Query 004410
Match_columns 755
No_of_seqs 984 out of 4339
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 22:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 1.3E-82 2.9E-87 692.0 46.2 674 1-755 1-712 (712)
2 KOG0271 Notchless-like WD40 re 100.0 4.2E-43 9E-48 349.1 26.3 336 225-593 105-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1E-40 2.2E-45 336.7 22.3 278 236-593 176-458 (459)
4 KOG0286 G-protein beta subunit 100.0 2.6E-36 5.6E-41 291.7 31.9 293 229-593 49-343 (343)
5 KOG0271 Notchless-like WD40 re 100.0 8.4E-37 1.8E-41 304.2 28.1 312 256-598 87-442 (480)
6 KOG0315 G-protein beta subunit 100.0 6.1E-36 1.3E-40 282.9 30.3 282 248-602 11-295 (311)
7 KOG0279 G protein beta subunit 100.0 6.3E-36 1.4E-40 287.6 30.3 294 227-595 7-313 (315)
8 KOG0272 U4/U6 small nuclear ri 100.0 3.8E-35 8.3E-40 296.4 21.1 264 282-626 173-442 (459)
9 KOG0265 U5 snRNP-specific prot 100.0 9.2E-34 2E-38 275.3 25.7 299 223-593 35-336 (338)
10 KOG0318 WD40 repeat stress pro 100.0 3.1E-32 6.8E-37 281.8 36.7 336 230-598 185-563 (603)
11 KOG0284 Polyadenylation factor 100.0 7.6E-35 1.6E-39 292.9 17.0 280 238-597 99-382 (464)
12 KOG0291 WD40-repeat-containing 100.0 7.1E-32 1.5E-36 289.3 39.1 351 235-598 96-553 (893)
13 KOG0263 Transcription initiati 100.0 1.7E-33 3.8E-38 305.3 26.6 250 235-556 378-654 (707)
14 KOG0282 mRNA splicing factor [ 100.0 3.8E-34 8.2E-39 293.9 20.2 253 275-598 205-465 (503)
15 KOG0645 WD40 repeat protein [G 100.0 1.9E-32 4.1E-37 262.6 28.7 291 225-595 4-311 (312)
16 KOG0279 G protein beta subunit 100.0 5.7E-32 1.2E-36 260.4 29.9 277 278-625 9-292 (315)
17 KOG0291 WD40-repeat-containing 100.0 2.2E-31 4.7E-36 285.7 31.3 283 236-598 308-615 (893)
18 KOG0295 WD40 repeat-containing 100.0 6.2E-32 1.3E-36 268.6 25.1 285 230-594 103-405 (406)
19 KOG0296 Angio-associated migra 100.0 3.9E-31 8.4E-36 263.1 30.7 330 225-595 54-398 (399)
20 KOG0285 Pleiotropic regulator 100.0 7E-32 1.5E-36 267.0 25.0 297 220-597 133-441 (460)
21 KOG0319 WD40-repeat-containing 100.0 4.3E-31 9.4E-36 283.4 33.0 359 234-610 104-595 (775)
22 KOG0273 Beta-transducin family 100.0 1.2E-31 2.6E-36 274.3 26.8 290 234-598 177-485 (524)
23 cd00200 WD40 WD40 domain, foun 100.0 2.4E-30 5.2E-35 268.8 36.5 284 229-593 3-289 (289)
24 KOG0293 WD40 repeat-containing 100.0 6E-32 1.3E-36 271.9 22.0 299 224-597 213-515 (519)
25 KOG0273 Beta-transducin family 100.0 9E-31 2E-35 267.9 30.9 277 236-595 236-523 (524)
26 KOG0286 G-protein beta subunit 100.0 1.8E-30 3.9E-35 251.4 30.9 270 278-620 49-330 (343)
27 KOG0266 WD40 repeat-containing 100.0 5.7E-31 1.2E-35 293.6 31.7 293 228-595 151-454 (456)
28 KOG0318 WD40 repeat stress pro 100.0 6.9E-30 1.5E-34 264.5 37.1 363 231-627 55-541 (603)
29 KOG0319 WD40-repeat-containing 100.0 1.4E-30 3.1E-35 279.5 31.5 335 235-598 62-538 (775)
30 PLN00181 protein SPA1-RELATED; 100.0 1.1E-29 2.4E-34 303.7 40.2 297 231-594 479-792 (793)
31 KOG0265 U5 snRNP-specific prot 100.0 3.2E-30 6.9E-35 250.7 25.6 257 278-604 41-305 (338)
32 KOG0263 Transcription initiati 100.0 1.1E-30 2.3E-35 283.7 23.3 272 284-598 378-652 (707)
33 KOG0281 Beta-TrCP (transducin 100.0 1.3E-31 2.9E-36 263.7 14.3 266 243-598 203-480 (499)
34 KOG0306 WD40-repeat-containing 100.0 8.3E-29 1.8E-33 265.8 36.6 360 227-598 99-583 (888)
35 KOG0292 Vesicle coat complex C 100.0 1.1E-29 2.3E-34 276.1 28.0 288 232-599 6-325 (1202)
36 KOG0282 mRNA splicing factor [ 100.0 1.1E-30 2.4E-35 268.5 17.3 289 227-593 206-503 (503)
37 KOG0315 G-protein beta subunit 100.0 1.6E-28 3.5E-33 232.7 27.5 264 230-573 35-308 (311)
38 KOG0316 Conserved WD40 repeat- 100.0 7.1E-29 1.5E-33 233.2 23.2 244 278-599 11-261 (307)
39 KOG0276 Vesicle coat complex C 100.0 6.6E-29 1.4E-33 261.4 25.6 286 233-599 11-302 (794)
40 KOG0295 WD40 repeat-containing 100.0 3.5E-29 7.5E-34 249.1 22.2 253 276-601 100-370 (406)
41 KOG0316 Conserved WD40 repeat- 100.0 1.3E-28 2.9E-33 231.4 24.4 285 226-593 8-297 (307)
42 KOG0288 WD40 repeat protein Ti 100.0 1.5E-29 3.2E-34 255.3 17.8 289 230-593 170-459 (459)
43 KOG0266 WD40 repeat-containing 100.0 9.5E-28 2.1E-32 267.7 33.7 250 279-598 153-412 (456)
44 KOG0285 Pleiotropic regulator 100.0 7E-29 1.5E-33 245.8 21.1 246 277-598 144-392 (460)
45 KOG0313 Microtubule binding pr 100.0 4.2E-28 9.1E-33 242.6 26.3 283 235-595 105-418 (423)
46 KOG0275 Conserved WD40 repeat- 100.0 3.8E-29 8.2E-34 244.2 17.7 287 236-593 214-507 (508)
47 KOG0284 Polyadenylation factor 100.0 1.7E-29 3.7E-34 254.4 15.3 242 231-551 134-380 (464)
48 PLN00181 protein SPA1-RELATED; 100.0 5.2E-27 1.1E-31 280.8 38.7 276 256-597 457-740 (793)
49 KOG0278 Serine/threonine kinas 100.0 7.2E-29 1.6E-33 235.0 15.5 283 233-598 12-300 (334)
50 KOG0645 WD40 repeat protein [G 100.0 1.6E-27 3.5E-32 228.8 24.7 249 232-551 58-311 (312)
51 KOG0293 WD40 repeat-containing 100.0 6.8E-28 1.5E-32 242.8 21.6 264 274-607 214-482 (519)
52 KOG0643 Translation initiation 100.0 7.9E-27 1.7E-31 223.4 26.8 287 230-597 5-319 (327)
53 KOG0973 Histone transcription 100.0 2.9E-27 6.3E-32 265.3 27.6 319 220-598 4-358 (942)
54 KOG0650 WD40 repeat nucleolar 100.0 9.4E-28 2E-32 251.8 21.0 385 153-592 324-732 (733)
55 KOG0310 Conserved WD40 repeat- 100.0 1.5E-26 3.2E-31 238.7 29.0 283 235-598 26-312 (487)
56 cd00200 WD40 WD40 domain, foun 100.0 9.5E-26 2.1E-30 234.2 34.8 247 278-598 3-252 (289)
57 KOG0275 Conserved WD40 repeat- 100.0 8E-28 1.7E-32 235.0 17.4 258 282-600 211-472 (508)
58 KOG0640 mRNA cleavage stimulat 100.0 4.3E-27 9.3E-32 229.1 21.6 301 229-594 106-425 (430)
59 KOG0772 Uncharacterized conser 100.0 4.3E-27 9.4E-32 243.0 22.5 307 227-594 159-486 (641)
60 KOG0268 Sof1-like rRNA process 100.0 9.9E-28 2.2E-32 238.3 16.1 293 223-599 53-349 (433)
61 KOG0276 Vesicle coat complex C 100.0 1.7E-26 3.7E-31 243.3 25.9 235 236-547 56-295 (794)
62 KOG0306 WD40-repeat-containing 100.0 3.2E-26 6.9E-31 246.0 27.5 283 231-597 369-666 (888)
63 KOG0647 mRNA export protein (c 99.9 6.4E-26 1.4E-30 220.9 26.1 274 235-584 27-312 (347)
64 KOG1407 WD40 repeat protein [F 99.9 4.7E-26 1E-30 217.5 24.7 269 278-628 14-284 (313)
65 PTZ00421 coronin; Provisional 99.9 2.3E-25 5E-30 247.7 34.4 293 238-596 23-332 (493)
66 KOG0641 WD40 repeat protein [G 99.9 7.4E-25 1.6E-29 204.7 31.4 292 236-595 33-349 (350)
67 KOG0281 Beta-TrCP (transducin 99.9 1.2E-27 2.6E-32 236.0 13.1 231 283-598 196-431 (499)
68 KOG0277 Peroxisomal targeting 99.9 1.6E-26 3.5E-31 219.9 20.2 281 240-594 13-308 (311)
69 KOG0292 Vesicle coat complex C 99.9 1.8E-26 3.9E-31 251.2 22.2 255 281-599 6-284 (1202)
70 KOG0305 Anaphase promoting com 99.9 1.7E-25 3.6E-30 240.1 28.8 273 241-598 183-464 (484)
71 KOG0299 U3 snoRNP-associated p 99.9 7.7E-26 1.7E-30 231.7 24.7 301 228-593 135-454 (479)
72 KOG0274 Cdc4 and related F-box 99.9 1.9E-25 4.2E-30 248.6 29.9 274 237-600 210-487 (537)
73 KOG1446 Histone H3 (Lys4) meth 99.9 1.5E-24 3.3E-29 213.5 32.1 294 275-597 5-305 (311)
74 KOG0313 Microtubule binding pr 99.9 6.8E-26 1.5E-30 226.8 22.8 275 227-552 136-419 (423)
75 KOG0283 WD40 repeat-containing 99.9 7.4E-26 1.6E-30 248.3 23.9 248 233-552 265-577 (712)
76 KOG1407 WD40 repeat protein [F 99.9 5.5E-25 1.2E-29 210.3 25.9 285 230-595 15-311 (313)
77 KOG0289 mRNA splicing factor [ 99.9 4.9E-25 1.1E-29 223.8 26.4 276 241-594 225-505 (506)
78 KOG0294 WD40 repeat-containing 99.9 1E-24 2.2E-29 213.7 27.5 270 250-598 4-284 (362)
79 PTZ00420 coronin; Provisional 99.9 3.7E-24 8E-29 239.1 35.4 254 253-577 50-318 (568)
80 KOG0296 Angio-associated migra 99.9 9.1E-25 2E-29 217.9 26.4 297 278-599 58-360 (399)
81 PTZ00421 coronin; Provisional 99.9 2.8E-24 6.1E-29 239.1 33.2 258 283-598 19-293 (493)
82 KOG0300 WD40 repeat-containing 99.9 3.1E-25 6.7E-30 216.5 20.1 332 227-598 140-479 (481)
83 KOG0288 WD40 repeat protein Ti 99.9 1E-25 2.3E-30 227.6 15.1 269 279-627 170-442 (459)
84 KOG1036 Mitotic spindle checkp 99.9 6.5E-24 1.4E-28 208.0 26.4 273 235-585 13-294 (323)
85 KOG0277 Peroxisomal targeting 99.9 6.4E-25 1.4E-29 209.0 18.6 239 236-549 61-307 (311)
86 KOG0310 Conserved WD40 repeat- 99.9 1.8E-24 3.9E-29 223.4 23.3 234 235-549 68-307 (487)
87 KOG0278 Serine/threonine kinas 99.9 4.4E-25 9.5E-30 209.4 14.6 246 228-552 52-298 (334)
88 KOG1036 Mitotic spindle checkp 99.9 3.3E-23 7.1E-28 203.1 27.7 273 283-628 12-297 (323)
89 KOG0308 Conserved WD40 repeat- 99.9 1.4E-24 3E-29 230.4 19.4 279 245-596 35-328 (735)
90 KOG0647 mRNA export protein (c 99.9 2.6E-23 5.5E-28 202.8 26.5 270 283-622 26-310 (347)
91 KOG0643 Translation initiation 99.9 2.5E-23 5.4E-28 199.5 25.4 232 280-585 6-251 (327)
92 KOG0640 mRNA cleavage stimulat 99.9 3.3E-24 7.2E-29 209.0 19.0 267 278-600 106-388 (430)
93 KOG0772 Uncharacterized conser 99.9 3.9E-24 8.4E-29 221.3 20.5 257 279-598 162-448 (641)
94 PTZ00420 coronin; Provisional 99.9 1.3E-22 2.9E-27 226.6 33.9 208 381-598 67-296 (568)
95 KOG1408 WD40 repeat protein [F 99.9 2.4E-23 5.2E-28 222.0 24.6 321 241-598 330-716 (1080)
96 KOG1063 RNA polymerase II elon 99.9 3.6E-23 7.8E-28 221.2 25.8 348 224-598 180-651 (764)
97 KOG1539 WD repeat protein [Gen 99.9 1.9E-22 4.2E-27 219.7 31.6 345 228-596 237-649 (910)
98 KOG0639 Transducin-like enhanc 99.9 8.6E-24 1.9E-28 217.7 19.8 278 238-594 422-703 (705)
99 KOG0305 Anaphase promoting com 99.9 2.4E-23 5.2E-28 223.5 23.7 240 235-553 217-463 (484)
100 KOG0264 Nucleosome remodeling 99.9 1.9E-23 4E-28 214.6 21.8 256 282-596 122-405 (422)
101 KOG2106 Uncharacterized conser 99.9 3.6E-22 7.7E-27 206.3 31.0 343 237-625 248-607 (626)
102 KOG1539 WD repeat protein [Gen 99.9 3.4E-22 7.3E-27 217.8 32.5 333 230-598 197-609 (910)
103 KOG0301 Phospholipase A2-activ 99.9 6.7E-23 1.5E-27 219.3 26.0 278 230-596 9-289 (745)
104 KOG0264 Nucleosome remodeling 99.9 2.1E-23 4.6E-28 214.2 21.1 264 234-552 123-405 (422)
105 KOG2106 Uncharacterized conser 99.9 2.9E-21 6.3E-26 199.6 35.9 331 229-600 194-525 (626)
106 KOG2096 WD40 repeat protein [G 99.9 1.8E-22 3.8E-27 197.9 25.5 300 278-594 80-401 (420)
107 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.5E-21 5.5E-26 204.7 35.1 275 247-598 1-282 (300)
108 KOG0973 Histone transcription 99.9 1.2E-22 2.5E-27 228.5 24.6 256 226-552 60-356 (942)
109 KOG0299 U3 snoRNP-associated p 99.9 2.5E-22 5.5E-27 206.0 23.9 264 279-599 137-414 (479)
110 KOG1332 Vesicle coat complex C 99.9 8.6E-23 1.9E-27 193.6 18.2 252 281-597 8-288 (299)
111 KOG0269 WD40 repeat-containing 99.9 6.1E-23 1.3E-27 222.0 19.4 291 237-598 41-343 (839)
112 KOG1332 Vesicle coat complex C 99.9 8.6E-23 1.9E-27 193.6 17.5 251 231-551 7-286 (299)
113 KOG0289 mRNA splicing factor [ 99.9 8E-22 1.7E-26 200.6 25.6 237 285-594 220-461 (506)
114 KOG0641 WD40 repeat protein [G 99.9 2.2E-21 4.8E-26 181.5 26.2 248 232-550 86-348 (350)
115 KOG0308 Conserved WD40 repeat- 99.9 8.9E-23 1.9E-27 216.8 19.1 248 283-598 20-288 (735)
116 KOG2055 WD40 repeat protein [G 99.9 4.5E-22 9.8E-27 204.0 22.8 290 236-595 214-512 (514)
117 KOG0274 Cdc4 and related F-box 99.9 8.6E-22 1.9E-26 219.5 27.1 236 283-600 207-446 (537)
118 KOG0294 WD40 repeat-containing 99.9 7.9E-22 1.7E-26 193.5 23.0 247 225-553 33-283 (362)
119 KOG2096 WD40 repeat protein [G 99.9 5.3E-22 1.2E-26 194.5 21.5 215 381-607 79-320 (420)
120 KOG1274 WD40 repeat protein [G 99.9 2.2E-21 4.9E-26 213.8 28.8 254 281-598 10-265 (933)
121 KOG0646 WD40 repeat protein [G 99.9 4.9E-22 1.1E-26 204.4 21.8 228 235-531 81-330 (476)
122 KOG4283 Transcription-coupled 99.9 3.8E-21 8.2E-26 186.7 25.2 294 232-594 40-364 (397)
123 KOG0300 WD40 repeat-containing 99.9 1.8E-21 4E-26 190.3 19.4 248 277-598 141-431 (481)
124 KOG0268 Sof1-like rRNA process 99.9 3.6E-22 7.8E-27 199.0 14.4 242 279-598 61-305 (433)
125 KOG2445 Nuclear pore complex c 99.9 6.5E-21 1.4E-25 186.5 22.6 262 232-551 10-318 (361)
126 KOG0321 WD40 repeat-containing 99.9 6.2E-21 1.3E-25 202.5 22.5 283 247-598 64-394 (720)
127 KOG0270 WD40 repeat-containing 99.9 7.4E-21 1.6E-25 194.6 21.6 306 240-598 130-452 (463)
128 KOG1446 Histone H3 (Lys4) meth 99.9 2E-19 4.3E-24 177.6 30.5 215 378-600 46-267 (311)
129 KOG0267 Microtubule severing p 99.9 3.1E-22 6.7E-27 214.9 10.8 256 245-587 2-260 (825)
130 KOG2445 Nuclear pore complex c 99.9 1.3E-19 2.8E-24 177.5 26.8 252 281-595 10-318 (361)
131 KOG1273 WD40 repeat protein [G 99.9 4.5E-20 9.8E-25 180.9 23.1 286 238-598 26-325 (405)
132 KOG4328 WD40 protein [Function 99.9 3.6E-20 7.7E-25 190.1 23.3 296 230-595 181-495 (498)
133 KOG1274 WD40 repeat protein [G 99.9 2E-19 4.4E-24 198.5 28.6 276 233-592 11-297 (933)
134 KOG0302 Ribosome Assembly prot 99.9 4.2E-20 9.2E-25 185.2 21.1 259 279-588 146-432 (440)
135 KOG2048 WD40 repeat protein [G 99.9 6.4E-19 1.4E-23 188.8 30.8 284 231-596 21-320 (691)
136 KOG0267 Microtubule severing p 99.9 1.2E-21 2.7E-26 210.4 10.1 236 229-543 22-260 (825)
137 KOG1273 WD40 repeat protein [G 99.9 5.3E-20 1.2E-24 180.4 20.7 242 287-598 26-283 (405)
138 KOG0646 WD40 repeat protein [G 99.8 1.3E-19 2.7E-24 186.7 23.7 201 387-598 80-310 (476)
139 KOG0269 WD40 repeat-containing 99.8 2.9E-20 6.3E-25 201.4 19.5 218 391-626 90-319 (839)
140 KOG0270 WD40 repeat-containing 99.8 4.5E-20 9.7E-25 188.9 19.4 241 246-554 191-452 (463)
141 KOG0301 Phospholipase A2-activ 99.8 1.1E-19 2.4E-24 194.9 23.2 259 276-614 6-269 (745)
142 KOG1009 Chromatin assembly com 99.8 1.4E-19 3E-24 183.4 22.5 308 236-598 14-375 (434)
143 KOG0302 Ribosome Assembly prot 99.8 4.9E-20 1.1E-24 184.7 19.0 240 246-546 164-434 (440)
144 KOG1063 RNA polymerase II elon 99.8 3.7E-19 8.1E-24 190.7 25.1 344 231-596 263-700 (764)
145 KOG4283 Transcription-coupled 99.8 2.5E-19 5.4E-24 174.2 21.2 227 282-556 41-281 (397)
146 KOG1408 WD40 repeat protein [F 99.8 8E-20 1.7E-24 195.4 19.4 250 224-551 448-713 (1080)
147 KOG2048 WD40 repeat protein [G 99.8 2.8E-18 6E-23 184.0 29.8 250 284-599 25-279 (691)
148 KOG0639 Transducin-like enhanc 99.8 7.4E-20 1.6E-24 188.9 15.7 237 236-550 466-703 (705)
149 KOG1445 Tumor-specific antigen 99.8 7.2E-19 1.6E-23 185.8 21.4 124 472-598 629-753 (1012)
150 KOG0321 WD40 repeat-containing 99.8 7.8E-19 1.7E-23 186.7 20.3 217 381-598 93-350 (720)
151 KOG1538 Uncharacterized conser 99.8 1.7E-18 3.7E-23 184.0 22.4 272 237-596 14-294 (1081)
152 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.4E-17 7.3E-22 173.1 32.8 253 238-575 33-300 (300)
153 KOG1034 Transcriptional repres 99.8 2.9E-18 6.3E-23 169.4 20.8 291 234-595 37-383 (385)
154 KOG4328 WD40 protein [Function 99.8 3.2E-18 6.9E-23 175.8 21.5 259 276-598 178-453 (498)
155 KOG0307 Vesicle coat complex C 99.8 6E-19 1.3E-23 199.6 16.4 249 236-553 65-329 (1049)
156 KOG2055 WD40 repeat protein [G 99.8 8.7E-18 1.9E-22 172.8 22.6 246 284-598 213-470 (514)
157 KOG4378 Nuclear protein COP1 [ 99.8 2.5E-18 5.4E-23 177.6 17.5 219 237-530 81-303 (673)
158 KOG1188 WD40 repeat protein [G 99.8 4.6E-18 9.9E-23 169.0 18.1 280 248-595 41-346 (376)
159 KOG0650 WD40 repeat nucleolar 99.8 1.1E-17 2.3E-22 176.7 21.8 272 278-593 394-678 (733)
160 KOG0303 Actin-binding protein 99.8 1.7E-17 3.8E-22 167.4 21.9 265 247-576 44-320 (472)
161 KOG4378 Nuclear protein COP1 [ 99.8 1.3E-17 2.8E-22 172.3 21.4 268 305-598 11-283 (673)
162 KOG0307 Vesicle coat complex C 99.8 1.4E-18 3.1E-23 196.6 14.2 291 239-598 10-330 (1049)
163 KOG0642 Cell-cycle nuclear pro 99.8 2E-18 4.4E-23 181.7 13.7 261 278-598 288-564 (577)
164 KOG4227 WD40 repeat protein [G 99.8 3.7E-17 8E-22 164.3 21.6 301 230-594 51-386 (609)
165 KOG0303 Actin-binding protein 99.8 2.3E-17 5.1E-22 166.5 20.1 227 363-598 56-297 (472)
166 KOG2919 Guanine nucleotide-bin 99.8 1.5E-16 3.3E-21 156.9 24.4 281 240-586 54-361 (406)
167 KOG1517 Guanine nucleotide bin 99.8 1.2E-16 2.5E-21 178.4 26.2 302 238-598 1067-1384(1387)
168 KOG0642 Cell-cycle nuclear pro 99.8 8.5E-18 1.8E-22 177.1 15.9 279 216-557 276-567 (577)
169 KOG1445 Tumor-specific antigen 99.8 6.9E-17 1.5E-21 171.0 21.2 203 390-599 629-848 (1012)
170 COG2319 FOG: WD40 repeat [Gene 99.7 7E-15 1.5E-19 161.0 37.6 290 230-598 60-362 (466)
171 KOG2919 Guanine nucleotide-bin 99.7 3.9E-16 8.5E-21 154.0 21.9 249 287-596 52-328 (406)
172 PRK11028 6-phosphogluconolacto 99.7 5.9E-15 1.3E-19 159.0 33.1 278 251-596 6-305 (330)
173 KOG1587 Cytoplasmic dynein int 99.7 4.8E-16 1E-20 172.2 24.7 270 257-597 222-518 (555)
174 KOG0644 Uncharacterized conser 99.7 1E-17 2.2E-22 182.6 11.0 285 226-598 181-471 (1113)
175 KOG1034 Transcriptional repres 99.7 3.1E-17 6.8E-22 162.2 13.4 230 247-550 105-382 (385)
176 KOG4227 WD40 repeat protein [G 99.7 1.5E-16 3.4E-21 159.8 18.3 260 276-597 48-324 (609)
177 KOG1007 WD repeat protein TSSC 99.7 2.7E-16 5.9E-21 152.9 19.0 261 233-551 61-361 (370)
178 KOG0322 G-protein beta subunit 99.7 3.5E-16 7.6E-21 150.5 18.8 292 229-550 8-322 (323)
179 COG2319 FOG: WD40 repeat [Gene 99.7 8.1E-14 1.8E-18 152.6 40.4 318 239-596 113-443 (466)
180 KOG0649 WD40 repeat protein [G 99.7 6.2E-15 1.3E-19 140.3 26.4 286 237-593 12-314 (325)
181 KOG1963 WD40 repeat protein [G 99.7 4.6E-15 9.9E-20 164.3 28.7 289 235-596 205-539 (792)
182 KOG0322 G-protein beta subunit 99.7 1.2E-16 2.6E-21 153.6 13.7 159 427-594 149-322 (323)
183 KOG1963 WD40 repeat protein [G 99.7 1.4E-14 3.1E-19 160.5 29.9 334 240-598 21-378 (792)
184 KOG1188 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 151.1 18.8 194 401-600 42-247 (376)
185 KOG0290 Conserved WD40 repeat- 99.7 1.8E-15 4E-20 147.3 17.9 243 235-542 96-357 (364)
186 KOG0644 Uncharacterized conser 99.7 6E-17 1.3E-21 176.6 8.3 272 270-624 176-457 (1113)
187 KOG1310 WD40 repeat protein [G 99.7 3.5E-16 7.5E-21 163.7 13.1 241 274-600 40-308 (758)
188 KOG0290 Conserved WD40 repeat- 99.7 1.1E-14 2.3E-19 142.1 22.4 272 248-585 60-356 (364)
189 KOG1240 Protein kinase contain 99.7 2.7E-14 5.9E-19 162.3 29.0 259 278-598 1042-1337(1431)
190 KOG1538 Uncharacterized conser 99.6 4.6E-15 1E-19 158.2 18.5 234 286-595 14-252 (1081)
191 KOG1334 WD40 repeat protein [G 99.6 1.3E-15 2.9E-20 157.8 13.7 302 228-598 135-469 (559)
192 KOG2110 Uncharacterized conser 99.6 4.7E-13 1E-17 135.0 31.3 281 285-597 6-332 (391)
193 KOG1524 WD40 repeat-containing 99.6 9.6E-15 2.1E-19 152.6 18.8 269 282-592 12-283 (737)
194 KOG1007 WD repeat protein TSSC 99.6 6.2E-14 1.3E-18 136.7 22.5 276 256-597 39-363 (370)
195 KOG1524 WD40 repeat-containing 99.6 1.8E-14 3.9E-19 150.6 19.7 208 248-498 76-284 (737)
196 KOG1523 Actin-related protein 99.6 4.5E-14 9.8E-19 139.7 21.3 248 284-594 10-277 (361)
197 KOG1240 Protein kinase contain 99.6 4.4E-14 9.6E-19 160.6 23.1 307 232-593 1045-1431(1431)
198 PRK01742 tolB translocation pr 99.6 4.5E-14 9.7E-19 157.2 22.3 234 256-576 183-426 (429)
199 KOG0771 Prolactin regulatory e 99.6 1.3E-14 2.8E-19 148.9 15.2 192 288-551 148-354 (398)
200 KOG0649 WD40 repeat protein [G 99.6 1.6E-13 3.5E-18 130.7 21.4 247 285-595 11-274 (325)
201 KOG1009 Chromatin assembly com 99.6 1.9E-13 4.1E-18 139.3 23.0 258 285-599 14-333 (434)
202 KOG1587 Cytoplasmic dynein int 99.6 6.4E-14 1.4E-18 155.5 21.1 251 235-502 242-518 (555)
203 KOG1334 WD40 repeat protein [G 99.6 1.3E-14 2.7E-19 150.6 14.2 292 273-630 131-459 (559)
204 KOG1517 Guanine nucleotide bin 99.6 2.2E-13 4.7E-18 152.7 24.3 271 285-622 1065-1368(1387)
205 KOG0771 Prolactin regulatory e 99.6 7.5E-14 1.6E-18 143.3 16.7 202 239-460 148-355 (398)
206 KOG2321 WD40 repeat protein [G 99.6 4.4E-13 9.6E-18 141.7 21.7 280 282-597 49-345 (703)
207 KOG1310 WD40 repeat protein [G 99.6 5E-14 1.1E-18 147.7 14.5 227 222-506 34-309 (758)
208 KOG2394 WD40 protein DMR-N9 [G 99.5 6.5E-13 1.4E-17 139.5 22.1 191 397-598 182-455 (636)
209 PRK03629 tolB translocation pr 99.5 1.9E-12 4.2E-17 143.9 27.0 233 257-575 179-427 (429)
210 KOG1523 Actin-related protein 99.5 6E-13 1.3E-17 131.8 19.4 205 235-503 10-239 (361)
211 PRK11028 6-phosphogluconolacto 99.5 5.5E-12 1.2E-16 135.8 28.3 245 237-552 36-305 (330)
212 KOG2139 WD40 repeat protein [G 99.5 4.1E-12 8.8E-17 127.7 24.8 295 241-595 104-431 (445)
213 PRK01742 tolB translocation pr 99.5 9E-13 2E-17 146.8 21.7 195 384-595 199-401 (429)
214 KOG4497 Uncharacterized conser 99.5 4.2E-12 9.1E-17 126.0 22.9 282 241-598 14-394 (447)
215 PRK05137 tolB translocation pr 99.5 8.5E-12 1.8E-16 139.4 27.9 232 257-575 182-432 (435)
216 KOG1354 Serine/threonine prote 99.5 2.2E-12 4.9E-17 128.7 20.2 285 235-551 25-359 (433)
217 KOG2111 Uncharacterized conser 99.5 5E-11 1.1E-15 118.4 28.7 199 387-595 93-322 (346)
218 PRK04922 tolB translocation pr 99.5 6E-12 1.3E-16 140.5 24.9 233 257-575 184-432 (433)
219 KOG2315 Predicted translation 99.5 3.6E-11 7.9E-16 127.6 28.9 311 240-598 39-393 (566)
220 KOG2394 WD40 protein DMR-N9 [G 99.4 2.7E-12 5.8E-17 135.0 17.5 200 243-480 181-384 (636)
221 KOG1272 WD40-repeat-containing 99.4 3.7E-13 8.1E-18 139.0 10.9 229 286-593 131-360 (545)
222 PRK03629 tolB translocation pr 99.4 5.1E-11 1.1E-15 132.5 28.5 198 385-597 195-408 (429)
223 PRK02889 tolB translocation pr 99.4 2E-11 4.2E-16 135.9 25.1 218 280-575 191-424 (427)
224 KOG2110 Uncharacterized conser 99.4 3.4E-11 7.3E-16 121.8 23.8 195 390-598 48-251 (391)
225 KOG4497 Uncharacterized conser 99.4 6.9E-13 1.5E-17 131.5 11.5 189 389-596 49-241 (447)
226 PRK05137 tolB translocation pr 99.4 5.3E-11 1.1E-15 133.0 28.0 202 382-598 195-415 (435)
227 COG5354 Uncharacterized protei 99.4 2.8E-10 6.2E-15 119.5 28.4 315 238-598 35-398 (561)
228 TIGR02800 propeller_TolB tol-p 99.4 6.4E-11 1.4E-15 132.0 25.6 204 257-543 170-386 (417)
229 PF02239 Cytochrom_D1: Cytochr 99.4 6.8E-10 1.5E-14 120.2 31.6 275 250-598 9-350 (369)
230 KOG2111 Uncharacterized conser 99.4 3.5E-10 7.5E-15 112.5 25.5 179 409-598 75-259 (346)
231 PRK04922 tolB translocation pr 99.4 1.1E-10 2.4E-15 130.3 25.0 202 381-597 196-413 (433)
232 PF08662 eIF2A: Eukaryotic tra 99.4 6.9E-11 1.5E-15 116.3 20.2 112 388-503 59-182 (194)
233 KOG3881 Uncharacterized conser 99.4 9.2E-11 2E-15 119.5 20.9 203 386-598 103-323 (412)
234 PRK02889 tolB translocation pr 99.3 2.5E-10 5.4E-15 127.1 26.4 196 384-594 191-402 (427)
235 KOG3881 Uncharacterized conser 99.3 1.2E-10 2.6E-15 118.7 21.2 247 236-553 56-322 (412)
236 KOG1272 WD40-repeat-containing 99.3 2.9E-12 6.4E-17 132.5 9.2 265 241-591 135-405 (545)
237 PF08662 eIF2A: Eukaryotic tra 99.3 1.2E-10 2.5E-15 114.7 19.7 151 241-463 11-183 (194)
238 KOG2139 WD40 repeat protein [G 99.3 1.5E-10 3.1E-15 116.7 19.9 193 388-595 98-309 (445)
239 KOG1354 Serine/threonine prote 99.3 1.4E-10 3.1E-15 116.0 19.6 266 284-598 25-362 (433)
240 PF02239 Cytochrom_D1: Cytochr 99.3 8E-10 1.7E-14 119.6 27.3 286 239-559 40-355 (369)
241 TIGR02800 propeller_TolB tol-p 99.3 7.3E-10 1.6E-14 123.5 26.8 197 384-595 185-397 (417)
242 PF10282 Lactonase: Lactonase, 99.3 1.8E-08 3.9E-13 109.0 36.4 274 257-595 13-322 (345)
243 KOG2321 WD40 repeat protein [G 99.3 5.7E-10 1.2E-14 118.5 21.8 265 237-551 53-343 (703)
244 KOG2041 WD40 repeat protein [G 99.3 3.2E-10 7E-15 122.6 19.4 272 238-583 17-326 (1189)
245 PRK04792 tolB translocation pr 99.2 1.3E-09 2.9E-14 121.7 25.0 218 280-575 213-446 (448)
246 PRK00178 tolB translocation pr 99.2 2.1E-09 4.6E-14 120.2 26.3 232 258-575 180-427 (430)
247 KOG4190 Uncharacterized conser 99.2 5.2E-11 1.1E-15 125.1 11.9 291 227-591 727-1032(1034)
248 KOG1409 Uncharacterized conser 99.2 4E-10 8.7E-15 113.0 17.6 333 229-596 18-395 (404)
249 KOG2314 Translation initiation 99.2 6.5E-09 1.4E-13 110.2 26.4 318 241-597 216-575 (698)
250 PRK00178 tolB translocation pr 99.2 3.9E-09 8.4E-14 118.1 25.5 201 381-596 191-407 (430)
251 KOG0974 WD-repeat protein WDR6 99.2 4.5E-09 9.8E-14 119.3 24.8 149 241-460 139-289 (967)
252 KOG0280 Uncharacterized conser 99.2 4.5E-09 9.8E-14 103.6 21.6 199 391-598 124-336 (339)
253 PF04762 IKI3: IKI3 family; I 99.2 3.2E-08 7E-13 118.4 33.1 330 236-598 76-459 (928)
254 COG2706 3-carboxymuconate cycl 99.1 2.6E-07 5.6E-12 94.4 32.8 276 256-598 15-324 (346)
255 TIGR02658 TTQ_MADH_Hv methylam 99.1 2.6E-07 5.5E-12 98.1 33.8 270 257-598 27-333 (352)
256 KOG0974 WD-repeat protein WDR6 99.1 1.9E-09 4.1E-14 122.3 18.1 198 285-501 88-289 (967)
257 PRK04792 tolB translocation pr 99.1 1.6E-08 3.5E-13 113.1 25.7 196 385-595 214-425 (448)
258 KOG2041 WD40 repeat protein [G 99.1 1.4E-09 3E-14 117.9 15.7 252 284-586 14-279 (1189)
259 PF10282 Lactonase: Lactonase, 99.1 3.7E-07 8E-12 98.8 34.5 255 238-551 39-322 (345)
260 PRK01029 tolB translocation pr 99.1 6E-08 1.3E-12 107.7 27.5 173 391-577 233-426 (428)
261 KOG1064 RAVE (regulator of V-A 99.1 6E-10 1.3E-14 131.5 11.5 227 235-544 2208-2439(2439)
262 KOG4547 WD40 repeat-containing 99.1 3.5E-08 7.6E-13 106.1 23.8 140 401-551 72-220 (541)
263 KOG1409 Uncharacterized conser 99.1 4.2E-09 9E-14 105.8 15.5 267 276-614 16-289 (404)
264 PRK01029 tolB translocation pr 99.1 2.4E-08 5.2E-13 110.9 23.3 114 391-505 283-408 (428)
265 TIGR02658 TTQ_MADH_Hv methylam 99.0 4.8E-07 1E-11 96.0 29.3 246 242-507 52-337 (352)
266 KOG4547 WD40 repeat-containing 99.0 1.3E-07 2.7E-12 102.0 24.6 191 244-501 2-221 (541)
267 PF04762 IKI3: IKI3 family; I 99.0 2.1E-06 4.6E-11 103.0 36.5 346 235-598 120-567 (928)
268 KOG4532 WD40-like repeat conta 99.0 1.8E-07 4E-12 91.2 22.0 192 401-598 130-334 (344)
269 COG5170 CDC55 Serine/threonine 98.9 7.8E-09 1.7E-13 102.3 12.4 244 235-503 26-312 (460)
270 PLN02919 haloacid dehalogenase 98.9 8E-07 1.7E-11 108.7 32.3 208 390-598 625-891 (1057)
271 KOG0280 Uncharacterized conser 98.9 5.5E-08 1.2E-12 96.0 17.8 233 249-548 87-330 (339)
272 KOG1912 WD40 repeat protein [G 98.9 8.1E-08 1.8E-12 105.6 20.6 353 248-625 80-572 (1062)
273 KOG2315 Predicted translation 98.9 3.5E-07 7.6E-12 97.9 24.6 278 239-552 77-391 (566)
274 COG4946 Uncharacterized protei 98.9 5.2E-06 1.1E-10 87.1 32.1 188 397-598 275-480 (668)
275 PLN02919 haloacid dehalogenase 98.9 1E-06 2.2E-11 107.7 30.9 267 240-554 572-891 (1057)
276 COG2706 3-carboxymuconate cycl 98.8 7.8E-06 1.7E-10 83.8 29.2 261 237-558 41-328 (346)
277 TIGR03300 assembly_YfgL outer 98.8 4.1E-06 8.9E-11 92.0 29.4 298 246-592 64-376 (377)
278 COG4946 Uncharacterized protei 98.8 1E-05 2.2E-10 85.0 29.8 275 246-596 331-655 (668)
279 KOG1064 RAVE (regulator of V-A 98.8 2.7E-08 5.9E-13 118.0 11.3 190 386-598 2206-2401(2439)
280 KOG4190 Uncharacterized conser 98.8 2E-08 4.3E-13 106.0 9.1 246 278-594 729-987 (1034)
281 COG5354 Uncharacterized protei 98.8 2.4E-06 5.3E-11 90.5 24.2 308 237-587 73-421 (561)
282 PRK04043 tolB translocation pr 98.8 3E-06 6.4E-11 93.7 26.3 191 390-597 189-402 (419)
283 KOG3914 WD repeat protein WDR4 98.8 6.2E-08 1.3E-12 99.8 11.8 81 383-465 146-229 (390)
284 PF15492 Nbas_N: Neuroblastoma 98.7 5E-06 1.1E-10 82.8 24.5 187 391-598 46-262 (282)
285 KOG1912 WD40 repeat protein [G 98.7 1E-06 2.3E-11 97.1 20.5 282 238-598 18-367 (1062)
286 PRK04043 tolB translocation pr 98.7 4.2E-06 9.2E-11 92.4 24.7 139 389-541 233-387 (419)
287 PF08450 SGL: SMP-30/Gluconola 98.7 5.3E-05 1.1E-09 77.8 31.4 185 391-584 42-244 (246)
288 COG5170 CDC55 Serine/threonine 98.7 1.5E-07 3.2E-12 93.4 10.7 246 284-598 26-312 (460)
289 KOG0309 Conserved WD40 repeat- 98.7 8E-08 1.7E-12 105.0 9.5 197 221-487 58-262 (1081)
290 PF13360 PQQ_2: PQQ-like domai 98.6 1.9E-05 4.2E-10 80.4 25.7 191 398-598 35-233 (238)
291 KOG3914 WD repeat protein WDR4 98.6 4.7E-07 1E-11 93.4 12.4 103 404-508 127-231 (390)
292 KOG4532 WD40-like repeat conta 98.6 6.9E-06 1.5E-10 80.4 19.4 223 246-540 83-321 (344)
293 KOG0882 Cyclophilin-related pe 98.6 8.6E-07 1.9E-11 92.3 13.5 242 245-506 18-311 (558)
294 PF15492 Nbas_N: Neuroblastoma 98.6 6.6E-05 1.4E-09 74.9 26.0 247 241-559 3-267 (282)
295 KOG0309 Conserved WD40 repeat- 98.6 4.6E-07 1E-11 99.2 11.8 202 391-600 70-282 (1081)
296 TIGR03300 assembly_YfgL outer 98.5 3.6E-05 7.8E-10 84.5 24.8 191 399-598 105-300 (377)
297 KOG4714 Nucleoporin [Nuclear s 98.5 2.7E-06 5.8E-11 83.0 13.4 94 408-501 158-255 (319)
298 KOG4714 Nucleoporin [Nuclear s 98.4 3.4E-06 7.4E-11 82.2 13.6 70 391-460 182-255 (319)
299 PRK11138 outer membrane biogen 98.4 0.00037 8E-09 77.0 31.0 305 247-594 69-393 (394)
300 KOG1832 HIV-1 Vpr-binding prot 98.4 1.4E-07 3.1E-12 104.9 3.2 199 225-506 1091-1297(1516)
301 KOG1275 PAB-dependent poly(A) 98.4 1.3E-05 2.8E-10 90.4 18.1 183 401-600 149-346 (1118)
302 PF07433 DUF1513: Protein of u 98.4 0.00019 4.1E-09 73.9 25.3 250 236-499 5-284 (305)
303 PF08450 SGL: SMP-30/Gluconola 98.4 0.00047 1E-08 70.8 28.9 219 241-540 5-244 (246)
304 PF00400 WD40: WD domain, G-be 98.4 7.4E-07 1.6E-11 62.7 5.4 36 277-312 4-39 (39)
305 KOG2314 Translation initiation 98.3 0.00014 3E-09 78.1 22.6 290 287-596 213-526 (698)
306 KOG2695 WD40 repeat protein [G 98.3 3E-06 6.5E-11 85.7 9.2 140 387-530 251-402 (425)
307 KOG2066 Vacuolar assembly/sort 98.3 3.2E-05 7E-10 86.5 17.3 187 284-551 39-233 (846)
308 KOG1920 IkappaB kinase complex 98.2 0.00022 4.8E-09 83.4 24.2 282 236-594 69-364 (1265)
309 PF07433 DUF1513: Protein of u 98.2 0.00084 1.8E-08 69.2 25.6 228 288-585 8-276 (305)
310 KOG0882 Cyclophilin-related pe 98.2 9.6E-06 2.1E-10 84.7 11.0 205 386-598 7-234 (558)
311 KOG2695 WD40 repeat protein [G 98.2 4.8E-06 1.1E-10 84.2 8.4 147 445-598 228-379 (425)
312 PF00400 WD40: WD domain, G-be 98.1 6.7E-06 1.4E-10 57.7 5.3 37 379-415 2-39 (39)
313 PRK11138 outer membrane biogen 98.0 0.0025 5.4E-08 70.4 27.3 275 296-598 69-356 (394)
314 KOG1920 IkappaB kinase complex 98.0 0.00052 1.1E-08 80.4 21.8 200 388-598 68-325 (1265)
315 PF13360 PQQ_2: PQQ-like domai 98.0 0.001 2.2E-08 67.6 21.9 183 408-598 2-194 (238)
316 KOG1645 RING-finger-containing 98.0 0.00031 6.7E-09 72.9 17.3 81 381-461 186-268 (463)
317 KOG1275 PAB-dependent poly(A) 98.0 9.9E-05 2.1E-09 83.5 14.6 181 246-498 146-340 (1118)
318 KOG3617 WD40 and TPR repeat-co 97.9 0.00044 9.6E-09 77.6 18.4 106 241-417 21-131 (1416)
319 KOG1832 HIV-1 Vpr-binding prot 97.9 5.7E-06 1.2E-10 92.5 3.9 198 379-598 1092-1294(1516)
320 PF06433 Me-amine-dh_H: Methyl 97.9 0.011 2.4E-07 61.8 27.4 272 257-598 17-323 (342)
321 KOG2114 Vacuolar assembly/sort 97.9 0.0017 3.6E-08 73.7 22.7 206 241-505 29-248 (933)
322 KOG1008 Uncharacterized conser 97.9 7.7E-06 1.7E-10 89.0 4.3 190 247-500 70-275 (783)
323 PF08596 Lgl_C: Lethal giant l 97.9 0.006 1.3E-07 66.6 25.8 279 286-594 3-334 (395)
324 KOG2066 Vacuolar assembly/sort 97.9 0.00017 3.7E-09 80.9 13.4 178 427-627 38-226 (846)
325 KOG3617 WD40 and TPR repeat-co 97.8 0.00025 5.5E-09 79.5 14.1 71 238-315 62-132 (1416)
326 cd00216 PQQ_DH Dehydrogenases 97.8 0.013 2.8E-07 66.6 28.6 178 407-599 173-428 (488)
327 PF11768 DUF3312: Protein of u 97.8 0.0014 3.1E-08 71.8 19.3 90 412-503 239-332 (545)
328 PF06977 SdiA-regulated: SdiA- 97.8 0.0045 9.8E-08 62.9 21.9 206 383-592 16-247 (248)
329 KOG3621 WD40 repeat-containing 97.8 0.0019 4.2E-08 71.8 20.4 201 241-508 39-253 (726)
330 PF11768 DUF3312: Protein of u 97.8 0.012 2.6E-07 64.8 26.2 118 471-598 206-332 (545)
331 KOG2114 Vacuolar assembly/sort 97.8 0.0048 1E-07 70.1 23.2 194 395-598 30-246 (933)
332 PF04053 Coatomer_WDAD: Coatom 97.8 0.0048 1E-07 68.3 22.7 182 392-598 72-265 (443)
333 PRK02888 nitrous-oxide reducta 97.8 0.0051 1.1E-07 69.3 22.8 184 396-596 200-405 (635)
334 PF14583 Pectate_lyase22: Olig 97.7 0.0066 1.4E-07 64.6 21.9 308 233-595 33-381 (386)
335 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.074 1.6E-06 57.7 30.6 276 244-539 1-345 (353)
336 KOG1645 RING-finger-containing 97.7 0.0014 3E-08 68.2 15.7 249 230-500 188-461 (463)
337 COG0823 TolB Periplasmic compo 97.6 0.0032 7E-08 69.4 19.2 189 384-586 188-390 (425)
338 PF03178 CPSF_A: CPSF A subuni 97.6 0.033 7.2E-07 59.6 26.3 201 409-622 2-230 (321)
339 KOG1008 Uncharacterized conser 97.6 2.4E-05 5.2E-10 85.3 1.3 199 388-596 56-276 (783)
340 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.11 2.4E-06 51.6 28.3 69 247-324 23-91 (354)
341 PF06433 Me-amine-dh_H: Methyl 97.5 0.033 7.2E-07 58.3 23.9 245 240-559 40-328 (342)
342 PF06977 SdiA-regulated: SdiA- 97.5 0.022 4.9E-07 57.8 21.8 200 279-497 16-247 (248)
343 PF04841 Vps16_N: Vps16, N-ter 97.5 0.023 5.1E-07 62.7 23.8 177 410-598 62-249 (410)
344 PF08596 Lgl_C: Lethal giant l 97.5 0.025 5.4E-07 61.8 23.2 202 390-599 3-294 (395)
345 PF00780 CNH: CNH domain; Int 97.4 0.063 1.4E-06 55.9 25.1 195 391-598 38-258 (275)
346 PF04053 Coatomer_WDAD: Coatom 97.4 0.019 4.2E-07 63.6 21.8 216 238-551 35-262 (443)
347 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.027 5.8E-07 61.2 22.8 201 388-595 42-315 (353)
348 COG3391 Uncharacterized conser 97.3 0.065 1.4E-06 58.7 24.4 200 392-598 77-286 (381)
349 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.057 1.2E-06 53.5 20.2 105 401-507 25-130 (354)
350 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.019 4.1E-07 49.9 15.0 99 391-495 2-109 (111)
351 PF03178 CPSF_A: CPSF A subuni 97.2 0.045 9.6E-07 58.6 21.6 170 409-592 62-262 (321)
352 PF04841 Vps16_N: Vps16, N-ter 97.2 0.27 5.8E-06 54.4 27.6 65 440-507 189-253 (410)
353 KOG3621 WD40 repeat-containing 97.2 0.0022 4.7E-08 71.4 10.8 164 427-597 32-199 (726)
354 COG0823 TolB Periplasmic compo 97.2 0.014 3.1E-07 64.4 17.4 110 393-503 242-361 (425)
355 KOG1897 Damage-specific DNA bi 97.1 0.89 1.9E-05 53.4 32.1 340 241-598 263-616 (1096)
356 PF08553 VID27: VID27 cytoplas 97.1 0.0087 1.9E-07 69.8 15.1 145 440-595 492-647 (794)
357 PRK02888 nitrous-oxide reducta 97.1 0.042 9.1E-07 62.1 19.8 102 397-501 285-405 (635)
358 PF00780 CNH: CNH domain; Int 97.0 0.53 1.1E-05 49.0 27.0 235 244-555 4-259 (275)
359 KOG4640 Anaphase-promoting com 97.0 0.0027 5.8E-08 69.9 9.4 96 427-530 19-115 (665)
360 PF08553 VID27: VID27 cytoplas 97.0 0.017 3.7E-07 67.5 16.3 134 405-549 500-645 (794)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.0 0.65 1.4E-05 53.1 29.0 197 296-505 69-338 (527)
362 smart00320 WD40 WD40 repeats. 97.0 0.0014 3E-08 44.1 4.6 35 278-312 6-40 (40)
363 COG3386 Gluconolactonase [Carb 96.9 0.28 6E-06 51.7 23.5 179 396-585 74-275 (307)
364 cd00216 PQQ_DH Dehydrogenases 96.9 0.26 5.6E-06 56.1 24.7 187 400-598 111-377 (488)
365 COG3490 Uncharacterized protei 96.8 0.13 2.7E-06 51.9 18.4 249 240-498 72-346 (366)
366 COG3386 Gluconolactonase [Carb 96.7 0.68 1.5E-05 48.8 24.0 141 391-542 113-276 (307)
367 PF05096 Glu_cyclase_2: Glutam 96.6 0.95 2.1E-05 46.1 23.9 187 389-584 45-249 (264)
368 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.095 2.1E-06 45.6 14.0 102 431-546 2-109 (111)
369 PF02897 Peptidase_S9_N: Proly 96.6 1.7 3.7E-05 48.2 28.9 206 286-500 125-357 (414)
370 KOG4640 Anaphase-promoting com 96.6 0.0095 2.1E-07 65.7 9.4 91 388-480 20-115 (665)
371 PF05694 SBP56: 56kDa selenium 96.6 1.5 3.3E-05 47.5 26.5 143 409-553 157-344 (461)
372 PF14727 PHTB1_N: PTHB1 N-term 96.5 1.7 3.7E-05 47.7 27.1 188 401-597 147-362 (418)
373 KOG2395 Protein involved in va 96.5 0.03 6.6E-07 60.7 12.5 148 440-595 344-500 (644)
374 COG3391 Uncharacterized conser 96.5 0.49 1.1E-05 51.9 22.6 197 391-598 33-242 (381)
375 PRK13616 lipoprotein LpqB; Pro 96.4 0.16 3.4E-06 58.7 18.6 187 387-587 348-560 (591)
376 PF14583 Pectate_lyase22: Olig 96.4 0.85 1.9E-05 48.9 22.4 181 394-586 86-303 (386)
377 KOG4441 Proteins containing BT 96.4 0.43 9.4E-06 55.1 21.7 195 393-598 327-549 (571)
378 PF02897 Peptidase_S9_N: Proly 96.3 2.4 5.2E-05 47.0 27.7 245 241-506 129-410 (414)
379 smart00320 WD40 WD40 repeats. 96.3 0.0079 1.7E-07 40.2 4.7 36 380-415 4-40 (40)
380 PF05096 Glu_cyclase_2: Glutam 96.2 1.6 3.5E-05 44.4 22.5 189 286-539 46-249 (264)
381 PF05694 SBP56: 56kDa selenium 96.1 2.4 5.2E-05 46.1 24.0 132 407-539 220-391 (461)
382 PHA02713 hypothetical protein; 96.1 0.22 4.8E-06 57.5 17.5 185 401-598 306-536 (557)
383 COG3204 Uncharacterized protei 96.0 1.1 2.5E-05 45.7 19.5 168 385-553 82-265 (316)
384 KOG2444 WD40 repeat protein [G 95.9 0.015 3.2E-07 56.7 5.6 141 443-595 32-177 (238)
385 COG3204 Uncharacterized protei 95.8 1.7 3.7E-05 44.4 19.9 162 280-503 81-266 (316)
386 TIGR03074 PQQ_membr_DH membran 95.7 2.3 5E-05 50.7 24.2 201 399-600 194-482 (764)
387 PF07995 GSDH: Glucose / Sorbo 95.7 3.7 7.9E-05 44.1 25.5 71 520-590 252-330 (331)
388 KOG2395 Protein involved in va 95.6 0.35 7.6E-06 52.8 15.0 137 401-549 348-498 (644)
389 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 2 4.2E-05 49.3 22.3 198 399-600 69-338 (527)
390 PF14655 RAB3GAP2_N: Rab3 GTPa 95.4 4.8 0.0001 44.2 23.3 42 466-507 303-344 (415)
391 KOG4499 Ca2+-binding protein R 95.3 2.4 5.2E-05 41.8 18.1 143 388-540 108-273 (310)
392 PRK13616 lipoprotein LpqB; Pro 95.3 0.42 9.1E-06 55.2 15.6 161 429-595 350-525 (591)
393 PF10647 Gmad1: Lipoprotein Lp 95.0 2 4.3E-05 44.1 18.4 149 390-543 25-187 (253)
394 COG3490 Uncharacterized protei 95.0 0.62 1.3E-05 47.2 13.5 57 241-303 119-180 (366)
395 PF10168 Nup88: Nuclear pore c 94.9 5.9 0.00013 46.9 24.0 33 386-418 144-180 (717)
396 KOG1897 Damage-specific DNA bi 94.9 11 0.00024 44.8 32.7 176 410-598 751-945 (1096)
397 PF15390 DUF4613: Domain of un 94.9 0.72 1.6E-05 51.3 15.0 155 428-595 19-186 (671)
398 KOG3630 Nuclear pore complex, 94.8 0.18 3.8E-06 59.6 10.7 124 472-597 102-230 (1405)
399 PHA03098 kelch-like protein; P 94.8 1.4 3.1E-05 50.7 18.6 185 401-598 297-514 (534)
400 PF12894 Apc4_WD40: Anaphase-p 94.8 0.072 1.6E-06 38.8 4.9 32 285-317 12-43 (47)
401 PF12894 Apc4_WD40: Anaphase-p 94.3 0.15 3.2E-06 37.2 5.7 33 468-500 9-41 (47)
402 TIGR02604 Piru_Ver_Nterm putat 94.2 9.9 0.00021 41.4 22.5 98 390-489 73-202 (367)
403 KOG2079 Vacuolar assembly/sort 94.1 0.25 5.4E-06 58.2 9.8 99 440-544 98-198 (1206)
404 KOG4441 Proteins containing BT 94.0 1.4 3.1E-05 50.8 16.2 185 401-598 287-502 (571)
405 PF14781 BBS2_N: Ciliary BBSom 93.7 3 6.4E-05 37.7 13.9 105 401-506 12-131 (136)
406 COG5276 Uncharacterized conser 93.7 9.3 0.0002 39.2 19.7 162 421-598 79-244 (370)
407 KOG3630 Nuclear pore complex, 93.6 0.29 6.2E-06 58.0 9.3 143 390-538 102-260 (1405)
408 PF10647 Gmad1: Lipoprotein Lp 93.5 3 6.5E-05 42.9 15.9 149 430-587 25-187 (253)
409 PF15390 DUF4613: Domain of un 93.3 1.2 2.6E-05 49.6 12.9 114 386-500 54-186 (671)
410 KOG2079 Vacuolar assembly/sort 93.2 0.6 1.3E-05 55.2 11.0 97 401-500 101-203 (1206)
411 PF14870 PSII_BNR: Photosynthe 93.0 14 0.00029 39.0 21.5 155 427-592 143-301 (302)
412 PHA02790 Kelch-like protein; P 92.9 6.6 0.00014 44.5 18.9 182 401-598 274-473 (480)
413 TIGR03074 PQQ_membr_DH membran 92.6 23 0.0005 42.4 23.4 158 400-559 261-485 (764)
414 TIGR02604 Piru_Ver_Nterm putat 92.5 4.3 9.2E-05 44.3 16.2 151 429-586 14-204 (367)
415 PHA02713 hypothetical protein; 92.5 3.7 8E-05 47.5 16.4 93 410-504 273-379 (557)
416 PF14655 RAB3GAP2_N: Rab3 GTPa 92.5 20 0.00043 39.5 21.3 88 393-480 6-118 (415)
417 PRK10115 protease 2; Provision 92.4 29 0.00062 41.3 29.0 197 392-598 175-397 (686)
418 PF12234 Rav1p_C: RAVE protein 92.3 5.6 0.00012 45.9 17.0 115 472-595 31-156 (631)
419 PF14761 HPS3_N: Hermansky-Pud 92.2 7.7 0.00017 38.2 15.5 146 442-595 29-214 (215)
420 PF08145 BOP1NT: BOP1NT (NUC16 92.1 0.024 5.2E-07 56.7 -1.8 67 151-228 193-259 (260)
421 PF07995 GSDH: Glucose / Sorbo 92.0 20 0.00043 38.4 24.8 73 423-495 247-330 (331)
422 KOG2444 WD40 repeat protein [G 92.0 0.37 8E-06 47.3 6.1 100 401-500 72-177 (238)
423 PF13449 Phytase-like: Esteras 91.9 9.8 0.00021 40.7 17.9 165 428-595 19-249 (326)
424 KOG2377 Uncharacterized conser 91.6 22 0.00047 38.7 19.0 158 241-464 28-190 (657)
425 COG3823 Glutamine cyclotransfe 90.8 9.6 0.00021 37.1 14.1 175 401-583 58-247 (262)
426 KOG4499 Ca2+-binding protein R 90.5 6.1 0.00013 39.1 12.8 218 401-620 29-268 (310)
427 PHA03098 kelch-like protein; P 90.5 14 0.00031 42.4 18.7 103 401-505 345-469 (534)
428 PF10168 Nup88: Nuclear pore c 90.2 9.9 0.00021 45.0 16.9 88 467-554 81-182 (717)
429 COG5167 VID27 Protein involved 90.1 4.7 0.0001 44.2 12.7 145 440-596 478-633 (776)
430 PF10313 DUF2415: Uncharacteri 89.9 1 2.2E-05 31.9 5.1 31 285-315 1-34 (43)
431 COG4257 Vgb Streptogramin lyas 89.3 25 0.00054 35.9 16.2 189 389-598 62-265 (353)
432 PF14870 PSII_BNR: Photosynthe 89.2 32 0.00069 36.2 21.9 191 391-598 64-263 (302)
433 PF08728 CRT10: CRT10; InterP 89.1 8.5 0.00018 44.9 14.8 122 472-594 102-245 (717)
434 KOG1916 Nuclear protein, conta 89.1 0.052 1.1E-06 62.3 -2.7 65 242-314 190-265 (1283)
435 PF14727 PHTB1_N: PTHB1 N-term 88.7 43 0.00093 37.0 27.4 147 353-499 36-203 (418)
436 PLN02153 epithiospecifier prot 88.5 39 0.00084 36.3 20.8 95 410-504 51-171 (341)
437 PLN02193 nitrile-specifier pro 88.5 49 0.0011 37.4 21.5 177 401-586 178-387 (470)
438 KOG1983 Tomosyn and related SN 87.6 19 0.0004 44.6 17.3 78 382-464 192-269 (993)
439 TIGR03118 PEPCTERM_chp_1 conse 87.4 39 0.00086 35.1 19.6 205 390-598 24-282 (336)
440 PF07569 Hira: TUP1-like enhan 87.3 4 8.7E-05 40.8 9.7 71 428-502 12-97 (219)
441 PF08728 CRT10: CRT10; InterP 86.9 26 0.00056 41.1 16.9 98 401-499 116-245 (717)
442 PF12234 Rav1p_C: RAVE protein 86.6 17 0.00036 42.1 15.1 110 431-549 32-154 (631)
443 COG3823 Glutamine cyclotransfe 85.9 25 0.00055 34.4 13.4 129 407-539 109-247 (262)
444 KOG1916 Nuclear protein, conta 85.7 0.42 9.1E-06 55.2 1.9 122 468-595 130-265 (1283)
445 PF07569 Hira: TUP1-like enhan 85.5 3.6 7.9E-05 41.2 8.3 76 241-317 16-98 (219)
446 PF10313 DUF2415: Uncharacteri 85.3 2.5 5.4E-05 30.0 4.9 32 429-460 1-34 (43)
447 PRK10115 protease 2; Provision 85.3 90 0.002 37.2 30.9 68 240-316 131-209 (686)
448 PLN02153 epithiospecifier prot 85.1 58 0.0013 34.9 20.5 101 401-505 88-230 (341)
449 KOG2280 Vacuolar assembly/sort 84.9 39 0.00084 39.3 16.5 193 390-598 45-249 (829)
450 TIGR03548 mutarot_permut cycli 84.9 47 0.001 35.3 17.2 102 401-504 75-198 (323)
451 PF03022 MRJP: Major royal jel 84.9 54 0.0012 34.3 21.5 169 410-583 35-253 (287)
452 KOG4460 Nuclear pore complex, 84.6 11 0.00024 41.5 11.7 86 472-557 105-204 (741)
453 PRK13684 Ycf48-like protein; P 84.2 64 0.0014 34.6 18.9 186 241-498 137-329 (334)
454 PF14781 BBS2_N: Ciliary BBSom 83.6 20 0.00043 32.6 11.0 116 474-597 2-127 (136)
455 PF14761 HPS3_N: Hermansky-Pud 82.4 54 0.0012 32.4 15.7 111 392-504 21-167 (215)
456 PF11635 Med16: Mediator compl 81.7 81 0.0018 38.0 18.9 69 521-590 260-345 (753)
457 TIGR03606 non_repeat_PQQ dehyd 81.5 42 0.00091 37.5 15.1 116 469-586 28-166 (454)
458 PF10214 Rrn6: RNA polymerase 81.3 1.4E+02 0.0029 36.2 25.0 110 389-501 146-277 (765)
459 PHA02790 Kelch-like protein; P 81.2 1E+02 0.0022 34.9 19.7 99 401-504 321-427 (480)
460 PF13449 Phytase-like: Esteras 81.0 82 0.0018 33.6 17.7 148 388-538 19-231 (326)
461 COG5167 VID27 Protein involved 80.9 19 0.00042 39.6 11.7 137 401-549 482-630 (776)
462 PF11635 Med16: Mediator compl 80.6 1.4E+02 0.003 36.0 21.5 68 427-495 258-345 (753)
463 KOG1983 Tomosyn and related SN 80.6 26 0.00057 43.3 14.5 25 574-598 243-267 (993)
464 KOG1898 Splicing factor 3b, su 79.7 1.5E+02 0.0034 36.0 24.4 42 284-325 582-629 (1205)
465 TIGR03547 muta_rot_YjhT mutatr 79.4 94 0.002 33.3 20.2 41 451-491 168-210 (346)
466 PLN00033 photosystem II stabil 78.6 1.1E+02 0.0024 33.7 22.6 153 431-592 241-396 (398)
467 KOG2280 Vacuolar assembly/sort 76.9 93 0.002 36.3 16.0 96 388-489 216-314 (829)
468 KOG2247 WD40 repeat-containing 76.4 0.37 8.1E-06 52.2 -2.5 95 389-486 75-175 (615)
469 PF10214 Rrn6: RNA polymerase 75.4 1.3E+02 0.0028 36.4 18.2 128 468-598 77-235 (765)
470 PF11715 Nup160: Nucleoporin N 74.7 10 0.00022 43.8 8.5 81 245-325 156-259 (547)
471 KOG1900 Nuclear pore complex, 74.6 84 0.0018 39.1 15.7 71 387-460 177-273 (1311)
472 KOG1898 Splicing factor 3b, su 74.5 2.1E+02 0.0046 34.9 19.2 175 410-597 854-1050(1205)
473 COG1520 FOG: WD40-like repeat 74.0 1.4E+02 0.003 32.4 20.4 191 398-599 67-272 (370)
474 PLN00033 photosystem II stabil 73.7 1.5E+02 0.0032 32.7 17.3 146 391-548 241-396 (398)
475 KOG3616 Selective LIM binding 73.1 33 0.00072 39.5 11.1 79 419-500 5-83 (1636)
476 PRK13613 lipoprotein LpqB; Pro 72.5 2E+02 0.0043 33.6 19.2 195 385-589 358-576 (599)
477 PF12657 TFIIIC_delta: Transcr 72.3 29 0.00062 33.3 9.6 30 389-418 86-122 (173)
478 TIGR03606 non_repeat_PQQ dehyd 72.2 74 0.0016 35.6 13.8 55 427-482 28-90 (454)
479 KOG4460 Nuclear pore complex, 72.0 1.7E+02 0.0038 32.8 19.2 33 390-422 167-203 (741)
480 PRK14131 N-acetylneuraminic ac 71.3 1.6E+02 0.0035 32.1 17.9 90 401-491 42-149 (376)
481 PLN02193 nitrile-specifier pro 70.0 2E+02 0.0042 32.5 20.3 101 401-505 231-356 (470)
482 KOG1896 mRNA cleavage and poly 69.8 2.9E+02 0.0062 34.4 18.7 220 361-589 1001-1269(1366)
483 KOG1900 Nuclear pore complex, 69.8 35 0.00077 42.1 11.2 147 448-596 96-273 (1311)
484 COG4590 ABC-type uncharacteriz 68.7 28 0.00061 37.9 9.0 165 427-601 219-392 (733)
485 KOG2377 Uncharacterized conser 68.3 80 0.0017 34.6 12.3 114 387-503 65-188 (657)
486 PRK14131 N-acetylneuraminic ac 68.3 1.8E+02 0.004 31.6 19.5 41 410-450 107-149 (376)
487 KOG2247 WD40 repeat-containing 68.0 0.81 1.8E-05 49.7 -2.3 143 389-543 35-180 (615)
488 PF11715 Nup160: Nucleoporin N 67.5 17 0.00037 42.0 8.2 68 532-599 157-252 (547)
489 PF12657 TFIIIC_delta: Transcr 66.8 28 0.0006 33.4 8.2 30 286-315 87-122 (173)
490 PF05935 Arylsulfotrans: Aryls 64.5 2.5E+02 0.0055 31.8 18.7 120 434-558 153-308 (477)
491 TIGR03118 PEPCTERM_chp_1 conse 64.5 1.9E+02 0.0041 30.3 23.4 82 447-530 218-307 (336)
492 PF02333 Phytase: Phytase; In 63.9 2.2E+02 0.0049 31.0 19.3 161 437-598 65-240 (381)
493 PF12768 Rax2: Cortical protei 63.8 1.6E+02 0.0035 30.7 13.5 97 451-552 16-124 (281)
494 PF12768 Rax2: Cortical protei 63.2 2E+02 0.0042 30.0 17.3 93 409-502 16-125 (281)
495 PF08801 Nucleoporin_N: Nup133 63.0 1.2E+02 0.0025 33.8 13.4 30 567-596 191-220 (422)
496 smart00036 CNH Domain found in 61.8 2.1E+02 0.0046 30.1 24.5 203 387-598 41-273 (302)
497 TIGR03547 muta_rot_YjhT mutatr 61.5 2.3E+02 0.005 30.3 18.2 52 440-491 63-128 (346)
498 COG1520 FOG: WD40-like repeat 60.5 2.5E+02 0.0054 30.4 24.3 183 399-598 111-308 (370)
499 PF10433 MMS1_N: Mono-function 59.2 3.2E+02 0.0068 31.1 32.4 148 440-595 221-388 (504)
500 PRK13615 lipoprotein LpqB; Pro 58.7 3.4E+02 0.0073 31.3 19.2 70 389-459 417-502 (557)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-82 Score=692.03 Aligned_cols=674 Identities=43% Similarity=0.724 Sum_probs=498.5
Q ss_pred CCCCCcccccccccccccccccCCCCCCCCCCCCCCcccccccccccCCccccccCCCCcHHHHHHHHHHHhCccccccc
Q 004410 1 MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSL 80 (755)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (755)
|.-..+ |||++|||+.|+|++ . |++|+..|.||.|||+|||++|||+....+
T Consensus 1 ~~~~~~-ee~~~f~~~~~~~~~-------------------------~--~~~w~~~p~sv~err~~~l~~mgls~~~~~ 52 (712)
T KOG0283|consen 1 MGAPGE-EEEDRFFDASERVSP-------------------------D--YDLWTSSPGSVSERRRKFLNGMGLSSKKTL 52 (712)
T ss_pred CCCccc-cccccccccccccCc-------------------------c--hhhhhcCccchhHHHHHHhhhhcccccccc
Confidence 444444 555999999999981 0 999999999999999999999998766444
Q ss_pred ccccCCCcccccccccccccccccccceeccCCCCCCcccccccccccCCCCccccccccccCCcceeeeeCCCCceEEE
Q 004410 81 MNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVV 160 (755)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~g~~~~~ 160 (755)
++.+............++ ..+.-.+-++..++ ++.-++.++-. . ......+.. +|.|.+++|
T Consensus 53 ~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~-~~~~~~~~s~~-~------~~~~~~~~~--~~~~~e~~v 114 (712)
T KOG0283|consen 53 SRSETVDRLSSSSVESNV--------DESNHNSVEDTDSE-QCRPSSSSSKS-R------VSQSSSSIE--LDTGDEFSV 114 (712)
T ss_pred cccccccccccccccccc--------cccccccccccccc-cCCcccccccc-c------cccccccee--ecccceeeE
Confidence 433221111111111111 00000011111111 11100000000 0 001111111 689999999
Q ss_pred ccCCCchhhhhhcccccCCCccccccccccCCCCCCccccCCCCcCcch-----------hhhh--hhhhhhhccccccc
Q 004410 161 SDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEE-----------SRDL--VDAKRKVKRGWLKK 227 (755)
Q Consensus 161 ~~~~~~~~~~~~~lr~v~~~~~~~~e~f~~~~~~sp~~~~~l~r~~~~~-----------~~~~--~~~~k~~~~~w~~~ 227 (755)
++...++++++ +.++++..++++++|+.+.+.++. +.++++++..+ .... ....++....|++.
