T Consensus 339 dg~~~l~~~~~~g~~~~~l~~--------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 339 DATSEVRVATLKGKPVRTVQL--------PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp TTEEEEEEEETTCCEEEECCC--------SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred CCEEEEEEEeCCCCeeEEecC--------CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 9988877654 3433332211 225667888899988744444433 468999993
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.32 E-value=9e-09 Score=106.53 Aligned_cols=256 Identities=7% Similarity=0.035 Sum_probs=169.8
Q ss_pred eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeec
Q 004404 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (755)
Q Consensus 452 l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~ 531 (755)
+..+...+.+|++.++|+++++...++.|.+|+.. ++. ..+.. ......+..+...+++.++++....+.+....
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPL---PTPDAKVMCLTISSDGEVWFTENAANKIGRIT 84 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEC---SSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecC---CcccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence 34566789999999999988777668899999987 432 22211 11234566777788888777654444332211
Q ss_pred ccccccccccccCcccccceeeecCCCceEE--eccCCCCEEEEEecCCcEEEEE-eCCCcEEEEECCCCcEEEEe-e-c
Q 004404 532 RGRSINRKSLSLDHMVVPETVFALSDKPICS--FQGHLDDVLDLSWSKSQHLLSS-SMDKTVRLWHLSSKTCLKIF-S-H 606 (755)
Q Consensus 532 ~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~--l~gH~~~V~~L~~spd~~LaSg-s~DgtVrLWDl~t~~~~~~~-~-h 606 (755)
..++ +.. +..+...+..|++.+++.|+.+ ..++.|.+||. +++..... . .
T Consensus 85 -----------------------~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~ 139 (299)
T 2z2n_A 85 -----------------------KKGI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK 139 (299)
T ss_dssp -----------------------TTSC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred -----------------------CCCc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC
Confidence 1111 111 1223456899999998655554 45789999998 55544332 2 4
Q ss_pred CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe--ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeee
Q 004404 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 607 ~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~--~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~ 684 (755)
...+..+++.+ +++++++...++.|.+||. +++.... ......+..++++++|++.++...++.|.+||. ++...
T Consensus 140 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 216 (299)
T 2z2n_A 140 GSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT 216 (299)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence 56789999999 8888777777889999999 7766543 223457889999999987666666889999999 66543
Q ss_pred eccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECCcceEEee--cCCccEEEEEE
Q 004404 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFK--GENYVQYMVCI 749 (755)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~~ll~~~~--GH~~~V~sv~f 749 (755)
. +. ...+...+.++++.++|. ++++...++.|.+||....+..+. ++...+.++++
T Consensus 217 ~-~~-------~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~ 274 (299)
T 2z2n_A 217 E-FK-------IPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF 274 (299)
T ss_dssp E-EE-------CSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE
T ss_pred E-EE-------CCCCCCCceeEEECCCCC-EEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe
Confidence 2 11 113456789999999986 555555788999999533344443 33445666554
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.30 E-value=4.3e-10 Score=118.06 Aligned_cols=245 Identities=9% Similarity=0.013 Sum_probs=172.3
Q ss_pred CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcc
Q 004404 467 DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM 546 (755)
Q Consensus 467 dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~ 546 (755)
.+++|++++.|+.|.+||.++++.+.++.... ......+...|++.++++. +..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~----~~~~~~~~~~pdG~ilvs~--~~~V------------------- 58 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK----GWECNSVAATKAGEILFSY--SKGA------------------- 58 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT----TCCCCEEEECTTSCEEEEC--BSEE-------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc----cCCCcCeEECCCCCEEEeC--CCCE-------------------
Confidence 45789999999999999999999888774211 1234566778888887732 2222
Q ss_pred cccceeeecCCCceEEeccCC-CCEEEEEecCC-cEEEEEeC-CCcEEEEECCCCcEEEEeecC-------CceEEEEEe
Q 004404 547 VVPETVFALSDKPICSFQGHL-DDVLDLSWSKS-QHLLSSSM-DKTVRLWHLSSKTCLKIFSHS-------DYVTCIQFN 616 (755)
Q Consensus 547 ~~~~~v~~~s~k~i~~l~gH~-~~V~~L~~spd-~~LaSgs~-DgtVrLWDl~t~~~~~~~~h~-------~~VtsVafs 616 (755)
..++.+++.+..+..+. ..+.++.+.++ +.+++.+. ++.|..+|. +++.+..+... .....+++.
T Consensus 59 ----~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~ 133 (276)
T 3no2_A 59 ----KMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN 133 (276)
T ss_dssp ----EEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred ----EEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC
Confidence 23334566666666543 46888999998 55666666 677888875 67777776411 234556788
Q ss_pred eCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccc
Q 004404 617 PVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK 696 (755)
Q Consensus 617 P~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~ 696 (755)
+ +++++++...++.|.+||.. ++.+..+.....+.++.+.++|+.++++..++.|..+|..+++.+..+... ..
T Consensus 134 ~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~----~~ 207 (276)
T 3no2_A 134 K-KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAN----DI 207 (276)
T ss_dssp T-TSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGG----GS
T ss_pred C-CCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCC----CC
Confidence 8 89999999999999999998 888866665666778889999999999998889999999999988765311 11
Q ss_pred cC-CCCCeEEEEEccCCCeEEEEEE----------CCCcEEEEE-CCcceEEeecCCcc--EEEEE
Q 004404 697 RS-HQRKITGFQFAPGSSSEVLVTS----------ADSRIRVVD-GIDLVHKFKGENYV--QYMVC 748 (755)
Q Consensus 697 ~~-h~~~Vtsl~fsPdg~~~L~sgs----------~Dg~IrVWD-~~~ll~~~~GH~~~--V~sv~ 748 (755)
.+ ....+.+++..++|. .+++.. .++++.-.| .++++-.|..+..- +.++|
T Consensus 208 ~~~~l~~~~~~~~~~~G~-i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 208 EGVQLFFVAQLFPLQNGG-LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp BSCCCSEEEEEEECTTSC-EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred CCccccccccceEcCCCC-EEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 11 234588999999997 455542 123344444 57888888776654 55554
No 189
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.28 E-value=1.2e-09 Score=114.64 Aligned_cols=240 Identities=7% Similarity=0.059 Sum_probs=156.2
Q ss_pred cccCCEEEEEEcCCCCEEEE-------EECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCC-CceeccccCCC
Q 004404 454 AHNGSIWSIKFSLDGRYLAS-------AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDN 525 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaT-------gs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~d-g~~l~~~s~d~ 525 (755)
..-....+++|+++|+++++ +..++.|.+|+..+++... +......++...+..+.+.++ +.++++....+
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence 34456789999999998888 5778999999987766432 211111123345667778888 77666543222
Q ss_pred ceeeecccccccccccccCcccccceeeecCCCceEEe-c-----cCCCCEEEEEecCCcEEEEEeC-C-----------
Q 004404 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-Q-----GHLDDVLDLSWSKSQHLLSSSM-D----------- 587 (755)
Q Consensus 526 ~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l-~-----gH~~~V~~L~~spd~~LaSgs~-D----------- 587 (755)
+. .++..++ +..+ . .+...+.++++.+++.++.+.. +
T Consensus 94 -l~-----------------------~~d~~g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 94 -LL-----------------------VVQTDGT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp -EE-----------------------EEETTSC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred -EE-----------------------EEeCCCC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 21 1111111 1111 0 1123578999999866555554 3
Q ss_pred ----CcEEEEECCCCcEEEEeecCCceEEEEEe----eCCCcEEEEE-ECCCcEEEEECC-CCcE-----EEecc-CC-C
Q 004404 588 ----KTVRLWHLSSKTCLKIFSHSDYVTCIQFN----PVDDRYFISG-SLDAKVRIWSIP-ERQV-----VDWND-LH-E 650 (755)
Q Consensus 588 ----gtVrLWDl~t~~~~~~~~h~~~VtsVafs----P~dg~~LaSg-S~DgtVrIWDl~-t~~~-----v~~~~-~~-~ 650 (755)
+.|..|+.. ++......+......++|+ | +++.|+.+ ..++.|.+|++. +++. ..... +. .
T Consensus 149 ~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 226 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG 226 (314)
T ss_dssp SSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred cCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC
Confidence 467777766 6655555555667899999 9 87655544 567899999986 4442 11122 22 5
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 651 ~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
.+..++++++|+++++...++.|.+||..+++....+. .+...+.+++|+|++..++++...++.|..|+.
T Consensus 227 ~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~---------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe---------CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 68899999999888887788999999998666544322 344679999999999744444556789999984
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.27 E-value=9e-10 Score=115.59 Aligned_cols=229 Identities=10% Similarity=-0.004 Sum_probs=161.6
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeeccc-CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~-~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
.+++++..++.|.+||..+++..-. +..|. ..+.++.++|+|++|+ +.++.|..||. +++.+.++..
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~-----~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~---- 73 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWE-----YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA---- 73 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEE-----EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC----
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEE-----eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC----
Confidence 5678899999999999987775433 33444 4688999999999988 45788999999 7887777632
Q ss_pred CccccEEEeecCCCCceeccccC-CCceeeecccccccccccccCcccccceeeecCCCceEEec------cCCCCEEEE
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ------GHLDDVLDL 573 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~-d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~------gH~~~V~~L 573 (755)
.....+..+...+++.++++... ...+.. ++..++.+..+. ++......+
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~-----------------------vd~~Gk~l~~~~~~~~~~~~~~~~~~v 130 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILE-----------------------VNMKGEVLSKTEFETGIERPHAQFRQI 130 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEE-----------------------ECTTSCEEEEEEECCSCSSGGGSCSCC
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEE-----------------------EeCCCCEEEEEeccCCCCcccccccCc
Confidence 12234567778899888887654 333311 111222222221 122234455
Q ss_pred EecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC---
Q 004404 574 SWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--- 649 (755)
Q Consensus 574 ~~spd-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~--- 649 (755)
++.++ ++|++...++.|..||.. ++.+..+.....+.++.+.+ ++++++++..+++|..+|..+++++..+...
T Consensus 131 ~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~ 208 (276)
T 3no2_A 131 NKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE 208 (276)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB
T ss_pred eECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC
Confidence 66777 678888889999999998 99999998666677888888 8999999998889999999999987444211
Q ss_pred ----CCEEEEEEccCCCEEEEEECC--------CcEEEEEC-CCCeeeecc
Q 004404 650 ----EMVTAACYTPDGQGALVGSYK--------GSCHLYNT-SENKLQQKS 687 (755)
Q Consensus 650 ----~~VtsvafSPdG~~LasGs~D--------G~I~lwDl-~~~~~~~~~ 687 (755)
..+..++..++|..+++.... +..+++.+ .+++.+..+
T Consensus 209 ~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 209 GVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp SCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred CccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence 237899999999988887421 23456666 466665543
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.27 E-value=4.9e-08 Score=100.90 Aligned_cols=259 Identities=9% Similarity=0.020 Sum_probs=167.3
Q ss_pred EEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCc
Q 004404 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 423 ~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
+.+....++.|..|+.. ++.... .+..+...+.+|++.++|.++++...++.|..|+.. ++ ...+.. ...
T Consensus 28 l~v~~~~~~~v~~~d~~-~~~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~---~~~ 97 (299)
T 2z2n_A 28 VWITQHKANMISCINLD-GKITEY----PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IKEYTL---PNP 97 (299)
T ss_dssp EEEEETTTTEEEEECTT-CCEEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEEC---SST
T ss_pred EEEEecCCCcEEEEcCC-CCeEEe----cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeC---CCc
Confidence 34444457899999877 443211 123355789999999999988887778899999975 32 222211 112
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceE-EeccCCCCEEEEEecCCcEE
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC-SFQGHLDDVLDLSWSKSQHL 581 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~-~l~gH~~~V~~L~~spd~~L 581 (755)
......+...+++.++++....+.+... +..++... .+..+...+..+++.+++.+
T Consensus 98 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~-----------------------d~~g~~~~~~~~~~~~~~~~i~~~~~g~l 154 (299)
T 2z2n_A 98 DSAPYGITEGPNGDIWFTEMNGNRIGRI-----------------------TDDGKIREYELPNKGSYPSFITLGSDNAL 154 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEE-----------------------CTTCCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred CCCceeeEECCCCCEEEEecCCceEEEE-----------------------CCCCCEEEecCCCCCCCCceEEEcCCCCE
Confidence 3345667777888777665443333211 11111111 12224456899999998665
Q ss_pred EEEe-CCCcEEEEECCCCcEEEE-ee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec--cCCCCEEEEE
Q 004404 582 LSSS-MDKTVRLWHLSSKTCLKI-FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAAC 656 (755)
Q Consensus 582 aSgs-~DgtVrLWDl~t~~~~~~-~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~--~~~~~Vtsva 656 (755)
+.+. .++.|..||. +++.... +. ....+.++++.+ ++.++++...++.|.+||. +++..... .....+..++
T Consensus 155 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~ 231 (299)
T 2z2n_A 155 WFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAIT 231 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred EEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEE
Confidence 5554 5689999998 6665543 22 456789999999 8887777667889999999 76655432 2346799999
Q ss_pred EccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 657 fSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
++++|+..++...++.|.+||. ++.... +. ...+...+.++++ +++. |..+...+.|..++
T Consensus 232 ~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~-------~~~~~~~~~~i~~-~~g~--l~v~~~~~~l~~~~ 292 (299)
T 2z2n_A 232 AGAGIDLWFTEWGANKIGRLTS-NNIIEE-YP-------IQIKSAEPHGICF-DGET--IWFAMECDKIGKLT 292 (299)
T ss_dssp ECSTTCEEEEETTTTEEEEEET-TTEEEE-EE-------CSSSSCCEEEEEE-CSSC--EEEEETTTEEEEEE
T ss_pred ECCCCCEEEeccCCceEEEECC-CCceEE-Ee-------CCCCCCccceEEe-cCCC--EEEEecCCcEEEEE
Confidence 9999986555556789999998 444322 11 1234567899999 8875 44444456676666
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.25 E-value=1e-08 Score=118.64 Aligned_cols=284 Identities=13% Similarity=0.068 Sum_probs=170.7
Q ss_pred EEEeCCCcEEEEeeCC--CCcccceeeeeEeecccCCEEEEEEc----CCCCEEEEEEC-CCcEEEEeCcCCceeeeeec
Q 004404 424 SFHGQERVRVRQYGKS--CKDLTALYKCQEIQAHNGSIWSIKFS----LDGRYLASAGE-DCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 424 l~sg~~dg~Vriwd~~--~~~~~~~~~~q~l~gH~~~I~sI~fS----pdg~~LaTgs~-DGtVrVWdl~t~~~~~~l~~ 496 (755)
++.+..++.|.+||.. +.+.. .++.... ....|+|+ |||++|+++.. +++|.|+|..+.+.+..+..
T Consensus 211 lyv~~~dg~V~viD~~~~t~~~v-----~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~ 284 (567)
T 1qks_A 211 LFVIGRDGKVNMIDLWMKEPTTV-----AEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 284 (567)
T ss_dssp EEEEETTSEEEEEETTSSSCCEE-----EEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCeEEEEECCCCCCcEe-----EEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec
Confidence 4455678999999985 33322 2343332 35789999 69998888766 58999999998887776542
Q ss_pred ccccC-----ccc-cEEEeecCCCCceecc-ccCCCceeeecccccccccccccCcccccceeeecCC-C--ceEEeccC
Q 004404 497 KQEDG-----HLN-MLLLANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-K--PICSFQGH 566 (755)
Q Consensus 497 ~~~~~-----~~~-~v~~v~~s~dg~~l~~-~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~-k--~i~~l~gH 566 (755)
..... +.. .+..+..++++..++. ....+.+... +... + .+..+ ..
T Consensus 285 ~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v-----------------------d~~~~~~~~v~~i-~~ 340 (567)
T 1qks_A 285 RGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV-----------------------DYTDLNNLKTTEI-SA 340 (567)
T ss_dssp CEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE-----------------------ETTCSSEEEEEEE-EC
T ss_pred cccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE-----------------------ecCCCccceeeee-ec
Confidence 21100 111 2333444444332222 1122222111 1110 0 11111 22
Q ss_pred CCCEEEEEecCC-cEEEEEe-CCCcEEEEECCCCcEEEEee------cCCceEEEEEeeCC-CcEEEEEE-CCCcEEEEE
Q 004404 567 LDDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFS------HSDYVTCIQFNPVD-DRYFISGS-LDAKVRIWS 636 (755)
Q Consensus 567 ~~~V~~L~~spd-~~LaSgs-~DgtVrLWDl~t~~~~~~~~------h~~~VtsVafsP~d-g~~LaSgS-~DgtVrIWD 636 (755)
.....++.|+|+ .+|+++. .+++|.++|+.+++.+..+. |.+.-..+ ++| + +..+++.. .+++|.++|
T Consensus 341 ~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p-~~g~v~~t~~~g~~~Vsvid 418 (567)
T 1qks_A 341 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHP-TFGPVWATSHMGDDSVALIG 418 (567)
T ss_dssp CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EET-TTEEEEEEEBSSSSEEEEEE
T ss_pred cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECC-CCCcEEEeCCCCCCeEEEec
Confidence 345678899998 5555544 67899999999998877664 32222222 578 5 44445554 468999999
Q ss_pred CCC-------CcEEEeccCC-CCEEEEEEccCCCEEEEEEC-------CCcEEEEECCCC-----eee-ecccccccccc
Q 004404 637 IPE-------RQVVDWNDLH-EMVTAACYTPDGQGALVGSY-------KGSCHLYNTSEN-----KLQ-QKSPINLQNKK 695 (755)
Q Consensus 637 l~t-------~~~v~~~~~~-~~VtsvafSPdG~~LasGs~-------DG~I~lwDl~~~-----~~~-~~~~i~~~~~~ 695 (755)
..+ .+.+...... ..-..+.++|++++|++... ..+|.+||+.+. ... ..+.+. .-..
T Consensus 419 ~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~-~~~~ 497 (567)
T 1qks_A 419 TDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIA-EWAG 497 (567)
T ss_dssp CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHH-HHHT
T ss_pred CCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccc-cccc
Confidence 987 5666655443 33355789999999999763 359999999876 211 111100 0000
Q ss_pred ccCCCCCeEEEEEccCCCeEEEEEE----CCCcEEEEE--CCcceEEeecC
Q 004404 696 KRSHQRKITGFQFAPGSSSEVLVTS----ADSRIRVVD--GIDLVHKFKGE 740 (755)
Q Consensus 696 ~~~h~~~Vtsl~fsPdg~~~L~sgs----~Dg~IrVWD--~~~ll~~~~GH 740 (755)
+......+..+.|+|+|...+++.. .++.|.|+| +.+++..+++.
T Consensus 498 ~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 548 (567)
T 1qks_A 498 ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 548 (567)
T ss_dssp CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCCC
Confidence 1122457899999999995444432 379999999 57777777753
No 193
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.23 E-value=5.4e-09 Score=120.92 Aligned_cols=238 Identities=11% Similarity=0.110 Sum_probs=165.6
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCc--CCceeeeeecccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV--ESERKGELLEKQE 499 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~--t~~~~~~l~~~~~ 499 (755)
.++++...++.|.++|..+++..... . ....+..+.|+|||++|++++.|+.|.+||+. +.+.+.++
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i-----~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i----- 236 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVL-----D-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI----- 236 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEE-----E-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE-----
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEE-----e-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE-----
Confidence 34567778999999999877654333 2 23356799999999999999999999999984 44332222
Q ss_pred cCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec---
Q 004404 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS--- 576 (755)
Q Consensus 500 ~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s--- 576 (755)
.. ......++|+
T Consensus 237 ----------------------------------------------------------------~~-G~~P~~ia~s~~~ 251 (567)
T 1qks_A 237 ----------------------------------------------------------------KI-GSEARSIETSKME 251 (567)
T ss_dssp ----------------------------------------------------------------EC-CSEEEEEEECCST
T ss_pred ----------------------------------------------------------------ec-CCCCceeEEcccc
Confidence 11 1124578888
Q ss_pred -CC-cEEEEEe-CCCcEEEEECCCCcEEEEeec------------CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc
Q 004404 577 -KS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSH------------SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (755)
Q Consensus 577 -pd-~~LaSgs-~DgtVrLWDl~t~~~~~~~~h------------~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~ 641 (755)
|+ .+++++. .+++|.++|..+.+.++++.- ...+..+.+++....+++....+|+|.++|..+..
T Consensus 252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~ 331 (567)
T 1qks_A 252 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 331 (567)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence 57 4555544 569999999999999887751 12678899988334556666677999999998764
Q ss_pred EE--EeccCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 642 VV--DWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 642 ~v--~~~~~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
.. ..+........+.|+|+|++|+++. .++.|.++|+.++++...+.+- ....|.+.-..+ ++|++...+++
T Consensus 332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg----g~~Phpg~g~~~-~~p~~g~v~~t 406 (567)
T 1qks_A 332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG----GQTPHPGRGANF-VHPTFGPVWAT 406 (567)
T ss_dssp EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS----SSSBCCTTCEEE-EETTTEEEEEE
T ss_pred cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc----CcCCCCccceee-ECCCCCcEEEe
Confidence 32 3334455677899999999988766 5788999999999887654320 123455433233 68875534444
Q ss_pred EE-CCCcEEEEEC---------CcceEEeecC
Q 004404 719 TS-ADSRIRVVDG---------IDLVHKFKGE 740 (755)
Q Consensus 719 gs-~Dg~IrVWD~---------~~ll~~~~GH 740 (755)
+. .+++|.|+|+ .+.++++++.
T Consensus 407 ~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 407 SHMGDDSVALIGTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred CCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence 43 5689999993 4577877754
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.19 E-value=1.9e-09 Score=115.50 Aligned_cols=233 Identities=12% Similarity=-0.013 Sum_probs=149.2
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
..+.+....++.|.+||..+.+.... +. .......|+++++++++++...++.|.+||..+++....+......
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~~~~-----i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~ 127 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKEVGR-----IT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD 127 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEE-----EE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC
T ss_pred CEEEEEEcCCCEEEEEECcccEEEEE-----cC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc
Confidence 34445556679999999987665332 22 3467899999999865555548999999999988766655322100
Q ss_pred CccccEEEeecCCCCceecccc-CCCceeeecccccccccccccCcccccceeeec-CCCceEEeccCCCCEEEEEecCC
Q 004404 501 GHLNMLLLANGSPEPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS 578 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s-~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~k~i~~l~gH~~~V~~L~~spd 578 (755)
+.......+.+ .++.++++.. .+..+ .+++. +++.+..+.. ......+.++|+
T Consensus 128 ~~~~~p~~i~~-~~~~lyv~~~~~~~~v-----------------------~viD~~t~~~~~~i~~-g~~p~~i~~~~d 182 (328)
T 3dsm_A 128 MESGSTEQMVQ-YGKYVYVNCWSYQNRI-----------------------LKIDTETDKVVDELTI-GIQPTSLVMDKY 182 (328)
T ss_dssp TTTCBCCCEEE-ETTEEEEEECTTCCEE-----------------------EEEETTTTEEEEEEEC-SSCBCCCEECTT
T ss_pred ccCCCcceEEE-ECCEEEEEcCCCCCEE-----------------------EEEECCCCeEEEEEEc-CCCccceEEcCC
Confidence 00001111112 2334333322 12222 12222 2333344433 233567889998
Q ss_pred cEEEEEeCC-----------CcEEEEECCCCcEEEEeec--CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE-
Q 004404 579 QHLLSSSMD-----------KTVRLWHLSSKTCLKIFSH--SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD- 644 (755)
Q Consensus 579 ~~LaSgs~D-----------gtVrLWDl~t~~~~~~~~h--~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~- 644 (755)
+.++.++.. +.|.+||..+++....+.. ......++|+| ++++|+++.. .|.+||+.++++..
T Consensus 183 G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~~~~ 259 (328)
T 3dsm_A 183 NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRVPVR 259 (328)
T ss_dssp SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSCCSS
T ss_pred CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCceeee
Confidence 776666553 6899999999988877763 34789999999 8888887654 99999999887642
Q ss_pred -eccC-CCCEEEEEEccC-CCEEEEE----ECCCcEEEEECCCCeeeeccc
Q 004404 645 -WNDL-HEMVTAACYTPD-GQGALVG----SYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 645 -~~~~-~~~VtsvafSPd-G~~LasG----s~DG~I~lwDl~~~~~~~~~~ 688 (755)
+... ...+..++++|+ +..+++. ..++.|.+||.. ++++..+.
T Consensus 260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 1222 357899999995 5555554 468899999998 77776543
No 195
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.18 E-value=3.2e-10 Score=124.76 Aligned_cols=141 Identities=11% Similarity=0.031 Sum_probs=106.4
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE
Q 004404 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (755)
Q Consensus 566 H~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~-~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~ 644 (755)
+.. |+.|+| ....|+++ .++.|++||+.+....... .|...+.++.+.+ . .+++++.||.|.+||+.++....
T Consensus 87 lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~ 160 (388)
T 1xip_A 87 IPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ 160 (388)
T ss_dssp CTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE
T ss_pred CCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc
Confidence 445 999999 44777777 8899999999876544444 3778888888766 2 38889999999999999887654
Q ss_pred eccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCee--eeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL--QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 645 ~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~--~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
+...|++++|+|+| +++|..||.+++|+...... ..++..+.......+|...|.+|.|.+++. ++++
T Consensus 161 ---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~-flv~ 230 (388)
T 1xip_A 161 ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD-FLAV 230 (388)
T ss_dssp ---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE-EEEE
T ss_pred ---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe-EEEE
Confidence 34689999999999 78899999999999988775 333321111111124788999999999876 4444
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.15 E-value=1.6e-07 Score=96.94 Aligned_cols=260 Identities=8% Similarity=0.008 Sum_probs=166.2
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
.+.+....++.|..|+.. +++.. ..+..+...+.+|++.++|+++++...++.|.+|+.. ++. ..+.. ..
T Consensus 32 ~l~v~~~~~~~v~~~~~~-~~~~~----~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~---~~ 101 (300)
T 2qc5_A 32 KVWFTQHKANKISSLDQS-GRIKE----FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPL---PQ 101 (300)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEE----EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEEC---SS
T ss_pred CEEEEcCCCCeEEEECCC-CceEE----EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecC---CC
Confidence 344455567899999877 44332 1233455789999999999988877768899999987 443 22211 11
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCce-EEeccCCCCEEEEEecCCcE
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI-CSFQGHLDDVLDLSWSKSQH 580 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i-~~l~gH~~~V~~L~~spd~~ 580 (755)
.......+...+++.++++....+.+... +..++.. ..+......+..+++.+++.
T Consensus 102 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~-----------------------~~~g~~~~~~~~~~~~~~~~i~~d~~g~ 158 (300)
T 2qc5_A 102 PDSGPYGITEGLNGDIWFTQLNGDRIGKL-----------------------TADGTIYEYDLPNKGSYPAFITLGSDNA 158 (300)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEE-----------------------CTTSCEEEEECSSTTCCEEEEEECTTSS
T ss_pred CCCCCccceECCCCCEEEEccCCCeEEEE-----------------------CCCCCEEEccCCCCCCCceeEEECCCCC
Confidence 12445666777777777665433333211 1111111 11222345688999999855
Q ss_pred EEEEe-CCCcEEEEECCCCcEEEEe--ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec--cCCCCEEEE
Q 004404 581 LLSSS-MDKTVRLWHLSSKTCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAA 655 (755)
Q Consensus 581 LaSgs-~DgtVrLWDl~t~~~~~~~--~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~--~~~~~Vtsv 655 (755)
|+.+. .++.|..|+. +++..... .+...+.++++.+ ++.++++....+.|.+|+. +++..... .....+.++
T Consensus 159 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 235 (300)
T 2qc5_A 159 LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAI 235 (300)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEE
Confidence 55554 4788999998 55554422 1445789999999 8887777666788999998 55554432 234678999
Q ss_pred EEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 656 afSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+++++|+..++...++.|..|+.. +.... +. .......+.++++.++|. |..++.. .|..+|
T Consensus 236 ~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~-------~~~~~~~~~~i~~~~~g~--l~v~~~~-~i~~~~ 297 (300)
T 2qc5_A 236 TAGKNSEIWFTEWGANQIGRITND-NTIQE-YQ-------LQTENAEPHGITFGKDGS--VWFALKC-KIGKLN 297 (300)
T ss_dssp EECSTTCEEEEETTTTEEEEECTT-SCEEE-EE-------CCSTTCCCCCEEECTTSC--EEEECSS-EEEEEE
T ss_pred EECCCCCEEEeccCCCeEEEECCC-CcEEE-EE-------CCccCCccceeEeCCCCC--EEEEccC-ceEEeC
Confidence 999999866655567899999984 44332 11 112345678899999986 4444444 777666
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.15 E-value=4.2e-09 Score=107.93 Aligned_cols=227 Identities=10% Similarity=-0.063 Sum_probs=146.5
Q ss_pred EEE-EeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 423 VSF-HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 423 ~l~-sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
+.+ ....++.|..|+......... ...+...+.+|++.++|+++++.. ++.|.+|+....... .+ ...
T Consensus 37 l~v~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~----~~~ 105 (270)
T 1rwi_B 37 VYVTSEGMYGRVVKLATGSTGTTVL-----PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL----PFD 105 (270)
T ss_dssp EEEEECSSSCEEEEECC-----EEC-----CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC----CCC
T ss_pred EEEEccCCCCcEEEecCCCcccceE-----eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee----ecC
Confidence 444 446788999998754432111 123445688999999999666665 889999998654322 11 112
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEE
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~L 581 (755)
.......+.+.+++.++++....+.+....... .........+...+.+|++.+++.+
T Consensus 106 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~----------------------~~~~~~~~~~~~~p~~i~~~~~g~l 163 (270)
T 1rwi_B 106 GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS----------------------KTQTVLPFTGLNDPDGVAVDNSGNV 163 (270)
T ss_dssp SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC----------------------CSCEECCCCSCCSCCCEEECTTCCE
T ss_pred CcCCCcceEECCCCCEEEEECCCCEEEEEECCC----------------------ceeEeeccccCCCceeEEEeCCCCE
Confidence 223456777788887776654444443221110 0011111122345778999998555
Q ss_pred EEE-eCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-CCCCEEEEEEc
Q 004404 582 LSS-SMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYT 658 (755)
Q Consensus 582 aSg-s~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-~~~~VtsvafS 658 (755)
+.+ ..++.|.+||........... +...+.+|++++ ++.++++...++.|.+|+........... ....+.+++++
T Consensus 164 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~ 242 (270)
T 1rwi_B 164 YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD 242 (270)
T ss_dssp EEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEEC
T ss_pred EEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEEC
Confidence 544 457899999988766544332 446789999999 88877777778999999987765443322 23578999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCee
Q 004404 659 PDGQGALVGSYKGSCHLYNTSENKL 683 (755)
Q Consensus 659 PdG~~LasGs~DG~I~lwDl~~~~~ 683 (755)
|+|+.+++...++.|++|++...+.
T Consensus 243 ~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 243 SDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCCEEEEECCCCEEEEEcCCCccc
Confidence 9999888888899999999876543
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.15 E-value=1.1e-07 Score=104.08 Aligned_cols=260 Identities=7% Similarity=-0.038 Sum_probs=165.7
Q ss_pred EEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEE----------CCCcEEEEeCcCCceeeeeecc-ccc
Q 004404 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEK-QED 500 (755)
Q Consensus 432 ~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs----------~DGtVrVWdl~t~~~~~~l~~~-~~~ 500 (755)
.|.+||..+.+.. ..+..-..+ .++|+|||++|+.+. .++.|.+||..+.+...++... ...
T Consensus 48 ~v~v~D~~t~~~~-----~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAGSGSIL-----GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred EEEEEECCCCeEE-----EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence 8899998866643 334433344 899999999998886 3678999999988877665422 000
Q ss_pred -CccccEEEeecCCCCceeccccCC--CceeeecccccccccccccCcccccceeeecCCCceEE-eccCCCCEEEEEec
Q 004404 501 -GHLNMLLLANGSPEPTSLSPKHLD--NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS-FQGHLDDVLDLSWS 576 (755)
Q Consensus 501 -~~~~~v~~v~~s~dg~~l~~~s~d--~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~-l~gH~~~V~~L~~s 576 (755)
.....-..+.++|+++.+...... ..+. .+. .+++.+.. +... . ++.+.
T Consensus 121 ~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~----------------------viD-~t~~~~~~~i~~~-~---~~~~~ 173 (373)
T 2mad_H 121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVG----------------------LVV-QGGSSDDQLLSSP-T---CYHIH 173 (373)
T ss_pred cccCCCccceEECCCCCEEEEEecCCCCeEE----------------------EEE-CCCCEEeEEcCCC-c---eEEEE
Confidence 001122367889999888776432 2221 112 23333333 3211 1 13333
Q ss_pred CC--cEEEEEeCCCcEEEEECCCCcEEEEee------cCCce-EEEEEeeCCCcEEEEEECCCcEEEEECCCCcE--EEe
Q 004404 577 KS--QHLLSSSMDKTVRLWHLSSKTCLKIFS------HSDYV-TCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--VDW 645 (755)
Q Consensus 577 pd--~~LaSgs~DgtVrLWDl~t~~~~~~~~------h~~~V-tsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~--v~~ 645 (755)
|. ..+++.+.||++.++|. +++...... ...++ ....+.+ ++..++..+..+.|.+.|+.+... +..
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~v~vid~~~~~~~v~~~ 251 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYSGKILQADISAAGATNKAP 251 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe-cCCEEEEEcCCceEEEEeccCCcceEeee
Confidence 43 45677788999999999 777663321 11221 2345677 444444445788999999976532 221
Q ss_pred ccC-----------CCCEEEEEEccCCCEEEEEEC----------CCcEEEEECCCCeeeeccccccccccccCCCCCeE
Q 004404 646 NDL-----------HEMVTAACYTPDGQGALVGSY----------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (755)
Q Consensus 646 ~~~-----------~~~VtsvafSPdG~~LasGs~----------DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (755)
+.. ......++++|+++.|+++.. .+.|.++|+.+++.+..+.+ .....
T Consensus 252 ~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~----------g~~p~ 321 (373)
T 2mad_H 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL----------GHDVD 321 (373)
T ss_pred eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC----------CCCcC
Confidence 111 123445889999998888654 35799999999998876532 23578
Q ss_pred EEEEccCCCeEEEEEE-CCCcEEEEE--CCcceEEe
Q 004404 705 GFQFAPGSSSEVLVTS-ADSRIRVVD--GIDLVHKF 737 (755)
Q Consensus 705 sl~fsPdg~~~L~sgs-~Dg~IrVWD--~~~ll~~~ 737 (755)
+++|+|+|+.+++++. .++.|.||| +++.+.++
T Consensus 322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9999999985566666 589999999 56777763
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.13 E-value=2.3e-08 Score=105.31 Aligned_cols=221 Identities=15% Similarity=0.167 Sum_probs=144.1
Q ss_pred ecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeec
Q 004404 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 417 ~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
..+...++++....++|..|+..+++... + .+...+.+++++++|+++++. +..|.+||..+++... +..
T Consensus 21 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~~------~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~-~~~ 90 (297)
T 3g4e_A 21 EEVSNSLLFVDIPAKKVCRWDSFTKQVQR------V-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVV-LAT 90 (297)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEE------E-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEE-EEE
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCcEEE------E-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEE-EEe
Confidence 34455677888889999999988665421 1 245689999999999965553 5679999986654221 100
Q ss_pred ccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec
Q 004404 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
... . .....+.++++.
T Consensus 91 ~~~---------------------------------------------------------~-------~~~~~~~di~~d 106 (297)
T 3g4e_A 91 VDN---------------------------------------------------------D-------KKNNRFNDGKVD 106 (297)
T ss_dssp CCT---------------------------------------------------------T-------CSSEEEEEEEEC
T ss_pred cCC---------------------------------------------------------C-------CCCCCCCCEEEC
Confidence 000 0 001235677777
Q ss_pred CCcEEEEEeC----------CCcEEEEECCC-CcEEEEeecCCceEEEEEeeCCCcEE-EEEECCCcEEEEEC--CCCcE
Q 004404 577 KSQHLLSSSM----------DKTVRLWHLSS-KTCLKIFSHSDYVTCIQFNPVDDRYF-ISGSLDAKVRIWSI--PERQV 642 (755)
Q Consensus 577 pd~~LaSgs~----------DgtVrLWDl~t-~~~~~~~~h~~~VtsVafsP~dg~~L-aSgS~DgtVrIWDl--~t~~~ 642 (755)
|++.|+.+.. .....||.+.. ++......+....+.++|+| +++.| ++.+.++.|.+|++ .++.+
T Consensus 107 ~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 107 PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred CCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 7755555442 12334554442 34444444556678999999 88766 45566789999987 45543
Q ss_pred E--E-e---ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEc-cCCCeE
Q 004404 643 V--D-W---NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA-PGSSSE 715 (755)
Q Consensus 643 v--~-~---~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs-Pdg~~~ 715 (755)
. . + ......+..++++++|++.++....+.|..||..+++++..+. .+...+++++|. |+++.+
T Consensus 186 ~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~---------~p~~~~t~~~f~g~d~~~L 256 (297)
T 3g4e_A 186 SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK---------LPVDKTTSCCFGGKNYSEM 256 (297)
T ss_dssp EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE---------CSSSBEEEEEEESGGGCEE
T ss_pred cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE---------CCCCCceEEEEeCCCCCEE
Confidence 2 1 1 1223568899999999877777778889999999888776543 344679999998 888755
Q ss_pred EEEEEC
Q 004404 716 VLVTSA 721 (755)
Q Consensus 716 L~sgs~ 721 (755)
+++...
T Consensus 257 ~vt~~~ 262 (297)
T 3g4e_A 257 YVTCAR 262 (297)
T ss_dssp EEEEBC
T ss_pred EEEcCC
Confidence 555543
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.13 E-value=1.9e-07 Score=96.44 Aligned_cols=237 Identities=8% Similarity=0.026 Sum_probs=157.6
Q ss_pred ecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecc
Q 004404 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (755)
Q Consensus 453 ~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~ 532 (755)
......+.+|++.++|+++++...++.|.+|+.. ++.. .+.. .........+...+++.++++....+.+...
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~---~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~-- 88 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEV---PTPDAKVMCLIVSSLGDIWFTENGANKIGKL-- 88 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEEC---SSTTCCEEEEEECTTSCEEEEETTTTEEEEE--
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEEC---CCCCCcceeEEECCCCCEEEEecCCCeEEEE--
Confidence 3455688999999999988877778999999987 4432 2211 1223455667777777776665433333211
Q ss_pred cccccccccccCcccccceeeecCCCce-EEeccCCCCEEEEEecCCcEEEEEeC-CCcEEEEECCCCcEEEE-ee-cCC
Q 004404 533 GRSINRKSLSLDHMVVPETVFALSDKPI-CSFQGHLDDVLDLSWSKSQHLLSSSM-DKTVRLWHLSSKTCLKI-FS-HSD 608 (755)
Q Consensus 533 ~~~~~~~s~s~d~~~~~~~v~~~s~k~i-~~l~gH~~~V~~L~~spd~~LaSgs~-DgtVrLWDl~t~~~~~~-~~-h~~ 608 (755)
+..++.. ..+......+.++++.+++.++.+.. ++.|..|+.. ++.... +. ...
T Consensus 89 ---------------------d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 146 (300)
T 2qc5_A 89 ---------------------SKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS 146 (300)
T ss_dssp ---------------------CTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred ---------------------CCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence 1111111 11122335688999998865555554 7899999987 655432 22 456
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec--cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~--~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
.+.++++.+ +++++++...++.|..|+. +++..... .....+..+++.++|.+.++....+.|.+|+. ++.....
T Consensus 147 ~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 147 YPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY 223 (300)
T ss_dssp CEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE
Confidence 789999999 8887776666889999998 66655432 23357899999999977666666778999998 4443321
Q ss_pred cccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
. ...+...+.++++.++|. ++++...++.|.+||.
T Consensus 224 -~-------~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 224 -D-------IPTPNARPHAITAGKNSE-IWFTEWGANQIGRITN 258 (300)
T ss_dssp -E-------CSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECT
T ss_pred -E-------CCCCCCCceEEEECCCCC-EEEeccCCCeEEEECC
Confidence 1 113456789999999986 5555556789999995
No 201
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.12 E-value=6.3e-09 Score=123.33 Aligned_cols=220 Identities=10% Similarity=-0.013 Sum_probs=142.5
Q ss_pred ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cE
Q 004404 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (755)
Q Consensus 502 ~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~ 580 (755)
+...+..+.++||+..++......-- + .....++++..............+..++|+|+ ..
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~----------------~--~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGS----------------D--WVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKG 184 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTC----------------S--CEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSE
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCC----------------c--eEEEEEEECCCCCCCcccccCcccceEEEEeCCCE
Confidence 33467788999999988865332100 0 00003444433332222112223677999999 67
Q ss_pred EEEEeCCCc----------------EEEEECCCCcE--EEEee---cCCceEEEEEeeCCCcEEEEEEC-----CCcEEE
Q 004404 581 LLSSSMDKT----------------VRLWHLSSKTC--LKIFS---HSDYVTCIQFNPVDDRYFISGSL-----DAKVRI 634 (755)
Q Consensus 581 LaSgs~Dgt----------------VrLWDl~t~~~--~~~~~---h~~~VtsVafsP~dg~~LaSgS~-----DgtVrI 634 (755)
|+.++.++. |++|++.+++. ...+. +...+..+.|+| |+++|+..+. +..|++
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~ 263 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWY 263 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEE
Confidence 888888766 99999988762 23332 456688999999 9998888765 568999
Q ss_pred EECCC------C--cEEEeccCCCCEEEEEEccCCCEEEEEECC----CcEEEEECCCCeeeeccccccccccccCCCC-
Q 004404 635 WSIPE------R--QVVDWNDLHEMVTAACYTPDGQGALVGSYK----GSCHLYNTSENKLQQKSPINLQNKKKRSHQR- 701 (755)
Q Consensus 635 WDl~t------~--~~v~~~~~~~~VtsvafSPdG~~LasGs~D----G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~- 701 (755)
||+.+ + ....+..+...+.. .|+|+|+.|+..+.. +.|++||+.++...... .+..|..
T Consensus 264 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~-------~l~~~~~~ 335 (710)
T 2xdw_A 264 CDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK-------VLVPEHEK 335 (710)
T ss_dssp EEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE-------EEECCCSS
T ss_pred EECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccce-------eccCCCCC
Confidence 99976 4 34555555555544 588999988876653 36999999876421000 0113333
Q ss_pred -CeEEEEEccCCCeEEEEEECCCc--EEEEE--CCcceEEeecCCccEEEEEE
Q 004404 702 -KITGFQFAPGSSSEVLVTSADSR--IRVVD--GIDLVHKFKGENYVQYMVCI 749 (755)
Q Consensus 702 -~Vtsl~fsPdg~~~L~sgs~Dg~--IrVWD--~~~ll~~~~GH~~~V~sv~f 749 (755)
.|..+.|++++. ++++...|+. |++|| .++.+..+..+...+..+++
T Consensus 336 ~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~ 387 (710)
T 2xdw_A 336 DVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG 387 (710)
T ss_dssp CEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEEC
T ss_pred CeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEec
Confidence 688899996654 7777888885 55667 46677888888666776655
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.11 E-value=9.1e-09 Score=122.67 Aligned_cols=250 Identities=12% Similarity=0.025 Sum_probs=148.5
Q ss_pred cccCCEEEEEEcCCCCEEEEEECC-----CcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 454 AHNGSIWSIKFSLDGRYLASAGED-----CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTgs~D-----GtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
+|...+..++|||||++||.++.+ .+|++||+.+++....... ...+..+.|+|+ ..++....+....
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~------~~~~~~~~wspD-~~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK------WVKFSGLAWLGN-DALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE------EEESCCCEESTT-SEEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC------CceeccEEEECC-CEEEEEEecCccc
Confidence 455578899999999999887654 4699999998876433110 111235788999 7776654433210
Q ss_pred eecccccccccccccCcccccceeeecC-CC----ceEEeccCCCCEEEEEecCCc-EEEEEeCCC-----cEEEEECCC
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALS-DK----PICSFQGHLDDVLDLSWSKSQ-HLLSSSMDK-----TVRLWHLSS 597 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s-~k----~i~~l~gH~~~V~~L~~spd~-~LaSgs~Dg-----tVrLWDl~t 597 (755)
. .... . .... ....++.+. +. .+.....|...+..+.|+|++ +|+..+.++ .|++||+.+
T Consensus 233 ~----~~~~--~--~~~~-~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 233 G----QAFQ--A--LNYN-QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp --------------CCCC-CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred c----cccc--c--CCCC-CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence 0 0000 0 0000 000122221 11 222223344468899999994 666666443 899999987
Q ss_pred C--c-EEEEeecCCceEEEEEeeCCCcEEEEEECC----CcEEEEECCCC--cEEEeccCC-CCEEEEEEccCCCEEEEE
Q 004404 598 K--T-CLKIFSHSDYVTCIQFNPVDDRYFISGSLD----AKVRIWSIPER--QVVDWNDLH-EMVTAACYTPDGQGALVG 667 (755)
Q Consensus 598 ~--~-~~~~~~h~~~VtsVafsP~dg~~LaSgS~D----gtVrIWDl~t~--~~v~~~~~~-~~VtsvafSPdG~~LasG 667 (755)
+ + ......+...+.... .| +++.|+..+.+ +.|.+||+.++ ....+..+. ..+..+++. ++.++++.
T Consensus 304 ~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~ 380 (741)
T 1yr2_A 304 GKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASY 380 (741)
T ss_dssp TEECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEE
T ss_pred CCCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEE
Confidence 7 4 344444555555554 47 78888877764 45999999874 444444443 346677887 56677788
Q ss_pred ECCCcEEEEECC-CCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE---CCCcEEEEEC
Q 004404 668 SYKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS---ADSRIRVVDG 730 (755)
Q Consensus 668 s~DG~I~lwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs---~Dg~IrVWD~ 730 (755)
..++..+||.+. .+.....+.+ .+...|..+.++|+++.++++.+ ..++|++||.
T Consensus 381 ~~dg~~~l~~~~~~g~~~~~l~~--------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 381 IHDAKSQVLAFDLDGKPAGAVSL--------PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp EETTEEEEEEEETTSCEEEECBC--------SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred EECCEEEEEEEeCCCCceeeccC--------CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 888887776554 3333332211 23567889999999874444443 3478999993
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.09 E-value=8.6e-09 Score=113.32 Aligned_cols=232 Identities=8% Similarity=-0.032 Sum_probs=143.9
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcc--c---ceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceee
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDL--T---ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~--~---~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~ 492 (755)
.....++++|..+ .+.+|+...... . ..+..+....+.+ |+.|+| |+++|+++ .++.|++||+.+.....
T Consensus 46 s~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~ 120 (388)
T 1xip_A 46 SNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFR 120 (388)
T ss_dssp ETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEE
T ss_pred cCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccC
Confidence 3344556666666 444587643220 0 0011111234667 999999 99999999 88999999986544211
Q ss_pred eeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEE
Q 004404 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572 (755)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~ 572 (755)
. ...|...|.+
T Consensus 121 ~---------------------------------------------------------------------~~~~~~~v~~ 131 (388)
T 1xip_A 121 T---------------------------------------------------------------------VTSFEKPVFQ 131 (388)
T ss_dssp E---------------------------------------------------------------------EEECSSCEEE
T ss_pred c---------------------------------------------------------------------cceeecceee
Confidence 1 1123334556
Q ss_pred EEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE--EEec----
Q 004404 573 LSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWN---- 646 (755)
Q Consensus 573 L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~--v~~~---- 646 (755)
+.+.+.+ ++++..||+|.+||+..+.... +...|+|++|+| +| ++.|..||++++|+...+++ ...+
T Consensus 132 i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp 204 (388)
T 1xip_A 132 LKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPS 204 (388)
T ss_dssp EEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCH
T ss_pred EEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCc
Confidence 6665544 8889999999999999887654 456899999999 77 67899999999999888775 3333
Q ss_pred ------cCCCCEEEEEEccCCCEEEEEEC-----C------CcEEEEECCCCeeee-cc-cccccccc-ccCCCCCeEEE
Q 004404 647 ------DLHEMVTAACYTPDGQGALVGSY-----K------GSCHLYNTSENKLQQ-KS-PINLQNKK-KRSHQRKITGF 706 (755)
Q Consensus 647 ------~~~~~VtsvafSPdG~~LasGs~-----D------G~I~lwDl~~~~~~~-~~-~i~~~~~~-~~~h~~~Vtsl 706 (755)
.+...|.+|+|.+++++|++=.. + -.++|.....+.... .+ .+...... .+.|......+
T Consensus 205 ~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~~~f~~~~d~~~~fg~~~R~~~~~~~~l 284 (388)
T 1xip_A 205 ELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTL 284 (388)
T ss_dssp HHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEE
T ss_pred ccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCCceeEccccCcCCcCCccCCceeeeeeh
Confidence 25678999999999999987221 1 146666633333211 11 11111110 12232223333
Q ss_pred -EEccCCCeEEEEEECC-CcEEEEEC
Q 004404 707 -QFAPGSSSEVLVTSAD-SRIRVVDG 730 (755)
Q Consensus 707 -~fsPdg~~~L~sgs~D-g~IrVWD~ 730 (755)
.|.|+.+.++++++.- --|-|++.
T Consensus 285 ~~w~~~~~~l~iv~Ss~S~di~il~~ 310 (388)
T 1xip_A 285 SGLIEPDANVNVLASSCSSEVSIWDS 310 (388)
T ss_dssp EEEEETTEEEEEEEETTCSBCEEECS
T ss_pred hcccccCCcEEEEeCCCCcceEEecc
Confidence 4778776677777553 34666653
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.09 E-value=2.5e-08 Score=110.57 Aligned_cols=242 Identities=8% Similarity=0.001 Sum_probs=153.4
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCC--ceeeecccc
Q 004404 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN--HLEKKRRGR 534 (755)
Q Consensus 457 ~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~--~i~~~~~~~ 534 (755)
.....|+|+++++++++...++.|++||..++........ .... . +++++++..+......+ .+......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-----~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~- 202 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-----FKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKA- 202 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-----CCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGG-
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-----CCCC-c-eeEecCCCcEEEEecCCCceEEEEEcC-
Confidence 4678999999999888877789999999977654433211 1112 2 67788877665554433 22211111
Q ss_pred cccccccccCcccccceeeecCCCceEEe---cc-CCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEE----ee
Q 004404 535 SINRKSLSLDHMVVPETVFALSDKPICSF---QG-HLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKI----FS 605 (755)
Q Consensus 535 ~~~~~s~s~d~~~~~~~v~~~s~k~i~~l---~g-H~~~V~~L~~sp-d~~LaSgs~DgtVrLWDl~t~~~~~~----~~ 605 (755)
.......+ .. +...+.+++++| ++.|+.+..++.|+.||..++..... ..
