Query 004409
Match_columns 755
No_of_seqs 112 out of 169
Neff 2.2
Searched_HMMs 46136
Date Thu Mar 28 22:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04571 Lipin_N: lipin, N-ter 100.0 1.2E-39 2.6E-44 293.1 8.2 95 1-98 1-96 (110)
2 KOG2116 Protein involved in pl 100.0 8.5E-37 1.8E-41 332.6 9.9 105 1-108 1-105 (738)
3 COG5083 SMP2 Uncharacterized p 100.0 5.6E-31 1.2E-35 279.1 8.2 94 1-97 1-94 (580)
4 PF13464 DUF4115: Domain of un 56.9 12 0.00027 31.4 3.2 25 43-75 37-61 (77)
5 smart00557 IG_FLMN Filamin-typ 41.0 54 0.0012 28.3 4.7 44 29-81 46-92 (93)
6 PRK10856 cytoskeletal protein 32.9 43 0.00093 36.0 3.4 28 43-78 290-317 (331)
7 PF09122 DUF1930: Domain of un 22.2 21 0.00046 31.6 -0.9 41 28-68 24-64 (68)
8 KOG3203 Mitochondrial/chloropl 14.0 67 0.0014 32.5 0.3 36 1-36 30-66 (165)
9 cd01616 TGS The TGS domain, na 12.6 2.7E+02 0.0059 20.1 3.1 27 62-88 33-59 (60)
10 COG5618 Predicted periplasmic 12.3 1.9E+02 0.0041 30.1 2.9 42 41-82 82-127 (206)
No 1
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=100.00 E-value=1.2e-39 Score=293.12 Aligned_cols=95 Identities=55% Similarity=0.867 Sum_probs=87.5
Q ss_pred Cccc-cccccccccceeeccCCccccCCceeEEEEecCCCCcccCCceeeccccccccccCCcEEEEEECCeecceeeee
Q 004409 1 MYTV-GRIGSYISRGVYTVSAPFHPFGGAVDIIVVEQPDGSFKSSPWYVRFGKFQGVLKTKEKVVTINVNGVDANFNMYL 79 (755)
Q Consensus 1 MqyV-Grigs~Is~~~ysvs~pfatLSGAIDVIVVeQpDGslkSSPFHVRFGKlqgVLr~~EKvV~I~VNG~~~d~~MKL 79 (755)
|||| ||+.+.++ .+|+..|| +||||||||||||||||+|+||||||||||+ |+||+++|+|+|.|||++++++|||
T Consensus 1 M~yv~~~i~~~v~-~~~~~~np-atlSGAiDVIVV~q~DGs~~sSPFhVRFGk~-~vl~~~ek~V~I~VNG~~~~~~MkL 77 (110)
T PF04571_consen 1 MNYVAGRIFSSVS-EVYNPINP-ATLSGAIDVIVVEQPDGSLKSSPFHVRFGKL-GVLRPREKVVDIEVNGKPVDFHMKL 77 (110)
T ss_pred CceehHhHhhhHH-HHhccCCc-ccccCceeEEEEecCCCCEecCccEEEEcce-eeecccCcEEEEEECCEEcceEEEE
Confidence 9999 99999887 46665567 8999999999999999999999999999999 6999999999999999999999999
Q ss_pred CCCccEEEEeecCcccccc
Q 004409 80 DHKGEAYFLKEADVEEGES 98 (755)
Q Consensus 80 G~~GEAFFV~etd~~~~e~ 98 (755)
|++|||||+++++++..+.
T Consensus 78 g~~GeAfFv~e~~~~~~~v 96 (110)
T PF04571_consen 78 GENGEAFFVEETEDDEEEV 96 (110)
T ss_pred CCCcEEEEEEecCCCcccC
Confidence 9999999999998765443
No 2
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=100.00 E-value=8.5e-37 Score=332.56 Aligned_cols=105 Identities=44% Similarity=0.673 Sum_probs=96.4
Q ss_pred CccccccccccccceeeccCCccccCCceeEEEEecCCCCcccCCceeeccccccccccCCcEEEEEECCeecceeeeeC
Q 004409 1 MYTVGRIGSYISRGVYTVSAPFHPFGGAVDIIVVEQPDGSFKSSPWYVRFGKFQGVLKTKEKVVTINVNGVDANFNMYLD 80 (755)
Q Consensus 1 MqyVGrigs~Is~~~ysvs~pfatLSGAIDVIVVeQpDGslkSSPFHVRFGKlqgVLr~~EKvV~I~VNG~~~d~~MKLG 80 (755)
||||||++++|+++||+|+ | |||||||||||||||||+|+|||||||||||| ||++++|+|+|.|||+.+||+||||
T Consensus 1 M~yVgrv~~~V~~~y~sIn-p-atlsGaIDVIVVeQpDG~~~cSPfhVRFGKf~-Vlk~~eK~V~I~VNG~~~d~~MkL~ 77 (738)
T KOG2116|consen 1 MNYVGRVFSSVSKLYNSIN-P-ATLSGAIDVIVVEQPDGNLKCSPFHVRFGKFG-VLKPSEKKVDIFVNGVESDLHMKLG 77 (738)
T ss_pred CchhHHHHHHHHHHhcccC-c-ccccCceeEEEEecCCCCcccccceEEeeeee-EeecCCcEEEEEecCEEecceeEec
Confidence 9999999999999998884 7 99999999999999999999999999999995 9999999999999999999999999
Q ss_pred CCccEEEEeecCccccccCCCCCCCCCC
Q 004409 81 HKGEAYFLKEADVEEGESASYPSSSSDE 108 (755)
Q Consensus 81 ~~GEAFFV~etd~~~~e~~~~Psss~de 108 (755)
++||||||+|++++.+..+.+.++++..