T Consensus 115 ~e~~~~~~~~~--~sd~~~~~~~~~e~~e~~~g~~~~-v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l~~ 191 (712)
T KOG0283|consen 115 SENPEDGSVNR--LSDVGTGASSTLEELESSPGESSR-VKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWLKS 191 (712)
T ss_pred eeccCcccccc--ccCCCcccccccccccCCcCcccc-hhhhhhhcccccchhhcccccccccccccchhhhhhhhhhhh
Confidence 99999999998 999999999999999999998888 89988866553 1111 11234444559998
Q ss_pred ccceeeeeccCcc---eeecCCCCe-----e--EEeeCC--------CeEEEEECCCCcccccccccceeee-cccccEE
Q 004410 228 LGAMARIIDRHGS---ATLKPGDHE-----L--TLGQRM--------RRVRVHPVKKQSRELSSLYTGQEFL-AHEGSIL 288 (755)
Q Consensus 228 ~~~~~~~~~~~~~---~~~spdg~~-----l--asgs~d--------g~V~Vw~~~~~~~~~~~~~~~~~l~-~H~~~V~ 288 (755)
++.+....+.... -.+..+..- + .++..+ ..+++-...+..+++.+++..|++. +|+++|+
T Consensus 192 ~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw 271 (712)
T KOG0283|consen 192 LKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGAIW 271 (712)
T ss_pred ccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccccccCCcEE
Confidence 8877665443211 111111111 0 111111 5788889999999999999999999 9999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecC-cceeeeeeeeecCCceEE
Q 004410 289 TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-EKIDKTKSLRKSSDLTCV 367 (755)
Q Consensus 289 ~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 367 (755)
+|+||+||+|||+||+||.|+||.+...+. .........++.+.......+....... ................++
T Consensus 272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~ 348 (712)
T KOG0283|consen 272 AMKFSHDGKYLASAGEDGVIRVWKVIESER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCV 348 (712)
T ss_pred EEEeCCCCceeeecCCCceEEEEEEeccch---hcccccccchhhhhhhhccccCccccccccccccccccccccCCccc
Confidence 999999999999999999999999987554 2333344455555555544444444443 222334444555556668
Q ss_pred EeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEE
Q 004410 368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG 447 (755)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sg 447 (755)
.++.+.+.+.++|++.+.||.+.|++|.|+.+++|+++++|+|||||++...+|+++|.|.+.||||+|+|.|++||++|
T Consensus 349 ~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 349 LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred cCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 448 SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 448 s~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
+.||+||||++...+++.|.+.+..|+++||.|||++.++|+.+|.|++|++...+++....+.+...++...++||+++
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q 508 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ 508 (712)
T ss_pred ccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888887777999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEEC--CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC--cccCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCG--ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD--KSSSR 603 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~--~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~--~~~~~ 603 (755)
|.|.+...|+++++|..|||+|+ ..+..++++ .........+.|+.||++|+++++|..||||++.... .....
T Consensus 509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG--~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~~~~~~~ 586 (712)
T KOG0283|consen 509 FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG--FRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFNSEASHKK 586 (712)
T ss_pred ecCCCCCeEEEecCCCceEEEeccchhhhhhhcc--cccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCcccccccc
Confidence 99988889999999999999999 667788887 7777888999999999999999999999999997665 23456
Q ss_pred CccccceeeeecCCeEEEEcCCCCCcCCCCCCCCCCCccccccccccCCCCCcCCCcCCCCCCCCCCCccCCcccccccC
Q 004410 604 SKSIWSCESFLSHNVSVAIPWVGLETTAGALPSPTFGEKMQRNSLKQNNHQNLEGDLDQNMPHSPSDCFSHARDFFLEYM 683 (755)
Q Consensus 604 ~~~~~~~~~f~~~~~~va~~w~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (755)
.+.++++++|.+..++++++|+|..........|...... . +...+ .. .+....+ ..
T Consensus 587 ~~~~~s~e~f~s~~vs~a~~w~g~~~~n~ss~~p~~~~~~---~------~~~~~----------~~-~s~~~~~---~~ 643 (712)
T KOG0283|consen 587 TKSIRSYEHFSSVDVSVAIPWPGFHAHNPSSNLPPLIKAA---L------RPVNE----------FK-LSSPMRS---LN 643 (712)
T ss_pred ccccccccccccccccccccccccccccccccCCCCcccc---c------Ccccc----------cc-cCCcccc---cc
Confidence 6678899999999999999999986544211111111000 0 00000 00 0000001 12
Q ss_pred CCCccCCCCCCCCCCCCCcccCCccchhhhhhhhhhccccC-CCCCCCceEEEecCCCCEEeeeeccCccccC
Q 004410 684 TKSAATWPEEKLPNASPKAVSLSPLCKSKLKLLKSACQSIL-SNPHLWGLVVVTASWDGRIRTYLNYGLPIRI 755 (755)
Q Consensus 684 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~i~t~~~dg~ir~~~n~~~~~~~ 755 (755)
.++++|||||+|..... + +...+..++++...|+... ..+++||+|||||+|||.||+|||||||+++
T Consensus 644 ~~~s~t~~e~~~~~s~~--~--~~~~~~~~~~~~S~~~~~~~~~~~~wg~vivTs~~~g~Ir~~~n~glp~~~ 712 (712)
T KOG0283|consen 644 SRGSATWPEEKLLDSPG--A--SASSRSSIKFLMSGCQRSSSSSPHAWGMVIVTSTLDGQIRCFQNYGLPRRV 712 (712)
T ss_pred ccccccCcccccccccC--c--ccccccccccccCCCccccccccCCCcceeeeccccceEEEEEecCCCCCC
Confidence 38999999999876421 1 2233455577777777653 3478999999999999999999999999985
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-43 Score=349.10 Aligned_cols=336 Identities=19% Similarity=0.311 Sum_probs=289.2
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~ 304 (755)
.+.-.++.+|...|-+++|+|+|..||+|+.|.++|+||..+.. +..+.++|...|.|++|+|||+.||+|+.
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------p~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------PLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-------cceeecCCccEEEEEEECCCcchhhcccc
Confidence 34456788999999999999999999999999999999976543 34568999999999999999999999999
Q ss_pred CCcEEEEEccCCeee-eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 305 DGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
||.|++||..+++.+ ..+..+...+.+++|.+.+...- .......+.|+.+.+|+... ++.+..
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~-----------~r~las~skDg~vrIWd~~~----~~~~~~ 242 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPP-----------CRRLASSSKDGSVRIWDTKL----GTCVRT 242 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCCC-----------ccceecccCCCCEEEEEccC----ceEEEE
Confidence 999999999988765 45677777788888877654321 12445677889999998775 345788
Q ss_pred ecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEe-----------eC------------
Q 004410 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN-----------PV------------ 439 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fs-----------p~------------ 439 (755)
+.||+..|+|+.|--+|+|++++.|++|++|+...|.+.+.+. |...|+.|+.+ |.
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 9999999999999999999999999999999999999999884 99999999887 20
Q ss_pred ------------CCCEEEEEeCCCcEEEEEcCCCe-EE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 440 ------------DDNYFISGSIDGKVRIWEVRRCQ-VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 440 ------------d~~~l~sgs~Dg~V~iwdl~~~~-~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
.+..|++|+.|.++.+|+....+ .+ ...+|...|..+.|+||+++||+++.|..|++||.++|+.+
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l 402 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL 402 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh
Confidence 23359999999999999976543 44 68899999999999999999999999999999999999976
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
.. ...|-..|+.++|+. |.++|++|+.|.+++||+..+.+..+.. .+|...|.++.|+|||..+++|+.
T Consensus 403 as--------fRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DL--pGh~DEVf~vDwspDG~rV~sggk 471 (480)
T KOG0271|consen 403 AS--------FRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDL--PGHADEVFAVDWSPDGQRVASGGK 471 (480)
T ss_pred hh--------hhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccC--CCCCceEEEEEecCCCceeecCCC
Confidence 54 344678999999999 9999999999999999999886555554 889999999999999999999999
Q ss_pred CCcEEEEE
Q 004410 586 DSNIYIWN 593 (755)
Q Consensus 586 Dg~I~iWd 593 (755)
|..+++|.
T Consensus 472 dkv~~lw~ 479 (480)
T KOG0271|consen 472 DKVLRLWR 479 (480)
T ss_pred ceEEEeec
Confidence 99999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-40 Score=336.66 Aligned_cols=278 Identities=22% Similarity=0.375 Sum_probs=251.2
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC--CCEEEEEcCCCcEEEEEc
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd--g~~LaSgs~Dg~I~vWdv 313 (755)
..+..+.|++|++.||||+.+|.++||..... ...++|.+|...|.++.|+|. +..||||+.||+|++|++
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCc-------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 44666999999999999999999999996543 355789999999999999996 678999999999999998
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.+. .++..+.+|...|..
T Consensus 249 ~~e--------------------------------------------------------------~~l~~l~gH~~RVs~ 266 (459)
T KOG0272|consen 249 SQE--------------------------------------------------------------TPLQDLEGHLARVSR 266 (459)
T ss_pred CCC--------------------------------------------------------------cchhhhhcchhhhee
Confidence 653 346778899999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCC
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIR 470 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~ 470 (755)
++|+|+| +|+|++.|.+-++||+.++..+... +|...|.+++|+| ||.++++|+.|..-||||++++.++ .+.+|.
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~ 345 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI 345 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccc
Confidence 9999999 9999999999999999998876655 5999999999999 9999999999999999999999877 788899
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
..|.+|.|+|+|..||+|+.|++++|||++....+.. ...|..-|+.+.|.|..+.+|++++.|++++||..
T Consensus 346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~--------ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT--------IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred cceeeEeECCCceEEeecCCCCcEEEeeeccccccee--------cccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 9999999999999999999999999999998877543 45678899999999988999999999999999998
Q ss_pred CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 551 ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 551 ~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
.+....... .+|.+.|.++.+++|+++|+|++.|.+|++|.
T Consensus 418 ~~~~~~ksL--aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RTWSPLKSL--AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCcccchhh--cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 876554444 78999999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=291.74 Aligned_cols=293 Identities=19% Similarity=0.310 Sum_probs=256.1
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
+++++|...|.++.|++|.+++++++.||.+.|||.-+..++ +.+.--...|..++|+|.|+++|.|+-|+..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-------haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-------HAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-------eEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 678999999999999999999999999999999997655443 2244456789999999999999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.||++.+.+.-.. .+...++.+|.
T Consensus 122 siy~ls~~d~~g~--------------------------------------------------------~~v~r~l~gHt 145 (343)
T KOG0286|consen 122 SIYPLSTRDAEGN--------------------------------------------------------VRVSRELAGHT 145 (343)
T ss_pred EEEeccccccccc--------------------------------------------------------ceeeeeecCcc
Confidence 9999875421000 01245678999
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Ee
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~ 466 (755)
+.+.++.|-+|++|++++.|.+..+||+++++.+..| +|.+.|.++.+.|.+++.|++|+-|+..+|||++.+.++ .+
T Consensus 146 gylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF 225 (343)
T KOG0286|consen 146 GYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF 225 (343)
T ss_pred ceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence 9999999999889999999999999999999999999 499999999999989999999999999999999999888 58
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
.+|...|.+++|.|+|.-|++|+.|+++++||++..+.+..+. .......|++++|+. .+++|++|..|.++.
T Consensus 226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys------~~~~~~gitSv~FS~-SGRlLfagy~d~~c~ 298 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS------HDSIICGITSVAFSK-SGRLLFAGYDDFTCN 298 (343)
T ss_pred cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec------cCcccCCceeEEEcc-cccEEEeeecCCcee
Confidence 8999999999999999999999999999999999887665433 233456899999999 899999999999999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+||.-.... ...+.+|...|.++..+|||.-|+||+.|..|+||.
T Consensus 299 vWDtlk~e~--vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 299 VWDTLKGER--VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred Eeeccccce--EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999765443 444489999999999999999999999999999994
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.4e-37 Score=304.19 Aligned_cols=312 Identities=20% Similarity=0.279 Sum_probs=262.8
Q ss_pred CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEe
Q 004410 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335 (755)
Q Consensus 256 dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~ 335 (755)
+....||.-..-.+.-....+...+.||.++|.|++|+|+|..||||+.|.++|+||+.+.....+.+.+..-+.|+.|.
T Consensus 87 ~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvaws 166 (480)
T KOG0271|consen 87 DVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWS 166 (480)
T ss_pred heeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEEC
Confidence 44455555443333333344567789999999999999999999999999999999999999999999999989999988
Q ss_pred eCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC-----C-eEEEEeCCC
Q 004410 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN-----G-FLLSSSADK 409 (755)
Q Consensus 336 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-----~-~L~s~s~Dg 409 (755)
|++. .+..++.++.+.+|+++.....+ ..+.+|...|++|+|.|- . +|++++.||
T Consensus 167 PDgk----------------~iASG~~dg~I~lwdpktg~~~g---~~l~gH~K~It~Lawep~hl~p~~r~las~skDg 227 (480)
T KOG0271|consen 167 PDGK----------------KIASGSKDGSIRLWDPKTGQQIG---RALRGHKKWITALAWEPLHLVPPCRRLASSSKDG 227 (480)
T ss_pred CCcc----------------hhhccccCCeEEEecCCCCCccc---ccccCcccceeEEeecccccCCCccceecccCCC
Confidence 8863 34567889999999998766544 457899999999999872 2 899999999
Q ss_pred cEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEc--------
Q 004410 410 TVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYC-------- 479 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~s-------- 479 (755)
.|+|||+..++++..+ +|+..|+|+.|- ...++++|+.|++|++|+...+.+. .+.+|...|+.++.+
T Consensus 228 ~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtg 305 (480)
T KOG0271|consen 228 SVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTG 305 (480)
T ss_pred CEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcc
Confidence 9999999999999888 599999999996 4789999999999999999998877 578899999988776
Q ss_pred ---cCCC-------------------------eEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 480 ---PDGK-------------------------GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 480 ---pdg~-------------------------~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
|.++ .|++|+.|+++.+|+....+.. ..+...|..-|+.+.|+|
T Consensus 306 af~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp-------i~rmtgHq~lVn~V~fSP- 377 (480)
T KOG0271|consen 306 AFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP-------ITRMTGHQALVNHVSFSP- 377 (480)
T ss_pred ccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc-------hhhhhchhhheeeEEECC-
Confidence 3333 4999999999999997654421 123456788999999999
Q ss_pred CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 532 DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|+++|++++.|..|++|++.+......+ .+|-+.|+.++|+.|.++|++|+.|.++++|++.+.+
T Consensus 378 d~r~IASaSFDkSVkLW~g~tGk~lasf--RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 378 DGRYIASASFDKSVKLWDGRTGKFLASF--RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred CccEEEEeecccceeeeeCCCcchhhhh--hhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 9999999999999999999986544443 7799999999999999999999999999999998765
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.1e-36 Score=282.93 Aligned_cols=282 Identities=20% Similarity=0.357 Sum_probs=245.4
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCC
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~ 327 (755)
-+|++++.|.+||+|+..++. +.++++..++.|+.+...||+++||+|+. ..||+||+.++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~-------C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n---------- 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI-------CSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN---------- 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCe-------EEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC----------
Confidence 378999999999999966543 55677777889999999999999999986 579999998764
Q ss_pred CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe
Q 004410 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (755)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s 406 (755)
..|+.++.+|...|+.+.|..+| .+++|+
T Consensus 73 --------------------------------------------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs 102 (311)
T KOG0315|consen 73 --------------------------------------------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGS 102 (311)
T ss_pred --------------------------------------------------CCceeEEeccCCceEEEEEeecCeEEEecC
Confidence 23678899999999999999999 999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE--eccCCcceEEEEEccCCCe
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKG 484 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~--~~~~~~~V~~v~~spdg~~ 484 (755)
.||+++|||++.-.+.+.+.|..+|+++..+| +...|++|..+|.|++||+....+.. .......|.++...|||+.
T Consensus 103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred CCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 99999999999999999999999999999999 88999999999999999999876552 3344578999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeecc
Q 004410 485 GIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRV 564 (755)
Q Consensus 485 la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 564 (755)
++.+...|++++|++.+......+ ....+.+.|...|..+.++| +.++|++++.|.+++||+..+. .+......+|
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~s~l--~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~-~kle~~l~gh 257 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTASEL--EPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF-FKLELVLTGH 257 (311)
T ss_pred EEEecCCccEEEEEccCCCccccc--eEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc-eeeEEEeecC
Confidence 999999999999999875443322 23334677899999999999 9999999999999999999887 4444455788
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcccC
Q 004410 565 AGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSS 602 (755)
Q Consensus 565 ~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~~~ 602 (755)
...+..++||.||+||+||+.|+.+++|++..+++...
T Consensus 258 ~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 258 QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred CceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 99999999999999999999999999999999984443
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-36 Score=287.62 Aligned_cols=294 Identities=21% Similarity=0.349 Sum_probs=245.2
Q ss_pred cccceeeeeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
...++.+|.+.|..++..+.+. .+++++.|..+.+|++..... ......+.+.||...|..+..++||++.++++.|
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~--~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI--KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc--ccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 3457888999999999988854 788899999999999886633 2334567799999999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+++++||+.+++. .+.|.
T Consensus 85 ~~lrlWDl~~g~~--------------------------------------------------------------t~~f~ 102 (315)
T KOG0279|consen 85 GTLRLWDLATGES--------------------------------------------------------------TRRFV 102 (315)
T ss_pred ceEEEEEecCCcE--------------------------------------------------------------EEEEE
Confidence 9999999988753 45678
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCC-CCEEEEEeCCCcEEEEEcCCC
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d-~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
||...|++++|++|+ .+++|+.|++|++|++.......... +.+.|+|+.|+|.. ..+|++++.|++|++||+++.
T Consensus 103 GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~ 182 (315)
T KOG0279|consen 103 GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC 182 (315)
T ss_pred ecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc
Confidence 999999999999999 99999999999999987665555444 47999999999943 678999999999999999999
Q ss_pred eEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 462 QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 462 ~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
++. .+.+|.+.++.++++|||...++|+.||.+.+||++.++.++. ..+...|.+++|+| +..+|+.+.
T Consensus 183 ~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys---------l~a~~~v~sl~fsp-nrywL~~at 252 (315)
T KOG0279|consen 183 QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS---------LEAFDIVNSLCFSP-NRYWLCAAT 252 (315)
T ss_pred chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe---------ccCCCeEeeEEecC-CceeEeecc
Confidence 887 5888999999999999999999999999999999999887653 23567899999999 666666555
Q ss_pred CCCcEEEEECCcceeeEEEe--eecc-----CCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 541 ADSLVRVLCGENVVGKFKAS--AFRV-----AGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~--~~~~-----~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
. ..|+|||........... ..+. .....+++|++||..|++|-.|+.|++|.+.
T Consensus 253 ~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 253 A-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred C-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 4 459999987643322211 1111 3345789999999999999999999999875
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-35 Score=296.44 Aligned_cols=264 Identities=23% Similarity=0.326 Sum_probs=231.7
Q ss_pred cccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
|-+.+|..+.|++|++.||||+.+|.++||+..+...
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~------------------------------------------- 209 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL------------------------------------------- 209 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce-------------------------------------------
Confidence 4567899999999999999999999999999866532
Q ss_pred CCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEe
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fs 437 (755)
+++|.||...|.++.|+|. + .|++++.||+|++|++.+...+..+ +|...|..++|+
T Consensus 210 -------------------~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafH 270 (459)
T KOG0272|consen 210 -------------------LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFH 270 (459)
T ss_pred -------------------eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeec
Confidence 5678999999999999997 4 9999999999999999998888888 599999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc
Q 004410 438 PVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 438 p~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
| +|++|++++.|.+-++||+.++..+ ...+|...|.+++|+|||..+++|+.|..-+|||+++++.+.. +
T Consensus 271 P-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~----L---- 341 (459)
T KOG0272|consen 271 P-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF----L---- 341 (459)
T ss_pred C-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE----e----
Confidence 9 9999999999999999999998766 6789999999999999999999999999999999999998764 2
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec-CCCEEEEEeCCCcEEEEEcC
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS-DGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-dg~~L~sgs~Dg~I~iWd~~ 595 (755)
..|.+.|.+|.|+| ++..|++|+.|++++|||++.....+.. ..|..-|+.++|+| .|.+|+|++.|++++||...
T Consensus 342 ~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~i--pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 342 AGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTI--PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred cccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceec--ccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 23778999999999 9999999999999999999887766665 78999999999998 78999999999999999998
Q ss_pred CCCcccCCCccccceeeeecCCeEEEEcCCC
Q 004410 596 NQDKSSSRSKSIWSCESFLSHNVSVAIPWVG 626 (755)
Q Consensus 596 ~~~~~~~~~~~~~~~~~f~~~~~~va~~w~g 626 (755)
+..+... .........++.++.++
T Consensus 419 ~~~~~ks-------LaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 419 TWSPLKS-------LAGHEGKVISLDISPDS 442 (459)
T ss_pred Ccccchh-------hcCCccceEEEEeccCC
Confidence 8774433 22333344555665554
No 9
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.2e-34 Score=275.25 Aligned_cols=299 Identities=22% Similarity=0.323 Sum_probs=256.9
Q ss_pred cccccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEE
Q 004410 223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG 302 (755)
Q Consensus 223 ~w~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSg 302 (755)
....++-.+.+|...+..+.|+|+|..||+|+.|..|.+|+.....+.+. .+.+|.++|..+.|.+|++.|+++
T Consensus 35 ~l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~------~lkgHsgAVM~l~~~~d~s~i~S~ 108 (338)
T KOG0265|consen 35 SLQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW------VLKGHSGAVMELHGMRDGSHILSC 108 (338)
T ss_pred cccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee------eeccccceeEeeeeccCCCEEEEe
Confidence 34445566778888999999999999999999999999999665443333 367999999999999999999999
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
+.|.+|+.||+++|++. .
T Consensus 109 gtDk~v~~wD~~tG~~~--------------------------------------------------------------r 126 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRI--------------------------------------------------------------R 126 (338)
T ss_pred cCCceEEEEecccceee--------------------------------------------------------------e
Confidence 99999999999998754 3
Q ss_pred EecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.+++|..-|..+.-+.-| ++.+++.|++++|||+++..+++++.....++++.|.. .+..+++|+.|+.|++||++.
T Consensus 127 k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 127 KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeeccccCceeeecccc
Confidence 456788888888865556 77789999999999999999999999899999999998 899999999999999999998
Q ss_pred CeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 461 CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 461 ~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.... .+.+|.+.|+.+..+|+|.++.+-+.|.++++||++-....+....-++++..........++|+| ++..+.+|
T Consensus 206 ~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ag 284 (338)
T KOG0265|consen 206 NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAG 284 (338)
T ss_pred CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccc
Confidence 8777 688999999999999999999999999999999998654433322224444444456677899999 99999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+.|..+++||.......++. .+|.+.|..+.|+|...+|.+++.|.+|++=.
T Consensus 285 s~dr~vyvwd~~~r~~lykl--pGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 285 SADRFVYVWDTTSRRILYKL--PGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccceEEEeecccccEEEEc--CCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999999998876666666 89999999999999999999999999998743
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-32 Score=281.82 Aligned_cols=336 Identities=20% Similarity=0.232 Sum_probs=265.4
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
+...|..-|.++.|+|||..+|+.+.||+|.+||-+++.+.-. + ..-.+|++.|.+|.|+||++.|+|++.|.+++
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~-l---~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE-L---EDSDAHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE-e---cCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence 4566777889999999999999999999999999877654221 1 11248999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
|||+.+.+++.++.....- ..+.+.+.+.+ ..++..+..+.+..+++... .++..+.||..
T Consensus 261 IWdVs~~slv~t~~~~~~v----------~dqqvG~lWqk-----d~lItVSl~G~in~ln~~d~----~~~~~i~GHnK 321 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGSTV----------EDQQVGCLWQK-----DHLITVSLSGTINYLNPSDP----SVLKVISGHNK 321 (603)
T ss_pred EEEeeccceEEEeecCCch----------hceEEEEEEeC-----CeEEEEEcCcEEEEecccCC----Chhheeccccc
Confidence 9999999988887654430 11222222221 12233444555555555442 36888999999
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ---- 462 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~---- 462 (755)
.|++|..++++ +|++|+.||.|.-|+..++..-+.. .|...|.+++-+. ...+++.+.|.+|++.++....
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~~~~~t~~ 399 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE--SGELFTIGWDDTLRVISLKDNGYTKS 399 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC--CCcEEEEecCCeEEEEecccCccccc
Confidence 99999999999 9999999999999999999888775 4999999999764 4668888899999999774211
Q ss_pred ----------------------------EEEec--------cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 463 ----------------------------VVDYT--------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 463 ----------------------------~~~~~--------~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
++-+. ...-...+++++|+++.+++|+.||.|+||.+....+..
T Consensus 400 ~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e 479 (603)
T KOG0318|consen 400 EVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE 479 (603)
T ss_pred ceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc
Confidence 00011 122346789999999999999999999999999877643
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
+. ....|...|++++++| ++.+|+++...+.+.+||..+........ .-|...|.+++|+|+.+++|||+.|
T Consensus 480 e~------~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w-~FHtakI~~~aWsP~n~~vATGSlD 551 (603)
T KOG0318|consen 480 EA------KLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRW-AFHTAKINCVAWSPNNKLVATGSLD 551 (603)
T ss_pred ee------eeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceeccee-eeeeeeEEEEEeCCCceEEEecccc
Confidence 32 2345778999999999 99999999999999999998866544332 3488999999999999999999999
Q ss_pred CcEEEEEcCCCC
Q 004410 587 SNIYIWNYSNQD 598 (755)
Q Consensus 587 g~I~iWd~~~~~ 598 (755)
-+|.||+++.+.
T Consensus 552 t~Viiysv~kP~ 563 (603)
T KOG0318|consen 552 TNVIIYSVKKPA 563 (603)
T ss_pred ceEEEEEccChh
Confidence 999999998776
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.6e-35 Score=292.88 Aligned_cols=280 Identities=21% Similarity=0.350 Sum_probs=240.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
|..+.|.|+|+.|++|+..|.+.+|+... +.....+++|+.+|.+|.|+++|.+++||..+|.|++|+..-..
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~-------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTS-------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCce-------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 44589999999999999999999999532 22223478999999999999999999999999999999864321
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC-CCCEEEEEE
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDLSW 396 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~l~~ 396 (755)
+..+..| ...|.+++|
T Consensus 172 ---------------------------------------------------------------Vk~~~ahh~eaIRdlaf 188 (464)
T KOG0284|consen 172 ---------------------------------------------------------------VKIIQAHHAEAIRDLAF 188 (464)
T ss_pred ---------------------------------------------------------------hHHhhHhhhhhhheecc
Confidence 2223444 489999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcce
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIV 473 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V 473 (755)
+|+. .+++++.||+|+|||....+....+ +|.-.|.+++|+| ...++++|+.|..|++||.+++.++ .+..|+..|
T Consensus 189 SpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntV 267 (464)
T KOG0284|consen 189 SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTV 267 (464)
T ss_pred CCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceE
Confidence 9987 9999999999999999888777776 5999999999999 8899999999999999999999988 788899999
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 474 SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
..+.|+|++++|++++.|..|++||+++.+.+.. ...|.+.++++.|+|-...++.+|+.||.|..|.....
T Consensus 268 l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~--------~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~ 339 (464)
T KOG0284|consen 268 LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT--------YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE 339 (464)
T ss_pred EEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH--------hhcchhhheeeccccccccceeeccCCCceEEEecccc
Confidence 9999999999999999999999999996554432 34577899999999999999999999999999997732
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
... ......|...|++++|+|=|.+|++|+.|.++++|.-...
T Consensus 340 ~p~-~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 340 EPL-GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred ccc-cCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 222 2223679999999999999999999999999999986543
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.1e-32 Score=289.35 Aligned_cols=351 Identities=22% Similarity=0.345 Sum_probs=268.5
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcc-cccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~-~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
+..+.++.|||+|+++|.|.. ..+.||...+..+ ++.++...+++.+|...|.++.|+.|.++|++|+.|.+++||.+
T Consensus 96 k~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred cCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 456888999999999998866 4799999876655 67788888999999999999999999999999999999999999
Q ss_pred cCCee--eeeeecCCCCCceeEEeeCCC--------CceeEEeec-------------------------Ccc-----ee
Q 004410 314 IEHER--LDGFDVQDTDPSCLYFTINHL--------SQLIPIDVD-------------------------KEK-----ID 353 (755)
Q Consensus 314 ~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~-------------------------~~~-----~~ 353 (755)
...+. ...+..+...+....|..+.. ..+..+.++ ..+ ..
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 87665 333444444444433332221 122222222 000 00
Q ss_pred ee---eeeeecCCceEEEeCC-----------cce---------------------------------------------
Q 004410 354 KT---KSLRKSSDLTCVVLPP-----------KVF--------------------------------------------- 374 (755)
Q Consensus 354 ~~---~~~~~~~~~~~~~~~~-----------~~~--------------------------------------------- 374 (755)
+. .....+....+..+++ ..+
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlV 334 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLV 334 (893)
T ss_pred EEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEE
Confidence 00 0000001111111110 000
Q ss_pred -ec-cCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 375 -RL-LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 375 -~~-~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
.. .+..+...++|...+.+++|+||| ++++|+.||.|+|||..++-|+.+|. |+..|+.++|+. .++.+++.+.|
T Consensus 335 weWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLD 413 (893)
T KOG0291|consen 335 WEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLD 413 (893)
T ss_pred EEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecC
Confidence 00 122344568999999999999999 99999999999999999999999995 999999999999 99999999999
Q ss_pred CcEEEEEcCCCeEEEeccCC--cceEEEEEccCCCeEEEEeCCCc-EEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 451 GKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGKGGIVGTMTGN-CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~~~--~~V~~v~~spdg~~la~gs~dg~-I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
|+||.||+...+........ ....+++..|.|..+++|+.|.- |++|++.+|+++.. ...|.++|.+++
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi--------LsGHEgPVs~l~ 485 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI--------LSGHEGPVSGLS 485 (893)
T ss_pred CeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh--------hcCCCCcceeeE
Confidence 99999999988777544444 34678888888999999998864 99999999998753 456889999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|+| .+..|++++.|.+|++||+-........ ..+...++.++|.|||+.|+++.-||.|.+||...+.
T Consensus 486 f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEt--l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 486 FSP-DGSLLASGSWDKTVRIWDIFSSSGTVET--LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred Ecc-ccCeEEeccccceEEEEEeeccCceeee--EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 999 8899999999999999998775555544 5677789999999999999999999999999987654
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-33 Score=305.29 Aligned_cols=250 Identities=29% Similarity=0.457 Sum_probs=220.1
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCc-------cccc-----------------ccccceeeecccccEEEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS-------RELS-----------------SLYTGQEFLAHEGSILTM 290 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~-------~~~~-----------------~~~~~~~l~~H~~~V~~l 290 (755)
...+.|+.|++|+++||.|..|..|++|.+.... ..+. .-...+++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 3457889999999999999999999999987321 1111 112235688999999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeC
Q 004410 291 KFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370 (755)
Q Consensus 291 ~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (755)
.|+|+.++|+++++|++||+|.+.+..+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~---------------------------------------------------- 485 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSC---------------------------------------------------- 485 (707)
T ss_pred eecccccceeeccCCcceeeeeccccee----------------------------------------------------
Confidence 9999999999999999999999987653
Q ss_pred CcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEe
Q 004410 371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS 448 (755)
Q Consensus 371 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs 448 (755)
+..+.||..+|+++.|+|.| ++||++.|++.++|.....++++.| .|...|.|+.|+| +.+|+++||
T Consensus 486 ----------~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGS 554 (707)
T KOG0263|consen 486 ----------LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGS 554 (707)
T ss_pred ----------EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCC
Confidence 23457999999999999999 9999999999999999999999999 4999999999999 999999999
Q ss_pred CCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 449 IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
.|.+||+||+.++..+ .+.+|..+|++++|+|+|++|++|+.||.|.+||+.++.++.. ...|.+.|+++.
T Consensus 555 sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~--------l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 555 SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ--------LKGHTGTIYSLS 626 (707)
T ss_pred CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh--------hhcccCceeEEE
Confidence 9999999999999888 5789999999999999999999999999999999999987754 334678999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceee
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGK 556 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~ 556 (755)
|+. ++..|++++.|++|++||.......
T Consensus 627 FS~-dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 627 FSR-DGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred Eec-CCCEEEecCCCCeEEEEEchhhccc
Confidence 999 9999999999999999997764433
No 14
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.8e-34 Score=293.91 Aligned_cols=253 Identities=23% Similarity=0.453 Sum_probs=218.4
Q ss_pred ccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 275 YTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 275 ~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
.....+.||+..|.++.|.| .+.+|++++.|+.|+||++....
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~------------------------------------ 248 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR------------------------------------ 248 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc------------------------------------
Confidence 34567899999999999999 89999999999999999986521
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEE
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVT 432 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~ 432 (755)
..++++.+|..+|.+++|+++| .+++++.|++|++||+++|+++..+.....++
T Consensus 249 -------------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~ 303 (503)
T KOG0282|consen 249 -------------------------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT 303 (503)
T ss_pred -------------------------ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce
Confidence 2367789999999999999999 99999999999999999999999999999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
|+.|+|.+.+.|++|+.|++|+.||++++++++ +..|-..|..+.|-++|+++++.+.|++++||+.+..-.+..
T Consensus 304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~---- 379 (503)
T KOG0282|consen 304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKN---- 379 (503)
T ss_pred eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchh----
Confidence 999999555999999999999999999999885 556778999999999999999999999999999988765432
Q ss_pred ecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc-----eeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 512 LQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV-----VGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 512 ~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~-----~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
..........++..+| ++.+++.-+.|+.|.++.+... ...+.+ ....+.-..+.|||||.+|++|+.|
T Consensus 380 ---i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG--h~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 380 ---IADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG--HSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred ---hcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcc--eeccCceeeEEEcCCCCeEEeecCC
Confidence 1223445677899999 8999999999999999986542 233333 3345667889999999999999999
Q ss_pred CcEEEEEcCCCC
Q 004410 587 SNIYIWNYSNQD 598 (755)
Q Consensus 587 g~I~iWd~~~~~ 598 (755)
|.+++||.++-+
T Consensus 454 G~v~~wdwkt~k 465 (503)
T KOG0282|consen 454 GKVNFWDWKTTK 465 (503)
T ss_pred ccEEEeechhhh
Confidence 999999987654
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=262.63 Aligned_cols=291 Identities=19% Similarity=0.330 Sum_probs=238.2
Q ss_pred cccccceeeeeccCcceeecCC-CCeeEEeeCCCeEEEEECCCCcccccccccceee-ecccccEEEEEEecCCCEEEEE
Q 004410 225 LKKLGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASG 302 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~fspdg~~LaSg 302 (755)
+..++.+.+|.+++..++|+|. |.+||+++.|..|+||+... .. .+.+...+ .+|+..|..++|+|.|+|||+|
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~---s~~ck~vld~~hkrsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GD---SWTCKTVLDDGHKRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CC---cEEEEEeccccchheeeeeeecCCCcEEEEe
Confidence 3455678888999999999999 99999999999999999874 11 12222222 3799999999999999999999
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
+.|.++.||.-..++. +.+.
T Consensus 80 SFD~t~~Iw~k~~~ef------------------------------------------------------------ecv~ 99 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEF------------------------------------------------------------ECVA 99 (312)
T ss_pred eccceEEEeecCCCce------------------------------------------------------------eEEe
Confidence 9999999997544321 2256
Q ss_pred EecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---eEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~---~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
++.||...|.+++|+++| +|++++.|+.|-||.+..+ .|+.+++ |...|..+.|+| ...+|+++++|++|++|+
T Consensus 100 ~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~ 178 (312)
T KOG0645|consen 100 TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYR 178 (312)
T ss_pred eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEe
Confidence 788999999999999999 9999999999999998744 5666664 999999999999 999999999999999998
Q ss_pred cCCC---eEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 458 VRRC---QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 458 l~~~---~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
-... .++ ++.+|...|.+++|++.|..|++++.|++++||-..+.- ...|...++.+.|. .
T Consensus 179 ~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------~~~~sr~~Y~v~W~---~ 243 (312)
T KOG0645|consen 179 DEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------SGMHSRALYDVPWD---N 243 (312)
T ss_pred ecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------chhcccceEeeeec---c
Confidence 7732 334 677888899999999999999999999999999866321 23356789999997 4
Q ss_pred CEEEEEECCCcEEEEECCcce--eeE---EEeeeccCCceEEEEEecC-CCEEEEEeCCCcEEEEEcC
Q 004410 534 SKVIVTSADSLVRVLCGENVV--GKF---KASAFRVAGSQMFATFTSD-GKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~--~~~---~~~~~~~~~~v~~l~fspd-g~~L~sgs~Dg~I~iWd~~ 595 (755)
..|++++.|+.|+++...... ..+ ......|...|+++.|.|. ..+|++|+.||.|++|.+.
T Consensus 244 ~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 244 GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 789999999999999855421 111 1112457789999999995 7789999999999999875
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-32 Score=260.41 Aligned_cols=277 Identities=21% Similarity=0.318 Sum_probs=229.3
Q ss_pred eeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 278 QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.++.+|++.|+.++..+. .+.|++++.|.++.+|++.....
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-------------------------------------- 50 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-------------------------------------- 50 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc--------------------------------------
Confidence 468899999999999886 57899999999999999865421
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSV 434 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i 434 (755)
..+.++..+.||...|.++..++++ +.++++.|+++++||+.+++..+.| +|...|.++
T Consensus 51 -------------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsv 111 (315)
T KOG0279|consen 51 -------------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSV 111 (315)
T ss_pred -------------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEE
Confidence 1145678899999999999999999 9999999999999999999888888 699999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccC--CcceEEEEEccC--CCeEEEEeCCCcEEEEECCCCeEeeeeeE
Q 004410 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI--REIVSAVCYCPD--GKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~--~~~V~~v~~spd--g~~la~gs~dg~I~iwD~~~~~~~~~~~~ 510 (755)
+|+| +.+.+++|+.|.+|++|++........... .+.|+|++|+|+ ..+|+.++.|++|++||+++.++...
T Consensus 112 a~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~--- 187 (315)
T KOG0279|consen 112 AFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT--- 187 (315)
T ss_pred EecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc---
Confidence 9999 999999999999999999998877765544 789999999997 78999999999999999999887653
Q ss_pred EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEE
Q 004410 511 CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590 (755)
Q Consensus 511 ~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~ 590 (755)
...|.+.++.++++| |+.+.++|+.||.+.+||+...+..+. ..+...|.+++|+|+. |.+++..+..|+
T Consensus 188 -----~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lys---l~a~~~v~sl~fspnr-ywL~~at~~sIk 257 (315)
T KOG0279|consen 188 -----FIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYS---LEAFDIVNSLCFSPNR-YWLCAATATSIK 257 (315)
T ss_pred -----cccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEe---ccCCCeEeeEEecCCc-eeEeeccCCceE
Confidence 344788999999999 999999999999999999998777544 5688899999999985 445555566799
Q ss_pred EEEcCCCCcccCCCccccceeeeecCCeEEEEcCC
Q 004410 591 IWNYSNQDKSSSRSKSIWSCESFLSHNVSVAIPWV 625 (755)
Q Consensus 591 iWd~~~~~~~~~~~~~~~~~~~f~~~~~~va~~w~ 625 (755)
|||+.++...............-...+.++..+|+
T Consensus 258 Iwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws 292 (315)
T KOG0279|consen 258 IWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS 292 (315)
T ss_pred EEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence 99999987443322222222112223455666665
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-31 Score=285.66 Aligned_cols=283 Identities=24% Similarity=0.380 Sum_probs=240.4
Q ss_pred ccCcceeecCCCCeeEEeeC-CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 236 DRHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~-dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
..+..++|+..|.+||.|+. -|.+.||++......+. .++|...|.+++++|||+++|||++||.|+|||..
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK-------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK-------QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-------ccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 45667999999999999875 58999999876544332 57999999999999999999999999999999998
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
++-+ +.+|..|++.|+.+
T Consensus 381 SgfC--------------------------------------------------------------~vTFteHts~Vt~v 398 (893)
T KOG0291|consen 381 SGFC--------------------------------------------------------------FVTFTEHTSGVTAV 398 (893)
T ss_pred CceE--------------------------------------------------------------EEEeccCCCceEEE
Confidence 7754 45677899999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecC--CcEEEEEEeeCCCCEEEEEeCCC-cEEEEEcCCCeEEE-eccC
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQVVD-YTDI 469 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~--~~V~~i~fsp~d~~~l~sgs~Dg-~V~iwdl~~~~~~~-~~~~ 469 (755)
+|+..+ .+++++.||+|+.||+...++.++|... -...|++..| .|.+++.|+.|. .|.||++++|+++. +.+|
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH 477 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGH 477 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCC
Confidence 999999 9999999999999999999999999744 4467888888 899999999887 59999999999994 7899
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE-eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~-~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
.++|.+++|+|+|..|++|+.|.+|++||+-...- ..++. ..+.++.+.|.| ++..|++++-||.|.+|
T Consensus 478 EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~---------i~sdvl~vsfrP-dG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 478 EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE---------IRSDVLAVSFRP-DGKELAVATLDGQITFF 547 (893)
T ss_pred CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe---------eccceeEEEEcC-CCCeEEEEEecceEEEE
Confidence 99999999999999999999999999999875422 22211 346899999999 99999999999999999
Q ss_pred ECCcceeeEE------------------EeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 549 CGENVVGKFK------------------ASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 549 d~~~~~~~~~------------------~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|.....+... ..........+.+++++||.+|++|+....|+||++.++-
T Consensus 548 d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 548 DIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred EhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 9776543311 1111233578999999999999999999999999999876
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-32 Score=268.57 Aligned_cols=285 Identities=19% Similarity=0.322 Sum_probs=254.5
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+.+|...+..+.|+|+-.++++++.|++|++||+.++.. ...++||.+.|..|+|+..|++||+++.|=.++
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-------e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-------ERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------hhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 3556777788899999999999999999999999876553 345899999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+||..+.. ..+..+.+|..
T Consensus 176 LWd~~~~~-------------------------------------------------------------~c~ks~~gh~h 194 (406)
T KOG0295|consen 176 LWDFDTFF-------------------------------------------------------------RCIKSLIGHEH 194 (406)
T ss_pred heeHHHHH-------------------------------------------------------------HHHHHhcCccc
Confidence 99986531 12445678999
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Ee
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~ 466 (755)
.|.+++|-|.| ++++++.|.+|+.|++.++.|+++|. |...|..++.+. |+.++++++.|.+|++|-+.++++. .+
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~l 273 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAEL 273 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhh
Confidence 99999999999 99999999999999999999999995 999999999998 9999999999999999999999776 57
Q ss_pred ccCCcceEEEEEccC---------------CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 467 TDIREIVSAVCYCPD---------------GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 467 ~~~~~~V~~v~~spd---------------g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
..|..+|.+++|.|. ++++.+++.|++|++||+.++.++.+ ...|...|.+++|+|
T Consensus 274 R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t--------L~ghdnwVr~~af~p- 344 (406)
T KOG0295|consen 274 REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT--------LVGHDNWVRGVAFSP- 344 (406)
T ss_pred hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE--------EecccceeeeeEEcC-
Confidence 789999999999873 25899999999999999999998865 334788999999999
Q ss_pred CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 532 DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.|++|+++..|+++++||+.+..+.... ..|..-++++.|+.+-.|++||+-|..+++|.-
T Consensus 345 ~Gkyi~ScaDDktlrvwdl~~~~cmk~~--~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 345 GGKYILSCADDKTLRVWDLKNLQCMKTL--EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCeEEEEEecCCcEEEEEeccceeeecc--CCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999998777766 578889999999999999999999999999964
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.9e-31 Score=263.13 Aligned_cols=330 Identities=17% Similarity=0.184 Sum_probs=273.7
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~ 304 (755)
...+.++..|.+.+.+++++|+.+++|||+.|..-.||+...+.. .-++.+|++.|+++.|+.||.|||||+.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-------~~eltgHKDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-------AGELTGHKDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-------eeEecCCCCceEEEEEccCceEEEecCC
Confidence 345567888999999999999999999999999999999877652 2357899999999999999999999999
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
+|.|+||+..++.....+........-+.|.+.. ..++.++.++.+.+|..... .....+
T Consensus 127 sG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a----------------~illAG~~DGsvWmw~ip~~----~~~kv~ 186 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA----------------HILLAGSTDGSVWMWQIPSQ----ALCKVM 186 (399)
T ss_pred CccEEEEEcccCceEEEeecccCceEEEEecccc----------------cEEEeecCCCcEEEEECCCc----ceeeEe
Confidence 9999999999998777765333333333333321 23456777888887765432 446778
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
.||..++++=.|.|+| +++++..||+|++||+.+++++..+. .....+++.++. .+..++.|+.++.+++-+..++
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCccEEEEccccc
Confidence 9999999999999999 99999999999999999999998885 455678999988 8999999999999999999999
Q ss_pred eEEEecc---------CCcc---eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 462 QVVDYTD---------IREI---VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 462 ~~~~~~~---------~~~~---V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
+++.... +... |..+.++..-.+.|+|+.||+|.|||+...++.. .-.|...|+.+.|.
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~---------~c~he~~V~~l~w~ 336 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH---------ICEHEDGVTKLKWL 336 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe---------eccCCCceEEEEEc
Confidence 9885333 2233 4444555566788999999999999999877654 22356779999998
Q ss_pred CCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
+ ..+|++++.+|.|+.||.++...++.. .+|...|.+++++|+.++++|+|.|+..+||++.
T Consensus 337 ~--t~~l~t~c~~g~v~~wDaRtG~l~~~y--~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 337 N--TDYLLTACANGKVRQWDARTGQLKFTY--TGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred C--cchheeeccCceEEeeeccccceEEEE--ecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 7 578999999999999999998888777 8999999999999999999999999999999875
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7e-32 Score=267.00 Aligned_cols=297 Identities=19% Similarity=0.336 Sum_probs=252.9
Q ss_pred hccccccc---ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC
Q 004410 220 VKRGWLKK---LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG 296 (755)
Q Consensus 220 ~~~~w~~~---~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg 296 (755)
.++.|..+ .+.+.+|.+.|.++++.|.+.++++|+.|++|+|||+.++... .++.||-..|..+++|+--
T Consensus 133 ~rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk-------ltltGhi~~vr~vavS~rH 205 (460)
T KOG0285|consen 133 PRPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK-------LTLTGHIETVRGVAVSKRH 205 (460)
T ss_pred CCccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE-------EeecchhheeeeeeecccC
Confidence 45667554 4568899999999999999999999999999999998765533 3588999999999999999
Q ss_pred CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec
Q 004410 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (755)
Q Consensus 297 ~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (755)
.||++++.|+.|+.||++..+.
T Consensus 206 pYlFs~gedk~VKCwDLe~nkv---------------------------------------------------------- 227 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKV---------------------------------------------------------- 227 (460)
T ss_pred ceEEEecCCCeeEEEechhhhh----------------------------------------------------------
Confidence 9999999999999999977653
Q ss_pred cCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 377 ~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
+..+.||.+.|.+|+.+|.- .|++++.|.++||||+++...+.++. |...|..+.+.| .+..+++|+.|++|+
T Consensus 228 ----IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 228 ----IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVR 302 (460)
T ss_pred ----HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceEE
Confidence 45667999999999999987 99999999999999999999999985 999999999999 677899999999999
Q ss_pred EEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 455 iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
+||++.++.. .+..|+..|.+++.+|....+|+++.| .|+-|++..+..... ...|...|+.+..+. .
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n--------lsgh~~iintl~~ns--D 371 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN--------LSGHNAIINTLSVNS--D 371 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc--------cccccceeeeeeecc--C
Confidence 9999988766 788899999999999999999998866 689999998876543 334667888888874 4
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEe------eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKAS------AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~------~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
..+++|+..|.+.+||..+...-.... .......|.+.+|...|..|++|..|.+|++|.-+..
T Consensus 372 ~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 372 GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 789999999999999987643322221 1123457899999999999999999999999986543
No 21
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-31 Score=283.45 Aligned_cols=359 Identities=21% Similarity=0.323 Sum_probs=267.6
Q ss_pred eeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCC--EEEEEcCCCcEEEE
Q 004410 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTVRVW 311 (755)
Q Consensus 234 ~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~--~LaSgs~Dg~I~vW 311 (755)
|..++-.++|+|.+.+||+|+.|++|+|||+.. .++.+.|+||.+.|.++.|+|+-. .|++|..|++|++|
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~-------~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vw 176 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKN-------GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVW 176 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeC-------CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEE
Confidence 455666699999999999999999999999654 456778999999999999999754 58999999999999
Q ss_pred EccCCee-eeeeecCCCCCceeEEeeCCCCce--------eEEeecC--------------------c--ceeeeeeeee
Q 004410 312 KVIEHER-LDGFDVQDTDPSCLYFTINHLSQL--------IPIDVDK--------------------E--KIDKTKSLRK 360 (755)
Q Consensus 312 dv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~--------------------~--~~~~~~~~~~ 360 (755)
|+.+... +..+..+...+..+.+..+....+ ..++... . .......++.
T Consensus 177 nl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 177 NLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred EcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 9985543 444444544444444444322111 1110000 0 0001122222
Q ss_pred cCCceEEEeCCc--------------------------------------------------------------------
Q 004410 361 SSDLTCVVLPPK-------------------------------------------------------------------- 372 (755)
Q Consensus 361 ~~~~~~~~~~~~-------------------------------------------------------------------- 372 (755)
+.++....|+..
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 222222222211
Q ss_pred -------------ceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-----ecCCcEEE
Q 004410 373 -------------VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-----SHNNYVTS 433 (755)
Q Consensus 373 -------------~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-----~h~~~V~~ 433 (755)
.+.........+.||...|.++....+| .|++++.|+++++|.++.+...... .|...|.+
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 0111111123467999999999966677 9999999999999988544433222 49999999
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEEcCCCeE----E------EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCe
Q 004410 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQV----V------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~----~------~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~ 503 (755)
++++.....+|+++|.|+++++|+++..+. + ....|...|++++++|+.++||+|+.|.+.+||++..+.
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~ 496 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR 496 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce
Confidence 999886778999999999999999987221 1 234688899999999999999999999999999999666
Q ss_pred EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE
Q 004410 504 LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
+... ...|...|.++.|+| ..+.++++|.|.+|+||.+.+..+.-.. .+|...|..+.|-.+|+.|+++
T Consensus 497 l~~v--------LsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~--eGH~~aVlra~F~~~~~qliS~ 565 (775)
T KOG0319|consen 497 LLGV--------LSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTF--EGHTSAVLRASFIRNGKQLISA 565 (775)
T ss_pred EEEE--------eeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeee--cCccceeEeeeeeeCCcEEEec
Confidence 5542 445778999999999 8899999999999999999987777666 7899999999999999999999
Q ss_pred eCCCcEEEEEcCCCCccc---CCCccccce
Q 004410 584 SEDSNIYIWNYSNQDKSS---SRSKSIWSC 610 (755)
Q Consensus 584 s~Dg~I~iWd~~~~~~~~---~~~~~~~~~ 610 (755)
+.||-|+||++++.+.+. .+...+|..
T Consensus 566 ~adGliKlWnikt~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 566 GADGLIKLWNIKTNECEMTLDAHNDRVWAL 595 (775)
T ss_pred cCCCcEEEEeccchhhhhhhhhccceeEEE
Confidence 999999999999998544 345566654
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-31 Score=274.35 Aligned_cols=290 Identities=20% Similarity=0.309 Sum_probs=243.7
Q ss_pred eeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccc-cccce--eeec----ccccEEEEEEecCCCEEEEEcCC
Q 004410 234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSS-LYTGQ--EFLA----HEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 234 ~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~-~~~~~--~l~~----H~~~V~~l~fspdg~~LaSgs~D 305 (755)
|...|.+.+|+|-.. +|++|+.+-..++|++......... +...+ .+-+ ....|++++|+.+|.+||+|+.|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 677788899999988 9999999999999997641111111 00000 0111 23579999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.++||+.... .+.++.
T Consensus 257 G~~riw~~~G~---------------------------------------------------------------l~~tl~ 273 (524)
T KOG0273|consen 257 GEARIWNKDGN---------------------------------------------------------------LISTLG 273 (524)
T ss_pred cEEEEEecCch---------------------------------------------------------------hhhhhh
Confidence 99999996432 244567
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
.|.++|.+|.|+..| +|++++.|+++.+||..++.....|. |..+-..+.|- +..-|++++.|+.|+|+-+.....
T Consensus 274 ~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P 351 (524)
T KOG0273|consen 274 QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRP 351 (524)
T ss_pred ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCc
Confidence 799999999999999 99999999999999999999999987 66665788886 577899999999999999987665
Q ss_pred E-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC--------CCC
Q 004410 464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS--------DPS 534 (755)
Q Consensus 464 ~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~--------d~~ 534 (755)
+ ++.+|++.|.++.|+|.|.+|++++.|++++||.+........ ...|...|+.+.|+|. .+.
T Consensus 352 ~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~--------l~~Hskei~t~~wsp~g~v~~n~~~~~ 423 (524)
T KOG0273|consen 352 VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHD--------LQAHSKEIYTIKWSPTGPVTSNPNMNL 423 (524)
T ss_pred ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhh--------hhhhccceeeEeecCCCCccCCCcCCc
Confidence 5 7888999999999999999999999999999999877655432 3457788999999885 346
Q ss_pred EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 535 KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 535 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+++++.|++|++||.....+.+.. ..|..+|++++|+|+|+||++|+.||.|.||++.+++
T Consensus 424 ~l~sas~dstV~lwdv~~gv~i~~f--~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 424 MLASASFDSTVKLWDVESGVPIHTL--MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred eEEEeecCCeEEEEEccCCceeEee--ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 8999999999999999998888876 7899999999999999999999999999999999887
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.4e-30 Score=268.82 Aligned_cols=284 Identities=27% Similarity=0.465 Sum_probs=241.7
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
+.+.+|.+.+.+++|+|++++|++++.+|.|++|+..... ....+.+|...|..+.|+|++++|++++.||.|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence 4566788899999999999999999999999999987543 234567899999999999999999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
++|++.+++. +..+..|.
T Consensus 76 ~i~~~~~~~~--------------------------------------------------------------~~~~~~~~ 93 (289)
T cd00200 76 RLWDLETGEC--------------------------------------------------------------VRTLTGHT 93 (289)
T ss_pred EEEEcCcccc--------------------------------------------------------------eEEEeccC
Confidence 9999876432 23445688
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-E
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~ 465 (755)
..|.++.|++++ .+++++.|+.|++||+.+++....+. |...|.+++|+| ++.++++++.|+.|++||+++++.+ .
T Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~ 172 (289)
T cd00200 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVAT 172 (289)
T ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEcccccccee
Confidence 899999999998 77777779999999999888888886 888999999999 7888888888999999999977665 4
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
+..+...+.+++|+|+++.+++++.+|.|++||+..++..... ..+...+.++.|+| ++.++++++.|+.|
T Consensus 173 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~--------~~~~~~i~~~~~~~-~~~~~~~~~~~~~i 243 (289)
T cd00200 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL--------RGHENGVNSVAFSP-DGYLLASGSEDGTI 243 (289)
T ss_pred EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch--------hhcCCceEEEEEcC-CCcEEEEEcCCCcE
Confidence 5567779999999999999999999999999999987665432 23556899999999 67888888889999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
++|+.......... ..|...+.+++|++++++|++++.||.|++|+
T Consensus 244 ~i~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 244 RVWDLRTGECVQTL--SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCceeEEEc--cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99998865444443 46778999999999999999999999999996
No 24
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-32 Score=271.94 Aligned_cols=299 Identities=17% Similarity=0.237 Sum_probs=250.2
Q ss_pred ccccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 224 WLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 224 w~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
..+..+.+..|.+.|..+.||++|++||+++.|.+..||++..... +...+++.+|..+|..+.||||.+||++|+
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 3445567788999999999999999999999999999999764433 456678999999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|..+++||+.+|.....+.
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~------------------------------------------------------------ 308 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYP------------------------------------------------------------ 308 (519)
T ss_pred chHheeeccCCcchhhhhcc------------------------------------------------------------
Confidence 99999999999987543322
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.+|...+.+++|.||| .+++|+.|++|..||+.... +..+. ....|.+++..+ ||.++++.+.|..|++++..+
T Consensus 309 -~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 309 -SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred -cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhh
Confidence 2345778999999999 99999999999999987554 33332 346699999999 999999999999999999998
Q ss_pred CeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
...+.......+|++++.+.||+++++.-.+..+++||+..++++.... |++ .+.-|..-+|.-.+..++++|+
T Consensus 386 ~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~----Ghk--q~~fiIrSCFgg~~~~fiaSGS 459 (519)
T KOG0293|consen 386 RVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF----GHK--QGHFIIRSCFGGGNDKFIASGS 459 (519)
T ss_pred hhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh----ccc--ccceEEEeccCCCCcceEEecC
Confidence 7777677778899999999999999999999999999999887765432 222 2345666677766778999999
Q ss_pred CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC-CEEEEEeCCCcEEEEEcCCC
Q 004410 541 ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG-KHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd~~~~ 597 (755)
.|+.|+||+.......... .+|...|++++|+|.. .++|+||+||+|+||.....
T Consensus 460 ED~kvyIWhr~sgkll~~L--sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 460 EDSKVYIWHRISGKLLAVL--SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCceEEEEEccCCceeEee--cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999998876655555 8999999999999965 56899999999999987644
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9e-31 Score=267.94 Aligned_cols=277 Identities=20% Similarity=0.346 Sum_probs=242.1
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
..+++++|+.+|..||+|..+|.++||+..... ..+|..|+++|.+++|+.+|.||++++.|+++.+||..+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l--------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL--------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh--------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 457889999999999999999999999965432 235677999999999999999999999999999999988
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
+..... +.-|..+-.++.
T Consensus 308 g~~~q~--------------------------------------------------------------f~~~s~~~lDVd 325 (524)
T KOG0273|consen 308 GTVKQQ--------------------------------------------------------------FEFHSAPALDVD 325 (524)
T ss_pred ceEEEe--------------------------------------------------------------eeeccCCccceE
Confidence 875433 334666667899
Q ss_pred EcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcce
Q 004410 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIV 473 (755)
Q Consensus 396 ~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V 473 (755)
|-.+..+++++.|+.|+|+.+....++.++ .|.+.|.+|.|+| .+.+|++++.|++++||.+...... .+..|...|
T Consensus 326 W~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei 404 (524)
T KOG0273|consen 326 WQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI 404 (524)
T ss_pred EecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccce
Confidence 998889999999999999999999999888 5999999999999 9999999999999999998776666 688899999
Q ss_pred EEEEEccCC---------CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 474 SAVCYCPDG---------KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 474 ~~v~~spdg---------~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
..+.|+|+| ..+++++.|++|++||+..+..+.. ...|..+|++++|+| +++++++|+.||.
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~--------f~kH~~pVysvafS~-~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT--------LMKHQEPVYSVAFSP-NGRYLASGSLDGC 475 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe--------eccCCCceEEEEecC-CCcEEEecCCCCe
Confidence 999999965 4689999999999999999988764 224788999999999 9999999999999
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
|.+|+..+...... ....+.|..++|+.+|.+|..+-.|+.+.+-|+.
T Consensus 476 V~iws~~~~~l~~s---~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKS---YQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeccccchheeEe---ecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999887543332 4456779999999999999999999999999875
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-30 Score=251.37 Aligned_cols=270 Identities=19% Similarity=0.311 Sum_probs=226.6
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
++|+||.+.|.+|.|++|.++|++++.||.+.|||..+....+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h------------------------------------- 91 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH------------------------------------- 91 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee-------------------------------------
Confidence 5689999999999999999999999999999999987665332
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC------eEEEEE-ecCC
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID------RCLRVF-SHNN 429 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~------~~~~~~-~h~~ 429 (755)
.+.-....|..++|+|++ ++++|+.|+...||++.+. +..+.+ .|.+
T Consensus 92 -------------------------aipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg 146 (343)
T KOG0286|consen 92 -------------------------AIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG 146 (343)
T ss_pred -------------------------EEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc
Confidence 223356789999999999 9999999999999999855 233344 5999
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
++.|+.|.+ +..|++++.|.+..+||+++++.+ .+.+|.+.|.++.++| +++.+++|+-|+..++||++.+...+.
T Consensus 147 ylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt 224 (343)
T KOG0286|consen 147 YLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT 224 (343)
T ss_pred eeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEe
Confidence 999999975 678999999999999999999887 6889999999999999 999999999999999999999988775
Q ss_pred eeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 508 NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
...|...|+.+.|.| ++.-+++|+.|++.++||++...............+|++++||..|++|++|..|.
T Consensus 225 --------F~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 225 --------FEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred --------ecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence 334788999999999 99999999999999999998755555544355667899999999999999999999
Q ss_pred cEEEEEcCCCCcccCCCccc--cceeeeecCCeEE
Q 004410 588 NIYIWNYSNQDKSSSRSKSI--WSCESFLSHNVSV 620 (755)
Q Consensus 588 ~I~iWd~~~~~~~~~~~~~~--~~~~~f~~~~~~v 620 (755)
++.+||.-.++......... .+|......+.++
T Consensus 296 ~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av 330 (343)
T KOG0286|consen 296 TCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAV 330 (343)
T ss_pred ceeEeeccccceEEEeeccCCeeEEEEECCCCcEE
Confidence 99999998887433222221 2555555555555
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.7e-31 Score=293.58 Aligned_cols=293 Identities=23% Similarity=0.372 Sum_probs=244.0
Q ss_pred ccceeee-eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 228 LGAMARI-IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 228 ~~~~~~~-~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
...+..+ ...+.++.|+|+|+++++++.++.+++|+...... ...+++.+|...|.+++|+||+++|++++.|+
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDK 225 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCc
Confidence 3444443 45577799999999999999999999999844332 23355689999999999999999999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+|+|||+.... ..+.++.+
T Consensus 226 tiriwd~~~~~-------------------------------------------------------------~~~~~l~g 244 (456)
T KOG0266|consen 226 TLRIWDLKDDG-------------------------------------------------------------RNLKTLKG 244 (456)
T ss_pred eEEEeeccCCC-------------------------------------------------------------eEEEEecC
Confidence 99999983331 12567789
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe--
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-- 462 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-- 462 (755)
|...|++++|+|++ .+++|+.|++|+|||+++++++..+. |...|++++|++ ++++|++++.|+.|+|||+.++.
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee
Confidence 99999999999999 99999999999999999999999995 999999999999 99999999999999999999998
Q ss_pred EE-EeccCCc--ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 463 VV-DYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 463 ~~-~~~~~~~--~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
++ ....+.. .++.++|+|++++|++++.|+.+++||+..+........+... ...+.....++ ++.+++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~i~sg 397 (456)
T KOG0266|consen 324 CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL-----VRCIFSPTLST-GGKLIYSG 397 (456)
T ss_pred eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc-----ceeEecccccC-CCCeEEEE
Confidence 33 3444433 5899999999999999999999999999988876543321111 12444555566 89999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeecc-CCceEEEEEecCCCEEEEEe--CCCcEEEEEcC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRV-AGSQMFATFTSDGKHVVSPS--EDSNIYIWNYS 595 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~v~~l~fspdg~~L~sgs--~Dg~I~iWd~~ 595 (755)
+.|+.|.+|+..+....... .+| ...+..+.+++...++++++ .|+.|++|..+
T Consensus 398 ~~d~~v~~~~~~s~~~~~~l--~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 398 SEDGSVYVWDSSSGGILQRL--EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eCCceEEEEeCCccchhhhh--cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999885555444 567 88899999999999999998 78999999864
No 28
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.9e-30 Score=264.50 Aligned_cols=363 Identities=19% Similarity=0.287 Sum_probs=273.2
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC--CcE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--GTV 308 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D--g~I 308 (755)
+..|...++-+.++|.|.++|+|...|+||||+.......+. .+++.-.++|..|+|+.|++.|+..++. +..
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK-----nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK-----NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee-----eeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 444555556688999999999999999999999765443333 4567778999999999999999887753 334
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
+++-+.+|..+.++..+......+.|.+.. .+....++.|..+.++.-..|+. ..++..|.
T Consensus 130 ~~F~~DSG~SvGei~GhSr~ins~~~KpsR---------------PfRi~T~sdDn~v~ffeGPPFKF----k~s~r~Hs 190 (603)
T KOG0318|consen 130 HVFLWDSGNSVGEITGHSRRINSVDFKPSR---------------PFRIATGSDDNTVAFFEGPPFKF----KSSFREHS 190 (603)
T ss_pred EEEEecCCCccceeeccceeEeeeeccCCC---------------ceEEEeccCCCeEEEeeCCCeee----eecccccc
Confidence 444445677677777665555555444433 23445667777777776554433 34667899
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
.-|.|+.|+||| ++++++.||+|.+||-.+++.+..+. |.+.|.++.|+| |...|++++.|.+++|||+.+.++
T Consensus 191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccce
Confidence 999999999999 99999999999999999999999985 999999999999 999999999999999999976432
Q ss_pred E--------------------------------------------EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEEC
Q 004410 464 V--------------------------------------------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (755)
Q Consensus 464 ~--------------------------------------------~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~ 499 (755)
+ ...+|...|+++..+||+++|++|+.||.|.-||.
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence 2 12457788999999999999999999999999998
Q ss_pred CCCeEeee------ee-----------------------EE---------------------------------------
Q 004410 500 KDNQLYQQ------NQ-----------------------IC--------------------------------------- 511 (755)
Q Consensus 500 ~~~~~~~~------~~-----------------------~~--------------------------------------- 511 (755)
.++..-.. .+ +.
T Consensus 350 ~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv 429 (603)
T KOG0318|consen 350 GSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV 429 (603)
T ss_pred CCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence 65432100 00 00
Q ss_pred -eccccc----CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 512 -LQGKKK----LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 512 -~~~~~~----~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
++.... ...-...+++++| ++..+++|+.|+.|+||.+......-......|.+.|++++||||+.|||++...