T Consensus 203 ---------------------~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 203 ---------------------SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp ---------------------GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred ---------------------CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence 01111111 12 345678899999 58888888889999999987764333 11
Q ss_pred -cCCce--EEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC---------------CCCEEEEEEccCCCEEEEE
Q 004404 606 -HSDYV--TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL---------------HEMVTAACYTPDGQGALVG 667 (755)
Q Consensus 606 -h~~~V--tsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~---------------~~~VtsvafSPdG~~LasG 667 (755)
+...- ..++|+|.++.++++-...+.|+.|+.... ...+... -.....++++|+|+++++-
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad 340 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD 340 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence 22222 399999944666666677889999997654 3333222 1358899999999977776
Q ss_pred E-CCCcEEEEECCCCeeeeccccccc-----cccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 668 S-YKGSCHLYNTSENKLQQKSPINLQ-----NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 668 s-~DG~I~lwDl~~~~~~~~~~i~~~-----~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
. .++.|+.|++.++........... ............+|++.|++. ++++-..+++|+.++
T Consensus 341 ~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 341 GFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYA 407 (409)
T ss_dssp TTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEE
T ss_pred CCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEEEEE
Confidence 6 789999999888765432210000 000011235689999999974 666667788888765
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.08 E-value=3.2e-08 Score=103.54 Aligned_cols=241 Identities=10% Similarity=0.061 Sum_probs=144.1
Q ss_pred eCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC-CCEEEEEECCCcEEEEeCcCCceeeee-ecccccCccc
Q 004404 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGEL-LEKQEDGHLN 504 (755)
Q Consensus 427 g~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd-g~~LaTgs~DGtVrVWdl~t~~~~~~l-~~~~~~~~~~ 504 (755)
+..++.|..|+..+++...... ....++...+.+++++++ |+++++. ....|.+|+.. ++.. .+ ..........
T Consensus 42 ~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~-~~~~~~~~~~~~~ 117 (314)
T 1pjx_A 42 GKPAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFE-EIAKKDSEGRRMQ 117 (314)
T ss_dssp TEECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEE-ECCSBCTTSCBCB
T ss_pred CCCCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEE-EEEeccCCCcccc
Confidence 4667899999977666532211 111236678999999999 7655544 44478899987 5432 22 1111111223
Q ss_pred cEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec----CCc-
Q 004404 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS----KSQ- 579 (755)
Q Consensus 505 ~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s----pd~- 579 (755)
.+..+.+.+++.++++.......... .... .......-..++..++ +..+..+......++|+ |++
T Consensus 118 ~~~~i~~d~~g~l~v~~~~~~~~~~~-~~~~-------~~~~~~~l~~~~~~g~-~~~~~~~~~~~~~i~~~~~~d~dg~ 188 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPAGEVAPAD-YTRS-------MQEKFGSIYCFTTDGQ-MIQVDTAFQFPNGIAVRHMNDGRPY 188 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSC-CCBT-------TSSSCEEEEEECTTSC-EEEEEEEESSEEEEEEEECTTSCEE
T ss_pred CCcCEEECCCCCEEEEecCccccccc-cccc-------ccCCCCeEEEECCCCC-EEEeccCCCCcceEEEecccCCCCC
Confidence 45567778888777665432100000 0000 0000000011111222 22233334457889999 985
Q ss_pred EEEEE-eCCCcEEEEECC-CCcE-----EEEee-cC-CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-CC
Q 004404 580 HLLSS-SMDKTVRLWHLS-SKTC-----LKIFS-HS-DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LH 649 (755)
Q Consensus 580 ~LaSg-s~DgtVrLWDl~-t~~~-----~~~~~-h~-~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-~~ 649 (755)
.|+.+ ..++.|.+|++. .++. ...+. +. ..+..+++++ +++++++...++.|.+||..+++.+.... +.
T Consensus 189 ~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~ 267 (314)
T 1pjx_A 189 QLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF 267 (314)
T ss_dssp EEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSS
T ss_pred EEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC
Confidence 55544 567899999986 4432 22222 22 6688999999 89988888889999999998666543333 33
Q ss_pred CCEEEEEEccCCCEEEEEE-CCCcEEEEECCCC
Q 004404 650 EMVTAACYTPDGQGALVGS-YKGSCHLYNTSEN 681 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~ 681 (755)
..+.+++|+|+|+.|++++ .++.|..|++...
T Consensus 268 ~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 268 EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 6899999999999666655 4678999998754
No 206
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.06 E-value=4e-09 Score=124.78 Aligned_cols=239 Identities=9% Similarity=-0.029 Sum_probs=148.5
Q ss_pred CCCCEEEEEECCC---cEEEEeCc--CCceeeeeecc--cccCccccEEEeecCCCCceeccc-----cCCCceeeeccc
Q 004404 466 LDGRYLASAGEDC---VIHVWQVV--ESERKGELLEK--QEDGHLNMLLLANGSPEPTSLSPK-----HLDNHLEKKRRG 533 (755)
Q Consensus 466 pdg~~LaTgs~DG---tVrVWdl~--t~~~~~~l~~~--~~~~~~~~v~~v~~s~dg~~l~~~-----s~d~~i~~~~~~ 533 (755)
|+|++++....++ .-.||... .++ ...+... ...++...+..+.++||+..++.. .....+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i------ 149 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVL------ 149 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEE------
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEE------
Confidence 6777766665543 34555543 222 2222211 123445567889999999998843 222233
Q ss_pred ccccccccccCcccccceeeecCCCceEEeccCCCCE--EEEEecCC-cEEEEEeCCCc-------------EEEEECCC
Q 004404 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV--LDLSWSKS-QHLLSSSMDKT-------------VRLWHLSS 597 (755)
Q Consensus 534 ~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V--~~L~~spd-~~LaSgs~Dgt-------------VrLWDl~t 597 (755)
.++++....... ..+...+ ..++|+|+ ..|+.++.|.. |++|++.+
T Consensus 150 -----------------~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t 211 (695)
T 2bkl_A 150 -----------------HVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGT 211 (695)
T ss_dssp -----------------EEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTS
T ss_pred -----------------EEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCC
Confidence 233333222210 1122222 67899999 57888888776 99999998
Q ss_pred Cc--EEEEee---cCCceEEEEEeeCCCcEEEEEECCC----cEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEE
Q 004404 598 KT--CLKIFS---HSDYVTCIQFNPVDDRYFISGSLDA----KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGS 668 (755)
Q Consensus 598 ~~--~~~~~~---h~~~VtsVafsP~dg~~LaSgS~Dg----tVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs 668 (755)
+. ....+. +...+..+.|+| |+++|+..+.++ .|++|+..+++...+..+...+....+ ++|. |+..+
T Consensus 212 ~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s 288 (695)
T 2bkl_A 212 EPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLT 288 (695)
T ss_dssp CGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred CchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEE
Confidence 76 223332 556899999999 999888877666 688887777776666666666666666 6676 55544
Q ss_pred C----CCcEEEEECCCCeeeeccccccccccccCC-CCCeEEEEEccCCCeEEEEEECCCcEEEEE---CCcceEEeecC
Q 004404 669 Y----KGSCHLYNTSENKLQQKSPINLQNKKKRSH-QRKITGFQFAPGSSSEVLVTSADSRIRVVD---GIDLVHKFKGE 740 (755)
Q Consensus 669 ~----DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h-~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD---~~~ll~~~~GH 740 (755)
. ++.|++||+.++.......+ ...+ ...|..+.|+ ++ .++++...|+..+||. .++.+..+..+
T Consensus 289 ~~~~~~~~l~~~d~~~~~~~~~~~l------~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 360 (695)
T 2bkl_A 289 DEGAPRQRVFEVDPAKPARASWKEI------VPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQLP 360 (695)
T ss_dssp CTTCTTCEEEEEBTTBCSGGGCEEE------ECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEEECCCS
T ss_pred CCCCCCCEEEEEeCCCCCccCCeEE------ecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecCC
Confidence 3 57899999987643100000 1122 4567888888 44 3788888999888875 35556666554
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.04 E-value=1.2e-07 Score=99.75 Aligned_cols=176 Identities=10% Similarity=0.125 Sum_probs=121.2
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeec-----CCceEEEEEeeCCCcEEEEEECC---------CcEE
Q 004404 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSH-----SDYVTCIQFNPVDDRYFISGSLD---------AKVR 633 (755)
Q Consensus 568 ~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h-----~~~VtsVafsP~dg~~LaSgS~D---------gtVr 633 (755)
..+.++++++++.|+.+. +..|.+||..+++....... ...++.++++| +++++++.... ..-.
T Consensus 54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEE
T ss_pred CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcE
Confidence 357889999986666666 56899999988776544432 23588999999 88866654321 2334
Q ss_pred EEECC-CCcEEEeccCCCCEEEEEEccCCCEEEE-EECCCcEEEEEC--CCCeeeeccccccccccccCCCCCeEEEEEc
Q 004404 634 IWSIP-ERQVVDWNDLHEMVTAACYTPDGQGALV-GSYKGSCHLYNT--SENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (755)
Q Consensus 634 IWDl~-t~~~v~~~~~~~~VtsvafSPdG~~Las-Gs~DG~I~lwDl--~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (755)
||.+. .++.............++|+|+++.|++ .+.++.|.+|++ .++.+.....+ ..+..+...+.++++.
T Consensus 132 l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~----~~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 132 LYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV----YKLEKEEQIPDGMCID 207 (297)
T ss_dssp EEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE----EECCGGGCEEEEEEEB
T ss_pred EEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE----EECCCCCCCCCeeEEC
Confidence 55443 2444444444456789999999987765 455788999997 45544221100 1111234567899999
Q ss_pred cCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEEEEEEE
Q 004404 710 PGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 710 Pdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~sv~fs 750 (755)
++|. +.++....+.|.+|| +++++..+..+...+.+++|.
T Consensus 208 ~~G~-lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 208 AEGK-LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp TTSC-EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred CCCC-EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence 9996 666667788999999 478999999888889999996
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.03 E-value=1.4e-07 Score=100.87 Aligned_cols=173 Identities=8% Similarity=0.009 Sum_probs=119.3
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeec-----CCceEEEEEeeCCCcEEEEEEC------CCcEEEEEC
Q 004404 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSH-----SDYVTCIQFNPVDDRYFISGSL------DAKVRIWSI 637 (755)
Q Consensus 569 ~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h-----~~~VtsVafsP~dg~~LaSgS~------DgtVrIWDl 637 (755)
.+.++.|.+++.++.+..+ .|.+||..+++....... ...++.++++| +++++++... .+.|..++
T Consensus 91 ~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~- 167 (326)
T 2ghs_A 91 MGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA- 167 (326)
T ss_dssp CEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-
T ss_pred cceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-
Confidence 4788889998777777655 499999988876544332 23689999999 8887665542 24566666
Q ss_pred CCCcEEEeccCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECC--CC-eeeeccccccccccccCCCCCeEEEEEccCCC
Q 004404 638 PERQVVDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTS--EN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (755)
Q Consensus 638 ~t~~~v~~~~~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~--~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~ 713 (755)
+++...+.........++|+|+|+.|+++. .++.|++|++. ++ .+.....+ ..+......+.++++.++|.
T Consensus 168 -~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~----~~~~~~~~~p~gi~~d~~G~ 242 (326)
T 2ghs_A 168 -KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF----IDSTGIKGGMDGSVCDAEGH 242 (326)
T ss_dssp -TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE----EECTTSSSEEEEEEECTTSC
T ss_pred -CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEE----EECCCCCCCCCeeEECCCCC
Confidence 565544433334678999999999876654 56899999986 55 32110000 01112345578899999986
Q ss_pred eEEEEEECCCcEEEEE-CCcceEEeecCCccEEEEEEE
Q 004404 714 SEVLVTSADSRIRVVD-GIDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 714 ~~L~sgs~Dg~IrVWD-~~~ll~~~~GH~~~V~sv~fs 750 (755)
++++...++.|.+|| .++.+..+..+...+.+++|.
T Consensus 243 -lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 243 -IWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp -EEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEE
T ss_pred -EEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEe
Confidence 556566678999999 567788888887778888886
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.01 E-value=1.8e-07 Score=99.99 Aligned_cols=219 Identities=11% Similarity=0.020 Sum_probs=139.9
Q ss_pred ecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeec
Q 004404 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 417 ~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
..+...++++...++.|..|+..+++... +. +...|.+++|+++|+++++. .+ .|.+||..+++... +..
T Consensus 57 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~~------~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~-~~~ 126 (326)
T 2ghs_A 57 DPASGTAWWFNILERELHELHLASGRKTV------HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL-HAE 126 (326)
T ss_dssp ETTTTEEEEEEGGGTEEEEEETTTTEEEE------EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE-EEC
T ss_pred eCCCCEEEEEECCCCEEEEEECCCCcEEE------EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE-Eee
Confidence 34555677888888999999987654321 11 34679999999999877765 44 48889876554211 100
Q ss_pred ccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec
Q 004404 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
. .. ......+.+++++
T Consensus 127 ~----------------------------------------------------------~~------~~~~~~~~~i~~d 142 (326)
T 2ghs_A 127 L----------------------------------------------------------ES------DLPGNRSNDGRMH 142 (326)
T ss_dssp S----------------------------------------------------------ST------TCTTEEEEEEEEC
T ss_pred C----------------------------------------------------------CC------CCCCCCCCCEEEC
Confidence 0 00 0011236778888
Q ss_pred CCcEEEEEeC-------CCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEE-ECCCcEEEEECC--CC-cE---
Q 004404 577 KSQHLLSSSM-------DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG-SLDAKVRIWSIP--ER-QV--- 642 (755)
Q Consensus 577 pd~~LaSgs~-------DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSg-S~DgtVrIWDl~--t~-~~--- 642 (755)
|++.++.+.. .+.|..++ +++......+....+.++|+| +++.|+.+ +.++.|.+|++. ++ .+
T Consensus 143 ~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~ 219 (326)
T 2ghs_A 143 PSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKA 219 (326)
T ss_dssp TTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCC
T ss_pred CCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCc
Confidence 8865555543 24455555 455444334445678999999 88766544 557899999986 55 31
Q ss_pred --EEec-cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEc-cCCCeEEEE
Q 004404 643 --VDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA-PGSSSEVLV 718 (755)
Q Consensus 643 --v~~~-~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs-Pdg~~~L~s 718 (755)
.... .....+..++++++|.+.++...++.|.+|+. +++....+. .+...+++++|. |++..++++
T Consensus 220 ~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~---------~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 220 EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE---------VPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE---------CSCSBEEEEEEESTTSCEEEEE
T ss_pred eEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE---------CCCCCcEEEEEecCCCCEEEEE
Confidence 2111 23456788999999987777666789999998 455544332 344579999998 887744444
Q ss_pred EECC
Q 004404 719 TSAD 722 (755)
Q Consensus 719 gs~D 722 (755)
...+
T Consensus 290 ~~~~ 293 (326)
T 2ghs_A 290 SARE 293 (326)
T ss_dssp EBCT
T ss_pred ecCC
Confidence 4444
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.97 E-value=4e-08 Score=117.05 Aligned_cols=253 Identities=11% Similarity=0.021 Sum_probs=151.4
Q ss_pred CCCCEEEEEECCCc---EEEEeCcC----Cceeeeeeccc--ccCccccEEEeecCCCCceeccccCCCceeeecccccc
Q 004404 466 LDGRYLASAGEDCV---IHVWQVVE----SERKGELLEKQ--EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (755)
Q Consensus 466 pdg~~LaTgs~DGt---VrVWdl~t----~~~~~~l~~~~--~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~ 536 (755)
|+|++++....++. -.||.... +.....++... ..++...+....|+||+..++......--.
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e-------- 187 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD-------- 187 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS--------
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc--------
Confidence 77887776654433 56665542 22222222111 122334667889999999888764321000
Q ss_pred cccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCc--------------EEEEECCCCcE--
Q 004404 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKT--------------VRLWHLSSKTC-- 600 (755)
Q Consensus 537 ~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~Dgt--------------VrLWDl~t~~~-- 600 (755)
.....++++..........+...+..++|+|++.|+.++.++. |++|++.++..
T Consensus 188 ----------~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 257 (741)
T 1yr2_A 188 ----------WRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD 257 (741)
T ss_dssp ----------EEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGC
T ss_pred ----------eEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC
Confidence 0000334443333222221222235789999977777777654 99999987652
Q ss_pred EEEee---cCCceEEEEEeeCCCcEEEEEECCC-----cEEEEECCCC--c-EEEeccCCCCEEEEEEccCCCEEEEEEC
Q 004404 601 LKIFS---HSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPER--Q-VVDWNDLHEMVTAACYTPDGQGALVGSY 669 (755)
Q Consensus 601 ~~~~~---h~~~VtsVafsP~dg~~LaSgS~Dg-----tVrIWDl~t~--~-~v~~~~~~~~VtsvafSPdG~~LasGs~ 669 (755)
...+. +...+..+.|+| |+++|+..+.++ .|++||+.++ + ...+......+.... +|+|+.|+..+.
T Consensus 258 ~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~ 335 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSG 335 (741)
T ss_dssp EEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEEC
T ss_pred EEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEEC
Confidence 33343 334689999999 999888877554 8999999877 5 555555555555553 489999888776
Q ss_pred C----CcEEEEECCCCe--eeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE---CCcceEEeecC
Q 004404 670 K----GSCHLYNTSENK--LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD---GIDLVHKFKGE 740 (755)
Q Consensus 670 D----G~I~lwDl~~~~--~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD---~~~ll~~~~GH 740 (755)
+ +.|++||+.++. ....+ ..+...+.++.|. ++ .++++...|+..+||. .+..+..+..+
T Consensus 336 ~~~~~~~l~~~d~~~~~~~~~~l~---------~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 404 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGSTPRFDTVV---------PESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGKPAGAVSLP 404 (741)
T ss_dssp TTCTTCEEEEEECSSSSCEEEEEE---------CCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSCEEEECBCS
T ss_pred CCCCCCEEEEEeCCCCccccEEEe---------cCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCceeeccCC
Confidence 3 459999998752 22211 1344457778887 33 3778888898877774 35566666653
Q ss_pred -CccEEEEEE
Q 004404 741 -NYVQYMVCI 749 (755)
Q Consensus 741 -~~~V~sv~f 749 (755)
...+..+++
T Consensus 405 ~~~~v~~~~~ 414 (741)
T 1yr2_A 405 GIGSASGLSG 414 (741)
T ss_dssp SSCEEEEEEC
T ss_pred CCeEEEEeec
Confidence 444555554
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.97 E-value=1.1e-07 Score=104.28 Aligned_cols=267 Identities=7% Similarity=-0.002 Sum_probs=168.4
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEE----------CCCcEEEEeCcCCceeeeeeccc-
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQ- 498 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs----------~DGtVrVWdl~t~~~~~~l~~~~- 498 (755)
++.|.++|..+.+.... +..-..+ . |+++|||++|+.+. .++.|.+||..+.+...++....
T Consensus 58 ~~~V~ViD~~t~~v~~~-----I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g 130 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGM-----IDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA 130 (386)
T ss_dssp SEEEEEEETTTTEEEEE-----EEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCEEEEEECCCCeEEEE-----EECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc
Confidence 67999999886665433 3333344 4 99999999887775 36789999999998887764221
Q ss_pred cc-CccccEEEeecCCCCceeccccC--CCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEe
Q 004404 499 ED-GHLNMLLLANGSPEPTSLSPKHL--DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (755)
Q Consensus 499 ~~-~~~~~v~~v~~s~dg~~l~~~s~--d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~ 575 (755)
.. .....-..+.++|++..+..... ...+. .+...+.+.+.++.-.. . ...+
T Consensus 131 ~r~~~g~~P~~~a~spDGk~lyVan~~~~~~Vs----------------------VID~~t~~vv~tI~v~g--~-~~~~ 185 (386)
T 3sjl_D 131 PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVG----------------------VVDLEGKAFKRMLDVPD--C-YHIF 185 (386)
T ss_dssp CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEE----------------------EEETTTTEEEEEEECCS--E-EEEE
T ss_pred cccccCCCCceEEEcCCCCEEEEEEcCCCCeEE----------------------EEECCCCcEEEEEECCC--c-ceee
Confidence 00 00012234677888887766532 22221 12222334444443211 1 1122
Q ss_pred cCC--cEEEEEeCCCcEEEEECCC-CcEEEEee-c----CCceE-EEEEeeCCCcEEEEEECCCcEEEEECCCCcEE--E
Q 004404 576 SKS--QHLLSSSMDKTVRLWHLSS-KTCLKIFS-H----SDYVT-CIQFNPVDDRYFISGSLDAKVRIWSIPERQVV--D 644 (755)
Q Consensus 576 spd--~~LaSgs~DgtVrLWDl~t-~~~~~~~~-h----~~~Vt-sVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v--~ 644 (755)
|. ..+++.+.||++.+.++.. ++...+.. + ..++. ...|.+.++++++ .+.+|+|.+.|+.+.... .
T Consensus 186 -P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 186 -PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp -EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECC
T ss_pred -cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeec
Confidence 32 5677888999999999976 55433221 1 12222 2466532665544 666899999999776432 1
Q ss_pred ecc-----------CCCCEEEEEEccCCCEEEEEEC----------CCcEEEEECCCCeeeeccccccccccccCCCCCe
Q 004404 645 WND-----------LHEMVTAACYTPDGQGALVGSY----------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (755)
Q Consensus 645 ~~~-----------~~~~VtsvafSPdG~~LasGs~----------DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (755)
... .......++++|+++.|++... .+.|.++|+.+++.+..+.+ + ..+
T Consensus 264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v--------g--~~~ 333 (386)
T 3sjl_D 264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--------G--HEI 333 (386)
T ss_dssp CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--------E--EEE
T ss_pred ceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC--------C--CCc
Confidence 111 0123345788999999988753 25799999999999887653 2 367
Q ss_pred EEEEEccCCCeEEEEE-ECCCcEEEEE--CCcceEEeecC
Q 004404 704 TGFQFAPGSSSEVLVT-SADSRIRVVD--GIDLVHKFKGE 740 (755)
Q Consensus 704 tsl~fsPdg~~~L~sg-s~Dg~IrVWD--~~~ll~~~~GH 740 (755)
.+|+++|+++.+|+++ ..++.|.|+| +++.+.+++.-
T Consensus 334 ~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 334 DSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp CEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred ceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 8999999997456665 5589999999 57888877643
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.93 E-value=6.3e-08 Score=102.19 Aligned_cols=229 Identities=10% Similarity=0.104 Sum_probs=143.5
Q ss_pred eecccCCEEEEEEcCCCC-EEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeee
Q 004404 452 IQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 452 l~gH~~~I~sI~fSpdg~-~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
+..+........|+|+|+ ++++...++.|..|+. +++ ...+. ........+.+.+++.++++......+...
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~-----~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLL-----DATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEE-----ESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEe-----CCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 344556678899999998 6677777899999987 343 22221 122345677888888877765443333222
Q ss_pred cccccccccccccCcccccceeeecCCCceEEe----cc-CCCCEEEEEecCCcEEEE-----EeC-------------C
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSF----QG-HLDDVLDLSWSKSQHLLS-----SSM-------------D 587 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l----~g-H~~~V~~L~~spd~~LaS-----gs~-------------D 587 (755)
.. .++ +..+ .+ ....+.++++.+++.++. |.. .
T Consensus 113 ~~-----------------------~g~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~ 168 (305)
T 3dr2_A 113 DA-----------------------DGQ-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168 (305)
T ss_dssp CT-----------------------TSC-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred CC-----------------------CCC-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence 11 111 1111 11 113467899999966655 332 2
Q ss_pred CcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC------CcEEEEECCCCcEE---Ee-ccCCCCEEEEEE
Q 004404 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVV---DW-NDLHEMVTAACY 657 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D------gtVrIWDl~t~~~v---~~-~~~~~~Vtsvaf 657 (755)
+.|..||..+++..... .....+.++|+| +++.|+.+... +.|.+|++....+. .+ ......+..+++
T Consensus 169 ~~v~~~d~~~g~~~~~~-~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~ 246 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA-DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV 246 (305)
T ss_dssp EEEEEECSSSCCCEEEE-EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE
T ss_pred CeEEEEcCCCCcEEEEe-cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE
Confidence 56788887667655444 445678999999 89877777665 78999998765421 11 112344567899
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEE
Q 004404 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (755)
Q Consensus 658 SPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrV 727 (755)
+++|+ |++++.+ .|++|+.. ++.+..+. .+. .+..++|.|++. .|.+++.++..++
T Consensus 247 d~~G~-lwv~~~~-gv~~~~~~-g~~~~~~~---------~~~-~~~~~~f~~d~~-~L~it~~~~l~~~ 302 (305)
T 3dr2_A 247 DRGGW-LWSSSGT-GVCVFDSD-GQLLGHIP---------TPG-TASNCTFDQAQQ-RLFITGGPCLWML 302 (305)
T ss_dssp CTTSC-EEECCSS-EEEEECTT-SCEEEEEE---------CSS-CCCEEEECTTSC-EEEEEETTEEEEE
T ss_pred CCCCC-EEEecCC-cEEEECCC-CCEEEEEE---------CCC-ceeEEEEeCCCC-EEEEEcCCeEEEE
Confidence 99998 5555544 59999985 55444332 122 488899998887 5777766644443
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.89 E-value=8.4e-08 Score=113.53 Aligned_cols=244 Identities=11% Similarity=0.071 Sum_probs=144.2
Q ss_pred cccCCEEEEEEcCCCCEEEEE-----ECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 454 AHNGSIWSIKFSLDGRYLASA-----GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTg-----s~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
+|...|..++|||||++||-+ +...+|+|||+.+++....... . .....+.|+ |+..++....+..-
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~----~--~k~~~~~Ws-Dg~~l~y~~~~~~~- 197 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK----D--VKFSGISWL-GNEGFFYSSYDKPD- 197 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE----E--EESCCCEEE-TTTEEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC----C--ceeccEEEe-CCCEEEEEEecCcc-
Confidence 466789999999999988843 3335799999999875433110 0 012345678 87766655443210
Q ss_pred eecccccccccccccCcccccc--eeeecCC-----CceEEecc-CCCCEEEEEecCCc-EEE-EEeC---CCcEEEEEC
Q 004404 529 KKRRGRSINRKSLSLDHMVVPE--TVFALSD-----KPICSFQG-HLDDVLDLSWSKSQ-HLL-SSSM---DKTVRLWHL 595 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~--~v~~~s~-----k~i~~l~g-H~~~V~~L~~spd~-~La-Sgs~---DgtVrLWDl 595 (755)
... . .....+. ..+.+.. ..+..... |...+..+.|+|++ +|+ +.+. ...|++||+
T Consensus 198 ----~~~-----~--~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 198 ----GSE-----L--SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDL 266 (693)
T ss_dssp ------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEET
T ss_pred ----ccc-----c--cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEEC
Confidence 000 0 0000001 1122211 12233333 55567889999994 443 3332 258999999
Q ss_pred CCC--cEEEEeecCCceEEEEEeeCCCcEEE-EEECC---CcEEEEECCCCcE---EEeccCCCCEEEEEEccCCCEEEE
Q 004404 596 SSK--TCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLD---AKVRIWSIPERQV---VDWNDLHEMVTAACYTPDGQGALV 666 (755)
Q Consensus 596 ~t~--~~~~~~~h~~~VtsVafsP~dg~~La-SgS~D---gtVrIWDl~t~~~---v~~~~~~~~VtsvafSPdG~~Las 666 (755)
.++ .......+....... |++ ++..|+ ....+ +.|.++++.++.. ..+..+...+. .|++++++|+.
T Consensus 267 ~~~~~~~~~l~~~~~~~~~~-~~~-~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 267 SQENAPLLTVQGDLDADVSL-VDN-KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp TSTTCCCEEEECSSSSCEEE-EEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred CCCCCceEEEeCCCCceEEE-Eec-cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence 876 333333455555555 556 455444 44433 5799999987654 45555555554 89999998887
Q ss_pred EECCC---cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC---CCcEEEEE
Q 004404 667 GSYKG---SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA---DSRIRVVD 729 (755)
Q Consensus 667 Gs~DG---~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~---Dg~IrVWD 729 (755)
...++ .|++|++..+.... +.+ .....+..+.++|+++.++++.+. -++|..||
T Consensus 343 ~~~~~g~~~l~~~d~~g~~~~~-l~~--------p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 343 EYMVDATARVEQFDYEGKRVRE-VAL--------PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp EEEETTEEEEEEECTTSCEEEE-ECC--------SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred EEEECCeeEEEEEECCCCeeEE-eec--------CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 66544 68999988654322 211 334567788888888754444433 27899998
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.86 E-value=1.4e-06 Score=95.38 Aligned_cols=216 Identities=8% Similarity=-0.060 Sum_probs=131.3
Q ss_pred CCcEEEEeeCCCCcccceeeee---EeecccCCEEEEEEcCCCCEEEEEEC--CCcEEEEeCcCCceeee-eecccccCc
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQ---EIQAHNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGE-LLEKQEDGH 502 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q---~l~gH~~~I~sI~fSpdg~~LaTgs~--DGtVrVWdl~t~~~~~~-l~~~~~~~~ 502 (755)
.+..|.+||..+.+........ ... +...-..+.|+|||++|+.+.. ++.|.++| .+++.... +... +
T Consensus 95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~-~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---~- 168 (373)
T 2mad_H 95 RTDYVEVFDPVTFLPIADIELPDAPRFD-VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---T- 168 (373)
T ss_pred CCCeEEEEECCCCcEEEEEECCCccccc-cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---c-
Confidence 4678889988755443222110 000 1123458999999999998874 57899999 98887666 4211 1
Q ss_pred cccEEE--------eecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEec-----cCCCC
Q 004404 503 LNMLLL--------ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-----GHLDD 569 (755)
Q Consensus 503 ~~~v~~--------v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~-----gH~~~ 569 (755)
.+.. +...+++.++.... .++.+.... ....+
T Consensus 169 --~~~~~~~~~~~~~~~~~dg~~~~vd~---------------------------------~g~~~~~~~~~~~~~~~~p 213 (373)
T 2mad_H 169 --CYHIHPGAPSTFYLLCAQGGLAKTDH---------------------------------AGGAAGAGLVGAMLTAAQN 213 (373)
T ss_pred --eEEEEeCCCceEEEEcCCCCEEEEEC---------------------------------CCcEEEEEeccccccCCcc
Confidence 0111 11222222222211 111110000 01111
Q ss_pred E-EEEEecCC-cEEEEEeCCCcEEEEECCCCc--EEEEee-----------cCCceEEEEEeeCCCcEEEEEEC------
Q 004404 570 V-LDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CLKIFS-----------HSDYVTCIQFNPVDDRYFISGSL------ 628 (755)
Q Consensus 570 V-~~L~~spd-~~LaSgs~DgtVrLWDl~t~~--~~~~~~-----------h~~~VtsVafsP~dg~~LaSgS~------ 628 (755)
+ ....+.++ +.++..+..+.|.+.|+.... .+..+. .......+.++| +++.++.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~ 292 (373)
T 2mad_H 214 LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWK 292 (373)
T ss_pred eeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEEeccCCccc
Confidence 1 22334444 444444477899999987542 223332 123344578999 7777777543
Q ss_pred ----CCcEEEEECCCCcEEEeccCCCCEEEEEEccCCC-EEEEEE-CCCcEEEEECCCCeeeec
Q 004404 629 ----DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQ-GALVGS-YKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 629 ----DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~-~LasGs-~DG~I~lwDl~~~~~~~~ 686 (755)
.+.|.++|+.+++++..+........++|+|||+ .++++. .++.|.+||+.+++.+..
T Consensus 293 ~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 293 LHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 3579999999999987777777899999999999 777777 489999999999988765
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.85 E-value=2.5e-07 Score=102.92 Aligned_cols=263 Identities=8% Similarity=-0.009 Sum_probs=166.9
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEE----------CCCcEEEEeCcCCceeeeeecc-cc
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEK-QE 499 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs----------~DGtVrVWdl~t~~~~~~l~~~-~~ 499 (755)
+.|.++|..+.+...... .-..+ .|+++|||++|+.+. .++.|.++|..+.+...++... ..
T Consensus 99 ~~VsVID~~t~~vv~~I~-----vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTD-----GGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTTTEEEEEEE-----ECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCCCEEEEEEE-----CCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 799999998776544333 22345 799999999888775 4679999999999888776421 00
Q ss_pred cC-ccccEEEeecCCCCceeccccC--CCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec
Q 004404 500 DG-HLNMLLLANGSPEPTSLSPKHL--DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 500 ~~-~~~~v~~v~~s~dg~~l~~~s~--d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
.. ....-..+.++|++..+..... ...+. .+...+.+.+..+.--. . ....
T Consensus 172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~Vs----------------------VID~~t~kvv~~I~v~g--~--~~~~ 225 (426)
T 3c75_H 172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVG----------------------VVDLEGKTFDRMLDVPD--C--YHIF 225 (426)
T ss_dssp CCCBSCCGGGSEECTTSSEEEEEECSSSCEEE----------------------EEETTTTEEEEEEECCS--E--EEEE
T ss_pred ccccCCCcceEEEcCCCCEEEEEecCCCCeEE----------------------EEECCCCeEEEEEEcCC--c--eeec
Confidence 00 0011234677888877766532 12221 11112333344443211 1 1222
Q ss_pred CC--cEEEEEeCCCcEEEEECCCCcEEEE----ee-cCCce-EEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-
Q 004404 577 KS--QHLLSSSMDKTVRLWHLSSKTCLKI----FS-HSDYV-TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND- 647 (755)
Q Consensus 577 pd--~~LaSgs~DgtVrLWDl~t~~~~~~----~~-h~~~V-tsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~- 647 (755)
|+ ..+++.+.||++.+.+..+++.... +. ...++ ..+.|.+ ++..++..+..++|.+.|+..........
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~ 304 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPI 304 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCE
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeee
Confidence 32 5567777888888888866655432 22 11121 2356788 77777777788999999987655331110
Q ss_pred -C-----------CCCEEEEEEccCCCEEEEEEC----------CCcEEEEECCCCeeeeccccccccccccCCCCCeEE
Q 004404 648 -L-----------HEMVTAACYTPDGQGALVGSY----------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (755)
Q Consensus 648 -~-----------~~~VtsvafSPdG~~LasGs~----------DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (755)
. ......++++|+++.|++... .+.|.++|+.+.+.+..+.+ + ....+
T Consensus 305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v--------g--~~P~g 374 (426)
T 3c75_H 305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL--------G--HEIDS 374 (426)
T ss_dssp ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--------E--EEECE
T ss_pred eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC--------C--CCcCe
Confidence 0 011223789999998888653 35799999999998887643 1 24788
Q ss_pred EEEccCCCeEEEEEE-CCCcEEEEE--CCcceEEe
Q 004404 706 FQFAPGSSSEVLVTS-ADSRIRVVD--GIDLVHKF 737 (755)
Q Consensus 706 l~fsPdg~~~L~sgs-~Dg~IrVWD--~~~ll~~~ 737 (755)
+.|+|+++.+++++. .++.|.|+| +++.++++
T Consensus 375 ia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 375 INVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999999985566666 699999999 57888886
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.84 E-value=3.6e-07 Score=96.30 Aligned_cols=234 Identities=9% Similarity=0.038 Sum_probs=137.3
Q ss_pred ecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeec
Q 004404 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 417 ~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
..++..+++++..++.|..|+.. ++. +.+..+...+..++++++|+++++...++.|.+|+.. ++ ...+..
T Consensus 53 ~~~g~~l~~~d~~~~~i~~~~~~-g~~------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~~~~ 123 (305)
T 3dr2_A 53 WEAQRTLVWSDLVGRRVLGWRED-GTV------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHLLVG 123 (305)
T ss_dssp EGGGTEEEEEETTTTEEEEEETT-SCE------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEEC
T ss_pred eCCCCEEEEEECCCCEEEEEeCC-CCE------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEEEEe
Confidence 34555577888899999999873 332 2234466789999999999977666566889999975 43 222221
Q ss_pred ccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCccccccee--eecCCCceEEeccCCCCEEEEE
Q 004404 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV--FALSDKPICSFQGHLDDVLDLS 574 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v--~~~s~k~i~~l~gH~~~V~~L~ 574 (755)
.......+.+..+.+.+++.++++....+...... ... ... . .....+ ++.....+..+. +......++
T Consensus 124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~-~~~---~~~--~--~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~ 194 (305)
T 3dr2_A 124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQ-GCP---ADP--E--LAHHSVYRLPPDGSPLQRMA-DLDHPNGLA 194 (305)
T ss_dssp EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGG-SCC---CCC--S--SSCEEEEEECSSSCCCEEEE-EESSEEEEE
T ss_pred ccCCCccCCCCCEEECCCCCEEEeCcCCCcccccc-ccc---ccc--c--cCCCeEEEEcCCCCcEEEEe-cCCCCcceE
Confidence 11111123344567778887776532111100000 000 000 0 000011 122112222222 345578899
Q ss_pred ecCC-cEEEEEeCC------CcEEEEECCCCcEE--EEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE
Q 004404 575 WSKS-QHLLSSSMD------KTVRLWHLSSKTCL--KIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (755)
Q Consensus 575 ~spd-~~LaSgs~D------gtVrLWDl~t~~~~--~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v 643 (755)
|+|+ ..|+.+... +.|++|++..+... ..+. .......+++.+ ++++.+ +..+ .|.+|+.. ++.+
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv-~~~~-gv~~~~~~-g~~~ 270 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWS-SSGT-GVCVFDSD-GQLL 270 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEE-CCSS-EEEEECTT-SCEE
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEE-ecCC-cEEEECCC-CCEE
Confidence 9999 456666654 78999998765411 1221 244566789998 888544 4444 59999984 5555
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEECCCc
Q 004404 644 DWNDLHEMVTAACYTPDGQGALVGSYKGS 672 (755)
Q Consensus 644 ~~~~~~~~VtsvafSPdG~~LasGs~DG~ 672 (755)
..+.....+..++|+|+++.|++++.++.
T Consensus 271 ~~~~~~~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 271 GHIPTPGTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EEEECSSCCCEEEECTTSCEEEEEETTEE
T ss_pred EEEECCCceeEEEEeCCCCEEEEEcCCeE
Confidence 55545557899999999999999887543
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.80 E-value=5.9e-07 Score=96.60 Aligned_cols=182 Identities=10% Similarity=0.058 Sum_probs=118.1
Q ss_pred cCCCCEEEEEecCCcEEEEEeC------CCcEEEEECCCCcEEEEeec-------CCceEEEEEeeCCCcEEEEEE---C
Q 004404 565 GHLDDVLDLSWSKSQHLLSSSM------DKTVRLWHLSSKTCLKIFSH-------SDYVTCIQFNPVDDRYFISGS---L 628 (755)
Q Consensus 565 gH~~~V~~L~~spd~~LaSgs~------DgtVrLWDl~t~~~~~~~~h-------~~~VtsVafsP~dg~~LaSgS---~ 628 (755)
+|...+..|++.+++.|+.... ++.|.+||+.+++.+..+.. ...+..|+++|.++..+++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3556789999999877776654 47899999999988777752 245789999982344455555 6
Q ss_pred CCcEEEEECCCCcEEEeccC------------------------------CCCEEEEEEccCCCEEEEEECCC-cEEEEE
Q 004404 629 DAKVRIWSIPERQVVDWNDL------------------------------HEMVTAACYTPDGQGALVGSYKG-SCHLYN 677 (755)
Q Consensus 629 DgtVrIWDl~t~~~v~~~~~------------------------------~~~VtsvafSPdG~~LasGs~DG-~I~lwD 677 (755)
++.|.+||+.+++...+... ...+..|+|+|+|+.|+++...+ .++.++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 78999999998877664422 12368899999999999987766 454444
Q ss_pred CC---CCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC--CcceEEeecC-CccEEEEEE
Q 004404 678 TS---ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGE-NYVQYMVCI 749 (755)
Q Consensus 678 l~---~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~--~~ll~~~~GH-~~~V~sv~f 749 (755)
.. .+.... ..+. ......++.....++++.++|. ++++...++.|.+||. +++....... -....+++|
T Consensus 224 ~~~~~~~~~~~-~~~~-~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~ 298 (343)
T 2qe8_A 224 SADLSNLQLTD-AELG-SKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF 298 (343)
T ss_dssp HHHHTCTTCCH-HHHH-TTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred HHHhcCCCCCh-hhhh-cceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence 32 111000 0000 0000113344567899999986 7777788899999996 4433333221 234666666
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.75 E-value=1.6e-07 Score=102.89 Aligned_cols=228 Identities=10% Similarity=-0.035 Sum_probs=143.2
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeec-----ccCCEEEEEEcCCCCEEEEEEC--CCcEEEEeCcCCceeeeeecccccC
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQA-----HNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~g-----H~~~I~sI~fSpdg~~LaTgs~--DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
.+..|.+||..+.+...... +.. ....-..+.|+|||++|+.+.. ++.|.|+|+.+.+.+.++......+
T Consensus 107 ~~~~VsviD~~t~~v~~~I~---v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~ 183 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTADIE---LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH 183 (386)
T ss_dssp EEEEEEEECTTTCCEEEEEE---ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred CCCEEEEEECCCCeEEEEEE---CCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcce
Confidence 46789999998766543322 111 0123557999999999888864 6899999999999888774211000
Q ss_pred --ccccEEEeecCCCCceeccccCC-CceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEE-EEEec-
Q 004404 502 --HLNMLLLANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL-DLSWS- 576 (755)
Q Consensus 502 --~~~~v~~v~~s~dg~~l~~~s~d-~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~-~L~~s- 576 (755)
....-..+..++++.++...... +.+.... . .++... ...+. ...|.
T Consensus 184 ~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~-----------------~~~~~~----------~~~~~~~~~~~~ 235 (386)
T 3sjl_D 184 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-T-----------------EVFHPE----------DEFLINHPAYSQ 235 (386)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-C-----------------CCCSCT----------TSCBCSCCEEET
T ss_pred eecCCCceeEEECCCCCEEEEECCCCCeEEEee-c-----------------ceeccc----------cccccccceeEc
Confidence 00000122445566555544322 2220000 0 000000 01111 12443
Q ss_pred CCcEEEEEeCCCcEEEEECCCCc--EEEEee-----------cCCceEEEEEeeCCCcEEEEEEC----------CCcEE
Q 004404 577 KSQHLLSSSMDKTVRLWHLSSKT--CLKIFS-----------HSDYVTCIQFNPVDDRYFISGSL----------DAKVR 633 (755)
Q Consensus 577 pd~~LaSgs~DgtVrLWDl~t~~--~~~~~~-----------h~~~VtsVafsP~dg~~LaSgS~----------DgtVr 633 (755)
+++.++..+.+|+|++.|+..+. .+..+. .......++++| +++.++.... ..+|.
T Consensus 236 ~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~ 314 (386)
T 3sjl_D 236 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVV 314 (386)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEE
Confidence 56777678889999999997654 222221 123344577898 7777776542 25799
Q ss_pred EEECCCCcEEEeccCCCCEEEEEEccCCC-EEEEEEC-CCcEEEEECCCCeeeeccc
Q 004404 634 IWSIPERQVVDWNDLHEMVTAACYTPDGQ-GALVGSY-KGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 634 IWDl~t~~~v~~~~~~~~VtsvafSPdG~-~LasGs~-DG~I~lwDl~~~~~~~~~~ 688 (755)
++|+.+++++..+.....+..|+++||++ +|++... ++.|.++|..+++.+..+.
T Consensus 315 viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 315 VLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp EEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 99999999998877777899999999997 7777654 8999999999999887654
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.72 E-value=7.4e-06 Score=90.63 Aligned_cols=223 Identities=11% Similarity=0.056 Sum_probs=139.5
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCC--cEEEEeCcCCceeeeeecccc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC--VIHVWQVVESERKGELLEKQE 499 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DG--tVrVWdl~t~~~~~~l~~~~~ 499 (755)
.++++...++.|+.|+...+.+..+.. . ..... ++|++++++|+.+..++ .|.+|+.........+.. ..
T Consensus 143 ~lyv~d~~~~~I~~id~~~g~~~~~~~-----~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~-~~ 214 (409)
T 3hrp_A 143 TVLAYQRDDPRVRLISVDDNKVTTVHP-----G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ-LG 214 (409)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-----T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE-CC
T ss_pred CEEEEecCCCcEEEEECCCCEEEEeec-----c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee-cc
Confidence 456666778999999988666543322 2 22233 99999999999988876 788888765543222200 00
Q ss_pred cCccccEEEeecCC-CCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEe-----ccCCCCE-E-
Q 004404 500 DGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-----QGHLDDV-L- 571 (755)
Q Consensus 500 ~~~~~~v~~v~~s~-dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l-----~gH~~~V-~- 571 (755)
.........+++.+ ++.+++ ....+.+... +........+ .++...- .
T Consensus 215 ~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~-----------------------d~~~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 215 STFSGKIGAVALDETEEWLYF-VDSNKNFGRF-----------------------NVKTQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp TTSCSCCCBCEECTTSSEEEE-ECTTCEEEEE-----------------------ETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred chhcCCcEEEEEeCCCCeEEE-EECCCcEEEE-----------------------ECCCCCEEEEecccccCCCCCCccc
Confidence 11123334566677 455554 3233333221 1111111111 1222222 2
Q ss_pred EEEecCC-cEEE-EEeCCCcEEEEECCCCcEEEEeecC---------------CceEEEEEeeCCCcEEEEEE-CCCcEE
Q 004404 572 DLSWSKS-QHLL-SSSMDKTVRLWHLSSKTCLKIFSHS---------------DYVTCIQFNPVDDRYFISGS-LDAKVR 633 (755)
Q Consensus 572 ~L~~spd-~~La-Sgs~DgtVrLWDl~t~~~~~~~~h~---------------~~VtsVafsP~dg~~LaSgS-~DgtVr 633 (755)
.|+|+|+ +.|+ +-...+.|+.|+.... ......+. .....|+|+| +++++++-. .++.|+
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~ 348 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLR 348 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEE
Confidence 8999994 6555 4456789999997643 33333332 4588999999 888877777 889999
Q ss_pred EEECCCCcEEEeccC---------------CCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 004404 634 IWSIPERQVVDWNDL---------------HEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (755)
Q Consensus 634 IWDl~t~~~v~~~~~---------------~~~VtsvafSPdG~~LasGs~DG~I~lwDl 678 (755)
.|++.++.+..+... -..+..++++|+|.++++-..+++|+.+.+
T Consensus 349 ~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 349 KLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 999888876655443 146899999999877777777888888775
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.68 E-value=2.3e-06 Score=101.24 Aligned_cols=157 Identities=8% Similarity=0.105 Sum_probs=110.5
Q ss_pred EEEecCC-cEEEEEeCCCc-------------------EEEEECCCCcEEEEee---cC-------CceEEEEEeeCCCc
Q 004404 572 DLSWSKS-QHLLSSSMDKT-------------------VRLWHLSSKTCLKIFS---HS-------DYVTCIQFNPVDDR 621 (755)
Q Consensus 572 ~L~~spd-~~LaSgs~Dgt-------------------VrLWDl~t~~~~~~~~---h~-------~~VtsVafsP~dg~ 621 (755)
.+++.|+ ++++.+..++. |..||..+|+.+..+. |. .++....... +++
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCc
Confidence 5677775 88888887764 9999999999998875 21 1222223333 554
Q ss_pred ---EEEEEECCCcEEEEECCCCcEEEeccCCC--C--------------------------------------EEEEEEc
Q 004404 622 ---YFISGSLDAKVRIWSIPERQVVDWNDLHE--M--------------------------------------VTAACYT 658 (755)
Q Consensus 622 ---~LaSgS~DgtVrIWDl~t~~~v~~~~~~~--~--------------------------------------VtsvafS 658 (755)
.++.++.+|.|+++|..+++++....... . -..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999999873211110 0 1137899
Q ss_pred cCCCEEEEEEC---------------------------------------------CCcEEEEECCCCeeeecccccccc
Q 004404 659 PDGQGALVGSY---------------------------------------------KGSCHLYNTSENKLQQKSPINLQN 693 (755)
Q Consensus 659 PdG~~LasGs~---------------------------------------------DG~I~lwDl~~~~~~~~~~i~~~~ 693 (755)
|+..+|++... +|.|+.||+.+++.+.....
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---- 473 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---- 473 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE----
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC----
Confidence 98888887632 37799999999998775432
Q ss_pred ccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecC
Q 004404 694 KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGE 740 (755)
Q Consensus 694 ~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH 740 (755)
+ ..+..-.+...+. ++++++.|+.|+.|| +++++-+++..
T Consensus 474 -----~-~~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 474 -----V-TIFNGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp -----S-SSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred -----C-CCccCccceECCC-EEEEECCCCcEEEEECCCCccceeeeCC
Confidence 1 1222224455555 789999999999999 68999888755
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.68 E-value=8e-07 Score=97.11 Aligned_cols=261 Identities=9% Similarity=-0.052 Sum_probs=159.7
Q ss_pred EEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEE----------CCCcEEEEeCcCCceeeeeecccccC
Q 004404 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 432 ~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs----------~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
+|.++|..+.+...... .-..+ .+.|+||+++|+.+. .+++|.+||+.+.+...++.......