T Consensus 78 dsGeAfFv~Eted~~e~~p~~L~tsp~~ 105 (738)
T KOG2116|consen 78 DSGEAFFVEETEDDVEDVPDELLTSPIL 105 (738)
T ss_pred CCccEEEEEeccchhhcccchhccCCCC
Confidence 9999999999998775555555566644
No 3
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=99.97 E-value=5.6e-31 Score=279.12 Aligned_cols=94 Identities=38% Similarity=0.592 Sum_probs=89.4
Q ss_pred CccccccccccccceeeccCCccccCCceeEEEEecCCCCcccCCceeeccccccccccCCcEEEEEECCeecceeeeeC
Q 004409 1 MYTVGRIGSYISRGVYTVSAPFHPFGGAVDIIVVEQPDGSFKSSPWYVRFGKFQGVLKTKEKVVTINVNGVDANFNMYLD 80 (755)
Q Consensus 1 MqyVGrigs~Is~~~ysvs~pfatLSGAIDVIVVeQpDGslkSSPFHVRFGKlqgVLr~~EKvV~I~VNG~~~d~~MKLG 80 (755)
||||||+..++++.|+++ || +|||||||||||||+||.|+|||||||||||+ +|.|++|+|+++|||+.++++|||+
T Consensus 1 MqyVgra~~SVsktwn~I-NP-~TLSGaiDVIVVE~~Dg~L~CspFhvRFGkf~-~l~ps~kkV~~fvNgkl~~~~Mkl~ 77 (580)
T COG5083 1 MQYVGRAITSVSKTWNNI-NP-ITLSGAIDVIVVEDKDGNLRCSPFHVRFGKFY-FLGPSNKKVHLFVNGKLCDITMKLT 77 (580)
T ss_pred CchhhhhhhhhhhhhhcC-Cc-hhccCceeEEEEEcCCCCCccccceEEeeeEE-EEccCCcEEEEEECceecCCceeec
Confidence 999999999999888888 68 79999999999999999999999999999998 9999999999999999999999999
Q ss_pred CCccEEEEeecCccccc
Q 004409 81 HKGEAYFLKEADVEEGE 97 (755)
Q Consensus 81 ~~GEAFFV~etd~~~~e 97 (755)
++||||||+++++.++.
T Consensus 78 d~GEafFvf~td~~vp~ 94 (580)
T COG5083 78 DQGEAFFVFDTDDGVPY 94 (580)
T ss_pred cCceEEEEEecCCCCCh
Confidence 99999999999776654
No 4
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=56.87 E-value=12 Score=31.39 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=21.9
Q ss_pred cCCceeeccccccccccCCcEEEEEECCeecce
Q 004409 43 SSPWYVRFGKFQGVLKTKEKVVTINVNGVDANF 75 (755)
Q Consensus 43 SSPFHVRFGKlqgVLr~~EKvV~I~VNG~~~d~ 75 (755)
-.||.||+|... .|+|.+||+++++
T Consensus 37 ~~~~~i~iGna~--------~v~v~~nG~~~~~ 61 (77)
T PF13464_consen 37 KEPFRIRIGNAG--------AVEVTVNGKPVDL 61 (77)
T ss_pred CCCEEEEEeCCC--------cEEEEECCEECCC
Confidence 568999999983 4899999999987
No 5
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=41.03 E-value=54 Score=28.28 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=26.9
Q ss_pred eeEEEEecCCCCcccCCceeeccccccccccCCcEEEEEECCeec---ceeeeeCC
Q 004409 29 VDIIVVEQPDGSFKSSPWYVRFGKFQGVLKTKEKVVTINVNGVDA---NFNMYLDH 81 (755)
Q Consensus 29 IDVIVVeQpDGslkSSPFHVRFGKlqgVLr~~EKvV~I~VNG~~~---d~~MKLG~ 81 (755)
+.+-|....||+|. |+|= .-.+....|.|.+||+++ +|.+++.+
T Consensus 46 ~~~~v~d~~dGty~-----v~y~----P~~~G~~~i~V~~~g~~I~gSPF~v~V~~ 92 (93)
T smart00557 46 VPVEVKDNGDGTYT-----VSYT----PTEPGDYTVTVKFGGEHIPGSPFTVKVGP 92 (93)
T ss_pred eEeEEEeCCCCEEE-----EEEE----eCCCEeEEEEEEECCEECCCCCEEEEEeC
Confidence 44445555555543 3331 223445789999999987 78777653
No 6
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=32.87 E-value=43 Score=36.00 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=23.6
Q ss_pred cCCceeeccccccccccCCcEEEEEECCeecceeee