T Consensus 430 ~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~ 508 (603)
T KOG0318|consen 430 LLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS 508 (603)
T ss_pred EEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC
Confidence 000000 0112356788899 9999999999999999998875544444457899999999999999999999999
Q ss_pred CcEEEEEcCCCCcccCCCccccceeeeecCCeEEEEcCCCC
Q 004410 587 SNIYIWNYSNQDKSSSRSKSIWSCESFLSHNVSVAIPWVGL 627 (755)
Q Consensus 587 g~I~iWd~~~~~~~~~~~~~~~~~~~f~~~~~~va~~w~g~ 627 (755)
+.|.+||+.+.+. ....|. | .......++|++.
T Consensus 509 rkvv~yd~~s~~~----~~~~w~---F-HtakI~~~aWsP~ 541 (603)
T KOG0318|consen 509 RKVVLYDVASREV----KTNRWA---F-HTAKINCVAWSPN 541 (603)
T ss_pred CcEEEEEcccCce----ecceee---e-eeeeEEEEEeCCC
Confidence 9999999998763 111122 1 2244557888654
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-30 Score=279.47 Aligned_cols=335 Identities=21% Similarity=0.260 Sum_probs=268.6
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeec-ccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
.+.+++.++.||+..|+++...+.+++|++..+. ..+.+++ |+++|..|+|+|.|.+||+|+.|+.|+|||+
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk-------~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi 134 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGK-------LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDI 134 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEcccch-------HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEe
Confidence 3567789999999999999999999999987652 3345666 9999999999999999999999999999999
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
..+.+.+.+..++..+..+.|.++... .....+..++.+.+|+...... .++.+..|.+.|++
T Consensus 135 ~~~~~th~fkG~gGvVssl~F~~~~~~--------------~lL~sg~~D~~v~vwnl~~~~t---cl~~~~~H~S~vts 197 (775)
T KOG0319|consen 135 KNGYCTHSFKGHGGVVSSLLFHPHWNR--------------WLLASGATDGTVRVWNLNDKRT---CLHTMILHKSAVTS 197 (775)
T ss_pred eCCEEEEEecCCCceEEEEEeCCccch--------------hheeecCCCceEEEEEcccCch---HHHHHHhhhhheee
Confidence 999999999998888888888776543 2234566777788887654322 57788899999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEE-------------------------------------------------
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLR------------------------------------------------- 423 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~------------------------------------------------- 423 (755)
+++++++ .+++++.|+.|.|||+.+.++++
T Consensus 198 L~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~ 277 (775)
T KOG0319|consen 198 LAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQR 277 (775)
T ss_pred eeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhc
Confidence 9999999 89999999999999874221100
Q ss_pred ------------------------------------------------------------------------E-------
Q 004410 424 ------------------------------------------------------------------------V------- 424 (755)
Q Consensus 424 ------------------------------------------------------------------------~------- 424 (755)
.
T Consensus 278 ~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~ 357 (775)
T KOG0319|consen 278 QSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY 357 (775)
T ss_pred cCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc
Confidence 0
Q ss_pred ----EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-----EeccCCcceEEEEEccCC-CeEEEEeCCCcE
Q 004410 425 ----FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDG-KGGIVGTMTGNC 494 (755)
Q Consensus 425 ----~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-----~~~~~~~~V~~v~~spdg-~~la~gs~dg~I 494 (755)
-+|...|.++.... ++.+|++|+.|.++++|.+..+... ...+|...|.+++++..+ .+|++++.|+++
T Consensus 358 c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl 436 (775)
T KOG0319|consen 358 CQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL 436 (775)
T ss_pred eEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence 01445555555333 5679999999999999988544322 467899999999997755 678999999999
Q ss_pred EEEECCCCeEeeeeeEE--ecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEE
Q 004410 495 RFYDIKDNQLYQQNQIC--LQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFAT 572 (755)
Q Consensus 495 ~iwD~~~~~~~~~~~~~--~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~ 572 (755)
++|++...+.... ++. .......|.+.|++++++| +..++++|+.|.+.+||++.+ ....+.+.+|...|.++.
T Consensus 437 K~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~--~~l~~vLsGH~RGvw~V~ 512 (775)
T KOG0319|consen 437 KLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ--LRLLGVLSGHTRGVWCVS 512 (775)
T ss_pred EEecCCCcccccc-cceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccC--ceEEEEeeCCccceEEEE
Confidence 9999987322211 121 2223457899999999999 889999999999999999995 444555589999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 573 FTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 573 fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|++..+.++|+|.|++|+||.+.+..
T Consensus 513 Fs~~dq~laT~SgD~TvKIW~is~fS 538 (775)
T KOG0319|consen 513 FSKNDQLLATCSGDKTVKIWSISTFS 538 (775)
T ss_pred eccccceeEeccCCceEEEEEeccce
Confidence 99999999999999999999999876
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=1.1e-29 Score=303.72 Aligned_cols=297 Identities=14% Similarity=0.161 Sum_probs=233.4
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccc-cccceeeecccccEEEEEEec-CCCEEEEEcCCCcE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV 308 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~-~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I 308 (755)
+..|.+.+.+++|+|+|++||+|+.|+.|+||+.......... ......+. +...|.+++|+| ++.+||+++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 3446677888999999999999999999999997542111000 01112233 456899999987 57899999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
+|||+.+++. +..+.+|.
T Consensus 558 ~lWd~~~~~~--------------------------------------------------------------~~~~~~H~ 575 (793)
T PLN00181 558 QVWDVARSQL--------------------------------------------------------------VTEMKEHE 575 (793)
T ss_pred EEEECCCCeE--------------------------------------------------------------EEEecCCC
Confidence 9999876643 34456899
Q ss_pred CCEEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe--EE
Q 004410 389 SEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VV 464 (755)
Q Consensus 389 ~~V~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~--~~ 464 (755)
..|++++|+| ++ +|++++.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.||.|++||+++.. ..
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~ 655 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC 655 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce
Confidence 9999999997 55 89999999999999999999998888778899999976589999999999999999998765 33
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
.+..|...|.++.|. ++.+|++++.|++|++||++......... .......|...++.+.|+| ++.+|++|+.|+.
T Consensus 656 ~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~--~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~ 731 (793)
T PLN00181 656 TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET--PLHSFMGHTNVKNFVGLSV-SDGYIATGSETNE 731 (793)
T ss_pred EecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc--ceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCE
Confidence 567888999999997 78899999999999999998542100000 0001234667889999999 7889999999999
Q ss_pred EEEEECCcceeeEEE-----------eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 545 VRVLCGENVVGKFKA-----------SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 545 I~iwd~~~~~~~~~~-----------~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
|++|+.......... ....+...|.+++|++++.+|++|+.||.|+||++
T Consensus 732 v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 732 VFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999997643222111 01234457999999999999999999999999996
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=3.2e-30 Score=250.68 Aligned_cols=257 Identities=24% Similarity=0.427 Sum_probs=218.0
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
..+.+|++.|..++|+|+|.+|||||.|..|.+|++....
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------- 80 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------- 80 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------------------------
Confidence 3478999999999999999999999999999999974332
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~ 435 (755)
+....+.+|.+.|..+.|.+++ .|++++.|++|+.||++++++++.++ |..-|+.+.
T Consensus 81 ---------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~ 139 (338)
T KOG0265|consen 81 ---------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD 139 (338)
T ss_pred ---------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC
Confidence 1134467999999999999999 99999999999999999999999985 999999998
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
-+.....++.+|+.|+++++||++++..++....+..+++++|..++..+++|+-|+.|++||++.+.....
T Consensus 140 p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~-------- 211 (338)
T KOG0265|consen 140 PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT-------- 211 (338)
T ss_pred ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE--------
Confidence 665455678899999999999999999998888889999999999999999999999999999998877653
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee------eEEEeeeccCCceEEEEEecCCCEEEEEeCCCcE
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG------KFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNI 589 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~------~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I 589 (755)
...|...|+.+..+| ++.++++-+.|.++++||...... .+.+...........++|+|++.++.+|+.|..+
T Consensus 212 lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 212 LSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV 290 (338)
T ss_pred eecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE
Confidence 344678999999999 999999999999999999875432 2333222223345678999999999999999999
Q ss_pred EEEEcCCCCcccCCC
Q 004410 590 YIWNYSNQDKSSSRS 604 (755)
Q Consensus 590 ~iWd~~~~~~~~~~~ 604 (755)
++||.....-....+
T Consensus 291 yvwd~~~r~~lyklp 305 (338)
T KOG0265|consen 291 YVWDTTSRRILYKLP 305 (338)
T ss_pred EEeecccccEEEEcC
Confidence 999988765333333
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.1e-30 Score=283.67 Aligned_cols=272 Identities=25% Similarity=0.367 Sum_probs=221.7
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
...++|..|++|+.+||.|-.|..|++|.+...+ +..++....-. . .+ ..+.+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~-------~-------~d------------~~sad 430 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDASDLS-------N-------ID------------TESAD 430 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchhhhc-------c-------cc------------ccccc
Confidence 3569999999999999999999999999987542 11111100000 0 00 00000
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCC
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD 441 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~ 441 (755)
......+. .......++.||.++|..+.|+|+. +|++++.|++||+|.+.+..++..+. |..+|.+++|+| .|
T Consensus 431 ~~~~~~D~----~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~G 505 (707)
T KOG0263|consen 431 VDVDMLDD----DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RG 505 (707)
T ss_pred hhhhhccc----cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-Cc
Confidence 00000000 0112245688999999999999999 99999999999999999999998884 999999999999 89
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 442 NYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 442 ~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
-||++++.|++-++|........ -+.+|...|.|+.|+|+..++++|+.|.+|++||+.+|..+.. ...|.
T Consensus 506 yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi--------F~GH~ 577 (707)
T KOG0263|consen 506 YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI--------FTGHK 577 (707)
T ss_pred eEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE--------ecCCC
Confidence 99999999999999999887666 4778899999999999999999999999999999999988764 24478
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+|++++|+| ++.+|++|+.|+.|.+||+.+....... .+|.+.|.++.|+.||..||+|+.|++|++||+....
T Consensus 578 ~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 578 GPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQL--KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhh--hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999 9999999999999999999886555444 7789999999999999999999999999999997654
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.3e-31 Score=263.73 Aligned_cols=266 Identities=23% Similarity=0.457 Sum_probs=224.3
Q ss_pred ecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeee
Q 004410 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF 322 (755)
Q Consensus 243 ~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~ 322 (755)
+.-|+..+++|..|.+|+|||.+. +.+...+.||+|.|.|+.| |.+.|++|+.|.+|+|||+++++.
T Consensus 203 lQYDD~kiVSGlrDnTikiWD~n~-------~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~---- 269 (499)
T KOG0281|consen 203 LQYDDEKIVSGLRDNTIKIWDKNS-------LECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEP---- 269 (499)
T ss_pred EEecchhhhcccccCceEEecccc-------HHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCch----
Confidence 345677889999999999999653 3455678999999999999 567999999999999999998864
Q ss_pred ecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeE
Q 004410 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL 402 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L 402 (755)
+.++.+|...|..+.|+. |++
T Consensus 270 ----------------------------------------------------------l~tlihHceaVLhlrf~n-g~m 290 (499)
T KOG0281|consen 270 ----------------------------------------------------------LNTLIHHCEAVLHLRFSN-GYM 290 (499)
T ss_pred ----------------------------------------------------------hhHHhhhcceeEEEEEeC-CEE
Confidence 445668999999999984 599
Q ss_pred EEEeCCCcEEEEeCCCCeEEE---EE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEE
Q 004410 403 LSSSADKTVRLWQVGIDRCLR---VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVC 477 (755)
Q Consensus 403 ~s~s~Dg~V~iWdl~s~~~~~---~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~ 477 (755)
++++.|.+|.+||+....-+. ++ +|...|+.+.|+ .+++++++.|.+|++|++.+++.+ .+.+|+..|-|+.
T Consensus 291 vtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ 367 (499)
T KOG0281|consen 291 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 367 (499)
T ss_pred EEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccccceehh
Confidence 999999999999998665322 22 599999999995 469999999999999999999998 5788999998888
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceee-
Q 004410 478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGK- 556 (755)
Q Consensus 478 ~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~- 556 (755)
| .|+++++|+.|.+|++||+..|.++.. ...|..-|.++.| +.+.+++|+.||+|+|||+......
T Consensus 368 Y--r~rlvVSGSSDntIRlwdi~~G~cLRv--------LeGHEeLvRciRF---d~krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 368 Y--RDRLVVSGSSDNTIRLWDIECGACLRV--------LEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred c--cCeEEEecCCCceEEEEeccccHHHHH--------HhchHHhhhheee---cCceeeeccccceEEEEecccccCCc
Confidence 7 789999999999999999999988653 3346678999999 5589999999999999998765443
Q ss_pred ------EEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 557 ------FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 557 ------~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.......|.+.|..+.| |...|++++.|.+|.|||+.++-
T Consensus 435 a~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 435 APASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred ccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCC
Confidence 22233568889999998 56789999999999999998876
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=8.3e-29 Score=265.79 Aligned_cols=360 Identities=19% Similarity=0.293 Sum_probs=264.4
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
.+-.+.+|..+|+++.|+..|..||+|+.|+.|.|||+-..... -.+.||++.|+.+-|..+.++|++.+.|+
T Consensus 99 ~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl-------~rL~GHkd~iT~~~F~~~~~~lvS~sKDs 171 (888)
T KOG0306|consen 99 ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL-------FRLRGHKDSITQALFLNGDSFLVSVSKDS 171 (888)
T ss_pred eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceee-------EEeecchHHHhHHhccCCCeEEEEeccCc
Confidence 34467889999999999999999999999999999997643322 24889999999999998889999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEee------CCCCceeEEee--cCcc---------------------------
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTI------NHLSQLIPIDV--DKEK--------------------------- 351 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~~--------------------------- 351 (755)
.|++||+.+..+..+.-.+......+.+.. .....+..+.. ..+.
T Consensus 172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~ 251 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLV 251 (888)
T ss_pred eEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEe
Confidence 999999999887766554444333332221 00111111100 0000
Q ss_pred -----------------------------------------------------------------------eeeeeeeee
Q 004410 352 -----------------------------------------------------------------------IDKTKSLRK 360 (755)
Q Consensus 352 -----------------------------------------------------------------------~~~~~~~~~ 360 (755)
+........
T Consensus 252 ~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~ 331 (888)
T KOG0306|consen 252 TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPS 331 (888)
T ss_pred ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEec
Confidence 000000000
Q ss_pred cCC-ceEEEeCCcc---eecc--Cc--------cceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe
Q 004410 361 SSD-LTCVVLPPKV---FRLL--EK--------PLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS 426 (755)
Q Consensus 361 ~~~-~~~~~~~~~~---~~~~--~~--------~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~ 426 (755)
... ..++.+.... +.+. .+ ...++.||...|..++++.+..++..+..+.|++|+..+.+|++++.
T Consensus 332 ~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~ 411 (888)
T KOG0306|consen 332 GGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT 411 (888)
T ss_pred CCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec
Confidence 000 0111111000 0000 00 11456799999999999999966666677899999999999999996
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
.. ++.+..|.| .++++++|...|.+.+||+.....+ ....|.+.|..++.+||++.+++|+.|.+|++||..--.-.
T Consensus 412 ~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 412 CG-YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred cc-cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence 55 899999999 9999999999999999999998877 56689999999999999999999999999999997421110
Q ss_pred ee---eeEEecc-cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEE
Q 004410 506 QQ---NQICLQG-KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 506 ~~---~~~~~~~-~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
.. ..+.+.. ..-.-...|.++.++| |+++|+++--|++|+||-+.+.... ..+.+|.-+|.++.+|||++.|+
T Consensus 490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFf--lsLYGHkLPV~smDIS~DSkliv 566 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFF--LSLYGHKLPVLSMDISPDSKLIV 566 (888)
T ss_pred CcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeee--eeecccccceeEEeccCCcCeEE
Confidence 00 0011111 0111246799999999 9999999999999999998885444 44499999999999999999999
Q ss_pred EEeCCCcEEEEEcCCCC
Q 004410 582 SPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~ 598 (755)
|||.|.+|+||-++=|.
T Consensus 567 TgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGD 583 (888)
T ss_pred eccCCCceEEeccccch
Confidence 99999999999998887
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=276.12 Aligned_cols=288 Identities=18% Similarity=0.319 Sum_probs=244.5
Q ss_pred eeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEE
Q 004410 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (755)
Q Consensus 232 ~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vW 311 (755)
+....++..++|+|...+++++-..|.|.+||++-+. +...|..|+|+|..+.|+|++.++++||.|-.|+||
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhh-------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEE
Confidence 3345677889999999999999999999999987543 335688999999999999999999999999999999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
+..+.++ +.++.||...|
T Consensus 79 nYk~rrc--------------------------------------------------------------lftL~GHlDYV 96 (1202)
T KOG0292|consen 79 NYKTRRC--------------------------------------------------------------LFTLLGHLDYV 96 (1202)
T ss_pred eccccee--------------------------------------------------------------hhhhcccccee
Confidence 9977654 45678999999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC--------
Q 004410 392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-------- 461 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-------- 461 (755)
..+.|++.- .++++|.|.+|+||+..+++|+.++ +|+.+|.|.+|+| ..++++++|.|.+|||||+..-
T Consensus 97 Rt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 97 RTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred EEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCC
Confidence 999999988 9999999999999999999999999 5999999999999 9999999999999999998531
Q ss_pred --------------------eEE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC
Q 004410 462 --------------------QVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP 519 (755)
Q Consensus 462 --------------------~~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~ 519 (755)
.++ .+.+|...|+.++|+|.-..|++|+.|..|++|.+...+.... .....|
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv------DtcrgH 249 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV------DTCRGH 249 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee------hhhhcc
Confidence 012 2557888899999999999999999999999999987654321 124457
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 520 GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 520 ~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.+.|+++-|+| ...+|++.+.|+.|+|||+......... .......+.++-+|..+++++| .|+-+.+|.++..++
T Consensus 250 ~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tf--rrendRFW~laahP~lNLfAAg-HDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 250 YNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTF--RRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERERP 325 (1202)
T ss_pred cCCcceEEecC-ccceeEecCCCccEEEEecccccceeee--eccCCeEEEEEecCCcceeeee-cCCceEEEEEcccCc
Confidence 88999999999 8899999999999999999876555544 4456788899999998866654 677788888876553
No 36
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.1e-30 Score=268.50 Aligned_cols=289 Identities=17% Similarity=0.196 Sum_probs=240.5
Q ss_pred cccceeeeeccCcceeecC-CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 227 KLGAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
.+-++.+|.+.++++.|.| .+++|++++.|+.|+||++-... .+.+++.+|..+|.+++|+++|..++|++.|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR------RCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc------ceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 3445678899999999999 89999999999999999976533 3456789999999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.|++||+++|+++..+..
T Consensus 280 ~~lKlwDtETG~~~~~f~~------------------------------------------------------------- 298 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHL------------------------------------------------------------- 298 (503)
T ss_pred eeeeeeccccceEEEEEec-------------------------------------------------------------
Confidence 9999999999987655431
Q ss_pred CCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 386 gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
...+.|+.|+|++ .+++|+.|+.|+.||+++++.++.+. |-+.|..|.|-+ ++.+|++.+.|+.++||+.+..-
T Consensus 299 --~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v 375 (503)
T KOG0282|consen 299 --DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPV 375 (503)
T ss_pred --CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCc
Confidence 2356789999988 88999999999999999999888884 889999999999 99999999999999999999887
Q ss_pred EEEec--cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC--CCCeEEEEEcCCCCCEEEE
Q 004410 463 VVDYT--DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP--GKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 463 ~~~~~--~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~--~~~I~~v~fsp~d~~~l~s 538 (755)
.+... .......++..+|+++.++.-+.|+.|.+|.+...-... .......| .+.-..+.|+| |+.+|++
T Consensus 376 ~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n-----kkK~feGh~vaGys~~v~fSp-DG~~l~S 449 (503)
T KOG0282|consen 376 PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN-----KKKRFEGHSVAGYSCQVDFSP-DGRTLCS 449 (503)
T ss_pred cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC-----HhhhhcceeccCceeeEEEcC-CCCeEEe
Confidence 66433 334456789999999999999999999999865432211 11111112 23456789999 9999999
Q ss_pred EECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC-CEEEEEeCCCcEEEEE
Q 004410 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG-KHVVSPSEDSNIYIWN 593 (755)
Q Consensus 539 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd 593 (755)
|..||.+.+||..+....-+. ..|..+++.+.|+|.. ..+||++.||.|++|+
T Consensus 450 GdsdG~v~~wdwkt~kl~~~l--kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 450 GDSDGKVNFWDWKTTKLVSKL--KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCccEEEeechhhhhhhcc--ccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999998875554444 6688999999999965 5799999999999996
No 37
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.6e-28 Score=232.70 Aligned_cols=264 Identities=16% Similarity=0.261 Sum_probs=218.5
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
++......|+.+.+.||++.||+++. ..||+||++.... .+..++.+|++.|.++.|..||++++||++||+++
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-----~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k 108 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-----NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK 108 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-----CceeEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence 33333345778999999999998876 4799999986543 24467899999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
|||+....+ .....|..
T Consensus 109 IWdlR~~~~---------------------------------------------------------------qR~~~~~s 125 (311)
T KOG0315|consen 109 IWDLRSLSC---------------------------------------------------------------QRNYQHNS 125 (311)
T ss_pred EEeccCccc---------------------------------------------------------------chhccCCC
Confidence 999976432 22345779
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE---
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--- 463 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~--- 463 (755)
+|+++..+|+. .|+++..+|.|++||+....|...+- ....|.++.+.| ++.+++.+...|..++|++...+.
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCcccc
Confidence 99999999998 99999999999999999998877773 567899999999 999999999999999999976532
Q ss_pred ----EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 464 ----VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 464 ----~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.++..|...+..+.++||+++||+++.|.+++||++.+. +..+. ....|...+.+++|+. ++.+|+++
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~------~l~gh~rWvWdc~FS~-dg~YlvTa 276 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLEL------VLTGHQRWVWDCAFSA-DGEYLVTA 276 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEE------EeecCCceEEeeeecc-CccEEEec
Confidence 257788899999999999999999999999999999987 22221 2344667999999999 99999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEE
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATF 573 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~f 573 (755)
+.|+.+++|+....+..... .+|.....+++.
T Consensus 277 ssd~~~rlW~~~~~k~v~qy--~gh~K~~vc~~l 308 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGKEVRQY--QGHHKAAVCVAL 308 (311)
T ss_pred CCCCceeecccccCceeeec--CCcccccEEEEe
Confidence 99999999999887655554 556666555554
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.1e-29 Score=233.24 Aligned_cols=244 Identities=28% Similarity=0.510 Sum_probs=210.8
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+.+..|+++|.++.|+-||+|.+|++.|.+|++|+...+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l--------------------------------------- 51 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL--------------------------------------- 51 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce---------------------------------------
Confidence 45778999999999999999999999999999999876654
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~ 435 (755)
++++.+|..+|.+++.+.|+ .+++++.|+.|.+||+.+|+.++.|. |.+.|+.++
T Consensus 52 -----------------------iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~ 108 (307)
T KOG0316|consen 52 -----------------------IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVR 108 (307)
T ss_pred -----------------------eeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEE
Confidence 56678899999999999999 99999999999999999999999995 999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCe--EEE-eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQ--VVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~--~~~-~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
|+. +...+++|+.|.++++||.++.. +++ +......|.+|.. .+..|++|+.||+++.||++.+.+..
T Consensus 109 fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~s------ 179 (307)
T KOG0316|consen 109 FNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSS------ 179 (307)
T ss_pred ecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeeh------
Confidence 998 89999999999999999998764 333 4456678888888 55789999999999999999998753
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce--eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEE
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV--GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~ 590 (755)
..-+.+|+++.|++ +++..++++.|+++++.|-.+.+ ..+++ ..+...-...+++....++++|++||.|+
T Consensus 180 ----Dy~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkG--hkn~eykldc~l~qsdthV~sgSEDG~Vy 252 (307)
T KOG0316|consen 180 ----DYFGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKG--HKNMEYKLDCCLNQSDTHVFSGSEDGKVY 252 (307)
T ss_pred ----hhcCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcc--cccceeeeeeeecccceeEEeccCCceEE
Confidence 23467999999999 99999999999999999977644 33333 33444556778888889999999999999
Q ss_pred EEEcCCCCc
Q 004410 591 IWNYSNQDK 599 (755)
Q Consensus 591 iWd~~~~~~ 599 (755)
+||+.+...
T Consensus 253 ~wdLvd~~~ 261 (307)
T KOG0316|consen 253 FWDLVDETQ 261 (307)
T ss_pred EEEecccee
Confidence 999998763
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.6e-29 Score=261.42 Aligned_cols=286 Identities=20% Similarity=0.291 Sum_probs=244.9
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
.+.++|.++.|+|...+++++--+|.|.||++++.. +.+.+.-.+-+|.+.+|-+-.+++++|+.|..|+||+
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-------mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-------MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccce-------eeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 357899999999999999999999999999987654 3345666788999999999999999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
..+++. ++.|..|..-|.
T Consensus 84 ynt~ek--------------------------------------------------------------V~~FeAH~DyIR 101 (794)
T KOG0276|consen 84 YNTGEK--------------------------------------------------------------VKTFEAHSDYIR 101 (794)
T ss_pred ccccee--------------------------------------------------------------eEEeecccccee
Confidence 988865 456778999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCC-eEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Eecc
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTD 468 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~-~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~ 468 (755)
+++.+|.. +++++|.|-+|++||.+.+ .|.++| +|..+|.+++|+|.|.+.|++++.|++|+||.+....+. ++.+
T Consensus 102 ~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g 181 (794)
T KOG0276|consen 102 SIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG 181 (794)
T ss_pred eeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeec
Confidence 99999999 9999999999999998754 677777 599999999999999999999999999999999887665 7889
Q ss_pred CCcceEEEEEccCC--CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 469 IREIVSAVCYCPDG--KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 469 ~~~~V~~v~~spdg--~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
|...|.+++|-+-| .+|++|+.|.+|+|||..+..++++ ...|...|..+.|+| .-.++++|+.||+++
T Consensus 182 HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T--------LeGHt~Nvs~v~fhp-~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 182 HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT--------LEGHTNNVSFVFFHP-ELPIIISGSEDGTVR 252 (794)
T ss_pred cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH--------hhcccccceEEEecC-CCcEEEEecCCccEE
Confidence 99999999999854 7999999999999999999988765 334678899999999 889999999999999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
||...+....-.. .-....+++++-.+.+..++.|.+.|.|. .++-.+++
T Consensus 253 iWhs~Ty~lE~tL--n~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP 302 (794)
T KOG0276|consen 253 IWNSKTYKLEKTL--NYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEP 302 (794)
T ss_pred EecCcceehhhhh--hcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCC
Confidence 9998775443332 23456899999888888888887776654 45555443
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-29 Score=249.07 Aligned_cols=253 Identities=21% Similarity=0.329 Sum_probs=224.8
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+.+.+|..+|+.+-|+|+-..++++++|++|++||..+++.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~------------------------------------- 142 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL------------------------------------- 142 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------------------------------------
Confidence 4456788999999999999999999999999999999988864
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CeEEEEE-ecCCcEE
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-DRCLRVF-SHNNYVT 432 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-~~~~~~~-~h~~~V~ 432 (755)
...++||...|.+++|+..| +|++++.|-.+++||..+ .+|++.. +|...|.
T Consensus 143 -------------------------e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS 197 (406)
T KOG0295|consen 143 -------------------------ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVS 197 (406)
T ss_pred -------------------------hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccccee
Confidence 34568999999999999999 999999999999999876 4555554 6999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
+++|-| .++++++++.|.+|+.|++.++-++ ++.+|.+.|..+..+.||..+++++.|.++++|-+.+++....
T Consensus 198 ~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~---- 272 (406)
T KOG0295|consen 198 SVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE---- 272 (406)
T ss_pred eEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh----
Confidence 999999 8999999999999999999999888 6889999999999999999999999999999999998855432
Q ss_pred ecccccCCCCCeEEEEEcCC--------------CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC
Q 004410 512 LQGKKKLPGKRITGFQFSPS--------------DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 512 ~~~~~~~~~~~I~~v~fsp~--------------d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg 577 (755)
...|...|.+++|.|. .+.++.+++.|++|++||+.+....+.. .+|...|..++|+|.|
T Consensus 273 ----lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL--~ghdnwVr~~af~p~G 346 (406)
T KOG0295|consen 273 ----LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL--VGHDNWVRGVAFSPGG 346 (406)
T ss_pred ----hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE--ecccceeeeeEEcCCC
Confidence 3346778889988772 2358999999999999999998877777 8999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCccc
Q 004410 578 KHVVSPSEDSNIYIWNYSNQDKSS 601 (755)
Q Consensus 578 ~~L~sgs~Dg~I~iWd~~~~~~~~ 601 (755)
+||+++.+|+++++||+++.+...
T Consensus 347 kyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 347 KYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred eEEEEEecCCcEEEEEeccceeee
Confidence 999999999999999999988443
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=231.37 Aligned_cols=285 Identities=18% Similarity=0.274 Sum_probs=236.0
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
+++..+.++...+..+.|+-||++.++++.|.+|++|+...+. +.+++.+|...|..++.+.|...+++|+.|
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccccccccccCCCC
Confidence 4566788889999999999999999999999999999965433 457899999999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
..|.+||+.+|+. +..+.
T Consensus 81 k~v~vwDV~TGkv--------------------------------------------------------------~Rr~r 98 (307)
T KOG0316|consen 81 KAVQVWDVNTGKV--------------------------------------------------------------DRRFR 98 (307)
T ss_pred ceEEEEEcccCee--------------------------------------------------------------eeecc
Confidence 9999999999875 45678
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--eEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~--~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
+|.+.|+.++|+.+. .+++|+.|.+|++||.++. ++++++. ..+.|.+|.++ +..+++|+.||++|.||++.+
T Consensus 99 gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G 175 (307)
T KOG0316|consen 99 GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKG 175 (307)
T ss_pred cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecc
Confidence 999999999999988 9999999999999998754 6677774 67889999874 588999999999999999999
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
+... .....+|++++|++|++..++++.++++++.|-.+++++...+ +++. ...-...+++. ....+++|+.
T Consensus 176 ~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk----Ghkn--~eykldc~l~q-sdthV~sgSE 247 (307)
T KOG0316|consen 176 TLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK----GHKN--MEYKLDCCLNQ-SDTHVFSGSE 247 (307)
T ss_pred eeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc----cccc--ceeeeeeeecc-cceeEEeccC
Confidence 8763 3345789999999999999999999999999999999876422 2111 11234456666 6789999999
Q ss_pred CCcEEEEECCcceeeEEEeeeccCCc-eEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 542 DSLVRVLCGENVVGKFKASAFRVAGS-QMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~~~~~~~~~-v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
||.|++||+.+.....+. ..+... +++++++|.-..++++.. +.+.+|-
T Consensus 248 DG~Vy~wdLvd~~~~sk~--~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 248 DGKVYFWDLVDETQISKL--SVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred CceEEEEEeccceeeeee--ccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 999999999886666554 334444 789999998877777754 4566664
No 42
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=255.33 Aligned_cols=289 Identities=19% Similarity=0.279 Sum_probs=250.8
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+..|...+..+.|-++...|++|+.|..|++|+...... ....+|.|..+.|+.++|.+++.++++++.|+.++
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-----~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-----ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh-----hhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 4566777888899999999999999999999999875542 23456788889999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+|++...+. .+++.||.+
T Consensus 245 ~Wnvd~~r~--------------------------------------------------------------~~TLsGHtd 262 (459)
T KOG0288|consen 245 LWNVDSLRL--------------------------------------------------------------RHTLSGHTD 262 (459)
T ss_pred eeeccchhh--------------------------------------------------------------hhhhccccc
Confidence 999976643 567889999
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~ 468 (755)
.|+++.|.... .+++|+.|.+|++||+....|.+++-....+..|..+ ...+++|..|++||+||+++...+....
T Consensus 263 kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~ 339 (459)
T KOG0288|consen 263 KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVP 339 (459)
T ss_pred ceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeecccccceEEEeccCCceeeEee
Confidence 99999999877 6999999999999999999999998777778888875 4789999999999999999999988788
Q ss_pred CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
..+.|+++..+++|..|++++.|.++.+.|+++......+.. .+.+ .....+.++|+| ++.++++|+.||.|+||
T Consensus 340 ~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA--~g~k--~asDwtrvvfSp-d~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 340 LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA--EGFK--CASDWTRVVFSP-DGSYVAAGSADGSVYIW 414 (459)
T ss_pred cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec--cccc--cccccceeEECC-CCceeeeccCCCcEEEE
Confidence 888999999999999999999999999999999887765432 1222 234589999999 99999999999999999
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+..+.+.............|++++|+|.|.+|++++.++.+.+|.
T Consensus 415 ~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 415 SVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999988887775444444799999999999999999999999993
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=9.5e-28 Score=267.70 Aligned_cols=250 Identities=32% Similarity=0.563 Sum_probs=211.5
Q ss_pred eeecc-cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 279 EFLAH-EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 279 ~l~~H-~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
.+.+| ...|.++.|+++|++|++++.|+.+++|+......
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------------------------- 193 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------------------------- 193 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------------------------
Confidence 34444 78999999999999999999999999999854431
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeC-CCCeEEEEE-ecCCcEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRCLRVF-SHNNYVTSV 434 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl-~s~~~~~~~-~h~~~V~~i 434 (755)
.....+.+|...|.+++|+|++ ++++++.|++|+|||+ ..+.+++++ .|...|+++
T Consensus 194 ---------------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~ 252 (456)
T KOG0266|consen 194 ---------------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSV 252 (456)
T ss_pred ---------------------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEE
Confidence 0134457899999999999999 9999999999999999 556888888 599999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe--eeeeEE
Q 004410 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY--QQNQIC 511 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~--~~~~~~ 511 (755)
+|+| +++++++|+.|++|+|||+++++++ .+..|...|++++|+++|.+|++++.||.|++||+.++... ..
T Consensus 253 ~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~---- 327 (456)
T KOG0266|consen 253 AFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL---- 327 (456)
T ss_pred EecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec----
Confidence 9999 7799999999999999999998887 68899999999999999999999999999999999999843 21
Q ss_pred ecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCC---ceEEEEEecCCCEEEEEeCCCc
Q 004410 512 LQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAG---SQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 512 ~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~---~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
+.+. .... .++.++|+| ++.++++++.|+.+++||+......... ..|.. .+.+...++.++++++|+.|+.
T Consensus 328 ~~~~-~~~~-~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~ 402 (456)
T KOG0266|consen 328 LSGA-ENSA-PVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTY--TGHSNLVRCIFSPTLSTGGKLIYSGSEDGS 402 (456)
T ss_pred ccCC-CCCC-ceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeee--cccCCcceeEecccccCCCCeEEEEeCCce
Confidence 1111 1122 799999999 9999999999999999999876544444 33333 4556666889999999999999
Q ss_pred EEEEEcCCCC
Q 004410 589 IYIWNYSNQD 598 (755)
Q Consensus 589 I~iWd~~~~~ 598 (755)
|++||+.++.
T Consensus 403 v~~~~~~s~~ 412 (456)
T KOG0266|consen 403 VYVWDSSSGG 412 (456)
T ss_pred EEEEeCCccc
Confidence 9999999866
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=7e-29 Score=245.83 Aligned_cols=246 Identities=19% Similarity=0.340 Sum_probs=216.0
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.+.+.+|.+.|.|+++.|-.++++||+.|++|+|||+.+++.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-------------------------------------- 185 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-------------------------------------- 185 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--------------------------------------
Confidence 345789999999999999999999999999999999999864
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSV 434 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i 434 (755)
..++.||...|..+++++-. +|++++.|+.|+.||++..+.++.+ +|-..|.|+
T Consensus 186 ------------------------kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 186 ------------------------KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred ------------------------EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence 34567899999999999988 9999999999999999999999887 699999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEec
Q 004410 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ 513 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~ 513 (755)
+.+| .-+.|++|+.|.++||||+++...+ .+.+|...|..+.+.|-...+++|+.|++|++||++.++....
T Consensus 242 ~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t------ 314 (460)
T KOG0285|consen 242 DLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT------ 314 (460)
T ss_pred eccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe------
Confidence 9999 8899999999999999999998766 6888999999999999888999999999999999999987643
Q ss_pred ccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 514 GKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 514 ~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
...|...+.+++.+| ....+++++.| .|+-|++........ ..+|...|.+++...|| ++++|++.|.|.+||
T Consensus 315 --lt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~n--lsgh~~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 315 --LTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQN--LSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred --eecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhc--cccccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 223667899999999 77777777766 578888776443333 37788999999998775 788999999999999
Q ss_pred cCCCC
Q 004410 594 YSNQD 598 (755)
Q Consensus 594 ~~~~~ 598 (755)
..++-
T Consensus 388 wksg~ 392 (460)
T KOG0285|consen 388 WKSGH 392 (460)
T ss_pred cCcCc
Confidence 99875
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4.2e-28 Score=242.57 Aligned_cols=283 Identities=19% Similarity=0.258 Sum_probs=233.1
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC---CEEEEEcCCCcEEEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRVW 311 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg---~~LaSgs~Dg~I~vW 311 (755)
.|.|.++... ++++++|+.||.++||+..... ..++.||.++|.+++|.-.. ..|++++.|.++++|
T Consensus 105 dDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~--------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 105 DDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS--------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred hhhhhhhccc--CceEEEeecCCeeEEEecCCce--------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 4566666655 7899999999999999976433 34678999999999885433 369999999999999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
.++.++... +.+..-.||...|
T Consensus 175 ~~~~~~~~~----------------------------------------------------------~~~~~~~GHk~~V 196 (423)
T KOG0313|consen 175 KWNVGENKV----------------------------------------------------------KALKVCRGHKRSV 196 (423)
T ss_pred EecCchhhh----------------------------------------------------------hHHhHhcccccce
Confidence 987765321 1123335999999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCC-------------------------CeEEEEE-ecCCcEEEEEEeeCCCCEE
Q 004410 392 LDLSWSKNG-FLLSSSADKTVRLWQVGI-------------------------DRCLRVF-SHNNYVTSVAFNPVDDNYF 444 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-------------------------~~~~~~~-~h~~~V~~i~fsp~d~~~l 444 (755)
.++...+++ .+++|+.|.+|.||+..+ +.++.++ +|...|.++.|++ ...+
T Consensus 197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~ 274 (423)
T KOG0313|consen 197 DSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVI 274 (423)
T ss_pred eEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCce
Confidence 999999999 999999999999999321 1223333 4999999999986 7889
Q ss_pred EEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 445 ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
++++.|.+|+.||+.++..+........++++.++|..++|++|+.|..+++||.+++.--.. .. ....|...|.
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v-~~----s~~gH~nwVs 349 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV-SQ----SLIGHKNWVS 349 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCcee-EE----eeecchhhhh
Confidence 999999999999999999998888889999999999999999999999999999997643221 11 1334677999
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCcce-eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVV-GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
++.|+|.+..++++++.|+++++||.+... ..+.. .+|...|.++.|. ++.+|++|+.|.+|+|+.-.
T Consensus 350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI--~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI--AGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred heecCCCCceEEEEEecCCeEEEEEeccCCCcceee--ccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999999999999999999999999876 55555 7899999999997 67899999999999999754
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.8e-29 Score=244.23 Aligned_cols=287 Identities=22% Similarity=0.339 Sum_probs=238.8
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCccccc-ccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
..+.|+.|+|||++|++|+.||.|.||++-.+...-. .+.....+.-|+.+|.|+.||.|...||+|+.||.|+||.+.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 3456789999999999999999999999875542111 112223466789999999999999999999999999999999
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
+|.+++.+. ..|...|+++
T Consensus 294 tG~ClRrFd-------------------------------------------------------------rAHtkGvt~l 312 (508)
T KOG0275|consen 294 TGQCLRRFD-------------------------------------------------------------RAHTKGVTCL 312 (508)
T ss_pred cchHHHHhh-------------------------------------------------------------hhhccCeeEE
Confidence 998765543 3699999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe---ccC
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY---TDI 469 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~---~~~ 469 (755)
.|+.|+ .+++++.|.+|+|--+.+|++++.|. |..+|+...|.+ +|..+++++.||+|++|+..+.+++.. .+.
T Consensus 313 ~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~ 391 (508)
T KOG0275|consen 313 SFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGT 391 (508)
T ss_pred EEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCC
Confidence 999999 99999999999999999999999995 999999999999 999999999999999999999988742 234
Q ss_pred CcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 470 REIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 470 ~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
...|.++-.-| +...++++...++|+|.++...-. ..+. . -+..++...+...+| .+.++.+.+.|+.++-+
T Consensus 392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV-rsfs---S--GkREgGdFi~~~lSp-kGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV-RSFS---S--GKREGGDFINAILSP-KGEWIYCIGEDGVLYCF 464 (508)
T ss_pred cccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE-eeec---c--CCccCCceEEEEecC-CCcEEEEEccCcEEEEE
Confidence 45688888877 567899999999999999975433 2211 1 122456677888999 99999999999999999
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
........... .-|..-+..++-+|..+.|++-++||.+++|.
T Consensus 465 ~~~sG~LE~tl--~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 465 SVLSGKLERTL--PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EeecCceeeee--ecccccccccccCcccchhhhhcccchhhhcC
Confidence 87765544444 56778889999999999999999999999995
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1.7e-29 Score=254.42 Aligned_cols=242 Identities=19% Similarity=0.334 Sum_probs=209.1
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc-ccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
+..|-+.|+++.|+++|.++++|..+|.|++|+..-. ..+.+++|. ..|++++|+|+...++||+.||+|+
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchh--------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEE
Confidence 3456678899999999999999999999999996532 233455555 9999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
|||....+ +-..+.||.-
T Consensus 206 iWdf~~~k--------------------------------------------------------------ee~vL~GHgw 223 (464)
T KOG0284|consen 206 IWDFRMPK--------------------------------------------------------------EERVLRGHGW 223 (464)
T ss_pred EEeccCCc--------------------------------------------------------------hhheeccCCC
Confidence 99975442 2344689999
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC-eEEEe
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDY 466 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-~~~~~ 466 (755)
.|.++.|+|.. .|++++.|..|++||.+++.|+.++ .|...|..+.|+| ++++|++++.|..++++|+++. ++..+
T Consensus 224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred CcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 99999999988 9999999999999999999999998 4999999999999 8899999999999999999954 44578
Q ss_pred ccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 467 TDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 467 ~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
.+|+..|+++.|+| ...+|.+|+.||.|..|.+...+.+ ......|...|++++|+| =+.+|++|+.|.++
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-------~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~ 374 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-------GEIPPAHDGEIWSLAYHP-LGHILATGSNDRTV 374 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccc-------cCCCcccccceeeeeccc-cceeEeecCCCcce
Confidence 88999999999999 5678888999999999999844433 233456889999999999 89999999999999
Q ss_pred EEEECC
Q 004410 546 RVLCGE 551 (755)
Q Consensus 546 ~iwd~~ 551 (755)
++|.-.
T Consensus 375 rfw~r~ 380 (464)
T KOG0284|consen 375 RFWTRN 380 (464)
T ss_pred eeeccC
Confidence 999744
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=5.2e-27 Score=280.76 Aligned_cols=276 Identities=16% Similarity=0.304 Sum_probs=213.4
Q ss_pred CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEe
Q 004410 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335 (755)
Q Consensus 256 dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~ 335 (755)
+|.+++|+...... ........+.+|.+.|.+++|+|+|++||+|+.|+.|+||++....... ..
T Consensus 457 ~gl~~~~~~~~~~~--~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~------~~------- 521 (793)
T PLN00181 457 EGLCKYLSFSKLRV--KADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG------RD------- 521 (793)
T ss_pred hhhhhhhcccceEE--EEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc------cc-------
Confidence 56678887654322 1111223466799999999999999999999999999999975421000 00
Q ss_pred eCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC-C-eEEEEeCCCcEEE
Q 004410 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN-G-FLLSSSADKTVRL 413 (755)
Q Consensus 336 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~-~L~s~s~Dg~V~i 413 (755)
...+...+. +...|.+++|++. + +|++++.||+|++
T Consensus 522 -----------------------------------------~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 522 -----------------------------------------IHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred -----------------------------------------cccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 000112222 3457899999875 4 9999999999999
Q ss_pred EeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEc-cCCCeEEEEeCC
Q 004410 414 WQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC-PDGKGGIVGTMT 491 (755)
Q Consensus 414 Wdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~s-pdg~~la~gs~d 491 (755)
||+.+++.+..+ .|...|++++|+|.++.+|++|+.||+|++||++++..+....+...+.++.|+ ++|.+|++|+.|
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCC
Confidence 999999988888 499999999999767899999999999999999998877555556789999995 579999999999
Q ss_pred CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce----eeEEEeeeccCCc
Q 004410 492 GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV----GKFKASAFRVAGS 567 (755)
Q Consensus 492 g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~----~~~~~~~~~~~~~ 567 (755)
|.|++||+++...... ....|...|+.+.|. ++.++++++.|++|+|||..... ........+|...
T Consensus 640 g~I~iwD~~~~~~~~~-------~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 640 HKVYYYDLRNPKLPLC-------TMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred CeEEEEECCCCCccce-------EecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 9999999987642110 123467789999996 56789999999999999986421 1112223568888
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 568 QMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 568 v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+..++|++++.+|++|+.|+.|+||+...+
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999999999999999997654
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=7.2e-29 Score=234.98 Aligned_cols=283 Identities=18% Similarity=0.267 Sum_probs=239.3
Q ss_pred eeeccCcceeec---CCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 233 RIIDRHGSATLK---PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 233 ~~~~~~~~~~~s---pdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
+|...|-.++|+ |+|-+|+++++|+.-.+.+-.++.+ .-++.||+++||...++.+...-|+++.|-+-+
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-------igtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-------IGTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-------EEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 344555567776 6899999999999988887665554 246899999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
|||..+|..+..+ .|..
T Consensus 85 vw~a~tgdelhsf---------------------------------------------------------------~hkh 101 (334)
T KOG0278|consen 85 VWDAVTGDELHSF---------------------------------------------------------------EHKH 101 (334)
T ss_pred hhhhhhhhhhhhh---------------------------------------------------------------hhhh
Confidence 9999887644322 3788
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeE-EEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~-~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
.|..++|+.|. +|++|+.++.+||||++..+. ...+ +|.+.|..+.|.. .++.|++.+.|++||+||.+++..++.
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~s 180 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQS 180 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEE
Confidence 89999999998 999999999999999976543 3333 5999999999998 888899999999999999999999998
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
......|+++.++++|.+|.++ ..+.|.+||..+..++....+ ...|.+..++| +...+++|+.|..++
T Consensus 181 L~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~---------P~nV~SASL~P-~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 181 LEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM---------PCNVESASLHP-KKEFFVAGGEDFKVY 249 (334)
T ss_pred EecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC---------ccccccccccC-CCceEEecCcceEEE
Confidence 8899999999999999887664 467899999998887754332 35688899999 779999999999999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.||..+....-.. ..+|.++|.++.|+|||...++|++||+|+||.+..++
T Consensus 250 kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 250 KFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9998876544332 27899999999999999999999999999999988765
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=228.80 Aligned_cols=249 Identities=20% Similarity=0.264 Sum_probs=202.7
Q ss_pred eeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEE
Q 004410 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (755)
Q Consensus 232 ~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vW 311 (755)
.+|+..+++++|+|.|++||+|+.|.++.||.-... .+.+..+|.||+..|.|++|+++|+|||||+.|+.|.||
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-----efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-----EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIW 132 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCC-----ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence 356777889999999999999999999999985533 344567899999999999999999999999999999999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
.+..+... ..+..+++|...|
T Consensus 133 e~deddEf-----------------------------------------------------------ec~aVL~~HtqDV 153 (312)
T KOG0645|consen 133 EIDEDDEF-----------------------------------------------------------ECIAVLQEHTQDV 153 (312)
T ss_pred EecCCCcE-----------------------------------------------------------EEEeeeccccccc
Confidence 98755421 1134578899999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCC---CCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 392 LDLSWSKNG-FLLSSSADKTVRLWQVG---IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~Dg~V~iWdl~---s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
..+.|+|.. .|++++.|.+|++|.-. .-.|..++. |...|.+++|+| .+..|++++.|++|+||-+...- .
T Consensus 154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~~---~ 229 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTDL---S 229 (312)
T ss_pred cEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccCc---c
Confidence 999999987 99999999999999765 346777774 888999999999 99999999999999999866321 1
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
..|...+..+.|. ...|++++.|+.|++|.-........+.. +......|...|++++|+|...+.|++++.||.|+
T Consensus 230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l-~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~ 306 (312)
T KOG0645|consen 230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL-LAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVN 306 (312)
T ss_pred hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHH-HHhhhcccccccceEEEcCCCCCceeecCCCceEE
Confidence 2355778889997 45899999999999998764311111111 22234568889999999996689999999999999
Q ss_pred EEECC
Q 004410 547 VLCGE 551 (755)
Q Consensus 547 iwd~~ 551 (755)
+|.+.
T Consensus 307 ~W~l~ 311 (312)
T KOG0645|consen 307 FWELE 311 (312)
T ss_pred EEEec
Confidence 99753
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.8e-28 Score=242.78 Aligned_cols=264 Identities=25% Similarity=0.354 Sum_probs=219.7
Q ss_pred cccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 274 ~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
.+..|.+..|.+.||-+.||++|+|||||+.|.+..+|++.....+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~---------------------------------- 259 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF---------------------------------- 259 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce----------------------------------
Confidence 3455778999999999999999999999999999999997543211
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecC--Cc
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NY 430 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~--~~ 430 (755)
+..+++.+|..+|..+.|+||. +|++++.|..+.+||+.++.+...+.+. ..
T Consensus 260 -------------------------kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S 314 (519)
T KOG0293|consen 260 -------------------------KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFS 314 (519)
T ss_pred -------------------------eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCC
Confidence 2357788999999999999999 9999999999999999999999999754 88
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc-ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE-IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~-~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
+.+.+|.| |+..|++|+.|+.+..||+.....-.|.+... .|.+++.++||+++++.+.|..|++|+..+.....
T Consensus 315 ~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~--- 390 (519)
T KOG0293|consen 315 VSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG--- 390 (519)
T ss_pred cceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc---
Confidence 99999999 99999999999999999999887767776554 59999999999999999999999999988654331
Q ss_pred EEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec-CCCEEEEEeCCCc
Q 004410 510 ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS-DGKHVVSPSEDSN 588 (755)
Q Consensus 510 ~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-dg~~L~sgs~Dg~ 588 (755)
......+|++++++. +++++++.-.+..|++||+.+.....+........-+..-||.- +..++++|++|+.
T Consensus 391 ------lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k 463 (519)
T KOG0293|consen 391 ------LISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK 463 (519)
T ss_pred ------cccccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence 122356899999999 99999999999999999998755444442133344566677754 4589999999999
Q ss_pred EEEEEcCCCCcccCCCccc
Q 004410 589 IYIWNYSNQDKSSSRSKSI 607 (755)
Q Consensus 589 I~iWd~~~~~~~~~~~~~~ 607 (755)
||||+..+++.........
T Consensus 464 vyIWhr~sgkll~~LsGHs 482 (519)
T KOG0293|consen 464 VYIWHRISGKLLAVLSGHS 482 (519)
T ss_pred EEEEEccCCceeEeecCCc
Confidence 9999999998655544444
No 52
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=7.9e-27 Score=223.43 Aligned_cols=287 Identities=17% Similarity=0.245 Sum_probs=227.9
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+.+|.-.++.+.++.+|.+|.++++|.++.||-...+.+ .-++.||+++|||+..+-+.++|+||+.|.+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-------lGty~GHtGavW~~Did~~s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAK 77 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-------eeeecCCCceEEEEEecCCcceeeeccccceeE
Confidence 3566777788899999999999999999999997543332 246899999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+||+.+|+++..++ -..
T Consensus 78 LWDv~tGk~la~~k---------------------------------------------------------------~~~ 94 (327)
T KOG0643|consen 78 LWDVETGKQLATWK---------------------------------------------------------------TNS 94 (327)
T ss_pred EEEcCCCcEEEEee---------------------------------------------------------------cCC
Confidence 99999998765543 235
Q ss_pred CEEEEEEcCCCeEEEEe------CCCcEEEEeCC-------CCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004410 390 EVLDLSWSKNGFLLSSS------ADKTVRLWQVG-------IDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s------~Dg~V~iWdl~-------s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~i 455 (755)
+|..+.|+.+|.++..+ ..+.|.++|++ ..++...+ .+...++.+-|.| -+.+|++|..||.|.+
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~ 173 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISI 173 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEE
Confidence 68889999999333333 33679999987 44544444 5889999999999 9999999999999999
Q ss_pred EEcCCCeEE-E-eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 456 WEVRRCQVV-D-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 456 wdl~~~~~~-~-~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
||+++++.. . -..|...|+.+++++|..++++++.|.+-++||+.+..++.+.. ...+|++.+++| -.
T Consensus 174 ~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~---------te~PvN~aaisP-~~ 243 (327)
T KOG0643|consen 174 YDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT---------TERPVNTAAISP-LL 243 (327)
T ss_pred EEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee---------ecccccceeccc-cc
Confidence 999997544 3 46788899999999999999999999999999999988876543 356899999999 45
Q ss_pred CEEEEEECCCcEEEEECCcceeeE------------EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKF------------KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~------------~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
..++.|+.....-|--......+| .+...+|-++|++++|+|+|+..++|++||.|+|.-++..
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 555555443332222222222222 2234679999999999999999999999999999987654
No 53
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.9e-27 Score=265.29 Aligned_cols=319 Identities=20% Similarity=0.298 Sum_probs=239.8
Q ss_pred hcccccccccceeeeeccCcceeecCCCCeeEEee--CCCeEEEEECCCCccccc-----ccccceeeecccccEEEEEE
Q 004410 220 VKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELS-----SLYTGQEFLAHEGSILTMKF 292 (755)
Q Consensus 220 ~~~~w~~~~~~~~~~~~~~~~~~~spdg~~lasgs--~dg~V~Vw~~~~~~~~~~-----~~~~~~~l~~H~~~V~~l~f 292 (755)
.++.|+.+-. ..+.++.++|||..+|+|+ .|+.++||+...-..+.. -....-++..|.+.|.|+.|
T Consensus 4 ~kp~wv~H~~------~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~ 77 (942)
T KOG0973|consen 4 LKPTWVNHNE------KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF 77 (942)
T ss_pred ecccccccCC------eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE
Confidence 3455665543 3467799999999999999 899999998653221111 01122346689999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCc
Q 004410 293 SLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (755)
Q Consensus 293 spdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (755)
+|||+|||+|+.|+.|.||..... .....- ...+... .. .
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~f----------gs~g~~~------------------------~v-----E 117 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEI-GSGTVF----------GSTGGAK------------------------NV-----E 117 (942)
T ss_pred CCCCCeEeeccCcceEEEeeeccc-CCcccc----------ccccccc------------------------cc-----c
Confidence 999999999999999999987641 000000 0000000 00 0
Q ss_pred ceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 373 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
..+.+..+.+|.+.|.+++|+|++ +|++++.|++|.|||..+.++++++. |...|..+.|.| -|+||++-+.|
T Consensus 118 ----~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdD 192 (942)
T KOG0973|consen 118 ----SWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDD 192 (942)
T ss_pred ----eeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCC
Confidence 013467788999999999999999 99999999999999999999999885 999999999999 99999999999
Q ss_pred CcEEEEEcCCCeEEEec-------cCCcceEEEEEccCCCeEEEEeC----CCcEEEEECCCCeEeeeeeEEecccccCC
Q 004410 451 GKVRIWEVRRCQVVDYT-------DIREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKDNQLYQQNQICLQGKKKLP 519 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~-------~~~~~V~~v~~spdg~~la~gs~----dg~I~iwD~~~~~~~~~~~~~~~~~~~~~ 519 (755)
++|+||++.+-.+.+.. .....+..+.|+|||++|++... ...+.|.+-.+.+.-.. .-.|
T Consensus 193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~--------LvGH 264 (942)
T KOG0973|consen 193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKD--------LVGH 264 (942)
T ss_pred ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeee--------eecC
Confidence 99999998775554321 23345889999999999998543 23477777655543321 2346
Q ss_pred CCCeEEEEEcCC----C--------CC----EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE
Q 004410 520 GKRITGFQFSPS----D--------PS----KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 520 ~~~I~~v~fsp~----d--------~~----~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
.++++++.|+|. . +. .+++|+.|+.|-||........+... .-....|.+++|+|||..|+.+
T Consensus 265 ~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~-~lf~~SI~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 265 SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH-NLFNKSIVDMSWSPDGFSLFAC 343 (942)
T ss_pred CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh-hhhcCceeeeeEcCCCCeEEEE
Confidence 789999999982 1 11 67899999999999987665555542 2245689999999999999999
Q ss_pred eCCCcEEEEEcCCCC
Q 004410 584 SEDSNIYIWNYSNQD 598 (755)
Q Consensus 584 s~Dg~I~iWd~~~~~ 598 (755)
|.||+|.+..++..+
T Consensus 344 S~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 344 SLDGTVALIHFEEKE 358 (942)
T ss_pred ecCCeEEEEEcchHH
Confidence 999999999998754
No 54
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.4e-28 Score=251.81 Aligned_cols=385 Identities=15% Similarity=0.201 Sum_probs=287.2
Q ss_pred CCCceEEEccCCCchhhhhhcccccCCCccccccccccCCCCCCccccCCCCcCcchhhhhhhhhhhhcccccccccc--
Q 004410 153 GKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGA-- 230 (755)
Q Consensus 153 d~g~~~~~~~~~~~~~~~~~~lr~v~~~~~~~~e~f~~~~~~sp~~~~~l~r~~~~~~~~~~~~~k~~~~~w~~~~~~-- 230 (755)
|+...|++++|.. ||.|+.+...-.|+|++|++ +|+.+..|+...++.+....++...+.-+++|.+
T Consensus 324 ~R~l~F~P~ky~s--------LR~VPaY~r~irErFeRcLD---LYL~PR~rK~rlniDpe~LiPkLPsp~dLrPFPt~~ 392 (733)
T KOG0650|consen 324 DRKLNFIPQKYKS--------LRKVPAYERSIRERFERCLD---LYLAPRVRKMRLNIDPESLIPKLPSPKDLRPFPTRC 392 (733)
T ss_pred ccccccccccchh--------hhcchhHHHHHHHHHHHhHH---hhhCcccccceecCCHHHhcccCCChhhcCCCccee
Confidence 5667899999998 99999999999999999999 5788889999999988888888888888888876
Q ss_pred ---eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCC--EEEEEcCC
Q 004410 231 ---MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGED 305 (755)
Q Consensus 231 ---~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~--~LaSgs~D 305 (755)
+.+|.+.+.+++..|.|.+||+|+.||+|+||.+.++.... +++ -.+.|.||+|+|.+. .||++-.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr-------~~~-~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR-------TVQ-FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE-------EEe-ecceeEEEEecCCCCceeEEEEecC
Confidence 67888999999999999999999999999999987665422 111 345899999999764 56665544
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
. +.|-+..-|..+....... +.+... .....+..++.|.....+...+-++...
T Consensus 465 ~-~~ivnp~~G~~~e~~~t~e-----ll~~~~--------------------~~~~p~~~~~~W~~~~~~e~~~~v~~~I 518 (733)
T KOG0650|consen 465 C-VLIVNPIFGDRLEVGPTKE-----LLASAP--------------------NESEPDAAVVTWSRASLDELEKGVCIVI 518 (733)
T ss_pred c-eEEeCccccchhhhcchhh-----hhhcCC--------------------CccCCcccceeechhhhhhhccceEEEE
Confidence 4 6665544442221100000 000000 0011222444454443333334466677
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~D---g~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.|...|..+.|+..| +|++..-+ ..|.|.++.......-| ...+.|.++.|+| ...+|++++ ...|+|||+..
T Consensus 519 ~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~k 596 (733)
T KOG0650|consen 519 KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSK 596 (733)
T ss_pred ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhH
Confidence 899999999999999 88887653 67999999887777666 3678899999999 666666665 46899999998
Q ss_pred CeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 461 CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 461 ~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
+.++ .+......|..++.+|.|..|++|+.|+.+..||+.-..... .....|...++.++|++ .-.++++|
T Consensus 597 qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy-------k~lr~H~~avr~Va~H~-ryPLfas~ 668 (733)
T KOG0650|consen 597 QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY-------KTLRLHEKAVRSVAFHK-RYPLFASG 668 (733)
T ss_pred HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh-------HHhhhhhhhhhhhhhcc-ccceeeee
Confidence 7766 455566789999999999999999999999999998653321 12345778999999999 88899999
Q ss_pred ECCCcEEEEECCc---c-----e---eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 004410 540 SADSLVRVLCGEN---V-----V---GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 540 s~Dg~I~iwd~~~---~-----~---~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
+.||++.|+...- . . ..+.+........|..+.|+|...+|++++.||+|++|
T Consensus 669 sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 669 SDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9999999986331 1 1 11122112223458899999999999999999999998
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-26 Score=238.74 Aligned_cols=283 Identities=21% Similarity=0.310 Sum_probs=232.3
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
.+.+.+++|+|...+=.+....-++.||+..... ..+++.-.+..|.++.|..||++||.|...|.|+|+|..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~-------~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS-------VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhh-------hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 4667889999987753333444578999865432 222344466789999999999999999999999999954
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
+.. .+..+.+|+.+|..+
T Consensus 99 ~r~--------------------------------------------------------------iLR~~~ah~apv~~~ 116 (487)
T KOG0310|consen 99 SRV--------------------------------------------------------------ILRQLYAHQAPVHVT 116 (487)
T ss_pred cHH--------------------------------------------------------------HHHHHhhccCceeEE
Confidence 421 256678999999999
Q ss_pred EEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC-eEEEeccCC
Q 004410 395 SWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDIR 470 (755)
Q Consensus 395 ~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-~~~~~~~~~ 470 (755)
.|+|.+ .|++|+.|+.+++||+.+......+ .|.++|.|.+|+|.++.++++|++||+|++||++.. ..+....|.
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg 196 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHG 196 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCC
Confidence 999977 8899999999999999998864444 599999999999988889999999999999999987 666778899
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
.+|..+.+-|.|..|++++ ...|++||+-+|.... .....|.+.|||+.+.. ++..|++++-|+.|++||.
T Consensus 197 ~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll-------~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 197 CPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLL-------TSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred CceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceeh-------hhhhcccceEEEEEeec-CCceEeecccccceEEEEc
Confidence 9999999999999999977 4579999999554332 12334889999999998 8899999999999999997
Q ss_pred CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 551 ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 551 ~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+...... ....++|.+++.+|+++.++.|-.||.+.+=+....+
T Consensus 268 t~~Kvv~s---~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 268 TNYKVVHS---WKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred cceEEEEe---eecccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 76555544 4577899999999999999999999998887554444
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=9.5e-26 Score=234.18 Aligned_cols=247 Identities=28% Similarity=0.523 Sum_probs=209.9
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+++.+|.+.|.+++|+|++++|++++.||.|++|++.+++.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--------------------------------------- 43 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--------------------------------------- 43 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------------------------
Confidence 45678999999999999999999999999999999876531
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~ 435 (755)
...+..|...+..+.|++++ .|++++.|+.|++||+.+++.+..+. |...|.++.
T Consensus 44 -----------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~ 100 (289)
T cd00200 44 -----------------------LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100 (289)
T ss_pred -----------------------EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEE
Confidence 23455688888999999999 99999999999999999877777664 778999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
|+| ++.++++++.|+.|++||+.+++.. .+..+...+.+++|+|++.++++++.+|.|++||+++++......
T Consensus 101 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~----- 174 (289)
T cd00200 101 FSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT----- 174 (289)
T ss_pred EcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-----
Confidence 999 7888888888999999999977666 455688899999999999999988889999999999776654322
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.+...|.++.|+| ++..+++++.++.|++||.......... ..|...+.+++|++++.++++++.||.|++|++
T Consensus 175 ---~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 175 ---GHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTL--RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred ---cCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecch--hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence 3556899999999 7788999999999999998864433332 367779999999999999999988999999999
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.+++
T Consensus 249 ~~~~ 252 (289)
T cd00200 249 RTGE 252 (289)
T ss_pred CCce
Confidence 8765
No 57
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=8e-28 Score=235.03 Aligned_cols=258 Identities=23% Similarity=0.392 Sum_probs=221.2
Q ss_pred cccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
+.+..+.|..|||||+||++|+.||.|.||+..+|+....+....
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA----------------------------------- 255 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA----------------------------------- 255 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh-----------------------------------
Confidence 556778899999999999999999999999999987654433211
Q ss_pred CCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEee
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNP 438 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp 438 (755)
-..|.-|..+|.|+.|+.|. .|++|+.||.|++|.+.+|+|++.|. |...|+|+.|+.
T Consensus 256 -------------------qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr 316 (508)
T KOG0275|consen 256 -------------------QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR 316 (508)
T ss_pred -------------------hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence 12345578899999999999 99999999999999999999999995 999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
|+..+++++.|.++||.-+.+++++ .+.+|...|+.+.|.+||..+++++.||+|++|+..+..+..+++. .
T Consensus 317 -D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~------~ 389 (508)
T KOG0275|consen 317 -DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP------L 389 (508)
T ss_pred -CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC------C
Confidence 9999999999999999999999988 6889999999999999999999999999999999999988765442 2
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
.....|+.+-..|.++..++++...++|.|.++......-........+...+++.+|.|.++.+.++|+.+|.|.+.+|
T Consensus 390 ~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 390 GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 24567899999998899999999999999998775333222222345567788899999999999999999999999998
Q ss_pred Ccc
Q 004410 598 DKS 600 (755)
Q Consensus 598 ~~~ 600 (755)
+-+
T Consensus 470 ~LE 472 (508)
T KOG0275|consen 470 KLE 472 (508)
T ss_pred cee
Confidence 733
No 58
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=4.3e-27 Score=229.07 Aligned_cols=301 Identities=15% Similarity=0.241 Sum_probs=236.0
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCC-----ccc------ccccccceeeecccccEEEEEEecCCC
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQ-----SRE------LSSLYTGQEFLAHEGSILTMKFSLDGQ 297 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~-----~~~------~~~~~~~~~l~~H~~~V~~l~fspdg~ 297 (755)
..+..|+..+.+.+|+|||.++|+|+.|-.|+|.|+... .++ ....+.+++|..|.+.|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 346677888889999999999999999999999998621 111 112245678889999999999999999
Q ss_pred EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceecc
Q 004410 298 YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (755)
Q Consensus 298 ~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (755)
.|++|+.|++|+++|+......+.+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~------------------------------------------------------- 210 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAF------------------------------------------------------- 210 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHH-------------------------------------------------------
Confidence 9999999999999998654321111
Q ss_pred CccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCc
Q 004410 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGK 452 (755)
Q Consensus 378 ~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~ 452 (755)
.......+|.++.|+|.| +|+.|....++++||+.+.+|...- +|.+.|+++.+++ .+++.++|+.||.
T Consensus 211 -----K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~ 284 (430)
T KOG0640|consen 211 -----KVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGA 284 (430)
T ss_pred -----HHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCc
Confidence 112245689999999999 9999999999999999999987655 4999999999999 9999999999999
Q ss_pred EEEEEcCCCeEEEec--c-CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 453 VRIWEVRRCQVVDYT--D-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 453 V~iwdl~~~~~~~~~--~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
|+|||--+++++... . ....|.+..|..+|++|++.+.|..+++|.+.+++.+....-.- .......-+...|+
T Consensus 285 IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg---~tgrq~~rtqAvFN 361 (430)
T KOG0640|consen 285 IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG---TTGRQKHRTQAVFN 361 (430)
T ss_pred EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC---cccchhhhhhhhhc
Confidence 999999988888432 2 34579999999999999999999999999999999876533210 00111222344565
Q ss_pred CCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
......|.---..+.+.-||.++........ .+|.+.+..+.-||.+.-+++++.|-.+++|--
T Consensus 362 htEdyVl~pDEas~slcsWdaRtadr~~l~s-lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 362 HTEDYVLFPDEASNSLCSWDARTADRVALLS-LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CccceEEccccccCceeeccccchhhhhhcc-cCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 5233333334456778889988765444332 789999999999999999999999999999964
No 59
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4.3e-27 Score=242.97 Aligned_cols=307 Identities=16% Similarity=0.199 Sum_probs=236.3
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
+-..+.+|...|.++++.|.|-.|++|+-|.+|++||+......+..+...+....| .|.+++|++.|..|++.+...