T Consensus 47 ~vsvID~~t~~v~~~i~-----vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSL-----GAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEEEEE-----ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCCCeEEEEEe-----CCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 88899988776544332 22345 799999999888886 37899999999999888874220000
Q ss_pred --ccccEEEeecCCCCceeccccCC--CceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC
Q 004404 502 --HLNMLLLANGSPEPTSLSPKHLD--NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 502 --~~~~v~~v~~s~dg~~l~~~s~d--~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp 577 (755)
....-..+.++|+++.++..... ..+.. .+++... +..+.-- + . +...|
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V---------------------~~iD~~t--v~~i~v~-~-~--~~~~p 172 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGL---------------------SVPGASD--DQLTKSA-S-C--FHIHP 172 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCEEEE---------------------EETTTEE--EEEEECS-S-C--CCCEE
T ss_pred cccCCCcceEEEcCCCCEEEEEccCCCCeEEE---------------------EEEchhh--ceEEECC-C-c--eEEcc
Confidence 00112356778888877765432 11211 0011100 1122110 0 0 11223
Q ss_pred C--cEEEEEeCCCcEEEEECCC-----CcEEE----Eee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc--EE
Q 004404 578 S--QHLLSSSMDKTVRLWHLSS-----KTCLK----IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VV 643 (755)
Q Consensus 578 d--~~LaSgs~DgtVrLWDl~t-----~~~~~----~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~--~v 643 (755)
+ ..+++.+.|+++.+.|+.+ ++... .+. ...+. . .+ ++..++..+. ++|.+.|+.+.. .+
T Consensus 173 ~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~-~~~~~~~vs~-~~V~viD~~~~~~~v~ 246 (368)
T 1mda_H 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-AN-YPGMLVWAVA-SSILQGDIPAAGATMK 246 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ET-TTTEEEECBS-SCCEEEECCSSCCEEE
T ss_pred CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cc-cCCEEEEEcC-CEEEEEECCCCcceEE
Confidence 2 4566667788888888876 33221 111 22333 3 55 5565666666 999999997543 22
Q ss_pred EeccCC-----------CCEEEEEEccCCCEEEEEEC-C--------CcEEEEECCCCeeeeccccccccccccCCCCCe
Q 004404 644 DWNDLH-----------EMVTAACYTPDGQGALVGSY-K--------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (755)
Q Consensus 644 ~~~~~~-----------~~VtsvafSPdG~~LasGs~-D--------G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (755)
...... .....++|+|+++.|+++.. . +.+.++|+.+.+.+..+.+ + ...
T Consensus 247 ~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v--------g--~~p 316 (368)
T 1mda_H 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--------G--HDS 316 (368)
T ss_dssp CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--------E--EEE
T ss_pred EEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC--------C--CCc
Confidence 221111 11112689999999988654 2 3567999999998876543 1 257
Q ss_pred EEEEEccCCCeEEEEEE-CCCcEEEEE--CCcceEEeecCCc
Q 004404 704 TGFQFAPGSSSEVLVTS-ADSRIRVVD--GIDLVHKFKGENY 742 (755)
Q Consensus 704 tsl~fsPdg~~~L~sgs-~Dg~IrVWD--~~~ll~~~~GH~~ 742 (755)
.+++|+|+|+.++++.. .++.|.|+| +++.+.+++....
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence 89999999986677777 699999999 5788888875544
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.66 E-value=1.7e-06 Score=102.16 Aligned_cols=158 Identities=5% Similarity=0.067 Sum_probs=113.4
Q ss_pred EEEecCC-cEEEEEeCCC-------------------cEEEEECCCCcEEEEee---cC-------CceEEEEEeeCCC-
Q 004404 572 DLSWSKS-QHLLSSSMDK-------------------TVRLWHLSSKTCLKIFS---HS-------DYVTCIQFNPVDD- 620 (755)
Q Consensus 572 ~L~~spd-~~LaSgs~Dg-------------------tVrLWDl~t~~~~~~~~---h~-------~~VtsVafsP~dg- 620 (755)
.+++.|+ +.++.+..++ +|..+|..+++.+..+. |. .....+.... ++
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~ 325 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGK 325 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCc
Confidence 5677776 7777777664 59999999999998876 21 2233344444 66
Q ss_pred --cEEEEEECCCcEEEEECCCCcEEEeccCC--C----------CE------------------------EEEEEccCCC
Q 004404 621 --RYFISGSLDAKVRIWSIPERQVVDWNDLH--E----------MV------------------------TAACYTPDGQ 662 (755)
Q Consensus 621 --~~LaSgS~DgtVrIWDl~t~~~v~~~~~~--~----------~V------------------------tsvafSPdG~ 662 (755)
..++.++.+|.|+++|..+++++...... . .+ ..++|+|++.
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 68999999999999999999987433211 0 01 1578999988
Q ss_pred EEEEEECC-------------------------------------------CcEEEEECCCCeeeeccccccccccccCC
Q 004404 663 GALVGSYK-------------------------------------------GSCHLYNTSENKLQQKSPINLQNKKKRSH 699 (755)
Q Consensus 663 ~LasGs~D-------------------------------------------G~I~lwDl~~~~~~~~~~i~~~~~~~~~h 699 (755)
++++...+ |.|..||+.+++.+.....
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---------- 475 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---------- 475 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----------
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----------
Confidence 88886532 7799999999998775431
Q ss_pred CCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCC
Q 004404 700 QRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGEN 741 (755)
Q Consensus 700 ~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~ 741 (755)
...+.+..+...+. ++++++.|+.|++|| +++++.+|+-..
T Consensus 476 ~~~~~~g~~~~~g~-~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 476 VSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp SSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCcCcceEeCCC-EEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 22333444566666 788899999999999 689998888543
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.62 E-value=2.1e-06 Score=101.45 Aligned_cols=239 Identities=12% Similarity=0.116 Sum_probs=146.4
Q ss_pred eeecCCCcEEEE----eCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCc-----------
Q 004404 415 SATDDSQDVSFH----GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCV----------- 479 (755)
Q Consensus 415 s~~~ds~~~l~s----g~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGt----------- 479 (755)
..++|++.++++ |.+...|++||+.+++.... .+.+. ....++|+ ||+.|+.++.+..
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~----~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~ 207 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET----PLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ 207 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE----EEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc----ccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence 455666666553 44557899999998875332 12211 12467899 9999999988744
Q ss_pred --EEEEeCcCCceeeeeecccccC-ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecC
Q 004404 480 --IHVWQVVESERKGELLEKQEDG-HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS 556 (755)
Q Consensus 480 --VrVWdl~t~~~~~~l~~~~~~~-~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s 556 (755)
|++|++.+......++.. ... +......+.+++++..++.......- ...+ .++++.
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~-~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-----~~~i--------------~~~d~~ 267 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFG-AIPAQHHRYVGATVTEDDRFLLISAANSTS-----GNRL--------------YVKDLS 267 (693)
T ss_dssp CEEEEEETTSCGGGCEEEES-CSGGGCCSEEEEEECTTSCEEEEEEESSSS-----CCEE--------------EEEETT
T ss_pred cEEEEEECCCCcccceEEEe-cCCCCCeEEEEEEEcCCCCEEEEEEccCCC-----CcEE--------------EEEECC
Confidence 999999876543332211 122 23445678899999877553221110 0000 122222
Q ss_pred CC--ceEEeccCCCCEEEEEecC-CcEEE-EEeCC---CcEEEEECCCCcE---EEEeecCCceEEEEEeeCCCcEEEEE
Q 004404 557 DK--PICSFQGHLDDVLDLSWSK-SQHLL-SSSMD---KTVRLWHLSSKTC---LKIFSHSDYVTCIQFNPVDDRYFISG 626 (755)
Q Consensus 557 ~k--~i~~l~gH~~~V~~L~~sp-d~~La-Sgs~D---gtVrLWDl~t~~~---~~~~~h~~~VtsVafsP~dg~~LaSg 626 (755)
.. ....+..+....... |++ .+.|+ ....+ +.|.++++.++.. .....|...+. .|++ ++++|+..
T Consensus 268 ~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~~ 343 (693)
T 3iuj_A 268 QENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS-GSGYLFAE 343 (693)
T ss_dssp STTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE-ETTEEEEE
T ss_pred CCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE-ECCEEEEE
Confidence 21 345556666666555 444 35544 44443 6799999988654 33344655555 8888 77777666
Q ss_pred ECCC---cEEEEECCCCcEEEec-cCCCCEEEEEEccCCCEEEEEECC----CcEEEEECCCCeee
Q 004404 627 SLDA---KVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYK----GSCHLYNTSENKLQ 684 (755)
Q Consensus 627 S~Dg---tVrIWDl~t~~~v~~~-~~~~~VtsvafSPdG~~LasGs~D----G~I~lwDl~~~~~~ 684 (755)
..++ .|++|++..+....+. .....+..+.++|+++.|+....+ +.|+.||+.+++..
T Consensus 344 ~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 344 YMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 5544 6899998866544432 234567788888988877765544 78999999887643
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.61 E-value=3.7e-05 Score=82.94 Aligned_cols=274 Identities=8% Similarity=0.004 Sum_probs=154.7
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEee--cc--cCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ--AH--NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~--gH--~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~ 497 (755)
..++.+..++.|..+|..+++..-.+....-. .+ ...+.+.- ..++..|+.++.++.|..+|..+++........
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 45677778889999999877754322211000 00 22232222 224567888889999999999999876654321
Q ss_pred cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCE-----EE
Q 004404 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV-----LD 572 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V-----~~ 572 (755)
.. ....++. .++.+++ +..++.+.... ..+++.+..+....... ..
T Consensus 133 ~~-~~~~p~~-----~~~~v~v-~~~~g~l~~~d----------------------~~tG~~~W~~~~~~~~~~~~~~~~ 183 (376)
T 3q7m_A 133 GE-ALSRPVV-----SDGLVLI-HTSNGQLQALN----------------------EADGAVKWTVNLDMPSLSLRGESA 183 (376)
T ss_dssp SC-CCSCCEE-----ETTEEEE-ECTTSEEEEEE----------------------TTTCCEEEEEECCC-----CCCCC
T ss_pred Cc-eEcCCEE-----ECCEEEE-EcCCCeEEEEE----------------------CCCCcEEEEEeCCCCceeecCCCC
Confidence 11 0011110 0222222 21222221111 11222222222211100 01
Q ss_pred EEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCce-----EE---EEEee-CCCcEEEEEECCCcEEEEECCCCcEE
Q 004404 573 LSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYV-----TC---IQFNP-VDDRYFISGSLDAKVRIWSIPERQVV 643 (755)
Q Consensus 573 L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~V-----ts---VafsP-~dg~~LaSgS~DgtVrIWDl~t~~~v 643 (755)
.... ++.++.+..++.|..+|..+++.+..+....+. .. +...| ..+..++.++.++.|..+|..+++.+
T Consensus 184 ~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~ 262 (376)
T 3q7m_A 184 PTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM 262 (376)
T ss_dssp CEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE
T ss_pred cEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE
Confidence 1111 477888899999999999999988777532110 00 10111 02467778888999999999999887
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC
Q 004404 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (755)
Q Consensus 644 ~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg 723 (755)
..... .....+.. ++..|++++.++.|+.+|..+++....... .....+...... + . .|++++.++
T Consensus 263 w~~~~-~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~--------~~~~~~~~~~~~-~-~-~l~v~~~~g 328 (376)
T 3q7m_A 263 WKREL-GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD--------LLHRLLTSPVLY-N-G-NLVVGDSEG 328 (376)
T ss_dssp EEECC-CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT--------TTTSCCCCCEEE-T-T-EEEEECTTS
T ss_pred eeccC-CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc--------cCCCcccCCEEE-C-C-EEEEEeCCC
Confidence 44433 33444444 467888999999999999999987754321 011112222222 2 3 688999999
Q ss_pred cEEEEE--CCcceEEeecC
Q 004404 724 RIRVVD--GIDLVHKFKGE 740 (755)
Q Consensus 724 ~IrVWD--~~~ll~~~~GH 740 (755)
.|.+|| +++++.++...
T Consensus 329 ~l~~~d~~tG~~~~~~~~~ 347 (376)
T 3q7m_A 329 YLHWINVEDGRFVAQQKVD 347 (376)
T ss_dssp EEEEEETTTCCEEEEEECC
T ss_pred eEEEEECCCCcEEEEEecC
Confidence 999999 57777777653
No 225
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.60 E-value=1.1e-05 Score=83.90 Aligned_cols=202 Identities=6% Similarity=0.019 Sum_probs=137.6
Q ss_pred ccC--CEEEEEEcCCCCEEEEEEC--CCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeee
Q 004404 455 HNG--SIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (755)
Q Consensus 455 H~~--~I~sI~fSpdg~~LaTgs~--DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~ 530 (755)
|.. ....|.|++++.++++.+. ++.|++.|+.+++....+...
T Consensus 17 ~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~--------------------------------- 63 (266)
T 2iwa_A 17 HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD--------------------------------- 63 (266)
T ss_dssp CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC---------------------------------
T ss_pred CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC---------------------------------
Confidence 553 3689999998765555553 579999999988866654200
Q ss_pred cccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecC-Cc
Q 004404 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHS-DY 609 (755)
Q Consensus 531 ~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~-~~ 609 (755)
.+ .....+++..+..+++.-.++.|.++|..+.+.+.++... ..
T Consensus 64 ----------------------------------~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~ 108 (266)
T 2iwa_A 64 ----------------------------------DS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD 108 (266)
T ss_dssp ----------------------------------TT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS
T ss_pred ----------------------------------CC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC
Confidence 00 0012344443344445556899999999999999998644 22
Q ss_pred eEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC------CCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCe
Q 004404 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMVTAACYTPDGQGALVGS-YKGSCHLYNTSENK 682 (755)
Q Consensus 610 VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~------~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~ 682 (755)
...+.+ |++.++.+..+++|.++|..+.+.+...... ..++.+.|. +| .|++.. .++.|.+.|+.+++
T Consensus 109 --g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 109 --GWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp --CCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCC
T ss_pred --eEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCc
Confidence 234566 6666666667899999999998877544332 247788888 67 455544 57899999999999
Q ss_pred eeeccccccccc----cccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 683 LQQKSPINLQNK----KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 683 ~~~~~~i~~~~~----~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
....+.+..... .........++|+|+|+++.+++++....+|.+.+
T Consensus 184 V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 184 LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 888765421000 00112246799999999987777777888998887
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.59 E-value=2.7e-06 Score=100.61 Aligned_cols=133 Identities=11% Similarity=0.129 Sum_probs=95.9
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCC--ce--------------------------------------EEEEEeeCC
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSD--YV--------------------------------------TCIQFNPVD 619 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~h~~--~V--------------------------------------tsVafsP~d 619 (755)
.++.++.+|.|+++|..+|+.+....... .. ..++|+| +
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~ 399 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-D 399 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-C
Confidence 68889999999999999999885443110 11 1268888 6
Q ss_pred CcEEEEEEC---------------------------------------------CCcEEEEECCCCcEEEeccCCCCEEE
Q 004404 620 DRYFISGSL---------------------------------------------DAKVRIWSIPERQVVDWNDLHEMVTA 654 (755)
Q Consensus 620 g~~LaSgS~---------------------------------------------DgtVrIWDl~t~~~v~~~~~~~~Vts 654 (755)
..+|++... +|+|+.||+.+++++-...+...+..
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~ 479 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG 479 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC
Confidence 667776532 37899999999998855555555555
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 655 vafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
..+...+..+++|+.||.++.||.++++++..+.+ ++.....-+.|..+|+.++++.+.
T Consensus 480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~--------~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA--------ASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC--------SSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ccceECCCEEEEECCCCcEEEEECCCCccceeeeC--------CCCcccCceEEEECCEEEEEEEec
Confidence 56667788999999999999999999999876542 222222345677888866666654
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.57 E-value=7e-07 Score=93.94 Aligned_cols=261 Identities=13% Similarity=0.096 Sum_probs=150.4
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
...++.++.++.|..|+ .+++....+ ..+...+.++.+.++|. |+.++.+ |..+|. +++....+....
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~~~~~-----~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~-- 97 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSVKWFF-----KSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKK-- 97 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCEEESS-----CGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC----
T ss_pred CCeEEEEcCCCEEEEEC-CCCcEEEEE-----ecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCC--
Confidence 34467777777888888 555532211 22344567788877776 4444444 888885 554433321110
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcE
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH 580 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~ 580 (755)
..... ..+. ++.+.+.. .++.+. .++..++.+..+..+...+.++...+++.
T Consensus 98 ~~~~~-~~~~---~~~l~v~t-~~~~l~-----------------------~~d~~g~~~~~~~~~~~~~~~~~~~~~g~ 149 (330)
T 3hxj_A 98 AIVSD-FTIF---EDILYVTS-MDGHLY-----------------------AINTDGTEKWRFKTKKAIYATPIVSEDGT 149 (330)
T ss_dssp ---CC-EEEE---TTEEEEEC-TTSEEE-----------------------EECTTSCEEEEEECSSCCCSCCEECTTSC
T ss_pred CcccC-ceEE---CCEEEEEe-cCCEEE-----------------------EEcCCCCEEEEEcCCCceeeeeEEcCCCE
Confidence 00000 1111 33333222 122111 11112223333333344455666677788
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEc
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYT 658 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafS 658 (755)
|+.++.++.|..||.. ++.+..+. ....+.++.+.+ ++.+++ ++ +.|..|| .+++.. ........+.+++..
T Consensus 150 l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~ 223 (330)
T 3hxj_A 150 IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS 223 (330)
T ss_dssp EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEEC
T ss_pred EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEEC
Confidence 8899999999999998 87776665 445667777766 666444 44 8899999 666655 333334567788888
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE-CCcceEEe
Q 004404 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-GIDLVHKF 737 (755)
Q Consensus 659 PdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD-~~~ll~~~ 737 (755)
++| .|++++.++.|..+|. ++.....+. .....+..+.+.+++ .|.+++.++.|..+| .++.+..+
T Consensus 224 ~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~---------~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 224 EDG-TIYVTSLDGHLYAINP-DGTEKWRFK---------TGKRIESSPVIGNTD--TIYFGSYDGHLYAINPDGTEKWNF 290 (330)
T ss_dssp TTS-CEEEEETTTEEEEECT-TSCEEEEEE---------CSSCCCSCCEECTTS--CEEEECTTCEEEEECTTSCEEEEE
T ss_pred CCC-eEEEEcCCCeEEEECC-CCCEeEEee---------CCCCccccceEcCCC--eEEEecCCCCEEEECCCCcEEEEE
Confidence 887 5666777888988875 444443322 112223334556566 488888898999999 45666665
Q ss_pred ecC
Q 004404 738 KGE 740 (755)
Q Consensus 738 ~GH 740 (755)
...
T Consensus 291 ~~~ 293 (330)
T 3hxj_A 291 ETG 293 (330)
T ss_dssp ECS
T ss_pred EcC
Confidence 543
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.55 E-value=4e-06 Score=99.02 Aligned_cols=134 Identities=10% Similarity=0.094 Sum_probs=98.2
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecC--C----------ce------------------------EEEEEeeCCCcE
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHS--D----------YV------------------------TCIQFNPVDDRY 622 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~h~--~----------~V------------------------tsVafsP~dg~~ 622 (755)
..++.++.+|.|+++|..+++.+..+... . ++ ..++|+| +..+
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~ 406 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGL 406 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTE
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCE
Confidence 46888999999999999999998776511 1 11 1468898 7777
Q ss_pred EEEEEC-------------------------------------------CCcEEEEECCCCcEEEeccCCCCEEEEEEcc
Q 004404 623 FISGSL-------------------------------------------DAKVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (755)
Q Consensus 623 LaSgS~-------------------------------------------DgtVrIWDl~t~~~v~~~~~~~~VtsvafSP 659 (755)
|++... .+.|..||+.+++++-...+...+....+.+
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~ 486 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT 486 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEe
Confidence 777543 2789999999999886555555566666777
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 660 dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
.+..+++++.+|.+++||+.+++.+..+.+ ++.....-+.|.++|+.++++.+.
T Consensus 487 ~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~--------~~~~~~~p~~y~~~G~~~v~~~~G 540 (677)
T 1kb0_A 487 AGNVVFQGTADGRLVAYHAATGEKLWEAPT--------GTGVVAAPSTYMVDGRQYVSVAVG 540 (677)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEEC--------SSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCEEEEECCCCcEEEEECCCCceeeeeeC--------CCCcccCCEEEEeCCEEEEEEecc
Confidence 888999999999999999999999887643 222223345567888755555443
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.55 E-value=5.6e-05 Score=77.64 Aligned_cols=243 Identities=8% Similarity=-0.016 Sum_probs=139.0
Q ss_pred cEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEE-ECCCcEEEEeCcCCceeeeeecccccCccccEEEe
Q 004404 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (755)
Q Consensus 431 g~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTg-s~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v 509 (755)
..|+.+++.............+......+..++|++++..|+.+ ...+.|.++++...... .+.. ........+
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~----~~~~~p~~i 84 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIR----QDLGSPEGI 84 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEEC----TTCCCEEEE
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EEEE----CCCCCccEE
Confidence 47888887655432211011111123457899999976655544 45789999998654322 2211 111233455
Q ss_pred ecCCC-CceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEe-ccCCCCEEEEEecCC-cEEEEEeC
Q 004404 510 NGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLSWSKS-QHLLSSSM 586 (755)
Q Consensus 510 ~~s~d-g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l-~gH~~~V~~L~~spd-~~LaSgs~ 586 (755)
++.++ +.++++......+.. +...++....+ .........++++|+ +.|+.+..
T Consensus 85 a~d~~~~~lyv~d~~~~~I~~-----------------------~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 85 ALDHLGRTIFWTDSQLDRIEV-----------------------AKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEE-----------------------EETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred EEEecCCeEEEEECCCCEEEE-----------------------EEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence 66664 334433333333221 11122111111 111245789999995 77766654
Q ss_pred C---CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEE-EEEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccC
Q 004404 587 D---KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYF-ISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (755)
Q Consensus 587 D---gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~L-aSgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPd 660 (755)
. +.|..+++.... ...+. .-.....++++| ++..| ++-...+.|.++|+.......+.........+++.
T Consensus 142 ~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-- 217 (267)
T 1npe_A 142 NRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-- 217 (267)
T ss_dssp CSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--
T ss_pred CCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--
Confidence 3 688888876433 23332 335688999999 65555 45555688999999865544443333455677664
Q ss_pred CCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCC
Q 004404 661 GQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (755)
Q Consensus 661 G~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~ 713 (755)
+..|+++. ..+.|..+|..+++....+.. +......++++.|++.
T Consensus 218 ~~~lyva~~~~~~v~~~d~~~g~~~~~i~~--------g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 218 GKNLYYTDWKTNSVIAMDLAISKEMDTFHP--------HKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEECC--------SSCCCCCCEEEECSCC
T ss_pred CCEEEEEECCCCeEEEEeCCCCCceEEEcc--------ccccccceeeecCccC
Confidence 55666655 468999999999988766431 2222466778888753
No 230
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.53 E-value=2.1e-05 Score=81.31 Aligned_cols=192 Identities=11% Similarity=0.087 Sum_probs=126.6
Q ss_pred cccCC--EEEEEEcCCCCEEEEEECCC--cEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceee
Q 004404 454 AHNGS--IWSIKFSLDGRYLASAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (755)
Q Consensus 454 gH~~~--I~sI~fSpdg~~LaTgs~DG--tVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~ 529 (755)
.|... ...|.|+ ++.++.+.+.+| .|+++|+.+++...++.... ..
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-----------------~~------------ 87 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-----------------RY------------ 87 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-----------------TC------------
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-----------------cc------------
Confidence 35543 4889998 777777888776 89999999988766542100 00
Q ss_pred ecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCc
Q 004404 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609 (755)
Q Consensus 530 ~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~ 609 (755)
.--.++...+..++..-.++.+.+||..+.+.+.++.....
T Consensus 88 ---------------------------------------FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e 128 (262)
T 3nol_A 88 ---------------------------------------FGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE 128 (262)
T ss_dssp ---------------------------------------CEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred ---------------------------------------ceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC
Confidence 00112222233333444688999999999999999985443
Q ss_pred eEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC------CCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCe
Q 004404 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMVTAACYTPDGQGALVGS-YKGSCHLYNTSENK 682 (755)
Q Consensus 610 VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~------~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~ 682 (755)
-..++ + ++..|+....+++|.++|..+.+++..+... ..++.+.|. +|+ |++.. .+..|.+.|..+++
T Consensus 129 G~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 129 GWGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGK 203 (262)
T ss_dssp CCCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCB
T ss_pred ceEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCc
Confidence 34444 4 6676666666888999999998887554331 345667776 675 55554 58899999999999
Q ss_pred eeecccccccccc---ccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 683 LQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 683 ~~~~~~i~~~~~~---~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
....+.+.-.... ........++|+|.|+++. |++++
T Consensus 204 V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~-lfVTG 243 (262)
T 3nol_A 204 VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR-LFVTG 243 (262)
T ss_dssp EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE-EEEEE
T ss_pred EEEEEECCcCccccccccCcCCceEEEEEcCCCCE-EEEEC
Confidence 9887764311111 1122346799999999884 55544
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.51 E-value=1.5e-05 Score=86.09 Aligned_cols=256 Identities=10% Similarity=0.055 Sum_probs=146.1
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..++.+..++.|..+|..+++..-.+. +.+. ......+. +..++.++.++.|..+|..+++............
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~---~~~~--~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTK---VAGE--ALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEE---CSSC--CCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEe---CCCc--eEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 456777888999999998777543222 1111 11111121 4478888899999999999998776653211100
Q ss_pred ----ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCC-------CCE
Q 004404 502 ----HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL-------DDV 570 (755)
Q Consensus 502 ----~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~-------~~V 570 (755)
...++.. ++.+++ +..++.+.... ..+++.+..+.... ..+
T Consensus 177 ~~~~~~~~~~~-----~~~v~~-g~~~g~l~~~d----------------------~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 177 SLRGESAPTTA-----FGAAVV-GGDNGRVSAVL----------------------MEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp --CCCCCCEEE-----TTEEEE-CCTTTEEEEEE----------------------TTTCCEEEEEECCC----------
T ss_pred eecCCCCcEEE-----CCEEEE-EcCCCEEEEEE----------------------CCCCcEEEEEecccCCCCcccccc
Confidence 0111100 222222 22222221111 01222222221110 000
Q ss_pred EEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc
Q 004404 571 LDLSWSK---SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647 (755)
Q Consensus 571 ~~L~~sp---d~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~ 647 (755)
..+...| ++.++.++.++.|..+|..+++.+...... ....+.. ++..++.++.++.|..+|..+++.+....
T Consensus 229 ~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 229 SDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-SVNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp -CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-CEEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred cccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-CCCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 0011111 478888899999999999999988776533 3444444 45678888899999999999998774333
Q ss_pred -CC-CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcE
Q 004404 648 -LH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (755)
Q Consensus 648 -~~-~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~I 725 (755)
.. ..+..... .+..|++++.+|.|++||..+++.+....+ ....+.......++ .|++++.+|.|
T Consensus 305 ~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~---------~~~~~~~~~~~~~~--~l~v~~~~G~l 371 (376)
T 3q7m_A 305 DLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV---------DSSGFQTEPVAADG--KLLIQAKDGTV 371 (376)
T ss_dssp TTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC---------CTTCBCSCCEEETT--EEEEEBTTSCE
T ss_pred ccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec---------CCCcceeCCEEECC--EEEEEeCCCEE
Confidence 21 22222333 256899999999999999999988765432 11112111111233 68899999999
Q ss_pred EEEE
Q 004404 726 RVVD 729 (755)
Q Consensus 726 rVWD 729 (755)
..||
T Consensus 372 ~~~~ 375 (376)
T 3q7m_A 372 YSIT 375 (376)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.50 E-value=1.6e-06 Score=93.13 Aligned_cols=203 Identities=7% Similarity=0.030 Sum_probs=124.8
Q ss_pred cccCCEEEEEEcCCCCEEEEEEC-----CCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 454 AHNGSIWSIKFSLDGRYLASAGE-----DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 454 gH~~~I~sI~fSpdg~~LaTgs~-----DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
+|-..+..|+|+++|+++++-.. +..|.+||+.+++....+......
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~---------------------------- 115 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI---------------------------- 115 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT----------------------------
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh----------------------------
Confidence 56778999999999986665433 578999999877644433110000
Q ss_pred eecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEE-EEEe---CCCcEEEEECCCCcEEEE
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL-LSSS---MDKTVRLWHLSSKTCLKI 603 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~L-aSgs---~DgtVrLWDl~t~~~~~~ 603 (755)
..+...+..+++.++ +.+ ++-. .++.|.+||+.+++..+.
T Consensus 116 -----------------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 116 -----------------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp -----------------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred -----------------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 001122455666653 443 3333 456777777766655554
Q ss_pred ee-c-----------------------------CCceEEEEEeeCCCcEEEEEECCC-cEEEEECC---CCcE-------
Q 004404 604 FS-H-----------------------------SDYVTCIQFNPVDDRYFISGSLDA-KVRIWSIP---ERQV------- 642 (755)
Q Consensus 604 ~~-h-----------------------------~~~VtsVafsP~dg~~LaSgS~Dg-tVrIWDl~---t~~~------- 642 (755)
+. | ...++.|+|+| +++.|+.+..++ .|..++.. .+..
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS 239 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence 42 1 02368899999 898888887776 44444421 1110
Q ss_pred -EEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 643 -VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 643 -v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
+...........++++++|.++++...++.|.+||..+++...... ..+...+++++|.+++. ++++.+.
T Consensus 240 ~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~--------~~~~~~p~~va~~~~g~-l~v~~~~ 310 (343)
T 2qe8_A 240 KIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT--------DEKLSWTDSFNFGSDGY-LYFDCNQ 310 (343)
T ss_dssp TCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE--------CGGGSCEEEEEECTTSC-EEEEECC
T ss_pred ceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE--------CCceecCCeeEECCCCc-EEEEeCc
Confidence 1111223356679999999988888889999999996665432211 01345689999999886 5666665
Q ss_pred CCcEEEEE
Q 004404 722 DSRIRVVD 729 (755)
Q Consensus 722 Dg~IrVWD 729 (755)
.+.+.+|.
T Consensus 311 ~~~~~~f~ 318 (343)
T 2qe8_A 311 LHHSAPLN 318 (343)
T ss_dssp GGGSGGGB
T ss_pred cccccccc
Confidence 55555454
No 233
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.44 E-value=3.6e-06 Score=93.59 Aligned_cols=228 Identities=9% Similarity=-0.009 Sum_probs=140.4
Q ss_pred CCcEEEEeeCCCCcccceeeeeEee--c---ccCCEEEEEEcCCCCEEEEEEC--CCcEEEEeCcCCceeeeeecccccC
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQ--A---HNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~--g---H~~~I~sI~fSpdg~~LaTgs~--DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
.++.|.++|..+.+...... +. . +......+.|+|||++|+.+.. ++.|.+.|+.+.+.+.++.......
T Consensus 147 ~~~~VsviD~~t~~vv~~I~---v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~ 223 (426)
T 3c75_H 147 RTDYVEVFDPVTFLPIADIE---LPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYH 223 (426)
T ss_dssp EEEEEEEECTTTCCEEEEEE---ETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred CCCEEEEEECCCCcEEEEEE---CCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCcee
Confidence 56789999998766543322 11 0 1123457899999999999874 5789999999998887764211000
Q ss_pred --ccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-
Q 004404 502 --HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (755)
Q Consensus 502 --~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd- 578 (755)
.......+..++++.++......+.+..... .++.....++ ...+.+.++
T Consensus 224 ~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~------------------~~~~v~~~p~---------~~~~~~~~dg 276 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSLARVDFADGETKVTNT------------------EVFHTEDELL---------INHPAFSLRS 276 (426)
T ss_dssp EEEEETTEEEEEETTSSEEEEECCTTCCEEEEC------------------CCCSCTTSCB---------CSCCEECTTT
T ss_pred eccCCCcEEEEEcCCCCEEEEECCCCcEEEEee------------------eeeccCCCce---------eeEeeecCCC
Confidence 0000112334455555444332222110000 0011111110 012355666
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEE--Eee-----------cCCceEEEEEeeCCCcEEEEEEC----------CCcEEEE
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLK--IFS-----------HSDYVTCIQFNPVDDRYFISGSL----------DAKVRIW 635 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~--~~~-----------h~~~VtsVafsP~dg~~LaSgS~----------DgtVrIW 635 (755)
+.++.....+.|.+.|+....... .+. .......++++| +++++++... .++|.++
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s~~VsVI 355 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAASRFVVVL 355 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccccccCCCCEEEEE
Confidence 556666678899999986554221 111 011222368999 7776666532 3579999
Q ss_pred ECCCCcEEEeccCCCCEEEEEEccCCC-EEEEEE-CCCcEEEEECCCCeeeecc
Q 004404 636 SIPERQVVDWNDLHEMVTAACYTPDGQ-GALVGS-YKGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 636 Dl~t~~~v~~~~~~~~VtsvafSPdG~-~LasGs-~DG~I~lwDl~~~~~~~~~ 687 (755)
|+.+.+++..+........++|+|||+ ++++.. .++.|.++|+.+++.+..+
T Consensus 356 D~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 356 NAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999999998777767799999999999 888888 5899999999999988764
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.42 E-value=5.6e-08 Score=106.14 Aligned_cols=187 Identities=12% Similarity=0.060 Sum_probs=96.6
Q ss_pred CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcc
Q 004404 467 DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM 546 (755)
Q Consensus 467 dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~ 546 (755)
++..|++++.||.|+.||..+++...++.. ..+.......++.+++.+..++.+......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~------------- 67 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK------------- 67 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-------CCSCCCC-----CCEEECTTTCCEEEC----------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-------CCceecceEcCCCEEEEeCCCCEEEEEECC-------------
Confidence 577899999999999999999998777632 111222223344444444444444222110
Q ss_pred cccceeeecCCCceEEeccCCCC-EE-EEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEE
Q 004404 547 VVPETVFALSDKPICSFQGHLDD-VL-DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI 624 (755)
Q Consensus 547 ~~~~~v~~~s~k~i~~l~gH~~~-V~-~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~La 624 (755)
+++.+..+..+... +. ...+..++.+++++.|+.|+.||..+|+.+..+.... .+.++| ++..++
T Consensus 68 ---------tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p-~~~~v~ 134 (369)
T 2hz6_A 68 ---------NNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSP-STSLLY 134 (369)
T ss_dssp -----------CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------EE
T ss_pred ---------CCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccc-cCCEEE
Confidence 22222222211100 00 0011124678888899999999999999988776333 245677 788899
Q ss_pred EEECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCC---CEEEEEECCCcEEEEECCCCeeeecc
Q 004404 625 SGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG---QGALVGSYKGSCHLYNTSENKLQQKS 687 (755)
Q Consensus 625 SgS~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG---~~LasGs~DG~I~lwDl~~~~~~~~~ 687 (755)
+++.|+.|+.||..+++.+...... .....++.++. ..+++++.+|.|+.||..+++.+...
T Consensus 135 ~~~~dg~v~a~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 135 LGRTEYTITMYDTKTRELRWNATYF-DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EEEEEEEEECCCSSSSSCCCEEEEE-EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred EEecCCEEEEEECCCCCEEEeEecc-cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 9999999999999998765222111 11223333332 56778899999999999999887654
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.42 E-value=3.2e-05 Score=85.78 Aligned_cols=231 Identities=14% Similarity=0.140 Sum_probs=141.1
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEee------cc-cCCEEEEEEcCCCCEEEEEECC------CcEEEEe
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ------AH-NGSIWSIKFSLDGRYLASAGED------CVIHVWQ 484 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~------gH-~~~I~sI~fSpdg~~LaTgs~D------GtVrVWd 484 (755)
.+...+.+.+..+.+|.++|..+.... ....++++ .+ ...-..+...|+| +++++..+ +.|.+.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~-p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE-PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS-CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC-ceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 344556778889999999998644221 22223331 11 1245667889999 77777666 7899999
Q ss_pred CcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEec
Q 004404 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564 (755)
Q Consensus 485 l~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~ 564 (755)
..+.+.+..+.... ..
T Consensus 171 ~~T~~v~~~~~~~~---~~------------------------------------------------------------- 186 (462)
T 2ece_A 171 HYSFEPLGKWEIDR---GD------------------------------------------------------------- 186 (462)
T ss_dssp TTTCCEEEECCSBC---TT-------------------------------------------------------------
T ss_pred CCCCeEEEEEccCC---CC-------------------------------------------------------------
Confidence 88887666652100 00
Q ss_pred cCCCCEEEEEecCC-cEEEEE-------------------eCCCcEEEEECCCCcEEEEeecC---CceEEEEE--eeCC
Q 004404 565 GHLDDVLDLSWSKS-QHLLSS-------------------SMDKTVRLWHLSSKTCLKIFSHS---DYVTCIQF--NPVD 619 (755)
Q Consensus 565 gH~~~V~~L~~spd-~~LaSg-------------------s~DgtVrLWDl~t~~~~~~~~h~---~~VtsVaf--sP~d 619 (755)
..--+++.|+|+ +.+++. -.+.+|.+||+.+++.++++.-. .....|.| +| +
T Consensus 187 --~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-d 263 (462)
T 2ece_A 187 --QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-T 263 (462)
T ss_dssp --CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-T
T ss_pred --ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-C
Confidence 000123445555 333333 23689999999999888888743 23455656 99 8
Q ss_pred CcEEEEEE------CCCcEEEEECCCCcEE--Ee---cc------C----------CCCEEEEEEccCCCEEEEEEC-CC
Q 004404 620 DRYFISGS------LDAKVRIWSIPERQVV--DW---ND------L----------HEMVTAACYTPDGQGALVGSY-KG 671 (755)
Q Consensus 620 g~~LaSgS------~DgtVrIWDl~t~~~v--~~---~~------~----------~~~VtsvafSPdG~~LasGs~-DG 671 (755)
++++++++ .+++|.+|....++.. +. .. . ...+..+.++|||++|+++.. .+
T Consensus 264 g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d 343 (462)
T 2ece_A 264 KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG 343 (462)
T ss_dssp CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTT
T ss_pred CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCC
Confidence 88777666 5678887766544321 11 11 0 245788999999999999876 67
Q ss_pred cEEEEECCCC---eeeecccccccccc-ccCC------CCCeEEEEEccCCCeEEEEEE
Q 004404 672 SCHLYNTSEN---KLQQKSPINLQNKK-KRSH------QRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 672 ~I~lwDl~~~---~~~~~~~i~~~~~~-~~~h------~~~Vtsl~fsPdg~~~L~sgs 720 (755)
.|.+||+... +++..+.+ .... ...| .+.-..++++|+|+ +|+++.
T Consensus 344 ~VavfdV~d~~~~~lv~~I~t--GG~~~~~~~~~G~~~~ggPr~~~lSpDGk-~LyVaN 399 (462)
T 2ece_A 344 EVRQYDISNPFKPVLTGKVKL--GGIFHRADHPAGHKLTGAPQMLEISRDGR-RVYVTN 399 (462)
T ss_dssp EEEEEECSSTTSCEEEEEEEC--BTTTTCBCCTTSCCCCSCCCCEEECTTSS-EEEEEC
T ss_pred EEEEEEecCCCCcEEEEEEEe--CCeeccccccccccCCCCCCEEEEcCCCC-EEEEEc
Confidence 8999998633 33332221 1000 0001 12357789999998 666665
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.41 E-value=2.5e-05 Score=86.63 Aligned_cols=159 Identities=11% Similarity=0.097 Sum_probs=110.0
Q ss_pred EEEEecCCcEEEEEeCC------CcEEEEECCCCcEEEEeec---C-CceEEEEEeeCCCcEEEEEE-------------
Q 004404 571 LDLSWSKSQHLLSSSMD------KTVRLWHLSSKTCLKIFSH---S-DYVTCIQFNPVDDRYFISGS------------- 627 (755)
Q Consensus 571 ~~L~~spd~~LaSgs~D------gtVrLWDl~t~~~~~~~~h---~-~~VtsVafsP~dg~~LaSgS------------- 627 (755)
..+...|++.++++..+ +.|.++|..+.+.+.++.. . ..-..+-|+| +++.+++..
T Consensus 141 h~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 141 HTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred cceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence 34556677755555554 7899999999999999862 1 2344688899 889888875
Q ss_pred ------CCCcEEEEECCCCcEEEeccCC---CCEEEEEE--ccCCCEEEEEE------CCCcEEEEECCCCeeeeccccc
Q 004404 628 ------LDAKVRIWSIPERQVVDWNDLH---EMVTAACY--TPDGQGALVGS------YKGSCHLYNTSENKLQQKSPIN 690 (755)
Q Consensus 628 ------~DgtVrIWDl~t~~~v~~~~~~---~~Vtsvaf--SPdG~~LasGs------~DG~I~lwDl~~~~~~~~~~i~ 690 (755)
...+|.+||+.+++++..+... .....+.| +|+++++++++ .+++|.+|....+.......+.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 3689999999998887766654 34555655 99999999877 4668888777665543332222
Q ss_pred cccccccC-----------CCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 691 LQNKKKRS-----------HQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 691 ~~~~~~~~-----------h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+...+... -...+..|.++|+|+.++++.-..+.|.+||.
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEEC
T ss_pred CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 22211111 12457889999999954555555789999994
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.41 E-value=1e-05 Score=84.86 Aligned_cols=251 Identities=12% Similarity=0.036 Sum_probs=144.2
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccccc
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~ 500 (755)
...++.+..+ |..++. +++....+. .+...+....+. +..|+.++.++.|..+|.. ++........
T Consensus 70 ~g~l~v~t~~--l~~~d~-~g~~~~~~~-----~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~--- 135 (330)
T 3hxj_A 70 DGTIYFGSDK--VYAINP-DGTEKWRFD-----TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK--- 135 (330)
T ss_dssp TTEECCSSCE--EEEECC-CGGGGGGSC-----C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS---
T ss_pred CCcEEEecCc--EEEECC-CCcEEEEEE-----CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC---
Confidence 3445666666 777876 333222111 111122223333 4567778889999999987 5544433211
Q ss_pred CccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcE
Q 004404 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH 580 (755)
Q Consensus 501 ~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~ 580 (755)
...+..+...+++.+++... ++.+ ..++..++.+..+......+.++...+++.
T Consensus 136 --~~~~~~~~~~~~g~l~vgt~-~~~l-----------------------~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~ 189 (330)
T 3hxj_A 136 --KAIYATPIVSEDGTIYVGSN-DNYL-----------------------YAINPDGTEKWRFKTNDAITSAASIGKDGT 189 (330)
T ss_dssp --SCCCSCCEECTTSCEEEECT-TSEE-----------------------EEECTTSCEEEEEECSSCCCSCCEECTTCC
T ss_pred --CceeeeeEEcCCCEEEEEcC-CCEE-----------------------EEECCCCCEeEEEecCCCceeeeEEcCCCE
Confidence 11112222333444443321 1211 111222233333333444566677767777
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE-EeccCCCCEEEEEEc
Q 004404 581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYT 658 (755)
Q Consensus 581 LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v-~~~~~~~~VtsvafS 658 (755)
|+.++ +.|..|| .+++.+..+. ....+.++.+.+ ++ .|..++.++.|..+|. ++..+ ........+..+.+.
T Consensus 190 l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~ 263 (330)
T 3hxj_A 190 IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIG 263 (330)
T ss_dssp EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEEC
T ss_pred EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEc
Confidence 77777 8899999 7777666665 456688888876 55 4666777888998885 44444 333333334455666
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEEC
Q 004404 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 659 PdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~ 730 (755)
+++ .|++++.+|.|..+|. +++...... .....+.++...+++. |.+++.+|.+++...
T Consensus 264 ~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~---------~~~~~~~~~~~d~~g~--l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 264 NTD-TIYFGSYDGHLYAINP-DGTEKWNFE---------TGSWIIATPVIDENGT--IYFGTRNGKFYALFN 322 (330)
T ss_dssp TTS-CEEEECTTCEEEEECT-TSCEEEEEE---------CSSCCCSCCEECTTCC--EEEECTTSCEEEEEC
T ss_pred CCC-eEEEecCCCCEEEECC-CCcEEEEEE---------cCCccccceEEcCCCE--EEEEcCCCeEEEEec
Confidence 555 6778888989999996 566554332 1234566667777774 788999999998873
No 238
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.34 E-value=0.0012 Score=79.05 Aligned_cols=270 Identities=10% Similarity=0.070 Sum_probs=169.4
Q ss_pred CcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecc--c
Q 004404 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK--Q 498 (755)
Q Consensus 421 ~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~--~ 498 (755)
...+|.+..++.|..|+...+++..... ..+...|.+|...+++.+.+ |+.++-|.+|+..+.+...-.... .
T Consensus 183 ~g~lwigt~~~Gl~~~~~~~~~~~~~~~----~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~ 257 (795)
T 4a2l_A 183 GDQIYIGTSTDGLYTYSITQKTFEKVIP----ILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNP 257 (795)
T ss_dssp TTEEEEEESSSCEEEEETTTCCEEECC--------CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCT
T ss_pred CCCEEEEECCCCEEEEeCCCCeEEEecC----CCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCc
Confidence 3456667766557888877665432211 12456799999888876554 444444888998765432211110 0
Q ss_pred ccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEec--------cCCCCE
Q 004404 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--------GHLDDV 570 (755)
Q Consensus 499 ~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~--------gH~~~V 570 (755)
.......+..+...+++.+.+.... +...... .......+. -....|
T Consensus 258 ~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~------------------------~~~~~~~~~~~~~~~~~l~~~~i 312 (795)
T 4a2l_A 258 KSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHE------------------------GTDSFASYSSNPVENGSLSQRSV 312 (795)
T ss_dssp TSCSCSBEEEEEECTTSCEEEEESS-CEEEEET------------------------TTTEEEEECCCTTSTTSCSSSCE
T ss_pred cccCCCeEEEEEEcCCCCEEEEeCC-hhheEcC------------------------CCCeEEEEecCCCCCCCCCCCcE
Confidence 1112355677777777776655432 3221111 111111111 123569
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-------cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE
Q 004404 571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (755)
Q Consensus 571 ~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-------h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v 643 (755)
.+|...+++.|..|+.++-|..|+..+........ ....|.++...+ ++. |..|+.++-|..|+..+++..
T Consensus 313 ~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~~~ 390 (795)
T 4a2l_A 313 RSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQRFT 390 (795)
T ss_dssp EEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTTCCEE
T ss_pred EEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCcEE
Confidence 99999999999999998899999876554332211 245699999887 555 556888888999999887765
Q ss_pred Eecc---------CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCe
Q 004404 644 DWND---------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (755)
Q Consensus 644 ~~~~---------~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~ 714 (755)
.... ....|.+++..++|+.|.+|+.++.|.+||..+++....... ....+...|.++...++|.
T Consensus 391 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~-----~~~l~~~~v~~i~~d~~g~- 464 (795)
T 4a2l_A 391 SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR-----NSQLVNENVYAILPDGEGN- 464 (795)
T ss_dssp EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT-----TSCCSCSCEEEEEECSSSC-
T ss_pred EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC-----CCCcCCCeeEEEEECCCCC-
Confidence 4431 135799999999998788899888899999988765432110 0012346799999888875
Q ss_pred EEEEEECCCcEEEEEC
Q 004404 715 EVLVTSADSRIRVVDG 730 (755)
Q Consensus 715 ~L~sgs~Dg~IrVWD~ 730 (755)
|.+|+. +.|.+||.
T Consensus 465 -lwigt~-~Gl~~~~~ 478 (795)
T 4a2l_A 465 -LWLGTL-SALVRFNP 478 (795)
T ss_dssp -EEEEES-SCEEEEET
T ss_pred -EEEEec-CceeEEeC
Confidence 555666 56888984
No 239
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.30 E-value=5.4e-05 Score=78.24 Aligned_cols=187 Identities=7% Similarity=0.017 Sum_probs=127.0
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccccccc
Q 004404 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (755)
Q Consensus 458 ~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~ 537 (755)
-...|.|+ ++.++++.+.+|.|+++|+.+++...++ ... ..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-----------------~~-------------------- 96 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-----------------NI-------------------- 96 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-----------------TC--------------------
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-----------------Cc--------------------
Confidence 35788887 4677788888899999999988765543 100 00
Q ss_pred ccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEee
Q 004404 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNP 617 (755)
Q Consensus 538 ~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP 617 (755)
.--.+++..+..++..-.++.+.+||..+.+.+.++.....-..++ +
T Consensus 97 -------------------------------FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~ 143 (268)
T 3nok_A 97 -------------------------------FAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--Y 143 (268)
T ss_dssp -------------------------------CEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--E
T ss_pred -------------------------------ceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--c
Confidence 0011233333344444568999999999999999998544444555 4
Q ss_pred CCCcEEEEEECCCcEEEEECCCCcEEEeccCC------CCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeeccccc
Q 004404 618 VDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPIN 690 (755)
Q Consensus 618 ~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~------~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~ 690 (755)
+++.|+.+..+++|.++|..+.+++..+... ..++.+.|. +|+ |++.. .+..|.+.|..+++.+..+.+.
T Consensus 144 -Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 144 -WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp -ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred -CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 6677777777999999999998887554332 256777877 675 55555 5789999999999998877654
Q ss_pred ccccc----ccCCCCCeEEEEEccCCCeEEEEE
Q 004404 691 LQNKK----KRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 691 ~~~~~----~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
..... ........++|+|.|+++.++++|
T Consensus 221 ~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 221 ALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp HHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 11100 112335689999999988555555
No 240
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.29 E-value=0.00019 Score=73.33 Aligned_cols=136 Identities=10% Similarity=0.019 Sum_probs=93.8
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC------CCEE
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMVT 653 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~------~~Vt 653 (755)
.+...-.++.+.+||..+.+.+.++.....-..++ + ++..|+.+..+++|.++|..+.+.+...... ..++
T Consensus 77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 77 LIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence 33444567899999999999999998554444555 4 5666666667899999999998877544332 3566
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccc----cCCCCCeEEEEEccCCCeEEEEE
Q 004404 654 AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK----RSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 654 svafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~----~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
.+.|. +|+..+..-.+..|.+.|..+++.+..+.+....... .......++|+|.|+++.++++|
T Consensus 154 eLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 154 ELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 77766 6654444445789999999999998877644211111 11234679999999988545444
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.27 E-value=0.002 Score=77.06 Aligned_cols=283 Identities=9% Similarity=0.028 Sum_probs=171.0
Q ss_pred CCCcEEEEeCCCcEEEEeeCCCCcccceeeee--EeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeec
Q 004404 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQ--EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 419 ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q--~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
+....+|.|+...-+..|+..++++....... .-.-....|.+|...++|.+.+ |+.+ -|.+|+..+.+.......
T Consensus 223 d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~ 300 (795)
T 4a2l_A 223 QSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSN 300 (795)
T ss_dssp EETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCC
T ss_pred cCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecC
Confidence 44455677775555788887765443221100 0001246799999998887544 4455 588899766543221111
Q ss_pred c--cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEE
Q 004404 497 K--QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (755)
Q Consensus 497 ~--~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~ 574 (755)
. ...-....+..+...+++.+.+.....+............ .+..... .. .-....|.++.
T Consensus 301 ~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~--------------~~~~~~~-~~--~l~~~~V~~i~ 363 (795)
T 4a2l_A 301 PVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK--------------NIRNIPY-KN--SLSDNVVSCIV 363 (795)
T ss_dssp TTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE--------------EECCCTT-SS--SCSCSSEEEEE
T ss_pred CCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce--------------EEcCCCC-CC--CCCCCeeEEEE
Confidence 0 1112335577777777777666554344332211111000 0000000 00 01234699999
Q ss_pred ecCCcEEEEEeCCCcEEEEECCCCcEEEEee---------cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe
Q 004404 575 WSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS---------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (755)
Q Consensus 575 ~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~---------h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~ 645 (755)
..+++.|..|+.++-|..|+..+++...... ....|.++...+ ++.+|..|+.++-|.+||..+++....