Q 004409 43 SSPWYVRFGKFQGVLKTKEKVVTINVNGVDANFNMY 78 (755)
Q Consensus 43 SSPFHVRFGKlqgVLr~~EKvV~I~VNG~~~d~~MK 78 (755)
..||.|++|.. ..|.|++||+++++.=+
T Consensus 290 ~~p~~v~iG~~--------~~v~i~~nG~~vdl~~~ 317 (331)
T PRK10856 290 QAPYKLKIGAP--------AAVQIQYQGKPVDLSRF 317 (331)
T ss_pred CceEEEEEcCC--------CceEEEECCEEccCCcc
Confidence 35999999998 45899999999998654
No 7
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=22.21 E-value=21 Score=31.55 Aligned_cols=41 Identities=32% Similarity=0.412 Sum_probs=30.0
Q ss_pred ceeEEEEecCCCCcccCCceeeccccccccccCCcEEEEEE
Q 004409 28 AVDIIVVEQPDGSFKSSPWYVRFGKFQGVLKTKEKVVTINV 68 (755)
Q Consensus 28 AIDVIVVeQpDGslkSSPFHVRFGKlqgVLr~~EKvV~I~V 68 (755)
-+|=.+|++||-.+++---|...|.-..|+=.+.++|.|+|
T Consensus 24 ~vDg~~v~~PD~El~sA~~HlH~GEkA~V~FkS~Rv~~iEv 64 (68)
T PF09122_consen 24 IVDGEIVENPDAELKSALVHLHIGEKAQVFFKSQRVAVIEV 64 (68)
T ss_dssp EETTEEESS--HHHHHHHTT-BTT-EEEEEETTS-EEEEE-
T ss_pred EEcCeEcCCCCHHHHHHHHHhhcCceeEEEEecCcEEEEEc
Confidence 46667899999999999999999976668877889999988
No 8
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=14.04 E-value=67 Score=32.51 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=26.9
Q ss_pred CccccccccccccceeeccCC-ccccCCceeEEEEec
Q 004409 1 MYTVGRIGSYISRGVYTVSAP-FHPFGGAVDIIVVEQ 36 (755)
Q Consensus 1 MqyVGrigs~Is~~~ysvs~p-fatLSGAIDVIVVeQ 36 (755)
||-.|||++-|+..+-.-..| |++.+-|=|++||-.
T Consensus 30 ~q~lGrLAs~ia~~L~GkhKPiYhP~~DcGD~VVV~N 66 (165)
T KOG3203|consen 30 QQPLGRLASQIATTLQGKHKPIYHPSTDCGDHVVVTN 66 (165)
T ss_pred cCchHHHHHHHHHHHhhccCCccCCccCCCCEEEEec
Confidence 466789988887665555555 688888889888854
No 9
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=12.57 E-value=2.7e+02 Score=20.14 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=22.5
Q ss_pred cEEEEEECCeecceeeeeCCCccEEEE
Q 004409 62 KVVTINVNGVDANFNMYLDHKGEAYFL 88 (755)
Q Consensus 62 KvV~I~VNG~~~d~~MKLG~~GEAFFV 88 (755)
..+-..|||+.+++.-.|.++++.-|+
T Consensus 33 ~~~~~~vn~~~~~l~~~l~~~~~i~~i 59 (60)
T cd01616 33 GFIGALVNGQLVDLSYTLQDGDTVSIV 59 (60)
T ss_pred heEEEEECCEECCCCcCcCCCCEEEEe
Confidence 557788999999999889888876665
No 10
>COG5618 Predicted periplasmic lipoprotein [General function prediction only]
Probab=12.34 E-value=1.9e+02 Score=30.07 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=30.2
Q ss_pred cccCC--ceeec-ccccc-ccccCCcEEEEEECCeecceeeeeCCC
Q 004409 41 FKSSP--WYVRF-GKFQG-VLKTKEKVVTINVNGVDANFNMYLDHK 82 (755)
Q Consensus 41 lkSSP--FHVRF-GKlqg-VLr~~EKvV~I~VNG~~~d~~MKLG~~ 82 (755)
.-+.| |-||| ||.-. =-++++-.|+|-++|.-.++...+|+.
T Consensus 82 ~gs~n~t~~vrftGkVvaaetksr~g~v~vd~dgdga~~RvQiGPa 127 (206)
T COG5618 82 QGSNNWTFAVRFTGKVVAAETKSREGLVRVDIDGDGADARVQIGPA 127 (206)
T ss_pred ccCCCCeEEEEEeeEEEEeeeccccceEEEecCCCcceEEEEeccc
Confidence 34555 67899 44410 135677889999999888999999875
Done!