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeEEEEecCc
Confidence 334566677788899999999999999999999999998776555555444444444 699999999999888888888
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
..+|+|-...+...... .+.. -.-+....|
T Consensus 237 qakl~DRdG~~~~e~~K-GDQY-------------------------------------------------I~Dm~nTKG 266 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSK-GDQY-------------------------------------------------IRDMYNTKG 266 (641)
T ss_pred ceeEEccCCceeeeeec-cchh-------------------------------------------------hhhhhccCC
Confidence 99999954433222111 0000 011334579
Q ss_pred CCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-eEEEEEe------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 387 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~-~~~~~~~------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
|...++|.+|+|.. .+++++.||++||||+... +.+.++. ..-.++.++|+| ++.+|++|..||.|.+|+
T Consensus 267 Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 267 HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWD 345 (641)
T ss_pred ceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeee
Confidence 99999999999987 9999999999999998754 3444553 345689999999 999999999999999999
Q ss_pred cCCCeEE----EeccCCc--ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 458 VRRCQVV----DYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 458 l~~~~~~----~~~~~~~--~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
.....+. ....|.. .|++|.|++||++|++-+.|+++++||++..+........+. ....-+.++|+|
T Consensus 346 ~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-----t~~~~tdc~FSP- 419 (641)
T KOG0772|consen 346 KGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-----TPFPGTDCCFSP- 419 (641)
T ss_pred cCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC-----ccCCCCccccCC-
Confidence 8654321 2334555 799999999999999999999999999997654332221111 234567899999
Q ss_pred CCCEEEEEEC------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 532 DPSKVIVTSA------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 532 d~~~l~s~s~------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+.++|++|.. .+.+.+||..+....++. .-....|..+.|+|.-+.|+.|+.||.++||==
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki--~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI--DISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEe--cCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 8899998854 578999998887777776 334778999999999999999999999998743
No 60
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.9e-28 Score=238.35 Aligned_cols=293 Identities=19% Similarity=0.316 Sum_probs=237.1
Q ss_pred cccccc-cceeeeeccCcceeecCCC-CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEE
Q 004410 223 GWLKKL-GAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA 300 (755)
Q Consensus 223 ~w~~~~-~~~~~~~~~~~~~~~spdg-~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~La 300 (755)
-+-++| ..+.+|.+.|.+++=+|.. ..+|+|+.||.|+||++.. ..+..++.+|.|.|..|++.. ..++
T Consensus 53 ~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-------R~~~~~f~AH~G~V~Gi~v~~--~~~~ 123 (433)
T KOG0268|consen 53 VFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-------RECIRTFKAHEGLVRGICVTQ--TSFF 123 (433)
T ss_pred HhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhh-------hhhhheeecccCceeeEEecc--cceE
Confidence 344443 5689999999999999998 7899999999999999654 334567899999999999986 6789
Q ss_pred EEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
|+|.|.+|+.|.+... +
T Consensus 124 tvgdDKtvK~wk~~~~---------------------------------------------------------------p 140 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGP---------------------------------------------------------------P 140 (433)
T ss_pred EecCCcceeeeeccCC---------------------------------------------------------------c
Confidence 9999999999987431 1
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
++++.+ .+.++++.-+..+ .++|++.+ |.|||.....++..+. ..+.|.++.|+|....+|++|..|+.|.|||+
T Consensus 141 ~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~ 217 (433)
T KOG0268|consen 141 LHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL 217 (433)
T ss_pred ceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence 222222 3445566655545 78888754 8999999999998886 67889999999988889999999999999999
Q ss_pred CCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 459 ~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
+....+........-..|+|+|.+-.+++|..|..++.||++...... .....|...|.++.|+| .|..+++
T Consensus 218 R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~-------~v~~dhvsAV~dVdfsp-tG~Efvs 289 (433)
T KOG0268|consen 218 RQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL-------NVHKDHVSAVMDVDFSP-TGQEFVS 289 (433)
T ss_pred ccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccc-------hhhcccceeEEEeccCC-Ccchhcc
Confidence 999988766677778899999998899999999999999998754321 22456788999999999 8999999
Q ss_pred EECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 539 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
|+.|.+|+||........-... ..--..|.++.||.|.+||++||+|++|++|.-...++
T Consensus 290 gsyDksIRIf~~~~~~SRdiYh-tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHGHSRDIYH-TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred ccccceEEEeecCCCcchhhhh-HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 9999999999977643322221 12235789999999999999999999999999876653
No 61
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-26 Score=243.29 Aligned_cols=235 Identities=21% Similarity=0.305 Sum_probs=205.3
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
-++++..|-+-.+++++|+.|..|+||++++..+ .+++.+|.+-|.|++.+|...+++|++.|-+|++||++.
T Consensus 56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek-------V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK-------VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred cchhhheeeeccceEEEecCCceEEEEeccccee-------eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence 4567788999999999999999999999887654 356999999999999999999999999999999999865
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
.= ...++|.||..-|.+++
T Consensus 129 ~w-------------------------------------------------------------a~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 129 EW-------------------------------------------------------------ACEQTFEGHEHYVMQVA 147 (794)
T ss_pred ce-------------------------------------------------------------eeeeEEcCcceEEEEEE
Confidence 41 22567899999999999
Q ss_pred EcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCCeEE-EeccCC
Q 004410 396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIR 470 (755)
Q Consensus 396 ~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~ 470 (755)
|+|.. .+++++-|++|++|.+.+..+..++ +|...|+|+.+-+. +..+|++|+.|.+|+|||..+..++ ++.+|.
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt 227 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT 227 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc
Confidence 99976 9999999999999999999998888 49999999999872 2349999999999999999999988 578899
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
..|..++|+|.-..|++|+.||+++||+..+-++.... .....++.+++-.+ +.+.+++|...|.|.|
T Consensus 228 ~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL--------n~gleRvW~I~~~k-~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 228 NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL--------NYGLERVWCIAAHK-GDGKIAVGFDEGSVTV 295 (794)
T ss_pred ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh--------hcCCceEEEEeecC-CCCeEEEeccCCcEEE
Confidence 99999999999999999999999999999887765432 23457899999998 6777888888887654
No 62
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=3.2e-26 Score=246.02 Aligned_cols=283 Identities=18% Similarity=0.278 Sum_probs=234.9
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~v 310 (755)
+.+|+..|.+++++.+...+++|+. +.++||+..+.. +.+++. .+-|.+..|-|.++++++|...|.+.|
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~k-------ciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLK-------CIRTIT--CGYILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred eccchhheeEEEeecCceeeeecCC-CcEEEEEccCcc-------eeEEec--cccEEEEEecCCCceEEEeccCCceEE
Confidence 4567777778888888777777654 468888865322 233332 236778888888888888888888888
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
+|+.+... +.+...|.+.
T Consensus 439 fdlaS~~l--------------------------------------------------------------~Eti~AHdga 456 (888)
T KOG0306|consen 439 FDLASASL--------------------------------------------------------------VETIRAHDGA 456 (888)
T ss_pred EEeehhhh--------------------------------------------------------------hhhhhccccc
Confidence 88765542 3345689999
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCC-----CeE--------EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGI-----DRC--------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-----~~~--------~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
|+.++.+||+ .+++++.|++|++||..- +.. .+++.....|.|+.++| |+++|+++-.|.+|+||
T Consensus 457 IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 457 IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVY 535 (888)
T ss_pred eeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEE
Confidence 9999999999 999999999999998631 111 13344778899999999 99999999999999999
Q ss_pred EcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 457 EVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 457 dl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
-+.+-+.. .+.+|.-+|.|+..+||++.+++|+.|.+|++|-+.-|.+... ...|...|.+++|.| ...+
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS--------~fAHdDSvm~V~F~P-~~~~ 606 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS--------FFAHDDSVMSVQFLP-KTHL 606 (888)
T ss_pred EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh--------hhcccCceeEEEEcc-ccee
Confidence 99997765 8999999999999999999999999999999999998876532 345788999999999 8899
Q ss_pred EEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 536 VIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+.+++.|+.|+-||+......... .+|...|++++.+|+|.|++++|.|.+|++|.-...
T Consensus 607 FFt~gKD~kvKqWDg~kFe~iq~L--~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 607 FFTCGKDGKVKQWDGEKFEEIQKL--DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred EEEecCcceEEeechhhhhhheee--ccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 999999999999999887666665 789999999999999999999999999999997663
No 63
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.4e-26 Score=220.87 Aligned_cols=274 Identities=15% Similarity=0.236 Sum_probs=219.8
Q ss_pred eccCcceeecCC-CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 235 IDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 235 ~~~~~~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
.|.+.+++|||. ..++++|+.|++||+|++..... ...+....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 467888999994 45666899999999999875422 122445679999999999999999999999999999999
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.+++ +..+..|.++|..
T Consensus 102 ~S~Q---------------------------------------------------------------~~~v~~Hd~pvkt 118 (347)
T KOG0647|consen 102 ASGQ---------------------------------------------------------------VSQVAAHDAPVKT 118 (347)
T ss_pred cCCC---------------------------------------------------------------eeeeeecccceeE
Confidence 8885 2345679999999
Q ss_pred EEEcCCC---eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE---ec
Q 004410 394 LSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YT 467 (755)
Q Consensus 394 l~~s~~~---~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---~~ 467 (755)
+.|-+.. .|++|+.|++|+.||.+....+.++.....++++..- ..+++.+..+..|.+|+++...... ..
T Consensus 119 ~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~S 195 (347)
T KOG0647|consen 119 CHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIES 195 (347)
T ss_pred EEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcC
Confidence 9998765 7999999999999999999999999999999999863 4788999999999999998765442 23
Q ss_pred cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc----C-CCCCeEEEEEcCCCCCEEEEEECC
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK----L-PGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~----~-~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
..+-.+.+|+..+|....+.|+.+|.+.|..+..+.....+. +..+.. . .-..|++++|+| ....|++.+.|
T Consensus 196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt--FkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsD 272 (347)
T KOG0647|consen 196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT--FKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSD 272 (347)
T ss_pred cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee--EEEeccCCCCCCceEEecceEeec-ccceEEEecCC
Confidence 456679999999999999999999999999998864322222 222221 1 124578899999 77889999999
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
|++.+||.......... ..|..+|++.+|+.+|.+++-+.
T Consensus 273 Gtf~FWDkdar~kLk~s--~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 273 GTFSFWDKDARTKLKTS--ETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceEEEecchhhhhhhcc--CcCCCccceeEecCCCCEEEEEe
Confidence 99999997654333332 56889999999999999887553
No 64
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.7e-26 Score=217.55 Aligned_cols=269 Identities=21% Similarity=0.337 Sum_probs=232.6
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+++++|.+.|.+++|+-+|..||+|+.|+++.||++.......
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~------------------------------------- 56 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK------------------------------------- 56 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-------------------------------------
Confidence 5678999999999999999999999999999999987653221
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~ 435 (755)
-....+|.+.|-.++|+|.. .|++++.|++|++||+++++++........-.-+.
T Consensus 57 -----------------------~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~ 113 (313)
T KOG1407|consen 57 -----------------------ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINIT 113 (313)
T ss_pred -----------------------hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEE
Confidence 12346899999999999876 99999999999999999999999998777777789
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
|+| ++.+++.++.|..|.+.|.++.+.+........+.-++|+-++..++.....|.|.|......+.++.
T Consensus 114 wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~s-------- 184 (313)
T KOG1407|consen 114 WSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQS-------- 184 (313)
T ss_pred EcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccc--------
Confidence 999 99999999999999999999999998777888899999998888888888889999998887666543
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.+.|.....++.|+| +++++++|+.|..+.+||...+.+.... .++.-+|..++|+.||++||+|++|-.|-|=++.
T Consensus 185 i~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~i--sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCI--SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred cccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheee--ccccCceEEEEeccCcceeeccCccceEEeEecc
Confidence 445778899999999 9999999999999999999998888777 7788999999999999999999999999999999
Q ss_pred CCCcccCCCccccceeeeecCCeEEEEcCCCCC
Q 004410 596 NQDKSSSRSKSIWSCESFLSHNVSVAIPWVGLE 628 (755)
Q Consensus 596 ~~~~~~~~~~~~~~~~~f~~~~~~va~~w~g~~ 628 (755)
+|.+.. ...+...+..++|.+..
T Consensus 262 tGd~~~----------eI~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 262 TGDRVW----------EIPCEGPTFTVAWHPKR 284 (313)
T ss_pred cCCeEE----------EeeccCCceeEEecCCC
Confidence 998332 22344566677886653
No 65
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.3e-25 Score=247.73 Aligned_cols=293 Identities=17% Similarity=0.160 Sum_probs=209.1
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCccccccc------ccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEE
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSL------YTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRV 310 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~------~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~v 310 (755)
+.....++++..+++++.+.....|+...+...+..- .....+.+|.+.|++++|+| ++++||+|+.|++|+|
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 3345566676666666666666677654332211100 01134789999999999999 8899999999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.++..... ...++..+.+|...
T Consensus 103 Wdi~~~~~~~~-------------------------------------------------------~~~~l~~L~gH~~~ 127 (493)
T PTZ00421 103 WGIPEEGLTQN-------------------------------------------------------ISDPIVHLQGHTKK 127 (493)
T ss_pred EecCCCccccc-------------------------------------------------------cCcceEEecCCCCc
Confidence 99875431100 01345678899999
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Ee
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~ 466 (755)
|.+++|+|++ +|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|++|+|||+++++.+ .+
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 9999999975 89999999999999999999888885 899999999999 9999999999999999999998876 45
Q ss_pred ccCCcc-eEEEEEccCCCeEEEEe----CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-
Q 004410 467 TDIREI-VSAVCYCPDGKGGIVGT----MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS- 540 (755)
Q Consensus 467 ~~~~~~-V~~v~~spdg~~la~gs----~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s- 540 (755)
..|... +..+.|.+++..|++++ .|+.|++||+++....... . .......+....|++ ++.+|++++
T Consensus 207 ~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~----~--~~d~~~~~~~~~~d~-d~~~L~lggk 279 (493)
T PTZ00421 207 EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST----V--DLDQSSALFIPFFDE-DTNLLYIGSK 279 (493)
T ss_pred ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE----e--ccCCCCceEEEEEcC-CCCEEEEEEe
Confidence 556543 45678999887777654 4789999999875432110 0 001223455667888 788888877
Q ss_pred CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 541 ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
.|+.|++||+.+....+... ..+..++..++|.|.-..=+- .--..++|.+..
T Consensus 280 gDg~Iriwdl~~~~~~~~~~-~~s~~~~~g~~~~pk~~~dv~--~~Ei~r~~~l~~ 332 (493)
T PTZ00421 280 GEGNIRCFELMNERLTFCSS-YSSVEPHKGLCMMPKWSLDTR--KCEIARFYALTY 332 (493)
T ss_pred CCCeEEEEEeeCCceEEEee-ccCCCCCcceEeccccccccc--ceeeeEEEEecC
Confidence 59999999998765444322 345567788888885322111 112346676653
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.4e-25 Score=204.67 Aligned_cols=292 Identities=19% Similarity=0.286 Sum_probs=229.7
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCccc-----ccccc---cceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-----LSSLY---TGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~-----~~~~~---~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
..+.+++|+|.|.+.|.|+...+.+|..+...... ....+ ..+.-+.|.+.|.|.+|+|+|++||||+.|++
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 45778999999999999999999999876432211 11111 12334579999999999999999999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|++.-.+...+.. ..+-.+|.-|
T Consensus 113 ik~l~fn~dt~~~---------------------------------------------------------~g~dle~nmh 135 (350)
T KOG0641|consen 113 IKVLPFNADTCNA---------------------------------------------------------TGHDLEFNMH 135 (350)
T ss_pred EEEEecccccccc---------------------------------------------------------cCcceeeeec
Confidence 9997664432110 0123456779
Q ss_pred CCCEEEEEEcCC---C--eEEEEe-CCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 388 SSEVLDLSWSKN---G--FLLSSS-ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 388 ~~~V~~l~~s~~---~--~L~s~s-~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.+.|.+++|..+ + .|++++ .|..|++-|..+++....+ +|.+-|.++-- .++-+|++|+.|.+||+||++-
T Consensus 136 dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys--wn~~m~~sgsqdktirfwdlrv 213 (350)
T KOG0641|consen 136 DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS--WNGAMFASGSQDKTIRFWDLRV 213 (350)
T ss_pred CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE--ecCcEEEccCCCceEEEEeeec
Confidence 999999999753 2 556544 5778888899999998888 49998887742 2678999999999999999998
Q ss_pred CeEEEecc-----C---CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 461 CQVVDYTD-----I---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 461 ~~~~~~~~-----~---~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
..++...+ . ...|.+++..|.|++|++|..|..+.+||++.++.++. ...|...|.++.|+| .
T Consensus 214 ~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~--------f~phsadir~vrfsp-~ 284 (350)
T KOG0641|consen 214 NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR--------FHPHSADIRCVRFSP-G 284 (350)
T ss_pred cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee--------eCCCccceeEEEeCC-C
Confidence 87774322 1 25799999999999999999999999999999998764 445788999999999 8
Q ss_pred CCEEEEEECCCcEEEEECCcc-eeeE-EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 533 PSKVIVTSADSLVRVLCGENV-VGKF-KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~-~~~~-~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
..++++++.|..|++-|+... ...+ ......|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus 285 a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 285 AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999999997642 1111 22225688888999999999999999999999999875
No 67
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=1.2e-27 Score=235.98 Aligned_cols=231 Identities=21% Similarity=0.339 Sum_probs=199.5
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
....|.|+.+ |...+++|..|.+|+|||..+-.+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c-------------------------------------------- 229 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLEC-------------------------------------------- 229 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHH--------------------------------------------
Confidence 3467999999 466799999999999999866543
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCC
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~ 441 (755)
+..+.||++.|.|+.|... .|++|+.|.+|++||++++++++++ .|...|..+.|+.
T Consensus 230 ------------------~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--- 287 (499)
T KOG0281|consen 230 ------------------LKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--- 287 (499)
T ss_pred ------------------HHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---
Confidence 3457899999999999754 8999999999999999999999988 5899999999964
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEE----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 442 NYFISGSIDGKVRIWEVRRCQVV----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 442 ~~l~sgs~Dg~V~iwdl~~~~~~----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
.++++++.|.++.+||+....-+ .+.+|...|..+.| +.+++++++.|.+|++|++.++..+.. ..
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRt--------l~ 357 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRT--------LN 357 (499)
T ss_pred CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehh--------hh
Confidence 89999999999999999876533 36789999999999 567999999999999999999988764 33
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
.|...|.|+++ .++++++|+.|.+|++||+..+...... .+|..-|.++.| |.+.|++|+.||+|+|||+..+
T Consensus 358 gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvL--eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 358 GHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVL--EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred cccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHH--hchHHhhhheee--cCceeeeccccceEEEEecccc
Confidence 46678888888 5699999999999999999987665544 679899999998 5688999999999999999987
Q ss_pred C
Q 004410 598 D 598 (755)
Q Consensus 598 ~ 598 (755)
.
T Consensus 431 l 431 (499)
T KOG0281|consen 431 L 431 (499)
T ss_pred c
Confidence 6
No 68
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-26 Score=219.87 Aligned_cols=281 Identities=22% Similarity=0.347 Sum_probs=223.5
Q ss_pred ceeecCCCC-eeE--Ee-----eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCCcEEE
Q 004410 240 SATLKPGDH-ELT--LG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRV 310 (755)
Q Consensus 240 ~~~~spdg~-~la--sg-----s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~v 310 (755)
++.|||--. .|| ++ ...|++.|.+...... + ...+.+ .-.+.+..++|+++ .+.+++++.||+++|
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g-i---~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl 87 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG-I---QECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRL 87 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCC-e---EEEEee-ecccceeEeeecCCCcceEEEEecCceEEE
Confidence 478888532 333 22 2478899988752111 1 111222 23578999999995 468889999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+... .+|++.++.|..+
T Consensus 88 ~d~~~~-------------------------------------------------------------s~Pi~~~kEH~~E 106 (311)
T KOG0277|consen 88 FDLTMP-------------------------------------------------------------SKPIHKFKEHKRE 106 (311)
T ss_pred eccCCC-------------------------------------------------------------CcchhHHHhhhhh
Confidence 995321 3578889999999
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-CeEEEe
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVDY 466 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~~~~~~ 466 (755)
|.++.|++.. .+++++.|++|++|+....+.+.+|. |..-|...+|+|..+++|++++.|+++++||++. ++.+.+
T Consensus 107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i 186 (311)
T KOG0277|consen 107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI 186 (311)
T ss_pred eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE
Confidence 9999999865 88888999999999999999999994 9999999999999999999999999999999985 455567
Q ss_pred ccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 467 TDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 467 ~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
..|...|.++.|+. +...|++|+.|+.|++||++.-+... .....|+-.|..+.|+|.....|++++.|-++
T Consensus 187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl-------~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL-------FELNGHGLAVRKVKFSPHHASLLASASYDMTV 259 (311)
T ss_pred EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc-------eeecCCceEEEEEecCcchhhHhhhccccceE
Confidence 78888999999998 67788999999999999999765321 11345778999999999888999999999999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEec-CCCEEEEEeCCCcEEEEEc
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTS-DGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-dg~~L~sgs~Dg~I~iWd~ 594 (755)
+|||......... ....|..-+..+.|++ ++.++|+++.|+.++||+-
T Consensus 260 riw~~~~~ds~~e-~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 260 RIWDPERQDSAIE-TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred Eecccccchhhhh-hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999764322221 1245888888999987 5779999999999999983
No 69
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-26 Score=251.18 Aligned_cols=255 Identities=16% Similarity=0.297 Sum_probs=220.5
Q ss_pred ecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
......|..++|+|...+++++-..|+|++||..-+.+
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl------------------------------------------ 43 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL------------------------------------------ 43 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhH------------------------------------------
Confidence 34556789999999999999999999999999865543
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEee
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNP 438 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp 438 (755)
+..|..|.++|..++|+|++ .+++|+.|-+|++|+..+.+|+.++ +|-++|..+.|++
T Consensus 44 --------------------i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh 103 (1202)
T KOG0292|consen 44 --------------------IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH 103 (1202)
T ss_pred --------------------HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC
Confidence 56678899999999999999 9999999999999999999999887 6999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee--------
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ-------- 509 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~-------- 509 (755)
.-.+++++|.|.+|+||+..++.++ .+.+|...|.|..|+|....+++++-|.+|+|||+..-+......
T Consensus 104 -eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 104 -EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred -CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 8999999999999999999999988 688999999999999999999999999999999997533221110
Q ss_pred -------------EEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecC
Q 004410 510 -------------ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 510 -------------~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspd 576 (755)
.........|...|+-++|+| .-.++++|+.|..|++|.......--.-...+|...|.++-|+|.
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH 261 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCc
Confidence 111122345788999999999 778999999999999999887554444444789999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCc
Q 004410 577 GKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 577 g~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
..+|++.|+|++|+|||+.....
T Consensus 262 q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred cceeEecCCCccEEEEecccccc
Confidence 99999999999999999987653
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-25 Score=240.06 Aligned_cols=273 Identities=21% Similarity=0.361 Sum_probs=223.1
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
+.|+ ..+.||+|.. ..|++|+...... . +...-+...|+++.|+++|.+||+|..+|.|.|||+.+.+.+
T Consensus 183 ldWs-s~n~laValg-~~vylW~~~s~~v--~-----~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~- 252 (484)
T KOG0305|consen 183 LDWS-SANVLAVALG-QSVYLWSASSGSV--T-----ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT- 252 (484)
T ss_pred hhcc-cCCeEEEEec-ceEEEEecCCCce--E-----EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc-
Confidence 6788 4455666544 4699999765541 1 112223789999999999999999999999999998776533
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC-CCCCEEEEEEcCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKN 399 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~l~~s~~ 399 (755)
..+.+ |...|-+++|. .
T Consensus 253 -------------------------------------------------------------~~~~~~h~~rvg~laW~-~ 270 (484)
T KOG0305|consen 253 -------------------------------------------------------------RTLRGSHASRVGSLAWN-S 270 (484)
T ss_pred -------------------------------------------------------------ccccCCcCceeEEEecc-C
Confidence 33445 89999999999 3
Q ss_pred CeEEEEeCCCcEEEEeCCCCeEEEE-E-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE-EEeccCCcceEEE
Q 004410 400 GFLLSSSADKTVRLWQVGIDRCLRV-F-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-VDYTDIREIVSAV 476 (755)
Q Consensus 400 ~~L~s~s~Dg~V~iWdl~s~~~~~~-~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~-~~~~~~~~~V~~v 476 (755)
..+.+|+.|+.|..+|++..+.... + .|...|..+.|++ ++++|++|+.|+.+.|||....+. ..+..|...|.++
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~ 349 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL 349 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence 3899999999999999998766554 4 4999999999999 999999999999999999966544 4788999999999
Q ss_pred EEcc-CCCeEEEE--eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE--ECCCcEEEEECC
Q 004410 477 CYCP-DGKGGIVG--TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT--SADSLVRVLCGE 551 (755)
Q Consensus 477 ~~sp-dg~~la~g--s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~--s~Dg~I~iwd~~ 551 (755)
+|+| ....||+| +.|+.|++||+.++..+.. ...+..|..+.|++ ..+.|+++ ..++.|.||+..
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~---------vdtgsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS---------VDTGSQVCSLIWSK-KYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEecc---------cccCCceeeEEEcC-CCCEEEEecCCCCCcEEEEecc
Confidence 9999 56677774 5699999999999988753 23568999999999 55555543 457899999998
Q ss_pred cceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 552 NVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 552 ~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+....... .+|...|..++++|||.+|++|+.|.++++|++-+..
T Consensus 420 s~~~~~~l--~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 420 SMKLVAEL--LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred ccceeeee--cCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 85555555 8899999999999999999999999999999998754
No 71
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.7e-26 Score=231.68 Aligned_cols=301 Identities=20% Similarity=0.305 Sum_probs=239.7
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCccc---cc-------ccccceee-ecccccEEEEEEecCC
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE---LS-------SLYTGQEF-LAHEGSILTMKFSLDG 296 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~---~~-------~~~~~~~l-~~H~~~V~~l~fspdg 296 (755)
+..+..|.-.+.+++++|++++.++++.+++|.=|++..+... .. .....+.- .+|...|.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5566677778888999999999999999999999997765432 11 11111112 3899999999999999
Q ss_pred CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec
Q 004410 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (755)
Q Consensus 297 ~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (755)
+|||+|+.|..|.||+..+.+.
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh---------------------------------------------------------- 236 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH---------------------------------------------------------- 236 (479)
T ss_pred cEEEecCCCceEEEecCcccch----------------------------------------------------------
Confidence 9999999999999999987753
Q ss_pred cCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 377 ~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
+..+.+|.+.|.+++|-... .|++++.|++|++|+++....+.++ +|.+.|..|.... .++.+-+|+.|.+++
T Consensus 237 ----v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~r 311 (479)
T KOG0299|consen 237 ----VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVR 311 (479)
T ss_pred ----hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeE
Confidence 45578999999999998766 9999999999999999887776665 7999999999887 788888888999999
Q ss_pred EEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc----CCCCCeEEEEEcC
Q 004410 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK----LPGKRITGFQFSP 530 (755)
Q Consensus 455 iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~----~~~~~I~~v~fsp 530 (755)
+|++.....+.+.++...+-|++|-.+ ..+++|+.+|.|.+|++...+.+........-... .+...|++++..|
T Consensus 312 lwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~ 390 (479)
T KOG0299|consen 312 LWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP 390 (479)
T ss_pred EEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc
Confidence 999988777778888889999999654 68999999999999999988887655442211111 1123899999999
Q ss_pred CCCCEEEEEECCCcEEEEECCcceeeEEE-eeeccCCceEEEEEecCCCEEEEE-eCCCcEEEEE
Q 004410 531 SDPSKVIVTSADSLVRVLCGENVVGKFKA-SAFRVAGSQMFATFTSDGKHVVSP-SEDSNIYIWN 593 (755)
Q Consensus 531 ~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~-~~~~~~~~v~~l~fspdg~~L~sg-s~Dg~I~iWd 593 (755)
...++++|+.+|.|++|.+.+....+.. ......+.|++++|+++|++|++| +....+--|-
T Consensus 391 -~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 391 -GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred -cCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence 9999999999999999998886433322 113467889999999999977666 3333343343
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=248.58 Aligned_cols=274 Identities=20% Similarity=0.336 Sum_probs=230.6
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
.+.+..|. +.++++++.+++|++|+...... +...+.||.+.|++++|..-+.+|++|+.|.+++|||+.++
T Consensus 210 ~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~------i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 210 VVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL------ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred hhhhheee--cCeEEecCCCceeEEeecccceE------EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 34556666 67889999999999999765443 22348899999999999877889999999999999999888
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
++ .+.+.+|.+.|.++..
T Consensus 282 ~C--------------------------------------------------------------~~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 282 EC--------------------------------------------------------------THSLQGHTSSVRCLTI 299 (537)
T ss_pred cE--------------------------------------------------------------EEEecCCCceEEEEEc
Confidence 75 4556789999999876
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceE
Q 004410 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVS 474 (755)
Q Consensus 397 s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~ 474 (755)
.+. .+++|+.|.+|++|++.++.++.++. |.+.|.++..+ +.++++|+.|++|++||+.+++++ .+.+|...|+
T Consensus 300 ~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 300 DPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY 375 (537)
T ss_pred cCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence 543 78889999999999999999999998 99999999985 799999999999999999999988 6888999999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCC-eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 475 AVCYCPDGKGGIVGTMTGNCRFYDIKDN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 475 ~v~~spdg~~la~gs~dg~I~iwD~~~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
++.+.+. ..++.|+.|++|++||+.+. +++.. ...|..-+..+.+ .++.|++++.|++|++||..+.
T Consensus 376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t--------l~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT--------LQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EEEecCc-ceEEeeeeccceEeecCCchhhhhhh--------hcCCccccccccc---ccceeEeccccccEEEeecccC
Confidence 9988665 89999999999999999998 55543 2234555666665 4589999999999999999887
Q ss_pred eeeEEEeeec-cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 554 VGKFKASAFR-VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 554 ~~~~~~~~~~-~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
...... .. |.+.|..+++. ...+++++.||.+++||+.++...
T Consensus 444 ~~~~~~--~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 444 ECLRTL--EGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ceeeee--ccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 766665 33 66788888876 578999999999999999998733
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-24 Score=213.52 Aligned_cols=294 Identities=22% Similarity=0.288 Sum_probs=226.7
Q ss_pred ccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 275 ~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
.+.+.+..-.+.|.+|.|+++|.+|++++.|.+|+|||..+++.++.+......+..+.|.......+......
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~------ 78 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE------ 78 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC------
Confidence 34445555678899999999999999999999999999999999999988888888888876654443332211
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEE
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTS 433 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~ 433 (755)
+.++...+.. ..+.++.|.||...|..|+.+|-+ .+++++.|++|++||++..+|...+.. ..-..
T Consensus 79 --------d~tIryLsl~----dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi 145 (311)
T KOG1446|consen 79 --------DDTIRYLSLH----DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPI 145 (311)
T ss_pred --------CCceEEEEee----cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-CCCcc
Confidence 1111111111 135578899999999999999988 999999999999999998888777643 23345
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEEcCCC---eEEE--ec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 434 VAFNPVDDNYFISGSIDGKVRIWEVRRC---QVVD--YT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~Dg~V~iwdl~~~---~~~~--~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
++|.| .|-+||++...+.|++||++.- .... .. ......+.+.|+|||++|++++..+.+++.|.-+|.++..
T Consensus 146 ~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 146 AAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST 224 (311)
T ss_pred eeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence 78999 9999999998889999999863 2222 22 3456789999999999999999999999999999997776
Q ss_pred eeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 508 NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
+...... ..--....|.| +++++++|+.||+|.+|++.+.......... +.+++.++.|.|....++++ +.
T Consensus 225 fs~~~~~-----~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s 295 (311)
T KOG1446|consen 225 FSGYPNA-----GNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA--SS 295 (311)
T ss_pred EeeccCC-----CCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeec--Cc
Confidence 5542211 11225778999 9999999999999999999887766665222 68889999999976666655 56
Q ss_pred cEEEEEcCCC
Q 004410 588 NIYIWNYSNQ 597 (755)
Q Consensus 588 ~I~iWd~~~~ 597 (755)
.+.+|=....
T Consensus 296 ~l~fw~p~~~ 305 (311)
T KOG1446|consen 296 NLVFWLPDED 305 (311)
T ss_pred eEEEEecccc
Confidence 8888866543
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=6.8e-26 Score=226.82 Aligned_cols=275 Identities=17% Similarity=0.322 Sum_probs=216.6
Q ss_pred cccceeeeeccCcceeecCCC---CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 227 KLGAMARIIDRHGSATLKPGD---HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg---~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
....+.+|.+.+.++++--.+ ..+++++.|.++++|..+.....+.... ...||+..|.++...++|..+++|+
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~---~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK---VCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh---HhcccccceeEEEecCCCCeEEeec
Confidence 445677888888876654333 3699999999999999987766555443 3459999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|.+|+||+..... ..++..... ...+..+. ..-.....|+.+
T Consensus 213 ~D~~lkiWs~~~~~-~~~~E~~s~--------------------~rrk~~~~----------------~~~~~~r~P~vt 255 (423)
T KOG0313|consen 213 WDTMLKIWSVETDE-EDELESSSN--------------------RRRKKQKR----------------EKEGGTRTPLVT 255 (423)
T ss_pred ccceeeecccCCCc-cccccccch--------------------hhhhhhhh----------------hhcccccCceEE
Confidence 99999999943221 111110000 00000000 000112467889
Q ss_pred ecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC--
Q 004410 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-- 461 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-- 461 (755)
+.||...|.++.|++.+.+++++.|.+|+.||+.++.++..+..+..++|+..+| ..++|++|+.|..|++||.+++
T Consensus 256 l~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred ecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCC
Confidence 9999999999999997799999999999999999999999999999999999999 9999999999999999999875
Q ss_pred eEE--EeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCe-EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 462 QVV--DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQ-LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 462 ~~~--~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~-~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
.++ ++.+|...|.++.|+| +...|++|+.|+++++||+++.+ .+.. ...|..+|.++.|+ ++..|+
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd--------I~~h~DKvl~vdW~--~~~~Iv 404 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD--------IAGHNDKVLSVDWN--EGGLIV 404 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee--------eccCCceEEEEecc--CCceEE
Confidence 333 6889999999999999 45678889999999999999876 3332 23467899999998 567999
Q ss_pred EEECCCcEEEEECCc
Q 004410 538 VTSADSLVRVLCGEN 552 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~ 552 (755)
+|+.|.+|+|+....
T Consensus 405 SGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 405 SGGADNKLRIFKGSP 419 (423)
T ss_pred eccCcceEEEecccc
Confidence 999999999997543
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.4e-26 Score=248.32 Aligned_cols=248 Identities=22% Similarity=0.316 Sum_probs=201.1
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcc---------------------------c---------c-----
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR---------------------------E---------L----- 271 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~---------------------------~---------~----- 271 (755)
.|.+.|.++.||+||++||+|+.|+.|+||.+..... . .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6778888999999999999999999999998654000 0 0
Q ss_pred -c-----------ccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCC
Q 004410 272 -S-----------SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339 (755)
Q Consensus 272 -~-----------~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (755)
. .-.+..+|.||.+.|..|.||.+ ++|++++.|.+||+|++...+++..|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F----------------- 406 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF----------------- 406 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-----------------
Confidence 0 00112458899999999999975 58999999999999999877654332
Q ss_pred CceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCC
Q 004410 340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG 417 (755)
Q Consensus 340 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~ 417 (755)
.|..-|+|++|+|.+ ++++|+-|+.||||++.
T Consensus 407 ----------------------------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 407 ----------------------------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred ----------------------------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 399999999999955 99999999999999999
Q ss_pred CCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE---eccC------CcceEEEEEccC-CCeEEE
Q 004410 418 IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDI------REIVSAVCYCPD-GKGGIV 487 (755)
Q Consensus 418 s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---~~~~------~~~V~~v~~spd-g~~la~ 487 (755)
..+.+........|++++|.| +|++.+.|+.+|.+++|+....+++. ...+ ...|+.+.|.|. ...+++
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred cCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 988887777779999999999 89999999999999999999887663 1111 237999999984 446888
Q ss_pred EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 488 GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 488 gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
.+.|..|+|||.++..++..++- .. ....-....|+. |+++|++++.|..|+||+...
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG----~~--n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKG----FR--NTSSQISASFSS-DGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcc----cc--cCCcceeeeEcc-CCCEEEEeecCceEEEEeCCC
Confidence 89999999999988887764332 11 123345678888 999999999999999999754
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=5.5e-25 Score=210.28 Aligned_cols=285 Identities=14% Similarity=0.218 Sum_probs=238.2
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCCcE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV 308 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I 308 (755)
.+.+|...+.+++|+-+|..||+|+.|++++||++..... .....+.+|.+.|-.++|+| ...+|++++.|.+|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i 89 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI 89 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-----hhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence 4455667788899999999999999999999999876532 12234689999999999988 56799999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
++||+..+++...+.. .
T Consensus 90 r~wd~r~~k~~~~i~~---------------------------------------------------------------~ 106 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIET---------------------------------------------------------------K 106 (313)
T ss_pred EEEEeccCcEEEEeec---------------------------------------------------------------c
Confidence 9999998876544321 1
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Ee
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~ 466 (755)
+.=.-+.|+|+| +++.++.|..|.+.|.++.+.+...+....+..+.|+- ++++|+.....|+|.|.....-+.+ .+
T Consensus 107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLkpv~si 185 (313)
T KOG1407|consen 107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLKPVQSI 185 (313)
T ss_pred CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecC-CCCEEEEecCCceEEEEecccccccccc
Confidence 122347899999 99999999999999999999999998889999999995 8888888888899999999987766 67
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
..|.....||.|+|+|++||+|+.|..+.+||+...-+... ...+.-+|..+.|+- ++++|++++.|..|-
T Consensus 186 ~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~--------isRldwpVRTlSFS~-dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC--------ISRLDWPVRTLSFSH-DGRMLASASEDHFID 256 (313)
T ss_pred ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhee--------eccccCceEEEEecc-CcceeeccCccceEE
Confidence 88999999999999999999999999999999987554432 223567899999999 999999999999999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC---------CcEEEEEcC
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED---------SNIYIWNYS 595 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D---------g~I~iWd~~ 595 (755)
|-+..++..... ..+.++...++|+|...+||-++.| |.|+||-+.
T Consensus 257 IA~vetGd~~~e---I~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 257 IAEVETGDRVWE---IPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eEecccCCeEEE---eeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 999888777766 4578899999999999999988765 456665443
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=4.9e-25 Score=223.85 Aligned_cols=276 Identities=20% Similarity=0.282 Sum_probs=232.5
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
+...|....+++|+.|..+.++|..... +.+.|.||...|+.+.|+|+...+++++.|..|+||.+.....
T Consensus 225 ld~~~s~~~ilTGG~d~~av~~d~~s~q-------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-- 295 (506)
T KOG0289|consen 225 LDIIPSSSKILTGGEDKTAVLFDKPSNQ-------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-- 295 (506)
T ss_pred EeecCCCCcceecCCCCceEEEecchhh-------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC--
Confidence 5556666789999999999999976443 3356899999999999999999999999999999998754321
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
......|..+|+.+..+|.|
T Consensus 296 ------------------------------------------------------------~~~~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 296 ------------------------------------------------------------PTSSRPHEEPVTGLSLHPTG 315 (506)
T ss_pred ------------------------------------------------------------ccccccccccceeeeeccCC
Confidence 12345699999999999999
Q ss_pred -eEEEEeCCCcEEEEeCCCCeEEEEEecC---CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEE
Q 004410 401 -FLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA 475 (755)
Q Consensus 401 -~L~s~s~Dg~V~iWdl~s~~~~~~~~h~---~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~ 475 (755)
||++++.|++..+.|++++.++....+. -.+++++|+| |+.+|.+|..||.|+|||+..+..+ .+.+|.++|.+
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA 394 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence 9999999999999999999999888764 4589999999 9999999999999999999988766 68889999999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG 555 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~ 555 (755)
|+|+.+|.+|++++.|+.|++||++..+...++++ . ....+..+.|.+ .+.+|++++.|=+|++++-.+...
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--~-----~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--D-----EKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcccceeec--c-----ccccceeEEEcC-CCCeEEeecceeEEEEEecccccc
Confidence 99999999999999999999999998876654432 1 224789999999 889999998887777777544333
Q ss_pred eEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 556 KFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 556 ~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
........|.+..+.+.|....++++++|.|..++++.+
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 333333567788899999999999999999999998865
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-24 Score=213.71 Aligned_cols=270 Identities=20% Similarity=0.333 Sum_probs=219.5
Q ss_pred eEEeeCCCeEEEEECCCCcccc-----cccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 250 LTLGQRMRRVRVHPVKKQSREL-----SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 250 lasgs~dg~V~Vw~~~~~~~~~-----~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
+++|+....|.=+++....+.. .++.+.-.+.+|.++|++++. ++.|+|+|+.|-+|+|||+.....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q------ 75 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ------ 75 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh------
Confidence 4566666666666554333111 112223457899999999999 599999999999999999876543
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---e
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---F 401 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~ 401 (755)
+..+..|.+.|+++.|.+.- .
T Consensus 76 --------------------------------------------------------lg~ll~HagsitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 76 --------------------------------------------------------LGILLSHAGSITALKFYPPLSKSH 99 (362)
T ss_pred --------------------------------------------------------hcceeccccceEEEEecCCcchhh
Confidence 33455699999999999866 8
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc
Q 004410 402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (755)
Q Consensus 402 L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp 480 (755)
|++|+.||.|.+|++....++..+. |.+.|+.|+++| .+++-++.+.|+.+++||+-.++.-.........+.+.|+|
T Consensus 100 LlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~ 178 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP 178 (362)
T ss_pred eeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC
Confidence 9999999999999999999999995 999999999999 99999999999999999999988777667777777799999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe
Q 004410 481 DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 481 dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 560 (755)
.|.+++++..+ .|-+|.+.+..+...... ..++.++.|. ++..+++|..|+.|.+||..+.......
T Consensus 179 ~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~---------~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~- 245 (362)
T KOG0294|consen 179 QGDHFVVSGRN-KIDIYQLDNASVFREIEN---------PKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEF- 245 (362)
T ss_pred CCCEEEEEecc-EEEEEecccHhHhhhhhc---------cccceeeeec--CCceEEEecCCceEEEeccCCCccceee-
Confidence 99999987754 689999988776543221 2456666665 7789999999999999999886555555
Q ss_pred eeccCCceEEEEE--ecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 561 AFRVAGSQMFATF--TSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 561 ~~~~~~~v~~l~f--spdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+|...|-++.+ .|++.||+|+|.||.|+|||++...
T Consensus 246 -~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 246 -LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred -ecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 789999999884 5678999999999999999998775
No 79
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=3.7e-24 Score=239.08 Aligned_cols=254 Identities=15% Similarity=0.244 Sum_probs=192.3
Q ss_pred eeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeee-eeeecCCCCCc
Q 004410 253 GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERL-DGFDVQDTDPS 330 (755)
Q Consensus 253 gs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~-~~~~~~~~~~~ 330 (755)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +.+||||+.||+|+|||+.++... ..
T Consensus 50 GG~~gvI~L~~~~r~~-------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--------- 113 (568)
T ss_pred CCceeEEEeeecCCCc-------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---------
Confidence 5668899999865432 33467899999999999996 789999999999999999754210 00
Q ss_pred eeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCC
Q 004410 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD 408 (755)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~D 408 (755)
...++..+.+|...|.+++|+|++ .|++++.|
T Consensus 114 ----------------------------------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 114 ----------------------------------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred ----------------------------------------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 012345677899999999999988 46789999
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEE-----EEEccCC
Q 004410 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA-----VCYCPDG 482 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~-----v~~spdg 482 (755)
++|+|||+.+++.+..+.|...|.+++|+| ++.+|++++.|+.|+|||+++++.+ .+..|.+.+.+ ..|++++
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence 999999999999888887888999999999 9999999999999999999998876 46667665433 3456898
Q ss_pred CeEEEEeCCC----cEEEEECCC-CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeE
Q 004410 483 KGGIVGTMTG----NCRFYDIKD-NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF 557 (755)
Q Consensus 483 ~~la~gs~dg----~I~iwD~~~-~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~ 557 (755)
.+|++++.++ .|+|||++. ...+....+ ..+...+.. .|.++++.++++|+.|+.|++|++.......
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l------d~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~ 299 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSI------DNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLGSIRK 299 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceEEEEe------cCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCCcEEe
Confidence 9999987764 799999995 333322111 112223333 3335478899999999999999987653222
Q ss_pred EEeeeccCCceEEEEEecCC
Q 004410 558 KASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 558 ~~~~~~~~~~v~~l~fspdg 577 (755)
. ....+..++..++|.|..
T Consensus 300 l-~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 300 V-NEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred e-cccccCCCccceEEcccc
Confidence 2 224466788899999964
No 80
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=9.1e-25 Score=217.88 Aligned_cols=297 Identities=15% Similarity=0.205 Sum_probs=236.1
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
++|..|++.|.+++.+|+.+++|||+.|..-.||++.++....++..+...+.++.|+.++ ..+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg----------------tlL 121 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG----------------TLL 121 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc----------------eEE
Confidence 4578899999999999999999999999999999999999999999888888888887654 122
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~ 435 (755)
.++.-++.+.+|.... +.....+...-..|.-|.|+|.+ .|++|+.||.|.+|.+.++...+++ +|+.++++-.
T Consensus 122 ATGdmsG~v~v~~~st----g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 122 ATGDMSGKVLVFKVST----GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred EecCCCccEEEEEccc----CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence 3344444455444332 12233444556788899999988 9999999999999999996666666 5999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc--CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEec
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ 513 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~--~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~ 513 (755)
|.| +|+.++++..||+|++|++.+++++.... .....+++.++.++..++.|..++.+++-+..+++.+.-......
T Consensus 198 f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 198 FIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred ccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 999 89999999999999999999998874332 244578899999999999999999999999999988754321111
Q ss_pred ccccCCCCCeEEEEEcCC--CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 514 GKKKLPGKRITGFQFSPS--DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 514 ~~~~~~~~~I~~v~fsp~--d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
.....+...+.++.+.|. .-.+.++|+-||+|.|||......... ..|...|+.+.|-+ ..+|++++.||.|++
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~---c~he~~V~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI---CEHEDGVTKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee---ccCCCceEEEEEcC-cchheeeccCceEEe
Confidence 122234455566666553 445788999999999999887655544 45888899999998 789999999999999
Q ss_pred EEcCCCCc
Q 004410 592 WNYSNQDK 599 (755)
Q Consensus 592 Wd~~~~~~ 599 (755)
||..+|+.
T Consensus 353 wDaRtG~l 360 (399)
T KOG0296|consen 353 WDARTGQL 360 (399)
T ss_pred eeccccce
Confidence 99999973
No 81
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.8e-24 Score=239.07 Aligned_cols=258 Identities=14% Similarity=0.187 Sum_probs=195.0
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
|-..|.....++|+..+++++.+.....|+...+..+..+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~--------------------------------------- 59 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHT--------------------------------------- 59 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeecc---------------------------------------
Confidence 34556777778888888999999999999865442111000
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCe-------EEEEE-ecCCcEE
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDR-------CLRVF-SHNNYVT 432 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~-------~~~~~-~h~~~V~ 432 (755)
...++.. ....+.+|.+.|.+++|+| ++ +|++++.|++|++||+.++. ++..+ .|...|.
T Consensus 60 ---------~~G~~~~-~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~ 129 (493)
T PTZ00421 60 ---------DYGKLAS-NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG 129 (493)
T ss_pred ---------ccccCCC-CCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE
Confidence 0000001 1234679999999999999 66 89999999999999997652 34444 4999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
+++|+|..+++|++|+.|++|+|||+.+++.+ .+..|...|.+++|+|+|.+|++++.|+.|++||+++++.+....
T Consensus 130 ~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-- 207 (493)
T PTZ00421 130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-- 207 (493)
T ss_pred EEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe--
Confidence 99999944579999999999999999998776 566788899999999999999999999999999999987654321
Q ss_pred ecccccCCC-CCeEEEEEcCCCCCEEEEEE----CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-C
Q 004410 512 LQGKKKLPG-KRITGFQFSPSDPSKVIVTS----ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-E 585 (755)
Q Consensus 512 ~~~~~~~~~-~~I~~v~fsp~d~~~l~s~s----~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~ 585 (755)
.|. ..+..+.|.+ +...+++++ .|+.|++||..+....+..........+....|++++.+|++++ .
T Consensus 208 ------~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkg 280 (493)
T PTZ00421 208 ------AHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKG 280 (493)
T ss_pred ------cCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeC
Confidence 122 2345678888 555565543 47899999998765444332223444566778999999999888 5
Q ss_pred CCcEEEEEcCCCC
Q 004410 586 DSNIYIWNYSNQD 598 (755)
Q Consensus 586 Dg~I~iWd~~~~~ 598 (755)
|+.|++||+.+++
T Consensus 281 Dg~Iriwdl~~~~ 293 (493)
T PTZ00421 281 EGNIRCFELMNER 293 (493)
T ss_pred CCeEEEEEeeCCc
Confidence 9999999999876
No 82
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.1e-25 Score=216.51 Aligned_cols=332 Identities=15% Similarity=0.239 Sum_probs=248.2
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
..+.+.+|++.+..++......++.+++.|.+.+||.++.+. +..++.||.+.|++|+|++.+.+++|++.|+
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-------CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ 212 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-------CLATYTGHTGSVNSIKFHNSGLLLLTASGDE 212 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-------ceeeecccccceeeEEeccccceEEEccCCc
Confidence 345678899999998888888899999999999999977654 3456899999999999999999999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+-+||...-.-.+..-..+ .... .....-..+ .-..........|+. ....|+..+.+
T Consensus 213 taHIW~~av~~~vP~~~a~-~~hS-------sEeE~e~sD----e~~~d~d~~~~sD~~----------tiRvPl~~ltg 270 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAP-SDHS-------SEEEEEHSD----EHNRDTDSSEKSDGH----------TIRVPLMRLTG 270 (481)
T ss_pred chHHHHHhhcCcCCCCCCC-CCCC-------chhhhhccc----ccccccccccccCCc----------eeeeeeeeeec
Confidence 9999974211100000000 0000 000000000 000000000011111 11357889999
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe--
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-- 462 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-- 462 (755)
|.+.|.+..|...+ .+++++.|++..+||++++..+..+ +|....+.++-+| ..+++++.+.|.+.++||.+..-
T Consensus 271 H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~s 349 (481)
T KOG0300|consen 271 HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQS 349 (481)
T ss_pred cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcce
Confidence 99999999999988 9999999999999999999999998 5999999999999 89999999999999999998532
Q ss_pred EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+-.+.+|.+.|+++.|..+ ..+++|+.|.+|++||+++...... .--....++.++++. +...|+.--.+
T Consensus 350 V~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplA--------TIRtdS~~NRvavs~-g~~iIAiPhDN 419 (481)
T KOG0300|consen 350 VAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLA--------TIRTDSPANRVAVSK-GHPIIAIPHDN 419 (481)
T ss_pred eeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcce--------eeecCCccceeEeec-CCceEEeccCC
Confidence 3368899999999999876 4689999999999999987553211 011346788889987 77788888899
Q ss_pred CcEEEEECCccee--eEEEeeeccCCceEEEEEecCC--CEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVG--KFKASAFRVAGSQMFATFTSDG--KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~--~~~~~~~~~~~~v~~l~fspdg--~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..|++||+..... .......+|...|++++|..+. .-|++++.|..+.-|+++...
T Consensus 420 RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 420 RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 9999999875322 2222336788899999997654 358899999999999998654
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=1e-25 Score=227.61 Aligned_cols=269 Identities=22% Similarity=0.416 Sum_probs=221.4
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
.+..|.+.|..+.|-++...|++|+.|..|++|++...+.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------------------------- 209 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------------------------- 209 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh----------------------------------------
Confidence 4678999999999999988999999999999999865431
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEE
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAF 436 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~f 436 (755)
..+.++.|..+.|+.+.|.+++ ++++++.|+.+++|++...+...++ +|.+.|+++.|
T Consensus 210 --------------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~ 269 (459)
T KOG0288|consen 210 --------------------ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKF 269 (459)
T ss_pred --------------------hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehh
Confidence 1244567788899999999999 9999999999999999999999888 49999999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc
Q 004410 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
.. ....+++|+.|.+|++||+....+.........+..|+.+ +..+++|..|++|++||+++........
T Consensus 270 ~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~------- 339 (459)
T KOG0288|consen 270 KL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP------- 339 (459)
T ss_pred hc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEee-------
Confidence 87 5556999999999999999998888666666667777775 5688999999999999999988776432
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce--eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV--GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.++.|+++..++ ++..|++++.|.++.+.|+.+.. +.+....+......+.+.|||++.|+++||.||.|+||++
T Consensus 340 --~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 340 --LGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred --cCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 245899999999 89999999999999999988743 4444443444556889999999999999999999999999
Q ss_pred CCCCcccCCCccccceeeeecCCeEEEEcCCCC
Q 004410 595 SNQDKSSSRSKSIWSCESFLSHNVSVAIPWVGL 627 (755)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~f~~~~~~va~~w~g~ 627 (755)
.+++.+..... -.++.....++|++.
T Consensus 417 ~tgKlE~~l~~-------s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 417 FTGKLEKVLSL-------STSNAAITSLSWNPS 442 (459)
T ss_pred cCceEEEEecc-------CCCCcceEEEEEcCC
Confidence 99973322111 113335668889875
No 84
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=6.5e-24 Score=207.97 Aligned_cols=273 Identities=19% Similarity=0.262 Sum_probs=220.7
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
.+.+..+.|+|.+..|++++.||.+++|+....... ....|..++.+++|.+ ...+++|+.||.|+++|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--------~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--------LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--------hheecCCceeeeeccC-CceEEEeccCceEEEEEec
Confidence 467888999999999999999999999998765221 1235899999999987 4578999999999999998
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
++.. ..+..|...|.+|
T Consensus 84 ~~~~---------------------------------------------------------------~~igth~~~i~ci 100 (323)
T KOG1036|consen 84 TGNE---------------------------------------------------------------DQIGTHDEGIRCI 100 (323)
T ss_pred CCcc---------------------------------------------------------------eeeccCCCceEEE
Confidence 7752 2345699999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE---eccCC
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDIR 470 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---~~~~~ 470 (755)
.+++-. .+++|+.|++|++||.+...+...+.....|.|+.. .++.|++|+.|..|.+||+++..... -...+
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk 177 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK 177 (323)
T ss_pred EeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccce
Confidence 999755 999999999999999998777777777789999986 56899999999999999999865542 34556
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC-----CCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP-----GKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~-----~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
-.+.+|++-|++..+++++.+|.|.+=.+......+..+..+..|.... ..+|++++|+| -...+++|+.||.|
T Consensus 178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V 256 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIV 256 (323)
T ss_pred eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceE
Confidence 7899999999999999999999988876665533333333333332222 24689999999 68899999999999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
.+||+.+.+..... .+....|.+++|+.||..||.|+.
T Consensus 257 ~~Wd~~~rKrl~q~--~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 257 NIWDLFNRKRLKQL--AKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEccCcchhhhhhc--cCCCCceEEEEeccCCCeEEEEec
Confidence 99999876655554 445678999999999999999874
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.4e-25 Score=209.02 Aligned_cols=239 Identities=19% Similarity=0.326 Sum_probs=200.4
Q ss_pred ccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEc
Q 004410 236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 236 ~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv 313 (755)
|....++|++... .+++++.||.+++||...... +.+.++.|+..|.++.|++ +++.+++++.|++|++|+.
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~ 134 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP 134 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecC
Confidence 3344589998865 788899999999999654443 4456888999999999998 5667888899999999987
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
..++ .++++.||..-|..
T Consensus 135 ~r~~--------------------------------------------------------------Sv~Tf~gh~~~Iy~ 152 (311)
T KOG0277|consen 135 NRPN--------------------------------------------------------------SVQTFNGHNSCIYQ 152 (311)
T ss_pred CCCc--------------------------------------------------------------ceEeecCCccEEEE
Confidence 5432 25678899999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEeCCC-CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--Eecc
Q 004410 394 LSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTD 468 (755)
Q Consensus 394 l~~s~~~--~L~s~s~Dg~V~iWdl~s-~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~ 468 (755)
.+|+|.- .+++++.|+++++||++. ++.+....|...|.|+.|+.-+.+.+++|+.|+.||+||++.-+.. .+.+
T Consensus 153 a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g 232 (311)
T KOG0277|consen 153 AAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG 232 (311)
T ss_pred EecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC
Confidence 9999965 999999999999999874 5555555699999999999989999999999999999999976533 6788
Q ss_pred CCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 469 IREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 469 ~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
|.-.|..+.|+|. ...|++++.|-+++|||...+.-.. .....|..-+.++.|++.++.+++.++.|..++|
T Consensus 233 h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~-------e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 233 HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI-------ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYV 305 (311)
T ss_pred CceEEEEEecCcchhhHhhhccccceEEecccccchhhh-------hhhhccceEEeccccccccCceeeecccccceee
Confidence 9999999999995 5688999999999999998654322 2234567778999999999999999999999999
Q ss_pred EE
Q 004410 548 LC 549 (755)
Q Consensus 548 wd 549 (755)
|+
T Consensus 306 w~ 307 (311)
T KOG0277|consen 306 WN 307 (311)
T ss_pred ec
Confidence 97
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.8e-24 Score=223.41 Aligned_cols=234 Identities=21% Similarity=0.327 Sum_probs=200.1
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv 313 (755)
.+.+.++.|-.||++||+|...|.|+|+|++... ..+.+.+|+.+|..+.|+|+ +..|++|+.|+.+++||+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHH-------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 4567779999999999999999999999955422 23457899999999999995 567888999999999998
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.+... ...+.+|+..|.+
T Consensus 141 s~a~v--------------------------------------------------------------~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 141 STAYV--------------------------------------------------------------QAELSGHTDYVRC 158 (487)
T ss_pred CCcEE--------------------------------------------------------------EEEecCCcceeEe
Confidence 76542 2356789999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEeCCCC-eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC-eEEE-ecc
Q 004410 394 LSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVD-YTD 468 (755)
Q Consensus 394 l~~s~~~--~L~s~s~Dg~V~iWdl~s~-~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-~~~~-~~~ 468 (755)
.+|+|-+ .+++|+.||+|++||+++. ..+..+.|..+|..+.+-| .+.++++++ ...|+|||+-++ +.+. ...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~ 236 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFN 236 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhc
Confidence 9999976 8999999999999999987 7888889999999999999 889999887 468999999954 5554 444
Q ss_pred CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
|...|||+++..++..|++|+-|+.+++||+.+.+.+..+.. .++|.+++.+| ++..+++|-.+|.+.+-
T Consensus 237 H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---------~~pvLsiavs~-dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 237 HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---------PGPVLSIAVSP-DDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---------ccceeeEEecC-CCceEEEecccceeeee
Confidence 999999999999999999999999999999888887754432 46899999999 88999999999998876
Q ss_pred E
Q 004410 549 C 549 (755)
Q Consensus 549 d 549 (755)
+
T Consensus 307 r 307 (487)
T KOG0310|consen 307 R 307 (487)
T ss_pred h
Confidence 3
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=4.4e-25 Score=209.40 Aligned_cols=246 Identities=21% Similarity=0.302 Sum_probs=216.1
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
++++.+|+..|.+..++.+-...|+++.|-+-+||+.-++.. +.. ..|+.-|.+++|+.|.++|+||+.++.
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde-lhs-------f~hkhivk~~af~~ds~~lltgg~ekl 123 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE-LHS-------FEHKHIVKAVAFSQDSNYLLTGGQEKL 123 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh-hhh-------hhhhheeeeEEecccchhhhccchHHH
Confidence 567889999999989988888999999999999999765543 222 248889999999999999999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
+||+|++..+ .|..++.+|
T Consensus 124 lrvfdln~p~-------------------------------------------------------------App~E~~gh 142 (334)
T KOG0278|consen 124 LRVFDLNRPK-------------------------------------------------------------APPKEISGH 142 (334)
T ss_pred hhhhhccCCC-------------------------------------------------------------CCchhhcCC
Confidence 9999986543 345678899
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
.+.|..+.|.... .+++++.|++||+||.+++..++.+..+..|+++.+++ ++++|.+ ...+.|.+||..+-.++..
T Consensus 143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEE-ecCceeEEeccccccceee
Confidence 9999999999877 89999999999999999999999999999999999999 8876655 4568899999999999988
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
......|.+.+++|+-..+++|+.|+.++.||..++..+.. ..+.|.++|.++.|+| ++...++|+.||+|+
T Consensus 221 ~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-------~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 221 YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-------YNKGHFGPVHCVRFSP-DGELYASGSEDGTIR 292 (334)
T ss_pred ccCccccccccccCCCceEEecCcceEEEEEeccCCceeee-------cccCCCCceEEEEECC-CCceeeccCCCceEE
Confidence 88899999999999999999999999999999999987643 2356789999999999 999999999999999
Q ss_pred EEECCc
Q 004410 547 VLCGEN 552 (755)
Q Consensus 547 iwd~~~ 552 (755)
||....
T Consensus 293 lWQt~~ 298 (334)
T KOG0278|consen 293 LWQTTP 298 (334)
T ss_pred EEEecC
Confidence 998653
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.3e-23 Score=203.07 Aligned_cols=273 Identities=19% Similarity=0.233 Sum_probs=215.9
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
-++.|..|.|+|.++.|+.++.||.+++|++......
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~------------------------------------------- 48 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK------------------------------------------- 48 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh-------------------------------------------
Confidence 3578999999999999999999999999998665321
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~ 442 (755)
....|..++++++|.++..+++|+.||.|+++|+.++.....-.|...|.||.+.+ ..+
T Consensus 49 --------------------~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~ 107 (323)
T KOG1036|consen 49 --------------------LKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVG 107 (323)
T ss_pred --------------------hheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCC
Confidence 12348899999999998899999999999999999999988888999999999999 888
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCC
Q 004410 443 YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 443 ~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
.+++|+.|++|++||.+....+........|.++.. .|..|++|+.+..+.+||+++.....+ .....-.-.
T Consensus 108 ~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q------~reS~lkyq 179 (323)
T KOG1036|consen 108 CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQ------RRESSLKYQ 179 (323)
T ss_pred eEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhh------hccccceeE
Confidence 999999999999999998766666666668888777 678999999999999999998765431 112223356
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCcc----eeeEEEeeec-------cCCceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENV----VGKFKASAFR-------VAGSQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~----~~~~~~~~~~-------~~~~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
+.++++.| ++.-+++++-||.|.+=..... ..++.+..+. .--+|++++|+|-...|+||+.||.|.+
T Consensus 180 tR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~ 258 (323)
T KOG1036|consen 180 TRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI 258 (323)
T ss_pred EEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE
Confidence 88999999 7888899999999988554443 2333321111 1237899999999999999999999999
Q ss_pred EEcCCCCcccCCCcc--ccceeeeecCCeEEEEcCCCCC
Q 004410 592 WNYSNQDKSSSRSKS--IWSCESFLSHNVSVAIPWVGLE 628 (755)
Q Consensus 592 Wd~~~~~~~~~~~~~--~~~~~~f~~~~~~va~~w~g~~ 628 (755)
||+.+.++..+..+- ......|...+..+|++-+-+.
T Consensus 259 Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~y 297 (323)
T KOG1036|consen 259 WDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQY 297 (323)
T ss_pred ccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhh
Confidence 999988755443332 2344566666777777766553
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.4e-24 Score=230.39 Aligned_cols=279 Identities=19% Similarity=0.297 Sum_probs=228.2
Q ss_pred CCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 245 pdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
|.+++|++|++||.|++|+......+.+.. ....++.|.+.|..+...-+|+.|++++.|-+|++|+...+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------ 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------ 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc------
Confidence 566789999999999999987655443332 2356889999999999999999999999999999999865420
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE-cCCC-eE
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW-SKNG-FL 402 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~-s~~~-~L 402 (755)
-.+.++..|...|.|+++ -++. .+
T Consensus 108 ------------------------------------------------------~c~stir~H~DYVkcla~~ak~~~lv 133 (735)
T KOG0308|consen 108 ------------------------------------------------------FCMSTIRTHKDYVKCLAYIAKNNELV 133 (735)
T ss_pred ------------------------------------------------------hhHhhhhcccchheeeeecccCceeE
Confidence 113456789999999999 6666 99
Q ss_pred EEEeCCCcEEEEeCCCC--eEEEEE----------ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccC
Q 004410 403 LSSSADKTVRLWQVGID--RCLRVF----------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI 469 (755)
Q Consensus 403 ~s~s~Dg~V~iWdl~s~--~~~~~~----------~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~ 469 (755)
++|+-|+.|.|||+.++ +.+..+ ++...|++++.++ .+..|++|+..+.|++||.++++.+ .+.+|
T Consensus 134 aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGH 212 (735)
T KOG0308|consen 134 ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH 212 (735)
T ss_pred EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeecc
Confidence 99999999999999977 233322 3778899999999 8899999999999999999987654 88899
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
...|.++..++||..+++++.||+|++||+...+.+.++. .|...+++++.+| +-..+++|+.|+.|..-|
T Consensus 213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~--------vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI--------VHKEGVWALQSSP-SFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE--------eccCceEEEeeCC-CcceEEecCCCCcEEecc
Confidence 9999999999999999999999999999999998887643 3566799999998 889999999999999999
Q ss_pred CCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
+.+....... .....+|..+..+.+..-+-+++.|+.|+-|...-
T Consensus 284 l~n~~~~tli--ck~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 284 LRNPAKSTLI--CKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred cCCchhheEe--ecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 8875322222 44556677777665555557778889999997654
No 90
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.6e-23 Score=202.83 Aligned_cols=270 Identities=23% Similarity=0.338 Sum_probs=210.1
Q ss_pred ccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 283 HEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 283 H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
-++.|.+|+||| ...+|+.++.|++||+|+++.....
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~------------------------------------------ 63 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL------------------------------------------ 63 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc------------------------------------------
Confidence 467899999999 5667779999999999999763210
Q ss_pred CCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCC
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVD 440 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d 440 (755)
.+ .....|.++|++++|+.+| .+++|+.|+.+++||+.+++....-.|.++|.++.|-+ .
T Consensus 64 -----------------~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~ 124 (347)
T KOG0647|consen 64 -----------------VP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-G 124 (347)
T ss_pred -----------------cc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-C
Confidence 00 1234689999999999999 99999999999999999998888888999999999987 5
Q ss_pred CC--EEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 441 DN--YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 441 ~~--~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
.. .|++|+.|.+|+.||.+....+......+.+.++.. -...+++++.+..|.+|+++++...... ....
T Consensus 125 ~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~------~~Sp 196 (347)
T KOG0647|consen 125 MNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKR------IESP 196 (347)
T ss_pred CCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhh------hcCc
Confidence 55 899999999999999999999888888888888766 3458899999999999999876544221 1112
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc--eeeEEEeeecc-------CCceEEEEEecCCCEEEEEeCCCcE
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV--VGKFKASAFRV-------AGSQMFATFTSDGKHVVSPSEDSNI 589 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~~~-------~~~v~~l~fspdg~~L~sgs~Dg~I 589 (755)
..-.+.+++..+ +....+.|+-+|.+.|..+... ...|.+..++. --.|++++|+|....|+|++.||++
T Consensus 197 Lk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 197 LKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF 275 (347)
T ss_pred ccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE
Confidence 334678888888 6666799999999999887765 44444432332 2257889999999999999999999
Q ss_pred EEEEcCCCCcccC--CCccccceeeeecCCeEEEE
Q 004410 590 YIWNYSNQDKSSS--RSKSIWSCESFLSHNVSVAI 622 (755)
Q Consensus 590 ~iWd~~~~~~~~~--~~~~~~~~~~f~~~~~~va~ 622 (755)
.+||-+...++.. ......+|-.|...+...|.
T Consensus 276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred EEecchhhhhhhccCcCCCccceeEecCCCCEEEE
Confidence 9999876654332 22233466667666655544
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=2.5e-23 Score=199.54 Aligned_cols=232 Identities=22% Similarity=0.340 Sum_probs=201.6
Q ss_pred eecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
++||+.+++.++++.+|.+|.+|+.|.++.||-..+|++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer----------------------------------------- 44 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER----------------------------------------- 44 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-----------------------------------------
Confidence 689999999999999999999999999999998767664
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEee
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp 438 (755)
+.++.||.+.|+++....+. ++++|+.|.+++|||+.+|+++..+.....|..+.|++
T Consensus 45 ---------------------lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~ 103 (327)
T KOG0643|consen 45 ---------------------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF 103 (327)
T ss_pred ---------------------eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc
Confidence 45678999999999999888 99999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCC-----CcEEEEEcCC-------Ce-EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 439 VDDNYFISGSID-----GKVRIWEVRR-------CQ-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 439 ~d~~~l~sgs~D-----g~V~iwdl~~-------~~-~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
++++++....+ +.|.++|++. .. ......+...++.+-|.|-+++|++|..+|.|.+||++++...
T Consensus 104 -~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~ 182 (327)
T KOG0643|consen 104 -GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL 182 (327)
T ss_pred -CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee
Confidence 88888776543 6799999983 23 4456667789999999999999999999999999999998664
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
.. ....|...|+.++++| +..++++++.|.+-++||..+...... .....+|++++++|-..+++.|+.