T Consensus 364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 9888889999999889999988776554331 135799999887 777577788888899999998877655
Q ss_pred cc-----CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 646 ND-----LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 646 ~~-----~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
.. ....|.++...++|. |.+|+. +.+.+||..+++....... .....-+...|.++...++|. |.+|+
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~i~~d~~g~--lWigt 515 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKE---KDGTPVVSKQITTLFRDSHKR--LWIGG 515 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBC---TTCCBCCCCCEEEEEECTTCC--EEEEE
T ss_pred ecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEcccc---ccccccCCceEEEEEECCCCC--EEEEe
Confidence 42 235799999988886 455555 5688999988765432110 000012346799999988886 55555
Q ss_pred CCCcEEEEE
Q 004404 721 ADSRIRVVD 729 (755)
Q Consensus 721 ~Dg~IrVWD 729 (755)
. +-|.+||
T Consensus 516 ~-~Gl~~~~ 523 (795)
T 4a2l_A 516 E-EGLSVFK 523 (795)
T ss_dssp S-SCEEEEE
T ss_pred C-CceEEEe
Confidence 5 5688888
No 242
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.22 E-value=2.6e-05 Score=85.12 Aligned_cols=226 Identities=8% Similarity=-0.090 Sum_probs=128.1
Q ss_pred CCCcEEEEeeCCCCcccceeeeeEeec-c----cCCEEEEEEcCCCCEEEEEEC--CCcEEE--EeCcCCceeeeeeccc
Q 004404 428 QERVRVRQYGKSCKDLTALYKCQEIQA-H----NGSIWSIKFSLDGRYLASAGE--DCVIHV--WQVVESERKGELLEKQ 498 (755)
Q Consensus 428 ~~dg~Vriwd~~~~~~~~~~~~q~l~g-H----~~~I~sI~fSpdg~~LaTgs~--DGtVrV--Wdl~t~~~~~~l~~~~ 498 (755)
..++.|.+||..+.+...... +.+ . ......++|+|||++|+.+.. +..|.+ +|+.+ ..++....
T Consensus 93 ~~~~~VsviD~~T~~vv~~I~---v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~ 166 (368)
T 1mda_H 93 KRTDYVEVFDPVTFLPIADIE---LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS 166 (368)
T ss_dssp SEEEEEEEECTTTCCEEEEEE---ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS
T ss_pred CCCCEEEEEECCCCCEEEEEE---CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC
Confidence 357889999998776543332 110 0 123457999999999998875 467888 99877 33332100
Q ss_pred ccCcc---ccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEe
Q 004404 499 EDGHL---NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (755)
Q Consensus 499 ~~~~~---~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~ 575 (755)
..+. .....+..++++.++.......... +... ++..+ . .+.-...+. .+
T Consensus 167 -~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~---------------~~~v----~~~~t-~---~i~vg~~P~---~~ 219 (368)
T 1mda_H 167 -CFHIHPGAAATHYLGSCPASLAASDLAAAPAA---------------AGIV----GAQCT-G---AQNCSSQAA---QA 219 (368)
T ss_dssp -CCCCEEEETTEEECCCCTTSCEEEECCSSCCC---------------CEEC----CCCSC-T---TSCBCSCCE---EE
T ss_pred -ceEEccCCCeEEEEEcCCCCEEEEECcccccc---------------CCeE----EEEee-e---eeeCCCCcc---cc
Confidence 0000 0001122333333322211110000 0000 00000 0 001111222 23
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCc--EEEEeec-----------CCceEEEEEeeCCCcEEEEEEC---------CCcEE
Q 004404 576 SKSQHLLSSSMDKTVRLWHLSSKT--CLKIFSH-----------SDYVTCIQFNPVDDRYFISGSL---------DAKVR 633 (755)
Q Consensus 576 spd~~LaSgs~DgtVrLWDl~t~~--~~~~~~h-----------~~~VtsVafsP~dg~~LaSgS~---------DgtVr 633 (755)
...+.++..+. +.|.+.|+.... .+..+.. ......++|+| +++.++.+.. ++.+.
T Consensus 220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEE
T ss_pred ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCcccccCCCEE
Confidence 33466666666 899999986532 3332211 11122268999 8777776543 23567
Q ss_pred EEECCCCcEEEeccCCCCEEEEEEccCCCE-EEEEE-CCCcEEEEECCCCeeeeccc
Q 004404 634 IWSIPERQVVDWNDLHEMVTAACYTPDGQG-ALVGS-YKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 634 IWDl~t~~~v~~~~~~~~VtsvafSPdG~~-LasGs-~DG~I~lwDl~~~~~~~~~~ 688 (755)
++|+.+++.+..+........++|+|||++ +++.. .++.|.++|+.+++.+..+.
T Consensus 298 ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 298 SVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 999999999887776678999999999985 55555 58999999999999887654
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.22 E-value=0.00016 Score=76.36 Aligned_cols=238 Identities=7% Similarity=-0.013 Sum_probs=137.2
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccc-------c--------CccccEEEeecCC-CCceecc
Q 004404 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE-------D--------GHLNMLLLANGSP-EPTSLSP 520 (755)
Q Consensus 457 ~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~-------~--------~~~~~v~~v~~s~-dg~~l~~ 520 (755)
....+++|.++|++|+++..++.|..|+..+++.. .+..... . ........+.+.+ ++.++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 34567889999997888888999999988654322 2210000 0 0012234556665 5655555
Q ss_pred ccCCCceeeecccccccccccccCcccccceeeecCCCceEEe----cc-CCCCEEEEEecC-CcEEEEEeC--------
Q 004404 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF----QG-HLDDVLDLSWSK-SQHLLSSSM-------- 586 (755)
Q Consensus 521 ~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l----~g-H~~~V~~L~~sp-d~~LaSgs~-------- 586 (755)
....+ +... +.....+..+ .+ ......++++.+ ++.|+.+..
T Consensus 98 d~~~~-i~~~-----------------------d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~ 153 (322)
T 2fp8_A 98 DCYYH-LSVV-----------------------GSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG 153 (322)
T ss_dssp ETTTE-EEEE-----------------------CTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred ECCCC-EEEE-----------------------eCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence 33222 1111 1111111111 11 113478899999 876665543
Q ss_pred ----------CCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEE-ECCCcEEEEECCCC---cEEEeccCCCCE
Q 004404 587 ----------DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG-SLDAKVRIWSIPER---QVVDWNDLHEMV 652 (755)
Q Consensus 587 ----------DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSg-S~DgtVrIWDl~t~---~~v~~~~~~~~V 652 (755)
++.|..||..+++.......-...+.|+|+| ++++|+.+ ...+.|.+|++... ....+..... .
T Consensus 154 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P 231 (322)
T 2fp8_A 154 VQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-P 231 (322)
T ss_dssp HHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-E
T ss_pred cceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-C
Confidence 3678889987776544433334557899999 88866555 55689999998752 2222222334 8
Q ss_pred EEEEEccCCCEEEEEEC----------CCcEEEEECCCCeeeeccccccccccccCC-CCCeEEEEEccCCCeEEEEEEC
Q 004404 653 TAACYTPDGQGALVGSY----------KGSCHLYNTSENKLQQKSPINLQNKKKRSH-QRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 653 tsvafSPdG~~LasGs~----------DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h-~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
..+++.++|++.++... .+.|..+|.. ++....+... .+. ...++.+++ .++. ++++...
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~------~g~~~~~~~~~~~-~~g~-L~v~~~~ 302 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP------PPFAGEHFEQIQE-HDGL-LYIGTLF 302 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC------TTTTTSCCCEEEE-ETTE-EEEECSS
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC------CCCccccceEEEE-eCCE-EEEeecC
Confidence 88999999986666443 4678888875 5555443211 011 244666666 3443 4454456
Q ss_pred CCcEEEEEC
Q 004404 722 DSRIRVVDG 730 (755)
Q Consensus 722 Dg~IrVWD~ 730 (755)
.+.|.+++.
T Consensus 303 ~~~i~~~~~ 311 (322)
T 2fp8_A 303 HGSVGILVY 311 (322)
T ss_dssp CSEEEEEEC
T ss_pred CCceEEEec
Confidence 788888884
No 244
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.19 E-value=9.5e-07 Score=96.31 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=110.8
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccC
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~ 501 (755)
..++.++.++.|+.||..+++..-.+. . +.+.+..+..++..+++++.||.|+.||..+++.+..+....
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~-----~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~--- 79 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLK-----E--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI--- 79 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEE-----C--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH---
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEec-----C--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC---
Confidence 456788889999999998887543332 2 455555566788888888899999999998887655442110
Q ss_pred ccccEEE-eecCCCCceeccccCCCceeeecccccccccccccCcccccceeee-cCCCceEEeccCCCCEEEEEecCC-
Q 004404 502 HLNMLLL-ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA-LSDKPICSFQGHLDDVLDLSWSKS- 578 (755)
Q Consensus 502 ~~~~v~~-v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~-~s~k~i~~l~gH~~~V~~L~~spd- 578 (755)
...+.. .....++ .++.+..++.+. .++ .+++.+..+..+.. ..++|+
T Consensus 80 -~~~~~~sp~~~~~~-~v~~g~~dg~v~-----------------------a~D~~tG~~~w~~~~~~~----~~~~p~~ 130 (369)
T 2hz6_A 80 -PELVQASPCRSSDG-ILYMGKKQDIWY-----------------------VIDLLTGEKQQTLSSAFA----DSLSPST 130 (369)
T ss_dssp -HHHHTTCSCC------CCCCEEEEEEE-----------------------EECCC------------------------
T ss_pred -ccccccCceEecCC-EEEEEeCCCEEE-----------------------EEECCCCcEEEEecCCCc----ccccccC
Confidence 000000 0000122 222332222221 111 13444444443321 233444
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCC---cEEEEEECCCcEEEEECCCCcEEEeccCCCCEEE-
Q 004404 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDD---RYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTA- 654 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg---~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~Vts- 654 (755)
+.+++++.|+.|+.||..+++.+..+.... .....+.+ +. ..+++++.||.|+.||..+++.+-......++..
T Consensus 131 ~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~ 208 (369)
T 2hz6_A 131 SLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAF 208 (369)
T ss_dssp --EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEE
T ss_pred CEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccC-CccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEE
Confidence 788899999999999999998766654211 12222332 21 5677789999999999999998755555555543
Q ss_pred EEEccCCCEE----EEEECCCcEEEEECCCCe
Q 004404 655 ACYTPDGQGA----LVGSYKGSCHLYNTSENK 682 (755)
Q Consensus 655 vafSPdG~~L----asGs~DG~I~lwDl~~~~ 682 (755)
.+++++|... +.+ ++.++.+|..+++
T Consensus 209 ~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 209 YVWQREGLRKVMHINVA--VETLRYLTFMSGE 238 (369)
T ss_dssp EECTTSSCEEECCEEEE--HHHHHHHHHHHHH
T ss_pred EEecCCceEeccceeec--ccceeeeehhcCC
Confidence 4455566432 122 4456667766665
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.18 E-value=0.00091 Score=68.41 Aligned_cols=170 Identities=6% Similarity=-0.038 Sum_probs=106.6
Q ss_pred CCEEEEEecCC-cEEEEE-eCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEEC---CCcEEEEECCCCc
Q 004404 568 DDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL---DAKVRIWSIPERQ 641 (755)
Q Consensus 568 ~~V~~L~~spd-~~LaSg-s~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~---DgtVrIWDl~t~~ 641 (755)
.....|++.++ +.|+.+ ...+.|.++++.......... .......++++| ++..|+.+.. .+.|..+++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 46789999985 565544 456899999987544333333 225678999999 6555555544 3688888876543
Q ss_pred EEEec-cCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 642 VVDWN-DLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 642 ~v~~~-~~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
...+. ..-.....++++|++..|+++. ..+.|.++++.......... ......+++.. +..++++.
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~----------~~~~P~gi~~d--~~~lyva~ 225 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE----------GLQYPFAVTSY--GKNLYYTD 225 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE----------CCCSEEEEEEE--TTEEEEEE
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec----------CCCCceEEEEe--CCEEEEEE
Confidence 32222 2235689999999887776655 45789999997644332211 12234566654 44344444
Q ss_pred ECCCcEEEEE--CCcceEEeecCCc-cEEEEEEE
Q 004404 720 SADSRIRVVD--GIDLVHKFKGENY-VQYMVCIV 750 (755)
Q Consensus 720 s~Dg~IrVWD--~~~ll~~~~GH~~-~V~sv~fs 750 (755)
...+.|.++| +++.+..+..... ..+.+++.
T Consensus 226 ~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~ 259 (267)
T 1npe_A 226 WKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA 259 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred CCCCeEEEEeCCCCCceEEEccccccccceeeec
Confidence 4568999999 4677888764432 34555543
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.18 E-value=0.00061 Score=80.11 Aligned_cols=158 Identities=9% Similarity=0.161 Sum_probs=107.6
Q ss_pred EEEecCC-cEEEEEeCCC-------------------cEEEEECCCCcEEEEee---cC-------CceEEEEEeeCCCc
Q 004404 572 DLSWSKS-QHLLSSSMDK-------------------TVRLWHLSSKTCLKIFS---HS-------DYVTCIQFNPVDDR 621 (755)
Q Consensus 572 ~L~~spd-~~LaSgs~Dg-------------------tVrLWDl~t~~~~~~~~---h~-------~~VtsVafsP~dg~ 621 (755)
.+++.|. +.++.+..++ .|.-+|..+++.+..+. |. .++....+.. +++
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~ 312 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGK 312 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCc
Confidence 4677775 7888887766 39999999999998886 22 2333334444 565
Q ss_pred ---EEEEEECCCcEEEEECCCCcEEEeccCCC-------------CE------------------------EEEEEccCC
Q 004404 622 ---YFISGSLDAKVRIWSIPERQVVDWNDLHE-------------MV------------------------TAACYTPDG 661 (755)
Q Consensus 622 ---~LaSgS~DgtVrIWDl~t~~~v~~~~~~~-------------~V------------------------tsvafSPdG 661 (755)
.++.++.+|.++++|..+++++....... ++ ..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 68899999999999999999872211110 00 126788877
Q ss_pred CEEEEEE------------------------------------CCCcEEEEECCCCeeeeccccccccccccCCCCCeEE
Q 004404 662 QGALVGS------------------------------------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (755)
Q Consensus 662 ~~LasGs------------------------------------~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (755)
..+++.. .+|.|+.||+.+++....... ...+..
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~----------~~~~~~ 462 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY----------PTHWNG 462 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE----------SSSCCC
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC----------CCCCcC
Confidence 7766522 237899999999998765432 112222
Q ss_pred EEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCC
Q 004404 706 FQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGEN 741 (755)
Q Consensus 706 l~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~ 741 (755)
..+...+. ++++++.|+.|++|| +++++.+++...
T Consensus 463 ~~~~t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 463 GTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp CEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ceeEeCCC-EEEEECCcccchhhhhhcChhheEecCCC
Confidence 23334454 788899999999999 588888887543
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.16 E-value=0.0001 Score=76.62 Aligned_cols=161 Identities=11% Similarity=0.050 Sum_probs=113.2
Q ss_pred CEEEEEecCCcEEEEEeC---CCcEEEEECCCCcEEEEeecCC--ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE
Q 004404 569 DVLDLSWSKSQHLLSSSM---DKTVRLWHLSSKTCLKIFSHSD--YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (755)
Q Consensus 569 ~V~~L~~spd~~LaSgs~---DgtVrLWDl~t~~~~~~~~h~~--~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v 643 (755)
....|.|++++.|+.++. ++.|+++|+.+++.+..+.... ....+++. ++.++++.-.++.|.++|..+.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 368999999777666653 5899999999999999886333 33455554 3345555556889999999999988
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC
Q 004404 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (755)
Q Consensus 644 ~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg 723 (755)
..+... .-....+++||+.|+++..++.|.++|..+.+....+.+... ...-..++.+.|. ++. .++....++
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~----~~p~~~~nele~~-dg~-lyvn~~~~~ 172 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN----GHRVIRLNELEYI-NGE-VWANIWQTD 172 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET----TEECCCEEEEEEE-TTE-EEEEETTSS
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC----CcccccceeEEEE-CCE-EEEecCCCC
Confidence 666443 112244667888888888889999999999888776553210 0112347788888 563 344444578
Q ss_pred cEEEEE--CCcceEEee
Q 004404 724 RIRVVD--GIDLVHKFK 738 (755)
Q Consensus 724 ~IrVWD--~~~ll~~~~ 738 (755)
.|.+.| +++.+..+.
T Consensus 173 ~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 173 CIARISAKDGTLLGWIL 189 (266)
T ss_dssp EEEEEETTTCCEEEEEE
T ss_pred eEEEEECCCCcEEEEEE
Confidence 999999 577888876
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.04 E-value=0.00018 Score=74.23 Aligned_cols=173 Identities=8% Similarity=0.017 Sum_probs=118.3
Q ss_pred EEEEEecCCcEEEEEeCCC--cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc
Q 004404 570 VLDLSWSKSQHLLSSSMDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647 (755)
Q Consensus 570 V~~L~~spd~~LaSgs~Dg--tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~ 647 (755)
...|.|+.+..+.+.+.+| .|+++|+.+++.+..+.-........+.+.++++++..-.++.+.+||..+.+++..+.
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 4788898444556666666 89999999999999887555554433344133444444458899999999999987666
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE-CCCcEE
Q 004404 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIR 726 (755)
Q Consensus 648 ~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs-~Dg~Ir 726 (755)
....- ..++++++.|+.+...+.|+++|..+.+....+.+.... ..-..++.+.|. +|. |.+.. .+..|.
T Consensus 125 ~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g----~~~~~lNELe~~-~G~--lyan~w~~~~I~ 195 (262)
T 3nol_A 125 YDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG----EELPELNELEWV-DGE--IFANVWQTNKIV 195 (262)
T ss_dssp CSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT----EECCCEEEEEEE-TTE--EEEEETTSSEEE
T ss_pred CCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC----ccccccceeEEE-CCE--EEEEEccCCeEE
Confidence 54422 344467888888777888999999999888776542100 111345677887 563 55554 578999
Q ss_pred EEE--CCcceEEeecC------------CccEEEEEEEE
Q 004404 727 VVD--GIDLVHKFKGE------------NYVQYMVCIVL 751 (755)
Q Consensus 727 VWD--~~~ll~~~~GH------------~~~V~sv~fs~ 751 (755)
+.| +++.+.++.-. .+..+++++.|
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK 234 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC
Confidence 999 57888777642 12468888864
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=0.01 Score=70.68 Aligned_cols=288 Identities=8% Similarity=-0.002 Sum_probs=163.1
Q ss_pred ecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeE--eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeee
Q 004404 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQE--IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (755)
Q Consensus 417 ~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~--l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l 494 (755)
..+....+|.|+.. -+..|+..++.+........ ..-....|.+|...++|. |..|+..+-|.+++..+.......
T Consensus 217 ~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~ 294 (781)
T 3v9f_A 217 YKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPE 294 (781)
T ss_dssp EECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC------
T ss_pred EEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeee
Confidence 34455556777766 68889887665543221100 011246799999988886 455666456888887665422111
Q ss_pred e-------cc--cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEecc
Q 004404 495 L-------EK--QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565 (755)
Q Consensus 495 ~-------~~--~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~g 565 (755)
. .. ......+.+..+....++.+.+.....+........... ..+...........-
T Consensus 295 ~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--------------~~~~~~~~~~~~~~l 360 (781)
T 3v9f_A 295 QIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTF--------------HTWSYSPTQMNESSL 360 (781)
T ss_dssp ---CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSC--------------EEEC----CCCSSCC
T ss_pred ccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcc--------------eeeccCccccccCCC
Confidence 0 00 011223456666666666655544333322111111000 000000000000001
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe---e-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc
Q 004404 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF---S-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (755)
Q Consensus 566 H~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~---~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~ 641 (755)
....|.++...+++.|..|+.++-|.+|+..++...... . ....|.++...+ ++. |..|+.++-|..++..+++
T Consensus 361 ~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 361 SNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLKK 438 (781)
T ss_dssp SSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSSCE
T ss_pred CCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCCCc
Confidence 234689999988888999998888999998754432211 1 346799998876 555 5557777789999988887
Q ss_pred EEEecc---CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 642 VVDWND---LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 642 ~v~~~~---~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
...... ....|.++...++|. |.+|+. +.|.+||..+++........ ........|.++...++|. |.+
T Consensus 439 ~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~----~~~~~~~~i~~i~~d~~g~--lWi 510 (781)
T 3v9f_A 439 FQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTS----NSQLLENFVRSIAQDSEGR--FWI 510 (781)
T ss_dssp EEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTT----TSSCSCSCEEEEEECTTCC--EEE
T ss_pred EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCc----ccccccceeEEEEEcCCCC--EEE
Confidence 655432 246799999988874 666666 66899998876554321100 0011246799999888885 666
Q ss_pred EECCCcEEEEEC
Q 004404 719 TSADSRIRVVDG 730 (755)
Q Consensus 719 gs~Dg~IrVWD~ 730 (755)
|+.++-|..||.
T Consensus 511 gt~~~Gl~~~~~ 522 (781)
T 3v9f_A 511 GTFGGGVGIYTP 522 (781)
T ss_dssp EESSSCEEEECT
T ss_pred EEcCCCEEEEeC
Confidence 776555777884
No 250
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.01 E-value=6.7e-05 Score=85.88 Aligned_cols=219 Identities=12% Similarity=0.104 Sum_probs=136.8
Q ss_pred CCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEE-c-CCCCEEEEEEC------------------CC
Q 004404 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF-S-LDGRYLASAGE------------------DC 478 (755)
Q Consensus 419 ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~f-S-pdg~~LaTgs~------------------DG 478 (755)
|+..+.+....+.+|.+.|+.+.+..... ++. ....+..+++ + |+++|++.++. ++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii---~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAIL---EIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEE---ECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEE---eCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 34444566677888999998866544322 232 2235888998 5 99999998853 45
Q ss_pred cEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCC
Q 004404 479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK 558 (755)
Q Consensus 479 tVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k 558 (755)
.|.+.|..+.+...++... + ....+..++++..+.+...+...... +...+.+
T Consensus 176 ~vtvID~~t~~v~~qI~Vg---g---~pd~~~~spdGk~~~vt~~~se~~~~---------------------i~~~~~~ 228 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVS---G---NLDNCDADYEGKWAFSTSYNSEKGMT---------------------LPEMTAA 228 (595)
T ss_dssp EEEEEETTTTEEEEEEEES---S---CCCCEEECSSSSEEEEEESCTTCCSS---------------------HHHHTCC
T ss_pred eEEEEECCCCeEEEEEEeC---C---CccceEECCCCCEEEEEecCcccCcc---------------------hhhcccc
Confidence 7899999888777766421 1 11234466777766665433211000 0000000
Q ss_pred ceEEeccCCCCEEEEE------ecCCcEEEEEeCCCcEEEEECCC--CcE-EEEeecCCceEEEEEeeCCCcEEEEEE-C
Q 004404 559 PICSFQGHLDDVLDLS------WSKSQHLLSSSMDKTVRLWHLSS--KTC-LKIFSHSDYVTCIQFNPVDDRYFISGS-L 628 (755)
Q Consensus 559 ~i~~l~gH~~~V~~L~------~spd~~LaSgs~DgtVrLWDl~t--~~~-~~~~~h~~~VtsVafsP~dg~~LaSgS-~ 628 (755)
... .|.-+. +.+++..... +.|.+.|..+ ++. +..+.-.....++.++| |+++++++. .
T Consensus 229 ~~d-------~v~V~~~~~~~~~v~~Gk~~~i---~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sP-DGk~v~V~~~~ 297 (595)
T 1fwx_A 229 EMD-------HIVVFNIAEIEKAIAAGDYQEL---NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAP-DKKHLCVAGKL 297 (595)
T ss_dssp SEE-------EEEEEEHHHHHHHHHHTCSEEE---TTEEEEECSGGGCCSSEEEEEEESSCCCEEECT-TSSEEEEECTT
T ss_pred ccc-------eEEEeeccceeEeccCCCeeEE---CcEEEEeCcccCCceeEEEEecCCCceEEEEcC-CCCEEEEeCCC
Confidence 000 011010 1122211111 5699999998 555 66666556778899999 888766654 6
Q ss_pred CCcEEEEECCCCc------------EEEeccCCCCEEEEEEccCCCEEEE-EECCCcEEEEECCC
Q 004404 629 DAKVRIWSIPERQ------------VVDWNDLHEMVTAACYTPDGQGALV-GSYKGSCHLYNTSE 680 (755)
Q Consensus 629 DgtVrIWDl~t~~------------~v~~~~~~~~VtsvafSPdG~~Las-Gs~DG~I~lwDl~~ 680 (755)
+.+|.++|+.+.+ ++...........++|+|+| ++++ .-.++.|.+||+..
T Consensus 298 s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 298 SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 7899999998653 45555666789999999999 5555 55689999999987
No 251
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=0.0035 Score=74.67 Aligned_cols=283 Identities=9% Similarity=-0.007 Sum_probs=166.7
Q ss_pred eeecCCCcEEEEeCCCcEEEEeeCCCCcccceee--ee---E----eecccCCEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 004404 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYK--CQ---E----IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV 485 (755)
Q Consensus 415 s~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~--~q---~----l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl 485 (755)
+...+....+|.|+..+-|.+++.....+..... .. . -.-....|.+|...++|. |..|+.++-|..|+.
T Consensus 262 ~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~ 340 (781)
T 3v9f_A 262 SIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISN 340 (781)
T ss_dssp EEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECS
T ss_pred EEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCC
Confidence 3345566678888886677888887665433221 00 0 012356799999998886 566776777888887
Q ss_pred cCCceeeeeecc----cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceE
Q 004404 486 VESERKGELLEK----QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC 561 (755)
Q Consensus 486 ~t~~~~~~l~~~----~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~ 561 (755)
.+.....-.... ........+..+...+++.+.+.....+............ .+ . .
T Consensus 341 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~--------------~~--~-~--- 400 (781)
T 3v9f_A 341 APPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAI--------------YN--K-E--- 400 (781)
T ss_dssp SCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEE--------------CC--------
T ss_pred CCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEE--------------Ec--c-C---
Confidence 654322111000 1111234566666666666655443333221111100000 00 0 0
Q ss_pred EeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECC
Q 004404 562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (755)
Q Consensus 562 ~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~ 638 (755)
........|.++...+++.|..|+.++-|..++..+++...... ....|.++...+ ++. |..|+. +-|.+||..
T Consensus 401 ~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~~~~ 477 (781)
T 3v9f_A 401 NRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVIDLA 477 (781)
T ss_dssp ---CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEEESS
T ss_pred CCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEEeCC
Confidence 00123456899998888888889988889999988776543321 346799998876 555 555665 568899988
Q ss_pred CCcEEEeccC------CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 639 ERQVVDWNDL------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 639 t~~~v~~~~~------~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
+++....... ...|.++...++|. |.+|+..+-|..||..+++...... ...-....|.++...++|
T Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~------~~~l~~~~i~~i~~d~~g 550 (781)
T 3v9f_A 478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQ------YEGFCSNTINQIYRSSKG 550 (781)
T ss_dssp SSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECT------TTTCSCSCEEEEEECTTS
T ss_pred CCeEEecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccC------CCCCCCCeeEEEEECCCC
Confidence 8765443322 35799999999886 5566665558889988765543211 001234678999988888
Q ss_pred CeEEEEEECCCcEEEEEC
Q 004404 713 SSEVLVTSADSRIRVVDG 730 (755)
Q Consensus 713 ~~~L~sgs~Dg~IrVWD~ 730 (755)
. |..++..|-|..||.
T Consensus 551 ~--lWi~T~~Glv~~~d~ 566 (781)
T 3v9f_A 551 Q--MWLATGEGLVCFPSA 566 (781)
T ss_dssp C--EEEEETTEEEEESCT
T ss_pred C--EEEEECCCceEEECC
Confidence 5 555666665588883
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.00 E-value=0.00012 Score=75.62 Aligned_cols=159 Identities=11% Similarity=0.042 Sum_probs=115.0
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCceEE--EEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec
Q 004404 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTC--IQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (755)
Q Consensus 569 ~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~Vts--VafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~ 646 (755)
-...|.|+.+..+.+.+.+|.|+++|+.+++.+..+ -...... +++. ++++++..-.++.+.+||..+.+++..+
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 357888887677788888999999999999888777 4444444 5553 3455555556899999999999998766
Q ss_pred cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE-CCCcE
Q 004404 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRI 725 (755)
Q Consensus 647 ~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs-~Dg~I 725 (755)
.....-..++ ++++.|+++..++.|+++|..+.+....+.+.... ..-..++.+.|. +|. |.++. .+..|
T Consensus 133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g----~~v~~lNeLe~~-dG~--lyanvw~s~~I 203 (268)
T 3nok_A 133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG----QPVELINELECA-NGV--IYANIWHSSDV 203 (268)
T ss_dssp ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETT----EECCCEEEEEEE-TTE--EEEEETTCSEE
T ss_pred eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC----cccccccccEEe-CCE--EEEEECCCCeE
Confidence 6544333444 67889999888999999999999988876542211 112356778887 553 44554 57899
Q ss_pred EEEE--CCcceEEeec
Q 004404 726 RVVD--GIDLVHKFKG 739 (755)
Q Consensus 726 rVWD--~~~ll~~~~G 739 (755)
.+.| +++.+.++.-
T Consensus 204 ~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 204 LEIDPATGTVVGVIDA 219 (268)
T ss_dssp EEECTTTCBEEEEEEC
T ss_pred EEEeCCCCcEEEEEEC
Confidence 9999 5778777763
No 253
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.96 E-value=0.00022 Score=81.57 Aligned_cols=153 Identities=7% Similarity=-0.025 Sum_probs=98.2
Q ss_pred CcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCC-------------------------------------
Q 004404 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA------------------------------------- 630 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~Dg------------------------------------- 630 (755)
+.|.+.|..+.+.+.++.-.+....++++| +++++++.+.+.
T Consensus 175 ~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 175 NVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred ceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 346667777777666665333455666777 677777666442
Q ss_pred -cEEEEECCC--CcE-EEeccCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeecccccccc--ccccCCCCCe
Q 004404 631 -KVRIWSIPE--RQV-VDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQN--KKKRSHQRKI 703 (755)
Q Consensus 631 -tVrIWDl~t--~~~-v~~~~~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~--~~~~~h~~~V 703 (755)
.|.|.|..+ ++. +..+........+.++|||+++++++ .+.+|.+||+.+.+....-.+.... .....-....
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 477777776 444 44554455677899999999888865 5788999999965311000000000 0001223567
Q ss_pred EEEEEccCCCeEEEEEECCCcEEEEEC------------CcceEEeecCCc
Q 004404 704 TGFQFAPGSSSEVLVTSADSRIRVVDG------------IDLVHKFKGENY 742 (755)
Q Consensus 704 tsl~fsPdg~~~L~sgs~Dg~IrVWD~------------~~ll~~~~GH~~ 742 (755)
..++|+|+| ..+++.--|++|.+||. .+.+.++.-|-.
T Consensus 334 ~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq 383 (595)
T 1fwx_A 334 LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ 383 (595)
T ss_dssp EEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred ceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc
Confidence 899999999 56777788999999992 456777776543
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.94 E-value=0.0013 Score=75.79 Aligned_cols=108 Identities=8% Similarity=0.002 Sum_probs=78.1
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCC--------------ce--------------------------EEEEEeeCC
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSD--------------YV--------------------------TCIQFNPVD 619 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~h~~--------------~V--------------------------tsVafsP~d 619 (755)
.++.++.+|.++++|..+++.+..+.... ++ ..++|+| +
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~ 396 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-E 396 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-T
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-C
Confidence 36778889999999999999887765211 11 2357888 6
Q ss_pred CcEEEEEE-------------------------------------CCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCC
Q 004404 620 DRYFISGS-------------------------------------LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQ 662 (755)
Q Consensus 620 g~~LaSgS-------------------------------------~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~ 662 (755)
..+|+... .++.|..||+.+++.+-.......+....+...+.
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg 476 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGG 476 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTT
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCC
Confidence 56666543 35789999999998875444444333333444566
Q ss_pred EEEEEECCCcEEEEECCCCeeeeccc
Q 004404 663 GALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 663 ~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
.+++++.||.|+.||..+++.+..+.
T Consensus 477 ~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 477 LVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 88889999999999999999987654
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.93 E-value=0.0023 Score=73.79 Aligned_cols=140 Identities=11% Similarity=0.074 Sum_probs=93.6
Q ss_pred cEEEEECCCCcEEEEee---cCC-------ceEEEEEeeCCC---cEEEEEECCCcEEEEECCCCcEEEeccCCC-----
Q 004404 589 TVRLWHLSSKTCLKIFS---HSD-------YVTCIQFNPVDD---RYFISGSLDAKVRIWSIPERQVVDWNDLHE----- 650 (755)
Q Consensus 589 tVrLWDl~t~~~~~~~~---h~~-------~VtsVafsP~dg---~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~----- 650 (755)
.|..+|..+++.+..+. |.. ...-+...+ ++ +.++.++.+|.+.++|..+++++.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 69999999999988875 211 111123334 56 367788999999999999998874332211
Q ss_pred ---------CE--------------------------EEEEEccCCCEEEEEE---------------------------
Q 004404 651 ---------MV--------------------------TAACYTPDGQGALVGS--------------------------- 668 (755)
Q Consensus 651 ---------~V--------------------------tsvafSPdG~~LasGs--------------------------- 668 (755)
++ ..++|+|+...|++..
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 11 2467888887887764
Q ss_pred ----------CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEE
Q 004404 669 ----------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHK 736 (755)
Q Consensus 669 ----------~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~ 736 (755)
.+|.|+.||+.+++.+...... ..+.+..+...+. ++++++.|+.|++|| +++++-+
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----------~~~~~~~~~t~gg-~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----------FAAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEES----------SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCC----------CCccceeEEECCC-EEEEEcCCCeEEEEECCCCCEEEE
Confidence 2478999999999887654321 1122222222344 688899999999999 6888888
Q ss_pred eecC
Q 004404 737 FKGE 740 (755)
Q Consensus 737 ~~GH 740 (755)
++..
T Consensus 501 ~~~~ 504 (571)
T 2ad6_A 501 FKMP 504 (571)
T ss_dssp EECS
T ss_pred EeCC
Confidence 8744
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.87 E-value=0.00082 Score=68.67 Aligned_cols=175 Identities=11% Similarity=-0.004 Sum_probs=120.9
Q ss_pred CCEEEEEecCCcEEEEEeCCC--cEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEe
Q 004404 568 DDVLDLSWSKSQHLLSSSMDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (755)
Q Consensus 568 ~~V~~L~~spd~~LaSgs~Dg--tVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~ 645 (755)
.-...|.|+++..+.+.+.+| .|+.+|+.+++.+..+.-..........+.++++++..-.++.+.+||..+.+++..
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 346789998865566666654 899999999999998875544444433442345555555689999999999999876
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE-CCCc
Q 004404 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSR 724 (755)
Q Consensus 646 ~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs-~Dg~ 724 (755)
+.....-..++ ++++.|+++..++.|+++|..+.+....+.+.... ..-..++.+.|. +| .|.+.. .+..
T Consensus 101 i~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g----~~~~~lNeLe~~-~G--~lyanvw~s~~ 171 (243)
T 3mbr_X 101 FRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG----RPLDNLNELEWV-NG--ELLANVWLTSR 171 (243)
T ss_dssp EECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT----EECCCEEEEEEE-TT--EEEEEETTTTE
T ss_pred EeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC----cccccceeeEEe-CC--EEEEEECCCCe
Confidence 66554334444 67888888888899999999999888776542110 111346677776 45 355554 5779
Q ss_pred EEEEE--CCcceEEeecC-------------CccEEEEEEEE
Q 004404 725 IRVVD--GIDLVHKFKGE-------------NYVQYMVCIVL 751 (755)
Q Consensus 725 IrVWD--~~~ll~~~~GH-------------~~~V~sv~fs~ 751 (755)
|.+.| +++.+..+.-. .+..+++++.+
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~ 213 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA 213 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC
Confidence 99999 57788777622 12467888764
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.82 E-value=0.0094 Score=62.33 Aligned_cols=169 Identities=13% Similarity=0.071 Sum_probs=98.7
Q ss_pred EEEEEecCCcEEEEEeC--CC-cEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc--E
Q 004404 570 VLDLSWSKSQHLLSSSM--DK-TVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--V 642 (755)
Q Consensus 570 V~~L~~spd~~LaSgs~--Dg-tVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~--~ 642 (755)
+..|++.+++.|+.+.. ++ .|..++..+++...... .......++..+ ++..+++-..++.|.++|..++. +
T Consensus 74 p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v 152 (306)
T 2p4o_A 74 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSI 152 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeE
Confidence 67788888855555542 22 46667777777654433 223445666555 55555554468899999987653 2
Q ss_pred EEec---------cCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCC-CeeeeccccccccccccCCCCCeEEEEEccC
Q 004404 643 VDWN---------DLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (755)
Q Consensus 643 v~~~---------~~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd 711 (755)
.... ..-.....+ +|++++|+++. ..+.|+.|++.. +.+... .. + .......++++.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~-~~------~-~~~~~P~gi~vd~d 222 (306)
T 2p4o_A 153 WLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP-EI------F-VEQTNIDDFAFDVE 222 (306)
T ss_dssp EEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC-EE------E-EESCCCSSEEEBTT
T ss_pred EEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc-EE------E-eccCCCCCeEECCC
Confidence 2110 011245555 88888777665 467899999875 332110 00 0 01134567889999
Q ss_pred CCeEEEEEECCCcEEEEEC-CcceE--EeecCCccEEEEEEE
Q 004404 712 SSSEVLVTSADSRIRVVDG-IDLVH--KFKGENYVQYMVCIV 750 (755)
Q Consensus 712 g~~~L~sgs~Dg~IrVWD~-~~ll~--~~~GH~~~V~sv~fs 750 (755)
|. ++++....+.|.++|. +++.. .+...-....+++|.
T Consensus 223 G~-l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 223 GN-LYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp CC-EEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEEC
T ss_pred CC-EEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEe
Confidence 96 5665566789999994 44422 222222446777664
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.82 E-value=0.0023 Score=74.19 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=98.7
Q ss_pred EecCC-cEEEEEeCC----------------CcEEEEECCCCcEEEEee---cCC-------ceEEEEEe-eCCC---cE
Q 004404 574 SWSKS-QHLLSSSMD----------------KTVRLWHLSSKTCLKIFS---HSD-------YVTCIQFN-PVDD---RY 622 (755)
Q Consensus 574 ~~spd-~~LaSgs~D----------------gtVrLWDl~t~~~~~~~~---h~~-------~VtsVafs-P~dg---~~ 622 (755)
++.+. ++++.+..+ ..|.-+|..+++.+..++ |.. ...-+... . ++ ..
T Consensus 247 a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~-~G~~~~~ 325 (599)
T 1w6s_A 247 AYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDK-DGKARKL 325 (599)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECT-TSCEEEE
T ss_pred eEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEecccc-CCcEEEE
Confidence 44444 667766654 379999999999998886 211 11112222 3 56 57
Q ss_pred EEEEECCCcEEEEECCCCcEEEeccCC-------------C-CE--------------------------EEEEEccCCC
Q 004404 623 FISGSLDAKVRIWSIPERQVVDWNDLH-------------E-MV--------------------------TAACYTPDGQ 662 (755)
Q Consensus 623 LaSgS~DgtVrIWDl~t~~~v~~~~~~-------------~-~V--------------------------tsvafSPdG~ 662 (755)
++.++.+|.|.++|..+++++...... . ++ ..++|+|+..
T Consensus 326 v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~ 405 (599)
T 1w6s_A 326 LTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRE 405 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCC
Confidence 788999999999999999987432211 0 11 2467788776
Q ss_pred EEEEEE---------------------------------------CCCcEEEEECCCCeeeeccccccccccccCCCCCe
Q 004404 663 GALVGS---------------------------------------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (755)
Q Consensus 663 ~LasGs---------------------------------------~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (755)
++++.. ..|.|.-||+.+++.+...... ..+
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----------~~~ 475 (599)
T 1w6s_A 406 LFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----------FAV 475 (599)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----------SCC
T ss_pred EEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----------CCc
Confidence 666532 3467888888888877654311 111
Q ss_pred EEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecC
Q 004404 704 TGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGE 740 (755)
Q Consensus 704 tsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH 740 (755)
.+-.....+. ++++++.|+.|+.|| +++++-+++-.
T Consensus 476 ~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 476 WGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp CSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCcceEecCC-EEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 1111122333 788899999999999 68888887643
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.79 E-value=0.0034 Score=73.74 Aligned_cols=108 Identities=10% Similarity=0.130 Sum_probs=78.2
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCC-------------ce------------------------EEEEEeeCCCcE
Q 004404 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSD-------------YV------------------------TCIQFNPVDDRY 622 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~~~~~~~h~~-------------~V------------------------tsVafsP~dg~~ 622 (755)
.++.++.+|.++++|..+|+.+..+.... ++ ..++++| +..+
T Consensus 316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~~g~ 394 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGL 394 (668)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-CCCE
Confidence 58899999999999999999885443110 00 1257787 5555
Q ss_pred EEEEE------------------------------------CCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEE
Q 004404 623 FISGS------------------------------------LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALV 666 (755)
Q Consensus 623 LaSgS------------------------------------~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~Las 666 (755)
++... .+|.|..||+.+++.+-............+...+.++++
T Consensus 395 ~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~ 474 (668)
T 1kv9_A 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ 474 (668)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE
T ss_pred EEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE
Confidence 54321 247899999999998754444444444455566889999
Q ss_pred EECCCcEEEEECCCCeeeeccc
Q 004404 667 GSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 667 Gs~DG~I~lwDl~~~~~~~~~~ 688 (755)
|+.||.++.||..+++.+..+.
T Consensus 475 g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 475 GTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp ECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCcccchhhhhhcChhheEec
Confidence 9999999999999999987654
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.70 E-value=0.0048 Score=64.88 Aligned_cols=246 Identities=12% Similarity=0.059 Sum_probs=126.2
Q ss_pred cEEEEeCCCcEEEEeeCCCCcccceeeee--------------EeecccCCEEEEEEcC-CCCEEEEEECCCcEEEEeCc
Q 004404 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQ--------------EIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVV 486 (755)
Q Consensus 422 ~~l~sg~~dg~Vriwd~~~~~~~~~~~~q--------------~l~gH~~~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~ 486 (755)
.++|.+..++.|..|+...+.+....... ........+.+|++.+ +++ |+.+...+.|..++..
T Consensus 31 ~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~ 109 (322)
T 2fp8_A 31 KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYHLSVVGSE 109 (322)
T ss_dssp SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTEEEEECTT
T ss_pred CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCCEEEEeCC
Confidence 44677788899999987655433211000 0001124588999998 665 5555455558888876
Q ss_pred CCceeeeeecccccCccccEEEeecCC-CCceeccccCCCceeeecccccccc-cccccCcccccceeeecCCCceEEec
Q 004404 487 ESERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINR-KSLSLDHMVVPETVFALSDKPICSFQ 564 (755)
Q Consensus 487 t~~~~~~l~~~~~~~~~~~v~~v~~s~-dg~~l~~~s~d~~i~~~~~~~~~~~-~s~s~d~~~~~~~v~~~s~k~i~~l~ 564 (755)
+++. ..+..............+...+ ++.+.++......- ....... ........ -..++.....+..+.
T Consensus 110 ~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~----~~~~~~~~~~~~~~g~---v~~~d~~~~~~~~~~ 181 (322)
T 2fp8_A 110 GGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYD----DRGVQQIMDTSDKTGR---LIKYDPSTKETTLLL 181 (322)
T ss_dssp CEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCC----TTCHHHHHHHTCCCEE---EEEEETTTTEEEEEE
T ss_pred CCEE-EEecccCCCCcccccceEEEecCCCEEEEECCccccc----ccccceehcccCCCce---EEEEeCCCCEEEEec
Confidence 5432 2221111111122345566777 77766654221100 0000000 00000000 011222222222222
Q ss_pred cCCCCEEEEEecCC-cEEEEE-eCCCcEEEEECCCCc--EEEEe-ecCCceEEEEEeeCCCcEEEEEEC----------C
Q 004404 565 GHLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKT--CLKIF-SHSDYVTCIQFNPVDDRYFISGSL----------D 629 (755)
Q Consensus 565 gH~~~V~~L~~spd-~~LaSg-s~DgtVrLWDl~t~~--~~~~~-~h~~~VtsVafsP~dg~~LaSgS~----------D 629 (755)
........|+|+|+ +.|+.+ ...+.|++|++.... ....+ ...+ ...|++.+ +++++++... .
T Consensus 182 ~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~ 259 (322)
T 2fp8_A 182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVD 259 (322)
T ss_dssp EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEE
T ss_pred cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCc
Confidence 22234567999998 445544 556899999987521 12222 2233 78899999 8887766654 4
Q ss_pred CcEEEEECCCCcEEEeccCC-----CCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 004404 630 AKVRIWSIPERQVVDWNDLH-----EMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (755)
Q Consensus 630 gtVrIWDl~t~~~v~~~~~~-----~~VtsvafSPdG~~LasGs~DG~I~lwDl~~ 680 (755)
+.|..+|.. ++.+..+... ..++.+++ .+++++++....+.|..+++..
T Consensus 260 ~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 260 PKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 678888864 5555433322 34666766 4555555555677888888753
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.70 E-value=0.0096 Score=68.71 Aligned_cols=142 Identities=11% Similarity=0.067 Sum_probs=92.1
Q ss_pred CcEEEEECCCCcEEEEee---cCC-------ceEEEEEe-eCCC---cEEEEEECCCcEEEEECCCCcEEEeccCCC---
Q 004404 588 KTVRLWHLSSKTCLKIFS---HSD-------YVTCIQFN-PVDD---RYFISGSLDAKVRIWSIPERQVVDWNDLHE--- 650 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~---h~~-------~VtsVafs-P~dg---~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~--- 650 (755)
+.|.-+|..+++.+..++ |.. ...-+... . ++ ..++.++.+|.|+++|..+++++.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecC-CCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 589999999999998885 221 11112222 3 56 478889999999999999998873322211
Q ss_pred C-------------------------------------------EEEEEEccCCCEEEEEE-------------------
Q 004404 651 M-------------------------------------------VTAACYTPDGQGALVGS------------------- 668 (755)
Q Consensus 651 ~-------------------------------------------VtsvafSPdG~~LasGs------------------- 668 (755)
. -..++++|+...+++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 0 01356777655555533
Q ss_pred --------------CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCc
Q 004404 669 --------------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GID 732 (755)
Q Consensus 669 --------------~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ 732 (755)
.+|.|+-||+.+++.+....... ......+ ...+. ++++++.|+.|+.|| +++
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-----~~~~g~~-----~tagg-lvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-----PLWAGVL-----ATAGN-LVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-----CCCSCCE-----EETTT-EEEEECTTSEEEEEETTTCC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-----CCcccce-----EeCCC-EEEEECCCCcEEEEECCCCC
Confidence 25789999999998876543210 0111111 11233 788899999999999 688
Q ss_pred ceEEeecCC
Q 004404 733 LVHKFKGEN 741 (755)
Q Consensus 733 ll~~~~GH~ 741 (755)
++-+++...
T Consensus 519 ~lW~~~~~~ 527 (582)
T 1flg_A 519 ELWKFQTGS 527 (582)
T ss_dssp EEEEEECSS
T ss_pred EEEEecCCC
Confidence 888887543
No 262
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.67 E-value=0.094 Score=57.29 Aligned_cols=170 Identities=7% Similarity=-0.078 Sum_probs=106.4
Q ss_pred CEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEE-C-CCcEEEEECCCCcEE
Q 004404 569 DVLDLSWSK-SQ-HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS-L-DAKVRIWSIPERQVV 643 (755)
Q Consensus 569 ~V~~L~~sp-d~-~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS-~-DgtVrIWDl~t~~~v 643 (755)
....|++.+ .+ .+++-...+.|.+.++........+. .-.....|++.| .+.+|+... . .+.|...++......
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp-~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET-TTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec-ccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 355666665 34 44455567889999987665544444 445689999999 445444444 2 378999998765444
Q ss_pred Eecc-CCCCEEEEEEccCCCEEEEEEC-CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 644 DWND-LHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 644 ~~~~-~~~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
.+.. .-.....|+++|++..|+.+.. .+.|..+|+.......... .........+|++.. ..++++-..
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~~~~l~~P~gl~v~~--~~lywtd~~ 309 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-------DEKRLAHPFSLAVFE--DKVFWTDII 309 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE-------CSSTTSSEEEEEEET--TEEEEEESS
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe-------CCCCCCCCEEEEEeC--CEEEEecCC
Confidence 3332 3367899999998877777654 5789999987654332211 011233456777643 335666667
Q ss_pred CCcEEEEE--CCcceEEeecCCccEEEEE
Q 004404 722 DSRIRVVD--GIDLVHKFKGENYVQYMVC 748 (755)
Q Consensus 722 Dg~IrVWD--~~~ll~~~~GH~~~V~sv~ 748 (755)
.+.|..+| .++.+..+.........+.
T Consensus 310 ~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 310 NEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp SCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred CCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 78899998 4666666654444444443
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.66 E-value=0.027 Score=61.31 Aligned_cols=158 Identities=6% Similarity=-0.057 Sum_probs=96.2
Q ss_pred EEEecCC-cE-EEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECC-CcEEEEECCCCcEEEec-
Q 004404 572 DLSWSKS-QH-LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLD-AKVRIWSIPERQVVDWN- 646 (755)
Q Consensus 572 ~L~~spd-~~-LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~D-gtVrIWDl~t~~~v~~~- 646 (755)
.|++.+. +. +++-...+.|.+.++........+. .-.....|++.|.++.++++-... +.|..+++.......+.