T Consensus 183 v~-------s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~Kt---y~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 183 VD-------SDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLKT---YTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred ee-------chhhhccccccccccC-CcceEEecccCccceeeeccceeeEEE---eeecccccceecccccceEEecCC
Confidence 32 2345778999999999 999999999999999999988654444 335678999999999888887764
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=3.3e-24 Score=209.00 Aligned_cols=267 Identities=19% Similarity=0.310 Sum_probs=212.2
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCee---eeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER---LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
..+..|++++.+.+|+|||.++|||+.|..|+|.|++..-. ..++.....
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~--------------------------- 158 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT--------------------------- 158 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc---------------------------
Confidence 45678999999999999999999999999999999863211 000000000
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe---EEEEEecCCc
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR---CLRVFSHNNY 430 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~---~~~~~~h~~~ 430 (755)
+..-..+.++..|..+|+++.|+|.. .|++++.|++|+++|..... ..++|....+
T Consensus 159 --------------------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~ 218 (430)
T KOG0640|consen 159 --------------------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEP 218 (430)
T ss_pred --------------------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccce
Confidence 00012367889999999999999988 99999999999999987543 3455567889
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE----eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~----~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
|.+|.|+| .|.+|+.|....++++||+.+.++.. -..|.+.|+++.|++.|++.++|+.||.|++||--+++++.
T Consensus 219 vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 219 VRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR 297 (430)
T ss_pred eeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH
Confidence 99999999 99999999999999999999988763 45688899999999999999999999999999998888765
Q ss_pred eeeEEecccccCC-CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC---CceEEEEEecCCCEEEE
Q 004410 507 QNQICLQGKKKLP-GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA---GSQMFATFTSDGKHVVS 582 (755)
Q Consensus 507 ~~~~~~~~~~~~~-~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~---~~v~~l~fspdg~~L~s 582 (755)
++. ..| +..|.+..|.. ++++|++.+.|..+++|.+.+..........+.. ..-+...|.....|++.
T Consensus 298 t~~-------~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~ 369 (430)
T KOG0640|consen 298 TIG-------NAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLF 369 (430)
T ss_pred HHH-------hhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEc
Confidence 432 233 45789999999 9999999999999999999886655544323222 23456778888888887
Q ss_pred EeC-CCcEEEEEcCCCCcc
Q 004410 583 PSE-DSNIYIWNYSNQDKS 600 (755)
Q Consensus 583 gs~-Dg~I~iWd~~~~~~~ 600 (755)
-.+ .+.+.-||-.+..+.
T Consensus 370 pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 370 PDEASNSLCSWDARTADRV 388 (430)
T ss_pred cccccCceeeccccchhhh
Confidence 654 467999999988743
No 93
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=3.9e-24 Score=221.28 Aligned_cols=257 Identities=18% Similarity=0.277 Sum_probs=198.0
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
.+.+|+..|.++++.|.|..|+||+.|.+|++||++........
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~------------------------------------ 205 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS------------------------------------ 205 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh------------------------------------
Confidence 47789999999999999999999999999999998654311000
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE------------
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF------------ 425 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~------------ 425 (755)
| +.+. ......|..++|++.+ .|++.+.....+|+|-...+.+...
T Consensus 206 ---------------f----r~l~--P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT 264 (641)
T KOG0772|consen 206 ---------------F----RQLQ--PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT 264 (641)
T ss_pred ---------------h----hccC--cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc
Confidence 0 0011 1234478999999999 8888888889999997655444332
Q ss_pred -ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----EEE---eccCCcceEEEEEccCCCeEEEEeCCCcEEEE
Q 004410 426 -SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVD---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (755)
Q Consensus 426 -~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~~---~~~~~~~V~~v~~spdg~~la~gs~dg~I~iw 497 (755)
+|...++|.+|+|.+...|++++.||++||||+...+ ++. ..+..-.++.++|+|||+.||+|+.||.|.+|
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 2889999999999888899999999999999997642 222 22334568999999999999999999999999
Q ss_pred ECCCCeEeeeeeEEecccccCCCC--CeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEE-eeeccCCceEEEEEe
Q 004410 498 DIKDNQLYQQNQICLQGKKKLPGK--RITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKA-SAFRVAGSQMFATFT 574 (755)
Q Consensus 498 D~~~~~~~~~~~~~~~~~~~~~~~--~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~-~~~~~~~~v~~l~fs 574 (755)
+...........+ ...|.. .|+++.|++ ++++|++-+.|+++++||++.....+.. ......-..+.++||
T Consensus 345 ~~~~~~v~p~~~v-----k~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 345 DKGSRTVRPVMKV-----KDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred ecCCcccccceEe-----eeccCCCCceeEEEecc-ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 9865544332222 334444 899999999 9999999999999999999876544322 113344567889999
Q ss_pred cCCCEEEEEeC------CCcEEEEEcCCCC
Q 004410 575 SDGKHVVSPSE------DSNIYIWNYSNQD 598 (755)
Q Consensus 575 pdg~~L~sgs~------Dg~I~iWd~~~~~ 598 (755)
|+.++|++|.. -|.+++||..+-+
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEecccee
Confidence 99999999864 5779999987765
No 94
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.3e-22 Score=226.60 Aligned_cols=208 Identities=16% Similarity=0.201 Sum_probs=160.1
Q ss_pred ceEecCCCCCEEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCe--------EEEEE-ecCCcEEEEEEeeCCCC-EEEEEe
Q 004410 381 LHEFQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDR--------CLRVF-SHNNYVTSVAFNPVDDN-YFISGS 448 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWdl~s~~--------~~~~~-~h~~~V~~i~fsp~d~~-~l~sgs 448 (755)
+..+.+|.+.|.+++|+|+ + +|++|+.|++|+|||+.++. ++..+ .|...|.+++|+| ++. +|++++
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaSgS 145 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCSSG 145 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEEEe
Confidence 5667899999999999996 4 99999999999999997642 22333 4899999999999 555 567999
Q ss_pred CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCe-----
Q 004410 449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI----- 523 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I----- 523 (755)
.|++|+|||+++++.+....+...|.+++|+|+|.+|++++.|+.|+|||++++..+..+. .|...+
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~--------gH~g~~~s~~v 217 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH--------IHDGGKNTKNI 217 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe--------cccCCceeEEE
Confidence 9999999999998876544567889999999999999999999999999999988765322 233332
Q ss_pred EEEEEcCCCCCEEEEEECCC----cEEEEECCcceeeEEE-eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 524 TGFQFSPSDPSKVIVTSADS----LVRVLCGENVVGKFKA-SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~Dg----~I~iwd~~~~~~~~~~-~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
....|++ ++.+|++++.|+ .|+|||+......... ....+.+.+......++|.++++|+.|+.|++|++..+.
T Consensus 218 ~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 218 WIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 3334567 778888888774 7999998864333222 112233444444445679999999999999999997664
No 95
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.4e-23 Score=222.04 Aligned_cols=321 Identities=14% Similarity=0.152 Sum_probs=234.7
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-----------CCEEEEEcCCCcEE
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-----------GQYLASGGEDGTVR 309 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-----------g~~LaSgs~Dg~I~ 309 (755)
+.|+|....|.+...|..++|||++...+.- ....+.-|...||.+.--|. ...++|++.|++||
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvg----k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVG----KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEecccccccc----ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 6799999999999999999999987654322 22345679999999987661 13589999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+|++..+..-..+.........+ .+.. .+...-+.......+..+......+...
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~-----------ki~y--------------~d~~~q~~~d~~~~~fdka~~s~~d~r~ 460 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLS-----------KIPY--------------EDSTQQIMHDASAGIFDKALVSTCDSRF 460 (1080)
T ss_pred Eeecccccccceeecccchhhhh-----------cCcc--------------ccCchhhhhhccCCcccccchhhcCccc
Confidence 99997643211111100000000 0000 0000000000000111222333445567
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeC--CCCEEEEEeCCCcEEEEEcCCCeEE-
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQVV- 464 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~--d~~~l~sgs~Dg~V~iwdl~~~~~~- 464 (755)
.|.+++.+|++ +|++|..-|+|+||++..-+.+..+ .|...|.|+.|+.. ..++|++++.|..|.|||+...-.+
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 79999999999 9999999999999999887766655 59999999999742 3468999999999999998632100
Q ss_pred -EeccC-------------------------------------------------CcceEEEEEccCCCeEEEEeCCCcE
Q 004410 465 -DYTDI-------------------------------------------------REIVSAVCYCPDGKGGIVGTMTGNC 494 (755)
Q Consensus 465 -~~~~~-------------------------------------------------~~~V~~v~~spdg~~la~gs~dg~I 494 (755)
.+.+| +..+..++..|..+++++++.|..|
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccce
Confidence 11111 2346677888888999999999999
Q ss_pred EEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe
Q 004410 495 RFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT 574 (755)
Q Consensus 495 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs 574 (755)
+|||+.+++....++- ...+.+....+...| .+.+|++...|.++.++|.....+..+. .+|...|+.+.|+
T Consensus 621 rif~i~sgKq~k~FKg-----s~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m--~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 621 RIFDIESGKQVKSFKG-----SRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQM--TGHSEAVTGVKFL 692 (1080)
T ss_pred EEEeccccceeeeecc-----cccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhh--cCcchheeeeeec
Confidence 9999999998765432 344667888999999 8999999999999999999887777766 8999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 575 SDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 575 pdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|.++|++.+.||.|.||.+....
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred ccchhheeecCCceEEEEECchhH
Confidence 999999999999999999998654
No 96
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=3.6e-23 Score=221.21 Aligned_cols=348 Identities=18% Similarity=0.210 Sum_probs=246.8
Q ss_pred ccccccceeeeeccCcceeecCCCC---eeEEeeCCCeEEEEECCCCcccc--------------cccccc---------
Q 004410 224 WLKKLGAMARIIDRHGSATLKPGDH---ELTLGQRMRRVRVHPVKKQSREL--------------SSLYTG--------- 277 (755)
Q Consensus 224 w~~~~~~~~~~~~~~~~~~~spdg~---~lasgs~dg~V~Vw~~~~~~~~~--------------~~~~~~--------- 277 (755)
-.+....+++|.|.+.+++|...+. +||+++.|..||||.+.....+- ..+...
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3456677899999999999986655 88999999999999764322000 000011
Q ss_pred -eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC--eeeeeeecCCCC-----CceeEEeeCCCCceeEEeecC
Q 004410 278 -QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH--ERLDGFDVQDTD-----PSCLYFTINHLSQLIPIDVDK 349 (755)
Q Consensus 278 -~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~ 349 (755)
..+.||++.|.++.|+|.+..|++++.|.++.||.-.+. --+......... -....|.++.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~----------- 328 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS----------- 328 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-----------
Confidence 124599999999999999999999999999999987654 222222222211 1122222222
Q ss_pred cceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CeEEEEE--
Q 004410 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-DRCLRVF-- 425 (755)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-~~~~~~~-- 425 (755)
...+..+..+....|-.+. ...-.+...+.||...|.+++|.|.| +|++.+.|.+-||+-.-. .+.-..+
T Consensus 329 -----~~ii~~g~~Gg~hlWkt~d-~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 329 -----NVIIAHGRTGGFHLWKTKD-KTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred -----CEEEEecccCcEEEEeccC-ccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc
Confidence 1112222223333333100 00012334567999999999999999 999999999999986541 1112222
Q ss_pred --ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-------------------------------------------
Q 004410 426 --SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR------------------------------------------- 460 (755)
Q Consensus 426 --~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~------------------------------------------- 460 (755)
.|...++|++|-+ ....|++|.....+|+|+...
T Consensus 403 PQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred cccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 2999999999987 678899999999999997641
Q ss_pred Ce----------------------------------EEEeccCCcceEEEEEccCCCeEEEEeCCCc-----EEEEECCC
Q 004410 461 CQ----------------------------------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGN-----CRFYDIKD 501 (755)
Q Consensus 461 ~~----------------------------------~~~~~~~~~~V~~v~~spdg~~la~gs~dg~-----I~iwD~~~ 501 (755)
+. +..+.+|...|.+++.+|+|+.+|+++.... |++|+..+
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence 00 0013456678999999999999999987543 89999988
Q ss_pred CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce-eeEE-EeeeccCCceEEEEEecCCCE
Q 004410 502 NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV-GKFK-ASAFRVAGSQMFATFTSDGKH 579 (755)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~-~~~~-~~~~~~~~~v~~l~fspdg~~ 579 (755)
...++. ...|.-.|+.++|+| |+++|++.+.|.++.+|...+.. ..+. .....|...|.++.|+|++++
T Consensus 562 W~~~~~--------L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 562 WLQVQE--------LEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred hhhhhe--------ecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence 765542 345778999999999 99999999999999999865422 1111 113678889999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCC
Q 004410 580 VVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 580 L~sgs~Dg~I~iWd~~~~~ 598 (755)
++|+|.|.+|++|......
T Consensus 633 FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eEEecCCceEEEEeccCch
Confidence 9999999999999998773
No 97
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.9e-22 Score=219.70 Aligned_cols=345 Identities=18% Similarity=0.259 Sum_probs=261.0
Q ss_pred ccceeeeeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 228 LGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
+.+++.-..+|++++|..||+ .||+|+..|.+-+||+++.... .+...+|.+.|..+.|-|....|+|++.|.
T Consensus 237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~------~v~~nah~~sv~~~~fl~~epVl~ta~~Dn 310 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI------NVTRNAHYGSVTGATFLPGEPVLVTAGADN 310 (910)
T ss_pred EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee------eeeeccccCCcccceecCCCceEeeccCCC
Confidence 333443346788899999998 6778888899999999876532 234568999999999999999999999999
Q ss_pred cEEEEEccCCe----eeeeeecCCCCCceeEEeeCCCCceeEEeecC-------------cceee---------------
Q 004410 307 TVRVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-------------EKIDK--------------- 354 (755)
Q Consensus 307 ~I~vWdv~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~--------------- 354 (755)
.+++|=..++. .++.-..|..++.|+.|.......+....-+. .....
T Consensus 311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~ 390 (910)
T KOG1539|consen 311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST 390 (910)
T ss_pred ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence 99998666443 34444566677777777644333222221111 00000
Q ss_pred ----------------------eeeeeecCCceEEEeCCcceeccCccc--eE-----ecCCCCCEEEEEEcCCC-eEEE
Q 004410 355 ----------------------TKSLRKSSDLTCVVLPPKVFRLLEKPL--HE-----FQGHSSEVLDLSWSKNG-FLLS 404 (755)
Q Consensus 355 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~gh~~~V~~l~~s~~~-~L~s 404 (755)
........+..+. +|+...+.+ +. ++.....+++++.++.| +.+.
T Consensus 391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~-----tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I 465 (910)
T KOG1539|consen 391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAY-----TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI 465 (910)
T ss_pred hhhcCCcceeeecccchhhhhcceeEEecCcceEE-----EEeccCcccccEEecCccccccCcceEEEEEeccCceEEE
Confidence 0000011111112 222222222 11 12233678999999999 7788
Q ss_pred EeCCCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc
Q 004410 405 SSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (755)
Q Consensus 405 ~s~Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp 480 (755)
|+..|+|-+|++++|-....| .|..+|+.++... .++.+++++.+|.+.+||..++..+........++++.++.
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR 544 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee
Confidence 899999999999999999888 4999999999987 88899999999999999999999887777888999999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe
Q 004410 481 DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 481 dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 560 (755)
....++++..|-.|+++|+.+.+.... ...|+.+|++++|+| |+++|++++.|++|++||+.+....-.
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~--------f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~-- 613 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVRE--------FWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDG-- 613 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHH--------hhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeee--
Confidence 999999999999999999998887653 445889999999999 999999999999999999887544332
Q ss_pred eeccCCceEEEEEecCCCEEEEEeCC-CcEEEEEcCC
Q 004410 561 AFRVAGSQMFATFTSDGKHVVSPSED-SNIYIWNYSN 596 (755)
Q Consensus 561 ~~~~~~~v~~l~fspdg~~L~sgs~D-g~I~iWd~~~ 596 (755)
.....+.+++.|+|+|.+|||+..| .-|++|--..
T Consensus 614 -~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 614 -LLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred -EecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 3456788999999999999999999 6699997543
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=8.6e-24 Score=217.65 Aligned_cols=278 Identities=20% Similarity=0.331 Sum_probs=229.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcc--cccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~--~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
|-+++++...+.++||++ |.|+|||+..... .++.+. ......-|.++.+.|||+.|++|++-.++.|||+..
T Consensus 422 VcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLd----cl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLD----CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred EEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccccc----ccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 444889999999999887 6799999875421 112221 223456799999999999999999999999999976
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
....- ..++....-...+|+
T Consensus 497 pTpri------------------------------------------------------------kaeltssapaCyALa 516 (705)
T KOG0639|consen 497 PTPRI------------------------------------------------------------KAELTSSAPACYALA 516 (705)
T ss_pred CCcch------------------------------------------------------------hhhcCCcchhhhhhh
Confidence 53210 011222233456788
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcce
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV 473 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V 473 (755)
.+||. ..+++..||.|.|||+.....++.|. |.+.+.||.+++ +|..|.+|+.|++||-||++.+..+...+....|
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 99998 77888899999999999999999995 999999999999 9999999999999999999999988888888999
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 474 SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
.++.++|++.+|++|-.++.+.|.........+ ...|..-|.++.|.+ -++++++.+.|+.+..|...-.
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp~kyq---------lhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCcccee---------ecccccEEEEEEecc-cCceeeecCchhhhhhccCccc
Confidence 999999999999999999999988887655432 234677899999999 9999999999999999998776
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
...|. .....+|.++.+|.|.+||+||+.|....||.+
T Consensus 666 asiFq---skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 666 ASIFQ---SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cceee---ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 66665 346679999999999999999999999888875
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.4e-23 Score=223.49 Aligned_cols=240 Identities=21% Similarity=0.327 Sum_probs=206.7
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeec-ccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
.+.++++.|+++|.+||+|..+|.|.|||.....+ ...+.+ |...|-+++|. +..|.+|+.|+.|..+|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-------~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-------TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-------cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 46688899999999999999999999999764432 234566 99999999997 778999999999999998
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
...+.. ...+.+|...|..
T Consensus 288 R~~~~~-------------------------------------------------------------~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 288 RISQHV-------------------------------------------------------------VSTLQGHRQEVCG 306 (484)
T ss_pred ecchhh-------------------------------------------------------------hhhhhcccceeee
Confidence 765421 1126789999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEE--eCCCcEEEEEcCCCeEEEeccC
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISG--SIDGKVRIWEVRRCQVVDYTDI 469 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sg--s~Dg~V~iwdl~~~~~~~~~~~ 469 (755)
++|++++ +|++|+.|+.+.|||......+..+ .|...|.+++|+|....+||+| +.|+.|++||..++..+.....
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence 9999999 9999999999999999766666665 6999999999999889999996 4799999999999999999999
Q ss_pred CcceEEEEEccCCCeEEE--EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 470 REIVSAVCYCPDGKGGIV--GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~--gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
...|..|.|++..+.|++ |..++.|.||+..+.+.+.. ...|..+|..++++| |+..|++++.|.++++
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~--------l~gH~~RVl~la~SP-dg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE--------LLGHTSRVLYLALSP-DGETIVTGAADETLRF 457 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee--------ecCCcceeEEEEECC-CCCEEEEecccCcEEe
Confidence 999999999999887777 55677899999988655432 455788999999999 8999999999999999
Q ss_pred EECCcc
Q 004410 548 LCGENV 553 (755)
Q Consensus 548 wd~~~~ 553 (755)
|+.-+.
T Consensus 458 w~~f~~ 463 (484)
T KOG0305|consen 458 WNLFDE 463 (484)
T ss_pred ccccCC
Confidence 997653
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.9e-23 Score=214.62 Aligned_cols=256 Identities=20% Similarity=0.318 Sum_probs=205.4
Q ss_pred cccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 282 AHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 282 ~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
-|.+.|+.++.-|.. ..+|+.+..+.|.|||..+.........
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~------------------------------------ 165 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG------------------------------------ 165 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc------------------------------------
Confidence 499999999999965 5777888899999999865432110000
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeE-------EEEE-ecCCc
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-------LRVF-SHNNY 430 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~-------~~~~-~h~~~ 430 (755)
.-.|-..+.||...-.+|+|++.. .|++++.|++|++||+..... ...+ .|...
T Consensus 166 ----------------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~ 229 (422)
T KOG0264|consen 166 ----------------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDV 229 (422)
T ss_pred ----------------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcc
Confidence 013455788999988899999976 999999999999999975433 2233 49999
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCC--CeEE-EeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRR--CQVV-DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~--~~~~-~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
|..++|+|.+.++|++++.|+.+.|||+++ .+.. ....|...|.|++|+| ++..||+|+.|++|.+||+++.....
T Consensus 230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l 309 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL 309 (422)
T ss_pred eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc
Confidence 999999999999999999999999999995 3333 4677899999999999 67788999999999999999765421
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceee------------EEEeeeccCCceEEEEEe
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGK------------FKASAFRVAGSQMFATFT 574 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~------------~~~~~~~~~~~v~~l~fs 574 (755)
.....|...|..+.|+|.....|++++.|+.+.|||+...... +.+.-.+|...|..+.|.
T Consensus 310 -------h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 310 -------HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred -------eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCC
Confidence 1244578899999999998999999999999999997753322 123336899999999999
Q ss_pred cCCCE-EEEEeCCCcEEEEEcCC
Q 004410 575 SDGKH-VVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 575 pdg~~-L~sgs~Dg~I~iWd~~~ 596 (755)
|+..+ |++.++|+.+.||++..
T Consensus 383 p~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 383 PNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCeEEEEecCCceEEEeeccc
Confidence 98876 67889999999999874
No 101
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=3.6e-22 Score=206.35 Aligned_cols=343 Identities=18% Similarity=0.189 Sum_probs=247.7
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
.|.|++|.++|.. ++|..+|.|.||+..... ..+...+|.+.|.++..-.+|.+| +|+.|..|..|| ..-
T Consensus 248 ~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~-------~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y 317 (626)
T KOG2106|consen 248 FVLCVTFLENGDV-ITGDSGGNILIWSKGTNR-------ISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD-DNY 317 (626)
T ss_pred EEEEEEEcCCCCE-EeecCCceEEEEeCCCce-------EEeEeeecCCceEEEEEecCccEe-ecCccceEEecc-ccc
Confidence 4677999999985 789999999999974332 223344999999999999999755 599999999999 444
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+.++....++..........+... ++.+.....++.- .+...-.....+|......++.
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~d----------------i~vGTtrN~iL~G-----t~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGD----------------ILVGTTRNFILQG-----TLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred cccccccCchhcCCeeEEecCCCc----------------EEEeeccceEEEe-----eecCCceEEEEecccceeeEEc
Confidence 455555554433222222222222 1111111111111 1111223456789999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEE
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~ 475 (755)
+|+. .+++++.|+.++||+ ..+++-......++.|+.|+| .+ .++.|+..|...+.|.++...++.....+++++
T Consensus 377 hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~ 452 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSV 452 (626)
T ss_pred CCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceEE
Confidence 9998 999999999999999 666666666788999999999 77 999999999999999999888877666999999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce-
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV- 554 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~- 554 (755)
+.|+|+|.+||+|+.|+.|+||-+..+...... . .+.++..|+.+.|++ |++++.+-+.|-.|..|......
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r----~--~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~ 525 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR----V--GKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWKPSECKQ 525 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE----e--eeecCceeEEeeecC-CCceEEeccCceEEEEEccccCcc
Confidence 999999999999999999999998765443221 1 223448999999999 99999999999999999533211
Q ss_pred -------------ee--EEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcccCCCccccceeeeecCCeE
Q 004410 555 -------------GK--FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSKSIWSCESFLSHNVS 619 (755)
Q Consensus 555 -------------~~--~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~f~~~~~~ 619 (755)
+. |......+...|..++-+.+.+.+++|.+.|.|++|...-.+ .......+..+.+|...
T Consensus 526 ~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s----~rA~~he~~ghs~~vt~ 601 (626)
T KOG2106|consen 526 ITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSS----PRAPSHEYGGHSSHVTN 601 (626)
T ss_pred cceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCC----CcccceeeccccceeEE
Confidence 11 111112234456667778889999999999999999876433 22223344445566666
Q ss_pred EEEcCC
Q 004410 620 VAIPWV 625 (755)
Q Consensus 620 va~~w~ 625 (755)
|++.|.
T Consensus 602 V~Fl~~ 607 (626)
T KOG2106|consen 602 VAFLCK 607 (626)
T ss_pred EEEeeC
Confidence 777664
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=3.4e-22 Score=217.80 Aligned_cols=333 Identities=18% Similarity=0.230 Sum_probs=238.0
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCC-EEEEEcCCCcE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTV 308 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~-~LaSgs~Dg~I 308 (755)
.+.++.++++++.=+|--..+|.|..+|+|.|++++...... +++.-.+.|+.+.|..||+ .||+|+..|.+
T Consensus 197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~-------sFk~d~g~VtslSFrtDG~p~las~~~~G~m 269 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM-------SFKQDWGRVTSLSFRTDGNPLLASGRSNGDM 269 (910)
T ss_pred EecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE-------EEEccccceeEEEeccCCCeeEEeccCCceE
Confidence 445556778888888999999999999999999988665422 2443359999999999997 56777778999
Q ss_pred EEEEccCCeeeeeee-cCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 309 RVWKVIEHERLDGFD-VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
-+||++..+....+. .+...+....|.+...- . ...+.|....+|--...+-....++.-.||
T Consensus 270 ~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epV--l--------------~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH 333 (910)
T KOG1539|consen 270 AFWDLEKKKLINVTRNAHYGSVTGATFLPGEPV--L--------------VTAGADNSLKVWVFDSGDGVPRLLRSRGGH 333 (910)
T ss_pred EEEEcCCCeeeeeeeccccCCcccceecCCCce--E--------------eeccCCCceeEEEeeCCCCcchheeeccCC
Confidence 999999888776655 33344443333333211 1 111111111111111111112223334455
Q ss_pred CCCEEEEEEc-CCC-eEEEEeCCCcEEEE---------------------------------------------------
Q 004410 388 SSEVLDLSWS-KNG-FLLSSSADKTVRLW--------------------------------------------------- 414 (755)
Q Consensus 388 ~~~V~~l~~s-~~~-~L~s~s~Dg~V~iW--------------------------------------------------- 414 (755)
..+..++.|. .++ .+++++.|++.+.+
T Consensus 334 s~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N 413 (910)
T KOG1539|consen 334 SAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN 413 (910)
T ss_pred CCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence 5555555555 233 55555555554444
Q ss_pred --------------eCCCCeE-EEEEecC------CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe----ccC
Q 004410 415 --------------QVGIDRC-LRVFSHN------NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY----TDI 469 (755)
Q Consensus 415 --------------dl~s~~~-~~~~~h~------~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~----~~~ 469 (755)
+.+.... ..++.+. ..+++++.++ .|++.+.|+..|.|-+|++.++..... ..|
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah 492 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH 492 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence 4333322 2223333 6789999999 999999999999999999999987743 479
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
..+|+.++...-++.+++++.+|.+.+||..+..++.... -+..++++..+. ....++++..|-.|+++|
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~---------l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR---------LGSSITGIVYHR-VSDLLAIALDDFSIRVVD 562 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec---------cCCCcceeeeee-hhhhhhhhcCceeEEEEE
Confidence 9999999999888999999999999999999887654322 245778888887 778899999999999999
Q ss_pred CCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..+..-.... .+|...|++++|||||++|++++.|++|++||+.++.
T Consensus 563 ~~t~kvvR~f--~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 563 VVTRKVVREF--WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred chhhhhhHHh--hccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 8875444333 6799999999999999999999999999999999987
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=6.7e-23 Score=219.32 Aligned_cols=278 Identities=20% Similarity=0.329 Sum_probs=220.9
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEE-EEEec-CCCEEEEEcCCCc
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-MKFSL-DGQYLASGGEDGT 307 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~-l~fsp-dg~~LaSgs~Dg~ 307 (755)
.+.+|...+..+++.+. ..++++++||+++||+-..... .....+.+|.+.|.+ +++-+ ++..|++|+.|++
T Consensus 9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~-----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQY-----LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred EeccCccchheeEecCC-eEEeecCCCCceeeeeccCccc-----ccceecccCcceeeccceeccccCcceEeecccce
Confidence 45667766766665544 4788999999999999643322 122457789998888 88875 5567999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|.+|..... .|+..+.+|
T Consensus 83 i~v~~~~~~--------------------------------------------------------------~P~~~LkgH 100 (745)
T KOG0301|consen 83 IIVFKLSQA--------------------------------------------------------------EPLYTLKGH 100 (745)
T ss_pred EEEEecCCC--------------------------------------------------------------Cchhhhhcc
Confidence 999987544 356778999
Q ss_pred CCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 388 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
.+.|.++....++.+++||.|.++++|-. +++...+ +|...|.+++.-| .+ .+++|+.|.+|++|.- ......+
T Consensus 101 ~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~-~~~l~tf 175 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG-GTLLKTF 175 (745)
T ss_pred ccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC-Cchhhhh
Confidence 99999999888889999999999999965 3444445 5999999999998 44 8999999999999987 2233367
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
.+|.+.|..+++-+++ .|++++.||.|++|++....+.. ...|..-|+++...+ +...+++++.|++++
T Consensus 176 ~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~---------~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 176 SGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLE---------MHGHTNFVYSISMAL-SDGLIVSTGEDRTLR 244 (745)
T ss_pred ccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeee---------eeccceEEEEEEecC-CCCeEEEecCCceEE
Confidence 8899999999998874 68899999999999995544432 445778899999777 789999999999999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
||+.....+.... ....|+++.+-++|. |++|+.||.||||....
T Consensus 245 iW~~~e~~q~I~l----PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 245 IWKKDECVQVITL----PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EeecCceEEEEec----CccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 9998844443332 334899999988887 77888999999999873
No 104
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=2.1e-23 Score=214.22 Aligned_cols=264 Identities=18% Similarity=0.272 Sum_probs=205.1
Q ss_pred eeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCccccc---ccccceeeecccccEEEEEEecCC-CEEEEEcCCCcE
Q 004410 234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELS---SLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTV 308 (755)
Q Consensus 234 ~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~---~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I 308 (755)
|...|+-+..-|+.. ++|+++..+.|.|||+.+...... ...+.-.|.+|++.=..|.|++.. -+|++++.|++|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 345566677778776 667788899999999876543222 223344789999988899999953 589999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
++||+....... ....+...+.+|.
T Consensus 203 ~lwdi~~~~~~~-------------------------------------------------------~~~~p~~~~~~h~ 227 (422)
T KOG0264|consen 203 CLWDINAESKED-------------------------------------------------------KVVDPKTIFSGHE 227 (422)
T ss_pred EEEeccccccCC-------------------------------------------------------ccccceEEeecCC
Confidence 999996543210 0013456688999
Q ss_pred CCEEEEEEcCCC--eEEEEeCCCcEEEEeCCC--CeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC--
Q 004410 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-- 461 (755)
Q Consensus 389 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s--~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-- 461 (755)
..|.+++|++-. .|++++.|+.+.|||+++ .++.+.. .|.+.|.|++|+|.++.+||+|+.|++|++||+|+-
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK 307 (422)
T ss_pred cceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence 999999999966 899999999999999995 4444444 499999999999999999999999999999999974
Q ss_pred eEEEeccCCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeee------eeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 462 QVVDYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQ------NQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~------~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
.+..+..|...|..|.|+|+ ...||+++.|+.+.+||+..-...+. .+..+.-....|...|..+.|+|..+.
T Consensus 308 ~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW 387 (422)
T KOG0264|consen 308 PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW 387 (422)
T ss_pred CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence 34478899999999999995 56788899999999999974322211 000111123457788999999998888
Q ss_pred EEEEEECCCcEEEEECCc
Q 004410 535 KVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 535 ~l~s~s~Dg~I~iwd~~~ 552 (755)
.|++.+.|+.++||....
T Consensus 388 ~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 388 TIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEEecCCceEEEeeccc
Confidence 999999999999998764
No 105
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=2.9e-21 Score=199.63 Aligned_cols=331 Identities=18% Similarity=0.216 Sum_probs=257.5
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecc-cccEEEEEEecCCCEEEEEcCCCc
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H-~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
..+++..+.+..+.|+|.+..|+....-+.+..|+..++...-. ...+..+ +..|.||+|.++|. ++||..+|.
T Consensus 194 ~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~----~~~fek~ekk~Vl~v~F~engd-viTgDS~G~ 268 (626)
T KOG2106|consen 194 GPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR----QGIFEKREKKFVLCVTFLENGD-VITGDSGGN 268 (626)
T ss_pred CcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE----eeccccccceEEEEEEEcCCCC-EEeecCCce
Confidence 34555556677799999999888888889999999876542111 1112222 26799999999997 679999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|.||+..+.+..+....++..+.++....++ .++.+..|..+..|+.....+.+. ++...
T Consensus 269 i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-----------------tllSGgKDRki~~Wd~~y~k~r~~---elPe~ 328 (626)
T KOG2106|consen 269 ILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-----------------TLLSGGKDRKIILWDDNYRKLRET---ELPEQ 328 (626)
T ss_pred EEEEeCCCceEEeEeeecCCceEEEEEecCc-----------------cEeecCccceEEeccccccccccc---cCchh
Confidence 9999998887777766776666666554333 334577888888888544333222 22334
Q ss_pred CCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec
Q 004410 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 388 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~ 467 (755)
.+.|..++=... -|+.|...+.|.-=.++.+-.+.++.|.+....++.+| +.++|++++.|+.|++|+ ..++....
T Consensus 329 ~G~iRtv~e~~~-di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~ 404 (626)
T KOG2106|consen 329 FGPIRTVAEGKG-DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTK 404 (626)
T ss_pred cCCeeEEecCCC-cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEE
Confidence 566777664443 37788888888888889998899999999999999999 999999999999999999 55666556
Q ss_pred cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
....++.++.|+|.| .+|+|+..|...+.|..+..++.. .. .+.+++++.|+| ++.++++|+.|+.|+|
T Consensus 405 ~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~--------~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 405 IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI--------HT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYI 473 (626)
T ss_pred EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE--------Ee-cCCceEEEEEcC-CCCEEEEecCCCeEEE
Confidence 667889999999999 999999999999999999766542 11 267999999999 9999999999999999
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
|.......++......+..+|+.+.||+|++||.+-+.|-.|..| .....+.
T Consensus 474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW-~~~~~~~ 525 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW-KPSECKQ 525 (626)
T ss_pred EEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE-ccccCcc
Confidence 998876666655444455899999999999999999999999999 4444433
No 106
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.8e-22 Score=197.85 Aligned_cols=300 Identities=19% Similarity=0.300 Sum_probs=209.4
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee----eeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD----GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
..|++|.+.|++|+|+.||++|||++.|++|+||++.+..... ........+..+.|.++....++.+. ...++.
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~-~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK-RGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc-cCCEEE
Confidence 3578999999999999999999999999999999997643211 11223346667777777666555444 333322
Q ss_pred eeeeeeecCCce----EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-c
Q 004410 354 KTKSLRKSSDLT----CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-H 427 (755)
Q Consensus 354 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h 427 (755)
.... ....++. .+-|+. ++--..|.-.|..+-...++ +|++++.|.+|.||++. |+.+..+. .
T Consensus 159 vyk~-~K~~dG~~~~~~v~~D~---------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 159 VYKL-VKKTDGSGSHHFVHIDN---------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEEe-eecccCCCCcccccccc---------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 2222 1111211 111111 11224577777777777777 99999999999999998 88877774 4
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC---CC------eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEE
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR---RC------QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~---~~------~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD 498 (755)
...-+..+++| +|+++++++..-.|++|.+- ++ ++..+.+|...|++++|+++...+++.+.||+++|||
T Consensus 228 q~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 228 QSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred cccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 45567788999 99999999999999999973 22 2346889999999999999999999999999999999
Q ss_pred CCCCeEeeeeeEEecc---cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 499 IKDNQLYQQNQICLQG---KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 499 ~~~~~~~~~~~~~~~~---~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
+.-.....+....+.. .....+..-..+..+| .+..|++ +....++++..++....... ...|...|.+++|++
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~-s~gs~l~~~~se~g~~~~~~-e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAV-SFGSDLKVFASEDGKDYPEL-EDIHSTTISSISYSS 383 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEe-ecCCceEEEEcccCccchhH-HHhhcCceeeEEecC
Confidence 8743222111111110 0112233444899999 6665554 45678899987764332222 245889999999999
Q ss_pred CCCEEEEEeCCCcEEEEEc
Q 004410 576 DGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 576 dg~~L~sgs~Dg~I~iWd~ 594 (755)
+|+|+++++ |..+++..-
T Consensus 384 ~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 384 DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred CCcEEeeec-ceeeeeecC
Confidence 999999997 467777763
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.5e-21 Score=204.71 Aligned_cols=275 Identities=14% Similarity=0.192 Sum_probs=199.7
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEE-EEEcCCCcEEEEEccCCeeeeeeecC
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
+..+++++.|+.|++|+..+.. ..+.+..|. .+.+++|+|+|+.| ++++.++.|++||+.+++....+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~-------~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--- 69 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE-------VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--- 69 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc-------eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec---
Confidence 3567889999999999976543 223444444 46789999999976 56778999999998776533211
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL- 403 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~- 403 (755)
..+. .+..++|+|++ .++
T Consensus 70 -----------------------------------------------------------~~~~-~~~~~~~~~~g~~l~~ 89 (300)
T TIGR03866 70 -----------------------------------------------------------PSGP-DPELFALHPNGKILYI 89 (300)
T ss_pred -----------------------------------------------------------cCCC-CccEEEECCCCCEEEE
Confidence 1121 23567899998 554
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC-cEEEEEcCCCeEEEeccCCcceEEEEEccCC
Q 004410 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQVVDYTDIREIVSAVCYCPDG 482 (755)
Q Consensus 404 s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg-~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg 482 (755)
+++.++.|++||+.+.+.+..+.+...+.+++|+| ++.+++++..++ .+.+||..+++..........+..++|+|+|
T Consensus 90 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 168 (300)
T TIGR03866 90 ANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADG 168 (300)
T ss_pred EcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCC
Confidence 44568999999999998888887666688999999 999999888775 4678899988776543444566889999999
Q ss_pred CeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE-EECCCcEEEEECCcceeeEEEe
Q 004410 483 KGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV-TSADSLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 483 ~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s-~s~Dg~I~iwd~~~~~~~~~~~ 560 (755)
+.|++++ .++.|++||+.+++..........+.. ........+.|+| +++++++ ...++.|.+||..+......
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~-- 244 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDY-- 244 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEE--
Confidence 9886654 589999999999876554332111100 0112345688999 6666544 45677899999876543322
Q ss_pred eeccCCceEEEEEecCCCEEEEE-eCCCcEEEEEcCCCC
Q 004410 561 AFRVAGSQMFATFTSDGKHVVSP-SEDSNIYIWNYSNQD 598 (755)
Q Consensus 561 ~~~~~~~v~~l~fspdg~~L~sg-s~Dg~I~iWd~~~~~ 598 (755)
..+...+.+++|+|+|++|+++ +.+|.|++||+.+++
T Consensus 245 -~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 245 -LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred -EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 2234578899999999999886 468999999999876
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=1.2e-22 Score=228.51 Aligned_cols=256 Identities=21% Similarity=0.306 Sum_probs=212.0
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCC-----------CcccccccccceeeecccccEEEEEEec
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----------QSRELSSLYTGQEFLAHEGSILTMKFSL 294 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~-----------~~~~~~~~~~~~~l~~H~~~V~~l~fsp 294 (755)
+++-++..|...+.|+.|+|||++||+|++|+.|.||.... +............+.+|.+.|..++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 45566777888899999999999999999999999999873 1223334445667899999999999999
Q ss_pred CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 295 dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
++.+||+++.|++|.||+..+.+.
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~-------------------------------------------------------- 163 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFEL-------------------------------------------------------- 163 (942)
T ss_pred CccEEEEecccceEEEEcccccee--------------------------------------------------------
Confidence 999999999999999999876643
Q ss_pred eccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-------cCCcEEEEEEeeCCCCEEEE
Q 004410 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDDNYFIS 446 (755)
Q Consensus 375 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-------h~~~V~~i~fsp~d~~~l~s 446 (755)
+..+.+|.+.|..+.|.|-| +|++-+.|++|+||++....+.+.+. ....+..+.|+| ||.+|++
T Consensus 164 ------~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las 236 (942)
T KOG0973|consen 164 ------LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLAS 236 (942)
T ss_pred ------eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecc
Confidence 45678999999999999999 99999999999999988777776663 456789999999 9999998
Q ss_pred EeC----CCcEEEEEcCCCeE-EEeccCCcceEEEEEccC-----CC------------eEEEEeCCCcEEEEECCCCeE
Q 004410 447 GSI----DGKVRIWEVRRCQV-VDYTDIREIVSAVCYCPD-----GK------------GGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 447 gs~----Dg~V~iwdl~~~~~-~~~~~~~~~V~~v~~spd-----g~------------~la~gs~dg~I~iwD~~~~~~ 504 (755)
... -.++.|.+-.+.++ +.+.+|..++.++.|+|. .+ .+|+|+.|++|.||.....+.
T Consensus 237 ~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 237 PNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred hhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 642 23578888777664 478999999999999981 12 678899999999999976665
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
+.. ........|.+++|+| ||..|++++.||+|.++....
T Consensus 317 l~v-------i~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 317 LFV-------IHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhh-------hhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcch
Confidence 432 2344568999999999 999999999999999998554
No 109
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.5e-22 Score=206.01 Aligned_cols=264 Identities=19% Similarity=0.272 Sum_probs=214.7
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
.+..|.-+|.+|+++||+.++++++.|++|.=|++.++.....+-... .+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev----------------------------- 186 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EV----------------------------- 186 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hh-----------------------------
Confidence 356799999999999999999999999999999999887442111000 00
Q ss_pred eecCCceEEEeCCcceeccCccceEe-cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEE
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVA 435 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~ 435 (755)
......++..- .+|...|.+++.++|| +|++|+.|..|.||+.++.+.++.+. |.+.|.+++
T Consensus 187 ---------------~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~ 251 (479)
T KOG0299|consen 187 ---------------LKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLA 251 (479)
T ss_pred ---------------hhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeee
Confidence 00001111111 4899999999999999 99999999999999999999999984 999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
|-. ..+.+++++.|.+|++|++.....+ .+.+|+..|..|....-++.+-+|+.|.++++|++.....+
T Consensus 252 fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql--------- 321 (479)
T KOG0299|consen 252 FRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL--------- 321 (479)
T ss_pred eec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee---------
Confidence 987 7888999999999999999987776 68999999999999999999999999999999999543322
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeec----------cCCceEEEEEecCCCEEEEEe
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFR----------VAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~----------~~~~v~~l~fspdg~~L~sgs 584 (755)
.+..+...+-+++|- +...+++|+.+|.|.+|++......+...... +...|++++..|...++++|+
T Consensus 322 ifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 322 IFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred eeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence 133456789999998 56889999999999999988766655442111 123789999999999999999
Q ss_pred CCCcEEEEEcCCCCc
Q 004410 585 EDSNIYIWNYSNQDK 599 (755)
Q Consensus 585 ~Dg~I~iWd~~~~~~ 599 (755)
.+|.|++|.+..+-+
T Consensus 400 ~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGLR 414 (479)
T ss_pred CCCceEEEEecCCcc
Confidence 999999999998853
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8.6e-23 Score=193.59 Aligned_cols=252 Identities=21% Similarity=0.328 Sum_probs=202.4
Q ss_pred ecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
..|++.|..+...--|+.||||+.|++|+|+.+.....
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 46999999999988999999999999999999866532
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEE
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK--NG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSV 434 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~--~~-~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i 434 (755)
.+++.++.||.++|..++|.. -| .|++++.||.|.||.-.+++-.+.. .|...|+++
T Consensus 46 -----------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV 108 (299)
T KOG1332|consen 46 -----------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSV 108 (299)
T ss_pred -----------------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceee
Confidence 134678899999999999976 45 9999999999999998888655444 399999999
Q ss_pred EEeeCC-CCEEEEEeCCCcEEEEEcCCC-eE---EEeccCCcceEEEEEccC---C-----------CeEEEEeCCCcEE
Q 004410 435 AFNPVD-DNYFISGSIDGKVRIWEVRRC-QV---VDYTDIREIVSAVCYCPD---G-----------KGGIVGTMTGNCR 495 (755)
Q Consensus 435 ~fsp~d-~~~l~sgs~Dg~V~iwdl~~~-~~---~~~~~~~~~V~~v~~spd---g-----------~~la~gs~dg~I~ 495 (755)
+|.|.+ +-.|++++.||+|.|.+.+.. .- .-...|.-.|++++|.|- | +.|++|+.|..|+
T Consensus 109 ~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk 188 (299)
T KOG1332|consen 109 AWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK 188 (299)
T ss_pred cccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence 999943 346889999999999998865 21 124568888999999995 5 6799999999999
Q ss_pred EEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC---CEEEEEECCCcEEEEECCcceeeEEEe-eeccCCceEEE
Q 004410 496 FYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP---SKVIVTSADSLVRVLCGENVVGKFKAS-AFRVAGSQMFA 571 (755)
Q Consensus 496 iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~---~~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~~v~~l 571 (755)
||+...+.-.. ......|...|..++|.|..+ ..|++++.||+|.||.........+.. +......+..+
T Consensus 189 iW~~~~~~w~~------e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 189 IWKFDSDSWKL------ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV 262 (299)
T ss_pred eeecCCcchhh------hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE
Confidence 99998874322 222455778999999999543 589999999999999866432333222 13356679999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 572 TFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 572 ~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+||..|..|+.++.|+.|.+|.-+..
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEeCCC
Confidence 99999999999999999999986543
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.1e-23 Score=222.00 Aligned_cols=291 Identities=17% Similarity=0.260 Sum_probs=226.6
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeee---cccccEEEEEEec-CCCEEEEEcCCCcEEEEE
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL---AHEGSILTMKFSL-DGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~---~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWd 312 (755)
...+++..++-..++.++.. .++||.+........ +...+. .-.-.+..++|.. +.++|||++..|.|.+||
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~---~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEK---CNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcc---eeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 34557788888887777664 577777664432221 111111 1112456678875 568999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+..... .+.+..|..|...|+
T Consensus 117 lnk~~r-----------------------------------------------------------nk~l~~f~EH~Rs~~ 137 (839)
T KOG0269|consen 117 LNKSIR-----------------------------------------------------------NKLLTVFNEHERSAN 137 (839)
T ss_pred cCcccc-----------------------------------------------------------chhhhHhhhhcccee
Confidence 864210 233556788999999
Q ss_pred EEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--Eec
Q 004410 393 DLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYT 467 (755)
Q Consensus 393 ~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~ 467 (755)
++.|++.. +|++|+.||+|++||++..+...++. ....|..++|+|..+++|+++...|.|++||++..... ++.
T Consensus 138 ~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~ 217 (839)
T KOG0269|consen 138 KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT 217 (839)
T ss_pred eeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh
Confidence 99999977 99999999999999999988877774 77889999999999999999999999999999975433 688
Q ss_pred cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC--CCcE
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA--DSLV 545 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~--Dg~I 545 (755)
.|.+.|.++.|+|++.+||+|+.|+.|+|||+.+.+......+ ....++..+.|-|.....|++++. |-.|
T Consensus 218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV 290 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-------NTIAPVGRVKWRPARSYHLATCSMVVDTSV 290 (839)
T ss_pred cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-------eecceeeeeeeccCccchhhhhhccccceE
Confidence 9999999999999999999999999999999997665433222 134689999999977788888764 7889
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTS-DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|||+......+.. ...|...++.++|.. |-..|.+++.||.|..-.+++..
T Consensus 291 ~VWDvrRPYIP~~t-~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 291 HVWDVRRPYIPYAT-FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred EEEeecccccccee-eeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 99998865444433 267899999999955 45678899999999988887765
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8.6e-23 Score=193.58 Aligned_cols=251 Identities=19% Similarity=0.237 Sum_probs=199.9
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCcE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV 308 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~I 308 (755)
...|.+-+..+.+.-.|+.|||++.|++|||+..+.... .+...+|.||.++|+.++|.. -|.+||+++.||.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 345677777788888999999999999999999876553 234567999999999999965 79999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.||.-..++- ...+....|.
T Consensus 83 IiWke~~g~w------------------------------------------------------------~k~~e~~~h~ 102 (299)
T KOG1332|consen 83 IIWKEENGRW------------------------------------------------------------TKAYEHAAHS 102 (299)
T ss_pred EEEecCCCch------------------------------------------------------------hhhhhhhhhc
Confidence 9999766632 1134567899
Q ss_pred CCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCC--eEEEE--EecCCcEEEEEEeeCC--C-----------CEEEEEe
Q 004410 389 SEVLDLSWSKNG---FLLSSSADKTVRLWQVGID--RCLRV--FSHNNYVTSVAFNPVD--D-----------NYFISGS 448 (755)
Q Consensus 389 ~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~--~~~~~--~~h~~~V~~i~fsp~d--~-----------~~l~sgs 448 (755)
..|++++|.|.+ .|++++.||.|.|.+.+.. -.... +.|.-.|+++.|.|.. + ..|++|+
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 999999999977 8899999999999988754 22222 2499999999999831 2 5699999
Q ss_pred CCCcEEEEEcCCCeEE---EeccCCcceEEEEEccCC----CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCC
Q 004410 449 IDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDG----KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~~---~~~~~~~~V~~v~~spdg----~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~ 521 (755)
.|..|+||+....+-+ .+.+|.+.|..++|.|.- .+||+++.||+|.||-.+......+.. +. .....
T Consensus 183 cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~t--ll---~~f~~ 257 (299)
T KOG1332|consen 183 CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKT--LL---EEFPD 257 (299)
T ss_pred CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccc--cc---ccCCc
Confidence 9999999999986433 478999999999999953 579999999999999877322211111 11 11345
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 522 RITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
.+..+.|++ .++.|++++.|+.|.+|.-.
T Consensus 258 ~~w~vSWS~-sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 258 VVWRVSWSL-SGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ceEEEEEec-cccEEEEecCCcEEEEEEeC
Confidence 789999999 89999999999999999743
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=8e-22 Score=200.60 Aligned_cols=237 Identities=18% Similarity=0.264 Sum_probs=200.1
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
..|.++...|....++||+.|..+.++|...++.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~---------------------------------------------- 253 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI---------------------------------------------- 253 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhh----------------------------------------------
Confidence 4578888888778899999999999999766542
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCC
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~ 442 (755)
+..+.||...|+.+.++++. .+++++.|..|+||.+....+.... .|..+|+.+..+| .+.
T Consensus 254 ----------------l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tge 316 (506)
T KOG0289|consen 254 ----------------LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGE 316 (506)
T ss_pred ----------------hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCc
Confidence 55678999999999999999 8999999999999998766655444 5999999999999 999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEeccC---CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC
Q 004410 443 YFISGSIDGKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP 519 (755)
Q Consensus 443 ~l~sgs~Dg~V~iwdl~~~~~~~~~~~---~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~ 519 (755)
||++++.|++..+.|++++..+....+ .-.+++++|+|||..|.+|+.||.|+|||+..+.... +...|
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a--------~Fpgh 388 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA--------KFPGH 388 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc--------cCCCC
Confidence 999999999999999999988754433 2458999999999999999999999999999887543 24558
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 520 GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 520 ~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.++|..++|+- +|.+|++++.|+.|++||++......... ......+.+++|.+.|.||+.++.|=.|++++-
T Consensus 389 t~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~-l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 389 TGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQ-LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKK 461 (506)
T ss_pred CCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceee-ccccccceeEEEcCCCCeEEeecceeEEEEEec
Confidence 89999999999 99999999999999999999865333322 333347999999999999999988766666653
No 114
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.2e-21 Score=181.48 Aligned_cols=248 Identities=21% Similarity=0.368 Sum_probs=199.0
Q ss_pred eeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC----CCEEEEEcC-CC
Q 004410 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----GQYLASGGE-DG 306 (755)
Q Consensus 232 ~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd----g~~LaSgs~-Dg 306 (755)
+.|+..+.|.+|+|+|.++|+|+.|.+|++...+........ ..-++.-|.+.|..|+|-.+ |.+|++++. |.
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g--~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATG--HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccC--cceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 445677889999999999999999999999887654433322 22357789999999999653 567888764 55
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|.+=|...| .+++.+.|
T Consensus 164 ~iy~tdc~~g--------------------------------------------------------------~~~~a~sg 181 (350)
T KOG0641|consen 164 KIYITDCGRG--------------------------------------------------------------QGFHALSG 181 (350)
T ss_pred eEEEeecCCC--------------------------------------------------------------CcceeecC
Confidence 5666565444 34667789
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
|++.|.++- +=++ .+++|+.|++|++||++-..++.++. ....|.++++.| .+++|++|-.|....+||
T Consensus 182 htghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 182 HTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLYD 259 (350)
T ss_pred CcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCceEEEE
Confidence 999999874 3345 99999999999999999999998884 346799999999 999999999999999999
Q ss_pred cCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 458 VRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 458 l~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
++.++.+ .+..|...|.++.|+|...++++++.|..|++-|+... +..+..+... ..|...+..+.|+| ..--+
T Consensus 260 irg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv---~ehkdk~i~~rwh~-~d~sf 334 (350)
T KOG0641|consen 260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVV---AEHKDKAIQCRWHP-QDFSF 334 (350)
T ss_pred eeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEE---EeccCceEEEEecC-cccee
Confidence 9999988 57788999999999999999999999999999999753 2222222222 23556788899999 56678
Q ss_pred EEEECCCcEEEEEC
Q 004410 537 IVTSADSLVRVLCG 550 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~ 550 (755)
++.+.|.++.+|-+
T Consensus 335 isssadkt~tlwa~ 348 (350)
T KOG0641|consen 335 ISSSADKTATLWAL 348 (350)
T ss_pred eeccCcceEEEecc
Confidence 88899999999965
No 115
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=8.9e-23 Score=216.76 Aligned_cols=248 Identities=21% Similarity=0.357 Sum_probs=206.7
Q ss_pred ccccEE---EEEEe-cCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 283 HEGSIL---TMKFS-LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 283 H~~~V~---~l~fs-pdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
|...|. .+..+ |.++||+|||.||.|++|++.......
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~-------------------------------------- 61 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP-------------------------------------- 61 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc--------------------------------------
Confidence 444444 44444 367889999999999999985432100
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--eEEEEEe-cCCcEEEE
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTSV 434 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~--~~~~~~~-h~~~V~~i 434 (755)
....+..+..|...|.++....++ .|+++|.|-+|++|+...+ -|+.+++ |.++|.|+
T Consensus 62 ------------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl 123 (735)
T KOG0308|consen 62 ------------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL 123 (735)
T ss_pred ------------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheee
Confidence 001145677899999999999888 9999999999999999877 5677774 99999999
Q ss_pred EE-eeCCCCEEEEEeCCCcEEEEEcCCCeE--E---------Eec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC
Q 004410 435 AF-NPVDDNYFISGSIDGKVRIWEVRRCQV--V---------DYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 435 ~f-sp~d~~~l~sgs~Dg~V~iwdl~~~~~--~---------~~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~ 501 (755)
++ .+ +..++++|+.|+.|.+||+.++.. + .+. ++...|.+++.++.|..|+.|+..+.+++||.++
T Consensus 124 a~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 124 AYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred eeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc
Confidence 99 55 889999999999999999997621 1 122 6778899999999999999999999999999999
Q ss_pred CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEE
Q 004410 502 NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
++.+.. ...|...|..+..++ |+..+++++.||+|++||+....+.... ..|...|+++..+|+-.+++
T Consensus 203 ~~kimk--------LrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~--~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 203 CKKIMK--------LRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATY--IVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred ccceee--------eeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeE--EeccCceEEEeeCCCcceEE
Confidence 887643 235778899999999 9999999999999999999887777665 67888899999999999999
Q ss_pred EEeCCCcEEEEEcCCCC
Q 004410 582 SPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~ 598 (755)
+|+.||.|+.=|+.+..
T Consensus 272 sG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPA 288 (735)
T ss_pred ecCCCCcEEecccCCch
Confidence 99999999999999865
No 116
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.5e-22 Score=203.98 Aligned_cols=290 Identities=14% Similarity=0.210 Sum_probs=224.1
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCC-EEEEEcCCCcEEEEEcc
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVI 314 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~-~LaSgs~Dg~I~vWdv~ 314 (755)
..++++.|+|.-.+|++++.|++++||.+...... ..|.+.--..+|.+..|.|+|. .+++++....++.||+.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh-----hheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 45778999999999999999999999998765432 2344555567999999999998 99999999999999998
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC-CCEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLD 393 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~ 393 (755)
+.+... +..+.++. ..+..
T Consensus 289 ~ak~~k------------------------------------------------------------~~~~~g~e~~~~e~ 308 (514)
T KOG2055|consen 289 TAKVTK------------------------------------------------------------LKPPYGVEEKSMER 308 (514)
T ss_pred cccccc------------------------------------------------------------ccCCCCcccchhhe
Confidence 775321 11222332 23556
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcc
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI 472 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~ 472 (755)
...++++ +|+..+..|.|.|....+++.+..+...+.|..++|+. ++..|++.+.+|.|.+||++...++......+.
T Consensus 309 FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~ 387 (514)
T KOG2055|consen 309 FEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS 387 (514)
T ss_pred eEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCc
Confidence 7778888 99999999999999999999999999999999999998 899999999999999999999988854433443
Q ss_pred --eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC--CCcEEEE
Q 004410 473 --VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA--DSLVRVL 548 (755)
Q Consensus 473 --V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~--Dg~I~iw 548 (755)
-+++|.+++|.+||+|+..|.|.|||..+...-...+ ++.. ...-...|+.++|+| +..+|+.++. +..+++.
T Consensus 388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk-Pik~-~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrLV 464 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK-PIKT-VDNLTTAITSLQFNH-DAQILAIASRVKKNALRLV 464 (514)
T ss_pred cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC-chhh-hhhhheeeeeeeeCc-chhhhhhhhhccccceEEE
Confidence 4678888999999999999999999976532211000 0000 111235799999999 8898888775 6778887
Q ss_pred ECCcce--eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 549 CGENVV--GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 549 d~~~~~--~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.+.... ..+... ...-+.|++++|||.|.||+.|.++|.|.+|.+.
T Consensus 465 HvPS~TVFsNfP~~-n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 465 HVPSCTVFSNFPTS-NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eccceeeeccCCCC-CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 755421 111111 2344679999999999999999999999999874
No 117
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=8.6e-22 Score=219.49 Aligned_cols=236 Identities=19% Similarity=0.346 Sum_probs=202.9
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
|...|.+..|. +.++++++.|.+|++|+..++..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i------------------------------------------- 241 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI------------------------------------------- 241 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEE-------------------------------------------
Confidence 67788999998 568999999999999998777532
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCC
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVD 440 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d 440 (755)
...+.||.+.|.++++..-+ .|++|+.|+++++||+.+++|..++. |...|.++...+
T Consensus 242 ------------------~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~-- 301 (537)
T KOG0274|consen 242 ------------------LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP-- 301 (537)
T ss_pred ------------------EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--
Confidence 23378999999999998744 99999999999999999999999996 999999999754
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEecc-CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC
Q 004410 441 DNYFISGSIDGKVRIWEVRRCQVVDYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP 519 (755)
Q Consensus 441 ~~~l~sgs~Dg~V~iwdl~~~~~~~~~~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~ 519 (755)
.++++|+.|.+|++|++.++..+.... |..+|.++.++ +.++++|+.||+|++||+.+++++.. ...|
T Consensus 302 -~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s--------l~gH 370 (537)
T KOG0274|consen 302 -FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS--------LSGH 370 (537)
T ss_pred -ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee--------ecCC
Confidence 788999999999999999999997666 99999999996 88999999999999999998888764 3347
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc-eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 520 GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV-VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 520 ~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..+|+++.+.+ . ..+++|+.|+.|++||+.+. .+.... .+|...+..+. ..+++|++++.|+.|++||..+++
T Consensus 371 ~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl--~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 371 TGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTL--QGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred cceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhh--cCCcccccccc--cccceeEeccccccEEEeecccCc
Confidence 89999998865 3 89999999999999999987 444444 66777775555 467899999999999999999988
Q ss_pred cc
Q 004410 599 KS 600 (755)
Q Consensus 599 ~~ 600 (755)
..
T Consensus 445 ~~ 446 (537)
T KOG0274|consen 445 CL 446 (537)
T ss_pred ee
Confidence 43
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=7.9e-22 Score=193.51 Aligned_cols=247 Identities=21% Similarity=0.318 Sum_probs=199.4
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCC--EEEEE
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASG 302 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~--~LaSg 302 (755)
++++-.+..|...++++|+ ++.++|+|+.|.+|+|||..+..+ ...+..|.+.|+++.|.++-. .|++|
T Consensus 33 l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-------lg~ll~HagsitaL~F~~~~S~shLlS~ 103 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-------LGILLSHAGSITALKFYPPLSKSHLLSG 103 (362)
T ss_pred eeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-------hcceeccccceEEEEecCCcchhheeee
Confidence 4555566777777877775 589999999999999999876543 245778999999999999765 89999
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
+.||.|.+|++..... +.
T Consensus 104 sdDG~i~iw~~~~W~~--------------------------------------------------------------~~ 121 (362)
T KOG0294|consen 104 SDDGHIIIWRVGSWEL--------------------------------------------------------------LK 121 (362)
T ss_pred cCCCcEEEEEcCCeEE--------------------------------------------------------------ee
Confidence 9999999999865543 45
Q ss_pred EecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
.+.+|.+.|++++.+|.+ .-++.+.|+.+++||+-.|+.-........-+.+.|+| .|.+|+.+.. ..|-||.+.+.
T Consensus 122 slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~-~~i~i~q~d~A 199 (362)
T KOG0294|consen 122 SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGR-NKIDIYQLDNA 199 (362)
T ss_pred eecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEec-cEEEEEecccH
Confidence 678899999999999999 77789999999999999998877777666666799999 8888887765 56899999987
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE-cCCCCCEEEEEE
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF-SPSDPSKVIVTS 540 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f-sp~d~~~l~s~s 540 (755)
.+.........+.++.|. ++..|++|..++.|.+||..+...... ...|..+|-++.+ ...++.+|++++
T Consensus 200 ~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~--------~~AH~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 200 SVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTE--------FLAHENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred hHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCcccee--------eecchhheeeeEEEecCCceEEEEec
Confidence 776544445566676664 567899999999999999998554432 4457889999884 322678999999
Q ss_pred CCCcEEEEECCcc
Q 004410 541 ADSLVRVLCGENV 553 (755)
Q Consensus 541 ~Dg~I~iwd~~~~ 553 (755)
.||.|+|||+...
T Consensus 271 SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 271 SDGFIKVWDIDME 283 (362)
T ss_pred cCceEEEEEcccc
Confidence 9999999998753
No 119
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.3e-22 Score=194.51 Aligned_cols=215 Identities=22% Similarity=0.295 Sum_probs=161.8
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-----eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~-----~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
+..+.+|...|++++|+.|| +|++++.|++|+||+++.. ++++.--.-+..+.+.|.|+...++++.-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45678999999999999999 9999999999999998753 22322223346789999994445556666667899
Q ss_pred EEEcCCCe-------EEEe------ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCC
Q 004410 455 IWEVRRCQ-------VVDY------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 455 iwdl~~~~-------~~~~------~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~ 521 (755)
+|-+...+ .+.+ ..|.-.+..+-...++++|++++.|..|.+|+++ |+++.. ......
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~--------idtnq~ 229 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS--------IDTNQS 229 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee--------eccccc
Confidence 99876432 1111 2344456667777789999999999999999999 555543 222344
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEECC--------cceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 522 RITGFQFSPSDPSKVIVTSADSLVRVLCGE--------NVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~--------~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
.-+..+.+| ++++|++++..-.|+||..- .....+ .+.+|...|+.++|+++...+++.+.||+++|||
T Consensus 230 ~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf--~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 230 SNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF--SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred cccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhh--eeccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 567789999 99999999999999999832 122233 3478999999999999999999999999999999
Q ss_pred cCCCCcccCCCccc
Q 004410 594 YSNQDKSSSRSKSI 607 (755)
Q Consensus 594 ~~~~~~~~~~~~~~ 607 (755)
++-.....+.++.+
T Consensus 307 tdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 307 TDVRYEAGQDPKIL 320 (420)
T ss_pred ccceEecCCCchHh
Confidence 97655444444433
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.2e-21 Score=213.81 Aligned_cols=254 Identities=19% Similarity=0.300 Sum_probs=207.6
Q ss_pred ecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.+|+..-+.|+|.|+|.+|++++.||.|++|+......
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------------------------------ 47 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------------------------------ 47 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------------------------------
Confidence 46899999999999999999999999999998754410
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeC
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV 439 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~ 439 (755)
.| ..+.-|...|.+++...+ +|++++.+++|.+|...+++.-..+ ...-++++++|+.
T Consensus 48 ------------------~P-~ti~~~g~~v~~ia~~s~-~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g- 106 (933)
T KOG1274|consen 48 ------------------EP-ETIDISGELVSSIACYSN-HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG- 106 (933)
T ss_pred ------------------CC-chhhccCceeEEEeeccc-ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-
Confidence 00 011115566766664433 8999999999999999888776555 4677899999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeE-EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~-~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
+|++++.|+.|-.|++.++.+... ..+.+|..+|.++.|+|++++||+.+.||.|+|||+.++.+..............
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 999999999999999999987654 4789999999999999999999999999999999999887765433221111112
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
....++.++|+| ++..+++...|+.|.+|+.......+......+...+..+.|+|+|+|||+++.||.|.|||+++.+
T Consensus 187 ~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 187 LSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred ccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 245678899999 7788888899999999999998888877656666679999999999999999999999999999754
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.9e-22 Score=204.37 Aligned_cols=228 Identities=22% Similarity=0.308 Sum_probs=191.6
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
...+.+++-+|.|.+|+.|+..|.+++|.+.++. +...+.+|-..|+|+.|+-||.+|+|||.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecccc-------HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 3557889999999999999999999999977654 233468899999999999999999999999999999874
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
+--. ... +...+|++.+..|.-.|+++
T Consensus 154 ~lv~-----------------------------------------a~~------------~~~~~p~~~f~~HtlsITDl 180 (476)
T KOG0646|consen 154 DLVS-----------------------------------------ADN------------DHSVKPLHIFSDHTLSITDL 180 (476)
T ss_pred eecc-----------------------------------------ccc------------CCCccceeeeccCcceeEEE
Confidence 3210 000 00246789999999999999
Q ss_pred EEcCCC---eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe---------
Q 004410 395 SWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--------- 462 (755)
Q Consensus 395 ~~s~~~---~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~--------- 462 (755)
...+.+ +|++++.|.++++||+..+..+..+.....+++++.+| .++.++.|+.+|.|.+.++.+..
T Consensus 181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k 259 (476)
T KOG0646|consen 181 QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK 259 (476)
T ss_pred EecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCccccccccc
Confidence 998765 99999999999999999999999999999999999999 89999999999999998875321
Q ss_pred --------EEEeccCCc--ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 463 --------VVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 463 --------~~~~~~~~~--~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
...+.+|.. .|+|++++-||..|++|+.||.++|||+.+.+++..... ..++|+.+++.|-
T Consensus 260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~--------~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 260 GRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT--------SKGPVTNLQINPL 330 (476)
T ss_pred ccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh--------hccccceeEeecc
Confidence 223567777 899999999999999999999999999999887764321 3468899999773
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=3.8e-21 Score=186.71 Aligned_cols=294 Identities=16% Similarity=0.182 Sum_probs=211.7
Q ss_pred eeeeccCcceeecCC-CCeeEEeeCCCeEEEEECCCCccccccccc--------ceeeecccccEEEEEEec-CCCEEEE
Q 004410 232 ARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYT--------GQEFLAHEGSILTMKFSL-DGQYLAS 301 (755)
Q Consensus 232 ~~~~~~~~~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~--------~~~l~~H~~~V~~l~fsp-dg~~LaS 301 (755)
..|...|+++.+.+. |+++++|+.||.|.|||++........... .+.-.+|+-.|..+.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 345577888888775 779999999999999998754421111111 122347889999999999 6678899
Q ss_pred EcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccc
Q 004410 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (755)
Q Consensus 302 gs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (755)
++-|.+++|||..+-+....|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~---------------------------------------------------------- 141 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK---------------------------------------------------------- 141 (397)
T ss_pred ccccceEEEeecccceeeEEee----------------------------------------------------------
Confidence 9999999999998876443332
Q ss_pred eEecCCCCCEEEEEEcCCC----eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 382 HEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 382 ~~~~gh~~~V~~l~~s~~~----~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
-.+.|..-+|+|-. ++++|..|-.|++.|+.+|.+..++ +|.+.|.++.|+|...-.|++|+.||.|++|
T Consensus 142 -----me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlW 216 (397)
T KOG4283|consen 142 -----MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLW 216 (397)
T ss_pred -----cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEE
Confidence 22345555666632 6788889999999999999999999 4999999999999666678999999999999
Q ss_pred EcCCC--eEE--------------EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 457 EVRRC--QVV--------------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 457 dl~~~--~~~--------------~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
|++.. ... .-..|.+.|..++|+.+|.++++++.|..+++|+...|................ .