T Consensus 163 glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~ 242 (386)
T 3v65_B 163 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD 242 (386)
T ss_dssp CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence 3444442 33 4444456778888876544333333 335679999998444444444444 78888888765443332
Q ss_pred cCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcE
Q 004404 647 DLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (755)
Q Consensus 647 ~~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~I 725 (755)
..-.....|+|+|++..|+.+. ..+.|..+++.......... .......+|++. .+ .++++-...+.|
T Consensus 243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~---------~~~~~P~giav~-~~-~ly~td~~~~~V 311 (386)
T 3v65_B 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---------QGLPHPFAITVF-ED-SLYWTDWHTKSI 311 (386)
T ss_dssp SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC---------SSCSSEEEEEEE-TT-EEEEEETTTTEE
T ss_pred CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE---------CCCCCceEEEEE-CC-EEEEeeCCCCeE
Confidence 2334689999998777776665 45779999987543322111 223456788883 33 255666677889
Q ss_pred EEEE--CCcceEEeecC
Q 004404 726 RVVD--GIDLVHKFKGE 740 (755)
Q Consensus 726 rVWD--~~~ll~~~~GH 740 (755)
..+| .++.+..+...
T Consensus 312 ~~~~~~~G~~~~~i~~~ 328 (386)
T 3v65_B 312 NSANKFTGKNQEIIRNK 328 (386)
T ss_dssp EEEETTTCCSCEEEECS
T ss_pred EEEECCCCcceEEEccC
Confidence 9998 46666665543
No 264
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.62 E-value=0.01 Score=69.32 Aligned_cols=259 Identities=8% Similarity=0.068 Sum_probs=134.6
Q ss_pred EEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEEC-CCcEEEEeCcCCceeeeeecccccCccccEEEee
Q 004404 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN 510 (755)
Q Consensus 432 ~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~-DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~ 510 (755)
.+.+||..+++...+... -..+.....++++.+++++++.|+. +..+.+||..+.+-... ... ... .....+.
T Consensus 220 ~~~~yd~~t~~w~~~~~~--~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~-~~~--R~~~s~~ 293 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVT--VTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDM-QVA--RGYQSSA 293 (656)
T ss_dssp EEEEECTTTCCBCCCEEE--ECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-CCC-SSC--CSSCEEE
T ss_pred EEEEEeCCCCcEEeCccc--CCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeEC-CCC-Ccc--ccccceE
Confidence 688999988877654321 1223334446788899999999984 45899999876642211 110 111 1112233
Q ss_pred cCCCCceecccc-CCCc-----eeeecccccccccccccCcccccceeeec-CC---CceEEec-----cCCCCEEEEEe
Q 004404 511 GSPEPTSLSPKH-LDNH-----LEKKRRGRSINRKSLSLDHMVVPETVFAL-SD---KPICSFQ-----GHLDDVLDLSW 575 (755)
Q Consensus 511 ~s~dg~~l~~~s-~d~~-----i~~~~~~~~~~~~s~s~d~~~~~~~v~~~-s~---k~i~~l~-----gH~~~V~~L~~ 575 (755)
..+++.+++.+. .++. ++...... ..|.. .. .++..-. .+...+..+-.
T Consensus 294 ~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t----------------~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg 357 (656)
T 1k3i_A 294 TMSDGRVFTIGGSWSGGVFEKNGEVYSPSS----------------KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW 357 (656)
T ss_dssp ECTTSCEEEECCCCCSSSCCCCEEEEETTT----------------TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC
T ss_pred EecCCeEEEEeCcccCCcccccceEeCCCC----------------CcceeCCCccccccccccccceeecCCceEEEEC
Confidence 345667766665 2211 11111100 00100 00 0000000 01111111111
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCcEEEEee-cC---------CceEEEEEeeCCCcEEEEEECCC-----------cEEE
Q 004404 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HS---------DYVTCIQFNPVDDRYFISGSLDA-----------KVRI 634 (755)
Q Consensus 576 spd~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~---------~~VtsVafsP~dg~~LaSgS~Dg-----------tVrI 634 (755)
. ++.++.......|..||..+........ +. ..-.++.|...++++++.|+.++ .|.+
T Consensus 358 ~-~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~ 436 (656)
T 1k3i_A 358 K-KGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITL 436 (656)
T ss_dssp G-GGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEEC
T ss_pred C-CCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEc
Confidence 1 1222222234567889988776554443 11 12345555444678888887543 6888
Q ss_pred EECCCCcEEEec--cCCC--CEEEEEEccCCCEEEEEECC-----------CcEEEEECCCCeeeeccccccccccccCC
Q 004404 635 WSIPERQVVDWN--DLHE--MVTAACYTPDGQGALVGSYK-----------GSCHLYNTSENKLQQKSPINLQNKKKRSH 699 (755)
Q Consensus 635 WDl~t~~~v~~~--~~~~--~VtsvafSPdG~~LasGs~D-----------G~I~lwDl~~~~~~~~~~i~~~~~~~~~h 699 (755)
||..+.+..... .... .-.+++..|+|+++++|+.+ ..+.+||..+.+-....... ..
T Consensus 437 yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~-------~~ 509 (656)
T 1k3i_A 437 GEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS-------IV 509 (656)
T ss_dssp CSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS-------SC
T ss_pred CCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC-------Cc
Confidence 998887665543 2221 22355677899999998754 46899999887654322111 11
Q ss_pred CCCeEEEEEccCCCeEEEEEEC
Q 004404 700 QRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 700 ~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
........+.|+++ +++.|+.
T Consensus 510 R~~hs~a~ll~dg~-v~v~GG~ 530 (656)
T 1k3i_A 510 RVYHSISLLLPDGR-VFNGGGG 530 (656)
T ss_dssp CCTTEEEEECTTSC-EEEEECC
T ss_pred cccccHhhcCCCcE-EEecCCC
Confidence 11223345678887 7777774
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.60 E-value=0.069 Score=57.16 Aligned_cols=158 Identities=7% Similarity=-0.058 Sum_probs=97.5
Q ss_pred EEEEecCC-cE-EEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECC-CcEEEEECCCCcEEEec
Q 004404 571 LDLSWSKS-QH-LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLD-AKVRIWSIPERQVVDWN 646 (755)
Q Consensus 571 ~~L~~spd-~~-LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~D-gtVrIWDl~t~~~v~~~ 646 (755)
..|++.+. +. +++-...+.|.+.++........+. .-.....|+++|.++.++++-... +.|..+++.......+.
T Consensus 119 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 198 (349)
T 3v64_C 119 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA 198 (349)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC
T ss_pred cEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE
Confidence 34555542 44 4454556788888887554333333 345679999999444455554445 78888888765443332
Q ss_pred c-CCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCc
Q 004404 647 D-LHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (755)
Q Consensus 647 ~-~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~ 724 (755)
. .-.....++++|++..|+.+. ..+.|..+++.......... .......++++. .+ .++++-...+.
T Consensus 199 ~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~---------~~~~~P~giav~-~~-~ly~td~~~~~ 267 (349)
T 3v64_C 199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---------QGLPHPFAITVF-ED-SLYWTDWHTKS 267 (349)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---------SSCSSEEEEEEE-TT-EEEEEETTTTE
T ss_pred ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe---------CCCCCceEEEEE-CC-EEEEecCCCCe
Confidence 2 234689999999777777665 45779999987643322111 223456778873 33 25555566788
Q ss_pred EEEEE--CCcceEEeec
Q 004404 725 IRVVD--GIDLVHKFKG 739 (755)
Q Consensus 725 IrVWD--~~~ll~~~~G 739 (755)
|..++ .++.+..+..
T Consensus 268 V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 268 INSANKFTGKNQEIIRN 284 (349)
T ss_dssp EEEEETTTCCSCEEEEC
T ss_pred EEEEEccCCCccEEecc
Confidence 98888 4555555543
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.60 E-value=0.0052 Score=71.19 Aligned_cols=86 Identities=9% Similarity=-0.017 Sum_probs=54.9
Q ss_pred CCCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEE
Q 004404 628 LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (755)
Q Consensus 628 ~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (755)
..|.|..||+.+++++-......+...-.+...+..+++++.||.++.||.++++++..+.+. ......-+.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~--------~g~~~~P~~ 522 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP--------SGAIGYPMT 522 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--------SCCCSCCEE
T ss_pred CcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC--------CCcEeccEE
Confidence 347899999999988744433322222223335678888999999999999999998865431 111112244
Q ss_pred EccCCCeEEEEEEC
Q 004404 708 FAPGSSSEVLVTSA 721 (755)
Q Consensus 708 fsPdg~~~L~sgs~ 721 (755)
|..+|+.++++.+.
T Consensus 523 y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 523 YTHKGTQYVAIYYG 536 (599)
T ss_dssp EEETTEEEEEEEEC
T ss_pred EEeCCEEEEEEEcc
Confidence 56777655655543
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.59 E-value=0.11 Score=54.76 Aligned_cols=160 Identities=8% Similarity=-0.045 Sum_probs=98.3
Q ss_pred EEEEEecC-CcE-EEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEEC-C-CcEEEEECCCCcEEE
Q 004404 570 VLDLSWSK-SQH-LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL-D-AKVRIWSIPERQVVD 644 (755)
Q Consensus 570 V~~L~~sp-d~~-LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~-D-gtVrIWDl~t~~~v~ 644 (755)
...|++.+ .+. +++-...+.|.++++........+. .-.....|++.| .+..|+.+.. . +.|..+++.......
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp-~~g~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCC-CCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence 34566654 344 4454567889999987554443333 345779999998 4454444443 3 688888886544333
Q ss_pred ec-cCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC
Q 004404 645 WN-DLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (755)
Q Consensus 645 ~~-~~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D 722 (755)
+. ..-.....++++|++..|+.+. ..+.|..+|+.......... .........++++.. + .++++-...
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~-------~~~~~~~P~giav~~-~-~ly~~d~~~ 228 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-------DEKRLAHPFSLAVFE-D-KVFWTDIIN 228 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-------CTTTTSSEEEEEEET-T-EEEEEETTT
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEee-------cCCccCCcEEEEEEC-C-EEEEEECCC
Confidence 32 2335789999999887777765 45689999997543322111 001223467777753 3 355555677
Q ss_pred CcEEEEE--CCcceEEeec
Q 004404 723 SRIRVVD--GIDLVHKFKG 739 (755)
Q Consensus 723 g~IrVWD--~~~ll~~~~G 739 (755)
++|..+| .++.+..+..
T Consensus 229 ~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 229 EAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp TEEEEEETTTCCCCEEEEC
T ss_pred CeEEEEeCCCCcceEEEec
Confidence 8899998 4555555543
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.54 E-value=0.0037 Score=72.20 Aligned_cols=85 Identities=14% Similarity=0.050 Sum_probs=55.3
Q ss_pred CCcEEEEECCCCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEE
Q 004404 629 DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (755)
Q Consensus 629 DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (755)
+|.|..||+.+++.+-.......+..-.+...+..+++|+.||.++.||.++++++..+... ......-+.|
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~--------~g~~a~P~~y 536 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG--------SGIVSPPITW 536 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--------SCCCSCCEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC--------CCcccCceEE
Confidence 68899999999998743333333322222234668888999999999999999998865431 1111122456
Q ss_pred ccCCCeEEEEEEC
Q 004404 709 APGSSSEVLVTSA 721 (755)
Q Consensus 709 sPdg~~~L~sgs~ 721 (755)
..+|+.++++.+.
T Consensus 537 ~~~G~qYv~~~~G 549 (582)
T 1flg_A 537 EQDGEQYLGVTVG 549 (582)
T ss_dssp EETTEEEEEEEEC
T ss_pred EECCEEEEEEEcc
Confidence 6788756665544
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.44 E-value=0.0031 Score=75.13 Aligned_cols=142 Identities=9% Similarity=0.075 Sum_probs=78.4
Q ss_pred EEecCC-cEEEEEeCC-----CcEEEEECCCCc--EEEEee--cCCceEEEEEeeCCCcEEEEEEC---CCcEEEEECCC
Q 004404 573 LSWSKS-QHLLSSSMD-----KTVRLWHLSSKT--CLKIFS--HSDYVTCIQFNPVDDRYFISGSL---DAKVRIWSIPE 639 (755)
Q Consensus 573 L~~spd-~~LaSgs~D-----gtVrLWDl~t~~--~~~~~~--h~~~VtsVafsP~dg~~LaSgS~---DgtVrIWDl~t 639 (755)
++|+|+ ..|+....| ..|+++++.++. ....+. .......+.|+| |+++|+..+. ...|.++|+.+
T Consensus 226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCC
Confidence 456666 344444443 257888887764 223333 345577889999 9988876653 34588889887
Q ss_pred C--cE--EEeccC-CCCEEEEEEccCCCEEEE-EECC----CcEEEEECCCC-eeee-ccccccccccccCCCC--CeEE
Q 004404 640 R--QV--VDWNDL-HEMVTAACYTPDGQGALV-GSYK----GSCHLYNTSEN-KLQQ-KSPINLQNKKKRSHQR--KITG 705 (755)
Q Consensus 640 ~--~~--v~~~~~-~~~VtsvafSPdG~~Las-Gs~D----G~I~lwDl~~~-~~~~-~~~i~~~~~~~~~h~~--~Vts 705 (755)
+ +. ..+... .....++.|+. |..|+. ...+ ..|+.+++.+. .... .+ .+.. .+..
T Consensus 305 ~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li----------~~~~~~~l~~ 373 (751)
T 2xe4_A 305 GNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV----------DHSEDVFMES 373 (751)
T ss_dssp CTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE----------CCCSSEEEEE
T ss_pred CCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE----------CCCCCcEEEE
Confidence 5 33 333332 23445555544 555554 4333 35777777642 2111 11 2222 3455
Q ss_pred EEEccCCCeEEEEEECCCcEEEE
Q 004404 706 FQFAPGSSSEVLVTSADSRIRVV 728 (755)
Q Consensus 706 l~fsPdg~~~L~sgs~Dg~IrVW 728 (755)
+.+. +..++++...++..+||
T Consensus 374 ~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 374 IAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEC--SSEEEEEEEETTEEEEE
T ss_pred EEEE--CCEEEEEEEeCCEEEEE
Confidence 5554 45466677777765443
No 270
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.44 E-value=0.018 Score=59.13 Aligned_cols=209 Identities=11% Similarity=0.080 Sum_probs=120.6
Q ss_pred eEeecccCCEEEEEEcCCCCEEE-EEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCcee
Q 004404 450 QEIQAHNGSIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (755)
Q Consensus 450 q~l~gH~~~I~sI~fSpdg~~La-Tgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~ 528 (755)
+.+.+-.+.+..|+|+|++..|+ ....++.|...|.. ++....+.. ....-.-.+++.+++.++++......+.
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----~g~~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL----DFVKDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC----SSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec----CCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence 34566667899999999766444 56778888888887 665555421 1112334445556666555433332222
Q ss_pred eecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECC---CCcEEEEe
Q 004404 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS---SKTCLKIF 604 (755)
Q Consensus 529 ~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs~DgtVrLWDl~---t~~~~~~~ 604 (755)
...... +..........+ ++. ...+......|+|.|. +.|+++.......||.+. ....+..+
T Consensus 95 ~~~v~~---------~~~i~~~~~~~~---~~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~ 161 (255)
T 3qqz_A 95 VISLTP---------NSEVKILKKIKI---PLQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHIS 161 (255)
T ss_dssp EEEECT---------TCCEEEEEEEEC---CCS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEE
T ss_pred EEEcCC---------CCeeeeeeeecc---ccc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeee
Confidence 111111 100000000000 000 0123455789999997 577766665555555543 11122222
Q ss_pred e--------cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCC----------CCEEEEEEccCCCEEEE
Q 004404 605 S--------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH----------EMVTAACYTPDGQGALV 666 (755)
Q Consensus 605 ~--------h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~----------~~VtsvafSPdG~~Las 666 (755)
. +...+.+++++|..+++++.......|.++|... +++...... ...-.|+|.++|+ |++
T Consensus 162 ~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyI 239 (255)
T 3qqz_A 162 KDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYI 239 (255)
T ss_dssp ECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEE
T ss_pred cchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEE
Confidence 1 2345789999997777777777788899999764 455443333 3678999999997 555
Q ss_pred EECCCcEEEEEC
Q 004404 667 GSYKGSCHLYNT 678 (755)
Q Consensus 667 Gs~DG~I~lwDl 678 (755)
.+.-+.++.|.-
T Consensus 240 vsE~n~~y~f~~ 251 (255)
T 3qqz_A 240 VSEPNRFYRFTP 251 (255)
T ss_dssp EETTTEEEEEEC
T ss_pred EcCCceEEEEEe
Confidence 577777777654
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.40 E-value=0.057 Score=57.84 Aligned_cols=154 Identities=10% Similarity=0.061 Sum_probs=103.5
Q ss_pred CCCEEEEEecCC-cEEEEE-eCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE
Q 004404 567 LDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (755)
Q Consensus 567 ~~~V~~L~~spd-~~LaSg-s~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v 643 (755)
...+..|+|.+. +.|+.+ ...+.|+.+++........+. .......+++.+.+++++++-...+.|.+.++......
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 345889999974 655544 467889999988765444443 33456789998745566666666789999998765433
Q ss_pred Eec-cCCCCEEEEEEccCCCEEEEEEC-C-CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 644 DWN-DLHEMVTAACYTPDGQGALVGSY-K-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 644 ~~~-~~~~~VtsvafSPdG~~LasGs~-D-G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
.+. ..-.....+++.|.+..|+.... . +.|+.+++......... .......++|+|+|++..++++-.
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---------~~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA---------DTHLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC---------CSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE---------ECCCCCcceEEEeCCCCEEEEEEC
Confidence 333 23356899999996666665543 4 77888888754332211 122345789999987774555556
Q ss_pred CCCcEEEEE
Q 004404 721 ADSRIRVVD 729 (755)
Q Consensus 721 ~Dg~IrVWD 729 (755)
..++|..+|
T Consensus 223 ~~~~I~~~~ 231 (349)
T 3v64_C 223 KHHVIERAN 231 (349)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEe
Confidence 678899998
No 272
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.39 E-value=0.018 Score=61.80 Aligned_cols=177 Identities=12% Similarity=0.223 Sum_probs=119.7
Q ss_pred eeeecCCCceEEeccCCCCEEEEEecCCc--------EEEEEeC---CCcEEEEECC--CCcEEEEee-------cC-Cc
Q 004404 551 TVFALSDKPICSFQGHLDDVLDLSWSKSQ--------HLLSSSM---DKTVRLWHLS--SKTCLKIFS-------HS-DY 609 (755)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~L~~spd~--------~LaSgs~---DgtVrLWDl~--t~~~~~~~~-------h~-~~ 609 (755)
.++++.++.+..+.. +.++.+..-|+- .+++... +++|++|++. ++. +..+. .. ..
T Consensus 53 ~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~ 129 (355)
T 3amr_A 53 VVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINE 129 (355)
T ss_dssp EEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSS
T ss_pred EEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCC
Confidence 577888888888764 456666665531 2333333 5899999773 443 44442 11 56
Q ss_pred eEEEEE--eeCCCc-EEEEEECCCcEEEEECC-------CCcEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 004404 610 VTCIQF--NPVDDR-YFISGSLDAKVRIWSIP-------ERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (755)
Q Consensus 610 VtsVaf--sP~dg~-~LaSgS~DgtVrIWDl~-------t~~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~ 679 (755)
+..+|+ +|..+. +++....+|.+..|++. +.++++.+.....+-.++..+....|+++-.+..|..|+.+
T Consensus 130 pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 130 VYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred eeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 777888 663343 67788889999999882 33556777778899999999999999999999888888865
Q ss_pred -----CCeeeeccccccccccccCC-CCCeEEEEE--ccCCCeEEEEEE-CCCcEEEEEC---CcceEEee
Q 004404 680 -----ENKLQQKSPINLQNKKKRSH-QRKITGFQF--APGSSSEVLVTS-ADSRIRVVDG---IDLVHKFK 738 (755)
Q Consensus 680 -----~~~~~~~~~i~~~~~~~~~h-~~~Vtsl~f--sPdg~~~L~sgs-~Dg~IrVWD~---~~ll~~~~ 738 (755)
+++++.... .++ ...+.+|++ .+++..+|++++ .+.+..|||. .+.+..|.
T Consensus 210 p~~~~~~~~v~~~~--------~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 210 PDGGSNGTVIDRAD--------GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TTSCSCCEEEEEBS--------SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred cCCCCCceEEEEec--------CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 233333211 122 236888887 455554566666 6779999993 46777775
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.36 E-value=0.031 Score=60.76 Aligned_cols=155 Identities=10% Similarity=0.071 Sum_probs=103.7
Q ss_pred CCCCEEEEEecCC-cEEE-EEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE
Q 004404 566 HLDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (755)
Q Consensus 566 H~~~V~~L~~spd-~~La-Sgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~ 642 (755)
....+..|+|.+. +.|+ +-...+.|+.+++........+. .......|++.+..+.++++-...+.|.+.++.....
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 193 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence 3445889999974 6555 44467889999988766544443 3345678899874555666666678899998876543
Q ss_pred EEec-cCCCCEEEEEEccCCCEEEEEEC-C-CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 643 VDWN-DLHEMVTAACYTPDGQGALVGSY-K-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 643 v~~~-~~~~~VtsvafSPdG~~LasGs~-D-G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
..+. ..-.....+++.|.+..|+.... . +.|+.+++.......... ......++|+|+|++..++++-
T Consensus 194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~---------~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD---------THLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---------SSCSCEEEEEEEGGGTEEEEEE
T ss_pred EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE---------CCCCCeeeEEEeCCCCEEEEEE
Confidence 3333 23357899999997766666554 3 678888887543322111 2234578999998777455555
Q ss_pred ECCCcEEEEE
Q 004404 720 SADSRIRVVD 729 (755)
Q Consensus 720 s~Dg~IrVWD 729 (755)
+..++|..+|
T Consensus 265 ~~~~~I~~~d 274 (386)
T 3v65_B 265 AKHHVIERAN 274 (386)
T ss_dssp TTTTEEEEEC
T ss_pred CCCCEEEEEe
Confidence 6678899998
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=0.0037 Score=69.36 Aligned_cols=151 Identities=16% Similarity=0.127 Sum_probs=99.9
Q ss_pred CEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEEC-CC----cEEEEECCCCc
Q 004404 569 DVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA----KVRIWSIPERQ 641 (755)
Q Consensus 569 ~V~~L~~sp-d-~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~-Dg----tVrIWDl~t~~ 641 (755)
....|+++| + +.|+.+...+.|+.+|+..+..............|+|++ ++++|+.+.. .+ .+.+++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 457789997 3 777777766889999998777665555666789999999 8885555554 22 2333443 222
Q ss_pred EE--EeccCCCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 642 VV--DWNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 642 ~v--~~~~~~~~VtsvafSP-dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
.. ...........++++| +|.++++-..++.|+.|+...+........ ........++|+|++..++++
T Consensus 216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~--------~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI--------QDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC--------SSSSCCEEEEECTTSSEEEEE
T ss_pred eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc--------CCCCcceeEEEcCCCCEEEEE
Confidence 11 1111233456788999 676666666678999999987765322111 122456799999999844555
Q ss_pred EECCCcEEEEE
Q 004404 719 TSADSRIRVVD 729 (755)
Q Consensus 719 gs~Dg~IrVWD 729 (755)
-...++|++++
T Consensus 288 d~~~~~I~~~~ 298 (430)
T 3tc9_A 288 VVNQHYILRSD 298 (430)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCEEEEEe
Confidence 56788999987
No 275
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.34 E-value=0.11 Score=62.06 Aligned_cols=159 Identities=8% Similarity=-0.076 Sum_probs=97.8
Q ss_pred EEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEE-CC-CcEEEEECCCCcEEE
Q 004404 570 VLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS-LD-AKVRIWSIPERQVVD 644 (755)
Q Consensus 570 V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS-~D-gtVrIWDl~t~~~v~ 644 (755)
...|++.+. ..+++-...+.|.+.++........+. .-.....|++.| ...+|+... .. +.|.+.++.......
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp-~~g~LYwtD~g~~~~I~~~~~dG~~~~~ 551 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNGVDIYS 551 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEec-CCCCEEEecCCCCCeEEEEecCCCceEE
Confidence 344555543 445555667889999987555444443 445689999999 544444443 33 689999987665544
Q ss_pred eccC-CCCEEEEEEccCCCEEEEEEC-CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC
Q 004404 645 WNDL-HEMVTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (755)
Q Consensus 645 ~~~~-~~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D 722 (755)
+... -.....|++++.+..|+.+.. .+.|..+++........... ........+|++..+ .++++-...
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-------~~~l~~P~glav~~~--~lYwtD~~~ 622 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-------EKRLAHPFSLAVFED--KVFWTDIIN 622 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-------TTTTSSEEEEEEETT--EEEEEETTT
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-------CCccCCCCEEEEeCC--EEEEEECCC
Confidence 4433 357899999987777777654 56799999876544332110 012234456666433 245555567
Q ss_pred CcEEEEE--CCcceEEee
Q 004404 723 SRIRVVD--GIDLVHKFK 738 (755)
Q Consensus 723 g~IrVWD--~~~ll~~~~ 738 (755)
+.|...| .++.+..+.
T Consensus 623 ~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CEEEEEeCCCCcceEEee
Confidence 8888888 454445544
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.31 E-value=0.18 Score=53.13 Aligned_cols=170 Identities=9% Similarity=0.031 Sum_probs=94.4
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCceEEEEEeeCCCcEEEEEECCCcEE-EEEC--CCCcE
Q 004404 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVR-IWSI--PERQV 642 (755)
Q Consensus 568 ~~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~~~~~--~h~~~VtsVafsP~dg~~LaSgS~DgtVr-IWDl--~t~~~ 642 (755)
+.+..|.+.+++.++.++.++.|..- .+.++.-... .....+..+.+.| ++.+++.+. .|.|. -+|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 34667777666666666666655332 2233332222 2556789999998 777776664 45443 3442 33333
Q ss_pred EEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC
Q 004404 643 VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (755)
Q Consensus 643 v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D 722 (755)
+. ......+..+++.++++.++ ++.+|.+++.+...++.-...... . ..+...+..+.+.+++. +++++.+
T Consensus 199 ~~-~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~----~-~~~~~~~~~v~~~~~~~--~~~~g~~ 269 (327)
T 2xbg_A 199 HN-RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSP----L-RRNSVGFLDLAYRTPNE--VWLAGGA 269 (327)
T ss_dssp EE-CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCT----T-SSCCSCEEEEEESSSSC--EEEEEST
T ss_pred CC-CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCC----c-ccCCcceEEEEecCCCE--EEEEeCC
Confidence 32 23456789999999987654 456788877653333332221100 0 02234688999998764 5555567
Q ss_pred CcEEEE-ECCcceEEee---cCCccEEEEEE
Q 004404 723 SRIRVV-DGIDLVHKFK---GENYVQYMVCI 749 (755)
Q Consensus 723 g~IrVW-D~~~ll~~~~---GH~~~V~sv~f 749 (755)
+.|.+- |.++--..+. .+...++.+.|
T Consensus 270 g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~ 300 (327)
T 2xbg_A 270 GALLCSQDGGQTWQQDVDVKKVPSNFYKILF 300 (327)
T ss_dssp TCEEEESSTTSSCEECGGGTTSSSCCCEEEE
T ss_pred CeEEEeCCCCcccEEcCccCCCCCCeEEEEE
Confidence 777443 4443333333 22344566655
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.28 E-value=0.018 Score=59.21 Aligned_cols=175 Identities=10% Similarity=0.163 Sum_probs=114.4
Q ss_pred EeccCCCCEEEEEecCC-cE-EEEEeCCCcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEEC
Q 004404 562 SFQGHLDDVLDLSWSKS-QH-LLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637 (755)
Q Consensus 562 ~l~gH~~~V~~L~~spd-~~-LaSgs~DgtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl 637 (755)
.+.+-...+..|+|.|+ +. +++...++.|...|.. ++.++.+. .....-.|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 45566678999999986 54 4557778999999998 88888875 335788999988 7777777666788999987
Q ss_pred CCCcE---EEec-------cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccc-cccccccCCCCCeEEE
Q 004404 638 PERQV---VDWN-------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN-LQNKKKRSHQRKITGF 706 (755)
Q Consensus 638 ~t~~~---v~~~-------~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~-~~~~~~~~h~~~Vtsl 706 (755)
..... +... ........++|+|.++.|+++.......||.+........+.+. ........+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65431 2221 12235689999999988888877666666665410000000100 0000011233457899
Q ss_pred EEccCCCeEEEEEECCCcEEEEE-CCcceEEee
Q 004404 707 QFAPGSSSEVLVTSADSRIRVVD-GIDLVHKFK 738 (755)
Q Consensus 707 ~fsPdg~~~L~sgs~Dg~IrVWD-~~~ll~~~~ 738 (755)
+++|....+++.......|.++| .++++..+.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~ 211 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMS 211 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEE
Confidence 99998776666667778888999 455554443
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.25 E-value=0.2 Score=52.86 Aligned_cols=157 Identities=8% Similarity=-0.013 Sum_probs=96.3
Q ss_pred EEEEecC-CcE-EEEEeCCCcEEEEECCCCcEEEEe-ecCCceEEEEEeeCCCcEEEEEEC--CCcEEEEECCCCcEEEe
Q 004404 571 LDLSWSK-SQH-LLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL--DAKVRIWSIPERQVVDW 645 (755)
Q Consensus 571 ~~L~~sp-d~~-LaSgs~DgtVrLWDl~t~~~~~~~-~h~~~VtsVafsP~dg~~LaSgS~--DgtVrIWDl~t~~~v~~ 645 (755)
..|++.+ .+. +++-...+.|.++++........+ ..-.....|++.| .+.+|+.... .+.|...++.......+
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~~~ 160 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGSSRFII 160 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCeEEE
Confidence 3455554 343 444455678888888754433333 3445678999998 5455554442 57888888865433332
Q ss_pred c-cCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC
Q 004404 646 N-DLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (755)
Q Consensus 646 ~-~~~~~VtsvafSPdG~~LasGs-~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg 723 (755)
. ..-.....++++|++..|+.+. ..+.|..+|+......... ........++++..+ .++.+-...+
T Consensus 161 ~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~---------~~~~~~P~glav~~~--~lywtd~~~~ 229 (318)
T 3sov_A 161 INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---------KGSLPHPFALTLFED--ILYWTDWSTH 229 (318)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------CSCCSCEEEEEEETT--EEEEEETTTT
T ss_pred EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe---------cCCCCCceEEEEeCC--EEEEEecCCC
Confidence 2 2335689999999777777665 4678999998754332211 123345667777543 2555656678
Q ss_pred cEEEEE--CCcceEEeec
Q 004404 724 RIRVVD--GIDLVHKFKG 739 (755)
Q Consensus 724 ~IrVWD--~~~ll~~~~G 739 (755)
.|..++ .++.+..+..
T Consensus 230 ~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 230 SILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEEEETTTCCSCEEEEC
T ss_pred eEEEEECCCCCceEEEeC
Confidence 899998 3555555543
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.24 E-value=0.065 Score=56.40 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=100.0
Q ss_pred CCCEEEEEecCC-cEEE-EEeCCCcEEEEECCC----CcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC
Q 004404 567 LDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLSS----KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (755)
Q Consensus 567 ~~~V~~L~~spd-~~La-Sgs~DgtVrLWDl~t----~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t 639 (755)
...+..++|.+. +.|+ +-...+.|+.+++.. ......+. .-.....|++.+.+++++++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 456789999975 5555 445568999999876 22222232 2245688999873455556666788999999876
Q ss_pred CcEEEecc-CCCCEEEEEEccCCCEEEEEECC--CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEE
Q 004404 640 RQVVDWND-LHEMVTAACYTPDGQGALVGSYK--GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (755)
Q Consensus 640 ~~~v~~~~-~~~~VtsvafSPdG~~LasGs~D--G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L 716 (755)
.....+.. .......+++.|.+..|+..... +.|..+++......... .......++|++.|++..++
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~---------~~~~~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------TENIQWPNGITLDLLSGRLY 179 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE---------CSSCSCEEEEEEETTTTEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE---------ECCCCCceEEEEeccCCEEE
Confidence 55443332 33578999999977666665543 68888888654322111 12235678999999877445
Q ss_pred EEEECCCcEEEEE
Q 004404 717 LVTSADSRIRVVD 729 (755)
Q Consensus 717 ~sgs~Dg~IrVWD 729 (755)
++-...++|..+|
T Consensus 180 ~~D~~~~~I~~~d 192 (316)
T 1ijq_A 180 WVDSKLHSISSID 192 (316)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCeEEEEe
Confidence 5556678999999
No 280
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.23 E-value=0.28 Score=51.66 Aligned_cols=151 Identities=11% Similarity=0.009 Sum_probs=90.4
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEE-EC--CCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcE
Q 004404 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLW-HL--SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (755)
Q Consensus 566 H~~~V~~L~~spd~~LaSgs~DgtVrLW-Dl--~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~ 642 (755)
+...+..+.+.+++.++..+..+.|..- |- .+-+.+ .......+..+.+.+ ++.++ .++.+|.+++.+...++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCCCe
Confidence 4456888999988666666666665543 32 222332 123566789999988 76655 556688887765332322
Q ss_pred EEecc-----CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEE
Q 004404 643 VDWND-----LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (755)
Q Consensus 643 v~~~~-----~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~ 717 (755)
-.... ....+.++++.+++..++++. +|.| ++....++.-..... ...+...+..+.|.+++ .++
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~------~~~~~~~~~~v~~~~~~--~~~ 307 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVD------VKKVPSNFYKILFFSPD--QGF 307 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGG------GTTSSSCCCEEEEEETT--EEE
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCc------cCCCCCCeEEEEEECCC--ceE
Confidence 11111 123588999999887766654 6766 444554533221110 00223557788887654 577
Q ss_pred EEECCCcEEEEE
Q 004404 718 VTSADSRIRVVD 729 (755)
Q Consensus 718 sgs~Dg~IrVWD 729 (755)
+++.+|.|.-++
T Consensus 308 ~~G~~G~i~~~~ 319 (327)
T 2xbg_A 308 ILGQKGILLRYV 319 (327)
T ss_dssp EECSTTEEEEEC
T ss_pred EEcCCceEEEEc
Confidence 888899888776
No 281
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.23 E-value=0.038 Score=57.58 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=101.0
Q ss_pred ceEEeccCCCCEEEEEecCCcEEEEEe-CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECCC--cEEEE
Q 004404 559 PICSFQGHLDDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--KVRIW 635 (755)
Q Consensus 559 ~i~~l~gH~~~V~~L~~spd~~LaSgs-~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~Dg--tVrIW 635 (755)
.+..|... .....++|.+++.|+.+. ..+.|..||... .....+.....+..|++.+ +++++++..... .|..+
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEE
Confidence 34445432 457889999986555554 688999999775 4444555556789999999 888666554332 47777
Q ss_pred ECCCCcEEEeccC--CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec-cccccccccccCCCCCeEEEEEccCC
Q 004404 636 SIPERQVVDWNDL--HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK-SPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 636 Dl~t~~~v~~~~~--~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~-~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
+..++++..+... ......++..+++..+++-..++.|+++|...+..... ..-.+............+++ +|++
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 8788876543322 23445666666554444444589999999876532110 00000000001122345666 7888
Q ss_pred CeEEEEEECCCcEEEEE
Q 004404 713 SSEVLVTSADSRIRVVD 729 (755)
Q Consensus 713 ~~~L~sgs~Dg~IrVWD 729 (755)
..++++-...++|.+||
T Consensus 179 ~~lyv~d~~~~~I~~~~ 195 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIP 195 (306)
T ss_dssp TEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEE
Confidence 75555556788999998
No 282
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.18 E-value=0.073 Score=57.05 Aligned_cols=120 Identities=14% Similarity=0.192 Sum_probs=88.4
Q ss_pred CCEEEEEe--cCC-c--EEEEEeCCCcEEEEECC-------CCcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEE
Q 004404 568 DDVLDLSW--SKS-Q--HLLSSSMDKTVRLWHLS-------SKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (755)
Q Consensus 568 ~~V~~L~~--spd-~--~LaSgs~DgtVrLWDl~-------t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIW 635 (755)
..+..+|+ +|. + ++++...+|.+..|++. +.+.+++|...+.+-.+...+ ....|+.+-++.-|..+
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~ 206 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYGRLYIAEEDEAIWKF 206 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCCeEEEecccceEEEE
Confidence 45667777 664 3 68888889999999883 346778888788899999998 77889999998777777
Q ss_pred ECC-----CCcEEEeccCC---CCEEEEEE--ccCCC-EEEEEE-CCCcEEEEECC-CCeeeeccc
Q 004404 636 SIP-----ERQVVDWNDLH---EMVTAACY--TPDGQ-GALVGS-YKGSCHLYNTS-ENKLQQKSP 688 (755)
Q Consensus 636 Dl~-----t~~~v~~~~~~---~~Vtsvaf--SPdG~-~LasGs-~DG~I~lwDl~-~~~~~~~~~ 688 (755)
+.. +++++...... ..+..|++ .++++ +|++++ .+.+..+||.. ..+.+..+.
T Consensus 207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 754 34566554333 46888888 55666 777777 56789999997 566666554
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.18 E-value=0.12 Score=56.51 Aligned_cols=158 Identities=10% Similarity=0.001 Sum_probs=105.1
Q ss_pred eccCCCCEEEEEecCC-cEEEEE-eCCCcEEEEECCCC----cEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEE
Q 004404 563 FQGHLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSK----TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (755)
Q Consensus 563 l~gH~~~V~~L~~spd-~~LaSg-s~DgtVrLWDl~t~----~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIW 635 (755)
+......+..|+|.+. +.|+.+ ...+.|+.+++... .....+. .......|++.+..++++++-...+.|.+.
T Consensus 107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~ 186 (400)
T 3p5b_L 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 186 (400)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence 3344567889999975 655544 45788999998752 2333333 445678999987455666666677899999
Q ss_pred ECCCCcEEEecc-CCCCEEEEEEccCCCEEEEEEC--CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 636 SIPERQVVDWND-LHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 636 Dl~t~~~v~~~~-~~~~VtsvafSPdG~~LasGs~--DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
++.......+.. .-.....|++.|.+.+|+.... .+.|+..++.......... ..-...++|++.|++
T Consensus 187 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~---------~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 187 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---------ENIQWPNGITLDLLS 257 (400)
T ss_dssp CTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC---------SSCSCEEEEEEETTT
T ss_pred eCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE---------CCCCceEEEEEEeCC
Confidence 988765544333 3456899999997767766653 3789988887644332211 223567899999887
Q ss_pred CeEEEEEECCCcEEEEE
Q 004404 713 SSEVLVTSADSRIRVVD 729 (755)
Q Consensus 713 ~~~L~sgs~Dg~IrVWD 729 (755)
..++++-...++|..+|
T Consensus 258 ~~lY~aD~~~~~I~~~d 274 (400)
T 3p5b_L 258 GRLYWVDSKLHSISSID 274 (400)
T ss_dssp TEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEe
Confidence 74444446678899998
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.00 E-value=0.05 Score=60.25 Aligned_cols=245 Identities=7% Similarity=-0.016 Sum_probs=132.3
Q ss_pred CEEEEEEcCC--CCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccccc
Q 004404 458 SIWSIKFSLD--GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (755)
Q Consensus 458 ~I~sI~fSpd--g~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~ 535 (755)
....|+|.|+ ...|+.+...+.|+.++..+++..... ........+++.+++.++++....... ...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~------~~~~~P~giavd~dG~lyVad~~~~~~-----~~g 208 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT------TNIGQCADVNFTLNGDMVVVDDQSSDT-----NTG 208 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC------CCCSCEEEEEECTTCCEEEEECCSCTT-----SEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee------cCCCCccEEEECCCCCEEEEcCCCCcc-----cce
Confidence 4568999984 344555544488999998766543221 123445677888888855554322100 000
Q ss_pred ccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECCCCcEEE-Eee--cCCce
Q 004404 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-SQHLLSSS-MDKTVRLWHLSSKTCLK-IFS--HSDYV 610 (755)
Q Consensus 536 ~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp-d~~LaSgs-~DgtVrLWDl~t~~~~~-~~~--h~~~V 610 (755)
+. .+...... .....+. .......+++.| ++.|+.+. .++.|+.++..++.... .+. ....-
T Consensus 209 v~--~~~~~~~~----------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~ 275 (433)
T 4hw6_A 209 IY--LFTRASGF----------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSN 275 (433)
T ss_dssp EE--EECGGGTT----------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSC
T ss_pred EE--EEECCCCe----------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCc
Confidence 00 00000000 0001111 123456688888 56666555 56789999988776633 332 22334
Q ss_pred EEEEEeeCCCcEE-EEEECCCcEEEEECC--CCcE---EEeccC---------------CCCEEEEEE---------ccC
Q 004404 611 TCIQFNPVDDRYF-ISGSLDAKVRIWSIP--ERQV---VDWNDL---------------HEMVTAACY---------TPD 660 (755)
Q Consensus 611 tsVafsP~dg~~L-aSgS~DgtVrIWDl~--t~~~---v~~~~~---------------~~~Vtsvaf---------SPd 660 (755)
..|+|+| ++++| ++-...+.|+.++.. ++.+ ..+... -.....+++ .++
T Consensus 276 ~~ia~dp-dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~ 354 (433)
T 4hw6_A 276 FHIVWHP-TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE 354 (433)
T ss_dssp EEEEECT-TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC
T ss_pred ccEEEeC-CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC
Confidence 5799999 88844 444556889998865 3321 111110 124678999 677
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeecccccc---cc-----ccccCCCCCeEEEEEc-cCCCeEEEEEECCCcEEEEE
Q 004404 661 GQGALVGSYKGSCHLYNTSENKLQQKSPINL---QN-----KKKRSHQRKITGFQFA-PGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 661 G~~LasGs~DG~I~lwDl~~~~~~~~~~i~~---~~-----~~~~~h~~~Vtsl~fs-Pdg~~~L~sgs~Dg~IrVWD 729 (755)
|.++++-...+.|+.++. ++......-... .. ......-....+|++. +++. ++++-...++|+.++
T Consensus 355 g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 355 YDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDCDNHRVRKIA 430 (433)
T ss_dssp EEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEGGGTEEEEEE
T ss_pred CcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE-EEEEeCCCCEEEEEe
Confidence 766666666788999985 454432211000 00 0001123447788888 4553 444445667777765
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.95 E-value=0.053 Score=64.41 Aligned_cols=238 Identities=9% Similarity=0.024 Sum_probs=123.0
Q ss_pred eeee-cCCCcEEEEeC----CCcEEEEeeCCCC-cccceeeeeEeecccCCEEEEEEcCCCCEEEEEECC-----CcEEE
Q 004404 414 SSAT-DDSQDVSFHGQ----ERVRVRQYGKSCK-DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-----CVIHV 482 (755)
Q Consensus 414 vs~~-~ds~~~l~sg~----~dg~Vriwd~~~~-~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~D-----GtVrV 482 (755)
...+ +|+..+++... ....|+++++.++ +.... .+.. ....+.|+|||+.|+....| ..|.+
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~----~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD----KVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC----CEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc----cccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 3445 67766665433 3356999999887 53211 1111 13468899999988777765 25888
Q ss_pred EeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCC---Cc
Q 004404 483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD---KP 559 (755)
Q Consensus 483 Wdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~---k~ 559 (755)
|++.+++....+... .........+.+++++..|+....... ...+ .++++.. +.
T Consensus 252 ~~lgt~~~~~~lv~~--~~~~~~~~~~~~SpDg~~l~~~~~~~~------~~~l--------------~~~d~~~~~~~~ 309 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYE--EHNPLFSAFMYKAADTNTLCIGSQSPE------TAEV--------------HLLDLRKGNAHN 309 (751)
T ss_dssp EETTSCGGGCEEEEE--CCCTTCEEEEEECTTSSEEEEEEECSS------CEEE--------------EEEESSSCTTCC
T ss_pred EECCCCchhcEEEEe--cCCCceEEEEEECCCCCEEEEEecCCC------CceE--------------EEEECCCCCCCc
Confidence 888766433222111 111123456789999987776532210 0000 1111111 11
Q ss_pred --eEEeccCCCCEEEEEecCCcEEEEEeC-C----CcEEEEECCCC-cEEE-EeecCC--ceEEEEEeeCCCcEEEEEEC
Q 004404 560 --ICSFQGHLDDVLDLSWSKSQHLLSSSM-D----KTVRLWHLSSK-TCLK-IFSHSD--YVTCIQFNPVDDRYFISGSL 628 (755)
Q Consensus 560 --i~~l~gH~~~V~~L~~spd~~LaSgs~-D----gtVrLWDl~t~-~~~~-~~~h~~--~VtsVafsP~dg~~LaSgS~ 628 (755)
.............+.|+..+.|+..+. + ..|.++++.++ .... .+.+.. .+..+.+. .+.++++...
T Consensus 310 ~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~ 387 (751)
T 2xe4_A 310 TLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRR 387 (751)
T ss_dssp CEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEE
T ss_pred eeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEe
Confidence 112223345556677666655554443 3 35777777652 3223 344444 34444443 4456667777
Q ss_pred CCcE--EEEEC-------CCCc-EEEeccCCC--CEEEEEE----ccCCC-EEEEEECC---CcEEEEECCCCee
Q 004404 629 DAKV--RIWSI-------PERQ-VVDWNDLHE--MVTAACY----TPDGQ-GALVGSYK---GSCHLYNTSENKL 683 (755)
Q Consensus 629 DgtV--rIWDl-------~t~~-~v~~~~~~~--~Vtsvaf----SPdG~-~LasGs~D---G~I~lwDl~~~~~ 683 (755)
++.. .++++ .+++ ...+ .... .+..+.+ ++++. ++++.+.. ..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l-~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREV-VMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEEC-CCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEE-CCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 7764 45565 3444 3332 2222 2334433 34664 44443332 4578888877654
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.94 E-value=0.12 Score=57.03 Aligned_cols=246 Identities=10% Similarity=0.067 Sum_probs=129.9
Q ss_pred CEEEEEEcC-CCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCCCc-eeccccCCCceeeeccccc
Q 004404 458 SIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRS 535 (755)
Q Consensus 458 ~I~sI~fSp-dg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~-~l~~~s~d~~i~~~~~~~~ 535 (755)
....|+|+| ++..|+.+...+.|+.+|+..+... .+.. .......+++.+++. ++++....+.+.. .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~-----~~~~P~~ia~d~~G~~lyvad~~~~~~~~-----~ 206 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYS-----GLSKVRTICWTHEADSMIITNDQNNNDRP-----N 206 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEEC-----CCSCEEEEEECTTSSEEEEEECCSCTTSE-----E
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEec-----CCCCcceEEEeCCCCEEEEEeCCCCcccc-----e
Confidence 456789998 4555666655578888988765432 2211 223455677888887 4444332211100 0
Q ss_pred ccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECCCCcEEEEee--cCCceE
Q 004404 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-SQHLLSSS-MDKTVRLWHLSSKTCLKIFS--HSDYVT 611 (755)
Q Consensus 536 ~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp-d~~LaSgs-~DgtVrLWDl~t~~~~~~~~--h~~~Vt 611 (755)
+ ..+..+..+ .....+. .......++++| ++.|+.+. ..+.|+.++...+.....+. ......
T Consensus 207 v--~~~~~~g~~----------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~ 273 (430)
T 3tc9_A 207 N--YILTRESGF----------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEF 273 (430)
T ss_dssp E--EEEEGGGTS----------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCE
T ss_pred E--EEEeCCCce----------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcce
Confidence 0 000000000 0001111 122356788999 56665554 56889999998766533333 234578
Q ss_pred EEEEeeCCCcE-EEEEECCCcEEEEECCC--CcE---EEeccC---------------CCCEE-EEEEc--------cCC
Q 004404 612 CIQFNPVDDRY-FISGSLDAKVRIWSIPE--RQV---VDWNDL---------------HEMVT-AACYT--------PDG 661 (755)
Q Consensus 612 sVafsP~dg~~-LaSgS~DgtVrIWDl~t--~~~---v~~~~~---------------~~~Vt-svafS--------PdG 661 (755)
.|+|+| ++++ +++-...+.|..++... +.. ..+... -.... .++.. ++|
T Consensus 274 gia~~p-dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g 352 (430)
T 3tc9_A 274 HIQFHP-SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY 352 (430)
T ss_dssp EEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE
T ss_pred eEEEcC-CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC
Confidence 999999 8884 45555678899987653 221 111110 01233 45553 345
Q ss_pred CEEEEEECCCcEEEEECCCCeeeeccccc---ccc-----ccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 662 QGALVGSYKGSCHLYNTSENKLQQKSPIN---LQN-----KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 662 ~~LasGs~DG~I~lwDl~~~~~~~~~~i~---~~~-----~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.+.++=...+.|+.++. ++......... ... ......-....+|++.|++..++++-....+|+.++
T Consensus 353 ~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 353 DFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp EEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred eEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 55555455678888884 45443322100 000 000112235789999985333444445667788776
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.89 E-value=0.042 Score=58.44 Aligned_cols=163 Identities=9% Similarity=0.137 Sum_probs=110.3
Q ss_pred ccCCCCEEEEEecCC-cEEEEEe-CCCcEEEEECCCCcEEEE-eec-------CCceEEEEE---eeCCCcEEEEEE---
Q 004404 564 QGHLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKI-FSH-------SDYVTCIQF---NPVDDRYFISGS--- 627 (755)
Q Consensus 564 ~gH~~~V~~L~~spd-~~LaSgs-~DgtVrLWDl~t~~~~~~-~~h-------~~~VtsVaf---sP~dg~~LaSgS--- 627 (755)
.....-.-++.|.+. +.|+.++ ..++|..|+...+....+ +.. ...+..|.| .| +++++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~ 87 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAK 87 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccc
Confidence 333344557889874 7777777 689999999986654444 222 114689999 68 677777543
Q ss_pred ----------CCCcEEEEECC---CCcEEEeccC--------------CCCEEEEEEccCCCEEEEEECC-CcEEEEECC
Q 004404 628 ----------LDAKVRIWSIP---ERQVVDWNDL--------------HEMVTAACYTPDGQGALVGSYK-GSCHLYNTS 679 (755)
Q Consensus 628 ----------~DgtVrIWDl~---t~~~v~~~~~--------------~~~VtsvafSPdG~~LasGs~D-G~I~lwDl~ 679 (755)
.+..|..||+. +++.+..... ......++..++|+..++++.. +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 26779999999 7766533322 1258899999999999999888 888888877
Q ss_pred CCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEECCc
Q 004404 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (755)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD~~~ 732 (755)
...... +-... .........++|+++|+|. .|++....+.|..+|...
T Consensus 168 G~~~~~-~~~~~---~~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GKTVST-FAWES---GNGGQRPGYSGITFDPHSN-KLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCCEEE-EEECC---CCSSSCCSCSEEEEETTTT-EEEEESSSSSEEEEECSS
T ss_pred CCEEee-eeecC---CCcccccCcceEEEeCCCC-EEEEEcCCCeEEEEcCCC
Confidence 553321 11111 1112234578999999998 566664599999999433
No 288
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.82 E-value=0.62 Score=57.96 Aligned_cols=277 Identities=13% Similarity=0.076 Sum_probs=141.6
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCC------CCEEEEEEC-CCcEEEEeCcCCceeeeeecccccCc
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD------GRYLASAGE-DCVIHVWQVVESERKGELLEKQEDGH 502 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpd------g~~LaTgs~-DGtVrVWdl~t~~~~~~l~~~~~~~~ 502 (755)
.+.+..+.+..+++.... ..+ -...|.|+++.|. ++++|.|.. |++|+|+++.+.+......... ...
T Consensus 531 g~~l~~fel~~~~L~~~~-~~~---l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~ 605 (1158)
T 3ei3_A 531 GRALYYLQIHPQELRQIS-HTE---MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EII 605 (1158)
T ss_dssp TTEEEEEEEETTEEEEEE-EEE---CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCC
T ss_pred CCEEEEEEeeCCceeeec-ccC---CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCC
Confidence 456666665544332211 122 2467999999863 369999997 9999999998655443321110 111
Q ss_pred cccEEEeecCCCCceeccccCCCceeeecccc----------------cccccccccCcccccceeeecCCCceEEecc-
Q 004404 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR----------------SINRKSLSLDHMVVPETVFALSDKPICSFQG- 565 (755)
Q Consensus 503 ~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~----------------~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~g- 565 (755)
...+..+.+ ....++..+..++.+....... ......+.... ...++....++...+..
T Consensus 606 p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~---~~~V~a~s~rp~liy~~~ 681 (1158)
T 3ei3_A 606 PRSILMTTF-ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLS---TTNVFACSDRPTVIYSSN 681 (1158)
T ss_dssp EEEEEEEEE-TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSS---CEEEEEESSSCEEEEESS
T ss_pred CcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCC---ceeEEEECCCCEEEEEcC
Confidence 222222222 1223333443444332221110 00000000000 01223333333222211
Q ss_pred --------CCCCEEE-EEecCC---cEEEEEeCCCcEEEEECCCC--cEEEEeecCCceEEEEEeeCCCcEEEEEECC--
Q 004404 566 --------HLDDVLD-LSWSKS---QHLLSSSMDKTVRLWHLSSK--TCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-- 629 (755)
Q Consensus 566 --------H~~~V~~-L~~spd---~~LaSgs~DgtVrLWDl~t~--~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D-- 629 (755)
....+.. ..|+.. +-++. ..++.++|..+..- -.++.+.-...+..++++| ..+.++.+..+
T Consensus 682 ~~l~~s~l~~~~v~~~~~F~se~~~~g~v~-~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~-~~~~~~v~~~~~~ 759 (1158)
T 3ei3_A 682 HKLVFSNVNLKEVNYMCPLNSDGYPDSLAL-ANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQE-VSQCFGVLSSRIE 759 (1158)
T ss_dssp SSEEEEEBSSSCCCEEEEECCSSSTTEEEE-ECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEG-GGTEEEEEEEEEE
T ss_pred CceEEeccChHHhceEeccCcccCCCcEEE-EcCCceEEEEecccCCeeEEEEeCCCCceEEEEcC-CCCEEEEEEEecc
Confidence 1112222 234332 22333 33456999887543 3445556677889999998 55554433211
Q ss_pred -----------------------------------------------CcEEEEECCCCcEEEeccC--CCCEEEEEE---
Q 004404 630 -----------------------------------------------AKVRIWSIPERQVVDWNDL--HEMVTAACY--- 657 (755)
Q Consensus 630 -----------------------------------------------gtVrIWDl~t~~~v~~~~~--~~~Vtsvaf--- 657 (755)
..|++.|-.+.+.+..+.. .+.+.+++.
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~ 839 (1158)
T 3ei3_A 760 VQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKL 839 (1158)
T ss_dssp EECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECC
T ss_pred ccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEE
Confidence 2367777777776644433 345555553
Q ss_pred ccC-CCEEEEEE----------CCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEE
Q 004404 658 TPD-GQGALVGS----------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (755)
Q Consensus 658 SPd-G~~LasGs----------~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~Ir 726 (755)
..+ ..+|++|+ ..|.|++|++..+++..... ....++|++++-.. | +|++|- ..+|+
T Consensus 840 ~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~--------~~v~g~v~al~~~~-g--~Lla~i-g~~l~ 907 (1158)
T 3ei3_A 840 GKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE--------KEVKGAVYSMVEFN-G--KLLASI-NSTVR 907 (1158)
T ss_dssp TTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE--------EEESSCEEEEEEET-T--EEEEEE-TTEEE
T ss_pred ccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE--------EEcCCcCEEEeeeC-C--EEEEEc-CCEEE
Confidence 222 47899987 35889999998655443221 23467888887543 3 455554 47899
Q ss_pred EEE
Q 004404 727 VVD 729 (755)
Q Consensus 727 VWD 729 (755)
||+
T Consensus 908 vy~ 910 (1158)
T 3ei3_A 908 LYE 910 (1158)
T ss_dssp EEE
T ss_pred EEE
Confidence 999
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.77 E-value=0.23 Score=59.30 Aligned_cols=158 Identities=10% Similarity=0.009 Sum_probs=103.3
Q ss_pred eccCCCCEEEEEecCC-cEEE-EEeCCCcEEEEECCCC----cEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEE
Q 004404 563 FQGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLSSK----TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (755)
Q Consensus 563 l~gH~~~V~~L~~spd-~~La-Sgs~DgtVrLWDl~t~----~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIW 635 (755)
+......+..|+|.+. +.|+ +-...+.|+.+++... .....+. .-.....|++.+..++++++-...+.|.+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 3334556788999874 5544 5455688999998753 2233333 445677899988444666666778899999
Q ss_pred ECCCCcEEEecc-CCCCEEEEEEccCCCEEEEEEC--CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 636 SIPERQVVDWND-LHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 636 Dl~t~~~v~~~~-~~~~VtsvafSPdG~~LasGs~--DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
++.......+.. .-.....|++.|.+.+|+.... .+.|...++.......... ......++|++.+.+
T Consensus 499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~---------~~l~~P~GLavD~~~ 569 (791)
T 3m0c_C 499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---------ENIQWPNGITLDLLS 569 (791)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC---------SSCSCEEEEEEETTT
T ss_pred eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe---------CCCCCceEEEEecCC
Confidence 998765544432 3356899999998667776653 2679998887654433211 233568899999877
Q ss_pred CeEEEEEECCCcEEEEE
Q 004404 713 SSEVLVTSADSRIRVVD 729 (755)
Q Consensus 713 ~~~L~sgs~Dg~IrVWD 729 (755)
..++++-....+|..++
T Consensus 570 ~~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 570 GRLYWVDSKLHSISSID 586 (791)
T ss_dssp TEEEEEETTTTEEEEEE
T ss_pred CeEEEEeCCCCcEEEEe
Confidence 63444445667898888
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.74 E-value=0.016 Score=64.31 Aligned_cols=153 Identities=7% Similarity=0.047 Sum_probs=97.2
Q ss_pred CEEEEEecCC---cEEEEEeCCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC---Cc-EEEEECCCCc
Q 004404 569 DVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD---AK-VRIWSIPERQ 641 (755)
Q Consensus 569 ~V~~L~~spd---~~LaSgs~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D---gt-VrIWDl~t~~ 641 (755)
....|+|.|+ +.|+.+...+.|+.+|..++..............|+|++ +++++++.... .. +..++...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence 3568899983 777777666899999998887766666666789999999 88854444321 12 3333322211
Q ss_pred E-EEeccCCCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 642 V-VDWNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 642 ~-v~~~~~~~~VtsvafSP-dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
. ......-.....++++| +|.+.++-..++.|+.++..++.....+. . .+....-..++|+|++..++++-
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~------~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-M------MDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-E------CSCCSSCEEEEECTTSSEEEEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-c------cCCCCCcccEEEeCCCCEEEEEe
Confidence 1 01111234456789999 66655555567889999998776522111 0 01122335799999998445555
Q ss_pred ECCCcEEEEE
Q 004404 720 SADSRIRVVD 729 (755)
Q Consensus 720 s~Dg~IrVWD 729 (755)
...++|+.++
T Consensus 292 ~~~~~I~~~~ 301 (433)
T 4hw6_A 292 NGKHCIYRVD 301 (433)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEEe
Confidence 6678999977
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.62 E-value=0.29 Score=51.66 Aligned_cols=152 Identities=7% Similarity=-0.017 Sum_probs=100.6
Q ss_pred CEEEEEecCC-cEE-EEEeCCCcEEEEECCCCcEE-EEe-ecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE
Q 004404 569 DVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCL-KIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (755)
Q Consensus 569 ~V~~L~~spd-~~L-aSgs~DgtVrLWDl~t~~~~-~~~-~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~ 644 (755)
.+..|.|.+. +.| ++-...+.|+.+++...... ..+ ..-.....+++.+.++.++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 4678899874 554 45556788999998765321 122 2334567889987455666666677899999987654333
Q ss_pred ec-cCCCCEEEEEEccCCCEEEEEEC--CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 645 WN-DLHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 645 ~~-~~~~~VtsvafSPdG~~LasGs~--DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
+. ........+++.|.+..|+.... .+.|+.+++.......... ..-...++|+|+|++..++++-+.
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~---------~~l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN---------SEIYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC---------SSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE---------CCCCCccEEEEeccCCEEEEEECC
Confidence 32 34457899999997667776653 5788888887543222110 123456899999977745555566
Q ss_pred CCcEEEEE
Q 004404 722 DSRIRVVD 729 (755)
Q Consensus 722 Dg~IrVWD 729 (755)
.++|..+|
T Consensus 187 ~~~I~~~d 194 (318)
T 3sov_A 187 LNFIHKSN 194 (318)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEc
Confidence 78899998
No 292
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.54 E-value=0.39 Score=51.34 Aligned_cols=237 Identities=12% Similarity=0.078 Sum_probs=111.2
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecc-cccCccccEEEeecCCC----CceeccccCC-----Cc
Q 004404 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK-QEDGHLNMLLLANGSPE----PTSLSPKHLD-----NH 526 (755)
Q Consensus 457 ~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~-~~~~~~~~v~~v~~s~d----g~~l~~~s~d-----~~ 526 (755)
...+.|+|.|+|+++++ ..+|.|++++ .++. ..+... ...........++++|+ +.++++.... ..
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 45689999999995555 5679999998 3321 111110 01111334566777877 4444433211 11
Q ss_pred eeeecccccccccccccCcccccceeeecCCCceEEec---cCCCCEEEEEecCCcEEEEEeCC--------------Cc
Q 004404 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ---GHLDDVLDLSWSKSQHLLSSSMD--------------KT 589 (755)
Q Consensus 527 i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~---gH~~~V~~L~~spd~~LaSgs~D--------------gt 589 (755)
+.... ...........+ +..+. +.......|+|.|++.|+.+..+ +.
T Consensus 107 v~r~~---------~~~~~~~~~~~l-------~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~ 170 (352)
T 2ism_A 107 VVRLR---------HLGERGVLDRVV-------LDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGK 170 (352)
T ss_dssp EEEEE---------ECSSCEEEEEEE-------EEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSE
T ss_pred EEEEE---------eCCCCcCceEEE-------EEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceE
Confidence 11111 000000000011 11122 11112357999999776665432 45
Q ss_pred EEEEECCC--------------CcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcE------EEEECCCCc--------
Q 004404 590 VRLWHLSS--------------KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKV------RIWSIPERQ-------- 641 (755)
Q Consensus 590 VrLWDl~t--------------~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtV------rIWDl~t~~-------- 641 (755)
|.-++... ...+....+ .....++|+|.++.++++-.....+ .|.-+..+.
T Consensus 171 I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~ 249 (352)
T 2ism_A 171 ILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVV 249 (352)
T ss_dssp EEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCC
T ss_pred EEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCccc
Confidence 65565542 111222222 3357789998445555543333321 122222221
Q ss_pred ----------EEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccC
Q 004404 642 ----------VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (755)
Q Consensus 642 ----------~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPd 711 (755)
++.....+.....++| .+|.++++.-..+.|...++.......... .. ..+......+..+++.|+
T Consensus 250 g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~-~~--~~~~~~~~rp~~v~~~pd 325 (352)
T 2ism_A 250 GRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVL-RV--ETALSGFGRLREVQVGPD 325 (352)
T ss_dssp SCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEE-EE--EEEEESSCCEEEEEECTT
T ss_pred CCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeec-ch--heecccCCCeeEEEECCC
Confidence 1112233345677888 467665555556677777765432110000 00 000012357899999999
Q ss_pred CCeEEEEE
Q 004404 712 SSSEVLVT 719 (755)
Q Consensus 712 g~~~L~sg 719 (755)
|. ++++.
T Consensus 326 G~-lyv~~ 332 (352)
T 2ism_A 326 GA-LYVTT 332 (352)
T ss_dssp SC-EEEEE
T ss_pred Cc-EEEEE
Confidence 97 44443
No 293
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.44 E-value=0.029 Score=65.49 Aligned_cols=239 Identities=10% Similarity=-0.021 Sum_probs=119.4
Q ss_pred EEEEcC-CCCEEEEEECCC-----------cEEEEeCcCCceeeeeecccccCccccEEEeecCCCCceeccccCCC-ce
Q 004404 461 SIKFSL-DGRYLASAGEDC-----------VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HL 527 (755)
Q Consensus 461 sI~fSp-dg~~LaTgs~DG-----------tVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~-~i 527 (755)
++++.+ ++++++.|+.+. .+.+||..+++-..... . ...+...........++.+++.+.... .+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~-~-~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV-T-VTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE-E-ECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc-c-CCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 556677 888899888653 58899988765322111 0 111112222344556777777765432 11
Q ss_pred eeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEEEEe-CC-----CcEEEEECCCCcE
Q 004404 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSS-MD-----KTVRLWHLSSKTC 600 (755)
Q Consensus 528 ~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~LaSgs-~D-----gtVrLWDl~t~~~ 600 (755)
....... ..|... ..+...... ..++..++ ..++.|+ .+ ..+.+||..+.+-
T Consensus 268 ~~yd~~t----------------~~W~~~----~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 268 SLYDSSS----------------DSWIPG----PDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEEEGGG----------------TEEEEC----CCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred EEecCcC----------------CceeEC----CCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 1111100 011110 011111111 23344444 6677777 34 5799999988765
Q ss_pred EEEe-----ecCCceEEEEEeeCCCcEEEEEECC---------CcEEEEECCCCcEEEeccC----------CCCEEEEE
Q 004404 601 LKIF-----SHSDYVTCIQFNPVDDRYFISGSLD---------AKVRIWSIPERQVVDWNDL----------HEMVTAAC 656 (755)
Q Consensus 601 ~~~~-----~h~~~VtsVafsP~dg~~LaSgS~D---------gtVrIWDl~t~~~v~~~~~----------~~~Vtsva 656 (755)
...- .....-....+.. ++..++.|+.+ ..+..||..+......... ...-.++.
T Consensus 327 ~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 327 TSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 4431 0000000011112 44555555444 3567888877653321111 11234555
Q ss_pred Ecc-CCCEEEEEECCC-----------cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC--
Q 004404 657 YTP-DGQGALVGSYKG-----------SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-- 722 (755)
Q Consensus 657 fSP-dG~~LasGs~DG-----------~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D-- 722 (755)
|.. +++++++|+.++ .|.+||..+..-.....-. + .....-.++...|++. +++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-----m-p~~R~~~~~~~l~~g~-i~v~GG~~~~ 478 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG-----L-YFARTFHTSVVLPDGS-TFITGGQRRG 478 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC-----C-SSCCBSCEEEECTTSC-EEEECCBSBC
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCC-----C-CCCcccCCeEECCCCC-EEEECCcccC
Confidence 544 778888887543 6788888776544321000 0 1111223445678887 77777754
Q ss_pred ---------CcEEEEEC
Q 004404 723 ---------SRIRVVDG 730 (755)
Q Consensus 723 ---------g~IrVWD~ 730 (755)
..+.+||.
T Consensus 479 ~~~~~~~~~~~v~~ydp 495 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVP 495 (656)
T ss_dssp CTTCCCSBCCCCEEEEG
T ss_pred cCcCCCCcccceEEEcC
Confidence 46899993
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.44 E-value=1.8 Score=50.20 Aligned_cols=221 Identities=8% Similarity=-0.048 Sum_probs=122.2
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEE-EEECCCcEEEEeCcCCceeeeeecccccCccccEE
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~La-Tgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~ 507 (755)
....|+..++...+...... + ..-..+.+|+|.+.+..|+ +-..++.|..+++...... .+.. .+ .....
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~---~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-~v~~---~g-~~~P~ 83 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIP---L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-HVVE---FG-LDYPE 83 (628)
T ss_dssp ETTEEEEEESSCTTCEEECC---C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEC---SS-CSCCC
T ss_pred eCCcEEEEECCCCCcceEEE---c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE-EEEe---CC-CCCcc
Confidence 56777888887544322221 1 2234688999999655544 5556788988887643322 2211 11 01111
Q ss_pred EeecCCC-CceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEec-cCCCCEEEEEecCC-cEEEEE
Q 004404 508 LANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHLLSS 584 (755)
Q Consensus 508 ~v~~s~d-g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~-gH~~~V~~L~~spd-~~LaSg 584 (755)
.++..+. +.++.+......+ .+..+.+.....+. ........|++.|. +.|+..
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I-----------------------~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRI-----------------------EVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT 140 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEE-----------------------EEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred eEEEEeCCCEEEEEECCCCEE-----------------------EEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence 2222222 2222222222222 12222222222221 33345789999985 777766
Q ss_pred eC--CCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEE-ECCCcEEEEECCCCcEEEeccCCCCEEEEEEccCC
Q 004404 585 SM--DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG-SLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG 661 (755)
Q Consensus 585 s~--DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSg-S~DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG 661 (755)
.. .+.|...++...........-...+.|++++ ++..|+.+ ...+.|..+|+.......+...-.....+++.. +
T Consensus 141 D~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~-~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~ 218 (628)
T 4a0p_A 141 EWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDY-AKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-D 218 (628)
T ss_dssp ECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-T
T ss_pred CCCCCCEEEEEeCCCCceEEEECCCCCcceEEEcc-ccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-C
Confidence 53 4678888877554444444556789999999 55555444 556789999987644332222334566788764 3
Q ss_pred CEEEEEE-CCCcEEEEECCCCeee
Q 004404 662 QGALVGS-YKGSCHLYNTSENKLQ 684 (755)
Q Consensus 662 ~~LasGs-~DG~I~lwDl~~~~~~ 684 (755)
.|+... ..+.|...|..+++..
T Consensus 219 -~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 219 -YIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp -EEEEEETTTTEEEEEETTTCCSC
T ss_pred -EEEEecCCCCEEEEEECCCCCce
Confidence 555544 4788999997776543
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.42 E-value=0.39 Score=50.95 Aligned_cols=93 Identities=9% Similarity=0.046 Sum_probs=69.8
Q ss_pred CCcEEEEECC---CCcEEEEeec-------------C-CceEEEEEeeCCCcEEEEEECC-CcEEEEECCCCcEEEeccC
Q 004404 587 DKTVRLWHLS---SKTCLKIFSH-------------S-DYVTCIQFNPVDDRYFISGSLD-AKVRIWSIPERQVVDWNDL 648 (755)
Q Consensus 587 DgtVrLWDl~---t~~~~~~~~h-------------~-~~VtsVafsP~dg~~LaSgS~D-gtVrIWDl~t~~~v~~~~~ 648 (755)
+..|..||+. +++.+..... . ...+.++..+ +|+..++++.- +.|..++........+...
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGKTVSTFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeec
Confidence 5778899998 7766655531 1 2488999999 89999999888 8888888765544433211
Q ss_pred C------CCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 004404 649 H------EMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (755)
Q Consensus 649 ~------~~VtsvafSPdG~~LasGs~DG~I~lwDl~~ 680 (755)
. ...+.|+++|+|+.|++....|.|..+|+..
T Consensus 178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 1 2367999999999999987799999999983
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.35 E-value=0.019 Score=67.70 Aligned_cols=120 Identities=5% Similarity=-0.061 Sum_probs=72.8
Q ss_pred CCEEEEEecCC-cEEEEEeC--CCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE
Q 004404 568 DDVLDLSWSKS-QHLLSSSM--DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (755)
Q Consensus 568 ~~V~~L~~spd-~~LaSgs~--DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v 643 (755)
.....|++.|. ++|+.+.. .+.|.++++........+. .-...+.|+|+|..+.++++-...+.|.++++......
T Consensus 496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~ 575 (699)
T 1n7d_A 496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 575 (699)
T ss_dssp CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE
T ss_pred CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE
Confidence 34567888885 55554443 2678877765432222222 23456789999844555566666788999998754433
Q ss_pred EeccC---CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccc
Q 004404 644 DWNDL---HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 644 ~~~~~---~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
.+... ......|++..+ .++++....+.|..++..+++.+..+.
T Consensus 576 ~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 576 TILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 33321 133455666543 344445556889999998887766543
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.29 E-value=2.2 Score=49.35 Aligned_cols=158 Identities=5% Similarity=-0.056 Sum_probs=100.3
Q ss_pred CEEEEEecCC-c-EEEEEeCCCcEEEEECCCCcEEEEe-ecCCceEEEEEeeCCCcEEEEEEC--CCcEEEEECCCCcEE
Q 004404 569 DVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL--DAKVRIWSIPERQVV 643 (755)
Q Consensus 569 ~V~~L~~spd-~-~LaSgs~DgtVrLWDl~t~~~~~~~-~h~~~VtsVafsP~dg~~LaSgS~--DgtVrIWDl~t~~~v 643 (755)
....|++.+. + .+++-...+.|.+.++........+ ..-.....|++.| ...+|+.... .+.|...++......
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp-~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDP-AEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEcc-CCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 4556776643 4 4555556788999998755433333 3445678999999 4444544442 567888888766554
Q ss_pred EeccCCCCEEEEEEccCCCEEEEEEC-CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC
Q 004404 644 DWNDLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (755)
Q Consensus 644 ~~~~~~~~VtsvafSPdG~~LasGs~-DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D 722 (755)
.+...-.....|++++++..|+.+.. .+.|..+|+...... .+. .......++++..+ .++++-...
T Consensus 160 ~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~-v~~---------~~l~~P~glav~~~--~ly~tD~~~ 227 (628)
T 4a0p_A 160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE-VIA---------DDLPHPFGLTQYQD--YIYWTDWSR 227 (628)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE---------ECCSCEEEEEEETT--EEEEEETTT
T ss_pred EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE-Eee---------ccCCCceEEEEECC--EEEEecCCC
Confidence 44445568899999998777777654 578999999765432 111 22334567777653 244444557
Q ss_pred CcEEEEE--CCcceEEeec
Q 004404 723 SRIRVVD--GIDLVHKFKG 739 (755)
Q Consensus 723 g~IrVWD--~~~ll~~~~G 739 (755)
+.|...| +++....+..
T Consensus 228 ~~I~~~dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 228 RSIERANKTSGQNRTIIQG 246 (628)
T ss_dssp TEEEEEETTTCCSCEEEEC
T ss_pred CEEEEEECCCCCceEEEec
Confidence 8899998 4544444443
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.97 E-value=0.13 Score=57.82 Aligned_cols=160 Identities=13% Similarity=0.050 Sum_probs=96.1
Q ss_pred CEEEEEecCC--cEEEEEeC-CCcEEEEECCCCcEEEEeec----CCceEEEEE-------eeCCCcEEEEEECCC----
Q 004404 569 DVLDLSWSKS--QHLLSSSM-DKTVRLWHLSSKTCLKIFSH----SDYVTCIQF-------NPVDDRYFISGSLDA---- 630 (755)
Q Consensus 569 ~V~~L~~spd--~~LaSgs~-DgtVrLWDl~t~~~~~~~~h----~~~VtsVaf-------sP~dg~~LaSgS~Dg---- 630 (755)
....|+|.|. +.|+.+.. .+.|++.|+..+........ ......|+| ++ ++++|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 4678999983 55555554 46799999888777665542 235899999 99 888666666554
Q ss_pred ---cEEEEECCC-CcEE-----EeccCCCCEEEEEEccCCCE-EEEEECCCcEEEEECC-------CCeeeec-cccc--
Q 004404 631 ---KVRIWSIPE-RQVV-----DWNDLHEMVTAACYTPDGQG-ALVGSYKGSCHLYNTS-------ENKLQQK-SPIN-- 690 (755)
Q Consensus 631 ---tVrIWDl~t-~~~v-----~~~~~~~~VtsvafSPdG~~-LasGs~DG~I~lwDl~-------~~~~~~~-~~i~-- 690 (755)
.|.+++... +... .....-.....++++|++.. +++-..++.|+.||+. ++..-.. .+..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665433 1211 11111124457889995544 4455567789999997 5544000 0000
Q ss_pred -cccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 691 -LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 691 -~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+...-..+.......|+|+|+|..++++-+..++|+.++
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 000000122345689999999984455556788999966
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.86 E-value=1.3 Score=49.61 Aligned_cols=256 Identities=9% Similarity=0.019 Sum_probs=130.9
Q ss_pred CEEEEEEcCC-CC-EEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeec-------CCCCc-eeccccCCCce
Q 004404 458 SIWSIKFSLD-GR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG-------SPEPT-SLSPKHLDNHL 527 (755)
Q Consensus 458 ~I~sI~fSpd-g~-~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~-------s~dg~-~l~~~s~d~~i 527 (755)
....|+|.|. .. ++++....+.|++.|+.++.... +... ..........+++ .+++. ++++...++..
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~-~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNI-NTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECC-TTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEcc-CccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 4678999983 44 44444444678888877655433 2211 1123344667777 88876 44444332110
Q ss_pred eeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC-cEEE-EEeCCCcEEEEECC-------CC
Q 004404 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLS-------SK 598 (755)
Q Consensus 528 ~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd-~~La-Sgs~DgtVrLWDl~-------t~ 598 (755)
.....+.......+..+.. ......+..+. ....++.+|+ +.|+ +-..++.|..+|+. ++
T Consensus 218 ---~~~~~V~~i~r~~~G~~~~----~~~~~~v~~~~----~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 218 ---DESPSVYIIKRNADGTFDD----RSDIQLIAAYK----QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp ---GGEEEEEEEECCTTSCCST----TSCEEEEEEES----CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred ---ccCceEEEEecCCCCceee----cccceeeccCC----CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence 0000000000000000000 00001112222 3456788884 5544 55567889999987 45
Q ss_pred cE-----------E-EEee--cCCceEEEEEeeCCCcEE-EEEECCCcEEEEEC--CCCcE---EEecc---CC------
Q 004404 599 TC-----------L-KIFS--HSDYVTCIQFNPVDDRYF-ISGSLDAKVRIWSI--PERQV---VDWND---LH------ 649 (755)
Q Consensus 599 ~~-----------~-~~~~--h~~~VtsVafsP~dg~~L-aSgS~DgtVrIWDl--~t~~~---v~~~~---~~------ 649 (755)
.. . ..+. .......|+|+| ++++| ++-+....|+.++. .++.+ ..+.. ..
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~ 365 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDV 365 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCB
T ss_pred eeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCc
Confidence 43 2 2222 345568999999 88854 44456678888654 33322 11111 11
Q ss_pred ------CCEE-EEEEc-------cCCCEEEEEECCCcEEEEECCCCeeeecccccc-------------cc-ccccCCCC
Q 004404 650 ------EMVT-AACYT-------PDGQGALVGSYKGSCHLYNTSENKLQQKSPINL-------------QN-KKKRSHQR 701 (755)
Q Consensus 650 ------~~Vt-svafS-------PdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~-------------~~-~~~~~h~~ 701 (755)
.... .++.. ++|.++++=..+.+|+.++. ++......-.-. .. ......-.
T Consensus 366 ~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~ 444 (496)
T 3kya_A 366 GTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFR 444 (496)
T ss_dssp GGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCS
T ss_pred ccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcC
Confidence 1345 45554 55666666566788999984 454332111000 00 00112234
Q ss_pred CeEEEEEccC-CCeEEEEEECCCcEEEEE
Q 004404 702 KITGFQFAPG-SSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 702 ~Vtsl~fsPd-g~~~L~sgs~Dg~IrVWD 729 (755)
...+|++.++ +. ++++=....+||.++
T Consensus 445 ~P~gIavd~~~g~-lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 445 DVSGLVYDDVKEM-FYVHDQVGHTIRTIS 472 (496)
T ss_dssp SEEEEEEETTTTE-EEEEETTTTEEEEEE
T ss_pred CCcEEEEECCCCE-EEEEeCCCCEEEEEE
Confidence 5789999996 53 455556778999998
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.77 E-value=2.6 Score=44.93 Aligned_cols=234 Identities=12% Similarity=0.027 Sum_probs=115.0
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeeccc-ccCccccEEEeecCCC----CceeccccC---C---
Q 004404 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ-EDGHLNMLLLANGSPE----PTSLSPKHL---D--- 524 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~-~~~~~~~v~~v~~s~d----g~~l~~~s~---d--- 524 (755)
-...+.|+|.|+|+++++ ..+|.|++++. .++ ..+.... ..........+++.|+ +.++++... +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 345789999999985554 56699999973 333 2221100 0111234566777776 444444321 1
Q ss_pred -CceeeecccccccccccccCcccccceeeecCCCceEEec---cCCCCEEEEEecCCcEEEEEeCC-------------
Q 004404 525 -NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ---GHLDDVLDLSWSKSQHLLSSSMD------------- 587 (755)
Q Consensus 525 -~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~---gH~~~V~~L~~spd~~LaSgs~D------------- 587 (755)
..+......... ........++ ..+. .|. ...|+|.|++.|+.+..|
T Consensus 104 ~~~v~r~~~~~~~-------~~~~~~~~l~-------~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 104 RNRVIRGRLDGST-------FKLKEVKTLI-------DGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEEECSSS-------CCEEEEEEEE-------EEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCC
T ss_pred ceEEEEEEECCCC-------cCcCccEEEE-------EcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCC
Confidence 111111100000 0000000111 1111 232 457899999776665432
Q ss_pred -CcEEEEECCCC---------cEEEEeecCCceEEEEEeeCCCcEEEEEECCC---cEEEEECCCCc-------------
Q 004404 588 -KTVRLWHLSSK---------TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA---KVRIWSIPERQ------------- 641 (755)
Q Consensus 588 -gtVrLWDl~t~---------~~~~~~~h~~~VtsVafsP~dg~~LaSgS~Dg---tVrIWDl~t~~------------- 641 (755)
+.|.-++.... ..+....+. ....|+|+|.++.++++-.... .|.+.. .+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~ 244 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGR 244 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCC
Confidence 45555554421 122233333 3468999984455444432221 133322 111
Q ss_pred -----EEEec-cCCCCEEEEEEc-------cCCCEEEEEECCCcEEEEECCCC-eeeeccccccccccccCCCCCeEEEE
Q 004404 642 -----VVDWN-DLHEMVTAACYT-------PDGQGALVGSYKGSCHLYNTSEN-KLQQKSPINLQNKKKRSHQRKITGFQ 707 (755)
Q Consensus 642 -----~v~~~-~~~~~VtsvafS-------PdG~~LasGs~DG~I~lwDl~~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (755)
++... ..+..+..++|. .+|.++++.-..+.|...++... .......+ +.+....+..++
T Consensus 245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~------~~~~~~rp~~v~ 318 (354)
T 3a9g_A 245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF------FKNVFGRLRDVV 318 (354)
T ss_dssp TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE------CTTTSCCEEEEE
T ss_pred CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee------ccCCCCCeeEEE
Confidence 11112 234567888883 56766666666778888888753 22111110 112245789999
Q ss_pred EccCCCeEEEEE
Q 004404 708 FAPGSSSEVLVT 719 (755)
Q Consensus 708 fsPdg~~~L~sg 719 (755)
+.|+|. ++++.
T Consensus 319 ~~pDG~-lyv~~ 329 (354)
T 3a9g_A 319 IDDDGG-ILIST 329 (354)
T ss_dssp ECTTSC-EEEEE
T ss_pred ECCCCc-EEEEE
Confidence 999996 44444
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.70 E-value=0.94 Score=48.29 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=40.0
Q ss_pred cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc-------EEEeccCCCCEEEEEEccCCCEEEEEE
Q 004404 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-------VVDWNDLHEMVTAACYTPDGQGALVGS 668 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~-------~v~~~~~~~~VtsvafSPdG~~LasGs 668 (755)
+......++|. ++.++++.-..+.|...++.... ...+......+..+++.|||.++++..
T Consensus 266 ~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 QGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 33456788883 67777776667778877775432 123333346789999999997666643
No 302
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.60 E-value=2.1 Score=45.61 Aligned_cols=59 Identities=8% Similarity=0.125 Sum_probs=38.5
Q ss_pred CCCEEEEEEcc-------CCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCC
Q 004404 649 HEMVTAACYTP-------DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (755)
Q Consensus 649 ~~~VtsvafSP-------dG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~ 713 (755)
+..+..++|.. +|+++++.-..+.|...++..++......+ +......+..|++.|+|.
T Consensus 270 ~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 270 SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI------LTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE------SGGGCCCEEEEEECTTSC
T ss_pred CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc------ccCCCCceeEEEECCCCc
Confidence 34677788864 466666666677888888876544322111 112345799999999997
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.36 E-value=0.98 Score=48.49 Aligned_cols=148 Identities=12% Similarity=0.060 Sum_probs=91.2
Q ss_pred CEEEEEecCCcEEEEEe-------------CCCcEEEEECCC--CcEEEEeec--------CCceEEEEEeeC-CCc--E
Q 004404 569 DVLDLSWSKSQHLLSSS-------------MDKTVRLWHLSS--KTCLKIFSH--------SDYVTCIQFNPV-DDR--Y 622 (755)
Q Consensus 569 ~V~~L~~spd~~LaSgs-------------~DgtVrLWDl~t--~~~~~~~~h--------~~~VtsVafsP~-dg~--~ 622 (755)
..-+|...|++.+++++ .+|.|.++|..+ .+. ..+.. .-....|.+.+. ++. +
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 45567778888877776 689999999874 232 23321 236778888662 232 4
Q ss_pred EEEEEC--CCcEEEEECCCC--cEE--EeccCC--CCEEEEEEccCCCEEEEEEC-----------------CCcEEEEE
Q 004404 623 FISGSL--DAKVRIWSIPER--QVV--DWNDLH--EMVTAACYTPDGQGALVGSY-----------------KGSCHLYN 677 (755)
Q Consensus 623 LaSgS~--DgtVrIWDl~t~--~~v--~~~~~~--~~VtsvafSPdG~~LasGs~-----------------DG~I~lwD 677 (755)
+++-.. +.+|.+|++... ... ....+. ...+.+++.++|.+.++... .|.|+.|+
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 467888876542 222 222222 46899999999987776541 24455555
Q ss_pred CCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
. ++.... ...-..-++++|+|+++.++++-+..++|+.|+
T Consensus 210 ~--~~~~~~----------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~ 249 (355)
T 3sre_A 210 P--NDVRVV----------AEGFDFANGINISPDGKYVYIAELLAHKIHVYE 249 (355)
T ss_dssp T--TCCEEE----------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred C--CeEEEe----------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEE
Confidence 4 221110 022345789999999985555557788999998
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.16 E-value=1.8 Score=50.05 Aligned_cols=223 Identities=9% Similarity=-0.052 Sum_probs=112.7
Q ss_pred CCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEE-CCCcEEEEeCcCCceeeeeecccccCccccEE
Q 004404 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (755)
Q Consensus 429 ~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs-~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~ 507 (755)
....|+..++......... +...-..+.+|+|++.+..|+-+. ..+.|..+++........+.. .......
T Consensus 16 ~~~~I~~i~~~~~~~~~~~----~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~----~~~~~P~ 87 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATI----VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV----SGLLSPD 87 (619)
T ss_dssp CSSBEEEECCC-------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC----SSCSCEE
T ss_pred ccccEEEEeCCCCcceEEE----EEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe----CCCCCcC
Confidence 3556666766533211111 112334578999999666555444 467888888765422112211 1112233
Q ss_pred EeecCCC-CceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEec-cCCCCEEEEEecCC-cEEEEE
Q 004404 508 LANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHLLSS 584 (755)
Q Consensus 508 ~v~~s~d-g~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~-gH~~~V~~L~~spd-~~LaSg 584 (755)
.++..+. +.++.+....+.+. +..+.++....+. .......+|++.|. ++|+.+
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~-----------------------v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~t 144 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIE-----------------------VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWT 144 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEE-----------------------EEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEE
T ss_pred eEEEEecCCEEEEEeCCCCEEE-----------------------EEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEe
Confidence 4455543 33333332333331 2222333322222 33345678899886 776666
Q ss_pred eC--CCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-CCCCEEEEEEccC
Q 004404 585 SM--DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYTPD 660 (755)
Q Consensus 585 s~--DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-~~~~VtsvafSPd 660 (755)
.. .+.|...++.......... .-...+.|++++.+++++++=...+.|..+|+.......+.. .......|++..+
T Consensus 145 D~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~ 224 (619)
T 3s94_A 145 DWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED 224 (619)
T ss_dssp ECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS
T ss_pred ccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC
Confidence 54 3567777766433333332 445689999998334444444556789999887644332221 1223346677655
Q ss_pred CCEEEEE-ECCCcEEEEECCCCeee
Q 004404 661 GQGALVG-SYKGSCHLYNTSENKLQ 684 (755)
Q Consensus 661 G~~LasG-s~DG~I~lwDl~~~~~~ 684 (755)
.|+.. ...+.|...|..+++..
T Consensus 225 --~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 225 --ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp --EEEEECTTTCSEEEEESSSCCCC
T ss_pred --EEEEecCCCCEEEEEECCCCccc
Confidence 55554 45678999998877543
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.13 E-value=0.029 Score=66.13 Aligned_cols=153 Identities=10% Similarity=-0.000 Sum_probs=95.4
Q ss_pred CCEEEEEecCC-cEEEEEe-CCCcEEEEECCC----CcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC
Q 004404 568 DDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSS----KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (755)
Q Consensus 568 ~~V~~L~~spd-~~LaSgs-~DgtVrLWDl~t----~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~ 640 (755)
..+..|+|.+. +.|+.+. ..+.|+.+++.. ......+. .......|++.+..++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 34667888875 6655544 567899999875 22222221 12345678887635566666566789999998876
Q ss_pred cEEEeccC-CCCEEEEEEccCCCEEEEEEC--CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEE
Q 004404 641 QVVDWNDL-HEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (755)
Q Consensus 641 ~~v~~~~~-~~~VtsvafSPdG~~LasGs~--DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~ 717 (755)
....+... ......|++.|.+.+|+.... .+.|+.+++......... .......++|+|.|++..+++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~---------~~~l~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------TENIQWPNGITLDLLSGRLYW 556 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES---------CSSCSSCCCEEECTTTCCEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE---------eCCCCCccEEEEeccCCEEEE
Confidence 65544432 245678999997666655443 267888777643322111 012234678999998765556
Q ss_pred EEECCCcEEEEE
Q 004404 718 VTSADSRIRVVD 729 (755)
Q Consensus 718 sgs~Dg~IrVWD 729 (755)
+-...++|.++|
T Consensus 557 aD~~~~~I~~~d 568 (699)
T 1n7d_A 557 VDSKLHSISSID 568 (699)
T ss_dssp EETTTTEEEEEC
T ss_pred EecCCCeEEEEc
Confidence 656778899998
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=94.60 E-value=8.5 Score=44.29 Aligned_cols=153 Identities=6% Similarity=-0.019 Sum_probs=98.7
Q ss_pred CCEEEEEecCC-cEEEEEe-CCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEE
Q 004404 568 DDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (755)
Q Consensus 568 ~~V~~L~~spd-~~LaSgs-~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~ 644 (755)
..+.+|+|.+. +.|+.+. ..+.|+.+++........+. .-.....|++.+..++++++-+..+.|.+.++.......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 35778999874 6655544 57889999987654433333 335677899987456666666677899999987654333
Q ss_pred ec-cCCCCEEEEEEccCCCEEEEEEC--CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 645 WN-DLHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 645 ~~-~~~~~VtsvafSPdG~~LasGs~--DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
+. ..-.....+++.|...+|+.... ...|...++......... ...-...++|++.+.+..++++-+.
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~---------~~~l~~P~GlalD~~~~~LY~aD~~ 499 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV---------NTSLGWPNGLALDYDEGKIYWGDAK 499 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---------CSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE---------eCCCCCCeeeEEcccCCEEEEEECC
Confidence 32 23357899999997445555543 356777777654322111 1234567899999876634444455
Q ss_pred CCcEEEEE
Q 004404 722 DSRIRVVD 729 (755)
Q Consensus 722 Dg~IrVWD 729 (755)
.++|..++
T Consensus 500 ~~~I~~~~ 507 (619)
T 3s94_A 500 TDKIEVMN 507 (619)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEe
Confidence 67888887
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.19 E-value=7.1 Score=41.71 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=53.3
Q ss_pred CcEEEEeecCCceEEEEEeeCCCcEEEEEE-CCCcEEEEECCC-CcEE--EeccCCCCEEEEEEcc-CCCEEEEEECC-C
Q 004404 598 KTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPE-RQVV--DWNDLHEMVTAACYTP-DGQGALVGSYK-G 671 (755)
Q Consensus 598 ~~~~~~~~h~~~VtsVafsP~dg~~LaSgS-~DgtVrIWDl~t-~~~v--~~~~~~~~VtsvafSP-dG~~LasGs~D-G 671 (755)
+++......-...+.|+|+| |++.|+.+. ..+.|..|++.. +.+. +.+......-.+++.+ +|.+.+++..+ +
T Consensus 211 ~~~~~~~~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~ 289 (355)
T 3sre_A 211 NDVRVVAEGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGM 289 (355)
T ss_dssp TCCEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHH
T ss_pred CeEEEeecCCcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCce
Confidence 34333334445679999999 887766654 578899999863 4332 2334456788899999 59877766544 3
Q ss_pred cEEEEECC
Q 004404 672 SCHLYNTS 679 (755)
Q Consensus 672 ~I~lwDl~ 679 (755)
.|..|+..
T Consensus 290 ~v~~~~P~ 297 (355)
T 3sre_A 290 RIFFYDAE 297 (355)
T ss_dssp HHHSCCTT
T ss_pred EEEEECCC
Confidence 45555554
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.16 E-value=0.62 Score=51.06 Aligned_cols=140 Identities=9% Similarity=0.103 Sum_probs=90.4
Q ss_pred CCCcEEEEECCCCcEEEEeecC-----CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc------------EEEecc-
Q 004404 586 MDKTVRLWHLSSKTCLKIFSHS-----DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ------------VVDWND- 647 (755)
Q Consensus 586 ~DgtVrLWDl~t~~~~~~~~h~-----~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~------------~v~~~~- 647 (755)
.++.||.-++......+.+... ..|..+..+| +|++|+..+ +.+|.|-.+..+. ....+.
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEc
Confidence 3478888888755555566532 2588899999 999888775 6689999987321 011111
Q ss_pred ------CCCCEEEEEEccC---CCEEEEEECCCcEEEEECCCCeeeec-cccccccccccCCCCCeEEEEEccCCCeEEE
Q 004404 648 ------LHEMVTAACYTPD---GQGALVGSYKGSCHLYNTSENKLQQK-SPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (755)
Q Consensus 648 ------~~~~VtsvafSPd---G~~LasGs~DG~I~lwDl~~~~~~~~-~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~ 717 (755)
....|..+.|+|- +..|++-..|+.|++||+........ +...............|.+++|.+++= -|.
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~l-TLY 195 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGL-TLY 195 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSS-CEE
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCc-EEE
Confidence 2467999999994 57899999999999999987332111 100000011123346789999999664 344
Q ss_pred EE--ECCCcEEEE
Q 004404 718 VT--SADSRIRVV 728 (755)
Q Consensus 718 sg--s~Dg~IrVW 728 (755)
+. +..|-|+-.
T Consensus 196 vl~~t~~GDIYAl 208 (452)
T 3pbp_A 196 CLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEecCCCCCEEEE
Confidence 43 366766543
No 309
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.80 E-value=8 Score=40.95 Aligned_cols=232 Identities=8% Similarity=0.104 Sum_probs=141.1
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEe
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v 509 (755)
...+.++|+.++.....+ . ....|.-=+|-.+. .|+-.+ +..|.-|++.......++......-....+...
T Consensus 86 g~~LQiFnletK~klks~-----~-~~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY 157 (365)
T 2xzh_A 86 GKTLQIFNIEMKSKMKAH-----T-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 157 (365)
T ss_dssp TTEEEEEETTTTEEEEEE-----E-CSSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEE
T ss_pred CCeEEEechHHhhhhcce-----e-cCCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEE
Confidence 678999999866533222 1 23567666775444 344443 358999999764444333322222234566666
Q ss_pred ecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC----cEEEEEe
Q 004404 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS----QHLLSSS 585 (755)
Q Consensus 510 ~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd----~~LaSgs 585 (755)
..+++...++...... .. ......-.++....+.-+.+.||.+.-..+....+ ..|+.+.
T Consensus 158 ~~d~~~kW~~l~GI~~------~~----------~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 221 (365)
T 2xzh_A 158 RTDAKQKWLLLTGISA------QQ----------NRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAV 221 (365)
T ss_dssp EECTTSCEEEEEEEEE------ET----------TEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred EECCCCCEEEEEeEec------cC----------CccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEE
Confidence 6666666554321100 00 00011115677777778888999776555544322 3344333
Q ss_pred C---CCcEEEEECCCC---------cEEEEe-e---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-C
Q 004404 586 M---DKTVRLWHLSSK---------TCLKIF-S---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-L 648 (755)
Q Consensus 586 ~---DgtVrLWDl~t~---------~~~~~~-~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-~ 648 (755)
. .++++|-++... +.+..+ . ..+...++..++ ....++.-+.-|.|++||+.++.++.... .
T Consensus 222 r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS 300 (365)
T 2xzh_A 222 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRIS 300 (365)
T ss_dssp EETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccC
Confidence 3 258899988542 122222 1 356678899998 77888899999999999999999884433 3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec
Q 004404 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (755)
Q Consensus 649 ~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~ 686 (755)
.+.|...+......-++.-...|.|.--.+....++..
T Consensus 301 ~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivpy 338 (365)
T 2xzh_A 301 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPY 338 (365)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHHHH
T ss_pred CCceEEecccCCCCcEEEEcCCCEEEEEEECcccEehh
Confidence 45666666666656777777899888888877666543
No 310
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.10 E-value=17 Score=42.50 Aligned_cols=275 Identities=10% Similarity=0.043 Sum_probs=141.5
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecc
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~ 497 (755)
.+....+|.|+..| +..++...+.+...............|.+|...+++..|..|.. +-|..++..+.+... +.
T Consensus 153 ~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~-- 227 (758)
T 3ott_A 153 RTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TE-- 227 (758)
T ss_dssp ECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EE--
T ss_pred EcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-cc--
Confidence 44445566666654 66677665443221100000001235889988877765555554 457778876554221 11
Q ss_pred cccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecC
Q 004404 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (755)
Q Consensus 498 ~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~sp 577 (755)
......+..+....++.+.+.. ..+............ .+......... -....|.+|....
T Consensus 228 --~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~--------------~~~~~~~~~~~--l~~~~i~~i~~D~ 288 (758)
T 3ott_A 228 --AFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPLQ--------------HIIHDSRNIQS--LTNNIIWNIFADQ 288 (758)
T ss_dssp --EEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCCE--------------EECCCTTCTTS--CSCSCEEEEEECT
T ss_pred --CCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcEE--------------EEEcCCCCcCc--CCcCeEEEEEEcC
Confidence 0112345555555666655544 223221111100000 00000000000 0124588888887
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEee--------cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc--EEEecc
Q 004404 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VVDWND 647 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t~~~~~~~~--------h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~--~v~~~~ 647 (755)
++.|..|+..| +.++.... ....+. ....|.++.-.. ++.+ ..|+.+| +..++..++. ......
T Consensus 289 ~g~lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~-~g~l-WiGt~~G-l~~~~~~~~~~~~~~~~~ 362 (758)
T 3ott_A 289 EHNIWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDS-KGFY-WFGGANG-LIRFTDPAGERHDAIWYR 362 (758)
T ss_dssp TCCEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECT-TCCE-EEEETTE-EEEESCTTSSCCCCEEEC
T ss_pred CCCEEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcC-CCCE-EEeeCCc-ceeecccccccceeEEec
Confidence 78888888777 55554322 112221 234688888776 5554 4456554 6667655432 111111
Q ss_pred --------CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 648 --------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 648 --------~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
....|.++.-..+|+ |.+|+ ++-|..||..+++...... . ..........|.++...+++ .|.+|
T Consensus 363 ~~~~~~~l~~~~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~-~--~~~~~~~~~~v~~i~~d~~g--~lWig 435 (758)
T 3ott_A 363 MGDKTYPLSHNRIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNI-V--DNTGTYNTNWTYYIFEDTAG--QLWIS 435 (758)
T ss_dssp TTCSSSCCSCSCEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEE-E--CCC--CBSSSEEEEEECTTS--EEEEE
T ss_pred cCCcCCCCCCCceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeec-C--CCcCCCCCceEEEEEEcCCC--CEEEE
Confidence 123588888888775 56666 5679999998876543211 0 00000123568888777766 57778
Q ss_pred ECCCcEEEEE
Q 004404 720 SADSRIRVVD 729 (755)
Q Consensus 720 s~Dg~IrVWD 729 (755)
+..+-|.++|
T Consensus 436 T~~~Gl~~~~ 445 (758)
T 3ott_A 436 TCLGGIFVVD 445 (758)
T ss_dssp ESSSCEEEEE
T ss_pred ECCCceEEEc
Confidence 8777788888
No 311
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.93 E-value=6.3 Score=43.54 Aligned_cols=31 Identities=6% Similarity=-0.073 Sum_probs=22.2
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCcEEEEeCc
Q 004404 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (755)
Q Consensus 456 ~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~ 486 (755)
-...+.|+|.|+|+++++--..+.|++++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~ 56 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPE 56 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECC
Confidence 3467899999999977765433467777653
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.89 E-value=13 Score=40.82 Aligned_cols=231 Identities=8% Similarity=0.108 Sum_probs=142.3
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEe
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v 509 (755)
...+.+||+.++.....+ .- ...|.-=+|-.+. .|+-.+ +..|.-|++.......++......-....+...