T Consensus 217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~ 295 (397)
T KOG4283|consen 217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-S 295 (397)
T ss_pred EeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc-c
Confidence 99853 111 133466789999999999999999999999999999876543211111000000 0
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
-.+. ++ +- +...++.--.++.+.++.+-........ ..|-..|.+.++.|+=+...+|..|+.|+.|-.
T Consensus 296 ~~~~-~~-~~-~s~vfv~~p~~~~lall~~~sgs~ir~l--~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 296 FAVH-IQ-SM-DSDVFVLFPNDGSLALLNLLEGSFVRRL--STHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceEE-Ee-ec-ccceEEEEecCCeEEEEEccCceEEEee--ecccceeeEEeecCchhhhhccccCCccccccc
Confidence 1111 12 11 3333444444566777766554433333 556778999999999999999999999999986
No 123
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.8e-21 Score=190.27 Aligned_cols=248 Identities=17% Similarity=0.305 Sum_probs=210.2
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.++|.||++.||.++-......+.+++.|.+.+||.++++.+
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-------------------------------------- 182 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-------------------------------------- 182 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc--------------------------------------
Confidence 356889999999999987778999999999999999998875
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeC------CC-----------
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV------GI----------- 418 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl------~s----------- 418 (755)
+.++.||.+.|++++|++.+ ++++++.|++..||.. .+
T Consensus 183 ------------------------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 183 ------------------------LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred ------------------------eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 34567999999999999999 8999999999999962 11
Q ss_pred -------------------C----eEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcce
Q 004410 419 -------------------D----RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIV 473 (755)
Q Consensus 419 -------------------~----~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V 473 (755)
+ .++..+ +|...|.+..|.. .++.+++++.|.+..+||++++.++ .+.+|....
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL 317 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL 317 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhc
Confidence 0 111222 3888999999998 9999999999999999999999998 578899999
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 474 SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
+.++-+|..+++++.+.|-+.++||++.. ++.. .....|...|+++.|.. +..+++|+.|.+|+|||+.+.
T Consensus 318 tHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV-----~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 318 THCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSV-----AVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred cccccCCcceEEEEeccCceeEeccchhh--ccee-----eeecccccceeEEEEec--CCceeecCCCceEEEeeeccc
Confidence 99999999999999999999999999832 2211 12445778999999986 467999999999999999987
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...+.. .....+++.++.+..+..|+.--.+..|++||++..+
T Consensus 389 RsplAT--IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 389 RSPLAT--IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred cCccee--eecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 766655 6677889999999888899999888999999998765
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=3.6e-22 Score=198.97 Aligned_cols=242 Identities=17% Similarity=0.272 Sum_probs=203.4
Q ss_pred eeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 279 EFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
.|.||.+.|.|++=+|.. ..+|||+.||.|+|||+.+..+
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--------------------------------------- 101 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--------------------------------------- 101 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh---------------------------------------
Confidence 358899999999999976 7899999999999999976543
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEe
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fs 437 (755)
+.++..|.+.|..|++.. +.+++++.|++|+.|-+.. ..++++.....+..|.-+
T Consensus 102 -----------------------~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~ 156 (433)
T KOG0268|consen 102 -----------------------IRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHH 156 (433)
T ss_pred -----------------------hheeecccCceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeeccccccccccc
Confidence 455678999999999987 6789999999999998865 477777777888888887
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc
Q 004410 438 PVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 438 p~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
. .++.|++++. .|-|||......+ .+.-....|.++.|+|.. ..|+++..|+.|.+||++.+..+....+.
T Consensus 157 ~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---- 229 (433)
T KOG0268|consen 157 R-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT---- 229 (433)
T ss_pred c-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----
Confidence 7 7888999874 5999999766555 455566789999999965 45666779999999999999887654432
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.+-+.++|+| ..-.++++..|..++.+|+..+....... .+|...|+++.|+|.|+-+++||.|.+|+||.++
T Consensus 230 -----mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~-~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 230 -----MRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVH-KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred -----ccccceecCc-cccceeeccccccceehhhhhhcccchhh-cccceeEEEeccCCCcchhccccccceEEEeecC
Confidence 3457899999 88899999999999999998876555442 6788999999999999999999999999999998
Q ss_pred CCC
Q 004410 596 NQD 598 (755)
Q Consensus 596 ~~~ 598 (755)
.+.
T Consensus 303 ~~~ 305 (433)
T KOG0268|consen 303 HGH 305 (433)
T ss_pred CCc
Confidence 876
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.5e-21 Score=186.49 Aligned_cols=262 Identities=17% Similarity=0.212 Sum_probs=197.5
Q ss_pred eeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCcEE
Q 004410 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVR 309 (755)
Q Consensus 232 ~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~I~ 309 (755)
.+|.|-+.++.|.+.|+.+|+++.|++|+|||..+.. .+..+....++|.+.|+.+.|.+ -|+.+|+++.|+++.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s---~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS---GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC---CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 4567888899999999999999999999999975433 34445567899999999999965 589999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
||.=.... +..+.. .-....++....+
T Consensus 87 iWEE~~~~----~~~~~~-------------------------------------------------~Wv~~ttl~Dsrs 113 (361)
T KOG2445|consen 87 IWEEQEKS----EEAHGR-------------------------------------------------RWVRRTTLVDSRS 113 (361)
T ss_pred eeeecccc----cccccc-------------------------------------------------eeEEEEEeecCCc
Confidence 99743111 000000 0012345666788
Q ss_pred CEEEEEEcCCC---eEEEEeCCCcEEEEeCCCC------eEEEEEe--------cCCcEEEEEEeeC--CCCEEEEEeCC
Q 004410 390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGID------RCLRVFS--------HNNYVTSVAFNPV--DDNYFISGSID 450 (755)
Q Consensus 390 ~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~------~~~~~~~--------h~~~V~~i~fsp~--d~~~l~sgs~D 450 (755)
.|++++|.|.. .|++++.||+||||++-.- .+...++ +.....|+.|+|. ...+|+.|+.+
T Consensus 114 sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e 193 (361)
T KOG2445|consen 114 SVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDE 193 (361)
T ss_pred ceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEccc
Confidence 99999999964 8999999999999986432 2222222 6667889999982 34578888766
Q ss_pred -----CcEEEEEcCCCe--EE---EeccCCcceEEEEEccC----CCeEEEEeCCCcEEEEECCCC------------eE
Q 004410 451 -----GKVRIWEVRRCQ--VV---DYTDIREIVSAVCYCPD----GKGGIVGTMTGNCRFYDIKDN------------QL 504 (755)
Q Consensus 451 -----g~V~iwdl~~~~--~~---~~~~~~~~V~~v~~spd----g~~la~gs~dg~I~iwD~~~~------------~~ 504 (755)
+.+.||...... .. .+.++..+|+.|+|.|+ -..||+++.|| |+||.+... ..
T Consensus 194 ~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~ 272 (361)
T KOG2445|consen 194 DAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDL 272 (361)
T ss_pred CCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCC
Confidence 589999876432 22 57789999999999995 35789999999 999998742 12
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
...+++........|...|..+.|+- .+..|.+++.||.||+|...
T Consensus 273 ~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 273 MTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhh
Confidence 22334444445667889999999998 88999999999999999854
No 126
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=6.2e-21 Score=202.51 Aligned_cols=283 Identities=17% Similarity=0.250 Sum_probs=207.3
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCC
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD 326 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~ 326 (755)
.++||.+.++|.|.+++.....-.+.. .......+|.++|..++|-|....|++++.|.++++||+.+.+...
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G------ 136 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG------ 136 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhh-hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec------
Confidence 458999999999999998754433211 1124567899999999999966789999999999999998876431
Q ss_pred CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEE
Q 004410 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS 404 (755)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s 404 (755)
...+.||.+.|.+++|.+.+ .|++
T Consensus 137 ------------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 137 ------------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCT 162 (720)
T ss_pred ------------------------------------------------------ceeecccccccchhhhccCCCcceee
Confidence 12357899999999999988 8999
Q ss_pred EeCCCcEEEEeCCCCe--------------------EEEEE--------ecCCcEEE---EEEeeCCCCEEEEEeC-CCc
Q 004410 405 SSADKTVRLWQVGIDR--------------------CLRVF--------SHNNYVTS---VAFNPVDDNYFISGSI-DGK 452 (755)
Q Consensus 405 ~s~Dg~V~iWdl~s~~--------------------~~~~~--------~h~~~V~~---i~fsp~d~~~l~sgs~-Dg~ 452 (755)
|+.||.|.|||++... ..+.. .+...|.+ +.+.. |...||+++. |+.
T Consensus 163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~ 241 (720)
T KOG0321|consen 163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADST 241 (720)
T ss_pred ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcc
Confidence 9999999999986432 00000 13333443 33444 8889999887 999
Q ss_pred EEEEEcCCCeEEE---------eccC---CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 453 VRIWEVRRCQVVD---------YTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 453 V~iwdl~~~~~~~---------~~~~---~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
|+|||+++..... +..+ .-.+++++....|.+|++.+.|+.|++|++.+...-.... +.++ ..
T Consensus 242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~--~sg~---~~ 316 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE--FSGK---LN 316 (720)
T ss_pred eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh--ccCc---cc
Confidence 9999999754331 1222 2357888888889999999999999999998654321111 1110 01
Q ss_pred CCe-EEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCC
Q 004410 521 KRI-TGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG-KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 521 ~~I-~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..+ ..-..+| ++.++++|+.|....+|.+.+....... +.+|.-.|++++|.|.. .-++++++|..++||++.++-
T Consensus 317 ~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~-l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 317 SSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPAL-LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhh-hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 111 2234577 8999999999999999998876554433 26799999999997743 347777999999999997765
No 127
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=7.4e-21 Score=194.58 Aligned_cols=306 Identities=22% Similarity=0.330 Sum_probs=212.6
Q ss_pred ceeecCCCCeeEEeeCC---CeEEEEECCCCcccccccccceeeecccccEEEEEEec-------CCCEEEEEcCCCcEE
Q 004410 240 SATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-------DGQYLASGGEDGTVR 309 (755)
Q Consensus 240 ~~~~spdg~~lasgs~d---g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-------dg~~LaSgs~Dg~I~ 309 (755)
...+-|+.++++++-.. ..+-||-++... ..+|..+.+.- ...-.|++|.. -|+|+|.|+.|-.|.
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e---~nlYvHHD~il-pafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEE---ENLYVHHDFIL-PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCC---cceeEecceec-cCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 36677888877776442 334444443222 23332221111 12235677743 268999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
|||+.-...+.. ++. +.....+. .....+.-..-.+|+.
T Consensus 206 IWDLDI~d~v~P---------~~~-----------LGs~~sk~---------------------~~k~~k~~~~~~gHTd 244 (463)
T KOG0270|consen 206 IWDLDIVDAVLP---------CVT-----------LGSKASKK---------------------KKKKGKRSNSASGHTD 244 (463)
T ss_pred Eecccccccccc---------cee-----------echhhhhh---------------------hhhhcccccccccchH
Confidence 999853321100 000 00000000 0000111223458999
Q ss_pred CEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-E
Q 004410 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D 465 (755)
Q Consensus 390 ~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~ 465 (755)
.|.+|+|+..- .|++|+.|.+|++||+.++++..++. |.+.|.+++|+|....+|++|+.|++|.+.|.+..... .
T Consensus 245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc
Confidence 99999999866 89999999999999999999999997 89999999999999999999999999999999953222 2
Q ss_pred eccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCC-eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 466 YTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.....+.|-.++|.|.. ..+++++.||+|+-+|++.. +.+.+ .+.|...|.++++++..+.++++++.|+
T Consensus 325 ~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt--------~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 325 EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT--------LKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE--------EEeccCCcceEEecCCCCcceeeccccc
Confidence 33355778999999954 56788899999999999976 44433 3457889999999999999999999999
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCC
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.|++|+.............-.-+...+.++.|+-. +++.|+..+.++|||+.+..
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 99999977644433221111223456667777654 46778888889999998876
No 128
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2e-19 Score=177.59 Aligned_cols=215 Identities=25% Similarity=0.400 Sum_probs=171.1
Q ss_pred CccceEecCCCCCEEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 004410 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA--DKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKV 453 (755)
Q Consensus 378 ~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~--Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V 453 (755)
++.+.++..+...|..++|.... .++.++. |.+||..++.+.+.++.| +|...|+.|..+| -++.|++++.|++|
T Consensus 46 g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tv 124 (311)
T KOG1446|consen 46 GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTV 124 (311)
T ss_pred CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeE
Confidence 45567777777788888887655 6666665 899999999999999999 5999999999999 67999999999999
Q ss_pred EEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE--eeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 454 RIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL--YQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~--~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
++||++..++........ -..++|.|.|-.+|++...+.|++||++.-.. ...+.+ ........+.+.|+|
T Consensus 125 rLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i-----~~~~~~ew~~l~FS~- 197 (311)
T KOG1446|consen 125 RLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSI-----TDNDEAEWTDLEFSP- 197 (311)
T ss_pred EeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEcc-----CCCCccceeeeEEcC-
Confidence 999999777664443332 24579999999999999888999999996432 222221 113457899999999
Q ss_pred CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCC-ceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 532 DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAG-SQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
+|+.|+.+...+.+++.|.-++..+.......... --..++|+||+++|++|+.||+|.+|+++++.+.
T Consensus 198 dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 198 DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 99999999999999999988765444443233333 2267899999999999999999999999998743
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.1e-22 Score=214.90 Aligned_cols=256 Identities=25% Similarity=0.432 Sum_probs=215.1
Q ss_pred CCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 245 pdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
|...+++.+-..-.++||+.+ ++.+|...|.++..-..++.+++|+.|..+-+|.+....
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~-------------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~------- 61 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTR-------------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN------- 61 (825)
T ss_pred Ccccccceeeeeeccccccch-------------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-------
Confidence 334455555566667788753 356799999999987788999999999999999874332
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~ 403 (755)
++..+.+|..+|.++.|+... .|+
T Consensus 62 -------------------------------------------------------~i~S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 62 -------------------------------------------------------AITSLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred -------------------------------------------------------hhheeeccCCcceeeecCcchhhhc
Confidence 133478999999999999988 899
Q ss_pred EEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccC
Q 004410 404 SSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPD 481 (755)
Q Consensus 404 s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spd 481 (755)
+|+.+|+|++||+...+.++++ .|...+..++|+| -+.++++|+.|+.+++||++..-+. .+..|...+..+.|+|+
T Consensus 87 agsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~ 165 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD 165 (825)
T ss_pred ccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCC
Confidence 9999999999999999988887 5999999999999 8999999999999999999955555 56678888999999999
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee
Q 004410 482 GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA 561 (755)
Q Consensus 482 g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 561 (755)
|++++.|+.|..++|||+..+++..+ .+.|...+..+.|+| ..-+++.|+.|.+|++||+.+....-..
T Consensus 166 Gr~v~~g~ed~tvki~d~~agk~~~e--------f~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~-- 234 (825)
T KOG0267|consen 166 GRWVASGGEDNTVKIWDLTAGKLSKE--------FKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSG-- 234 (825)
T ss_pred CceeeccCCcceeeeecccccccccc--------cccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeecc--
Confidence 99999999999999999999987754 345778899999999 8889999999999999999875444333
Q ss_pred eccCCceEEEEEecCCCEEEEEeCCC
Q 004410 562 FRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 562 ~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
......|.++.|.|+++.+++|..+.
T Consensus 235 ~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCccCCceeeeecCCceeeecCchhh
Confidence 44577899999999999999887653
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.3e-19 Score=177.48 Aligned_cols=252 Identities=18% Similarity=0.264 Sum_probs=186.8
Q ss_pred ecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.+|.+-|.++.|.+.|+.+|||+.|++|+|||.....-..
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W---------------------------------------- 49 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW---------------------------------------- 49 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce----------------------------------------
Confidence 4799999999999999999999999999999974432110
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCC-------Ce--EEEEE-ec
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGI-------DR--CLRVF-SH 427 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s-------~~--~~~~~-~h 427 (755)
......+.|.+.|..+.|.+-. .+++++.|++|.||.-.. .+ ...++ ..
T Consensus 50 ------------------~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds 111 (361)
T KOG2445|consen 50 ------------------SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS 111 (361)
T ss_pred ------------------EEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC
Confidence 0123457799999999997643 899999999999996421 11 12222 36
Q ss_pred CCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCCeEE-E-------------eccCCcceEEEEEcc---CCCeEEEEe
Q 004410 428 NNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-D-------------YTDIREIVSAVCYCP---DGKGGIVGT 489 (755)
Q Consensus 428 ~~~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~~~~-~-------------~~~~~~~V~~v~~sp---dg~~la~gs 489 (755)
...|+.|+|.|. -|-.|++++.||.||||+...---+ + ...+...-.|+.|+| ...+||+|+
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs 191 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS 191 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc
Confidence 788999999993 3557899999999999998653211 1 112455678899998 457889988
Q ss_pred CC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC---CEEEEEECCCcEEEEECCcc--------
Q 004410 490 MT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP---SKVIVTSADSLVRVLCGENV-------- 553 (755)
Q Consensus 490 ~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~---~~l~s~s~Dg~I~iwd~~~~-------- 553 (755)
.+ +.++||....+....... .....+..+|++++|.|.-+ .+|++++.|| |+||.+...
T Consensus 192 ~e~a~~~~~~~Iye~~e~~rKw~kv----a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee 266 (361)
T KOG2445|consen 192 DEDAPHLNKVKIYEYNENGRKWLKV----AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE 266 (361)
T ss_pred ccCCccccceEEEEecCCcceeeee----hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhc
Confidence 76 578888766544221111 11235778999999999644 4789999999 999986631
Q ss_pred ----------eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 554 ----------VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 554 ----------~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
..........|.+.|..+.|.-.|..|++.|.||.|++|..+
T Consensus 267 ~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 267 VLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 112223346789999999999999999999999999999864
No 131
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.5e-20 Score=180.89 Aligned_cols=286 Identities=15% Similarity=0.185 Sum_probs=202.3
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
-.|+.|++.|.+||.|+.||+|.|||+.+ +...+.+.+|..+|.+++||+||+.|+|++.|..|++||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 45689999999999999999999999654 44567789999999999999999999999999999999998887
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
.++.+. ..++|+.+.|+
T Consensus 99 ~l~rir---------------------------------------------------------------f~spv~~~q~h 115 (405)
T KOG1273|consen 99 PLKRIR---------------------------------------------------------------FDSPVWGAQWH 115 (405)
T ss_pred ceeEEE---------------------------------------------------------------ccCccceeeec
Confidence 554432 34567777787
Q ss_pred CCC--eEEEEeCCCcEEEEeCCCCe--EEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccC-
Q 004410 398 KNG--FLLSSSADKTVRLWQVGIDR--CLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI- 469 (755)
Q Consensus 398 ~~~--~L~s~s~Dg~V~iWdl~s~~--~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~- 469 (755)
|.. ..++.-++..-.+-++...+ ++..-. .+..-.+..|.+ .|+++++|...|.+.++|..+.+++.....
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rit 194 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRIT 194 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeec
Confidence 755 44444444444444444321 111111 112223346787 999999999999999999999998853332
Q ss_pred -CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee-eeeEEecccc--cCCCCCeEEEEEcCCCCCEEEEEE-CCCc
Q 004410 470 -REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ-QNQICLQGKK--KLPGKRITGFQFSPSDPSKVIVTS-ADSL 544 (755)
Q Consensus 470 -~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~-~~~~~~~~~~--~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~ 544 (755)
...|..+.++..|..|++-+.|..|+.|+++.-.... ........+. -.....-.+++|+. ++.+++.++ ....
T Consensus 195 s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHA 273 (405)
T ss_pred hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEecccccee
Confidence 3578999999999999999999999999987321110 0000000000 01223456788888 777777665 4567
Q ss_pred EEEEECCcceeeEEEeeeccC-CceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKASAFRVA-GSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~-~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++||....+...... .+.. .....+.|+|-...|++- ..|.|+||.....+
T Consensus 274 LYIWE~~~GsLVKIL--hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 274 LYIWEKSIGSLVKIL--HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred EEEEecCCcceeeee--cCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 999986654333222 3444 456788999998888887 77899999987655
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=3.6e-20 Score=190.06 Aligned_cols=296 Identities=17% Similarity=0.249 Sum_probs=214.8
Q ss_pred ceeeeeccCcceeecCCCC--eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCC
Q 004410 230 AMARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDG 306 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~--~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg 306 (755)
..+-+..++.+++|+|... ++|+|..-|.|-+|++....+..... -.+..|.++|.+|.|+|. ...+++.+.||
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---YLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---EEeccCCccccceEecCCChhheeeeccCc
Confidence 3445567889999999875 88999999999999997444443333 236789999999999994 56888999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+|++-|++....-. +..+..
T Consensus 258 tiR~~D~~~~i~e~------------------------------------------------------------v~s~~~ 277 (498)
T KOG4328|consen 258 TIRLQDFEGNISEE------------------------------------------------------------VLSLDT 277 (498)
T ss_pred eeeeeeecchhhHH------------------------------------------------------------HhhcCc
Confidence 99999987653110 111111
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeE-EEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC--
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-- 461 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~-~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-- 461 (755)
....+..+.|+.+. .++++..=|...+||++++.. ...+ -|...|+.|+++|....+|++++.|++++|||++.-
T Consensus 278 d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 278 DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcC
Confidence 23345667777766 777777778999999988765 2222 388899999999999999999999999999999852
Q ss_pred ---eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECC----CCeEeeeeeEEecccccCCCCC--eEEEEEcCCC
Q 004410 462 ---QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK----DNQLYQQNQICLQGKKKLPGKR--ITGFQFSPSD 532 (755)
Q Consensus 462 ---~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~----~~~~~~~~~~~~~~~~~~~~~~--I~~v~fsp~d 532 (755)
..+....|...|.++.|+|.+-.|++.+.|..|+|||.. .-....+ + .+...++.. .....|.| +
T Consensus 358 K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~--I---~Hn~~t~RwlT~fKA~W~P-~ 431 (498)
T KOG4328|consen 358 KASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT--I---PHNNRTGRWLTPFKAAWDP-D 431 (498)
T ss_pred CCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce--e---eccCcccccccchhheeCC-C
Confidence 146778899999999999988789999999999999984 1111111 1 111122233 33468999 8
Q ss_pred CCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceE-EEEEecCCCEEEEE-eCCCcEEEEEcC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQM-FATFTSDGKHVVSP-SEDSNIYIWNYS 595 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~-~l~fspdg~~L~sg-s~Dg~I~iWd~~ 595 (755)
..+|++|-.-..|-|+|........... ......|. -..|+|-+..+++| +.-|.|+||--+
T Consensus 432 ~~li~vg~~~r~IDv~~~~~~q~v~el~-~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 432 YNLIVVGRYPRPIDVFDGNGGQMVCELH-DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccEEEEeccCcceeEEcCCCCEEeeecc-CccccccccceeecccccceeccCCccceEEEEecC
Confidence 9999999999999999987655444331 11222333 35799988855554 567888888644
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=198.50 Aligned_cols=276 Identities=16% Similarity=0.235 Sum_probs=214.3
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
.|......+++.|+|.+|.+++.||.|++|+......+.. .+.-|...|.+++- ++.+|++|+.+++|.+|.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~------ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE------TIDISGELVSSIAC--YSNHFLTGSEQNTVLRYK 82 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc------hhhccCceeEEEee--cccceEEeeccceEEEee
Confidence 3455666799999999999999999999999765432221 22237778888876 456999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+.+++.-. .+...+-++.
T Consensus 83 fps~~~~~--------------------------------------------------------------iL~Rftlp~r 100 (933)
T KOG1274|consen 83 FPSGEEDT--------------------------------------------------------------ILARFTLPIR 100 (933)
T ss_pred CCCCCccc--------------------------------------------------------------eeeeeeccce
Confidence 87764210 0112345688
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-ecc-
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTD- 468 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~- 468 (755)
+++|+.+| +++.|+.|-.|++-++......+.+ +|.++|.++.|+| .+++||+.+.||+|++||+.++.+.. +.+
T Consensus 101 ~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 101 DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred EEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence 99999999 9999999999999999887777777 5999999999999 99999999999999999999887652 111
Q ss_pred -------CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 469 -------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 469 -------~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
....+..++|+|+|..+++...|+.|++|+..+......+. . +.+...+..++|+| .|.+||+++.
T Consensus 180 ~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr----~--~~~ss~~~~~~wsP-nG~YiAAs~~ 252 (933)
T KOG1274|consen 180 DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR----D--KLSSSKFSDLQWSP-NGKYIAASTL 252 (933)
T ss_pred CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec----c--cccccceEEEEEcC-CCcEEeeecc
Confidence 13457889999998889999999999999999988765432 1 22334499999999 8999999999
Q ss_pred CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 004410 542 DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
||.|.|||..+... ......|++++|.|++.-|-.-..-|...+|
T Consensus 253 ~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 253 DGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred CCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999887211 2234678999999988766544444443333
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=4.2e-20 Score=185.21 Aligned_cols=259 Identities=23% Similarity=0.303 Sum_probs=197.2
Q ss_pred eeecccccEEEEEEecCC--CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 279 EFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg--~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
...+|.+.|+.+.-++-| .+.|+-++.|.|+||++...-. .+......
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~--~l~~~~~~---------------------------- 195 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN--ALSEPGLE---------------------------- 195 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh--hhcCcccc----------------------------
Confidence 345788999998888754 5777778899999999854311 11100000
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC--CeEEEEeCCCcEEEEeCCCCeEEEE----EecCCc
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRV----FSHNNY 430 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~L~s~s~Dg~V~iWdl~s~~~~~~----~~h~~~ 430 (755)
......+|+.++.+|...=+.|+|||- |.|++|..-+.|++|...++....- ..|+..
T Consensus 196 ----------------~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~S 259 (440)
T KOG0302|consen 196 ----------------VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKS 259 (440)
T ss_pred ----------------ccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccc
Confidence 000224789999999999999999994 4899999999999999988755322 249999
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC---eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~---~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
|-.|+|+|.....|++|+-||+|+|||++.+ .++....|...|+.|.|+.+-.+||+|+.||+++|||++.-+.-+.
T Consensus 260 VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 260 VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred hhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCc
Confidence 9999999988899999999999999999987 5667788999999999999888999999999999999997554321
Q ss_pred eeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee----------e----EEEeeecc--CCceEEE
Q 004410 508 NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG----------K----FKASAFRV--AGSQMFA 571 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~----------~----~~~~~~~~--~~~v~~l 571 (755)
....+.|..+|+++.|+|.+...|++++.|.+|.|||+.-... . ....++-| ...+..+
T Consensus 340 -----VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~Kev 414 (440)
T KOG0302|consen 340 -----VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEV 414 (440)
T ss_pred -----ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhh
Confidence 1124557899999999999999999999999999999653111 0 00011223 3456778
Q ss_pred EEecCC-CEEEEEeCCCc
Q 004410 572 TFTSDG-KHVVSPSEDSN 588 (755)
Q Consensus 572 ~fspdg-~~L~sgs~Dg~ 588 (755)
.|++.- .+|++.+.||.
T Consensus 415 hWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 415 HWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred eeccCCCCeEEEecccce
Confidence 888763 47888888864
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.4e-19 Score=188.82 Aligned_cols=284 Identities=15% Similarity=0.234 Sum_probs=227.4
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecc-cccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H-~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
+......+.++|++.+.+.||.+-.+|.|.||++.... ++...+.+| ...|.+++|+ ++..|.+.+.+|.|.
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w------~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW------FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSIT 93 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCc------eeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEE
Confidence 34445678889999999999999999999999987533 334455555 4689999999 455788999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
-||+.+++.+. .+....+
T Consensus 94 EwDl~~lk~~~--------------------------------------------------------------~~d~~gg 111 (691)
T KOG2048|consen 94 EWDLHTLKQKY--------------------------------------------------------------NIDSNGG 111 (691)
T ss_pred EEecccCceeE--------------------------------------------------------------EecCCCc
Confidence 99998876533 3344567
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
.|++++.+|.+ .++.|+.||.+..++...++..... ...+.|.++.|+| ++..+++|+.||.|++||..+++.+.
T Consensus 112 ~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 112 AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEE
Confidence 89999999988 8999999998888888877765443 2678999999999 99999999999999999999887664
Q ss_pred -----eccC----CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 466 -----YTDI----REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 466 -----~~~~----~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
+... ...|.++.|-.+ ..|++|...|+|.+||...+.+++. ...|...|.+++..+ ++..+
T Consensus 191 ~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS--------~~~h~adVl~Lav~~-~~d~v 260 (691)
T KOG2048|consen 191 IITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQS--------HSCHDADVLALAVAD-NEDRV 260 (691)
T ss_pred EeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhh--------hhhhhcceeEEEEcC-CCCeE
Confidence 2222 234777877755 4789999999999999999988764 445788999999999 88999
Q ss_pred EEEECCCcEEEEECCcceeeEEE--eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 537 IVTSADSLVRVLCGENVVGKFKA--SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~~~--~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
++++.|+.|.-|........+.. ....|...+.+++..++ .|++|+.|..+.+-....
T Consensus 261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 99999999999887665442221 22457788999998876 899999999999877655
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.2e-21 Score=210.37 Aligned_cols=236 Identities=20% Similarity=0.420 Sum_probs=204.0
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
+...+|...++++..-..++.+++|+.|..+.+|.+.+..... .|.+|+.+|.++.|+++..+|++|+.+|+|
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-------S~~~hespIeSl~f~~~E~Llaagsasgti 94 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-------SLTGHESPIESLTFDTSERLLAAGSASGTI 94 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-------eeeccCCcceeeecCcchhhhcccccCCce
Confidence 3445566677777777788899999999999999977654333 378999999999999999999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
++||+++.+ .++++.||.
T Consensus 95 K~wDleeAk--------------------------------------------------------------~vrtLtgh~ 112 (825)
T KOG0267|consen 95 KVWDLEEAK--------------------------------------------------------------IVRTLTGHL 112 (825)
T ss_pred eeeehhhhh--------------------------------------------------------------hhhhhhccc
Confidence 999997654 256778999
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-E
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~ 465 (755)
..+..+.|+|-+ +.++++.|+.+++||++...|...+. |...|.++.|+| +|+++++|+.|..++|||+..+++. .
T Consensus 113 ~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 113 LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred cCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccc
Confidence 999999999999 88999999999999999999999995 999999999999 9999999999999999999999988 5
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
+..|...+.++.|+|..-+++.|+.|+++++||+++..++.. .+.....|.+..|+| ++..+++|....
T Consensus 192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s--------~~~~~~~v~~~~fn~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS--------GKPETDGVRSLAFNP-DGKIVLSGEQIS 260 (825)
T ss_pred cccccccccccccCchhhhhccCCCCceeeeeccceeEEeec--------cCCccCCceeeeecC-CceeeecCchhh
Confidence 667999999999999999999999999999999998776542 222356899999999 888777776554
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.3e-20 Score=180.39 Aligned_cols=242 Identities=21% Similarity=0.280 Sum_probs=189.0
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceE
Q 004410 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (755)
Q Consensus 287 V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 366 (755)
-.|+.|++.|.+||+|+.||.|.|||+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------------ 57 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------------ 57 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------------
Confidence 78999999999999999999999999876531
Q ss_pred EEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE
Q 004410 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~ 445 (755)
-..+.+|..+|++++|+++| .|++++.|..|.+||+..+.+++.+....+|+..+|+|.+.+.++
T Consensus 58 --------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v 123 (405)
T KOG1273|consen 58 --------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV 123 (405)
T ss_pred --------------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence 23467899999999999999 999999999999999999999999999999999999997777777
Q ss_pred EEeCCCcEEEEEcCCCeE--EEecc---CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 446 SGSIDGKVRIWEVRRCQV--VDYTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 446 sgs~Dg~V~iwdl~~~~~--~~~~~---~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
+.-.+..-.+-++..... +.... ......+..|.+.|++|++|+..|.+.+||..+.+++..+.+.. .
T Consensus 124 a~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-------~ 196 (405)
T KOG1273|consen 124 ATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-------V 196 (405)
T ss_pred EEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-------h
Confidence 766666656666554322 21111 12223445699999999999999999999999998876554421 3
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEE---------EeeeccCCceEEEEEecCCCEEEEEeCC-CcEE
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFK---------ASAFRVAGSQMFATFTSDGKHVVSPSED-SNIY 590 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~---------~~~~~~~~~v~~l~fspdg~~L~sgs~D-g~I~ 590 (755)
..|..+.++. .+..+++-+.|..||.|++.+....-+ ..-.-+...=.+++|+.+|.|++.++.- ..+|
T Consensus 197 ~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 197 QAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred eeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence 5677888888 899999999999999999875332211 0001122233578999999999888743 4599
Q ss_pred EEEcCCCC
Q 004410 591 IWNYSNQD 598 (755)
Q Consensus 591 iWd~~~~~ 598 (755)
||.-..|.
T Consensus 276 IWE~~~Gs 283 (405)
T KOG1273|consen 276 IWEKSIGS 283 (405)
T ss_pred EEecCCcc
Confidence 99988876
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=186.72 Aligned_cols=201 Identities=17% Similarity=0.268 Sum_probs=170.0
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC----
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR---- 460 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~---- 460 (755)
-.+.|.+++-+|+| +|+.|+..+.|++|.+.+|..+.++ .|-..|+|+.|+- |+.+|++|+.||.|.+|.+.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeeccc
Confidence 35779999999999 6666669999999999999999888 4999999999998 999999999999999998742
Q ss_pred ------CeEEEeccCCcceEEEEEccC--CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 461 ------CQVVDYTDIREIVSAVCYCPD--GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 461 ------~~~~~~~~~~~~V~~v~~spd--g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
.....+.+|.-.|+.+...+. ..+|++++.|.+|++||+..+.++..... ...|.+++..| .
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---------p~si~av~lDp-a 228 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF---------PSSIKAVALDP-A 228 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec---------CCcceeEEEcc-c
Confidence 123368889999999988775 46899999999999999999998865432 46899999999 8
Q ss_pred CCEEEEEECCCcEEEEECCcce--------------eeEEEeeeccCC--ceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVV--------------GKFKASAFRVAG--SQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~--------------~~~~~~~~~~~~--~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
...+++|+.+|.|.+.++.... ........+|.+ .|++++++-||..|++|+.||.|.|||+.+
T Consensus 229 e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 229 ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 8999999999999998755432 111222356766 999999999999999999999999999988
Q ss_pred CC
Q 004410 597 QD 598 (755)
Q Consensus 597 ~~ 598 (755)
.+
T Consensus 309 ~Q 310 (476)
T KOG0646|consen 309 KQ 310 (476)
T ss_pred HH
Confidence 76
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.9e-20 Score=201.42 Aligned_cols=218 Identities=19% Similarity=0.367 Sum_probs=175.0
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCC---CeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGI---DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s---~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
+.++.|+... +|++++..|.|.+||+.. .+.+..| .|...|+++.|++...++|++|+.||+|++||++...-.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 4567888533 999999999999999987 5555666 499999999999999999999999999999999987655
Q ss_pred -EeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 465 -DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 465 -~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
.+....+.|..|.|+| .+..|+++...|.+++||++...... .+...|.+.|.++.|+| +..+||+|+.|
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~-------~k~~AH~GpV~c~nwhP-nr~~lATGGRD 241 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE-------KKLTAHNGPVLCLNWHP-NREWLATGGRD 241 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH-------HHhhcccCceEEEeecC-CCceeeecCCC
Confidence 5666778899999999 67899999999999999999765432 23567899999999999 99999999999
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCE-EEEEe--CCCcEEEEEcCCCCcccCCCccccceeeeecCCeE
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKH-VVSPS--EDSNIYIWNYSNQDKSSSRSKSIWSCESFLSHNVS 619 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~-L~sgs--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~f~~~~~~ 619 (755)
++|+|||..+........ .....++..+.|-|+..+ |++++ .|-.|+|||+..+. .++..|.+|.-.
T Consensus 242 K~vkiWd~t~~~~~~~~t-InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY---------IP~~t~~eH~~~ 311 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHT-INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY---------IPYATFLEHTDS 311 (839)
T ss_pred ccEEEEeccCCCccceeE-EeecceeeeeeeccCccchhhhhhccccceEEEEeecccc---------ccceeeeccCcc
Confidence 999999988654443332 445678999999998776 55554 58889999998654 344445555444
Q ss_pred E-EEcCCC
Q 004410 620 V-AIPWVG 626 (755)
Q Consensus 620 v-a~~w~g 626 (755)
+ .+.|.+
T Consensus 312 vt~i~W~~ 319 (839)
T KOG0269|consen 312 VTGIAWDS 319 (839)
T ss_pred ccceeccC
Confidence 4 566655
No 140
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.5e-20 Score=188.88 Aligned_cols=241 Identities=18% Similarity=0.244 Sum_probs=191.0
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccc--------------eeeecccccEEEEEEecCC-CEEEEEcCCCcEEE
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--------------QEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRV 310 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~--------------~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~v 310 (755)
.|+++|.|+.+..|.|||+.-....+..+..+ ..-.+|+++|.+|.|+.+- +.||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 46799999999999999986433322222211 1134799999999998754 68999999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.++++. .++..|...
T Consensus 271 WD~~~g~p~--------------------------------------------------------------~s~~~~~k~ 288 (463)
T KOG0270|consen 271 WDVDTGKPK--------------------------------------------------------------SSITHHGKK 288 (463)
T ss_pred EEcCCCCcc--------------------------------------------------------------eehhhcCCc
Confidence 999988643 334568899
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC-eEE-E
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVV-D 465 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s-~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-~~~-~ 465 (755)
|.++.|+|.. .|++|+.|++|.+.|.+. .+.-..++..+.|-.++|+|.....|+++..||+|+-+|+|.. +++ .
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence 9999999987 999999999999999984 3444556788999999999988899999999999999999975 444 7
Q ss_pred eccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 466 YTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
...|...|.+|++++.- .++++++.++.|++|++......... .....-++..|+++.|....++++|+..+.
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~------~~~~~~~rl~c~~~~~~~a~~la~GG~k~~ 442 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK------EHSFKLGRLHCFALDPDVAFTLAFGGEKAV 442 (463)
T ss_pred EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc------cccccccceeecccCCCcceEEEecCccce
Confidence 88899999999999854 56788999999999998765432111 111223457888999978889999999999
Q ss_pred EEEEECCcce
Q 004410 545 VRVLCGENVV 554 (755)
Q Consensus 545 I~iwd~~~~~ 554 (755)
++|||..+..
T Consensus 443 ~~vwd~~~~~ 452 (463)
T KOG0270|consen 443 LRVWDIFTNS 452 (463)
T ss_pred EEEeecccCh
Confidence 9999987643
No 141
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.85 E-value=1.1e-19 Score=194.88 Aligned_cols=259 Identities=19% Similarity=0.315 Sum_probs=206.4
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+++.||...|..+++.+. ..+++++.||++++|+-...+.+
T Consensus 6 ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l------------------------------------ 48 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYL------------------------------------ 48 (745)
T ss_pred eEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccc------------------------------------
Confidence 44678999999999998754 48999999999999986444321
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE-EEEcC-CC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcE
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD-LSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYV 431 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~-l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V 431 (755)
..+.+.+|.+-|.. ++|-+ ++ .|++|++|.+|.+|.+.+..++.++ +|...|
T Consensus 49 ------------------------~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snV 104 (745)
T KOG0301|consen 49 ------------------------ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNV 104 (745)
T ss_pred ------------------------cceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccce
Confidence 13456677777776 77775 33 8999999999999999999999888 599999
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 432 ~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
.|+.... ++. +++||.|.++++|-+..... .+.+|...|.++..-|.+ .+++|+.|.+|++|.- ++++.+
T Consensus 105 C~ls~~~-~~~-~iSgSWD~TakvW~~~~l~~-~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~t---- 174 (745)
T KOG0301|consen 105 CSLSIGE-DGT-LISGSWDSTAKVWRIGELVY-SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKT---- 174 (745)
T ss_pred eeeecCC-cCc-eEecccccceEEecchhhhc-ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhh----
Confidence 9999876 555 99999999999998765433 388999999999999988 8899999999999986 333332
Q ss_pred ecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 512 LQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 512 ~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
...|...|.++++-+ ...+++++.||.|++|+.. ....+.. .+|...|.+++...++..|+++++|++++|
T Consensus 175 ----f~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~-ge~l~~~--~ghtn~vYsis~~~~~~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 175 ----FSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLD-GEVLLEM--HGHTNFVYSISMALSDGLIVSTGEDRTLRI 245 (745)
T ss_pred ----hccchhheeeeEEec--CCCeEeecCCceEEEEecc-Cceeeee--eccceEEEEEEecCCCCeEEEecCCceEEE
Confidence 345788999999986 3579999999999999983 3344444 789999999998889999999999999999
Q ss_pred EEcCCCCcccC-CCccccceeeee
Q 004410 592 WNYSNQDKSSS-RSKSIWSCESFL 614 (755)
Q Consensus 592 Wd~~~~~~~~~-~~~~~~~~~~f~ 614 (755)
|+...-..... ...++|++....
T Consensus 246 W~~~e~~q~I~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 246 WKKDECVQVITLPTTSIWSAKVLL 269 (745)
T ss_pred eecCceEEEEecCccceEEEEEee
Confidence 99873322223 333677765443
No 142
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.4e-19 Score=183.39 Aligned_cols=308 Identities=22% Similarity=0.327 Sum_probs=216.2
Q ss_pred ccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccc--cccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSREL--SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 236 ~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
..+.++.|.++.. .||+|+.|..|+||.+......- ....-...|..|..+|+++.|+|+|.+||+|+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 3456688888877 99999999999999876443222 12223345778999999999999999999999999999998
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
...-.. +. ... ...... ........+.+|...|.
T Consensus 94 ~~~~~~---~~---~d~--------------e~~~~k--------------------------e~w~v~k~lr~h~~diy 127 (434)
T KOG1009|consen 94 QGDVRI---FD---ADT--------------EADLNK--------------------------EKWVVKKVLRGHRDDIY 127 (434)
T ss_pred ecCcCC---cc---ccc--------------hhhhCc--------------------------cceEEEEEecccccchh
Confidence 653110 00 000 000000 00112456778999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc--
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-- 468 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~-- 468 (755)
+++|+|++ ++++++.|..+++||+..|+.+..+. |..+|..++|.| -.+++++-+.|...+++.+...+++....
T Consensus 128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~ 206 (434)
T KOG1009|consen 128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLD 206 (434)
T ss_pred hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeee
Confidence 99999999 99999999999999999999999884 999999999999 89999999999988888776544332111
Q ss_pred ------------------C----CcceEEEEEccCCCeEEEEeC----CCc-----EEEEECCCCeEeeeeeEEeccccc
Q 004410 469 ------------------I----REIVSAVCYCPDGKGGIVGTM----TGN-----CRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 469 ------------------~----~~~V~~v~~spdg~~la~gs~----dg~-----I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
| ..-...++|+|||..+++... .+. .++|+-. .+...... ..
T Consensus 207 ~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk---~l~rP~~~----lp 279 (434)
T KOG1009|consen 207 IMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK---DLKRPAAR----LP 279 (434)
T ss_pred EeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc---cccCceee----cC
Confidence 0 112456789999999988542 222 2333322 11111111 12
Q ss_pred CCCCCeEEEEEcCC----------------CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEE
Q 004410 518 LPGKRITGFQFSPS----------------DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 518 ~~~~~I~~v~fsp~----------------d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
........+.|+|- --+++++......|.|||.++....+... .-|-..|++++|++||.+|+
T Consensus 280 ~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~-nihy~~iTDiaws~dg~~l~ 358 (434)
T KOG1009|consen 280 SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVD-NIHYSAITDIAWSDDGSVLL 358 (434)
T ss_pred CCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEe-eeeeeeecceeecCCCcEEE
Confidence 23344555555541 11344455556789999998866655543 44778999999999999999
Q ss_pred EEeCCCcEEEEEcCCCC
Q 004410 582 SPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~ 598 (755)
..|.||...+--++..+
T Consensus 359 vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 359 VSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EeccCCceEEEEEcchh
Confidence 99999999888887765
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=4.9e-20 Score=184.72 Aligned_cols=240 Identities=19% Similarity=0.279 Sum_probs=181.3
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccc---------cccccceeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccC
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSREL---------SSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~---------~~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~ 315 (755)
+..+.|+-+..|+|+||++....+.+ .......++.+|.+.=+.|+|||-. ..|+||.--+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 44566777889999999976433222 2233445678999999999999932 2478888888999999877
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
+.... . ...|.+|+..|-+|+
T Consensus 244 g~W~v--------------------------------------------------------d---~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 244 GSWKV--------------------------------------------------------D---QRPFTGHTKSVEDLQ 264 (440)
T ss_pred Cceee--------------------------------------------------------c---Cccccccccchhhhc
Confidence 64210 0 123567999999999
Q ss_pred EcCCC--eEEEEeCCCcEEEEeCCCC---eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe---EE-Ee
Q 004410 396 WSKNG--FLLSSSADKTVRLWQVGID---RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ---VV-DY 466 (755)
Q Consensus 396 ~s~~~--~L~s~s~Dg~V~iWdl~s~---~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~---~~-~~ 466 (755)
|+|.. .|++|+.||+|+|||++.+ .++.+-.|...|+.|.|+. ...+|++|+.||+++|||++.-+ .+ .+
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f 343 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATF 343 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeE
Confidence 99966 9999999999999999988 5666667999999999998 77799999999999999998643 33 78
Q ss_pred ccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeE-----------eeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 467 TDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQL-----------YQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 467 ~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~-----------~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
..|+.+|++|.|+| +...|++++.|..|.+||+....- ++.....+.- .....+.+..+.|+++-+.
T Consensus 344 k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 344 KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred EeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEE-EecchhHhhhheeccCCCC
Confidence 88999999999999 456788899999999999963321 0000000000 0112456888999999999
Q ss_pred EEEEEECCCcEE
Q 004410 535 KVIVTSADSLVR 546 (755)
Q Consensus 535 ~l~s~s~Dg~I~ 546 (755)
+|++++.||.-.
T Consensus 423 ~lvsTa~dGfnV 434 (440)
T KOG0302|consen 423 LLVSTAIDGFNV 434 (440)
T ss_pred eEEEecccceeE
Confidence 999999888543
No 144
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=3.7e-19 Score=190.71 Aligned_cols=344 Identities=15% Similarity=0.165 Sum_probs=247.8
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~v 310 (755)
+.+|.|.|.++.|+|.+..|++++.|.++.||.-.+........-..-++-|..+.-+...|+|+++.+++-+.-|-.++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 45899999999999999999999999999999876553221111111223355667899999999999999999999999
Q ss_pred EEccCCe---eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 311 WKVIEHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 311 Wdv~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|...+.. ....+..+...+..+.|.+.+. ..+..+.|.+..++.+-..+..--.+..-+-|
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe----------------flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH 406 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE----------------FLLSVSLDQTTRLFARWGRQQEWHEIARPQIH 406 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCC----------------EEEEeccccceeeecccccccceeeecccccc
Confidence 9833321 1122333444455555554442 23344444444444333111111223344568
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-----------------------------------------------
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID----------------------------------------------- 419 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~----------------------------------------------- 419 (755)
...++|+++-+.. .+++|...+.+|+|+....
T Consensus 407 GyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~ 486 (764)
T KOG1063|consen 407 GYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA 486 (764)
T ss_pred cccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence 8899999999855 9999999999999976310
Q ss_pred ------------------------------eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEEcCCCeEE
Q 004410 420 ------------------------------RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVV 464 (755)
Q Consensus 420 ------------------------------~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~~~~ 464 (755)
+..+.++|...|++++.+| +++++++++... .|++|+..+-..+
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~ 565 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQV 565 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhh
Confidence 0001234888999999999 999999988654 5999999887666
Q ss_pred -EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 465 -DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 465 -~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.+..|.-.|+.++|+|||++|++.+.|.++.+|......... +. ....+.|..-|.++.|+| ++.++++++.|.
T Consensus 566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-~~---fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK 640 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-FR---FACLKAHTRIIWDCSWSP-DEKYFATASRDK 640 (764)
T ss_pred heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-hh---hccccccceEEEEcccCc-ccceeEEecCCc
Confidence 488899999999999999999999999999999885443221 11 112456788899999999 888999999999
Q ss_pred cEEEEECCcc--eeeEEEeeeccCCceEEEEEecC-----CCEEEEEeCCCcEEEEEcCC
Q 004410 544 LVRVLCGENV--VGKFKASAFRVAGSQMFATFTSD-----GKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 544 ~I~iwd~~~~--~~~~~~~~~~~~~~v~~l~fspd-----g~~L~sgs~Dg~I~iWd~~~ 596 (755)
+|+||...+. ..........+...|+.++|.|- +..++.|-+.|.|.||....
T Consensus 641 ~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 641 KVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred eEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence 9999998765 22222233667889999998762 33678888999999999763
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=2.5e-19 Score=174.16 Aligned_cols=227 Identities=22% Similarity=0.371 Sum_probs=175.6
Q ss_pred cccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 282 AHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 282 ~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.|.+.|+++...+ .|+|+++|+.||.|.|||++.......-.. +.+.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l---------------------------i~k~----- 88 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL---------------------------IAKH----- 88 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc---------------------------eehe-----
Confidence 4889999999988 689999999999999999976532110000 0000
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEee
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp 438 (755)
.+. .....-.+|.-.|..+.|-|-. .+.+++-|.++++||..+-+....|...+.|.+-+++|
T Consensus 89 ----~c~-----------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp 153 (397)
T KOG4283|consen 89 ----KCI-----------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSP 153 (397)
T ss_pred ----eee-----------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcCh
Confidence 000 0012235799999999999944 99999999999999999999999999999999999998
Q ss_pred CC--CCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCe-EEEEeCCCcEEEEECCCC-eEeeeeeE---
Q 004410 439 VD--DNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKDN-QLYQQNQI--- 510 (755)
Q Consensus 439 ~d--~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~-la~gs~dg~I~iwD~~~~-~~~~~~~~--- 510 (755)
.. ..++++|..|-+|++.|+..+... .+.+|...|.++.|+|...+ |++|+.||.|++||++.. ........
T Consensus 154 ~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~ 233 (397)
T KOG4283|consen 154 MAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT 233 (397)
T ss_pred hhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC
Confidence 43 356788888899999999999887 68899999999999997665 678999999999999854 11111100
Q ss_pred ---EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceee
Q 004410 511 ---CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGK 556 (755)
Q Consensus 511 ---~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~ 556 (755)
+.......|.+.+.+++|.. ++.++++++.|..+++|+..+....
T Consensus 234 k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 234 KRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred ccCccccccccccceeeeeeecc-cchhhhhccCccceEEeecccCccc
Confidence 01112346788999999999 9999999999999999997765433
No 146
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=8e-20 Score=195.40 Aligned_cols=250 Identities=21% Similarity=0.269 Sum_probs=201.7
Q ss_pred ccccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec---CCCEEE
Q 004410 224 WLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYLA 300 (755)
Q Consensus 224 w~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp---dg~~La 300 (755)
..|...........+.+++++|+|++||+|..-|.++||++.... ..-.+.+|+..|.|+.||. ..++||
T Consensus 448 fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-------~~~~~eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 448 FDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-------YTCFMEAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred ccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-------hhhheecccceeEEEeecCchhhhHhhh
Confidence 334444444445667889999999999999999999999975432 2234789999999999986 357999
Q ss_pred EEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
+|+.|..|+|+|+...- .+
T Consensus 521 SasrdRlIHV~Dv~rny-------------------------------------------------------------~l 539 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNY-------------------------------------------------------------DL 539 (1080)
T ss_pred hccCCceEEEEeccccc-------------------------------------------------------------ch
Confidence 99999999999985431 23
Q ss_pred ceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCCeEEEEEe------cCCcEEEEEEeeCCCCEEEEEeCCC
Q 004410 381 LHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDG 451 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~~~~~~~~------h~~~V~~i~fsp~d~~~l~sgs~Dg 451 (755)
+.++.+|...|+++.|.-+| .+++++.|+.|.+=-.+....-..|. ....++.+++.| ...++++++.|.
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDR 618 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEeccc
Confidence 67788999999999998877 89999999987643322111111221 345689999999 899999999999
Q ss_pred cEEEEEcCCCeEEEe----ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 452 KVRIWEVRRCQVVDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 452 ~V~iwdl~~~~~~~~----~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
.|+|||+..++.+.. .++.+....+...|.|.||++.+.|.++.+||..+++++.. ...|...|+++.
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~--------m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ--------MTGHSEAVTGVK 690 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh--------hcCcchheeeee
Confidence 999999999988743 34556788899999999999999999999999999988753 456888999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
|.+ |-+.|++.+.||.|.||.+.
T Consensus 691 F~n-DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 691 FLN-DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ecc-cchhheeecCCceEEEEECc
Confidence 999 99999999999999999855
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.8e-18 Score=184.00 Aligned_cols=250 Identities=16% Similarity=0.239 Sum_probs=205.0
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
...|.+|+|+.+.+.||.+-.||.|-||++..+=..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~-------------------------------------------- 60 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL-------------------------------------------- 60 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCcee--------------------------------------------
Confidence 357999999999999999999999999998653211
Q ss_pred ceEEEeCCcceeccCccceEecC-CCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCC
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD 441 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~ 441 (755)
...+.+ ....|-.|+|++.+.|.+.+.+|.|.-||+.+.+.+..+. ..+.|.+++.+| .+
T Consensus 61 -----------------~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~ 122 (691)
T KOG2048|consen 61 -----------------EPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-EN 122 (691)
T ss_pred -----------------eEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-cc
Confidence 112233 3467999999988899999999999999999999988885 678999999999 88
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEE---eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 442 NYFISGSIDGKVRIWEVRRCQVVD---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 442 ~~l~sgs~Dg~V~iwdl~~~~~~~---~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
..++.|+.||.+..++...+.+.. +...++.|.+++|+|++..|+.|+.||.|++||...+.........+.+..+.
T Consensus 123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR 202 (691)
T ss_pred ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC
Confidence 999999999988888888777663 34456889999999999999999999999999999988766333333333333
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...-|+++.|. ....|++|...|+|.+||.......... ..|.+.|.+++..+++.++++++.|+.|..|...+..
T Consensus 203 ~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~--~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 203 EPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSH--SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred CceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhh--hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 44567888887 3478999999999999998765443333 5588999999999999999999999999999988875
Q ss_pred c
Q 004410 599 K 599 (755)
Q Consensus 599 ~ 599 (755)
+
T Consensus 279 ~ 279 (691)
T KOG2048|consen 279 S 279 (691)
T ss_pred c
Confidence 3
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=7.4e-20 Score=188.88 Aligned_cols=237 Identities=17% Similarity=0.240 Sum_probs=205.4
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
+.++++.+.|||+.|++|+.-.++.|||+......+. .++..-.-...+++.+||.++.+++..||.|.|||+.+
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprik-----aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchh-----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence 3467788999999999999999999999875443222 22333344678899999999999999999999999976
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
... +..|.||...+.||.
T Consensus 541 q~~--------------------------------------------------------------VrqfqGhtDGascId 558 (705)
T KOG0639|consen 541 QTL--------------------------------------------------------------VRQFQGHTDGASCID 558 (705)
T ss_pred cee--------------------------------------------------------------eecccCCCCCceeEE
Confidence 543 566789999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceE
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS 474 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~ 474 (755)
.+++| .|.+|+-|.+||.||++++..+........|.++-.+| .+++++.|-.++.|.|......+..++..|...|.
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheScVL 637 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVL 637 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccccEEE
Confidence 99999 99999999999999999999888888889999999999 99999999999999999998888888889999999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 475 AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 475 ~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
++.|.+.|+++++.+.|+-+..|.+.-+..+.+. .....|.++.++- +.++|++|+.|....||.+
T Consensus 638 SlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs---------kE~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 638 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---------KESSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEecccCceeeecCchhhhhhccCccccceeec---------cccCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 9999999999999999999999999887765421 2356899999998 8899999999988888753
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=7.2e-19 Score=185.83 Aligned_cols=124 Identities=17% Similarity=0.288 Sum_probs=107.0
Q ss_pred ceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 472 IVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 472 ~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
.|+.+.|.| |...||+++.||.|++|.+..+.+.... ....+....|...|+.+.|+|--...|++++.|.+|++||+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~-~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE-MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCccc-CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 478888999 7889999999999999999876654321 22334456788999999999988889999999999999999
Q ss_pred CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 551 ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 551 ~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+....... .+|.+.|.+++|||||+.+++.+.||+|++|+-..++
T Consensus 708 ~~~~~~~~l--~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 708 ANAKLYSRL--VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhhhhee--ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 987776666 8899999999999999999999999999999988776
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=7.8e-19 Score=186.68 Aligned_cols=217 Identities=19% Similarity=0.293 Sum_probs=159.8
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEE---EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV---FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~---~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
+..+..|.+.|.++.|.|.. .|++++.|.++++||+.+..+... ++|...|.+++|.|.+...|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 44567899999999999955 999999999999999999988776 47999999999999999999999999999999
Q ss_pred EcCCCeE----------------------------EEeccCCcceEE---EEEccCCCeEEEEeC-CCcEEEEECCCCeE
Q 004410 457 EVRRCQV----------------------------VDYTDIREIVSA---VCYCPDGKGGIVGTM-TGNCRFYDIKDNQL 504 (755)
Q Consensus 457 dl~~~~~----------------------------~~~~~~~~~V~~---v~~spdg~~la~gs~-dg~I~iwD~~~~~~ 504 (755)
|++-..+ ..+..+...|.+ +.+..|...||+++. |+.|+|||++.+..
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 9974220 012223334444 556678888998877 99999999998765
Q ss_pred eeeeeEEecccccCC---CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC--CceEEEEEecCCCE
Q 004410 505 YQQNQICLQGKKKLP---GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA--GSQMFATFTSDGKH 579 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~---~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~--~~v~~l~fspdg~~ 579 (755)
.....-.-......+ ...++++.... .|.++++.+.|+.|++|++........+...++. .--..-..+||+.+
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 432211111111112 34567777766 5677777777999999998865444333222221 11223456899999
Q ss_pred EEEEeCCCcEEEEEcCCCC
Q 004410 580 VVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 580 L~sgs~Dg~I~iWd~~~~~ 598 (755)
|++|+.|...++|.+++.+
T Consensus 332 l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EeccCCCcceeeeeecCcc
Confidence 9999999999999999876
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=1.7e-18 Score=183.97 Aligned_cols=272 Identities=15% Similarity=0.214 Sum_probs=210.5
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
.+..++|.|||..|+.+..+ ++.|||.+.+. ..|+++||++.|.|++|+.||+.+|+|+.|+.|.||+-.-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcc-------cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 45559999999988876654 79999987654 34679999999999999999999999999999999974321
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
.. --..|...|.|+.|
T Consensus 86 G~----------------------------------------------------------------LkYSH~D~IQCMsF 101 (1081)
T KOG1538|consen 86 GI----------------------------------------------------------------LKYSHNDAIQCMSF 101 (1081)
T ss_pred ce----------------------------------------------------------------eeeccCCeeeEeec
Confidence 10 01359999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE---eccCCcc
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDIREI 472 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---~~~~~~~ 472 (755)
+|-. .|++++-. ..-+|....... ........|.+.+|.. ||.+|+.|-.||+|.|-+-...+.+. -.+...+
T Consensus 102 NP~~h~LasCsLs-dFglWS~~qK~V-~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nsp 178 (1081)
T KOG1538|consen 102 NPITHQLASCSLS-DFGLWSPEQKSV-SKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSP 178 (1081)
T ss_pred CchHHHhhhcchh-hccccChhhhhH-HhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCC
Confidence 9988 78877753 355787654332 2334567789999998 99999999999999998765544443 2346778
Q ss_pred eEEEEEccCC-----CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 473 VSAVCYCPDG-----KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 473 V~~v~~spdg-----~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
|.+++|+|.. ..+++.....++.+|.+.....- +...-+-...++++.| ++.++++|+.|+.+.+
T Consensus 179 iwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig---------k~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~ 248 (1081)
T KOG1538|consen 179 IWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG---------KDRALNFDPCCISYFT-NGEYILLGGSDKQLSL 248 (1081)
T ss_pred ceEEEecCCCCCCccceEEEEeccceeEEEEecceeec---------ccccCCCCchhheecc-CCcEEEEccCCCceEE
Confidence 9999999952 57888888999999988754332 1222234557889999 9999999999999999
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
|.-.. ...+........|+.++..|++++++.|+.||+|..|++..
T Consensus 249 fTR~G---vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 249 FTRDG---VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EeecC---eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 96543 22333344677999999999999999999999999999754
No 152
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=3.4e-17 Score=173.09 Aligned_cols=253 Identities=15% Similarity=0.125 Sum_probs=178.8
Q ss_pred CcceeecCCCCee-EEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEE-cCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~l-asgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSg-s~Dg~I~vWdv~~ 315 (755)
+..++|+|+++.+ +++..++.|++|+...... .+.+..|.. +..++|+|+++.|+++ +.|+.|++||+.+
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-------~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-------IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-------EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 4569999999976 5677899999999775432 122333333 5678999999977655 5689999999976
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
.+.+..+ . +...+.+++
T Consensus 105 ~~~~~~~--------------------------------------------------------------~-~~~~~~~~~ 121 (300)
T TIGR03866 105 RKVLAEI--------------------------------------------------------------P-VGVEPEGMA 121 (300)
T ss_pred CeEEeEe--------------------------------------------------------------e-CCCCcceEE
Confidence 5433211 1 112356799
Q ss_pred EcCCC-eEEEEeCCC-cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCcEEEEEcCCCeEEEecc-C--
Q 004410 396 WSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRRCQVVDYTD-I-- 469 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg-~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~V~iwdl~~~~~~~~~~-~-- 469 (755)
|+|++ .+++++.++ .+.+||..+++.+........+.+++|+| ++.+|+ ++..++.|++||+.+++.+.... +
T Consensus 122 ~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 200 (300)
T TIGR03866 122 VSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP 200 (300)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc
Confidence 99999 777777664 57788999888877665556678899999 888775 44569999999999987653221 1
Q ss_pred -----CcceEEEEEccCCCeEEEE-eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE-ECC
Q 004410 470 -----REIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT-SAD 542 (755)
Q Consensus 470 -----~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~-s~D 542 (755)
......++|+|+++.++++ ..++.+.+||+.+++...... +...+.++.|+| ++.+|+++ ..+
T Consensus 201 ~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---------~~~~~~~~~~~~-~g~~l~~~~~~~ 270 (300)
T TIGR03866 201 GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL---------VGQRVWQLAFTP-DEKYLLTTNGVS 270 (300)
T ss_pred ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE---------eCCCcceEEECC-CCCEEEEEcCCC
Confidence 1124568899999986654 456789999999877653211 234688999999 77787776 568
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
+.|.+||..+........ .....+.++|+|
T Consensus 271 ~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~ 300 (300)
T TIGR03866 271 NDVSVIDVAALKVIKSIK---VGRLPWGVVVRP 300 (300)
T ss_pred CeEEEEECCCCcEEEEEE---cccccceeEeCC
Confidence 999999998865544432 234457777654
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=2.9e-18 Score=169.40 Aligned_cols=291 Identities=20% Similarity=0.294 Sum_probs=209.2
Q ss_pred eeccCcceeecC----CC-CeeEEeeCCCeEEEEECCCCcccccccccceeee--cccccEEEEEEecC----CCEEEEE
Q 004410 234 IIDRHGSATLKP----GD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGSILTMKFSLD----GQYLASG 302 (755)
Q Consensus 234 ~~~~~~~~~~sp----dg-~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~--~H~~~V~~l~fspd----g~~LaSg 302 (755)
|...+..++|.+ +. ..+|+.+ ..++.+|....... . ...|.+. .|...-..++|+-| ..+||.|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~-i---r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGG-I---RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccc-e---eeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 344455567663 22 2444444 45788888764431 1 1112221 47888899999775 3489999
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
|.-|.|+|.|+.+++. ..
T Consensus 112 G~~GvIrVid~~~~~~--------------------------------------------------------------~~ 129 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQC--------------------------------------------------------------SK 129 (385)
T ss_pred cceeEEEEEecchhhh--------------------------------------------------------------cc
Confidence 9999999999987754 23
Q ss_pred EecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
.+.+|...|..|.++|+. +++++|.|..||+|++++..|+.+|+ |.+.|.++.|++ ++.+|++++.|..|++|
T Consensus 130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W 208 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLW 208 (385)
T ss_pred ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEE
Confidence 467899999999999988 99999999999999999999999995 999999999999 99999999999999999
Q ss_pred EcCCCeEE-----------------------------EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECC-CCeE--
Q 004410 457 EVRRCQVV-----------------------------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQL-- 504 (755)
Q Consensus 457 dl~~~~~~-----------------------------~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~-~~~~-- 504 (755)
++...+.. ....|...|.|+.| -|.++++=+-++.|..|..- -.+.
T Consensus 209 ~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~ 286 (385)
T KOG1034|consen 209 RLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIH 286 (385)
T ss_pred ecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhh
Confidence 99843211 01123444555555 35788888888999999872 1111
Q ss_pred ---eeeeeEEecccccCCCCCeEEE--EEcCCCCCEEEEEECCCcEEEEECCcceeeE--EEeeeccCCceEEEEEecCC
Q 004410 505 ---YQQNQICLQGKKKLPGKRITGF--QFSPSDPSKVIVTSADSLVRVLCGENVVGKF--KASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 505 ---~~~~~~~~~~~~~~~~~~I~~v--~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~--~~~~~~~~~~v~~l~fspdg 577 (755)
..+......+........|.-+ +|.| -.++|+.|...|.|.+||+....... ..........|...+|+.||
T Consensus 287 ~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 287 NVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG 365 (385)
T ss_pred ccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC
Confidence 1111112233344455556554 4556 67899999999999999998755422 11112344578899999999
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 004410 578 KHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 578 ~~L~sgs~Dg~I~iWd~~ 595 (755)
.+|+...+|++|--||.-
T Consensus 366 s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 366 SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cEEEEEeCCCcEEEEEee
Confidence 999999999999999864
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=3.2e-18 Score=175.83 Aligned_cols=259 Identities=17% Similarity=0.205 Sum_probs=194.7
Q ss_pred cceeeecccccEEEEEEecCC--CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 276 TGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg--~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
..+.+.-|.+.|++++|+|.. +++|+|..-|.|-+||+.+.+..
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------------------------- 223 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------------------------- 223 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc----------------------------------
Confidence 345567789999999999954 58899999999999999633210
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe---cC
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HN 428 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~ 428 (755)
..-+..+..|..+|.+|.|+|.+ .+++.++||+|++-|++....-..+. ..
T Consensus 224 ------------------------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~ 279 (498)
T KOG4328|consen 224 ------------------------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN 279 (498)
T ss_pred ------------------------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccc
Confidence 01134567899999999999987 99999999999999998776544443 45
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE--EEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--VDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~--~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
..+..++|+. +...++.+..=|.+.+||+++... -.+.-|...|++|+++| ...+||+++.|++.+|||++.-...
T Consensus 280 ~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K 358 (498)
T KOG4328|consen 280 IWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK 358 (498)
T ss_pred eeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC
Confidence 5678888887 666666666667999999997654 35677888999999999 4567899999999999999864433
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC---cceeeEEEeeeccC----CceEEEEEecCCC
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE---NVVGKFKASAFRVA----GSQMFATFTSDGK 578 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~---~~~~~~~~~~~~~~----~~v~~l~fspdg~ 578 (755)
....+ ....|...|.+..|+|.++. |++.+.|..|+|||.. ..........+.+. -....+.|.|+..
T Consensus 359 ~sp~l----st~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~ 433 (498)
T KOG4328|consen 359 ASPFL----STLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN 433 (498)
T ss_pred CCcce----ecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCcc
Confidence 21001 12347789999999996666 9999999999999984 11111111001111 1345678999999
Q ss_pred EEEEEeCCCcEEEEEcCCCC
Q 004410 579 HVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 579 ~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|++|-.-..|-|+|-+.++
T Consensus 434 li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 434 LIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred EEEEeccCcceeEEcCCCCE
Confidence 99999999999999987776
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=6e-19 Score=199.57 Aligned_cols=249 Identities=16% Similarity=0.249 Sum_probs=197.1
Q ss_pred ccCcceeecCCCCe----eEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-CEEEEEcCCCcEEE
Q 004410 236 DRHGSATLKPGDHE----LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRV 310 (755)
Q Consensus 236 ~~~~~~~~spdg~~----lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~v 310 (755)
.+...++|.+.|.. +|.|..||.|.+|+..+-.. -.......++..|++.|..+.|++.. ++||+|+.||.|.|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc-CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 44556888888776 88899999999999775311 11223345677899999999999965 59999999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+..-+...... -....+.
T Consensus 144 WDlnn~~tP~~~~------------------------------------------------------------~~~~~~e 163 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG------------------------------------------------------------SQAPPSE 163 (1049)
T ss_pred eccCCcCCCCCCC------------------------------------------------------------CCCCccc
Confidence 9997643211100 0124578
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecC---CcEEEEEEeeCCCCEEEEEeCCC---cEEEEEcCCCe
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQ 462 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~---~~V~~i~fsp~d~~~l~sgs~Dg---~V~iwdl~~~~ 462 (755)
|.+++|+..- .|++++.+|.+.|||++..+.+..+... ..+..++|+|.+...+++++.|. .|.+||+|...
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 9999999866 8889999999999999999887777522 34889999997778888888775 59999998543
Q ss_pred --EEEeccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 463 --VVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 463 --~~~~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
+..+..|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+.++ ...+..+..+.|+|.++..+++.
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~--------p~~~nW~fdv~w~pr~P~~~A~a 315 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL--------PAQGNWCFDVQWCPRNPSVMAAA 315 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec--------CCCCcceeeeeecCCCcchhhhh
Confidence 33457899999999999955 88899999999999999999887542 33567899999999888999999
Q ss_pred ECCCcEEEEECCcc
Q 004410 540 SADSLVRVLCGENV 553 (755)
Q Consensus 540 s~Dg~I~iwd~~~~ 553 (755)
+-||.|.|+.+...
T Consensus 316 sfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 316 SFDGKISIYSLQGT 329 (1049)
T ss_pred eeccceeeeeeecC
Confidence 99999999987653
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.7e-18 Score=172.75 Aligned_cols=246 Identities=15% Similarity=0.244 Sum_probs=196.4
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
.+.|++|.|+|...+|++|+.|++++||.+.....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------------------------- 247 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------------------------- 247 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC---------------------------------------------
Confidence 46899999999999999999999999999854321
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEe
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFN 437 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fs 437 (755)
..++.+.--..+|.+++|.|+| .+++++....++.||+.+.+..+.-. ....+....++
T Consensus 248 ---------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS 312 (514)
T KOG2055|consen 248 ---------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS 312 (514)
T ss_pred ---------------hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEec
Confidence 1133333446789999999999 78899999999999999887765542 33467888899
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 438 p~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
| ++++|+..+..|.|.+....+++.+......+.|..++|+.||+.|++.+.+|.|.+||++...++..+.. .+
T Consensus 313 h-d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D--~G--- 386 (514)
T KOG2055|consen 313 H-DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD--DG--- 386 (514)
T ss_pred C-CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee--cC---
Confidence 9 99999999999999999999999998888899999999999999999999999999999999977654432 11
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce----eeEEEeeeccCCceEEEEEecCCCEEEEEe--CCCcEEE
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV----GKFKASAFRVAGSQMFATFTSDGKHVVSPS--EDSNIYI 591 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~----~~~~~~~~~~~~~v~~l~fspdg~~L~sgs--~Dg~I~i 591 (755)
.-.-+.++.++ ++.++++|+..|.|.|||..+.. .+...........|+++.|++|++.|+.+| .+..+++
T Consensus 387 --~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 387 --SVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred --ccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 11335677778 88999999999999999966421 111111234556899999999999988776 4667888
Q ss_pred EEcCCCC
Q 004410 592 WNYSNQD 598 (755)
Q Consensus 592 Wd~~~~~ 598 (755)
-.+.+-.
T Consensus 464 VHvPS~T 470 (514)
T KOG2055|consen 464 VHVPSCT 470 (514)
T ss_pred Eecccee
Confidence 8776543
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=2.5e-18 Score=177.57 Aligned_cols=219 Identities=16% Similarity=0.256 Sum_probs=181.2
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
...|++......++++|+..+.|+|||++.. .+.+.+.+|+..|++|.++-...|||+++..|.|.|..+.++
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~ 153 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK-------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK 153 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHH-------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence 3445666666689999999999999997621 234568899999999999999999999999999999999887
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
....++.. +....|.-+.|
T Consensus 154 ~~tt~f~~-------------------------------------------------------------~sgqsvRll~y 172 (673)
T KOG4378|consen 154 QKTTTFTI-------------------------------------------------------------DSGQSVRLLRY 172 (673)
T ss_pred ccccceec-------------------------------------------------------------CCCCeEEEeec
Confidence 64333221 11234567889
Q ss_pred cCCC--eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcc
Q 004410 397 SKNG--FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI 472 (755)
Q Consensus 397 s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~ 472 (755)
++.. +|.+++.+|.|.+||+....++..+ .|..+...|+|+|.+..+|++.+.|.+|.+||++............+
T Consensus 173 s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P 252 (673)
T KOG4378|consen 173 SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP 252 (673)
T ss_pred ccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC
Confidence 9987 7888999999999999988887777 49999999999998899999999999999999998887776777788
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
.++++|.++|.+|++|+..|.|..||++..+.... ....|...|++++|-|
T Consensus 253 lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~-------v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 253 LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA-------VRSAHDASVTRVAFQP 303 (673)
T ss_pred cceeeecCCceEEEeecCCceEEEEecccCCCCce-------EeeecccceeEEEeee
Confidence 99999999999999999999999999997654322 1334667799999988
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.6e-18 Score=169.01 Aligned_cols=280 Identities=17% Similarity=0.241 Sum_probs=196.1
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCcEEEEEccCCeeeeeeecC
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
..+|++..+|.|++||..+.. ..+++.+|...+..++|.. .+..+.+|+.||+|++||+........+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~--- 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI--- 110 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe---
Confidence 568899999999999976532 3457889999999999977 4678999999999999999876543222
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC-CCEEEEEEcCCC-eEE
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLL 403 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~s~~~-~L~ 403 (755)
.+.+|. .+..+++-.-.+ .++
T Consensus 111 ---------------------------------------------------------~~~~~~~~~f~~ld~nck~~ii~ 133 (376)
T KOG1188|consen 111 ---------------------------------------------------------SWTQQSGTPFICLDLNCKKNIIA 133 (376)
T ss_pred ---------------------------------------------------------eccCCCCCcceEeeccCcCCeEE
Confidence 222333 344555554334 555
Q ss_pred EEe----CCCcEEEEeCCCCeE-EEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----EEEeccCCcc
Q 004410 404 SSS----ADKTVRLWQVGIDRC-LRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTDIREI 472 (755)
Q Consensus 404 s~s----~Dg~V~iWdl~s~~~-~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~~~~~~~~~ 472 (755)
+|. .+-.|.+||++..+. +..+ .|.+.|+++.|+|.+.++|++|+.||.|.|+|+.... ++....+...
T Consensus 134 ~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS 213 (376)
T KOG1188|consen 134 CGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS 213 (376)
T ss_pred eccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence 543 456799999998776 6666 4999999999999999999999999999999997642 3456677888
Q ss_pred eEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecc----cccCCCCCeEEEEEcCCCCCEEEEEEC-CCcEE
Q 004410 473 VSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG----KKKLPGKRITGFQFSPSDPSKVIVTSA-DSLVR 546 (755)
Q Consensus 473 V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~----~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~ 546 (755)
|..+.|..++ +.|.+-+..++..+|++..+............ ........+.. ..+|.+....++++. -+...
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~ 292 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGT 292 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCcee
Confidence 9999999887 56888899999999999988754322211000 00000111111 234555566655554 55555
Q ss_pred EEECCc-----ceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 547 VLCGEN-----VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 547 iwd~~~-----~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
++-... ..........+|...|.++.|...+.++.||++||.+.+|...
T Consensus 293 ~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 293 IFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred EEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 554332 1111111113466778889999999999999999999999973
No 159
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.1e-17 Score=176.75 Aligned_cols=272 Identities=18% Similarity=0.273 Sum_probs=204.0
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
-.+.||++.|.+|...|.|.+||+|+.||+|+||.+.++.++..+.... .+.+++|.+.....++++.....
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~------- 465 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGEC------- 465 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCc-------
Confidence 3578999999999999999999999999999999999999998887644 67888888887776666544322
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEE----eCCCcEEEEeCCC---C--eEEEEEecC
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS----SADKTVRLWQVGI---D--RCLRVFSHN 428 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~----s~Dg~V~iWdl~s---~--~~~~~~~h~ 428 (755)
+++.++..... + +.+ ..+..|+++ ..++.+..|.-.. . ....++.|.
T Consensus 466 --------~~ivnp~~G~~----~-----e~~-------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~ 521 (733)
T KOG0650|consen 466 --------VLIVNPIFGDR----L-----EVG-------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHP 521 (733)
T ss_pred --------eEEeCccccch----h-----hhc-------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecC
Confidence 12222211100 0 000 001122222 2456777886431 1 123455799
Q ss_pred CcEEEEEEeeCCCCEEEEEeCC---CcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 429 NYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~D---g~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
..|..+.|+. .|+||++...+ ..|.|+++...... .+...++.|.++.|+|.-.+|++++ ...|+|||+..+.+
T Consensus 522 k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqel 599 (733)
T KOG0650|consen 522 KSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQEL 599 (733)
T ss_pred Cccceeeeec-CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHH
Confidence 9999999998 99999997664 46999999877655 4567788899999999999999987 46899999988766
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
+.. .......|..++++| .|..|++++.|+.+..+|+.-....++.. ..|...+++++|++.-.++++|+
T Consensus 600 vKk--------L~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~l-r~H~~avr~Va~H~ryPLfas~s 669 (733)
T KOG0650|consen 600 VKK--------LLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTL-RLHEKAVRSVAFHKRYPLFASGS 669 (733)
T ss_pred HHH--------HhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHh-hhhhhhhhhhhhccccceeeeec
Confidence 543 222346789999999 88999999999999999987654444432 45888999999999999999999
Q ss_pred CCCcEEEEE
Q 004410 585 EDSNIYIWN 593 (755)
Q Consensus 585 ~Dg~I~iWd 593 (755)
.||.+.|+-
T Consensus 670 dDgtv~Vfh 678 (733)
T KOG0650|consen 670 DDGTVIVFH 678 (733)
T ss_pred CCCcEEEEe
Confidence 999999985
No 160
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1.7e-17 Score=167.42 Aligned_cols=265 Identities=23% Similarity=0.282 Sum_probs=189.5
Q ss_pred CCeeEE---eeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeee
Q 004410 247 DHELTL---GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGF 322 (755)
Q Consensus 247 g~~las---gs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~ 322 (755)
.+++|. ++..|...|-.+.+..+.-... -.+.||+++|..++|+| +.+.||+|++|.+|.||++-.+.....+
T Consensus 44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~---P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l 120 (472)
T KOG0303|consen 44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASY---PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL 120 (472)
T ss_pred CceEEEEEecCCCcceeecccccccccCCCC---CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc
Confidence 345554 2334455555544433322222 23679999999999999 6678999999999999998766432221
Q ss_pred ecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--
Q 004410 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-- 400 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-- 400 (755)
..|+..+.||...|--++|+|..
T Consensus 121 -------------------------------------------------------tepvv~L~gH~rrVg~V~wHPtA~N 145 (472)
T KOG0303|consen 121 -------------------------------------------------------TEPVVELYGHQRRVGLVQWHPTAPN 145 (472)
T ss_pred -------------------------------------------------------ccceEEEeecceeEEEEeecccchh
Confidence 25678899999999999999976
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec-cCCc-ceEEEEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIRE-IVSAVCY 478 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~-~~~~-~V~~v~~ 478 (755)
.|++++.|.+|.+||+.+++.+..+.|.+.|+++.|+. +|.+|++.+.|.+|||||.++++++... .|.+ .-..+.|
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif 224 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF 224 (472)
T ss_pred hHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence 89999999999999999999999999999999999998 9999999999999999999999998543 4443 3556778
Q ss_pred ccCCCeEEEEeC---CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee
Q 004410 479 CPDGKGGIVGTM---TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG 555 (755)
Q Consensus 479 spdg~~la~gs~---dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~ 555 (755)
-.+|..+-+|.. +..+-+||..+-.....++ .+ .....|.---|.|+..-..++|-.|+.||.|...+...
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~-el-----DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ-EL-----DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eccCceeeeccccccccceeccCcccccCcceeE-Ee-----ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 888885555543 5678999876543321111 01 12344555556773334455667899999999876442
Q ss_pred eEE-EeeeccCCceEEEEEecC
Q 004410 556 KFK-ASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 556 ~~~-~~~~~~~~~v~~l~fspd 576 (755)
-+. ...+....+...+.|-|.
T Consensus 299 ~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 299 FVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred eeEEecccccCCcccccccccc
Confidence 221 122445566677777664
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=1.3e-17 Score=172.34 Aligned_cols=268 Identities=14% Similarity=0.210 Sum_probs=194.1
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
...+++||+...+....+..+...+....+...+...+.......+++ +..|... ..+.+.|+...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~-------------~~~~~K~-g~~~~Vp~~~k 76 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKV-------------MRIKEKD-GKTPEVPRVRK 76 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCcee-------------EEEeccc-CCCCccceeec
Confidence 347999999887776666655555544444444444443333333322 2222211 11222233222
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
.+-. .-.|++..... ++++|+..+.|+|||++...+.+.+. |...|+++.++- .+.||++++..|.|.|..+.+++
T Consensus 77 ~~gd-~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 77 LTGD-NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred cccc-hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCc
Confidence 2211 33455554445 99999999999999999777777764 999999999998 88999999999999999999987
Q ss_pred EEEeccC--CcceEEEEEccCCCe-EEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 463 VVDYTDI--REIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 463 ~~~~~~~--~~~V~~v~~spdg~~-la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
......+ ...|.-+.|+|..+. |.+++.+|.|.+||+.....+.. ....|..+..+++|+|.+..++++.
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~-------~~~~HsAP~~gicfspsne~l~vsV 227 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH-------ASEAHSAPCRGICFSPSNEALLVSV 227 (673)
T ss_pred cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc-------hhhhccCCcCcceecCCccceEEEe
Confidence 7643333 345668999997654 56689999999999998765432 2445778899999999999999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|..|.+||.......-. .....+...++|+++|.+|+.|...|.|+.||+...+
T Consensus 228 G~Dkki~~yD~~s~~s~~~---l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 228 GYDKKINIYDIRSQASTDR---LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cccceEEEeecccccccce---eeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 9999999999875333222 3355688999999999999999999999999998765
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.4e-18 Score=196.59 Aligned_cols=291 Identities=15% Similarity=0.212 Sum_probs=216.0
Q ss_pred cceeecCCCC-eeEEee----------CCCeEEEEECCCCccc--ccccccceeeecccccEEEEEEecCCCE----EEE
Q 004410 239 GSATLKPGDH-ELTLGQ----------RMRRVRVHPVKKQSRE--LSSLYTGQEFLAHEGSILTMKFSLDGQY----LAS 301 (755)
Q Consensus 239 ~~~~~spdg~-~lasgs----------~dg~V~Vw~~~~~~~~--~~~~~~~~~l~~H~~~V~~l~fspdg~~----LaS 301 (755)
...+|+|.+. ++|+|. .+.++-||.+...... +..... + .-...-+.++|.+.|.. ||.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s---~-~s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGS---L-QSSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccc---c-cccccceeeeecccCCCccceeec
Confidence 3478999987 566553 3455666655432221 121111 1 12345778999987765 899
Q ss_pred EcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccc
Q 004410 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (755)
Q Consensus 302 gs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (755)
|.+||.|.+||...-..- .....+
T Consensus 86 G~edG~I~ly~p~~~~~~--------------------------------------------------------~~~~~l 109 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIAN--------------------------------------------------------ASEEVL 109 (1049)
T ss_pred cccCCceEEecchhhccC--------------------------------------------------------cchHHH
Confidence 999999999997542000 001235
Q ss_pred eEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 382 ~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
.+...|.+.|..|.|++.. .|++|+.||.|.|||+..-+.-..+ ...+.|.+++|+......|++++.+|++.||
T Consensus 110 a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW 189 (1049)
T KOG0307|consen 110 ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW 189 (1049)
T ss_pred hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence 5677899999999999976 8999999999999999875443333 2567899999998778899999999999999
Q ss_pred EcCCCeEE-EeccCC--cceEEEEEccCC-CeEEEEeCCCc---EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 457 EVRRCQVV-DYTDIR--EIVSAVCYCPDG-KGGIVGTMTGN---CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 457 dl~~~~~~-~~~~~~--~~V~~v~~spdg-~~la~gs~dg~---I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
|++..+.+ .+..+. ..+..+.|+|+. ..|++++.|.. |.+||++...... .....|...|.++.|+
T Consensus 190 Dlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~-------k~~~~H~~GilslsWc 262 (1049)
T KOG0307|consen 190 DLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL-------KILEGHQRGILSLSWC 262 (1049)
T ss_pred cccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch-------hhhcccccceeeeccC
Confidence 99987655 444443 357899999975 56777776654 9999998654321 1134578899999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCC
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|..++++++.|+.|.+|+.++....... ......+..+.|.|... .+++++-||.|-||.+.+..
T Consensus 263 ~~D~~lllSsgkD~~ii~wN~~tgEvl~~~--p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 263 PQDPRLLLSSGKDNRIICWNPNTGEVLGEL--PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCchhhhcccCCCCeeEecCCCceEeeec--CCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999999999999999885554444 44667899999999776 78889999999999998765
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2e-18 Score=181.68 Aligned_cols=261 Identities=18% Similarity=0.251 Sum_probs=192.7
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
-++..|.+.|..++|.|-...|++|+.||+|++|+++.....
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------------------------- 329 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------------------------- 329 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc--------------------------------------
Confidence 367889999999999999999999999999999998431100
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC----------eEEEE-E
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID----------RCLRV-F 425 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~----------~~~~~-~ 425 (755)
....-+|+.+|++|.++|.|+++.+++ ++++|+.||+|+.|++... ..... .
T Consensus 330 ----------------~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~ 393 (577)
T KOG0642|consen 330 ----------------AEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL 393 (577)
T ss_pred ----------------cccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence 001135788999999999999999999 9999999999999965421 11122 2
Q ss_pred ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCC--cceEEEEEccCCCeEEEEeCCCcEEEEECCCCe
Q 004410 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 426 ~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~--~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~ 503 (755)
+|.+.|..+++++ ....|++++.||+||+|+........+.... +..+.+.+-. ..++....+.....+++.+..
T Consensus 394 Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~s--s~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 394 GHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTS--SRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred ccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeecc--chhHhhhhhcccccccchhhh
Confidence 5999999999999 7888999999999999999877664333322 2334444433 232333334455555555444
Q ss_pred EeeeeeEEecccc--cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEE
Q 004410 504 LYQQNQICLQGKK--KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 504 ~~~~~~~~~~~~~--~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
..+...+.-.... ......+..+.++| ...+.+++..|..|+++|..+....+.. ..|...++++++.|+|-+|+
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~--~a~~~svtslai~~ng~~l~ 547 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSM--VAHKDSVTSLAIDPNGPYLM 547 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchhe--eeccceecceeecCCCceEE
Confidence 4433332111111 11234678889999 7799999999999999998776555544 67889999999999999999
Q ss_pred EEeCCCcEEEEEcCCCC
Q 004410 582 SPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~ 598 (755)
+++.|+.|++|++....
T Consensus 548 s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 548 SGSHDGSVRLWKLDVKT 564 (577)
T ss_pred eecCCceeehhhccchh
Confidence 99999999999986543
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.7e-17 Score=164.29 Aligned_cols=301 Identities=13% Similarity=0.109 Sum_probs=218.4
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceee-ecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
.+.+|..-++++.|+.++++||+|+.|..++||++...-.. ....+++.. ..|...|.|++|....++|.+|+.+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR-KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh-cCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 35567778888999999999999999999999997632111 111122222 3466899999999999999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.+.|+++.+.+..+. -....
T Consensus 130 I~HDiEt~qsi~V~~------------------------------------------------------------~~~~~ 149 (609)
T KOG4227|consen 130 IKHDIETKQSIYVAN------------------------------------------------------------ENNNR 149 (609)
T ss_pred Eeeecccceeeeeec------------------------------------------------------------ccCcc
Confidence 999998876442221 11234
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe-E---EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-C---LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~-~---~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
+.|+.+..+|.. .|++.+.++.|.+||.+..+ . +..-........+.|+|....+|++.+..+-+-+||++..+.
T Consensus 150 ~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 150 GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred cceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc
Confidence 588999999976 99999999999999997654 2 222235667889999999999999999999999999987543
Q ss_pred E--E---eccCC---cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 464 V--D---YTDIR---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 464 ~--~---~~~~~---~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
. + ..... ..-..+.|+|+|+.|++--....-.+||+....+... +......-......|.+++|.- ...
T Consensus 230 ~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~-k~D~N~~GY~N~~T~KS~~F~~--D~~ 306 (609)
T KOG4227|consen 230 PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL-KSDHNPNGYCNIKTIKSMTFID--DYT 306 (609)
T ss_pred hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE-eccCCCCcceeeeeeeeeeeec--cee
Confidence 2 1 11222 2236789999999998866666667888887554321 1110000112345677888874 456
Q ss_pred EEEEECCCcEEEEECCcc---------------------eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 536 VIVTSADSLVRVLCGENV---------------------VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~---------------------~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+++|+.+=.|++|.+... .......+.+|...+..+.|+|...+|++.+-...++||.-
T Consensus 307 v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 307 VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 999999999999985421 11112234678888999999999999999999999999964
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=2.3e-17 Score=166.49 Aligned_cols=227 Identities=18% Similarity=0.283 Sum_probs=175.3
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeE-------EEEE-ecCCcEE
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-------LRVF-SHNNYVT 432 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~-------~~~~-~h~~~V~ 432 (755)
.+...+.+.....-..+....+.||.++|++++|+|-+ .|++||.|.+|.||++..+.. +..+ +|...|-
T Consensus 56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg 135 (472)
T KOG0303|consen 56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVG 135 (472)
T ss_pred CcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEE
Confidence 34444444433332334455678999999999999965 999999999999999875533 2333 5999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
-++|+|.-.+.|++++.|.+|.||++.+++.+-...|...|.+++|+.||.+|++.+.|..|+|||.++++++.+..
T Consensus 136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~--- 212 (472)
T KOG0303|consen 136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV--- 212 (472)
T ss_pred EEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc---
Confidence 99999988999999999999999999999877556699999999999999999999999999999999999876531
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEEE----CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEE-EEeCCC
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVTS----ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV-SPSEDS 587 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~s----~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~-sgs~Dg 587 (755)
...+.+-..+.|.. ++. +++++ .+.++-+||..+...............|.---|.+|...|. +|-.|+
T Consensus 213 ----~heG~k~~Raifl~-~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~ 286 (472)
T KOG0303|consen 213 ----AHEGAKPARAIFLA-SGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDS 286 (472)
T ss_pred ----cccCCCcceeEEec-cCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCc
Confidence 11223444556665 566 55443 46789999988766555444455666777777888888775 455799
Q ss_pred cEEEEEcCCCC
Q 004410 588 NIYIWNYSNQD 598 (755)
Q Consensus 588 ~I~iWd~~~~~ 598 (755)
.|+.|.+.+..
T Consensus 287 ~IRYyEit~d~ 297 (472)
T KOG0303|consen 287 SIRYFEITNEP 297 (472)
T ss_pred ceEEEEecCCC
Confidence 99999998765
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=1.5e-16 Score=156.86 Aligned_cols=281 Identities=12% Similarity=0.151 Sum_probs=201.1
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccc-----cccccceeee-cccccEEEEEEe-------cCCCEEEEEcCCC
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSREL-----SSLYTGQEFL-AHEGSILTMKFS-------LDGQYLASGGEDG 306 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~-----~~~~~~~~l~-~H~~~V~~l~fs-------pdg~~LaSgs~Dg 306 (755)
...|+|||.-+++-+.|..+.+|++......- .......+++ .....|...+|- |+..++|+.+.|.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 37899999999999999999999875321100 0111111111 123567777774 5778999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
-|++||.-+|+....+.. ..
T Consensus 134 PIh~wdaftG~lraSy~~------------------------------------------------------------yd 153 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRA------------------------------------------------------------YD 153 (406)
T ss_pred ceeeeeccccccccchhh------------------------------------------------------------hh
Confidence 999999998875433321 11
Q ss_pred CCC---CEEEEEEcCCCeEEEEeCCCcEEEEeC-CCCeEEEE---E-----ecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 387 HSS---EVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRV---F-----SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 387 h~~---~V~~l~~s~~~~L~s~s~Dg~V~iWdl-~s~~~~~~---~-----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
|.. ...+|+|+|||.-+.++..+.|+++|+ +.|.-... + ...+-|.|++|+|.+...++.|+....+-
T Consensus 154 h~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~g 233 (406)
T KOG2919|consen 154 HQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVG 233 (406)
T ss_pred hHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceee
Confidence 222 245799999994455667799999998 44433222 2 24778999999998888999999999999
Q ss_pred EEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeC-CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 455 iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
||.-..+..+ .+.+|.+.|+.++|.++|+.|.+|.. +..|..||++.-.... ..+..+.... ..-.-+...| .
T Consensus 234 iy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv---~~L~rhv~~T-NQRI~FDld~-~ 308 (406)
T KOG2919|consen 234 IYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV---YALERHVGDT-NQRILFDLDP-K 308 (406)
T ss_pred eEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh---hhhhhhccCc-cceEEEecCC-C
Confidence 9988877766 56789999999999999999999886 6689999998644321 1122222111 2223355667 8
Q ss_pred CCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
+.+|++|+.||.|++||..+....... ...+...++.++++|--.++++++..
T Consensus 309 ~~~LasG~tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 309 GEILASGDTDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CceeeccCCCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence 899999999999999999885442221 14577889999999998888877643
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.2e-16 Score=178.38 Aligned_cols=302 Identities=18% Similarity=0.317 Sum_probs=211.3
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~I~vWdv~~ 315 (755)
...+.|+|-...++++....+|+|||..++.. +..+... ..-...|+.|.+-. |..+|++|+.||.||||+--.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-l~~F~n~---~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRL-LNGFDNG---AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCce-eccccCC---CCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 34488999999999999888999999887653 3322211 12345788998855 557899999999999997422
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
... ..+ .++.. |.. + . ..+.+..+.-.-+.
T Consensus 1143 ~~~--------~~~-----------eLVTa-----------------------w~~----L-s---~~~~~~r~~~~v~d 1172 (1387)
T KOG1517|consen 1143 DKW--------KKP-----------ELVTA-----------------------WSS----L-S---DQLPGARGTGLVVD 1172 (1387)
T ss_pred ccc--------CCc-----------eeEEe-----------------------ecc----c-c---ccCccCCCCCeeee
Confidence 110 000 00000 000 0 0 00011111114467
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----EEEecc
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTD 468 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~~~~~ 468 (755)
|.... +|++++.-+.|+|||+...++...+. ...-|+++.-+-..++.+++|..||.|++||.+... +..+..
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 87755 88888888999999999998888774 566788887766578999999999999999998643 235667
Q ss_pred CCcc--eEEEEEccCCCe-EEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 469 IREI--VSAVCYCPDGKG-GIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 469 ~~~~--V~~v~~spdg~~-la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
|... |..+.+.+.|-. |++|+.+|.|++||++.........+... ..-+..++++..++ ....+++|+. +.|
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~---~~yGs~lTal~VH~-hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH---WEYGSALTALTVHE-HAPIIASGSA-QLI 1327 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec---cccCccceeeeecc-CCCeeeecCc-ceE
Confidence 7776 999999997765 99999999999999998633322222110 01134699999999 8899999998 999
Q ss_pred EEEECCcceee-E---EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 546 RVLCGENVVGK-F---KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 546 ~iwd~~~~~~~-~---~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+||+....... + ........+.+.+++|+|.--+||+|+.|..|.||...+++
T Consensus 1328 kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1328 KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99997642211 1 11112345678999999999999999999999999987654
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=8.5e-18 Score=177.06 Aligned_cols=279 Identities=20% Similarity=0.244 Sum_probs=203.4
Q ss_pred hhhhhcccccccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcc-cccccccceeeecccccEEEEEEec
Q 004410 216 AKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-ELSSLYTGQEFLAHEGSILTMKFSL 294 (755)
Q Consensus 216 ~~k~~~~~w~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~-~~~~~~~~~~l~~H~~~V~~l~fsp 294 (755)
.++...+.|...+ ++..|.+.+..++|+|-...|++++.||++++|.+.+... ....+.+.-+|.+|.++|.|++..+
T Consensus 276 ~k~a~~k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~ 354 (577)
T KOG0642|consen 276 LKKAFTKKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS 354 (577)
T ss_pred hhhhhheecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC
Confidence 4455567788888 8888899999999999999999999999999999843211 1123344567999999999999999
Q ss_pred CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 295 dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
++.++.+|+.||+|+.|++....- .+... +
T Consensus 355 n~~~~ysgg~Dg~I~~w~~p~n~d--p~ds~--------------------------------------------d---- 384 (577)
T KOG0642|consen 355 NGEHCYSGGIDGTIRCWNLPPNQD--PDDSY--------------------------------------------D---- 384 (577)
T ss_pred CceEEEeeccCceeeeeccCCCCC--ccccc--------------------------------------------C----
Confidence 999999999999999998752210 00000 0
Q ss_pred eccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 375 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
.......+.||.+.|+.+++|... .|++++.||+|++|+...... .+|. ..+.-+.+.+-.......++...-
T Consensus 385 --p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~ 461 (577)
T KOG0642|consen 385 --PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRF 461 (577)
T ss_pred --cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhccc
Confidence 011245678999999999999988 999999999999999877666 4443 445566677654121222322222
Q ss_pred CcEEEEEcCCCeEEEecc--------CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCC
Q 004410 451 GKVRIWEVRRCQVVDYTD--------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~--------~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
+.--++++...+.+.+.. ....+.-+.++|.+...+++..|+.|+++|..++.++.. ...|...
T Consensus 462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s--------~~a~~~s 533 (577)
T KOG0642|consen 462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS--------MVAHKDS 533 (577)
T ss_pred ccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh--------eeeccce
Confidence 222333333332222111 124477889999999999999999999999999988754 3346678
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeE
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF 557 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~ 557 (755)
++++++.| ++.+|++++.|+.+++|.........
T Consensus 534 vtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 534 VTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ecceeecC-CCceEEeecCCceeehhhccchheee
Confidence 99999999 99999999999999999876544433
No 169
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=6.9e-17 Score=171.03 Aligned_cols=203 Identities=18% Similarity=0.321 Sum_probs=151.3
Q ss_pred CEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCe-------EEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-------CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 390 ~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~-------~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
.|+++.|.|-. .|+.++.||.|+||.+..+. ....+ .|...|+.+.|+|.-.+.|+++++|-+|++||++
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 47899999955 99999999999999987543 23333 3999999999999888999999999999999999
Q ss_pred CCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 460 RCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 460 ~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
+.... .+.+|.+.|..++|+|||+.+|+.+.||+|++|..+.+.... .......+.+--.+.|.- +++++++
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv------~Eg~gpvgtRgARi~wac-dgr~viv 781 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV------YEGKGPVGTRGARILWAC-DGRIVIV 781 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc------ccCCCCccCcceeEEEEe-cCcEEEE
Confidence 88766 789999999999999999999999999999999998765431 111112223444566766 8888888
Q ss_pred EECC----CcEEEEECCcceee-EEEeeeccCCceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCCc
Q 004410 539 TSAD----SLVRVLCGENVVGK-FKASAFRVAGSQMFATFTSDGK-HVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 539 ~s~D----g~I~iwd~~~~~~~-~~~~~~~~~~~v~~l~fspdg~-~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.+.| ..|.+||....... +........-.+.--.+.+|.. ++++|-.|..|++|.+-...+
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 7766 46888987764421 1111122222223334555654 567888999999999876653
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=7e-15 Score=160.99 Aligned_cols=290 Identities=25% Similarity=0.436 Sum_probs=221.3
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc-ccEEEEEE-ecCCC-EEEEEcC-C
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKF-SLDGQ-YLASGGE-D 305 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~f-spdg~-~LaSgs~-D 305 (755)
....+...+.++.+.+.+..++.++.++.+.+|+.......+ ..+.++. ..+..+.+ ++++. +++..+. |
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI------KSLEGLHDSSVSKLALSSPDGNSILLASSSLD 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE------EEEeccCCCceeeEEEECCCcceEEeccCCCC
Confidence 344556677779999999999999999999999987654112 2344433 36777777 88887 5555455 9
Q ss_pred CcEEEEEccC-CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 306 GTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 306 g~I~vWdv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
+.+.+|++.. .. ....+
T Consensus 134 ~~~~~~~~~~~~~--------------------------------------------------------------~~~~~ 151 (466)
T COG2319 134 GTVKLWDLSTPGK--------------------------------------------------------------LIRTL 151 (466)
T ss_pred ccEEEEEecCCCe--------------------------------------------------------------EEEEE
Confidence 9999999865 21 13456
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeC-CCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCC-EEEEEeCCCcEEEEEcCC
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~-~l~sgs~Dg~V~iwdl~~ 460 (755)
..|...|..++|++++ .+++++. |+.+++|++..+..+..+. |...|.+++|+| ++. ++++++.|+.|++||...
T Consensus 152 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~ 230 (466)
T COG2319 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLST 230 (466)
T ss_pred ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCC
Confidence 7799999999999999 7787775 9999999999888877775 899999999998 776 555569999999999987
Q ss_pred CeEEE--eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE-eeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 461 CQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 461 ~~~~~--~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~-~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
+.... +..|.... ...|+|++..+++++.++.+++|++..... ... + ..|...+.++.|.| ++..++
T Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----~----~~~~~~v~~~~~~~-~~~~~~ 300 (466)
T COG2319 231 GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT----L----SGHSSSVLSVAFSP-DGKLLA 300 (466)
T ss_pred CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE----E----ecCCccEEEEEECC-CCCEEE
Confidence 77665 55666654 338999998999999999999999987665 211 1 33478899999999 777777
Q ss_pred EEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE-eCCCcEEEEEcCCCC
Q 004410 538 VTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP-SEDSNIYIWNYSNQD 598 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg-s~Dg~I~iWd~~~~~ 598 (755)
+++.|+.+.+|+..............|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 301 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 301 SGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 7999999999987765444333223566678899994333566665 688999999998765
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=3.9e-16 Score=154.03 Aligned_cols=249 Identities=20% Similarity=0.322 Sum_probs=176.9
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceE
Q 004410 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (755)
Q Consensus 287 V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 366 (755)
...+.|+|||..|++-++|..+++|++-..--.... ..+ ..+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~----~~~--~~~-------------------------------- 93 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA----DGP--LNF-------------------------------- 93 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCC----CCc--ccc--------------------------------
Confidence 345799999999999999999999998432100000 000 000
Q ss_pred EEeCCcceeccCccceEecCCCCCEEEEEEc-------CCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCC---cEE
Q 004410 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS-------KNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNN---YVT 432 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s-------~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~---~V~ 432 (755)
...+... ......|.+.+|- |+. ++++.+.+.-|++||.-+|+....+. |.+ ...
T Consensus 94 ----------~~~~~~r-~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh 162 (406)
T KOG2919|consen 94 ----------SKHLSYR-YQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH 162 (406)
T ss_pred ----------ccceeEE-eccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe
Confidence 0000000 1123456666664 344 88899999999999999999887774 443 346
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEc-CCCe---EEE-----eccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCC
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEV-RRCQ---VVD-----YTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDN 502 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl-~~~~---~~~-----~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~ 502 (755)
+++|+| |+.+|++|. ...|+++|+ +.+. +.. ..+..+.|.+++|+| +.+.+++|+...++-||.-...
T Consensus 163 sL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 163 SLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred eEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 899999 999998774 688999999 4432 221 233467799999999 5669999999999999988887
Q ss_pred eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEECCcceeeEEEeeeccCC---ceEEEEEecCCC
Q 004410 503 QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-DSLVRVLCGENVVGKFKASAFRVAG---SQMFATFTSDGK 578 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~---~v~~l~fspdg~ 578 (755)
.++.. ...|.+.|+.++|++ +++.+++|.. |..|..||++......... .+|.+ .-.-....|+|+
T Consensus 241 ~pl~l--------lggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L-~rhv~~TNQRI~FDld~~~~ 310 (406)
T KOG2919|consen 241 RPLQL--------LGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYAL-ERHVGDTNQRILFDLDPKGE 310 (406)
T ss_pred Cceee--------ecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhh-hhhccCccceEEEecCCCCc
Confidence 76642 225788999999999 7788888765 7899999998754433221 23332 222345578999
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 004410 579 HVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 579 ~L~sgs~Dg~I~iWd~~~ 596 (755)
+|++|+.||.|++||+++
T Consensus 311 ~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred eeeccCCCccEEEEecCC
Confidence 999999999999999988
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=5.9e-15 Score=158.95 Aligned_cols=278 Identities=13% Similarity=0.154 Sum_probs=176.8
Q ss_pred EEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc-CCCcEEEEEccCCeeeeeeecCCCCC
Q 004410 251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHERLDGFDVQDTDP 329 (755)
Q Consensus 251 asgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs-~Dg~I~vWdv~~~~~~~~~~~~~~~~ 329 (755)
++...++.|.+|++.... .+ ...+.+. +.+....|+++|++++|++++ .++.|.+|++.....+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g-~l---~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~------- 73 (330)
T PRK11028 6 IASPESQQIHVWNLNHEG-AL---TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA------- 73 (330)
T ss_pred EEcCCCCCEEEEEECCCC-ce---eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe-------
Confidence 344668999999985321 11 1223332 345677899999999987664 5788999998622111000
Q ss_pred ceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe-C
Q 004410 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-A 407 (755)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s-~ 407 (755)
... ...+....++++|++ .|++++ .
T Consensus 74 ----------------------------------------------------~~~-~~~~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 74 ----------------------------------------------------AES-PLPGSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred ----------------------------------------------------eee-cCCCCceEEEECCCCCEEEEEEcC
Confidence 000 011235679999999 566555 5
Q ss_pred CCcEEEEeCCCC----eEEEEEecCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEEcCCCeEEE-------eccCCcceEE
Q 004410 408 DKTVRLWQVGID----RCLRVFSHNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRRCQVVD-------YTDIREIVSA 475 (755)
Q Consensus 408 Dg~V~iWdl~s~----~~~~~~~h~~~V~~i~fsp~d~~~l~s-gs~Dg~V~iwdl~~~~~~~-------~~~~~~~V~~ 475 (755)
++.|.+|++.+. +.+..+.+.....+++++| +++++++ ...++.|.+||+.+...+. ..........
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~ 179 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRH 179 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCce
Confidence 899999999743 2333333445578889999 8877755 5566999999997632221 1122345678
Q ss_pred EEEccCCCeEEEEeC-CCcEEEEECCC--CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEECC
Q 004410 476 VCYCPDGKGGIVGTM-TGNCRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADSLVRVLCGE 551 (755)
Q Consensus 476 v~~spdg~~la~gs~-dg~I~iwD~~~--~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~~ 551 (755)
+.|+|+|++++++.. ++.|.+||+.. +.+.....+...............+.++| ++++++++. .++.|.+|+..
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEe
Confidence 999999999988876 89999999973 33321111111101111122334688999 888888875 47899999975
Q ss_pred ccee--eEEEeeeccCCceEEEEEecCCCEEEEEeC-CCcEEEEEcCC
Q 004410 552 NVVG--KFKASAFRVAGSQMFATFTSDGKHVVSPSE-DSNIYIWNYSN 596 (755)
Q Consensus 552 ~~~~--~~~~~~~~~~~~v~~l~fspdg~~L~sgs~-Dg~I~iWd~~~ 596 (755)
.... .+...... ......+.|+|||++|+++.. +++|.+|+++.
T Consensus 259 ~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 259 EDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 4322 22221111 124457899999999998875 89999999864
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=4.8e-16 Score=172.24 Aligned_cols=270 Identities=19% Similarity=0.184 Sum_probs=197.1
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEe
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~ 335 (755)
+.+.||+++...... ....-...|.|++|+| +..+||.|..+|.|.+||+..+.... ...
T Consensus 222 ~~~~vW~~~~p~~Pe-------~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------~s~---- 282 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE-------LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------PSG---- 282 (555)
T ss_pred ceEEEEecCCCCCce-------EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--------Ccc----
Confidence 479999987542211 1223457899999999 67889999999999999997765310 000
Q ss_pred eCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEE
Q 004410 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVR 412 (755)
Q Consensus 336 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~ 412 (755)
.-.....|..+++.+.|..+. .+++++.||.|.
T Consensus 283 --------------------------------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 283 --------------------------------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred --------------------------------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 011224689999999998765 599999999999
Q ss_pred EEeCCCCeE------EEE-------EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc---CCCe------EEEeccCC
Q 004410 413 LWQVGIDRC------LRV-------FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV---RRCQ------VVDYTDIR 470 (755)
Q Consensus 413 iWdl~s~~~------~~~-------~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl---~~~~------~~~~~~~~ 470 (755)
.|+++.-.. ... ......++++.|.+.+.+.|+.|+.+|.|.--+. +... ......|.
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 998763322 111 1134568999999999999999999999887333 2222 22456788
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECC-CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~-~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
+.|+++.++|=+..++..+.|.+++||... ....+.. ...+...+++++|+|..+..++++..||.|.|||
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~--------~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS--------LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCCCcchh--------hhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 899999999977666655559999999887 4333321 2234456999999999899999999999999999
Q ss_pred CCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+..................+.+.|+++|+.|++|...|.|++|++...
T Consensus 471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 875433333222333556677888999999999999999999999654
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=1e-17 Score=182.57 Aligned_cols=285 Identities=18% Similarity=0.286 Sum_probs=219.8
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
+.++.+.+|.+.|.|++|...|.++++|+.|..|+||...+.. +...+.||.+.|+.++.+.+..++|+++.|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------~lAs~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------CLASCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------hhccCCCCccccchhccchhhhhhhhcccC
Confidence 3455677889999999999999999999999999999965433 334578999999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
..|+||.+.++. |+..+.
T Consensus 254 ~vIrvWrl~~~~--------------------------------------------------------------pvsvLr 271 (1113)
T KOG0644|consen 254 KVIRVWRLPDGA--------------------------------------------------------------PVSVLR 271 (1113)
T ss_pred ceEEEEecCCCc--------------------------------------------------------------hHHHHh
Confidence 999999987764 355678
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEE-----EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV-----FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~-----~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
||++.|++++|+|-. +.+.||++++||.+-.-.+.. +.....+.++.|.. .+.-+++|+.|+.-+.|.+..
T Consensus 272 ghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~ 347 (1113)
T KOG0644|consen 272 GHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQ 347 (1113)
T ss_pred ccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhH
Confidence 999999999999853 788999999999872111111 12456678888887 889999999999999988764
Q ss_pred CeEEEeccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 461 CQVVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.... ...+.-+.++.+- .+.+++-.+-.+.+|++.++.+... ...|...+..+.++|-+....+.+
T Consensus 348 l~~~-----~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~--------l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 348 LAWR-----SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN--------LMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred hhhh-----ccceEEEeccccccccceeeeeeeEeeeeecccchhhhh--------hcccccceeeeeecCCCcHhhhhc
Confidence 3211 0111111111121 3455566677789999999876542 334667899999999999999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.||.+.|||+-......... .+ .+.+....||+||..++....-|.++|.....++
T Consensus 415 g~dgst~iwdi~eg~pik~y~-~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKHYF-IG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cCCCceEeeecccCCcceeee-cc-cceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 999999999987765544442 33 4567778999999999999888999999876665
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.73 E-value=3.1e-17 Score=162.16 Aligned_cols=230 Identities=23% Similarity=0.392 Sum_probs=177.1
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeeeeecC
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
..+||+|+.-|.|+|.|+.+.. ....+.+|.++|..|+|.|+. ++|++|+.|..||+|++++..++..+.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~-------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-- 175 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQ-------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG-- 175 (385)
T ss_pred CeeEEeecceeEEEEEecchhh-------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec--
Confidence 4589999999999999976543 335688999999999999964 799999999999999999887654332
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEE
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s 404 (755)
-+.||.+.|+++.|+.++ +|++
T Consensus 176 ---------------------------------------------------------G~egHrdeVLSvD~~~~gd~i~S 198 (385)
T KOG1034|consen 176 ---------------------------------------------------------GVEGHRDEVLSVDFSLDGDRIAS 198 (385)
T ss_pred ---------------------------------------------------------ccccccCcEEEEEEcCCCCeeec
Confidence 246899999999999999 9999
Q ss_pred EeCCCcEEEEeCCCCeE-------------------------EEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004410 405 SSADKTVRLWQVGIDRC-------------------------LRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (755)
Q Consensus 405 ~s~Dg~V~iWdl~s~~~-------------------------~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~i 455 (755)
+++|.+|++|++...+. ...| .|..+|-|+.|- ++++++-+-++.|..
T Consensus 199 cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~ 275 (385)
T KOG1034|consen 199 CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVC 275 (385)
T ss_pred cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEE
Confidence 99999999999873211 1111 178888888884 589999999999999
Q ss_pred EEcCC-CeE-------------E-EeccCCcceE--EEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 456 WEVRR-CQV-------------V-DYTDIREIVS--AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 456 wdl~~-~~~-------------~-~~~~~~~~V~--~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
|.... .+. . .+......|. ..+|.|-++.||.|...|.|.+||++.........+ ....
T Consensus 276 w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl----~~s~ 351 (385)
T KOG1034|consen 276 WKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL----THSK 351 (385)
T ss_pred EecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE----Eecc
Confidence 98721 111 1 1222222333 446677789999999999999999998776422211 1223
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
....|...+|+. ++..|+....|++|.-||.
T Consensus 352 ~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 352 SGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 457899999999 9999999999999999984
No 176
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.5e-16 Score=159.84 Aligned_cols=260 Identities=22% Similarity=0.240 Sum_probs=191.7
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+.+.+|.+.|.+|.|+.++++||+|+.|..++||.+...-..+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k----------------------------------- 92 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK----------------------------------- 92 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-----------------------------------
Confidence 345678999999999999999999999999999999985431100
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEec-CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCC---c
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNN---Y 430 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~---~ 430 (755)
..+|+.... .|.+.|.+|+|...+ .|.+|..+++|.+-|+++.+.+.++.|.. .
T Consensus 93 ---------------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~ 151 (609)
T KOG4227|consen 93 ---------------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGD 151 (609)
T ss_pred ---------------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccc
Confidence 013333322 356899999999888 99999999999999999999999998766 9
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----EEEeccCCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEe
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~~~~~~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
|+.+..+| .++.|++.+.++.|.+||++..+ ++...........+-|+|- ..+|++.+..+-+-+||.+.....
T Consensus 152 VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 152 VYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred eeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence 99999999 68999999999999999998765 3445556677889999994 567788899999999999865432
Q ss_pred eeeeEEecccccC--CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee-eEEEe----eeccCCceEEEEEecCCC
Q 004410 506 QQNQICLQGKKKL--PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG-KFKAS----AFRVAGSQMFATFTSDGK 578 (755)
Q Consensus 506 ~~~~~~~~~~~~~--~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~----~~~~~~~v~~l~fspdg~ 578 (755)
..- ..+.+.. ....-.++.|+| ++..+++--....-.+||.....+ .++.. ..-+...+.+++|.-|.
T Consensus 231 ~~~---~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~- 305 (609)
T KOG4227|consen 231 VYQ---RSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY- 305 (609)
T ss_pred HHh---hhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-
Confidence 100 0111111 122346788999 777777665555566677665322 22210 01123457788887654
Q ss_pred EEEEEeCCCcEEEEEcCCC
Q 004410 579 HVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 579 ~L~sgs~Dg~I~iWd~~~~ 597 (755)
.+++|+.+=.|++|.+...
T Consensus 306 ~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 306 TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred eeeccCcccceEEEecCCC
Confidence 4999999999999999653
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=2.7e-16 Score=152.89 Aligned_cols=261 Identities=18% Similarity=0.219 Sum_probs=186.9
Q ss_pred eeeccCcceeecCCCC-eeEEeeCC-------CeEEEEECCCCccc--ccccccceeee-cccccEEEEEEecCCCEEEE
Q 004410 233 RIIDRHGSATLKPGDH-ELTLGQRM-------RRVRVHPVKKQSRE--LSSLYTGQEFL-AHEGSILTMKFSLDGQYLAS 301 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~-~lasgs~d-------g~V~Vw~~~~~~~~--~~~~~~~~~l~-~H~~~V~~l~fspdg~~LaS 301 (755)
.+.+.|..++-+|..+ +|++...+ ..+.||.+...... ..++.+...+. .|-+.|.|+.|.|++..||+
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 3456677777888766 44544321 35789987654322 22233333343 56679999999999999998
Q ss_pred EcCCCcEEEEEccCCeee-eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 302 GGEDGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 302 gs~Dg~I~vWdv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
-. |..|.+|++.++..+ ..+..
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~s-------------------------------------------------------- 163 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLS-------------------------------------------------------- 163 (370)
T ss_pred ec-cCceEEEEcccCcchheeecc--------------------------------------------------------
Confidence 76 789999999877541 11110
Q ss_pred ceEecCCCCCEEEEEEcC--CCeEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 381 LHEFQGHSSEVLDLSWSK--NGFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~--~~~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
..-.+|....++-+|+| ++..+....|+++..||+++.++...+. |...|..+.|+|....+|++|+.||.|+||
T Consensus 164 -s~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriW 242 (370)
T KOG1007|consen 164 -SESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIW 242 (370)
T ss_pred -cccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEE
Confidence 00112455667788998 4455666778999999999998887774 999999999999777789999999999999
Q ss_pred EcCCCe--EEEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeee-----------------EEec---
Q 004410 457 EVRRCQ--VVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQ-----------------ICLQ--- 513 (755)
Q Consensus 457 dl~~~~--~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~-----------------~~~~--- 513 (755)
|.+..+ +..+.+|...|.++.|+| ..++|++|+.|..|.+|....-...+... ..++
T Consensus 243 D~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~ 322 (370)
T KOG1007|consen 243 DTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQ 322 (370)
T ss_pred eccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccc
Confidence 998654 336888999999999999 45788899999999999764321100000 0111
Q ss_pred -ccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 514 -GKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 514 -~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
.....|...|++++|+..++-.+++-+.||.+.|=...
T Consensus 323 l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 323 LETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12345778899999999888899999999999876543
No 178
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=3.5e-16 Score=150.48 Aligned_cols=292 Identities=15% Similarity=0.151 Sum_probs=195.8
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeee-cccccEEEEEEecCCCEEEEEcCCCc
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
-.+..|...++++.|..+++ |.+|..-|.|++|.+.+.... -.+. .|...|+.+.--|+ ..|.+-+.|+.
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~-------~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL-------PLIRLFGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccc-------hhhhhhccceeeceeecCC-cchhhcCCCce
Confidence 34556778888888988887 788999999999998764432 1244 57789999999987 56889999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCC--CceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHL--SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.+|++..+..+..-....+......|..... ..........................+.+.+. .-.
T Consensus 79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd-----------~~~ 147 (323)
T KOG0322|consen 79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD-----------SER 147 (323)
T ss_pred EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc-----------hhc
Confidence 99999987654433222222221111111111 10000001111100000000000011111111 112
Q ss_pred CCCCCEEEEEEcCC-C---eEEEEeCCCcEEEEeCCCCeEEEEE-----------ecCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 386 GHSSEVLDLSWSKN-G---FLLSSSADKTVRLWQVGIDRCLRVF-----------SHNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 386 gh~~~V~~l~~s~~-~---~L~s~s~Dg~V~iWdl~s~~~~~~~-----------~h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
+..+.+++..|-.. + .|++|..+|.|.+||+.++..+..+ .|..+|.++.|.+ ..+.=++|+.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcc
Confidence 34566777775443 2 6778889999999999997444333 2899999999998 66667788889
Q ss_pred CcEEEEEcCCC--eEE---EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEE
Q 004410 451 GKVRIWEVRRC--QVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525 (755)
Q Consensus 451 g~V~iwdl~~~--~~~---~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~ 525 (755)
.++..|++... .+. .....+-.|..+.+.||++.+|+++.|+.|+||..++...+.. .+.|...|++
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV--------LkyHsagvn~ 298 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV--------LKYHSAGVNA 298 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh--------hhhhhcceeE
Confidence 99999998743 221 2233345688899999999999999999999999999887643 3457789999
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
++|+| +...++.++.|++|.+|++
T Consensus 299 vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCC-CCchhhhccCCceEEeeec
Confidence 99999 8899999999999999985
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=8.1e-14 Score=152.56 Aligned_cols=318 Identities=28% Similarity=0.416 Sum_probs=232.8
Q ss_pred cceee-cCCCC-eeEEeeC-CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CCcEEEEEcc
Q 004410 239 GSATL-KPGDH-ELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVI 314 (755)
Q Consensus 239 ~~~~~-spdg~-~lasgs~-dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWdv~ 314 (755)
..+.+ ++++. .++..+. ++.+.+|+... .......+..|...|.+++|+|++.++++++. |+.+++|++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
T COG2319 113 SKLALSSPDGNSILLASSSLDGTVKLWDLST------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186 (466)
T ss_pred eeEEEECCCcceEEeccCCCCccEEEEEecC------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC
Confidence 33444 77887 4454444 99999999765 12233457889999999999999999999986 9999999999
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce-EecCCCCCEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLD 393 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gh~~~V~~ 393 (755)
.+..+..+..+...+.++.+.+... ........++.+.+|+.. ....+. .+.+|...+ .
T Consensus 187 ~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~ 246 (466)
T COG2319 187 TGKPLSTLAGHTDPVSSLAFSPDGG---------------LLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-V 246 (466)
T ss_pred CCceEEeeccCCCceEEEEEcCCcc---------------eEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-e
Confidence 8777777766666666666653322 111113445555555322 223334 578888876 4
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeE-EEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec---
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--- 467 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~-~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~--- 467 (755)
..|++++ .+++++.|+.+++|++..... +..+ .|...|.++.|+| ++..+++++.|+.+.+||+.........
T Consensus 247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 325 (466)
T COG2319 247 SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325 (466)
T ss_pred EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeec
Confidence 4899998 888999999999999986664 4444 6889999999999 8888888999999999999887766432
Q ss_pred cCCcceEEEEEccCCCeEEEE-eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE-EECCCcE
Q 004410 468 DIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV-TSADSLV 545 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s-~s~Dg~I 545 (755)
.+...+..+.|.+++..++.+ ..|+.+.+|++........ .. ....+..+.+.+ + ..++. +..++.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 394 (466)
T COG2319 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT----LE-----GHSNVLSVSFSP-D-GRVVSSGSTDGTV 394 (466)
T ss_pred ccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEE----ec-----CCceEEEEEECC-C-CCEEEEecCCCce
Confidence 566679999994343566666 6788999999988762111 00 111288999999 7 65555 8899999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
.+|+.......... ..+...+....+++++.++++++.++.+++|+..+
T Consensus 395 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 395 RLWDLSTGSLLRNL--DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEecccCeeeeec--cCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 99998876555443 22217889999999999999999999999999987
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.2e-15 Score=140.25 Aligned_cols=286 Identities=18% Similarity=0.236 Sum_probs=193.2
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcc---cccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR---ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~---~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
.+..-+++|.+++|++|..+|.|.|..++.... +-......-..++|+++|..|+|. ..+|++|+ ||.|+-|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 345578999999999999999999998763211 111111223458999999999998 45777776 599999988
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.+.......+ ..|.. ..|.+.-...--.|++
T Consensus 89 ~E~~es~~~K------------------------------------------------~lwe~-~~P~~~~~~evPeINa 119 (325)
T KOG0649|consen 89 NEEEESLATK------------------------------------------------RLWEV-KIPMQVDAVEVPEINA 119 (325)
T ss_pred hhhhhhccch------------------------------------------------hhhhh-cCccccCcccCCccce
Confidence 6654210000 00000 0111111112346888
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccC--
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-- 469 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~-- 469 (755)
|-..|.. -+++++.|+.++-||+++|+..+++. |+++|.++.--. ....+++|+.||++||||.++++.+.....
T Consensus 120 m~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 120 MWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred eEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEecccc
Confidence 8888766 67777799999999999999999995 999999999854 567899999999999999999987753321
Q ss_pred ---------CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 470 ---------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 470 ---------~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
...|.+++. +...+++|+ ...+.+|.++.......+.+ ..++..+.|- ...+++++
T Consensus 199 ~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpi---------pa~v~~v~F~---~d~vl~~G 263 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPI---------PARVHLVDFV---DDCVLIGG 263 (325)
T ss_pred ChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEec---------ccceeEeeee---cceEEEec
Confidence 223556655 445777765 45799999998887766554 2456667774 47888888
Q ss_pred CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecC-CCEEEEEeCCCcEEEEE
Q 004410 541 ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD-GKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspd-g~~L~sgs~Dg~I~iWd 593 (755)
..+.|.-|.+........ .......++..|+.. -++|-.++..+.+.|+.
T Consensus 264 ~g~~v~~~~l~Gvl~a~i---p~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 264 EGNHVQSYTLNGVLQANI---PVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cccceeeeeeccEEEEec---cCCccceeeecccCCceEEEEecccceeeeeee
Confidence 888999887664333222 222334455555433 24555566666666653
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.6e-15 Score=164.35 Aligned_cols=289 Identities=19% Similarity=0.241 Sum_probs=207.8
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
...+.+.++||+++++|+|..||+|.||.--.... .-...+.+.-|...|.+++|++||.+|.|||..|.+.+|.+.
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~---~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD---DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEecccccc---ccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 33467799999999999999999999997544211 113446788999999999999999999999999999999998
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
+++. ++ +..-.++|..+
T Consensus 282 T~~k--qf-------------------------------------------------------------LPRLgs~I~~i 298 (792)
T KOG1963|consen 282 TGKK--QF-------------------------------------------------------------LPRLGSPILHI 298 (792)
T ss_pred CCCc--cc-------------------------------------------------------------ccccCCeeEEE
Confidence 8762 11 11234678999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe------------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~------------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
.++||+ ..+....|..|.+-...+.....++. ..+-.+.+.++| ..+.++-.+..|.|.+||+-+.
T Consensus 299 ~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 299 VVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred EEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEecccc
Confidence 999999 77777889999999876554444432 245568889999 7788888889999999999875
Q ss_pred eEEE------ec------cCCcceEEEEEccCCCeEEEEeC--------CC--cEEEEECCCCeEeeeeeEEecccccCC
Q 004410 462 QVVD------YT------DIREIVSAVCYCPDGKGGIVGTM--------TG--NCRFYDIKDNQLYQQNQICLQGKKKLP 519 (755)
Q Consensus 462 ~~~~------~~------~~~~~V~~v~~spdg~~la~gs~--------dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~ 519 (755)
..+. .. .+.-.+++++.+..|.+++++-. || .+++|-......-..+... ....|
T Consensus 378 ~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~---I~~PH 454 (792)
T KOG1963|consen 378 STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK---INNPH 454 (792)
T ss_pred ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE---EecCC
Confidence 4331 11 12335788888888999888642 33 3778866544332211111 12345
Q ss_pred CCCeEEEEEcCCCCC-EEEEEECCCcEEEEECCc----------ceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 520 GKRITGFQFSPSDPS-KVIVTSADSLVRVLCGEN----------VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 520 ~~~I~~v~fsp~d~~-~l~s~s~Dg~I~iwd~~~----------~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
+..+...++.+.... ..++++.||.++||-..+ ..+.... .-|..++++++|+.||. +++.+.|+.
T Consensus 455 ~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~--sy~k~~i~a~~fs~dGs-lla~s~~~~ 531 (792)
T KOG1963|consen 455 GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG--SYHKTPITALCFSQDGS-LLAVSFDDT 531 (792)
T ss_pred CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee--ccccCcccchhhcCCCc-EEEEecCCE
Confidence 555555555443444 899999999999998732 2233333 23778999999999995 555667789
Q ss_pred EEEEEcCC
Q 004410 589 IYIWNYSN 596 (755)
Q Consensus 589 I~iWd~~~ 596 (755)
|.|||..+
T Consensus 532 Itiwd~~~ 539 (792)
T KOG1963|consen 532 ITIWDYDT 539 (792)
T ss_pred EEEecCCC
Confidence 99999988
No 182
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=1.2e-16 Score=153.61 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=123.7
Q ss_pred cCCcEEEEEEeeCCCC--EEEEEeCCCcEEEEEcCCCeEE-----------EeccCCcceEEEEEccCCCeEEEEeCCCc
Q 004410 427 HNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEVRRCQVV-----------DYTDIREIVSAVCYCPDGKGGIVGTMTGN 493 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~--~l~sgs~Dg~V~iwdl~~~~~~-----------~~~~~~~~V~~v~~spdg~~la~gs~dg~ 493 (755)
..+.++|..+...++. ++++|..+|.|.+||+.++..+ ....|..+|.++.|.+.-..=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 3455666665433333 4677889999999999986222 34567889999999987777788888889
Q ss_pred EEEEECCC--CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEE
Q 004410 494 CRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFA 571 (755)
Q Consensus 494 I~iwD~~~--~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l 571 (755)
+..|.+.. +.+.... ........|..+.+-| |++.+++++.|+.||||..++....... .-|.+.|+++
T Consensus 229 l~~~Sl~~s~gslq~~~------e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVL--kyHsagvn~v 299 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRK------EITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVL--KYHSAGVNAV 299 (323)
T ss_pred ceeeeeccccCcccccc------eEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhh--hhhhcceeEE
Confidence 99998864 3333222 2223345788889999 9999999999999999998887665554 5688999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEc
Q 004410 572 TFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 572 ~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+|+|+...+|+++.|++|.+|++
T Consensus 300 Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999986
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.4e-14 Score=160.45 Aligned_cols=334 Identities=15% Similarity=0.170 Sum_probs=225.5
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC---CEEEEEcCCCcEEEEEccCC
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg---~~LaSgs~Dg~I~vWdv~~~ 316 (755)
...|++|+++++.... ..|+||...++. +.+.+.+|..++..+.+.|.. .++++++.||.|++||...+
T Consensus 21 ~avfSnD~k~l~~~~~-~~V~VyS~~Tg~-------~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTG-NFVKVYSTATGE-------CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred ccccccCCcEEEEeeC-CEEEEEecchHh-------hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 3789999998776544 579999976544 334688999999999998854 57889999999999999999
Q ss_pred eeeeeeecCCCCCceeEEeeCCCC--ceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLS--QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
..++.+....... .+.+.+.... ..+.+....... .............-+.... ....+...+..|.. -..+
T Consensus 93 ~Llkt~~~~~~v~-~~~~~~~~a~~s~~~~~s~~~~~~--~~~~s~~~~~q~~~~~~~t--~~~~~~d~~~~~~~-~~~I 166 (792)
T KOG1963|consen 93 ELLKTFDNNLPVH-ALVYKPAQADISANVYVSVEDYSI--LTTFSKKLSKQSSRFVLAT--FDSAKGDFLKEHQE-PKSI 166 (792)
T ss_pred EEEEEEecCCcee-EEEechhHhCccceeEeeccccee--eeecccccccceeeeEeee--ccccchhhhhhhcC-CccE
Confidence 9888876544322 2222111111 111111111111 1000000000000000000 00111112223322 3567
Q ss_pred EEcCCCeEEEEeCCCcEEEEeCCCCeEEEE-----EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-----CeEE
Q 004410 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRV-----FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-----CQVV 464 (755)
Q Consensus 395 ~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~-----~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-----~~~~ 464 (755)
.+++.+.+...-.+..+.+|+..++..... ..|...++|.+++| +++++++|..||+|.+|.--. ..+.
T Consensus 167 ~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 167 VDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccce
Confidence 888888666666778899999887651111 12777799999999 999999999999999996432 2333
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
.+.-|...|++++|+++|.+|++|+..|.+.+|.+.+++... .+.-+..|..+.++| |+.+.++...|+.
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf---------LPRLgs~I~~i~vS~-ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF---------LPRLGSPILHIVVSP-DSDLYSLVLEDNQ 315 (792)
T ss_pred EEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc---------ccccCCeeEEEEEcC-CCCeEEEEecCce
Confidence 456688999999999999999999999999999999988432 122467899999999 8999999999999
Q ss_pred EEEEECCcceeeEEEe---------eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKAS---------AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~---------~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|.+....+...+.... ..+..+-.+.++++|--+.++-.+..|.|.+||+-+..
T Consensus 316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 9999876543322211 01123456778999977788888899999999998766
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.6e-15 Score=151.07 Aligned_cols=194 Identities=20% Similarity=0.271 Sum_probs=153.9
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCCeEE---EeccCC-cceE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV---DYTDIR-EIVS 474 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~~~~---~~~~~~-~~V~ 474 (755)
.++++-..|.|++||..+++.+..|. +...+..+.|... ....+++|+.||+|++||++....+ .+..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 67888889999999999999999995 7888888888763 4678999999999999999976543 444444 4677
Q ss_pred EEEEccCCCeEEEEeC----CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 475 AVCYCPDGKGGIVGTM----TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 475 ~v~~spdg~~la~gs~----dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
+++....++.+++|+. +-.|.+||++..+.. +......|...||+++|+|.++++|++|+.||.|.|+|+
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccch------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 7777778888888865 556999999987652 222345688999999999999999999999999999997
Q ss_pred Cccee-eEEEeeeccCCceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCCcc
Q 004410 551 ENVVG-KFKASAFRVAGSQMFATFTSDG-KHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 551 ~~~~~-~~~~~~~~~~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
..... ........+...|..+.|..++ +.|.+-+..+..++|+++.+...
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 75311 1111124566779999998876 56999999999999999988743
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=1.8e-15 Score=147.33 Aligned_cols=243 Identities=16% Similarity=0.246 Sum_probs=179.5
Q ss_pred eccCcceeecCCCC-----eeEEeeCCCeEEEEECCCC--cccccccccceeeecccccEEEEEEec-CCCEEEEEcCCC
Q 004410 235 IDRHGSATLKPGDH-----ELTLGQRMRRVRVHPVKKQ--SRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDG 306 (755)
Q Consensus 235 ~~~~~~~~~spdg~-----~lasgs~dg~V~Vw~~~~~--~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg 306 (755)
...++.+.|.|+.. +||+.+ ..+|+|.+... ...+...-....-..|..++++..|+. |.++|.+.+-|-
T Consensus 96 ~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 96 PYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 44556677877763 455543 36999998742 222222111122334678999999987 778999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+..|||++++.. .....++..
T Consensus 174 TCTiWdie~~~~-----------------------------------------------------------~~vkTQLIA 194 (364)
T KOG0290|consen 174 TCTIWDIETGVS-----------------------------------------------------------GTVKTQLIA 194 (364)
T ss_pred eEEEEEEeeccc-----------------------------------------------------------cceeeEEEe
Confidence 999999987621 001234668
Q ss_pred CCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE-e---cCCcEEEEEEeeCCCCEEEEEeCC-CcEEEEEcC
Q 004410 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-S---HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVR 459 (755)
Q Consensus 387 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~-~---h~~~V~~i~fsp~d~~~l~sgs~D-g~V~iwdl~ 459 (755)
|..+|.+++|...+ .+++.+.||.||++|++.-+.-..+ . ...+...++|++.+.+++++-..| ..|.|.|++
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 99999999999976 9999999999999999876654444 2 357789999999999999986655 569999998
Q ss_pred CC--eEEEeccCCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeE-eeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 460 RC--QVVDYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 460 ~~--~~~~~~~~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~-~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
.. .+..+..|...|.+|+|.|. ...|++++.|..+.+||+..-.. ..... +. ....++.|+.++|++..+.+
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP--il--ay~a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP--IL--AYTAGGEVNQIQWSSSQPDW 350 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc--hh--hhhccceeeeeeecccCCCE
Confidence 64 34478999999999999994 67899999999999999975432 10000 00 11256789999999988999
Q ss_pred EEEEECC
Q 004410 536 VIVTSAD 542 (755)
Q Consensus 536 l~s~s~D 542 (755)
++++...
T Consensus 351 iai~~~k 357 (364)
T KOG0290|consen 351 IAICFGK 357 (364)
T ss_pred EEEEecC
Confidence 9988754
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=6e-17 Score=176.61 Aligned_cols=272 Identities=20% Similarity=0.279 Sum_probs=203.1
Q ss_pred cccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecC
Q 004410 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349 (755)
Q Consensus 270 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (755)
.+..+...+.+.+|..+|.|+.|...|.+++||+.|..|+||..+++.+
T Consensus 176 mvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~------------------------------- 224 (1113)
T KOG0644|consen 176 MVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC------------------------------- 224 (1113)
T ss_pred HHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-------------------------------
Confidence 3445556677899999999999999999999999999999999776654
Q ss_pred cceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ec
Q 004410 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SH 427 (755)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h 427 (755)
+....||.+.|++++.+.++ ++++++.|..|++|-+..+.++.++ +|
T Consensus 225 -------------------------------lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh 273 (1113)
T KOG0644|consen 225 -------------------------------LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGH 273 (1113)
T ss_pred -------------------------------hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcc
Confidence 34567999999999999988 9999999999999999999999887 59
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-----eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCC
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-----~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~ 502 (755)
++.|++|+|+| - .+.+.||++++||.+-...+. .......+.++.|..++..+++|+.|+.-..|.+...