T Consensus 85 g~~lQiFnle~K~klks~-----~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY 156 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAH-----TM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 156 (494)
T ss_dssp TTEEEEEETTTTEEEEEE-----EC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEE
T ss_pred CCeEEEEchHHhhhhcce-----ec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEE
Confidence 788999999866532222 11 2455555665433 344443 468999999764443333322222234566666
Q ss_pred ecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC----cEEEEEe
Q 004404 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS----QHLLSSS 585 (755)
Q Consensus 510 ~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd----~~LaSgs 585 (755)
..+++...++...... .. ......-.++....+.-+.+.||.+.-..+....+ ..|..+.
T Consensus 157 ~~d~~~kW~~l~GI~~------~~----------~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 157 RTDAKQKWLLLTGISA------QQ----------NRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp EECTTSSEEEEEEEEE------ET----------TEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred EECCCCCeEEEEeecc------cC----------CcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 6666666554321100 00 00011115677777888889999876666655432 3444454
Q ss_pred CC---CcEEEEECCCC---------cEEEEe-e---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-C
Q 004404 586 MD---KTVRLWHLSSK---------TCLKIF-S---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-L 648 (755)
Q Consensus 586 ~D---gtVrLWDl~t~---------~~~~~~-~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~-~ 648 (755)
.. ++++|-++... +.+..+ . ..+...++..++ ....++.-+.-|.|.+||+.++.++.... .
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs 299 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeeccc
Confidence 43 78999998543 111111 1 356678899998 77888899999999999999999884433 3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeee
Q 004404 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (755)
Q Consensus 649 ~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~ 685 (755)
.+.|...+......-++.-...|.|.--.+....++.
T Consensus 300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred CCceEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 4566666666666677777789988888887766554
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=92.20 E-value=13 Score=39.23 Aligned_cols=99 Identities=10% Similarity=0.076 Sum_probs=57.7
Q ss_pred EEEEEecC-CcEEEEEeCCC----cEEEEECCC----------------CcEEEEe-ecCCceEEEEEee------CCCc
Q 004404 570 VLDLSWSK-SQHLLSSSMDK----TVRLWHLSS----------------KTCLKIF-SHSDYVTCIQFNP------VDDR 621 (755)
Q Consensus 570 V~~L~~sp-d~~LaSgs~Dg----tVrLWDl~t----------------~~~~~~~-~h~~~VtsVafsP------~dg~ 621 (755)
...|+|+| ++.|+++-... .|.+..... ..++..+ ........++|.. .++.
T Consensus 199 p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~ 278 (354)
T 3a9g_A 199 PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGW 278 (354)
T ss_dssp CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTE
T ss_pred cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCc
Confidence 56799999 56666655432 133322110 0122333 2234678888841 1677
Q ss_pred EEEEEECCCcEEEEECCCC-cEE---Eecc-CCCCEEEEEEccCCCEEEEEE
Q 004404 622 YFISGSLDAKVRIWSIPER-QVV---DWND-LHEMVTAACYTPDGQGALVGS 668 (755)
Q Consensus 622 ~LaSgS~DgtVrIWDl~t~-~~v---~~~~-~~~~VtsvafSPdG~~LasGs 668 (755)
++++.-..+.|...++... ... .+.. ....+..+++.|||.+.++..
T Consensus 279 l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 279 LLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 7777666778888888753 332 2222 245789999999996555543
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.01 E-value=3.5 Score=45.19 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=67.6
Q ss_pred CCcEEEEEECCCcEEEEECCCCc-E--EEecc--CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeec-----cc
Q 004404 619 DDRYFISGSLDAKVRIWSIPERQ-V--VDWND--LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK-----SP 688 (755)
Q Consensus 619 dg~~LaSgS~DgtVrIWDl~t~~-~--v~~~~--~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~-----~~ 688 (755)
++..++.+- ++.||.-++.... . +.... .-..|..+..+|+|++||..+ +..|.|-.+..+..... ..
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444443 4667777766332 2 22221 112577899999999999986 56899999884432111 00
Q ss_pred cccccccc----cCCCCCeEEEEEccCCC--eEEEEEECCCcEEEEEC
Q 004404 689 INLQNKKK----RSHQRKITGFQFAPGSS--SEVLVTSADSRIRVVDG 730 (755)
Q Consensus 689 i~~~~~~~----~~h~~~Vtsl~fsPdg~--~~L~sgs~Dg~IrVWD~ 730 (755)
+....... .....+|..+.|+|-+. ..|++-..|++||+||.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl 156 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDI 156 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEET
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEc
Confidence 00000011 11357899999999653 27999999999999993
No 315
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.96 E-value=0.38 Score=48.18 Aligned_cols=136 Identities=10% Similarity=0.070 Sum_probs=79.9
Q ss_pred EEEEEeCCCcEEEEECCCCc------EEEEeec--CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccCCCC
Q 004404 580 HLLSSSMDKTVRLWHLSSKT------CLKIFSH--SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM 651 (755)
Q Consensus 580 ~LaSgs~DgtVrLWDl~t~~------~~~~~~h--~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~ 651 (755)
+|+....| +|+.=-...+. ....+.. =..+..++|+| ++.+.+. .+|.+.-.+..+.....+......
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 45666666 66655544433 2344443 24778999999 8886666 678777777655333333332222
Q ss_pred --------EEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC
Q 004404 652 --------VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (755)
Q Consensus 652 --------VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg 723 (755)
..++.|.|+|.+.++ .||.|+-++..+......+-. -.+.-..-=..+..|.|.|+|- |.... |+
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~--a~~vg~~gw~~~~~lff~p~G~--Lyav~-dg 154 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIAR--ATEVGSGGWSGFKFLFFHPNGY--LYAVH-GQ 154 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH--SEEEECSSGGGEEEEEECTTSC--EEEEE-TT
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceecc--ccEeccCCCCceEEEEECCCce--EEEEe-CC
Confidence 478999999987777 569998887644222211100 0000001114678999999996 44444 77
Q ss_pred cEE
Q 004404 724 RIR 726 (755)
Q Consensus 724 ~Ir 726 (755)
.+.
T Consensus 155 ~ly 157 (236)
T 1tl2_A 155 QFY 157 (236)
T ss_dssp EEE
T ss_pred cEE
Confidence 753
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.89 E-value=0.43 Score=47.74 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=65.3
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCCcE------EEEeec--CCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC
Q 004404 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC------LKIFSH--SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (755)
Q Consensus 569 ~V~~L~~spd~~LaSgs~DgtVrLWDl~t~~~------~~~~~h--~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~ 640 (755)
.+.+|+|+|++.|... .+|.++-.+..+... -..+.. -..-.++.|.| ++.+.++ .||.|.-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999877777 777766666544221 122221 01147889999 8887776 5699988876543
Q ss_pred cEEEec--------cCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 004404 641 QVVDWN--------DLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (755)
Q Consensus 641 ~~v~~~--------~~~~~VtsvafSPdG~~LasGs~DG~I~lw 676 (755)
....|. ..-..+..|.|.|+|.+.++. |+.++-+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence 211111 111467999999999777666 7776543
No 317
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.19 E-value=11 Score=41.50 Aligned_cols=101 Identities=11% Similarity=0.130 Sum_probs=62.6
Q ss_pred CCCEEEEEecCCcEEEEEeCCC-cEEEEECCCCcEEEE--ee-------cCCceEEEEEeeCC---CcEEEEEEC-----
Q 004404 567 LDDVLDLSWSKSQHLLSSSMDK-TVRLWHLSSKTCLKI--FS-------HSDYVTCIQFNPVD---DRYFISGSL----- 628 (755)
Q Consensus 567 ~~~V~~L~~spd~~LaSgs~Dg-tVrLWDl~t~~~~~~--~~-------h~~~VtsVafsP~d---g~~LaSgS~----- 628 (755)
-...+.|+|.|++.|+++...+ .|++++...++.... +. ....+..|+|+| + +.+|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEeccccC
Confidence 4467899999998888888876 699988765544322 21 134577999999 5 455554432
Q ss_pred --------CCcEEEEECCCC--c-----EE-Eecc--CCCCEEEEEEccCCCEEEEEE
Q 004404 629 --------DAKVRIWSIPER--Q-----VV-DWND--LHEMVTAACYTPDGQGALVGS 668 (755)
Q Consensus 629 --------DgtVrIWDl~t~--~-----~v-~~~~--~~~~VtsvafSPdG~~LasGs 668 (755)
...|.-|++... . .+ .... .......|+|.|||.+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555554321 1 11 1111 123578999999998666643
No 318
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=90.84 E-value=39 Score=41.88 Aligned_cols=130 Identities=13% Similarity=0.144 Sum_probs=83.5
Q ss_pred CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEE--EeccCCCCEEEEEEccC---
Q 004404 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV--DWNDLHEMVTAACYTPD--- 660 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v--~~~~~~~~VtsvafSPd--- 660 (755)
..|++.+......+..+. ....|...+.+. .+++.++ .+.+.++.+..+++. ........|.++++.|.
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~---~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~ 567 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS---SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDS 567 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEECS---SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSS
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC---CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCC
Confidence 347777766555565554 334677777653 4666665 678888888765433 33445678999999863
Q ss_pred ---CCEEEEEEC-CCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEcc-CCCeEEEEEECCCcEEEEE
Q 004404 661 ---GQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-GSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 661 ---G~~LasGs~-DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsP-dg~~~L~sgs~Dg~IrVWD 729 (755)
++++++|.. |++++|+.+.+.+.+....+ +......++.+.. .+..+|.+|-.||.+.-+.
T Consensus 568 ~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L--------~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~ 633 (1158)
T 3ei3_A 568 NGLSPLCAIGLWTDISARILKLPSFELLHKEML--------GGEIIPRSILMTTFESSHYLLCALGDGALFYFG 633 (1158)
T ss_dssp TTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC--------CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred cccccEEEEEECCCCEEEEEECCCCCeEEEEEC--------CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEE
Confidence 479999997 99999999987655543221 1112333443321 2345788899999875443
No 319
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.43 E-value=31 Score=40.13 Aligned_cols=271 Identities=7% Similarity=0.017 Sum_probs=138.0
Q ss_pred ecCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeec
Q 004404 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (755)
Q Consensus 417 ~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~ 496 (755)
..+....+|.|+..| +..||..+..+.... ......|.++.. .+| .|..++.+ -|..++..+.+.. .+..
T Consensus 69 ~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~-----~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~ 138 (758)
T 3ott_A 69 VIIDNTYLYMGTDNG-ILVYNYRADRYEQPE-----TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDT 138 (758)
T ss_dssp EEETTTEEEEEETTE-EEEEETTTTEECCCS-----CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECH
T ss_pred EEcCCCcEEEEeCCC-eEEEeCCCCEEECcc-----cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Eecc
Confidence 345556788888766 678888765443211 112345877765 355 45556665 5778887654422 2211
Q ss_pred ccccCccccEEEeecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEec
Q 004404 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (755)
Q Consensus 497 ~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~s 576 (755)
.........+..+....++.+.+... .+............ .+..... .......|.+|...
T Consensus 139 ~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~--------------~~~~~~~----~~~~~~~i~~i~~d 199 (758)
T 3ott_A 139 RRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFE--------------GIPLPVH----SSQSNLFVNSLLED 199 (758)
T ss_dssp HHHCCSCSCEEEEEECTTCCEEEEET-TEEEEEETTTTEEE--------------EECCCCC----TTCSSCCEEEEEEE
T ss_pred CCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhhCccCCCceE--------------EecCCCc----cccccceeEEEEEE
Confidence 11111223455555555555554332 22211110000000 0000000 00012347888877
Q ss_pred CC-cEEEEEeCCCcEEEEECCCCcEEEEee-cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc-------
Q 004404 577 KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND------- 647 (755)
Q Consensus 577 pd-~~LaSgs~DgtVrLWDl~t~~~~~~~~-h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~------- 647 (755)
++ +.|..|.. +-|..++..+++...... ....|.++.... ++.+ ..|+. +-+.+++..+++......
T Consensus 200 ~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~ 275 (758)
T 3ott_A 200 TTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQS 275 (758)
T ss_dssp TTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTS
T ss_pred CCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCc
Confidence 65 55666664 468889987765433222 334688888776 5554 44554 458889887766543321
Q ss_pred -CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEE
Q 004404 648 -LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (755)
Q Consensus 648 -~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~Ir 726 (755)
....|.++....+|. |.+|+..| +.++... .... .+... ..........|.++.-..+|. |.+|+.+| +.
T Consensus 276 l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~~~-~~~~~--~~~~~~~~~~v~~i~~D~~g~--lWiGt~~G-l~ 346 (758)
T 3ott_A 276 LTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SALQ-FIPIS--QITGTGDGNQFYSLFRDSKGF--YWFGGANG-LI 346 (758)
T ss_dssp CSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C-CE-EEEHH--HHSCSCCCCBEEEEEECTTCC--EEEEETTE-EE
T ss_pred CCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Ccee-EEecc--cCCCCCCCceEEEEEEcCCCC--EEEeeCCc-ce
Confidence 124688898887774 67777766 5554332 2111 11100 000011234688887777775 55566554 55
Q ss_pred EEE
Q 004404 727 VVD 729 (755)
Q Consensus 727 VWD 729 (755)
.++
T Consensus 347 ~~~ 349 (758)
T 3ott_A 347 RFT 349 (758)
T ss_dssp EES
T ss_pred eec
Confidence 555
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.04 E-value=21 Score=37.59 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=43.0
Q ss_pred eecCCceEEEEEeeC------CCcEEEEEECCCcEEEEECCCCcEEE---ec-cCCCCEEEEEEccCCCEEEEE
Q 004404 604 FSHSDYVTCIQFNPV------DDRYFISGSLDAKVRIWSIPERQVVD---WN-DLHEMVTAACYTPDGQGALVG 667 (755)
Q Consensus 604 ~~h~~~VtsVafsP~------dg~~LaSgS~DgtVrIWDl~t~~~v~---~~-~~~~~VtsvafSPdG~~LasG 667 (755)
+.+...+..+.|... ++.+|++.-..+.|...++..++.+. +. .....+..+++.|||.++++.
T Consensus 267 ~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 267 WKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp ESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred eCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 344456788888641 36777777777888888887665442 22 223579999999999855543
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=89.41 E-value=24 Score=37.38 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=25.7
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcC
Q 004404 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE 487 (755)
Q Consensus 455 H~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t 487 (755)
.-...+.|+|.|||++|++--..|.|++++...
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~ 62 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKT 62 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCC
Confidence 345678999999999877765589998887543
No 322
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=89.08 E-value=25 Score=37.17 Aligned_cols=220 Identities=12% Similarity=0.124 Sum_probs=120.3
Q ss_pred CCCcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEE
Q 004404 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (755)
Q Consensus 428 ~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~ 507 (755)
.+...|-+.|+..+....... +. -. +.-.+|..+.||--. ..++.|+|+++.+++....- ...+.
T Consensus 46 ~~~~~VvIiDl~n~~~~~Rrp---i~-Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~------~e~Vv 110 (365)
T 2xzh_A 46 GEQAQVVIIDMNDPSNPIRRP---IS-AD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM------TDDVT 110 (365)
T ss_dssp TTEEEEEEEETTSTTSCEEEE---CC-CS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC------SSCEE
T ss_pred CCCCEEEEEECCCCCCccccc---cc-cc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec------CCccE
Confidence 344477888887655432111 11 11 223477777777665 57899999999887766521 12333
Q ss_pred EeecCCCCce-eccccCCCceeeecccccccccccccCcccccceeeec--CCCceEEeccCC----CCEEEEEecCC-c
Q 004404 508 LANGSPEPTS-LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHL----DDVLDLSWSKS-Q 579 (755)
Q Consensus 508 ~v~~s~dg~~-l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~--s~k~i~~l~gH~----~~V~~L~~spd-~ 579 (755)
.-.|-.+.++ +++.. .+. .|.+ ...|++.|.-|. ..|.....+++ .
T Consensus 111 fWkWis~~~L~lVT~t---aVy-----------------------HWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~k 164 (365)
T 2xzh_A 111 FWKWISLNTVALVTDN---AVY-----------------------HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQK 164 (365)
T ss_dssp EEEECSSSEEEEEESS---EEE-----------------------EEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSC
T ss_pred EEEecCCCeEEEEcCC---cEE-----------------------EEcccCCCCCceeeecchhcccceEEEEEECCCCC
Confidence 4444433332 22221 111 1222 123444443332 34555566665 3
Q ss_pred EEEEEe-------CCCcEEEEECCCCcEEEEeecCCceEEEEEe--eCCCcEEEEEEC---CCcEEEEECCCC-------
Q 004404 580 HLLSSS-------MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFN--PVDDRYFISGSL---DAKVRIWSIPER------- 640 (755)
Q Consensus 580 ~LaSgs-------~DgtVrLWDl~t~~~~~~~~h~~~VtsVafs--P~dg~~LaSgS~---DgtVrIWDl~t~------- 640 (755)
.++..+ -.|.+.||..+.+.....-+|...-..+.+. +....+|+.+.. .++++|-++...
T Consensus 165 W~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f 244 (365)
T 2xzh_A 165 WLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 244 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCC
T ss_pred EEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCc
Confidence 333222 2378999998876544433344333222221 100123333322 258999998432
Q ss_pred --cEEEec-cC---CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccc
Q 004404 641 --QVVDWN-DL---HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 641 --~~v~~~-~~---~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
+.+... .. .+-..++..++.-..++.-+.-|.|++||++++.++..-.
T Consensus 245 ~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nr 298 (365)
T 2xzh_A 245 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 298 (365)
T ss_dssp CCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEec
Confidence 122222 11 2457789999988899999999999999999999887644
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=87.22 E-value=28 Score=35.45 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=54.9
Q ss_pred CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEEC-C-----CcEEEEECCCCcEEEeccCCC---CEEEEE
Q 004404 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSL-D-----AKVRIWSIPERQVVDWNDLHE---MVTAAC 656 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~-D-----gtVrIWDl~t~~~v~~~~~~~---~Vtsva 656 (755)
..+.+||..+.+-...-. ....-.+++. - ++++++.|+. + ..+.+||+.+.+-........ ...++.
T Consensus 117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 194 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLS-H-MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV 194 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCCcEeECCCCCCcccceeEEE-E-CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE
Confidence 458888887765332211 1111122222 2 6677777775 2 468999998876554332221 122233
Q ss_pred EccCCCEEEEEECCC-----cEEEEECCCCeeeec
Q 004404 657 YTPDGQGALVGSYKG-----SCHLYNTSENKLQQK 686 (755)
Q Consensus 657 fSPdG~~LasGs~DG-----~I~lwDl~~~~~~~~ 686 (755)
+ +++.++.|+.++ .+.+||+.+.+-...
T Consensus 195 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 195 H--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp E--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred E--CCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 3 677777877654 488999988865543
No 324
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=87.13 E-value=17 Score=36.57 Aligned_cols=94 Identities=13% Similarity=0.228 Sum_probs=54.5
Q ss_pred CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECC-----CcEEEEECCCCcEEEeccCCC---CEEEEEE
Q 004404 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQVVDWNDLHE---MVTAACY 657 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~D-----gtVrIWDl~t~~~v~~~~~~~---~Vtsvaf 657 (755)
..+.+||+.+.+-...-. ....-.+++.. ++.+++.|+.+ ..|.+||+.+.+-........ ....+.+
T Consensus 175 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 252 (301)
T 2vpj_A 175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL 252 (301)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred ceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE
Confidence 458888887765443322 11111222222 56777777764 468999998877554433221 2222333
Q ss_pred ccCCCEEEEEECC-----CcEEEEECCCCeeee
Q 004404 658 TPDGQGALVGSYK-----GSCHLYNTSENKLQQ 685 (755)
Q Consensus 658 SPdG~~LasGs~D-----G~I~lwDl~~~~~~~ 685 (755)
+++.++.|+.+ ..+.+||+.+.+-..
T Consensus 253 --~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 253 --RGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp --TTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred --CCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 67777777655 357888888776543
No 325
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=85.28 E-value=11 Score=38.26 Aligned_cols=138 Identities=11% Similarity=0.102 Sum_probs=75.3
Q ss_pred cEEEEEeCC-----CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECC-----CcEEEEECCCCcEEEec
Q 004404 579 QHLLSSSMD-----KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQVVDWN 646 (755)
Q Consensus 579 ~~LaSgs~D-----gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~D-----gtVrIWDl~t~~~v~~~ 646 (755)
..++.|+.+ ..+.+||+.+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-....
T Consensus 114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 191 (301)
T 2vpj_A 114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT 191 (301)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence 445555543 468899988765443322 22221222222 56777777654 45889999887655443
Q ss_pred cCCC---CEEEEEEccCCCEEEEEECC-----CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 647 DLHE---MVTAACYTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 647 ~~~~---~VtsvafSPdG~~LasGs~D-----G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
.... ....+.+ +++.++.|+.+ ..+.+||+.+.+-......+. ....| ..+.+ ++. +++.
T Consensus 192 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~---~r~~~----~~~~~--~~~-i~v~ 259 (301)
T 2vpj_A 192 PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT---PRCYV----GATVL--RGR-LYAI 259 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS---CCBSC----EEEEE--TTE-EEEE
T ss_pred CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC---cccce----eEEEE--CCE-EEEE
Confidence 3222 1222332 56777777764 468999999887654322110 11111 22222 444 6666
Q ss_pred EECC-----CcEEEEEC
Q 004404 719 TSAD-----SRIRVVDG 730 (755)
Q Consensus 719 gs~D-----g~IrVWD~ 730 (755)
|+.+ ..|.+||.
T Consensus 260 GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 260 AGYDGNSLLSSIECYDP 276 (301)
T ss_dssp CCBCSSSBEEEEEEEET
T ss_pred cCcCCCcccccEEEEcC
Confidence 7655 35778883
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=83.73 E-value=20 Score=36.35 Aligned_cols=139 Identities=9% Similarity=0.066 Sum_probs=76.3
Q ss_pred CcEEEEEeCC------CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEEC---------CCcEEEEECCCC
Q 004404 578 SQHLLSSSMD------KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSL---------DAKVRIWSIPER 640 (755)
Q Consensus 578 d~~LaSgs~D------gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~---------DgtVrIWDl~t~ 640 (755)
+..++.|+.+ ..+.+||..+.+-...-. ....-.+++.. ++.+++.|+. -..+.+||+.+.
T Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 3555666654 468899988875443322 11111222222 5677777653 345889999888
Q ss_pred cEEEeccCCC---CEEEEEEccCCCEEEEEECC-----CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCC
Q 004404 641 QVVDWNDLHE---MVTAACYTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (755)
Q Consensus 641 ~~v~~~~~~~---~VtsvafSPdG~~LasGs~D-----G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg 712 (755)
+-........ ....+.+ ++++++.|+.+ ..+.+||+.+.+-.....++ ........+.+ ++
T Consensus 180 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~--~~ 248 (306)
T 3ii7_A 180 TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP-------WKGVTVKCAAV--GS 248 (306)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS-------CCBSCCEEEEE--TT
T ss_pred eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC-------CCccceeEEEE--CC
Confidence 6554433222 1222222 56777777653 46899999988755432211 11111222222 44
Q ss_pred CeEEEEEECC-----CcEEEEEC
Q 004404 713 SSEVLVTSAD-----SRIRVVDG 730 (755)
Q Consensus 713 ~~~L~sgs~D-----g~IrVWD~ 730 (755)
. +++.|+.+ ..|.+||.
T Consensus 249 ~-i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 249 I-VYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp E-EEEEECBCSSSBCCEEEEEET
T ss_pred E-EEEEeCcCCCeeeeeEEEEcC
Confidence 3 77777744 56888883
No 327
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=82.50 E-value=7.7 Score=39.39 Aligned_cols=139 Identities=12% Similarity=0.162 Sum_probs=75.7
Q ss_pred CcEEEEEeCCC-----cEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECC-------CcEEEEECCCCcEE
Q 004404 578 SQHLLSSSMDK-----TVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-------AKVRIWSIPERQVV 643 (755)
Q Consensus 578 d~~LaSgs~Dg-----tVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~D-------gtVrIWDl~t~~~v 643 (755)
+..++.|+.++ .+.+||+.+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 45566666543 57888988765443322 22222222322 56777776543 35889999887655
Q ss_pred EeccCCC---CEEEEEEccCCCEEEEEECC-----CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeE
Q 004404 644 DWNDLHE---MVTAACYTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (755)
Q Consensus 644 ~~~~~~~---~VtsvafSPdG~~LasGs~D-----G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~ 715 (755)
....... ....+.+ ++++++.|+.+ ..+.+||+.+.+-........ ....| ..+.+ ++. +
T Consensus 187 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~r~~~----~~~~~--~~~-i 254 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM---CRRNA----GVCAV--NGL-L 254 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS---CCBSC----EEEEE--TTE-E
T ss_pred ECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC---ccccC----eEEEE--CCE-E
Confidence 4432221 2222222 57777777764 468999999876554322111 11111 12222 444 6
Q ss_pred EEEEECCC-----cEEEEEC
Q 004404 716 VLVTSADS-----RIRVVDG 730 (755)
Q Consensus 716 L~sgs~Dg-----~IrVWD~ 730 (755)
++.|+.++ .|.+||.
T Consensus 255 ~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 255 YVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp EEECCBCSSSBCCCEEEEET
T ss_pred EEECCcCCCcccccEEEEcC
Confidence 67776553 4889984
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=82.43 E-value=1 Score=47.96 Aligned_cols=112 Identities=8% Similarity=-0.038 Sum_probs=72.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecC--CceEEEEEe--eCCCcEEEEE-ECCCcEEEEECCCCcEEEeccCC---
Q 004404 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHS--DYVTCIQFN--PVDDRYFISG-SLDAKVRIWSIPERQVVDWNDLH--- 649 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t~~~~~~~~h~--~~VtsVafs--P~dg~~LaSg-S~DgtVrIWDl~t~~~v~~~~~~--- 649 (755)
++.++.++.||.|.-+|..+|+.+..+... .++....-. +.++..++.. +.||.|..++..++.........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 378999999999999999999999998743 333322111 1122333333 68999999999887543211111
Q ss_pred --CCEEE---EEE-c----cCCCEEEEEECCCcEEEEECCCCeeeecccc
Q 004404 650 --EMVTA---ACY-T----PDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (755)
Q Consensus 650 --~~Vts---vaf-S----PdG~~LasGs~DG~I~lwDl~~~~~~~~~~i 689 (755)
.++.. ..+ . ..+..+++|+.+|.++-.|+.+|+.+..+..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 12221 000 0 0355888999999999999999998877654
No 329
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=81.29 E-value=61 Score=34.57 Aligned_cols=151 Identities=13% Similarity=0.053 Sum_probs=84.5
Q ss_pred CCcEEEEEeCCCcEEEEECCCC-----cEEE--EeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCc-------E
Q 004404 577 KSQHLLSSSMDKTVRLWHLSSK-----TCLK--IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-------V 642 (755)
Q Consensus 577 pd~~LaSgs~DgtVrLWDl~t~-----~~~~--~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~-------~ 642 (755)
++.+|+.++..|.++...+..- .-+. .+...+.+..+.... +...|+..+..|.+..+....-. =
T Consensus 112 ~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~-~~~~i~l~T~~G~~irf~~~~v~~~gR~a~G 190 (370)
T 3l6v_A 112 DNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTD-GDRDVLLFASNGKTVRFGESTVRSMGRTATG 190 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEEC-SCCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeC-CCceEEEEeCCCeEEEEEccccCccCCCCCC
Confidence 3468999999999999876421 1122 223455666665554 55678888889998888753311 1
Q ss_pred EEec--cCCCCEEEEEEcc-----------------------------------CCCEEEEEECCCcEEEEECCCCeeee
Q 004404 643 VDWN--DLHEMVTAACYTP-----------------------------------DGQGALVGSYKGSCHLYNTSENKLQQ 685 (755)
Q Consensus 643 v~~~--~~~~~VtsvafSP-----------------------------------dG~~LasGs~DG~I~lwDl~~~~~~~ 685 (755)
+... .....|.++...+ ++..|++.+..|..+...+..-....
T Consensus 191 V~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~ 270 (370)
T 3l6v_A 191 VRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKG 270 (370)
T ss_dssp EECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBC
T ss_pred eeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccc
Confidence 2222 2234566665544 45689999999999888876443322
Q ss_pred ccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.-..-+...++....+.+..+.+..+.. .++..+..|.+.-..
T Consensus 271 Rg~kGv~~~k~~~~~g~lv~~~~v~~~d-~i~liT~~G~~iR~~ 313 (370)
T 3l6v_A 271 RGTQGVIGIQTTERNGKLVRAVLLGSTD-EVMLISDGGTLVRTR 313 (370)
T ss_dssp TTSCCEESSCCCTTTCSEEEEEEECTTC-EEEEEETTCCEEEEE
T ss_pred cCCcceEEEEecCCCCcEEEEEEeCCCc-eEEEEcCCCeEEEee
Confidence 1110001112222234566655444444 455566666654444
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=81.18 E-value=59 Score=34.34 Aligned_cols=247 Identities=13% Similarity=0.103 Sum_probs=114.9
Q ss_pred eeeecCCCcEEEEeCCCcEEEEeeCCCCcccceeee-eEeecccCCEEEEEEcCC----CCEEEEEE--CCCcEEEEeCc
Q 004404 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKC-QEIQAHNGSIWSIKFSLD----GRYLASAG--EDCVIHVWQVV 486 (755)
Q Consensus 414 vs~~~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~-q~l~gH~~~I~sI~fSpd----g~~LaTgs--~DGtVrVWdl~ 486 (755)
+....++ .++++-...++|++++...+....+... ..+....+....|+|+|+ +.+.++-+ .++.|.-|.+.
T Consensus 37 ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~ 115 (347)
T 3das_A 37 LAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYD 115 (347)
T ss_dssp EEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBC
T ss_pred EEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeC
Confidence 3333444 3444444488999887654443221111 011234567899999995 44333322 34455556554
Q ss_pred CCc-------eeeeeecccccCccccEEEeecCCCCceeccccCCCceeeeccc--ccccccccccCcccccceeeecCC
Q 004404 487 ESE-------RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG--RSINRKSLSLDHMVVPETVFALSD 557 (755)
Q Consensus 487 t~~-------~~~~l~~~~~~~~~~~v~~v~~s~dg~~l~~~s~d~~i~~~~~~--~~~~~~s~s~d~~~~~~~v~~~s~ 557 (755)
... ....+.........+....+.+.+++.++++....+........ ..-...-+..+..+....-+ ..
T Consensus 116 ~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf--~~ 193 (347)
T 3das_A 116 EKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF--PG 193 (347)
T ss_dssp TTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS--TT
T ss_pred CCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC--CC
Confidence 421 11122211111222233457788888776664333221100000 00000111111110000000 01
Q ss_pred CceEEeccCCCCEEEEEecCCcEEEEEeC--CCcEEEEECCCC------------------cEEEEeecC-CceEEEEEe
Q 004404 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSM--DKTVRLWHLSSK------------------TCLKIFSHS-DYVTCIQFN 616 (755)
Q Consensus 558 k~i~~l~gH~~~V~~L~~spd~~LaSgs~--DgtVrLWDl~t~------------------~~~~~~~h~-~~VtsVafs 616 (755)
..+. -.||. ....|+|.|++.|.++-. |+.-.|--+..+ .++..+.+. .....++|.
T Consensus 194 ~~i~-a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~ 271 (347)
T 3das_A 194 SPVY-SYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA 271 (347)
T ss_dssp CCEE-EBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE
T ss_pred CeEE-eeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE
Confidence 1111 12454 356789998876666554 222222222221 122333322 466788886
Q ss_pred eCCCcEEEEEECCCcEEEEECCCCcE----EEec-cCCCCEEEEEEccCCCEEEEE
Q 004404 617 PVDDRYFISGSLDAKVRIWSIPERQV----VDWN-DLHEMVTAACYTPDGQGALVG 667 (755)
Q Consensus 617 P~dg~~LaSgS~DgtVrIWDl~t~~~----v~~~-~~~~~VtsvafSPdG~~LasG 667 (755)
++.+|+..-..+.|....+..... ..++ .....+..|+..|||.++++-
T Consensus 272 --~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 272 --EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp --TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred --cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 466677666666776666654422 2222 234679999999999655553
No 331
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=80.59 E-value=61 Score=34.14 Aligned_cols=95 Identities=8% Similarity=-0.001 Sum_probs=57.7
Q ss_pred eCCCcEEEEECCCCcEEEEee-----cCCceEEEEEee-C-------CCcEEEEEECCCcEEEEECCCCcEEEeccCCCC
Q 004404 585 SMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNP-V-------DDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM 651 (755)
Q Consensus 585 s~DgtVrLWDl~t~~~~~~~~-----h~~~VtsVafsP-~-------dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~~~~ 651 (755)
+.||.|..++..+|.....+. ...++.. .-.| . .+..+++|+.+|++...|+.+|+.+..+.....
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 578888888888775554443 2233332 1001 0 356789999999999999999999866554421
Q ss_pred E------E--EEEEc-----cCCCEEEEEECCCcEEEEECCCC
Q 004404 652 V------T--AACYT-----PDGQGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 652 V------t--svafS-----PdG~~LasGs~DG~I~lwDl~~~ 681 (755)
. . +.... -.+..|+.|..+..+.+.+ +++
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG 184 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDG 184 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC-TTS
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC-CCC
Confidence 1 0 11110 1245788887777777777 444
No 332
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.47 E-value=59 Score=39.30 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=31.7
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEec
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~ 646 (755)
.+.+++..+ +..++++-+.|+++|||++.+++++...
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 567777777 7889999999999999999999988654
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=79.17 E-value=55 Score=41.35 Aligned_cols=231 Identities=8% Similarity=0.116 Sum_probs=124.6
Q ss_pred CcEEEEeeCCCCcccceeeeeEeecccCCEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEe
Q 004404 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (755)
Q Consensus 430 dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v 509 (755)
...+.+|++.++.....+. ...+|.-=+|-.+.. |+-.+ +..|..|++........+......-....+...
T Consensus 85 g~~lQiFnl~~k~klks~~------~~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY 156 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHT------MTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 156 (1630)
T ss_pred CCeEEEeehHHhhhhcccc------cCCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEe
Confidence 6889999987665332221 124565556654433 33332 357999999653333222221112223455555
Q ss_pred ecCCCCceeccccCCCceeeecccccccccccccCcccccceeeecCCCceEEeccCCCCEEEEEecCC----cEEEEEe
Q 004404 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS----QHLLSSS 585 (755)
Q Consensus 510 ~~s~dg~~l~~~s~d~~i~~~~~~~~~~~~s~s~d~~~~~~~v~~~s~k~i~~l~gH~~~V~~L~~spd----~~LaSgs 585 (755)
..+++...++..+.... . ..+...-.++....+.-+.+.||.+.-..+....+ ..+..+.
T Consensus 157 ~~d~~~kW~~l~gi~~~------~----------~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 157 RTDAKQKWLLLTGISAQ------Q----------NRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred eeCCCCCeEEEEeeccC------C----------CcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 55666554443211000 0 00001114555555666667788765544444321 2233222
Q ss_pred C---CCcEEEEECCCC---------cEEEEe-e---cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC-
Q 004404 586 M---DKTVRLWHLSSK---------TCLKIF-S---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL- 648 (755)
Q Consensus 586 ~---DgtVrLWDl~t~---------~~~~~~-~---h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~- 648 (755)
. .++++|-++... +.+..+ . ..+...++..++ ....++..+.-|.|.+||+.++.++-....
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris 299 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecccchhhhhcccc
Confidence 2 368888888543 111111 1 245566788888 677888889999999999999987743322
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeee
Q 004404 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (755)
Q Consensus 649 ~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~ 685 (755)
...|...+......-++.....|.|.--.+....++.
T Consensus 300 ~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred CCceEEeccCCCCCceEEEcCCceEEEEEEccchhhh
Confidence 3445444544444455555577777776666655544
No 334
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=78.47 E-value=66 Score=33.28 Aligned_cols=104 Identities=15% Similarity=0.087 Sum_probs=70.0
Q ss_pred CCcEEEEEeCCCcEEEEECCC-------CcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC-------cE
Q 004404 577 KSQHLLSSSMDKTVRLWHLSS-------KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-------QV 642 (755)
Q Consensus 577 pd~~LaSgs~DgtVrLWDl~t-------~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~-------~~ 642 (755)
++.+|+..+..|.++...+.. |.....+...+.+..+.... +...++..+..|.+..+.+..- +=
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G 191 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQG 191 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCC
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCC
Confidence 357889999999999988743 22222233456676666654 5667888999999999976431 11
Q ss_pred EEecc--CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 004404 643 VDWND--LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (755)
Q Consensus 643 v~~~~--~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~ 681 (755)
+.... ....|.++..-.++..|++.+..|..+...+..-
T Consensus 192 v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 192 VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 22222 2456777766666778889999999999888643
No 335
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=77.78 E-value=89 Score=34.40 Aligned_cols=190 Identities=11% Similarity=0.137 Sum_probs=109.1
Q ss_pred eeeecCCCce-EEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCC-CcEEEEee-----cCCceEEEEEeeCCCcEE
Q 004404 551 TVFALSDKPI-CSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFS-----HSDYVTCIQFNPVDDRYF 623 (755)
Q Consensus 551 ~v~~~s~k~i-~~l~gH~~~V~~L~~spd~~LaSgs~DgtVrLWDl~t-~~~~~~~~-----h~~~VtsVafsP~dg~~L 623 (755)
.+|++..+.. ..+. ...+|.--.|-....|+-.+ +..|+-|++.. ..+.+.|. ....|..-..++ +.+++
T Consensus 89 QiFnle~K~klks~~-~~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~ 165 (494)
T 1bpo_A 89 QIFNIEMKSKMKAHT-MTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWL 165 (494)
T ss_dssp EEEETTTTEEEEEEE-CSSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEE
T ss_pred EEEchHHhhhhccee-cCCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeE
Confidence 4566654433 3333 23467777777666665554 46799999974 46777775 245677777888 78877
Q ss_pred EEEEC-------CCcEEEEECCCCcEEEeccCCCCEEEEEEccCC---CEEEEEEC---CCcEEEEECCCCe-eeeccc-
Q 004404 624 ISGSL-------DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG---QGALVGSY---KGSCHLYNTSENK-LQQKSP- 688 (755)
Q Consensus 624 aSgS~-------DgtVrIWDl~t~~~v~~~~~~~~VtsvafSPdG---~~LasGs~---DG~I~lwDl~~~~-~~~~~~- 688 (755)
+..+. .|.+.+|.+..+......+|-.....+.+.-+. +.++.+.. .+.++|-++.... -...++
T Consensus 166 ~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k 245 (494)
T 1bpo_A 166 LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 245 (494)
T ss_dssp EEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC
T ss_pred EEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc
Confidence 65432 477899998877655554443333222222111 23333333 2789999985430 001110
Q ss_pred --cccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE--CCcceEEeecCCccEE
Q 004404 689 --INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGENYVQY 745 (755)
Q Consensus 689 --i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD--~~~ll~~~~GH~~~V~ 745 (755)
..+... ......--.++..++.-. .+..-+.-|.|.+|| ++.++..-+--.+.|.
T Consensus 246 k~vdv~fp-pe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nrIs~~~iF 304 (494)
T 1bpo_A 246 KAVDVFFP-PEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (494)
T ss_dssp EEEECCCC-TTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred eeeeeeCC-cccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeecccCCceE
Confidence 011000 112344556778888766 788889999999999 5555554443344443
No 336
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=77.38 E-value=90 Score=34.27 Aligned_cols=30 Identities=13% Similarity=-0.002 Sum_probs=23.2
Q ss_pred CCEEEEEEcCCCC-EEEEEECCCcEEEEeCc
Q 004404 457 GSIWSIKFSLDGR-YLASAGEDCVIHVWQVV 486 (755)
Q Consensus 457 ~~I~sI~fSpdg~-~LaTgs~DGtVrVWdl~ 486 (755)
..-+.|+|.|||. .|+.+...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4578999999996 45555688999999753
No 337
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=77.31 E-value=70 Score=32.98 Aligned_cols=151 Identities=9% Similarity=0.053 Sum_probs=86.9
Q ss_pred CCcEEEEEeCCCcEEEEECCCC-----cEEEE--eecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC-------cE
Q 004404 577 KSQHLLSSSMDKTVRLWHLSSK-----TCLKI--FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-------QV 642 (755)
Q Consensus 577 pd~~LaSgs~DgtVrLWDl~t~-----~~~~~--~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~-------~~ 642 (755)
++.+++..+..|.++-..+..- .-+.. +...+.+..+.... +...++..+..|.+..+....- +-
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~-~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G 186 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTS-GEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 186 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeC-CCCEEEEECCCCcEEEEEHHHcCccCCCCCC
Confidence 3467999999999999876421 12222 22336666665554 5567788888999888876331 11
Q ss_pred EEe--ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEE
Q 004404 643 VDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (755)
Q Consensus 643 v~~--~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs 720 (755)
+.. ....+.|.++...+++..|++.+..|.++-.++..-.....-..-....++..-.+.+..+....+.. .++..+
T Consensus 187 v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~-~l~~~t 265 (307)
T 1zi0_A 187 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD-QIMMIT 265 (307)
T ss_dssp EECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTC-EEEEEE
T ss_pred eEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCc-eEEEEc
Confidence 121 22335677776656667889999999998887743221111000000111222234565555443334 566777
Q ss_pred CCCcEEEEE
Q 004404 721 ADSRIRVVD 729 (755)
Q Consensus 721 ~Dg~IrVWD 729 (755)
.+|.+.-+.
T Consensus 266 ~~g~~ir~~ 274 (307)
T 1zi0_A 266 DAGTLVRTR 274 (307)
T ss_dssp SSCCEEEEE
T ss_pred CCCcEEEEe
Confidence 777766666
No 338
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=76.33 E-value=78 Score=33.03 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=90.2
Q ss_pred CcEEEEEeCCCcEEEEECCCC-------cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECC--CCcE------
Q 004404 578 SQHLLSSSMDKTVRLWHLSSK-------TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP--ERQV------ 642 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t~-------~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~--t~~~------ 642 (755)
+.+++..+..|.|+--.+... .....+...+.+..+.... ....|+..+..|.+..+.+. .-..
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 478999999999999876532 1112233456666666555 56778888999998888776 3111
Q ss_pred -EEec--cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEE
Q 004404 643 -VDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (755)
Q Consensus 643 -v~~~--~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sg 719 (755)
+... .....|.++...+.+.+|+..+..|.++.-.+..-.....-..-....++..-...+..+....+.. .++..
T Consensus 188 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~-~i~l~ 266 (327)
T 3uc1_A 188 GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDS-ELYAV 266 (327)
T ss_dssp CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTC-EEEEE
T ss_pred CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCc-cEEEE
Confidence 1111 2345677777777777999999999998887654333211000000011112133455555444444 57777
Q ss_pred ECCCcEEEEE
Q 004404 720 SADSRIRVVD 729 (755)
Q Consensus 720 s~Dg~IrVWD 729 (755)
+.+|.+.-++
T Consensus 267 T~~G~~ir~~ 276 (327)
T 3uc1_A 267 TSGGGVIRTA 276 (327)
T ss_dssp EGGGCEEEEE
T ss_pred cCCCeEEEEe
Confidence 7777776665
No 339
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=74.31 E-value=27 Score=35.14 Aligned_cols=139 Identities=13% Similarity=0.169 Sum_probs=74.9
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCC-----cEEEEECCCCcEEEe
Q 004404 578 SQHLLSSSMD-----KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPERQVVDW 645 (755)
Q Consensus 578 d~~LaSgs~D-----gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~Dg-----tVrIWDl~t~~~v~~ 645 (755)
+..++.|+.+ ..+.+||..+.+-...-. ....-.+++.. ++.+++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 3455566544 358899988775443322 11111222222 567777777653 578899988765544
Q ss_pred ccCCC---CEEEEEEccCCCEEEEEECC-------CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeE
Q 004404 646 NDLHE---MVTAACYTPDGQGALVGSYK-------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (755)
Q Consensus 646 ~~~~~---~VtsvafSPdG~~LasGs~D-------G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~ 715 (755)
..... ....+.+ +++.++.|+.+ ..+.+||+.+.+-......+ .....| ..+.+ ++. +
T Consensus 140 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~----~~~~~--~~~-i 207 (302)
T 2xn4_A 140 APMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS---TRRSGA----GVGVL--NNL-L 207 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS---SCCBSC----EEEEE--TTE-E
T ss_pred CCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc---cccccc----cEEEE--CCE-E
Confidence 33222 1222222 56677776542 45899999887655432211 111122 22222 343 6
Q ss_pred EEEEECC-----CcEEEEEC
Q 004404 716 VLVTSAD-----SRIRVVDG 730 (755)
Q Consensus 716 L~sgs~D-----g~IrVWD~ 730 (755)
++.|+.+ ..+.+||.
T Consensus 208 yv~GG~~~~~~~~~~~~yd~ 227 (302)
T 2xn4_A 208 YAVGGHDGPLVRKSVEVYDP 227 (302)
T ss_dssp EEECCBSSSSBCCCEEEEET
T ss_pred EEECCCCCCcccceEEEEeC
Confidence 6677654 36888883
No 340
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=71.66 E-value=90 Score=31.63 Aligned_cols=148 Identities=14% Similarity=0.086 Sum_probs=89.4
Q ss_pred CCcEEEEEeCCCcEEEEECCCC------cEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC-------cEE
Q 004404 577 KSQHLLSSSMDKTVRLWHLSSK------TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-------QVV 643 (755)
Q Consensus 577 pd~~LaSgs~DgtVrLWDl~t~------~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~-------~~v 643 (755)
++..++..+.+|.|+-..+..- .....+...+.+..+.... +...++..+..|.+..+....- .=+
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv 157 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGV 157 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE
Confidence 3478899999999999876542 1122233456676666665 5667888899999888875321 111
Q ss_pred Ee--ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 644 DW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 644 ~~--~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
.. ....+.|.++...+++.+|+..+..|.++...+..-.....-..-. ..+ ...+.+..+....+.. .++..+.
T Consensus 158 ~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv--~~i-~~~~~lv~~~~~~~~~-~i~~~t~ 233 (276)
T 3no0_A 158 QGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGT--EVS-GTKDTLVDLIPIKEEV-ELLITTK 233 (276)
T ss_dssp ECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCE--ECC-CSSSCEEEEEEESSEE-EEEEEET
T ss_pred EEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcce--EEE-cCCCcEEEEEEeCCCC-EEEEEcC
Confidence 11 2223567777666667799999999999988876433322110000 001 1233455554433333 6777788
Q ss_pred CCcEEE--EE
Q 004404 722 DSRIRV--VD 729 (755)
Q Consensus 722 Dg~IrV--WD 729 (755)
+|.+.. ++
T Consensus 234 ~G~~ir~~~~ 243 (276)
T 3no0_A 234 NGKAFYDKIN 243 (276)
T ss_dssp TSCEEEEEEE
T ss_pred CCeEEEeeeC
Confidence 888777 76
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=71.12 E-value=97 Score=31.77 Aligned_cols=96 Identities=7% Similarity=-0.040 Sum_probs=47.5
Q ss_pred CcEEEEECCCCcEEEEee--cCCce-EEEEEeeCCCcEEEEEEC------CCcEEEEEC--CCCcEEEeccCCC---CEE
Q 004404 588 KTVRLWHLSSKTCLKIFS--HSDYV-TCIQFNPVDDRYFISGSL------DAKVRIWSI--PERQVVDWNDLHE---MVT 653 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~--h~~~V-tsVafsP~dg~~LaSgS~------DgtVrIWDl--~t~~~v~~~~~~~---~Vt 653 (755)
..+.+||..+.+-...-. ....- .+++.. ++.+++.|+. ...+.+||+ .+.+-........ ...
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 578899988765433322 22222 233333 5677777654 345777877 5444333222211 111
Q ss_pred EEEEccCCCEEEEEECC----------------------CcEEEEECCCCeeee
Q 004404 654 AACYTPDGQGALVGSYK----------------------GSCHLYNTSENKLQQ 685 (755)
Q Consensus 654 svafSPdG~~LasGs~D----------------------G~I~lwDl~~~~~~~ 685 (755)
..+...++++++.|+.+ ..+.+||+.+.+-..
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~ 299 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK 299 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee
Confidence 11223356777777632 257899998776543
No 342
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=70.42 E-value=91 Score=32.77 Aligned_cols=159 Identities=8% Similarity=-0.054 Sum_probs=77.6
Q ss_pred CCEEEEEecC--CcEEEEEeCCC----cEEEEECCCCcEEEEee---------------cCCceEEEEEeeCC-CcEEEE
Q 004404 568 DDVLDLSWSK--SQHLLSSSMDK----TVRLWHLSSKTCLKIFS---------------HSDYVTCIQFNPVD-DRYFIS 625 (755)
Q Consensus 568 ~~V~~L~~sp--d~~LaSgs~Dg----tVrLWDl~t~~~~~~~~---------------h~~~VtsVafsP~d-g~~LaS 625 (755)
..|.+|++.| .+.|+.+...+ .|...+ ..++.-..+. ....|.+|++.|.+ ...|+.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 3588999988 46666666555 444432 2232222221 11257889998743 456666
Q ss_pred EECCCcEEEEECCCCcEEEecc-------------------CCCCEEEEEEccC-CCEEEEEECCCcEEEEECCCCeeee
Q 004404 626 GSLDAKVRIWSIPERQVVDWND-------------------LHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQ 685 (755)
Q Consensus 626 gS~DgtVrIWDl~t~~~v~~~~-------------------~~~~VtsvafSPd-G~~LasGs~DG~I~lwDl~~~~~~~ 685 (755)
+...+.|...+=....-..... ....+.+|.+.|. ...|+++..++.|+..+-. ++.-.
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~ 212 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWK 212 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCE
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCce
Confidence 6666655544322112111110 1235789999983 4556666555555444222 22111
Q ss_pred cccccccccccc----CCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 686 KSPINLQNKKKR----SHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 686 ~~~i~~~~~~~~----~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
.....+....+. .-...|..|.+.|..+..|+++...+ |...+
T Consensus 213 ~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 213 PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 110000000000 00135889999987433677776554 44443
No 343
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=70.18 E-value=44 Score=33.63 Aligned_cols=105 Identities=8% Similarity=0.107 Sum_probs=61.1
Q ss_pred CcEEEEEeCC----CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECC------CcEEEEECCCCcEEEe
Q 004404 578 SQHLLSSSMD----KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVDW 645 (755)
Q Consensus 578 d~~LaSgs~D----gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~D------gtVrIWDl~t~~~v~~ 645 (755)
+..++.|+.+ ..+.+||..+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||..+.+-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 3455666644 678899988875443322 11111222222 66777777765 4589999988765544
Q ss_pred ccCCC---CEEEEEEccCCCEEEEEEC---------CCcEEEEECCCCeeeec
Q 004404 646 NDLHE---MVTAACYTPDGQGALVGSY---------KGSCHLYNTSENKLQQK 686 (755)
Q Consensus 646 ~~~~~---~VtsvafSPdG~~LasGs~---------DG~I~lwDl~~~~~~~~ 686 (755)
..... ....+. -++++++.|+. -..+.+||+.+.+-...
T Consensus 134 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~ 184 (306)
T 3ii7_A 134 PSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL 184 (306)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEE
T ss_pred CCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEEC
Confidence 32221 122222 25667777653 34589999998865543
No 344
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=69.54 E-value=28 Score=35.32 Aligned_cols=95 Identities=7% Similarity=0.062 Sum_probs=55.6
Q ss_pred CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECC-----CcEEEEECCCCcEEEeccCCC---CEEEEEE
Q 004404 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQVVDWNDLHE---MVTAACY 657 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~D-----gtVrIWDl~t~~~v~~~~~~~---~Vtsvaf 657 (755)
..+.+||+.+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-........ ....+.+
T Consensus 137 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 214 (308)
T 1zgk_A 137 NSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL 214 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE
Confidence 468889988765433322 11111222222 56777777654 458999998876554332221 2223333
Q ss_pred ccCCCEEEEEECC-----CcEEEEECCCCeeeec
Q 004404 658 TPDGQGALVGSYK-----GSCHLYNTSENKLQQK 686 (755)
Q Consensus 658 SPdG~~LasGs~D-----G~I~lwDl~~~~~~~~ 686 (755)
++++++.|+.+ ..+.+||+.+.+-...
T Consensus 215 --~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 215 --HNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp --TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred --CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 67777777664 5699999998876543
No 345
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=69.46 E-value=54 Score=33.24 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=58.7
Q ss_pred CcEEEEEeCC-------CcEEEEECCCCcEEEEeecCCc--eEEEEEeeCCCcEEEEEEC------CCcEEEEECCCCcE
Q 004404 578 SQHLLSSSMD-------KTVRLWHLSSKTCLKIFSHSDY--VTCIQFNPVDDRYFISGSL------DAKVRIWSIPERQV 642 (755)
Q Consensus 578 d~~LaSgs~D-------gtVrLWDl~t~~~~~~~~h~~~--VtsVafsP~dg~~LaSgS~------DgtVrIWDl~t~~~ 642 (755)
+..++.|+.+ ..+.+||..+.+-...-....+ -.+++. . ++.+++.|+. -..+.+||+.+.+-
T Consensus 110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 4556666653 3588889887654433221111 112222 2 6777777764 23589999988765
Q ss_pred EEeccCCC---CEEEEEEccCCCEEEEEECC-----CcEEEEECCCCeeee
Q 004404 643 VDWNDLHE---MVTAACYTPDGQGALVGSYK-----GSCHLYNTSENKLQQ 685 (755)
Q Consensus 643 v~~~~~~~---~VtsvafSPdG~~LasGs~D-----G~I~lwDl~~~~~~~ 685 (755)
........ ....+.+ +++.++.|+.+ ..+.+||+.+.+-..
T Consensus 188 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 188 KDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236 (318)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred EECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence 54432221 1222222 56777777653 357889998876554
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=67.82 E-value=83 Score=39.77 Aligned_cols=194 Identities=11% Similarity=0.123 Sum_probs=100.1
Q ss_pred EcCCCCEEEEEECCCcEEEEeCcCCceeeeeecccccCccccEEEeecCCC-CceeccccCCCceeeecccccccccccc
Q 004404 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLS 542 (755)
Q Consensus 464 fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l~~~~~~~~~~~v~~v~~s~d-g~~l~~~s~d~~i~~~~~~~~~~~~s~s 542 (755)
.+|..+.||-=. ..++.|+|+++..++.... - ...+..-.|-.. ...+++...-.+ |...
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~-----~-~e~VvfWkWis~~~l~lVT~~aVyH---W~~~--------- 133 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-----M-TDDVTFWKWISLNTVALVTDNAVYH---WSME--------- 133 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccc-----c-CCCceEEEecCCCeeEEEcCCeEEE---eccC---------
Confidence 566666555544 5789999998877665542 1 123333344333 333333221111 1110
Q ss_pred cCcccccceeeecCCCceEEeccC----CCCEEEEEecCC-cEEE-EE------eCCCcEEEEECCCCcEEEEeecCCce
Q 004404 543 LDHMVVPETVFALSDKPICSFQGH----LDDVLDLSWSKS-QHLL-SS------SMDKTVRLWHLSSKTCLKIFSHSDYV 610 (755)
Q Consensus 543 ~d~~~~~~~v~~~s~k~i~~l~gH----~~~V~~L~~spd-~~La-Sg------s~DgtVrLWDl~t~~~~~~~~h~~~V 610 (755)
. ...|++.|.-| ...|..-..+++ ..++ +| ...|.+.||.+..+.....-+|....
T Consensus 134 --~----------~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F 201 (1630)
T 1xi4_A 134 --G----------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASF 201 (1630)
T ss_pred --C----------CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhh
Confidence 0 11233333333 234555555565 3333 22 23588999998765433222233322
Q ss_pred EEEEEe--eCCCcEEEEEEC---CCcEEEEECCCC---c------EEEe-ccC---CCCEEEEEEccCCCEEEEEECCCc
Q 004404 611 TCIQFN--PVDDRYFISGSL---DAKVRIWSIPER---Q------VVDW-NDL---HEMVTAACYTPDGQGALVGSYKGS 672 (755)
Q Consensus 611 tsVafs--P~dg~~LaSgS~---DgtVrIWDl~t~---~------~v~~-~~~---~~~VtsvafSPdG~~LasGs~DG~ 672 (755)
..+... +....+|+.+.. .++++|-++... . .+.. +.. ..-..++..++.-..+..-+.-|.
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~ 281 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY 281 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce
Confidence 222211 101112222211 268899888442 1 1111 111 234567888888788899999999
Q ss_pred EEEEECCCCeeeeccc
Q 004404 673 CHLYNTSENKLQQKSP 688 (755)
Q Consensus 673 I~lwDl~~~~~~~~~~ 688 (755)
|++||+.++..+..-.
T Consensus 282 ~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 282 IHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEEEecccchhhhhcc
Confidence 9999999998876543
No 347
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=67.27 E-value=54 Score=33.21 Aligned_cols=127 Identities=7% Similarity=0.026 Sum_probs=67.1
Q ss_pred EEEEECCCCcEEEEeecCCc--eEEEEEeeCCCcEEEEEECC--------CcEEEEECCCCcEEEeccCCC---CEEEEE
Q 004404 590 VRLWHLSSKTCLKIFSHSDY--VTCIQFNPVDDRYFISGSLD--------AKVRIWSIPERQVVDWNDLHE---MVTAAC 656 (755)
Q Consensus 590 VrLWDl~t~~~~~~~~h~~~--VtsVafsP~dg~~LaSgS~D--------gtVrIWDl~t~~~v~~~~~~~---~Vtsva 656 (755)
+.+||..+.+-...-....+ -.+++.. ++.+++.|+.+ ..+.+||..+.+-........ ....+.
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 77888887654332111111 1122222 56777777642 458999998876544332221 122222
Q ss_pred EccCCCEEEEEEC-C-----CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCC-----cE
Q 004404 657 YTPDGQGALVGSY-K-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS-----RI 725 (755)
Q Consensus 657 fSPdG~~LasGs~-D-----G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg-----~I 725 (755)
-+++.++.|+. + ..+.+||+.+.+-......+ .....| ..+.+ ++. +++.|+.++ .+
T Consensus 147 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~----~~~~~--~~~-iyv~GG~~~~~~~~~~ 214 (315)
T 4asc_A 147 --HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ---TARSLF----GATVH--DGR-IIVAAGVTDTGLTSSA 214 (315)
T ss_dssp --ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS---SCCBSC----EEEEE--TTE-EEEEEEECSSSEEEEE
T ss_pred --ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC---Cchhce----EEEEE--CCE-EEEEeccCCCCccceE
Confidence 35667777765 2 46899999987655432211 011112 12222 444 677776554 47
Q ss_pred EEEEC
Q 004404 726 RVVDG 730 (755)
Q Consensus 726 rVWD~ 730 (755)
.+||.
T Consensus 215 ~~yd~ 219 (315)
T 4asc_A 215 EVYSI 219 (315)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 78883
No 348
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=66.92 E-value=41 Score=34.01 Aligned_cols=129 Identities=10% Similarity=0.051 Sum_probs=69.5
Q ss_pred CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECC-----CcEEEEECCCCcEEEeccCCC---CEEEEEE
Q 004404 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQVVDWNDLHE---MVTAACY 657 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~D-----gtVrIWDl~t~~~v~~~~~~~---~Vtsvaf 657 (755)
..+.+||+.+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-........ ....+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 468889988765433221 11111122222 56777776643 358899998876554432221 2223333
Q ss_pred ccCCCEEEEEECC-----CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECC-----CcEEE
Q 004404 658 TPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-----SRIRV 727 (755)
Q Consensus 658 SPdG~~LasGs~D-----G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~D-----g~IrV 727 (755)
++++++.|+.+ ..+.+||+.+.+-....... .....| ..+.+ ++. +++.|+.+ ..|.+
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~----~~~~~--~~~-iyv~GG~~~~~~~~~v~~ 235 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN---TIRSGA----GVCVL--HNC-IYAAGGYDGQDQLNSVER 235 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS---SCCBSC----EEEEE--TTE-EEEECCBCSSSBCCCEEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC---Cccccc----eEEEE--CCE-EEEEeCCCCCCccceEEE
Confidence 57777777654 45899999887655432211 011112 22222 343 66666654 46888
Q ss_pred EEC
Q 004404 728 VDG 730 (755)
Q Consensus 728 WD~ 730 (755)
||.
T Consensus 236 yd~ 238 (308)
T 1zgk_A 236 YDV 238 (308)
T ss_dssp EET
T ss_pred EeC
Confidence 883
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.43 E-value=52 Score=39.81 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=34.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccc
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~ 688 (755)
..+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357788888889999999999999999999999887654
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=64.76 E-value=1.4e+02 Score=31.23 Aligned_cols=180 Identities=12% Similarity=0.025 Sum_probs=87.7
Q ss_pred CCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEeec--------------CCceEEEEEeeCCCcEEEEEECCCc
Q 004404 568 DDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSH--------------SDYVTCIQFNPVDDRYFISGSLDAK 631 (755)
Q Consensus 568 ~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~h--------------~~~VtsVafsP~dg~~LaSgS~Dgt 631 (755)
..|.+|.+.|. +.|+.+..++.|...+ ..++.-..+.. ...+.+|.++|.+...|+.+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 35788888873 5566565555444432 22322222211 124899999984456777776544
Q ss_pred EEEEECCCCcEEEecc-CC----CCEEEEEEcc-CCCEEEEEEC-----------CCcEEEEECCCC-eeeecccccccc
Q 004404 632 VRIWSIPERQVVDWND-LH----EMVTAACYTP-DGQGALVGSY-----------KGSCHLYNTSEN-KLQQKSPINLQN 693 (755)
Q Consensus 632 VrIWDl~t~~~v~~~~-~~----~~VtsvafSP-dG~~LasGs~-----------DG~I~lwDl~~~-~~~~~~~i~~~~ 693 (755)
|...+-.......... .. ..+..++++| +...|+++.. ++...||...++ +.-..+...++.
T Consensus 255 l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~ 334 (394)
T 3b7f_A 255 IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT 334 (394)
T ss_dssp EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred EEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence 4444322222222111 12 3467788887 3445555542 333456655543 221111100100
Q ss_pred ccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE-CCcceEEeecCCccEEEEEEE
Q 004404 694 KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-GIDLVHKFKGENYVQYMVCIV 750 (755)
Q Consensus 694 ~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD-~~~ll~~~~GH~~~V~sv~fs 750 (755)
... ........+++.|..+..|++++.++.|..-+ .++--..+..+-..++++.|.
T Consensus 335 ~~~-~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 335 DQA-WLTVKRQAMTADAHAPVGVYFGTTGGEIWASADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp SSC-CCCCCTBSEEECCSSSCCEEEECTTSCEEEESSTTSBCEEEECSCSCEEEEEEE
T ss_pred ccc-cceEEEEEEEECCCCCCEEEEEeCCCeEEEECCCCCCceEcccCCCCeeEEEEe
Confidence 000 00001235778876443577777677666544 444444455554557777664
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=63.63 E-value=1.4e+02 Score=30.64 Aligned_cols=102 Identities=12% Similarity=0.039 Sum_probs=59.6
Q ss_pred EecCC-cEEEEEe----CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEEC-CCcEEEEECCCCcEEEecc
Q 004404 574 SWSKS-QHLLSSS----MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPERQVVDWND 647 (755)
Q Consensus 574 ~~spd-~~LaSgs----~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~-DgtVrIWDl~t~~~v~~~~ 647 (755)
.|+++ ++|+-.. ....|+..++......+...+.. ..|+| +++.|+-.+. ..+|.+-++..+....+..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~ 184 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNT-SDRYFYYNNPKNGQLYRYDTASQSEALFYD 184 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEE-ETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeE-ECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence 44554 5555554 34456666666444333333332 45677 6777775554 5778888887766554433
Q ss_pred CCCCEEEEEEccCCCEEEEEECC--CcEEEEECCCCee
Q 004404 648 LHEMVTAACYTPDGQGALVGSYK--GSCHLYNTSENKL 683 (755)
Q Consensus 648 ~~~~VtsvafSPdG~~LasGs~D--G~I~lwDl~~~~~ 683 (755)
.... ..+.|++.+|+-.... ..|..-++.....
T Consensus 185 --~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~ 219 (302)
T 3s25_A 185 --CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP 219 (302)
T ss_dssp --SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC
T ss_pred --CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe
Confidence 2232 3466999888876654 3566666666553
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=63.48 E-value=7.4 Score=44.07 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=63.9
Q ss_pred cEEEEECCC----C-cEEEEeecCCceEEEEEeeCCCcEEEEE-ECCCcEEEEECCCC------c-------EEEeccCC
Q 004404 589 TVRLWHLSS----K-TCLKIFSHSDYVTCIQFNPVDDRYFISG-SLDAKVRIWSIPER------Q-------VVDWNDLH 649 (755)
Q Consensus 589 tVrLWDl~t----~-~~~~~~~h~~~VtsVafsP~dg~~LaSg-S~DgtVrIWDl~t~------~-------~v~~~~~~ 649 (755)
.|.+.|.+. + ..+..+.-......+.++| ||++++.+ -.+.+|.++|+..- + ++......
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 478888776 3 3444445566667889999 88877765 45889999998741 1 13333445
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 004404 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (755)
Q Consensus 650 ~~VtsvafSPdG~~LasGs~DG~I~lwDl~~ 680 (755)
-...-.+|.++|....+--.|..|..|++..
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 5788899999994444455799999999975
No 353
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=61.23 E-value=65 Score=32.60 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=53.0
Q ss_pred EEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECC-------CcEEEEECCCCcEEEeccCCCCEE--EEEEc
Q 004404 590 VRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-------AKVRIWSIPERQVVDWNDLHEMVT--AACYT 658 (755)
Q Consensus 590 VrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~D-------gtVrIWDl~t~~~v~~~~~~~~Vt--svafS 658 (755)
+.+||..+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-........... +++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS- 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-
Confidence 7788887765433221 11111222222 56777777754 348889998876554433332211 1222
Q ss_pred cCCCEEEEEEC------CCcEEEEECCCCeeeec
Q 004404 659 PDGQGALVGSY------KGSCHLYNTSENKLQQK 686 (755)
Q Consensus 659 PdG~~LasGs~------DG~I~lwDl~~~~~~~~ 686 (755)
.+++.++.|+. -..+.+||+.+.+-...
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~ 190 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL 190 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC
Confidence 46777777654 24589999998875543
No 354
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=54.47 E-value=1.4e+02 Score=30.52 Aligned_cols=94 Identities=9% Similarity=0.069 Sum_probs=50.8
Q ss_pred CcEEEEECCCCcEEEEee---cCCceEEEEEeeCCCcEEEEEECC-----------------------------------
Q 004404 588 KTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLD----------------------------------- 629 (755)
Q Consensus 588 gtVrLWDl~t~~~~~~~~---h~~~VtsVafsP~dg~~LaSgS~D----------------------------------- 629 (755)
..+.+||+.+.+-...-. ....-.+++. . ++++++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 468899988765433222 1111122222 3 67888888765
Q ss_pred ----CcEEEEECCCCcEEEeccCCC--CE-EEEEEccCCCEEEEEEC------CCcEEEEEC--CCCeee
Q 004404 630 ----AKVRIWSIPERQVVDWNDLHE--MV-TAACYTPDGQGALVGSY------KGSCHLYNT--SENKLQ 684 (755)
Q Consensus 630 ----gtVrIWDl~t~~~v~~~~~~~--~V-tsvafSPdG~~LasGs~------DG~I~lwDl--~~~~~~ 684 (755)
..+.+||+.+.+-........ .. .+++. -++++++.|+. ...+.+||+ .+..-.
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~ 232 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN 232 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEE
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEE
Confidence 478999998876543322221 11 22222 25666677653 345777887 444433
No 355
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=52.83 E-value=1.1e+02 Score=35.45 Aligned_cols=104 Identities=15% Similarity=0.252 Sum_probs=62.5
Q ss_pred CcEEEEEeCC------CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEECCC--cEEEEECCCCcEEEecc
Q 004404 578 SQHLLSSSMD------KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIPERQVVDWND 647 (755)
Q Consensus 578 d~~LaSgs~D------gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS~Dg--tVrIWDl~t~~~v~~~~ 647 (755)
+..++.|+.+ ..+.+||..+.+-...-. ....-.+++... ++.+++.|+.++ .+.+||+.+..-.....
T Consensus 452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 3556666643 358889988764433221 222222333323 678888887655 69999998876554332
Q ss_pred ------CCCCEEEEEEccC-CCEEEEEEC--C-----CcEEEEECCCCe
Q 004404 648 ------LHEMVTAACYTPD-GQGALVGSY--K-----GSCHLYNTSENK 682 (755)
Q Consensus 648 ------~~~~VtsvafSPd-G~~LasGs~--D-----G~I~lwDl~~~~ 682 (755)
......++++..+ ++.++.|+. + ..+.+||+.+..
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1223344666665 667777765 2 458999998877
No 356
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=51.18 E-value=2.3e+02 Score=29.40 Aligned_cols=153 Identities=10% Similarity=0.040 Sum_probs=79.7
Q ss_pred CEEEEE-ecCCcEEEEEeCCCcEEEEECC--C---------CcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEE
Q 004404 569 DVLDLS-WSKSQHLLSSSMDKTVRLWHLS--S---------KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636 (755)
Q Consensus 569 ~V~~L~-~spd~~LaSgs~DgtVrLWDl~--t---------~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWD 636 (755)
.+..+. ......|+..+..|.+..+... . |.....+.....|.++...+ .+.+|+..+..|.++.-.
T Consensus 147 ~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 147 ELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEE
T ss_pred EEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEE
Confidence 344333 3344778888888988888766 2 11111233566788777766 667899999999999887
Q ss_pred CCCC-------cEEEeccC---CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEE
Q 004404 637 IPER-------QVVDWNDL---HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (755)
Q Consensus 637 l~t~-------~~v~~~~~---~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (755)
+..- +-+..... ...+..+....+...++..+.+|.+.-++...-........-.....+ .....|.++
T Consensus 226 l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l-~~~d~vv~~ 304 (327)
T 3uc1_A 226 IEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNL-GEGDTLLAI 304 (327)
T ss_dssp GGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTC-CTTCCEEEE
T ss_pred HHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEec-CCCCEEEEE
Confidence 5331 11222221 334555555555567777888888888877543332221100111111 224567777
Q ss_pred EEccCCCeEEEEEECCC
Q 004404 707 QFAPGSSSEVLVTSADS 723 (755)
Q Consensus 707 ~fsPdg~~~L~sgs~Dg 723 (755)
...+.....+++.+.+|
T Consensus 305 ~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 305 ARNAEESGDDNAVDANG 321 (327)
T ss_dssp EECC-------------
T ss_pred EEcCCCcceEEEEecCC
Confidence 66554333455555443
No 357
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=48.07 E-value=2.5e+02 Score=28.99 Aligned_cols=150 Identities=12% Similarity=0.142 Sum_probs=84.1
Q ss_pred CcEEEEEeCCCcEEEEECCC------CcEEEE--eecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCC-------cE
Q 004404 578 SQHLLSSSMDKTVRLWHLSS------KTCLKI--FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-------QV 642 (755)
Q Consensus 578 d~~LaSgs~DgtVrLWDl~t------~~~~~~--~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~-------~~ 642 (755)
+.+|+..+..|.++...+.. +.-+.. +...+.+..+.... ..+.|+..+.+|.+..+....- +-
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~-~~~~i~l~T~~G~~irf~~~ev~~~gR~a~G 184 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTD-GMNELFLVTHNGYALWFDESEVSIVGVRAAG 184 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEEC-SCSEEEEEETTSEEEEEEGGGSCBCCSSCCC
T ss_pred CceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHCcccCCCCcC
Confidence 46799999999999987642 122222 23446666665554 5667888899999988876331 11
Q ss_pred EEecc--CCCCEEEEEEccCCC-EEEEEECCCcEEEEECCCCeeeecccccccc-ccccCCCCCeEEEEEccCCCeEEEE
Q 004404 643 VDWND--LHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPINLQN-KKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 643 v~~~~--~~~~VtsvafSPdG~-~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~-~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
+.... ....|.++..-+++. .|++.+..|..+..++..-.....-..-... +.++.....+..+....++. .++.
T Consensus 185 V~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~-~i~~ 263 (323)
T 1wp5_A 185 VKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSD-TIYL 263 (323)
T ss_dssp EECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTC-EEEE
T ss_pred EEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCC-eEEE
Confidence 22222 234566665544455 7888899999888777542221110000000 01112222455443333333 4667
Q ss_pred EECCCcEEEEE
Q 004404 719 TSADSRIRVVD 729 (755)
Q Consensus 719 gs~Dg~IrVWD 729 (755)
.+..|.+....
T Consensus 264 it~~g~~ir~~ 274 (323)
T 1wp5_A 264 QTEKSFIETIK 274 (323)
T ss_dssp EETTSCEEEEE
T ss_pred EeCCCeEEEEE
Confidence 77777766655
No 358
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=46.97 E-value=56 Score=37.09 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=77.6
Q ss_pred CCEEEEEecCCc-EEEE-EeCCCcEEEEECCC------Cc-------EEEEeecCCceEEEEEeeCCCcEEEEEECCCcE
Q 004404 568 DDVLDLSWSKSQ-HLLS-SSMDKTVRLWHLSS------KT-------CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKV 632 (755)
Q Consensus 568 ~~V~~L~~spd~-~LaS-gs~DgtVrLWDl~t------~~-------~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtV 632 (755)
.....+..+|++ +++. +--+.+|.++|+.. ++ ........-.....+|.+ +|....+...|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceE
Confidence 345567889984 4443 44588999999873 11 122233445567789999 88777777899999
Q ss_pred EEEECCCC----------cEEEeccCCCCEEEEEE------ccCCCEEEEEEC---CCc----------EEEEECCCCe
Q 004404 633 RIWSIPER----------QVVDWNDLHEMVTAACY------TPDGQGALVGSY---KGS----------CHLYNTSENK 682 (755)
Q Consensus 633 rIWDl~t~----------~~v~~~~~~~~Vtsvaf------SPdG~~LasGs~---DG~----------I~lwDl~~~~ 682 (755)
.-|++... .++.....+..+--+.- .|+|++|++... |.. -.|+|+...+
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 99998653 45666666766666655 678999999653 443 3788886554
No 359
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=46.35 E-value=1.6e+02 Score=34.01 Aligned_cols=147 Identities=14% Similarity=0.252 Sum_probs=78.7
Q ss_pred CcEEEEEeCC----CcEEEEECCCCcEEEEe-e-------cCC-ceEEEEEeeCCCcEEEEEECC------CcEEEEECC
Q 004404 578 SQHLLSSSMD----KTVRLWHLSSKTCLKIF-S-------HSD-YVTCIQFNPVDDRYFISGSLD------AKVRIWSIP 638 (755)
Q Consensus 578 d~~LaSgs~D----gtVrLWDl~t~~~~~~~-~-------h~~-~VtsVafsP~dg~~LaSgS~D------gtVrIWDl~ 638 (755)
+..++.|+.+ ..+.+||..+.+-...- . ... .-..+.+.. ++.+++.|+.+ ..+.+||..
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCC
Confidence 4556666643 46888888876544332 1 111 122333322 45677777644 348899998
Q ss_pred CCcEEEeccCCC--CEEEEEEccCCCEEEEEECCC--cEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCe
Q 004404 639 ERQVVDWNDLHE--MVTAACYTPDGQGALVGSYKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (755)
Q Consensus 639 t~~~v~~~~~~~--~VtsvafSPdG~~LasGs~DG--~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~ 714 (755)
+.+-........ .-.+++.-.+++.++.|+.++ .+.+||+.+..-..............+| ..+.+..+...
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~----~a~v~~~~~~~ 552 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVS----AGLEFDPVSKQ 552 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBS----CEEEEETTTTE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccce----eEEEEeCCCCE
Confidence 876544332221 112233324788888887655 6999999988755432100000111122 23445554233
Q ss_pred EEEEEEC--C-----CcEEEEE
Q 004404 715 EVLVTSA--D-----SRIRVVD 729 (755)
Q Consensus 715 ~L~sgs~--D-----g~IrVWD 729 (755)
+++.|+. + ..+.+||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd 574 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFK 574 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEE
Confidence 6666655 2 3588888
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=45.37 E-value=2.5e+02 Score=28.21 Aligned_cols=101 Identities=11% Similarity=0.122 Sum_probs=61.7
Q ss_pred cEEEEEeCCCcEEEEECCC---------CcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-------CcE
Q 004404 579 QHLLSSSMDKTVRLWHLSS---------KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-------RQV 642 (755)
Q Consensus 579 ~~LaSgs~DgtVrLWDl~t---------~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-------~~~ 642 (755)
..++..+..|.+..+.... |.....+.....|..+...+ ++..++..+..|.++...+.. ++-
T Consensus 128 ~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~-~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG 206 (276)
T 3no0_A 128 THILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN-GEPYLLVITAKGRVKKISHEEIPKTNRGVKG 206 (276)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES-SCSEEEEEETTSCEEEEEGGGSCCCCTTCCC
T ss_pred CEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC-CCCEEEEEeCCCcEEEeEHHHcccCCCCCcc
Confidence 5677777777777776421 22222233456777766655 567889999999999887633 111
Q ss_pred EEeccCCCCEEEEEEccCCCEEEEEECCCcEEE--EECCC
Q 004404 643 VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL--YNTSE 680 (755)
Q Consensus 643 v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~l--wDl~~ 680 (755)
+......+.+..+....+...++..+.+|.+.. +++..
T Consensus 207 v~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 207 TEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred eEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 222233345555544444456777788888877 77654
No 361
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=43.55 E-value=3.2e+02 Score=28.86 Aligned_cols=113 Identities=6% Similarity=-0.028 Sum_probs=64.9
Q ss_pred CceEEEEEeeCCCcEEEEEECCCcEEEEECCC-C-------------cEEEeccCCCCEEEEEEccCCCEEEEEECCCcE
Q 004404 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-R-------------QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (755)
Q Consensus 608 ~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-~-------------~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I 673 (755)
..|..|+. .....+.-..||.|..|-... + .+. .......|..|+.. ..+.++-..+|.|
T Consensus 75 ~~v~~va~---G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~-~v~~~~~i~~va~G--~~hs~al~~~G~v 148 (423)
T 3mvd_K 75 PDAVDISA---GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPD-LIDLPGKALCISAG--DSHSACLLEDGRV 148 (423)
T ss_dssp SSEEEEEE---CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCE-ECCCSSCEEEEEEC--SSEEEEEETTSCE
T ss_pred CCceEEee---CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCe-EEcCCCCEEEEEcC--cCeEEEEeCCCeE
Confidence 45766665 456777788999999996532 1 111 12233456666654 3456666789999
Q ss_pred EEEEC---CCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEEEEE
Q 004404 674 HLYNT---SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (755)
Q Consensus 674 ~lwDl---~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~IrVWD 729 (755)
+.|-. ..+++-..................|..|+.... +.++-..||.|+.|-
T Consensus 149 ~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~---hs~alt~~G~v~~wG 204 (423)
T 3mvd_K 149 FAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGAD---HLVILTTAGKVFTVG 204 (423)
T ss_dssp EEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSS---EEEEEETTSCEEEEE
T ss_pred EEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCC---eEEEEecCCeEEEee
Confidence 99985 233332111000000001122346777776543 566678899999995
No 362
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=43.40 E-value=3.6e+02 Score=29.39 Aligned_cols=68 Identities=9% Similarity=-0.090 Sum_probs=37.6
Q ss_pred EEEEeecC--CceEEEEEeeC------CCcEEEEEECCCcEEEEECCCCc----EEEec---------cCCCCEEEEEEc
Q 004404 600 CLKIFSHS--DYVTCIQFNPV------DDRYFISGSLDAKVRIWSIPERQ----VVDWN---------DLHEMVTAACYT 658 (755)
Q Consensus 600 ~~~~~~h~--~~VtsVafsP~------dg~~LaSgS~DgtVrIWDl~t~~----~v~~~---------~~~~~VtsvafS 658 (755)
++..+.|. ..+..+.|-.. .+.+| .+...+.|....+.... ...+. .....+..+.+.
T Consensus 266 P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~ 344 (463)
T 2wg3_C 266 SLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGED 344 (463)
T ss_dssp CCEECCC----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEEC
T ss_pred CeEEeeCCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEEC
Confidence 44455544 57788888541 12344 45555776666554321 11111 123578999999
Q ss_pred cCCCEEEEEE
Q 004404 659 PDGQGALVGS 668 (755)
Q Consensus 659 PdG~~LasGs 668 (755)
|||.++++..
T Consensus 345 pdG~Lyv~~~ 354 (463)
T 2wg3_C 345 ELGEVYILSS 354 (463)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCEEEEec
Confidence 9998877765
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=42.66 E-value=3.4e+02 Score=28.89 Aligned_cols=142 Identities=8% Similarity=0.120 Sum_probs=80.3
Q ss_pred cEEEEECCCC--cEEEEee-------cCCceEEEEEeeC--C----CcEEEEE-ECCCcEEEEECCCCcEEEecc-----
Q 004404 589 TVRLWHLSSK--TCLKIFS-------HSDYVTCIQFNPV--D----DRYFISG-SLDAKVRIWSIPERQVVDWND----- 647 (755)
Q Consensus 589 tVrLWDl~t~--~~~~~~~-------h~~~VtsVafsP~--d----g~~LaSg-S~DgtVrIWDl~t~~~v~~~~----- 647 (755)
+|.+||+.++ +.++++. ....+..+.+... + +.+++.. +...-|.|+|+.+++.-+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5788999999 8888875 2356888888711 1 3344433 346789999999887554431
Q ss_pred --------------CCCCEEEEEEccC----CCEEEEEECCCcEEEEECCCCeeeecc-ccccccccccCCCCCeEEEEE
Q 004404 648 --------------LHEMVTAACYTPD----GQGALVGSYKGSCHLYNTSENKLQQKS-PINLQNKKKRSHQRKITGFQF 708 (755)
Q Consensus 648 --------------~~~~VtsvafSPd----G~~LasGs~DG~I~lwDl~~~~~~~~~-~i~~~~~~~~~h~~~Vtsl~f 708 (755)
....+..++++|+ ++.|+-....+. ++|.+.+..+.... ...+.....++....-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 0136778888887 667766654432 33433322111100 000000001111123345566
Q ss_pred c-cCCCeEEEEEECCCcEEEEECCc
Q 004404 709 A-PGSSSEVLVTSADSRIRVVDGID 732 (755)
Q Consensus 709 s-Pdg~~~L~sgs~Dg~IrVWD~~~ 732 (755)
. .+|. ++++--....|..|++..
T Consensus 283 D~~~G~-ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKV-IFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCE-EEEEESSSSEEEEEETTS
T ss_pred eCCCCe-EEEEeccCCeEEEEeCCC
Confidence 5 4553 566667788999999643
No 364
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=38.14 E-value=3.2e+02 Score=27.33 Aligned_cols=140 Identities=9% Similarity=-0.025 Sum_probs=78.8
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCC-CcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-CcEEEe
Q 004404 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDW 645 (755)
Q Consensus 568 ~~V~~L~~spd~~LaSgs~DgtVrLWDl~t-~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-~~~v~~ 645 (755)
..|..|+......++.. ||.|+.|-... +++-........|..|+... ...+.-. ||.|..|-... +++-.-
T Consensus 102 ~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~---~~~~~l~-~G~v~~wG~n~~gqlg~p 175 (282)
T 3qhy_B 102 SGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV---YTALAVK-NGGVIAWGDNYFGQTTVP 175 (282)
T ss_dssp SSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS---SEEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred CCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCCCCccCCCCeEEEEccc---CEEEEEE-CCEEEEecCCCCCCCCCc
Confidence 35777877665444444 89999997654 22211112345677777643 3333344 79999997654 222111
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcE
Q 004404 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (755)
Q Consensus 646 ~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~I 725 (755)
......|..++..... .++. .+|.|+.|-......+.. +. .....|..|+..... .++.. |++|
T Consensus 176 ~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~---p~------~~~~~v~~i~~G~~h--~~al~--~g~v 239 (282)
T 3qhy_B 176 AEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTV---PT------EALSGVSAIASGEWY--SLALK--NGKV 239 (282)
T ss_dssp GGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCC---CG------GGGSSCCEEEECSSC--EEEEE--TTEE
T ss_pred eecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCC---Cc------ccCCCceEEEcCCCE--EEEEE--CCEE
Confidence 1123467777765443 3333 599999997654332221 10 112347777665543 34444 9999
Q ss_pred EEEE
Q 004404 726 RVVD 729 (755)
Q Consensus 726 rVWD 729 (755)
..|-
T Consensus 240 ~~wG 243 (282)
T 3qhy_B 240 IAWG 243 (282)
T ss_dssp EEES
T ss_pred EEec
Confidence 9996
No 365
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=37.04 E-value=3.3e+02 Score=27.23 Aligned_cols=139 Identities=14% Similarity=0.004 Sum_probs=78.2
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCC-CcEEEEeecCCceEEEEEeeCCCcEEEEEECCCcEEEEECCC-CcEEEec
Q 004404 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWN 646 (755)
Q Consensus 569 ~V~~L~~spd~~LaSgs~DgtVrLWDl~t-~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t-~~~v~~~ 646 (755)
.|..|+......++. . ||.|+.|-... +++-........|..|+... ...+.-. ||.|..|-... +++-...
T Consensus 64 ~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 355666655544554 4 89999997653 22111111245788888754 4444455 99999997654 2221111
Q ss_pred cCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcEE
Q 004404 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (755)
Q Consensus 647 ~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~Ir 726 (755)
.....|..++.... +.++-. +|.|+.|-......+.. +. .-...|..|+..... .++. .|+.|.
T Consensus 138 ~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~---p~------~~~~~v~~i~~G~~h--s~al--~~G~v~ 201 (282)
T 3qhy_B 138 EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTV---PA------EAQSGVDDVAGGIFH--SLAL--KDGKVI 201 (282)
T ss_dssp GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSC---CG------GGGSSEEEEEECSSE--EEEE--ETTEEE
T ss_pred cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCC---ce------ecCCCeEEEEecCCE--EEEE--ECCeEE
Confidence 22345777766543 333334 79999997765332221 10 113468888766543 3444 599999
Q ss_pred EEE
Q 004404 727 VVD 729 (755)
Q Consensus 727 VWD 729 (755)
.|-
T Consensus 202 ~wG 204 (282)
T 3qhy_B 202 AWG 204 (282)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 366
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=35.36 E-value=3.6e+02 Score=31.52 Aligned_cols=154 Identities=8% Similarity=0.052 Sum_probs=80.2
Q ss_pred CCCEEEEEecCC--cEEEEEeCCCcEEEEECCCCcEEEEee-c-------CCceEEEEEeeCCCcEEEEEECCCc----E
Q 004404 567 LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-H-------SDYVTCIQFNPVDDRYFISGSLDAK----V 632 (755)
Q Consensus 567 ~~~V~~L~~spd--~~LaSgs~DgtVrLWDl~t~~~~~~~~-h-------~~~VtsVafsP~dg~~LaSgS~Dgt----V 632 (755)
.+.|.+|+++|. +.++.+...+.|...+ ..++.-..+. + ...|.+|++.|.+.+.++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 357999999985 6778888878776665 3344333332 1 2469999999844455655543321 3
Q ss_pred EEEE-CCCCcE---EEec-c------CCCCEEEEEEccC-CCEEEEEECCCcEEEEECCC-CeeeeccccccccccccCC
Q 004404 633 RIWS-IPERQV---VDWN-D------LHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRSH 699 (755)
Q Consensus 633 rIWD-l~t~~~---v~~~-~------~~~~VtsvafSPd-G~~LasGs~DG~I~lwDl~~-~~~~~~~~i~~~~~~~~~h 699 (755)
.||- ...++- +... . ....+..+++.|. ...++++...+. ||-..+ ++--.... ..+ .....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~-~~~--~~~~~ 167 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVT-SIP--DAFTN 167 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEET-TSC--CCCST
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCc-cCc--cccCC
Confidence 3443 333332 2110 0 0113567888884 456666664443 333333 32111111 000 00011
Q ss_pred CCCeEEEEEccCCCeEEEEEECC-CcEE
Q 004404 700 QRKITGFQFAPGSSSEVLVTSAD-SRIR 726 (755)
Q Consensus 700 ~~~Vtsl~fsPdg~~~L~sgs~D-g~Ir 726 (755)
...+..|.+.|.....|+++..+ +.|.
T Consensus 168 ~~~~~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 168 GIGYTSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp TTCEEEEEECTTSTTCEEEEESSTTCEE
T ss_pred CCCeEEEEECCCCCCEEEEEEcCCCeEE
Confidence 24688899988654356666654 4443
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.51 E-value=78 Score=39.02 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=30.6
Q ss_pred ceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEecc
Q 004404 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~ 647 (755)
.+.+++..+ +..++++-+.|+++|||++.+++++....
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345555666 77899999999999999999999886543
No 368
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=28.37 E-value=4.2e+02 Score=30.89 Aligned_cols=120 Identities=12% Similarity=0.110 Sum_probs=61.5
Q ss_pred cCCceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC-------CCCEEEEEEccC-CCEEEEEECCCc----E
Q 004404 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-------HEMVTAACYTPD-GQGALVGSYKGS----C 673 (755)
Q Consensus 606 h~~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~-------~~~VtsvafSPd-G~~LasGs~DG~----I 673 (755)
....|.+|+++|.+...++++...+.|...+=....-...... ...+.+|++.|. ...++++..... -
T Consensus 13 ~~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 13 GGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 3568999999996667788888878776554222222222221 236999999984 345555543321 3
Q ss_pred EEEECC-CCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEECCCcE
Q 004404 674 HLYNTS-ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (755)
Q Consensus 674 ~lwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~Dg~I 725 (755)
.||--. .++--......+...........+..+++.|..+..++++...+.|
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl 145 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI 145 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE
Confidence 344333 3332221111100000000111355678887654456666544443
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=26.32 E-value=5.3e+02 Score=26.22 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=88.1
Q ss_pred cCCcEEEEEeCCCcEEEEECC---CC------cE---EEEeecCCceEEEEEeeC--CCcEEEEEECCCcEEEEECCCC-
Q 004404 576 SKSQHLLSSSMDKTVRLWHLS---SK------TC---LKIFSHSDYVTCIQFNPV--DDRYFISGSLDAKVRIWSIPER- 640 (755)
Q Consensus 576 spd~~LaSgs~DgtVrLWDl~---t~------~~---~~~~~h~~~VtsVafsP~--dg~~LaSgS~DgtVrIWDl~t~- 640 (755)
+....++..+..|.++-+... .. .. ...+.....|..+...+. +..+|+..+..|.++...+..-
T Consensus 56 ~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~ 135 (312)
T 1suu_A 56 NTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFK 135 (312)
T ss_dssp ETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGC
T ss_pred CCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhh
Confidence 334677777888887766543 11 11 011233455665543321 3567888999999998877432
Q ss_pred ------cEEEeccCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCe
Q 004404 641 ------QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (755)
Q Consensus 641 ------~~v~~~~~~~~VtsvafSPdG~~LasGs~DG~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~ 714 (755)
...........+..+........|+..+.+|.+..+.+..-........-.....+. ....|.++....++.
T Consensus 136 ~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~- 213 (312)
T 1suu_A 136 AVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENP- 213 (312)
T ss_dssp C----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCS-
T ss_pred ccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCC-
Confidence 111112224566666666556788899999999999876522221110001111222 245567766655555
Q ss_pred EEEEEECCCcEEEEE
Q 004404 715 EVLVTSADSRIRVVD 729 (755)
Q Consensus 715 ~L~sgs~Dg~IrVWD 729 (755)
.|++.+..|.++..+
T Consensus 214 ~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 214 YLLIVSENGYGKRLN 228 (312)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred eEEEEECCCceEEEE
Confidence 688889999988887
No 370
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=26.13 E-value=78 Score=36.89 Aligned_cols=38 Identities=21% Similarity=0.597 Sum_probs=30.0
Q ss_pred CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC
Q 004404 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL 648 (755)
Q Consensus 608 ~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~ 648 (755)
..|.++.+ +..++++-+.|.++|+|++.+++++.....
T Consensus 222 ~~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34665555 568999999999999999999998755443
No 371
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=25.34 E-value=1.4e+02 Score=33.94 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=41.3
Q ss_pred ceEEEEEeeCCCcEEEEEECC------------CcEEEEECCCCcEEEecc--CCCCEEEEEEccCCCEEEEE
Q 004404 609 YVTCIQFNPVDDRYFISGSLD------------AKVRIWSIPERQVVDWND--LHEMVTAACYTPDGQGALVG 667 (755)
Q Consensus 609 ~VtsVafsP~dg~~LaSgS~D------------gtVrIWDl~t~~~v~~~~--~~~~VtsvafSPdG~~LasG 667 (755)
..-.|+|+| .++++++-..+ ..+.+.+..++++..+.. ....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 357789999 88866654322 235666777787765543 34689999999999988875
No 372
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=25.13 E-value=24 Score=34.00 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=15.6
Q ss_pred cchHHHHHHHHHHhCCCC
Q 004404 77 ISVSERRSRLLREMGLSH 94 (755)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (755)
+|=|-||+.||++||+.-
T Consensus 8 AS~SPrR~eLL~~~gi~f 25 (189)
T 1ex2_A 8 ASQSPRRKELLDLLQLPY 25 (189)
T ss_dssp CCCCHHHHHHHHTTCCCC
T ss_pred ECCCHHHHHHHHhCCCCe
Confidence 577899999999999954
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=24.74 E-value=2e+02 Score=32.64 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=43.0
Q ss_pred CceEEEEEeeCCCcEEEEEEC------------CCcEEEEECCCCcEEEeccC--CCCEEEEEEccCCCEEEEEE
Q 004404 608 DYVTCIQFNPVDDRYFISGSL------------DAKVRIWSIPERQVVDWNDL--HEMVTAACYTPDGQGALVGS 668 (755)
Q Consensus 608 ~~VtsVafsP~dg~~LaSgS~------------DgtVrIWDl~t~~~v~~~~~--~~~VtsvafSPdG~~LasGs 668 (755)
.....|.|.+ ++.+.++... ...|..++..++++..+... ...++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4567899999 7877663221 12567777778887766543 35799999999999988864
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=23.01 E-value=44 Score=41.22 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=31.5
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEeCcCCceeeee
Q 004404 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (755)
Q Consensus 458 ~I~sI~fSpdg~~LaTgs~DGtVrVWdl~t~~~~~~l 494 (755)
.|.+++..++..+|+|-+.|+++|||++.+++++...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 5566677788899999999999999999999877664
No 375
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=22.97 E-value=5.9e+02 Score=25.63 Aligned_cols=100 Identities=8% Similarity=0.017 Sum_probs=58.3
Q ss_pred ecCC-cEEEEEe-CCCcEEEEECCCCcEEEEeecCCceEEEEEeeCCCcEEEEEECC--CcEEEEECCCCcEEEeccCCC
Q 004404 575 WSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD--AKVRIWSIPERQVVDWNDLHE 650 (755)
Q Consensus 575 ~spd-~~LaSgs-~DgtVrLWDl~t~~~~~~~~h~~~VtsVafsP~dg~~LaSgS~D--gtVrIWDl~t~~~v~~~~~~~ 650 (755)
++++ +.|+-.+ ....|.+-++..+.....+. +... ..+.| ++.+|+-.... ..|..-++.......+.. .
T Consensus 152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~--~ 225 (302)
T 3s25_A 152 CNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPNPVVLTE--A 225 (302)
T ss_dssp SEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCCCEECSC--S
T ss_pred eeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCCeEEEeC--C
Confidence 3443 4444344 46788888887766554443 2222 34668 77777766544 356666666655444432 2
Q ss_pred CEEEEEEccCCCEEEEEEC--CCcEEEEECCCCe
Q 004404 651 MVTAACYTPDGQGALVGSY--KGSCHLYNTSENK 682 (755)
Q Consensus 651 ~VtsvafSPdG~~LasGs~--DG~I~lwDl~~~~ 682 (755)
.+ ..|+|++.+|+-+.. .+.|..-++....
T Consensus 226 ~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 226 NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp CE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred Cc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 33 348888988887643 3556666666543
No 376
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=21.96 E-value=98 Score=34.76 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=42.1
Q ss_pred CCCcEEEEeCCCcEEEEeeCCCCccc-ceeeeeEeecccCCEE-EEEEcCCCCEEEEEECCCcEEE
Q 004404 419 DSQDVSFHGQERVRVRQYGKSCKDLT-ALYKCQEIQAHNGSIW-SIKFSLDGRYLASAGEDCVIHV 482 (755)
Q Consensus 419 ds~~~l~sg~~dg~Vriwd~~~~~~~-~~~~~q~l~gH~~~I~-sI~fSpdg~~LaTgs~DGtVrV 482 (755)
....+++.|+.+|+|.-..+...... .++....+.....+|. .|.+++++.+|+.++..+.++|
T Consensus 411 ~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 411 NGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp TTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred CCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 44567899999999876654322111 1222222333456886 9999999999999988776655
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=21.76 E-value=1.6e+02 Score=33.41 Aligned_cols=60 Identities=8% Similarity=0.089 Sum_probs=39.1
Q ss_pred CEEEEEEccCCCEEEEEECC------------CcEEEEECCCCeeeeccccccccccccCCCCCeEEEEEccCCCeEEEE
Q 004404 651 MVTAACYTPDGQGALVGSYK------------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (755)
Q Consensus 651 ~VtsvafSPdG~~LasGs~D------------G~I~lwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~s 718 (755)
..-.|+|+|.|.+++.-..+ ..+.+++..++++...+.. .....+++++|+|+++++++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~--------P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--------PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC--------CTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC--------CCCccCcCeeECCCCCEEEEE
Confidence 46779999999855553321 2356666666665543321 234689999999999855444
No 378
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protei; structural genomics, structural genomics consortium, unknown function; 2.00A {Homo sapiens}
Probab=21.52 E-value=34 Score=34.03 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHhCCCC
Q 004404 77 ISVSERRSRLLREMGLSH 94 (755)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (755)
+|=|-||+.||++||+.-
T Consensus 9 AS~SPrR~eLL~~~Gi~f 26 (230)
T 2p5x_A 9 ASASPRRQEILSNAGLRF 26 (230)
T ss_dssp CCCCHHHHHHHHHTTCCC
T ss_pred eCCCHHHHHHHHHCCCCe
Confidence 577899999999999954
No 379
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=20.85 E-value=5.7e+02 Score=29.39 Aligned_cols=114 Identities=9% Similarity=0.107 Sum_probs=58.9
Q ss_pred CceEEEEEeeCCCcEEEEEECCCcEEEEECCCCcEEEeccC-------CCCEEEEEEcc-CCCEEEEEECC-------Cc
Q 004404 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-------HEMVTAACYTP-DGQGALVGSYK-------GS 672 (755)
Q Consensus 608 ~~VtsVafsP~dg~~LaSgS~DgtVrIWDl~t~~~v~~~~~-------~~~VtsvafSP-dG~~LasGs~D-------G~ 672 (755)
+.|..|+++|.+...|+.+...+.|..++=....-..+... ...|.+|+++| +...|+++... +.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 38999999996556777787777766665333222232221 13589999999 43455555422 12
Q ss_pred EEEEECCCC-eeeeccccccccccccCCCCCeEEEEEccCCCeEEEEEEC
Q 004404 673 CHLYNTSEN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (755)
Q Consensus 673 I~lwDl~~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fsPdg~~~L~sgs~ 721 (755)
..||.-..+ +--..............-...+..|++.|..+..|+++..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 445554433 2211111100000000001124678899876545666653
No 380
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=20.79 E-value=1.6e+02 Score=32.85 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=43.7
Q ss_pred cCCCcEEEEeCCCcEEEEeeCCCCcccceeeeeEeecccCCEE-EEEEcCCCCEEEEEECCCcEEEE
Q 004404 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIW-SIKFSLDGRYLASAGEDCVIHVW 483 (755)
Q Consensus 418 ~ds~~~l~sg~~dg~Vriwd~~~~~~~~~~~~q~l~gH~~~I~-sI~fSpdg~~LaTgs~DGtVrVW 483 (755)
.++..+++.|+.+|+|.-.-........++....+ ....+|. .|.++++..+|+.++..+.++|-
T Consensus 397 ~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 397 EDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSI-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp ETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEES-STTSCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred ecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeecc-CCCCcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 34567789999999997655432211122222223 3456784 89999999999999998877774
No 381
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=20.76 E-value=2.8e+02 Score=31.39 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=41.6
Q ss_pred CCEEEEEecCCcEEEEEeCC-------------CcEEEEECCCCcEEEEee--cCCceEEEEEeeCCCcEEEEEE
Q 004404 568 DDVLDLSWSKSQHLLSSSMD-------------KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGS 627 (755)
Q Consensus 568 ~~V~~L~~spd~~LaSgs~D-------------gtVrLWDl~t~~~~~~~~--h~~~VtsVafsP~dg~~LaSgS 627 (755)
.....|.|.+++.|..+... ..|..++..+++....+. ....++.++|+| |++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEEE
Confidence 34678999998766664432 156777777788766664 346799999999 888776653
Done!