T Consensus 274 tgavtaiafsP-~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l 348 (1113)
T KOG0644|consen 274 TGAVTAIAFSP-R----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL 348 (1113)
T ss_pred ccceeeeccCc-c----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh
Confidence 99999999999 2 378899999999998222211 1233456788888889999999999999888876532
Q ss_pred eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEE
Q 004410 503 QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVV 581 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~ 581 (755)
... ...+.-+.++.+-..+.+++-.+-.+.+|++.+....... .+|...+..+.++|-.. ...
T Consensus 349 ~~~--------------~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l--~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 349 AWR--------------SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL--MGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred hhh--------------ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh--cccccceeeeeecCCCcHhhh
Confidence 211 1111222222222356667777888889998775444333 66888999999999654 556
Q ss_pred EEeCCCcEEEEEcCCCCcccCCCcc-cc-ceeeeecCCeEEEEcC
Q 004410 582 SPSEDSNIYIWNYSNQDKSSSRSKS-IW-SCESFLSHNVSVAIPW 624 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~~~~~~~~~-~~-~~~~f~~~~~~va~~w 624 (755)
+++.||.+.|||+-.+-++....+. .. .--+|...+.+++++-
T Consensus 413 sag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd 457 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD 457 (1113)
T ss_pred hccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCC
Confidence 8999999999999988755433322 11 1223555555666554
No 187
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.5e-16 Score=163.68 Aligned_cols=241 Identities=22% Similarity=0.401 Sum_probs=167.0
Q ss_pred cccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 274 ~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
+...++|.||+|.|.|+.|+.||.+|++|+.|-.+.|||.-..+.++.+
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI------------------------------- 88 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI------------------------------- 88 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee-------------------------------
Confidence 4455789999999999999999999999999999999998655433222
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCC----------e
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGID----------R 420 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~----------~ 420 (755)
-.||...|.++.|-|.. .+++|..|+.|+++|+... .
T Consensus 89 ------------------------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~ 138 (758)
T KOG1310|consen 89 ------------------------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEE 138 (758)
T ss_pred ------------------------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccc
Confidence 25899999999999843 8999999999999999742 2
Q ss_pred EEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-----------EeccCCcceEEEEEcc-CCCeEEE
Q 004410 421 CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----------DYTDIREIVSAVCYCP-DGKGGIV 487 (755)
Q Consensus 421 ~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-----------~~~~~~~~V~~v~~sp-dg~~la~ 487 (755)
.+..+. |...|..|+..|...+.|.+++.||+|+-+|++....- .+....-...++.++| +..+|++
T Consensus 139 ~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laV 218 (758)
T KOG1310|consen 139 TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAV 218 (758)
T ss_pred hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEe
Confidence 223333 89999999999955599999999999999999863211 1222224567899999 5678999
Q ss_pred EeCCCcEEEEECCCCeEeeeeeEEeccc-ccCCCCCeEEEE-EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC
Q 004410 488 GTMTGNCRFYDIKDNQLYQQNQICLQGK-KKLPGKRITGFQ-FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA 565 (755)
Q Consensus 488 gs~dg~I~iwD~~~~~~~~~~~~~~~~~-~~~~~~~I~~v~-fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 565 (755)
|+.+--.++||.+........ .+. .........++. |+| +. + ...+|.+ ....
T Consensus 219 GgsdpfarLYD~Rr~lks~~s----~~~~~~~pp~~~~cv~yf~p-~h--l--kn~~gn~----------------~~~~ 273 (758)
T KOG1310|consen 219 GGSDPFARLYDRRRVLKSFRS----DGTMNTCPPKDCRCVRYFSP-GH--L--KNSQGNL----------------DRYI 273 (758)
T ss_pred cCCCchhhhhhhhhhccCCCC----CccccCCCCcccchhheecC-cc--c--cCccccc----------------ccce
Confidence 999999999996532211100 000 001111122222 333 11 0 1111111 1112
Q ss_pred CceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 566 GSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 566 ~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
..++.+.|+|+|.-|+..-..-.||++|+..++..
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 24677899999987776666669999999988743
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=1.1e-14 Score=142.08 Aligned_cols=272 Identities=15% Similarity=0.223 Sum_probs=190.3
Q ss_pred CeeEEeeC----CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-----CEEEEEcCCCcEEEEEccCCee
Q 004410 248 HELTLGQR----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-----QYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 248 ~~lasgs~----dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-----~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
.+||.|+- .++|.|-.+.....++.... -..|.-+++.+.|.|+. .+|||++ ..+|+|.+...+.
T Consensus 60 ~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a----~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~ 133 (364)
T KOG0290|consen 60 FRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA----NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEES 133 (364)
T ss_pred eeEEEeeeccccCCeeEEEEEccCCCceeccC----CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCC
Confidence 36777764 46677777664443332211 13588899999999976 4677765 3799999864321
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
..... ++ .. ...-..+..++++..|+.
T Consensus 134 ~~~~~-------~~--L~--------------------------------------------~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 134 RVELQ-------SV--LN--------------------------------------------NNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred ceehh-------hh--hc--------------------------------------------cCcccccCCccccccccc
Confidence 10000 00 00 001123567899999998
Q ss_pred CC--eEEEEeCCCcEEEEeCCCCeE----EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE---EeccC
Q 004410 399 NG--FLLSSSADKTVRLWQVGIDRC----LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYTDI 469 (755)
Q Consensus 399 ~~--~L~s~s~Dg~V~iWdl~s~~~----~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~---~~~~~ 469 (755)
-. ++.+++-|-+..|||++++.. .+.+.|...|..|+|.....+.|++.+.||.||++|++..+-. .-...
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 66 889999999999999998733 3445799999999999866789999999999999999976433 22222
Q ss_pred -CcceEEEEEcc-CCCeEEEEeCC-CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 470 -REIVSAVCYCP-DGKGGIVGTMT-GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 470 -~~~V~~v~~sp-dg~~la~gs~d-g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
..+...++|++ |-+++|+-..| ..|.|.|++...... .....|...|++++|.|.....|++++.|..+.
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv-------a~L~~H~a~VNgIaWaPhS~~hictaGDD~qal 313 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV-------ARLRNHQASVNGIAWAPHSSSHICTAGDDCQAL 313 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce-------ehhhcCcccccceEecCCCCceeeecCCcceEE
Confidence 56788899998 55677775444 569999998654321 124457899999999999999999999999999
Q ss_pred EEECCcceeeE-E--EeeeccCCceEEEEEec-CCCEEEEEeC
Q 004410 547 VLCGENVVGKF-K--ASAFRVAGSQMFATFTS-DGKHVVSPSE 585 (755)
Q Consensus 547 iwd~~~~~~~~-~--~~~~~~~~~v~~l~fsp-dg~~L~sgs~ 585 (755)
|||+......- . .......+.|..+.|++ .+..|+.+..
T Consensus 314 iWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 314 IWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred EEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 99988754411 0 11123567899999985 4667776654
No 189
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=2.7e-14 Score=162.25 Aligned_cols=259 Identities=16% Similarity=0.229 Sum_probs=181.8
Q ss_pred eeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 278 QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
..+..|...|..++.++. +.+++||+.||+|+||+...-..-. . .
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~-s--------------------------- 1087 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------G-S--------------------------- 1087 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------c-e---------------------------
Confidence 346678999999998775 4999999999999999986432100 0 0
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeE-------EEEEe--
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-------LRVFS-- 426 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~-------~~~~~-- 426 (755)
.+...++.-....+.++...+.+ .+|.++.||.|++.+++.... .+...
T Consensus 1088 ---------------------~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~ 1146 (1431)
T KOG1240|consen 1088 ---------------------ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK 1146 (1431)
T ss_pred ---------------------eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeeccccc
Confidence 00112223345778889999888 999999999999999876211 11111
Q ss_pred cC-CcEEEEEEeeCCCC-EEEEEeCCCcEEEEEcCCCeEE---EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC
Q 004410 427 HN-NYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 427 h~-~~V~~i~fsp~d~~-~l~sgs~Dg~V~iwdl~~~~~~---~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~ 501 (755)
.. ..|..-+|...... .++.+..-+.|..||+++.... +.....+.|++++.+|.+.++++|+..|.+.+||++-
T Consensus 1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 22 33444455543455 7888888899999999986544 3445668899999999999999999999999999998
Q ss_pred CeEeeeeeEEecccccCCCCCeEEEEEcCCCC--CEEEEEE--CCCcEEEEECCcceeeEEEeee---------------
Q 004410 502 NQLYQQNQICLQGKKKLPGKRITGFQFSPSDP--SKVIVTS--ADSLVRVLCGENVVGKFKASAF--------------- 562 (755)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~--~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~--------------- 562 (755)
+.++.... ..+..+|+.+..+|..+ ...++++ ..+.|.+|++.+..+.......
T Consensus 1227 ~~~i~sw~-------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~ 1299 (1431)
T KOG1240|consen 1227 RVPILSWE-------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDA 1299 (1431)
T ss_pred Cceeeccc-------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccC
Confidence 87765433 22346778877777544 4555444 5788999998887655544222
Q ss_pred --ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 563 --RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 563 --~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+.-.....++..-+.++++|+.|..|+.||....+
T Consensus 1300 ~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1300 RKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred CCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 111122334454556789999999999999998877
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.65 E-value=4.6e-15 Score=158.16 Aligned_cols=234 Identities=18% Similarity=0.276 Sum_probs=175.8
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
.|..++|-|||..|+.+.. ..+.|||..+|..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~l----------------------------------------------- 45 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTL----------------------------------------------- 45 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccc-----------------------------------------------
Confidence 7999999999998877764 4799999987753
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEE
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l 444 (755)
+.++.+|...|.+++|+.+| .+++|+.|+.|.+|.-. -+-+..+.|++.|.|+.|+| -...|
T Consensus 46 ---------------lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP-~~h~L 108 (1081)
T KOG1538|consen 46 ---------------LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYSHNDAIQCMSFNP-ITHQL 108 (1081)
T ss_pred ---------------ccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeeccCCeeeEeecCc-hHHHh
Confidence 45678999999999999999 99999999999999854 33344567999999999999 77888
Q ss_pred EEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 445 ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
++++.. ..-+|......+.. ......+.+.+|..||++++.|-.+|+|.+-+-....... +. .......+|.
T Consensus 109 asCsLs-dFglWS~~qK~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~---I~---Rpgg~Nspiw 180 (1081)
T KOG1538|consen 109 ASCSLS-DFGLWSPEQKSVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVK---IE---RPGGSNSPIW 180 (1081)
T ss_pred hhcchh-hccccChhhhhHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceE---Ee---CCCCCCCCce
Confidence 888753 46788877655442 2344678899999999999999999999988654433221 11 1234678999
Q ss_pred EEEEcCCCC----CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 525 GFQFSPSDP----SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 525 ~v~fsp~d~----~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
+++|+|..+ ..+++.....++.++.+.. ++.+......-...++.+-++|.|++.|+.|+.+.+|--+
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG---~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSG---KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecc---eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec
Confidence 999999543 3566666666666665442 2222111222344678888999999999999999999644
No 191
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.3e-15 Score=157.79 Aligned_cols=302 Identities=16% Similarity=0.148 Sum_probs=224.9
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCC
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGED 305 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~D 305 (755)
...+..|..-+..+.|...|..|++|+.|..|.+||+......+. -..+|...|...+|-| +.+.|++++.|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------f~SGH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS------FESGHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc------cccccccchhhhhccCCCCCcCceecccc
Confidence 345667788888899999999999999999999999876654433 2357999999999988 45789999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|++=.+...... .....+.
T Consensus 209 gqvr~s~i~~t~~~-----------------------------------------------------------e~t~rl~ 229 (559)
T KOG1334|consen 209 GQVRVSEILETGYV-----------------------------------------------------------ENTKRLA 229 (559)
T ss_pred Cceeeeeeccccce-----------------------------------------------------------ecceecc
Confidence 99998765332211 0023345
Q ss_pred CCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe----cCC---cEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNN---YVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 386 gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~---~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
.|.+.|..++.-|+. .|++++.|+.+.-.|++++.....+. +.. ....|+.+|.+.++|++|+.|..+++|
T Consensus 230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY 309 (559)
T KOG1334|consen 230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY 309 (559)
T ss_pred cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence 699999999999988 89999999999999998876655442 333 678999999777899999999999999
Q ss_pred EcCCCeEE-------E------eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE--e-------eeeeEEecc
Q 004410 457 EVRRCQVV-------D------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL--Y-------QQNQICLQG 514 (755)
Q Consensus 457 dl~~~~~~-------~------~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~--~-------~~~~~~~~~ 514 (755)
|.+.-..- + .......|++++|+.++.-|++...|-.|++|.-..+.- . ...+..+.+
T Consensus 310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG 389 (559)
T KOG1334|consen 310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG 389 (559)
T ss_pred cccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcc
Confidence 98753211 1 113345699999999988888889999999995432221 0 000111223
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+.. ...|.++.|--....++++|+.-|.|.||+-.+....... .+-...|+|+.=+|--..||+.+-|.-|+||--
T Consensus 390 HrN--~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M--egDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 390 HRN--SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM--EGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ccc--ccccceeeeccCccceEEecCccceEEEEecchhHHHHHh--hcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 222 2347788775337889999999999999997764333222 223338899999999999999999999999987
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.+.+
T Consensus 466 ~~~e 469 (559)
T KOG1334|consen 466 LTAE 469 (559)
T ss_pred Cccc
Confidence 5554
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=4.7e-13 Score=135.05 Aligned_cols=281 Identities=16% Similarity=0.262 Sum_probs=183.9
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
..|..+.|+.|...|..|+.|| .++++.......... ......+.-..-....++.+.....+. .+.+.....
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~---~~~~~~IvEmLFSSSLvaiV~~~qpr~--Lkv~~~Kk~- 78 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSK---DTEGVSIVEMLFSSSLVAIVSIKQPRK--LKVVHFKKK- 78 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcc---cCCCeEEEEeecccceeEEEecCCCce--EEEEEcccC-
Confidence 4577778999999999999987 678877654431111 111111111112223333333322211 111111111
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCC
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVD 440 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d 440 (755)
..++.+. -...|.++.++.+. |+.+=.+ .|+|||+++.+.+.++. +...+.++.+++ .
T Consensus 79 --------------~~ICe~~-fpt~IL~VrmNr~R-LvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~ 140 (391)
T KOG2110|consen 79 --------------TTICEIF-FPTSILAVRMNRKR-LVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-A 140 (391)
T ss_pred --------------ceEEEEe-cCCceEEEEEccce-EEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-C
Confidence 1122221 34578888888765 4444333 39999999999999884 445566777666 5
Q ss_pred CCEEEEE--eCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCc-EEEEECCCCeEeeeeeEEecccc
Q 004410 441 DNYFISG--SIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGN-CRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 441 ~~~l~sg--s~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~-I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
+.+++.- ...|.|.|||+.+-+.+ .+..|++.+-+++|+++|.+||+++..|+ ||||.+.+++.+.++.-
T Consensus 141 n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR------ 214 (391)
T KOG2110|consen 141 NCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR------ 214 (391)
T ss_pred CceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC------
Confidence 6677652 24589999999998777 67789999999999999999999999998 79999999998876532
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee------------------------------------eEEEe
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG------------------------------------KFKAS 560 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~------------------------------------~~~~~ 560 (755)
......|.+++|+| +..+|++.+..++|+|+.+.+... .+...
T Consensus 215 G~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~ 293 (391)
T KOG2110|consen 215 GTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATA 293 (391)
T ss_pred CceeeEEEEEEECC-CCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEE
Confidence 12245799999999 899999999999999998553210 00000
Q ss_pred eeccCCceEEEEEe--cCCCEEEEEeCCCcEEEEEcCCC
Q 004410 561 AFRVAGSQMFATFT--SDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 561 ~~~~~~~v~~l~fs--pdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
.....+.-..+.+. +...++..++.||.++.|.++-.
T Consensus 294 ~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 294 KLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred EccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 00111111223343 47789999999999999999754
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=9.6e-15 Score=152.61 Aligned_cols=269 Identities=13% Similarity=0.220 Sum_probs=181.7
Q ss_pred cccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
.|...|.|+.|+.+...+.+++ |..+.+|.-.+......+..++.......+ +..... ........++..+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h-------~~~rs~-~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMH-------LGGRSS-GGGKGSDTLLICS 82 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCcccc-------cccccc-CCCCCcceEEEEc
Confidence 3666778999998777666655 555555544343333333322222111111 000001 1111122233344
Q ss_pred CCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeC
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV 439 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~ 439 (755)
.|+.+.+.+.. ++.-..+..|.+.|.+-.|+|+| -|++++.||.|++|.- +|-...++ +....|.|++|.|.
T Consensus 83 ~DGkf~il~k~-----~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 83 NDGRFVILNKS-----ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPN 156 (737)
T ss_pred CCceEEEeccc-----chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCC
Confidence 45555444332 23344567899999999999999 9999999999999984 34333333 47788999999995
Q ss_pred CCCEEEEEeCCCcEEEEEcCC-CeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 440 DDNYFISGSIDGKVRIWEVRR-CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~-~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
..+.+++.+ +.+.|=.+.. .++++|..|.+.|.++.|++....+++|+.|-..++||-....+.. ...
T Consensus 157 S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~---------S~~ 225 (737)
T KOG1524|consen 157 SNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT---------SAA 225 (737)
T ss_pred CCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc---------CCh
Confidence 555555543 5666666654 4677999999999999999999999999999999999988765542 345
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
|..+|++++|+| + ..+++++. +++| . .....+.|..++||+||..+++|...|.+.+=
T Consensus 226 ~ey~ITSva~np-d-~~~~v~S~-nt~R------------~-~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 226 EEYAITSVAFNP-E-KDYLLWSY-NTAR------------F-SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hccceeeeeecc-c-cceeeeee-eeee------------e-cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 788999999999 5 55555553 2222 1 14567899999999999999999999987653
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=6.2e-14 Score=136.66 Aligned_cols=276 Identities=17% Similarity=0.248 Sum_probs=193.6
Q ss_pred CCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCC-------CcEEEEEccCCeeeeeeecCCC
Q 004410 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGED-------GTVRVWKVIEHERLDGFDVQDT 327 (755)
Q Consensus 256 dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~D-------g~I~vWdv~~~~~~~~~~~~~~ 327 (755)
++.|.+-++......+ +.+.|..|.+.|+.|+-+| |.+.|+|+-.+ ..+.||.+.........
T Consensus 39 dNqVhll~~d~e~s~l----~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~----- 109 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSEL----LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS----- 109 (370)
T ss_pred cceeEEEEecCccchh----hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-----
Confidence 5667777665443322 2345778999999999999 55677776442 23567776543211000
Q ss_pred CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec-CCCCCEEEEEEcCCC-eEEEE
Q 004410 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSS 405 (755)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~-~L~s~ 405 (755)
..-..+..+. .+-+.|.|+.|.|++ .+++.
T Consensus 110 ------------------------------------------------~tlE~v~~Ldteavg~i~cvew~Pns~klasm 141 (370)
T KOG1007|consen 110 ------------------------------------------------STLECVASLDTEAVGKINCVEWEPNSDKLASM 141 (370)
T ss_pred ------------------------------------------------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence 0001122222 355689999999998 66655
Q ss_pred eCCCcEEEEeCCCCeE-EEEE------ecCCcEEEEEEee-CCCCEEEEEeCCCcEEEEEcCCCeEEE--eccCCcceEE
Q 004410 406 SADKTVRLWQVGIDRC-LRVF------SHNNYVTSVAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSA 475 (755)
Q Consensus 406 s~Dg~V~iWdl~s~~~-~~~~------~h~~~V~~i~fsp-~d~~~l~sgs~Dg~V~iwdl~~~~~~~--~~~~~~~V~~ 475 (755)
. |..|.+|++..+.. ...+ .+....++-+|+| .+++.+++. .|++++.||+++..... -..|...|..
T Consensus 142 ~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrd 219 (370)
T KOG1007|consen 142 D-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRD 219 (370)
T ss_pred c-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeee
Confidence 5 88999999987765 3333 2567788999999 566666665 58999999999866552 3456778999
Q ss_pred EEEccCCC-eEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce
Q 004410 476 VCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV 554 (755)
Q Consensus 476 v~~spdg~-~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~ 554 (755)
+.|+|+-+ +|++|+.||.|+|||++..+.... ....|...+.++.|+|....+|++++.|..|.+|......
T Consensus 220 lDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~-------el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 220 LDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ-------ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred ccCCCCceEEEEEcCCCccEEEEeccCCCcccc-------ccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 99999765 567789999999999997654321 2445788999999999989999999999999999643211
Q ss_pred --------------------ee---E----EEeeeccCCceEEEEEecCCCE-EEEEeCCCcEEEEEcCCC
Q 004410 555 --------------------GK---F----KASAFRVAGSQMFATFTSDGKH-VVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 555 --------------------~~---~----~~~~~~~~~~v~~l~fspdg~~-L~sgs~Dg~I~iWd~~~~ 597 (755)
.+ + ......|...|.+++||.-..+ +|+-+.||.+.|=++...
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 00 0 1123458889999999876554 678899999999877543
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=1.8e-14 Score=150.64 Aligned_cols=208 Identities=21% Similarity=0.306 Sum_probs=152.8
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCC
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~ 327 (755)
..++..+.||++.|-+-..+ ..+.+.+|.++|.|-.|+|||.-|+|+|+||.|++|.- +|-.-..+.....
T Consensus 76 d~~~i~s~DGkf~il~k~~r--------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR--------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEecccch--------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCc
Confidence 45677888998888763321 22346789999999999999999999999999999983 5544444555566
Q ss_pred CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe
Q 004410 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (755)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s 406 (755)
.+.|+.|.++....+++.. ..+.+-+... ...+...+.|.+-|.++.|++.. .+++|+
T Consensus 147 ~v~c~~W~p~S~~vl~c~g-----------------~h~~IKpL~~----n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG 205 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQG-----------------GHISIKPLAA----NSKIIRWRAHDGLVLSLSWSTQSNIIASGG 205 (737)
T ss_pred eeEEEEECCCCCceEEecC-----------------CeEEEeeccc----ccceeEEeccCcEEEEeecCccccceeecC
Confidence 7788888887765544321 1111111110 12245678999999999999988 999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEE
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la 486 (755)
.|-..+|||.........-.|..+|++++|+| + ..++.++. +++|+ .....+.|..++|++||..++
T Consensus 206 ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~-nt~R~----------~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 206 EDFRFKIWDAQGANLFTSAAEEYAITSVAFNP-E-KDYLLWSY-NTARF----------SSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred CceeEEeecccCcccccCChhccceeeeeecc-c-cceeeeee-eeeee----------cCCCccceEEEEEcCCCceee
Confidence 99999999976555555556999999999999 6 66666664 33441 123456789999999999999
Q ss_pred EEeCCCcEEEEE
Q 004410 487 VGTMTGNCRFYD 498 (755)
Q Consensus 487 ~gs~dg~I~iwD 498 (755)
+|+..|.+.+-.
T Consensus 273 ~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 273 CGTSTGQLIVAY 284 (737)
T ss_pred ccccCceEEEee
Confidence 999999876543
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=4.5e-14 Score=139.71 Aligned_cols=248 Identities=17% Similarity=0.264 Sum_probs=186.7
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
..+|+|.+|++|+..+|.+.....|.||.....+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------------------------------- 44 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------------------------------- 44 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC---------------------------------------------
Confidence 46899999999999999999999999998654431
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeC-CCCeEE---EEEecCCcEEEEEEee
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRCL---RVFSHNNYVTSVAFNP 438 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl-~s~~~~---~~~~h~~~V~~i~fsp 438 (755)
-++.+++..|...|+.+.|+|.. .|++++.|+.-++|.. ..++-. ..+.++..++++.|+|
T Consensus 45 --------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP 110 (361)
T KOG1523|consen 45 --------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP 110 (361)
T ss_pred --------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC
Confidence 23467889999999999999988 9999999999999998 444333 3346999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEE-----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee------
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ------ 507 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~-----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~------ 507 (755)
.++.|++|+.-..|.||-++...-- ....++..|+++.|+|++-+|++|+.|+.+++|..--..+-..
T Consensus 111 -~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pW 189 (361)
T KOG1523|consen 111 -KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPW 189 (361)
T ss_pred -cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCC
Confidence 9999999999999999988765432 2345667899999999999999999999999996531111000
Q ss_pred -eeE---EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE
Q 004410 508 -NQI---CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 508 -~~~---~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
.++ .+........+.+..+.|+| .+..|+-.+.|+.+.+-|.....+........+ -+..++.|-.+ ..++.+
T Consensus 190 gsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise-~~vv~a 266 (361)
T KOG1523|consen 190 GSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWISE-NSVVAA 266 (361)
T ss_pred ccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCchhccchhhcc-CCceeeEeecC-Cceeec
Confidence 000 01111224678899999999 899999999999999999776543332221223 56677777654 456667
Q ss_pred eCCCcEEEEEc
Q 004410 584 SEDSNIYIWNY 594 (755)
Q Consensus 584 s~Dg~I~iWd~ 594 (755)
+.|..-.++..
T Consensus 267 g~~c~P~lf~~ 277 (361)
T KOG1523|consen 267 GYDCGPVLFVT 277 (361)
T ss_pred CCCCCceEEEe
Confidence 77755444444
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=4.4e-14 Score=160.57 Aligned_cols=307 Identities=13% Similarity=0.128 Sum_probs=199.7
Q ss_pred eeeeccCcceeecC-CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEE
Q 004410 232 ARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 232 ~~~~~~~~~~~~sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~v 310 (755)
..|...+..++.++ .+.++++|+.||+||||+..+............++.--...+.++...+.++.+|.++.||.|++
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 33444455555555 45999999999999999988766554555555566656778999999999999999999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
.++......+.. +... .+.........
T Consensus 1125 ~~id~~~~~~~~--------~~~~---------------------------------------------ri~n~~~~g~v 1151 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRV--------ATQV---------------------------------------------RIPNLKKDGVV 1151 (1431)
T ss_pred EEccccccccce--------eeee---------------------------------------------ecccccCCCce
Confidence 998653110000 0000 00000111111
Q ss_pred EEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 391 VLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 391 V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
|...+|... . .|+.+..-+.|..||++....+..++ ..+.|++++.+| .++++++|+..|.+.+||++=+..+
T Consensus 1152 v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i 1230 (1431)
T KOG1240|consen 1152 VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPI 1230 (1431)
T ss_pred EEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCcee
Confidence 222223221 2 67778888999999998877666554 458899999999 8999999999999999999988777
Q ss_pred E--eccCCcceEEEEEccCC---CeEEEEe--CCCcEEEEECCCCeEeeeeeEE-----ecccccC------CCCCeEEE
Q 004410 465 D--YTDIREIVSAVCYCPDG---KGGIVGT--MTGNCRFYDIKDNQLYQQNQIC-----LQGKKKL------PGKRITGF 526 (755)
Q Consensus 465 ~--~~~~~~~V~~v~~spdg---~~la~gs--~dg~I~iwD~~~~~~~~~~~~~-----~~~~~~~------~~~~I~~v 526 (755)
. ...+...|+.++.+|-. ...++++ ..+.|.+|++.++.....+-.. +...... +.-.....
T Consensus 1231 ~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~ 1310 (1431)
T KOG1240|consen 1231 LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISC 1310 (1431)
T ss_pred ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceee
Confidence 3 33455778888888733 3444444 4677999999998665543322 0000000 11111122
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCcceee----------E------------------------------E--------
Q 004410 527 QFSPSDPSKVIVTSADSLVRVLCGENVVGK----------F------------------------------K-------- 558 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~----------~------------------------------~-------- 558 (755)
.+.- .+..+++|+.|..|+.||....... + .
T Consensus 1311 ~~~~-~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~ 1389 (1431)
T KOG1240|consen 1311 GVCE-KNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQK 1389 (1431)
T ss_pred eccc-CCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccc
Confidence 2222 5678999999999999994432111 0 0
Q ss_pred ------EeeeccCCceEEEEEecC-CCEEEEEeCCCcEEEEE
Q 004410 559 ------ASAFRVAGSQMFATFTSD-GKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 559 ------~~~~~~~~~v~~l~fspd-g~~L~sgs~Dg~I~iWd 593 (755)
.....|..+|+++++-.. ..+|++++.||.|+||.
T Consensus 1390 ~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1390 LRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 001225566777776433 46899999999999994
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4.5e-14 Score=157.25 Aligned_cols=234 Identities=18% Similarity=0.146 Sum_probs=160.0
Q ss_pred CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC---CcEEEEEccCCeeeeeeecCCCCCcee
Q 004410 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL 332 (755)
Q Consensus 256 dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~ 332 (755)
+..|.|||..... .+.+..|...|...+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~--------~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------------ 242 (429)
T PRK01742 183 PYEVRVADYDGFN--------QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------------ 242 (429)
T ss_pred eEEEEEECCCCCC--------ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------------
Confidence 4789999976432 13456788899999999999999988654 369999987664210
Q ss_pred EEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEE-eCCCc
Q 004410 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SADKT 410 (755)
Q Consensus 333 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~-s~Dg~ 410 (755)
+..+.+|. ..++|+||| .|+.+ +.+|.
T Consensus 243 ------------------------------------------------l~~~~g~~---~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 243 ------------------------------------------------VASFRGHN---GAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ------------------------------------------------EecCCCcc---CceeECCCCCEEEEEEecCCc
Confidence 11122332 357999999 66665 46776
Q ss_pred EEEE--eCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEEcCC--CeEEEeccCCcceEEEEEccCCCeE
Q 004410 411 VRLW--QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGG 485 (755)
Q Consensus 411 V~iW--dl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iwdl~~--~~~~~~~~~~~~V~~v~~spdg~~l 485 (755)
+.|| |+.+++......+...+....|+| +++.|+..+ .+|...||++.. +..... .+.. ..+.|+|||+.|
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTL 347 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEE
Confidence 5555 777777665556777788999999 888766554 578888887643 333222 3332 457899999999
Q ss_pred EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC
Q 004410 486 IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA 565 (755)
Q Consensus 486 a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 565 (755)
+..+.++ +.+||+.++..... ... .....+.|+| ++.+|+.++.++.+.+|.+.............|.
T Consensus 348 a~~~~~~-i~~~Dl~~g~~~~l-----t~~-----~~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 348 VMINGDN-VVKQDLTSGSTEVL-----SST-----FLDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred EEEcCCC-EEEEECCCCCeEEe-----cCC-----CCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC
Confidence 8887754 56699988765421 110 1224578999 8999999999999988876443333333234566
Q ss_pred CceEEEEEecC
Q 004410 566 GSQMFATFTSD 576 (755)
Q Consensus 566 ~~v~~l~fspd 576 (755)
+.+..++|+|-
T Consensus 416 g~~~~p~wsp~ 426 (429)
T PRK01742 416 GQVKFPAWSPY 426 (429)
T ss_pred CCCCCcccCCC
Confidence 77888899874
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.3e-14 Score=148.86 Aligned_cols=192 Identities=31% Similarity=0.413 Sum_probs=150.1
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEE
Q 004410 288 LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV 367 (755)
Q Consensus 288 ~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (755)
.+++|+.+|..|++++.||++|||++.+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t------------------------------------------------- 178 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT------------------------------------------------- 178 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-------------------------------------------------
Confidence 7899999999999999999999999755432
Q ss_pred EeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCC--
Q 004410 368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDD-- 441 (755)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~-- 441 (755)
+.....|...|.+|.|+||+ .|++.+.| ..+||++.++.++.... .+.....+.|.. ++
T Consensus 179 -------------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~ 243 (398)
T KOG0771|consen 179 -------------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQ 243 (398)
T ss_pred -------------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCC
Confidence 23345688999999999999 99999999 99999999997776654 344566677776 55
Q ss_pred -CE--EEEEeCCCcEEEEEcCCCe------EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe
Q 004410 442 -NY--FISGSIDGKVRIWEVRRCQ------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 442 -~~--l~sgs~Dg~V~iwdl~~~~------~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
.+ ++....-+.|+.||+.... ..+.......|++++.++||+++++|+.+|.|.||+..+.+..+.
T Consensus 244 ~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~----- 318 (398)
T KOG0771|consen 244 ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY----- 318 (398)
T ss_pred ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe-----
Confidence 33 3333445667777764321 123334456899999999999999999999999999988776542
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
.+..|..-||.+.|+| +.+.++..+.+..+.|..+.
T Consensus 319 --vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 319 --VKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred --ehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEe
Confidence 3567888999999999 88999999998888887643
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.6e-13 Score=130.69 Aligned_cols=247 Identities=14% Similarity=0.184 Sum_probs=177.3
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
..|..-+|+|.+++|+.|..+|.|.+..+.+-..-...
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~------------------------------------------ 48 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE------------------------------------------ 48 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC------------------------------------------
Confidence 35777789999999999999999999988643210000
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCe----EEEEE-----e-----cCCc
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR----CLRVF-----S-----HNNY 430 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~----~~~~~-----~-----h~~~ 430 (755)
.....++..+++|.++|+.++|+ +.+|++++. |.|+-|.-+... +...+ . .-..
T Consensus 49 ----------~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPe 116 (325)
T KOG0649|consen 49 ----------PPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPE 116 (325)
T ss_pred ----------CCCCcceeeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCc
Confidence 00013355568999999999998 446776665 999999754321 11111 1 2346
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
|+++-..| ..+-++.++.|+.++-||+++++.. .+.+|.+.|.++.-......+++|+.||++++||+++++.+..+.
T Consensus 117 INam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 117 INAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred cceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 89999999 5555666668999999999999987 688999999999997767789999999999999999999877544
Q ss_pred EEeccc--ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 510 ICLQGK--KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 510 ~~~~~~--~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
..-... ...-+..|.+++.+ ..++++| ....+.+|.+......... ...+++..+.|-. +.+++++..+
T Consensus 196 ~yk~~~~lRp~~g~wigala~~---edWlvCG-gGp~lslwhLrsse~t~vf---pipa~v~~v~F~~--d~vl~~G~g~ 266 (325)
T KOG0649|consen 196 PYKNPNLLRPDWGKWIGALAVN---EDWLVCG-GGPKLSLWHLRSSESTCVF---PIPARVHLVDFVD--DCVLIGGEGN 266 (325)
T ss_pred cccChhhcCcccCceeEEEecc---CceEEec-CCCceeEEeccCCCceEEE---ecccceeEeeeec--ceEEEecccc
Confidence 321111 11134557777764 4666655 4567899999887666554 3456677778854 5788888888
Q ss_pred cEEEEEcC
Q 004410 588 NIYIWNYS 595 (755)
Q Consensus 588 ~I~iWd~~ 595 (755)
.|.-|.+.
T Consensus 267 ~v~~~~l~ 274 (325)
T KOG0649|consen 267 HVQSYTLN 274 (325)
T ss_pred ceeeeeec
Confidence 89988875
No 201
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.60 E-value=1.9e-13 Score=139.27 Aligned_cols=258 Identities=20% Similarity=0.349 Sum_probs=178.3
Q ss_pred ccEEEEEEecCCC-EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 285 GSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 285 ~~V~~l~fspdg~-~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
.+|..+.|.++.. .||||+.|..|+||.+..+..-. ++
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-----------------------------------------~~ 52 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-----------------------------------------GD 52 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCC-----------------------------------------Cc
Confidence 5799999998766 99999999999999987654210 00
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCC--------C-----C---eEEEEE-
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG--------I-----D---RCLRVF- 425 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~--------s-----~---~~~~~~- 425 (755)
.. -..+..+..|...|+++.|+|+| .|++|+.+|.|.+|... + . ...+.+
T Consensus 53 ~~------------V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr 120 (434)
T KOG1009|consen 53 MK------------VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR 120 (434)
T ss_pred ee------------EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec
Confidence 00 01134577899999999999999 99999999999999765 2 1 112222
Q ss_pred ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 426 ~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
.|...|..++|+| +++++++++.|..+++||+..+++. ...+|...+..++|.|-++++++-+.|...+.+.+...+.
T Consensus 121 ~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 121 GHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred ccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 3899999999999 9999999999999999999999988 5778889999999999999999999999888888876665
Q ss_pred eeeeeEE-ecccc-cC---------CC----CCeEEEEEcCCCCCEEEEEEC----CC-----cEEEEECCcceeeEEEe
Q 004410 505 YQQNQIC-LQGKK-KL---------PG----KRITGFQFSPSDPSKVIVTSA----DS-----LVRVLCGENVVGKFKAS 560 (755)
Q Consensus 505 ~~~~~~~-~~~~~-~~---------~~----~~I~~v~fsp~d~~~l~s~s~----Dg-----~I~iwd~~~~~~~~~~~ 560 (755)
....... +.... .. |. .-...++|+| ++.++++... .+ ..++++..........
T Consensus 200 ~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~- 277 (434)
T KOG1009|consen 200 IKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR- 277 (434)
T ss_pred eeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceee-
Confidence 5443311 11111 01 11 1134467899 8888887532 22 3355654433222211
Q ss_pred eeccCCceEEEEEec------------------CCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 561 AFRVAGSQMFATFTS------------------DGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 561 ~~~~~~~v~~l~fsp------------------dg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
+.....+...+.|+| -+..++.++. ..|+|||..+..+
T Consensus 278 lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P 333 (434)
T KOG1009|consen 278 LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEP 333 (434)
T ss_pred cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccc
Confidence 112222333333333 2233455554 5899999987664
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.59 E-value=6.4e-14 Score=155.46 Aligned_cols=251 Identities=20% Similarity=0.199 Sum_probs=173.9
Q ss_pred eccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC--CEEEEEcCCCcEEEE
Q 004410 235 IDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVW 311 (755)
Q Consensus 235 ~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg--~~LaSgs~Dg~I~vW 311 (755)
...+.++.|+|... ++|.|..+|.|.+||+......+.. ........|..+|+.+.|-.+. .-+++++.||.|..|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 34577899999876 6677888999999999876653221 1222345699999999997754 449999999999999
Q ss_pred EccCCeeeeeeec------------CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC-
Q 004410 312 KVIEHERLDGFDV------------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE- 378 (755)
Q Consensus 312 dv~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 378 (755)
++..-........ ......++.|.+.... ..+.++..+.+..-.........
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~---------------~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN---------------HFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCc---------------eEEEEcCCcEEEEEeccCCccccc
Confidence 8765433111110 0111222333333222 23344444444442222222222
Q ss_pred ---ccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCC-CCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCC
Q 004410 379 ---KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG-IDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451 (755)
Q Consensus 379 ---~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~-s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg 451 (755)
++...+..|.+.|..+.++|-+ .+++++ |-+|+||... ...++..+ .+...|++++|+|.....|+++..||
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 4566778899999999999977 555555 9999999877 55555555 47788999999998889999999999
Q ss_pred cEEEEEcCCCeE---EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCC
Q 004410 452 KVRIWEVRRCQV---VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (755)
Q Consensus 452 ~V~iwdl~~~~~---~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~ 502 (755)
.|.|||+..... ..........+.+.|+++|+.|++|...|++++|++...
T Consensus 465 ~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 999999976432 233333566778889999999999999999999999643
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=150.61 Aligned_cols=292 Identities=21% Similarity=0.268 Sum_probs=206.6
Q ss_pred ccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcce
Q 004410 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI 352 (755)
Q Consensus 273 ~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 352 (755)
.+.....|..|.|.|..|.|+..|..|++|+.|..|.+||+..+..+..+
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f------------------------------ 180 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF------------------------------ 180 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc------------------------------
Confidence 33444568899999999999999999999999999999999877643222
Q ss_pred eeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCC-CCeEEEE---E
Q 004410 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVG-IDRCLRV---F 425 (755)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~-s~~~~~~---~ 425 (755)
..||...|....|.|.. .+++++.||.|++=.+. ++.+..+ .
T Consensus 181 -------------------------------~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~ 229 (559)
T KOG1334|consen 181 -------------------------------ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA 229 (559)
T ss_pred -------------------------------ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc
Confidence 24687888777888754 89999999999998764 3443322 2
Q ss_pred ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE----EeccCCc---ceEEEEEccCC-CeEEEEeCCCcEEEE
Q 004410 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV----DYTDIRE---IVSAVCYCPDG-KGGIVGTMTGNCRFY 497 (755)
Q Consensus 426 ~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~----~~~~~~~---~V~~v~~spdg-~~la~gs~dg~I~iw 497 (755)
.|.+.|.-++.-|.+..-|.+++.|+.|.-+|++..... ....... ...+++..|.. ..+++|+.|..+++|
T Consensus 230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY 309 (559)
T KOG1334|consen 230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY 309 (559)
T ss_pred cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence 599999999999988889999999999999999875432 2222222 56889999955 489999999999999
Q ss_pred ECCCCeEeeee----eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee---------------eEE
Q 004410 498 DIKDNQLYQQN----QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG---------------KFK 558 (755)
Q Consensus 498 D~~~~~~~~~~----~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~---------------~~~ 558 (755)
|.+.-...... +.+...........|++++|+. ++.-+++...|-.|+++.-.-... .++
T Consensus 310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK 388 (559)
T KOG1334|consen 310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK 388 (559)
T ss_pred cccchhhccccchhhhcCCccccccCcccceeEEecC-CccceeeeecccceEEeccccccCCCCCCCcchhhccchhhc
Confidence 98754332100 0000001112345799999998 778888888999999995322111 133
Q ss_pred EeeeccCCceEEEE-EecCCCEEEEEeCCCcEEEEEcCCCCcccC--CCccccceeeeecCCeEEEEcCCCCCcC
Q 004410 559 ASAFRVAGSQMFAT-FTSDGKHVVSPSEDSNIYIWNYSNQDKSSS--RSKSIWSCESFLSHNVSVAIPWVGLETT 630 (755)
Q Consensus 559 ~~~~~~~~~v~~l~-fspdg~~L~sgs~Dg~I~iWd~~~~~~~~~--~~~~~~~~~~f~~~~~~va~~w~g~~~~ 630 (755)
+ ..+...|..+- |-|...|+++|+.-|.|.||+-.+++-+.. --+.+..| ..+|+-...++-+|+...
T Consensus 389 G--HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNC--LEpHP~~PvLAsSGid~D 459 (559)
T KOG1334|consen 389 G--HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNC--LEPHPHLPVLASSGIDHD 459 (559)
T ss_pred c--cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEec--cCCCCCCchhhccCCccc
Confidence 3 33444566665 478899999999999999999988873322 22223333 444555555666666543
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.2e-13 Score=152.68 Aligned_cols=271 Identities=20% Similarity=0.221 Sum_probs=183.4
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
+.-..+.|+|-...++++...-.|+|||.+.++.+..|....
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-------------------------------------- 1106 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-------------------------------------- 1106 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC--------------------------------------
Confidence 355678899988899999878899999999988765554221
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCC-----CCeEEEEEe--------cC
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVG-----IDRCLRVFS--------HN 428 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~-----s~~~~~~~~--------h~ 428 (755)
.....|+++.+.+.. .+++++.||.||||+-- ..+.+.-+. ..
T Consensus 1107 ---------------------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r 1165 (1387)
T KOG1517|consen 1107 ---------------------FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGAR 1165 (1387)
T ss_pred ---------------------CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCC
Confidence 123467788877643 89999999999999632 223333321 11
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe--ccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~--~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
+.=.-+.|.. ...+|++++.-..|+|||....+++.- ......|+++.-+- .|+.|++|..||.|++||.+.....
T Consensus 1166 ~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1166 GTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred CCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc
Confidence 1113356776 444555555578999999998887742 23445577775543 5799999999999999999865442
Q ss_pred eeeeEEecccccCCCCC--eEEEEEcCCCCCEEEEEECCCcEEEEECCcc-eeeEEEeeeccC--C-ceEEEEEecCCCE
Q 004410 506 QQNQICLQGKKKLPGKR--ITGFQFSPSDPSKVIVTSADSLVRVLCGENV-VGKFKASAFRVA--G-SQMFATFTSDGKH 579 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~--I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~--~-~v~~l~fspdg~~ 579 (755)
.. ....+.|... |..+.+.+.+-..|++|+.+|.|++||++.. ...+... ..|. + ..+++..+++...
T Consensus 1245 s~-----v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i-v~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1245 SL-----VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI-VAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred cc-----ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee-eeccccCccceeeeeccCCCe
Confidence 11 1112334444 9999998855557999999999999998862 2222221 1121 3 4899999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCc--------ccCCCccccceeeeecCCeEEEE
Q 004410 580 VVSPSEDSNIYIWNYSNQDK--------SSSRSKSIWSCESFLSHNVSVAI 622 (755)
Q Consensus 580 L~sgs~Dg~I~iWd~~~~~~--------~~~~~~~~~~~~~f~~~~~~va~ 622 (755)
||+|+. +.|+||++....- -..+.+...+|..|..|..-+|+
T Consensus 1319 iAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAa 1368 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAA 1368 (1387)
T ss_pred eeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhh
Confidence 999999 9999999976541 11223333466666666544433
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=7.5e-14 Score=143.25 Aligned_cols=202 Identities=21% Similarity=0.259 Sum_probs=140.8
Q ss_pred cceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCee
Q 004410 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 239 ~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
..++|+++|..|++|+.||++|||+....... .+..+|.+.|.+|.|+|||++|++-+.| ..+||+++++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh-------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence 45999999999999999999999996544332 3356899999999999999999999999 999999999966
Q ss_pred eeeeecCCC--CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceecc-CccceEecCCCCCEEEEE
Q 004410 319 LDGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 319 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~V~~l~ 395 (755)
+........ ....+.|..+.....+.+..... ....+..+....|.-. --+..+...-...|.+++
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~-----------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQF-----------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecC-----------CCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence 555442211 11223333333221111111100 0111111111111110 001112222345699999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.+.+| +++.|++||.|-|++..+-++++..+ |...|+.+.|+| +.+++++.+.|....|..+.-
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 99999 99999999999999999999988885 999999999999 999999999998888877654
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=4.4e-13 Score=141.68 Aligned_cols=280 Identities=17% Similarity=0.188 Sum_probs=192.1
Q ss_pred cccccEEEEEEecCCCEE-EEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 282 AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.|...-+.|..+|||+|| |||..--.|++||+..-....+-......+..... .+...+...+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiL--------------sDD~SK~v~L~- 113 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEIL--------------SDDYSKSVFLQ- 113 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEe--------------ccchhhheEee-
Confidence 477888999999999986 55666779999999776544332221111111111 11111111111
Q ss_pred cCCceEEEeCCcceeccCcc-c-eEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEE
Q 004410 361 SSDLTCVVLPPKVFRLLEKP-L-HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~-~-~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~f 436 (755)
..+...+..+. . ..+. -...-.+|+++.-. -|+.++....|+-++++.|..+..|. ..+.++++..
T Consensus 114 ---------~DR~IefHak~G~hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 114 ---------NDRTIEFHAKYGRHYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSI 183 (703)
T ss_pred ---------cCceeeehhhcCeeeeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeee
Confidence 11100000000 0 0000 01223467777655 56666667789999999999999997 5589999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc-------CCc-----ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-------IRE-----IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~-------~~~-----~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
++ ...+|++|+.+|.|-.||.++...+.... +.. .|+++.|+.+|-.+++|+.+|.+.|||++..+.
T Consensus 184 n~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 184 NE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred cC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 99 88899999999999999999876553221 222 399999999999999999999999999998876
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
+.. +.....-+|..+.|.+.+..-.++......++|||-.+....... .....+..+|+-|++-++++|-
T Consensus 263 l~~-------kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asi---Ept~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 263 LLV-------KDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASI---EPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred eee-------cccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeec---cccCCcCceeeecCCceEEEec
Confidence 542 223345678999998866666677777789999998776655443 3455689999999999999999
Q ss_pred CCCcEEEEEcCCC
Q 004410 585 EDSNIYIWNYSNQ 597 (755)
Q Consensus 585 ~Dg~I~iWd~~~~ 597 (755)
+++.+..|=+..-
T Consensus 333 e~~~m~~yyiP~L 345 (703)
T KOG2321|consen 333 ESSKMHTYYIPSL 345 (703)
T ss_pred CCCcceeEEcccc
Confidence 9988887766543
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=5e-14 Score=147.69 Aligned_cols=227 Identities=18% Similarity=0.283 Sum_probs=167.7
Q ss_pred ccccccc---cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CC
Q 004410 222 RGWLKKL---GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DG 296 (755)
Q Consensus 222 ~~w~~~~---~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg 296 (755)
..|++++ +.+.+|..-|+++.|+.+|.+|++|+.|-++.|||.-..+ .+.. .-.||.+.|.+++|-| +.
T Consensus 34 s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K-llhs-----I~TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 34 STWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK-LLHS-----ISTGHTANIFSVKFVPYTNN 107 (758)
T ss_pred cHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc-eeee-----eecccccceeEEeeeccCCC
Confidence 4455554 3588999999999999999999999999999999976322 1211 1358999999999999 56
Q ss_pred CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec
Q 004410 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (755)
Q Consensus 297 ~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (755)
+.++||..|..|+|+|+...+.-.. . .-
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~-d---------------------------------------------------~~ 135 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGM-D---------------------------------------------------HG 135 (758)
T ss_pred eEEEeccCcceEEEEeccccccccc-c---------------------------------------------------cC
Confidence 7999999999999999875321000 0 00
Q ss_pred cCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeE-------EEEE----ecCCcEEEEEEeeCCCCE
Q 004410 377 LEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-------LRVF----SHNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 377 ~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~-------~~~~----~h~~~V~~i~fsp~d~~~ 443 (755)
...+.+.+..|...|..|+-.|++ .+.+++.||+|+-+|++.... ...+ ..--...|+.++|.+..+
T Consensus 136 ~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~ 215 (758)
T KOG1310|consen 136 MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYY 215 (758)
T ss_pred ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCce
Confidence 023345567899999999999998 899999999999999975321 1111 122457899999999999
Q ss_pred EEEEeCCCcEEEEEcCCC------------------eEEEe--ccCC-----------cceEEEEEccCCCeEEEEeCCC
Q 004410 444 FISGSIDGKVRIWEVRRC------------------QVVDY--TDIR-----------EIVSAVCYCPDGKGGIVGTMTG 492 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~------------------~~~~~--~~~~-----------~~V~~v~~spdg~~la~gs~dg 492 (755)
|++|+.|-..++||.+.. .++.. .+|- ..++-+.|+|+|.-|++.-..-
T Consensus 216 laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE 295 (758)
T KOG1310|consen 216 LAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE 295 (758)
T ss_pred EEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe
Confidence 999999999999995421 11211 1111 1257789999999999977777
Q ss_pred cEEEEECCCCeEee
Q 004410 493 NCRFYDIKDNQLYQ 506 (755)
Q Consensus 493 ~I~iwD~~~~~~~~ 506 (755)
.|+++|+..++...
T Consensus 296 hVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 296 HVYLFDVNEDKSPT 309 (758)
T ss_pred EEEEEeecCCCCce
Confidence 89999998766543
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=6.5e-13 Score=139.51 Aligned_cols=191 Identities=18% Similarity=0.243 Sum_probs=151.3
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC----------
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR---------- 460 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~---------- 460 (755)
.+.+ -|+.+-.-|.|.+.|....+..+.+. ....|+||.|-|.+...|+.+-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 3455 67778888999999877644444342 4578999999998889999999999999997631
Q ss_pred ----C---------------eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCC
Q 004410 461 ----C---------------QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 461 ----~---------------~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~ 521 (755)
+ .+..|......|..++|+|||++||+.+.||.++|||..+.+++.. .+.--+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~--------mkSYFG 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV--------MKSYFG 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH--------HHhhcc
Confidence 0 0112333456789999999999999999999999999998776532 333456
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec--------------------------
Q 004410 522 RITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS-------------------------- 575 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-------------------------- 575 (755)
.+.|++|+| |+++|++|+.|..|.||...+......+ .+|...|..++|.|
T Consensus 334 GLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARG--qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~ 410 (636)
T KOG2394|consen 334 GLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARG--QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFE 410 (636)
T ss_pred ceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEec--cccccceeeEeecccccccccccccccccccccchhcccc
Confidence 889999999 9999999999999999999887666666 88999999999982
Q ss_pred ---------CC-------------CEEEEEeCCCcEEEEEcCCCC
Q 004410 576 ---------DG-------------KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 576 ---------dg-------------~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++ -.|.+.+.|-.+.+||+....
T Consensus 411 ~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 411 IRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred cccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 01 136778899999999998665
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.9e-12 Score=143.90 Aligned_cols=233 Identities=14% Similarity=0.105 Sum_probs=155.7
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc---CCCcEEEEEccCCeeeeeeecCCCCCceeE
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG---EDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs---~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~ 333 (755)
..|.++|...... +.+..+...+...+|||||+.||..+ .+..|.+|++.+++...
T Consensus 179 ~~l~~~d~dg~~~--------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~------------- 237 (429)
T PRK03629 179 YELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ------------- 237 (429)
T ss_pred eeEEEEcCCCCCC--------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-------------
Confidence 3688888654321 23445677899999999999998754 23568888887664211
Q ss_pred EeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEE-eCCC--
Q 004410 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SADK-- 409 (755)
Q Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~-s~Dg-- 409 (755)
+..+.+| +..+.|+||| .|+.. +.++
T Consensus 238 -----------------------------------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 238 -----------------------------------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred -----------------------------------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCc
Confidence 1112222 3357899999 66544 4454
Q ss_pred cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC-C--cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEE
Q 004410 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D-g--~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la 486 (755)
.|++||+.+++......+...+....|+| +++.|+..+.+ + .|.++|+.++....+..........+|+|||++|+
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred EEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 48999999988776666666788999999 89988776654 4 45555777776655544445567789999999998
Q ss_pred EEeCC---CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc---EEEEECCcceeeEEEe
Q 004410 487 VGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL---VRVLCGENVVGKFKAS 560 (755)
Q Consensus 487 ~gs~d---g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~---I~iwd~~~~~~~~~~~ 560 (755)
..+.+ ..|.+||+.++.... +.. ........|+| |+++|+..+.++. +.+++..... ....
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~~-----Lt~-----~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l- 413 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQV-----LTD-----TFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTDGRF-KARL- 413 (429)
T ss_pred EEEccCCCceEEEEECCCCCeEE-----eCC-----CCCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCC-eEEC-
Confidence 86654 358889998876432 111 11234578999 8898988887765 5556653222 2222
Q ss_pred eeccCCceEEEEEec
Q 004410 561 AFRVAGSQMFATFTS 575 (755)
Q Consensus 561 ~~~~~~~v~~l~fsp 575 (755)
..+.+.+...+|+|
T Consensus 414 -~~~~~~~~~p~Wsp 427 (429)
T PRK03629 414 -PATDGQVKFPAWSP 427 (429)
T ss_pred -ccCCCCcCCcccCC
Confidence 34667788888886
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.53 E-value=6e-13 Score=131.83 Aligned_cols=205 Identities=14% Similarity=0.211 Sum_probs=165.3
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
...+.|.+|++|+..+|.+..+..|.||...... .....+++..|...|++|.|+|..+.|++|+.|..-+||...
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 4678889999999999999999999999876543 123456788999999999999999999999999999999873
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
.+.. -+|...+..|...++++
T Consensus 86 ~~~~-----------------------------------------------------------WkptlvLlRiNrAAt~V 106 (361)
T KOG1523|consen 86 SGGT-----------------------------------------------------------WKPTLVLLRINRAATCV 106 (361)
T ss_pred CCCe-----------------------------------------------------------eccceeEEEeccceeeE
Confidence 3321 13344556688899999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEE---E--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC-----C---
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRV---F--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-----R--- 460 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~---~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~-----~--- 460 (755)
.|+|.. .+++|+.-+.|.||-.+...---+ + .+...|+++.|+| ++-+|++|+.|++.||+..- .
T Consensus 107 ~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpa 185 (361)
T KOG1523|consen 107 KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPA 185 (361)
T ss_pred eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCC
Confidence 999998 999999999999998765543211 1 3678899999999 89999999999999999642 1
Q ss_pred ----------CeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCe
Q 004410 461 ----------CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 461 ----------~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~ 503 (755)
++++ .+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 186 p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 186 PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 1122 222456789999999999999999999999999987664
No 211
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.52 E-value=5.5e-12 Score=135.84 Aligned_cols=245 Identities=14% Similarity=0.208 Sum_probs=157.1
Q ss_pred cCcceeecCCCCeeEEee-CCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CCcEEEEEcc
Q 004410 237 RHGSATLKPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVI 314 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs-~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWdv~ 314 (755)
....++++|++++|++++ .++.|.+|++..... +.. .... ...+....|+|+|+|++|++++. ++.|.+|++.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~---~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTF---AAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEE---eeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 344589999999887764 588899999863211 111 1111 12234678999999999888764 7899999986
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
+...+.. .+..+. +......+
T Consensus 111 ~~g~~~~----------------------------------------------------------~~~~~~-~~~~~~~~ 131 (330)
T PRK11028 111 KDGIPVA----------------------------------------------------------PIQIIE-GLEGCHSA 131 (330)
T ss_pred CCCCCCC----------------------------------------------------------ceeecc-CCCcccEe
Confidence 4221100 001111 12235668
Q ss_pred EEcCCC-eE-EEEeCCCcEEEEeCCCCeEEE-------EEecCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCC--Ce
Q 004410 395 SWSKNG-FL-LSSSADKTVRLWQVGIDRCLR-------VFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR--CQ 462 (755)
Q Consensus 395 ~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~-------~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~--~~ 462 (755)
+++|++ ++ ++...++.|.+||+.+...+. ..........++|+| ++++++++.. +++|.+|++.. ++
T Consensus 132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 899998 55 455567999999997643221 112344567899999 8998887776 89999999973 32
Q ss_pred E--EE-eccC------CcceEEEEEccCCCeEEEEeC-CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 463 V--VD-YTDI------REIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 463 ~--~~-~~~~------~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
. +. .... ......+.++|+|++|+++.. ++.|.+|++.......... .... .......+.++| +
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~----~~~~-~~~~p~~~~~~~-d 284 (330)
T PRK11028 211 IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE----GHQP-TETQPRGFNIDH-S 284 (330)
T ss_pred EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe----EEEe-ccccCCceEECC-C
Confidence 2 21 1111 112346889999999999864 6889999986432111111 1111 113445789999 7
Q ss_pred CCEEEEEEC-CCcEEEEECCc
Q 004410 533 PSKVIVTSA-DSLVRVLCGEN 552 (755)
Q Consensus 533 ~~~l~s~s~-Dg~I~iwd~~~ 552 (755)
+++|+++.. +++|.+|+...
T Consensus 285 g~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 285 GKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCEEEEEEccCCcEEEEEEcC
Confidence 888877665 89999998653
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=4.1e-12 Score=127.72 Aligned_cols=295 Identities=13% Similarity=0.197 Sum_probs=187.9
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERL 319 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~ 319 (755)
++|++.-.-+|++..|-.|+||+.+.. ....+. ...+..|+||+|-|.+ .-|+.|+.. -|.+|.....-..
T Consensus 104 ~aWhqH~~~fava~nddvVriy~ksst--~pt~Lk-----s~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSST--CPTKLK-----SVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCCC--CCceec-----chhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 788886666788899999999985541 111111 1234679999999954 577888765 5999986432111
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
... + +.... ....+....|| ..|+.|+|.+|
T Consensus 176 ~r~---------~--------------------------~~~s~-------------~~~qvl~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 176 NRN---------I--------------------------RMMST-------------HHLQVLQDPGH-NPVTSMQWNED 206 (445)
T ss_pred ccc---------c--------------------------ccccc-------------cchhheeCCCC-ceeeEEEEcCC
Confidence 000 0 00000 00112333466 78999999999
Q ss_pred C-eEEEEe-CCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc-CCCeEEEeccCCcceEE
Q 004410 400 G-FLLSSS-ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQVVDYTDIREIVSA 475 (755)
Q Consensus 400 ~-~L~s~s-~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl-~~~~~~~~~~~~~~V~~ 475 (755)
| .|++++ .|..|.|||+.++.++... ...+.++-+.|+| |+++|++++-|+..++|.. ++.....+.-..+.|..
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 9 788777 5678999999999988776 4677899999999 9999999999999999954 44445566667779999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCC--CeEe---------eeeeEEecc-----cccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKD--NQLY---------QQNQICLQG-----KKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~--~~~~---------~~~~~~~~~-----~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.+|+|+|..|+..+. |.-++|.+.. .... ......++. ....-.+.+.+++|.| .+.++++.
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~ 363 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVI 363 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC-CCCEEEEE
Confidence 999999998876553 3444554431 1000 001111111 1122356789999999 78888876
Q ss_pred ECCC--------cEEEEECCcceee-EEEeeeccCCceEEEEEec---CCCEEEEEeCCCcEEEEEcC
Q 004410 540 SADS--------LVRVLCGENVVGK-FKASAFRVAGSQMFATFTS---DGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 540 s~Dg--------~I~iwd~~~~~~~-~~~~~~~~~~~v~~l~fsp---dg~~L~sgs~Dg~I~iWd~~ 595 (755)
-..+ .|.+||....... +..-..........++|+| +|.+|..+=..|.|.-|++.
T Consensus 364 fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 364 FKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 5543 3556775542211 1100011112234556655 57777777777888877764
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=9e-13 Score=146.80 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=137.0
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEe-CCCcEEE--E
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRI--W 456 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~D---g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~i--w 456 (755)
+..|...+...+|+|+| .|+.++.+ ..|++||+.+++........+....++|+| +++.|+.++ .+|.+.| |
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~ 277 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYVM 277 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEEEEE
Confidence 45577789999999999 77777654 369999999886544333334455789999 888887764 6786554 5
Q ss_pred EcCCCeEEEeccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
|+.++....+..+...+....|+|||+.|+..+ .+|...||++......... + . +.. ....|+| ++++
T Consensus 278 d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---l-~----~~~--~~~~~Sp-DG~~ 346 (429)
T PRK01742 278 GANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL---V-G----GRG--YSAQISA-DGKT 346 (429)
T ss_pred ECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---e-c----CCC--CCccCCC-CCCE
Confidence 777777777777777788999999999877655 5688888876532211110 1 1 111 3578999 8888
Q ss_pred EEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 536 VIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
|+..+.++ +.+||..+....... .. .....+.|+|||++|+.++.++.+.+|.+.
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~~lt--~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTEVLS--ST--FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeEEec--CC--CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 88877754 556898765433221 11 123567899999999999999999988864
No 214
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=4.2e-12 Score=125.99 Aligned_cols=282 Identities=16% Similarity=0.194 Sum_probs=191.1
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEE-EEcCCCcEEEEEccCCeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERL 319 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~La-Sgs~Dg~I~vWdv~~~~~~ 319 (755)
..|||+|+++|+.... ++.|.|..+-. ..|.+. --+.|.-+.|..|..+++ .+..|+.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq-------~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQ-------LHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhh-------HHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 6899999999998877 78888865322 111111 135688899998887654 4567889999998765432
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
..+......+..++|+|+
T Consensus 85 --------------------------------------------------------------ckIdeg~agls~~~WSPd 102 (447)
T KOG4497|consen 85 --------------------------------------------------------------CKIDEGQAGLSSISWSPD 102 (447)
T ss_pred --------------------------------------------------------------EEeccCCCcceeeeECCC
Confidence 223344567888999999
Q ss_pred C--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC---------------------------
Q 004410 400 G--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID--------------------------- 450 (755)
Q Consensus 400 ~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D--------------------------- 450 (755)
| .|.+..-|-.|.+|.+.+.++...--....+..++|+| ++++.+.++.-
T Consensus 103 grhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dl 181 (447)
T KOG4497|consen 103 GRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDL 181 (447)
T ss_pred cceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccc
Confidence 9 67778889999999999888766554455678899999 89888776532
Q ss_pred ---------CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeee-------------
Q 004410 451 ---------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN------------- 508 (755)
Q Consensus 451 ---------g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~------------- 508 (755)
..+.+||-.-.-.+......-.+..+.|+|.+++|++|+.|+.+++.+--+.+...++
T Consensus 182 tgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~ 261 (447)
T KOG4497|consen 182 TGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHL 261 (447)
T ss_pred cCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhh
Confidence 1233343221111112222356888999999999999999999988654222211000
Q ss_pred ----------------------------------------eEEeccc-----ccCCCCCeEEEEEcCCCCCEEEEEEC--
Q 004410 509 ----------------------------------------QICLQGK-----KKLPGKRITGFQFSPSDPSKVIVTSA-- 541 (755)
Q Consensus 509 ----------------------------------------~~~~~~~-----~~~~~~~I~~v~fsp~d~~~l~s~s~-- 541 (755)
...++.. +..+...+.-++|++ |..++++-..
T Consensus 262 ~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~ 340 (447)
T KOG4497|consen 262 LEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKY 340 (447)
T ss_pred hhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCC
Confidence 0000000 111233466789999 8787777644
Q ss_pred CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 542 DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
-+.+.+||+++...-.. .....+|....|.|....|+.+.....+++|......
T Consensus 341 PnalW~Wdlq~l~l~av---LiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 341 PNALWLWDLQNLKLHAV---LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred CceEEEEechhhhhhhh---hhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 36789999887543222 2345689999999999999888888899999876543
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=8.5e-12 Score=139.43 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=156.1
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC---CCcEEEEEccCCeeeeeeecCCCCCceeE
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~ 333 (755)
..|.++|..... .+.+..|...|.+.+|+|||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-------------- 239 (435)
T PRK05137 182 KRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-------------- 239 (435)
T ss_pred eEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--------------
Confidence 467777764322 2345678889999999999999988763 467999998766421
Q ss_pred EeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCCc-
Q 004410 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKT- 410 (755)
Q Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg~- 410 (755)
.+..+.+.+...+|+|+| .|+ +.+.++.
T Consensus 240 -------------------------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 240 -------------------------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred -------------------------------------------------EeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 112234456678999999 554 5566655
Q ss_pred -EEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CC--cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEE
Q 004410 411 -VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 411 -V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg--~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la 486 (755)
|++||+.+++......+........|+| +++.|+..+. +| .|++||+.++....+......+....|+|||+.|+
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEE
Confidence 7778998887766555666678899999 8888877664 33 68888988877666555555677789999999998
Q ss_pred EEeCC---CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC------CcEEEEECCcceeeE
Q 004410 487 VGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD------SLVRVLCGENVVGKF 557 (755)
Q Consensus 487 ~gs~d---g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D------g~I~iwd~~~~~~~~ 557 (755)
....+ ..|.+||+.++.... +. ....+..+.|+| ++++|+..+.+ ..+.+++.......
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~~~-----lt-----~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~- 417 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGERI-----LT-----SGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRNER- 417 (435)
T ss_pred EEEcCCCceEEEEEECCCCceEe-----cc-----CCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCCceE-
Confidence 87654 358888886654321 11 112466789999 77777665543 24667776543222
Q ss_pred EEeeeccCCceEEEEEec
Q 004410 558 KASAFRVAGSQMFATFTS 575 (755)
Q Consensus 558 ~~~~~~~~~~v~~l~fsp 575 (755)
. ....+.+...+|+|
T Consensus 418 ~---l~~~~~~~~p~Wsp 432 (435)
T PRK05137 418 E---VPTPGDASDPAWSP 432 (435)
T ss_pred E---ccCCCCccCcccCC
Confidence 1 11233455666765
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=2.2e-12 Score=128.73 Aligned_cols=285 Identities=19% Similarity=0.327 Sum_probs=181.5
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc------------ccEEEEEEecCCC--EEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YLA 300 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~------------~~V~~l~fspdg~--~La 300 (755)
.+-+.++.|..+|.+||+|..+|+|.++.-....+. .+....+++.|+ ..|..+.|.++++ .++
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 456778999999999999999999999986544331 112223344453 4789999998764 566
Q ss_pred EEcCCCcEEEEEccCCeeee-eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee-eeecCCceEEEeCCcceeccC
Q 004410 301 SGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS-LRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 378 (755)
..+.|.+|++|.+....... .+...... ....+..... ..+..+..+...+.+++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~-------------------~~~~~~~lr~p~~~~~~~~vea~prRv~---- 159 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEG-------------------PPGTITSLRLPVEGRHDLEVEASPRRVY---- 159 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccC-------------------CCCccceeeceeeccccceeeeeeeeec----
Confidence 67789999999987654322 11110000 0000000000 00111111111111111
Q ss_pred ccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCC-CeEEEEEe--------cCCcEEEEEEeeCCCCEEEEEeC
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI 449 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s-~~~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs~ 449 (755)
-.+|.--|.++.++.|+..+.+..|=.|.+|+++- .++..... ...-|++..|+|...+.|+-.+.
T Consensus 160 -----aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 160 -----ANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred -----cccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC
Confidence 14688899999999999555556788899999873 33333321 34568999999988899999999
Q ss_pred CCcEEEEEcCCCeEEE-----------------eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECC-CCeEeeeeeEE
Q 004410 450 DGKVRIWEVRRCQVVD-----------------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQLYQQNQIC 511 (755)
Q Consensus 450 Dg~V~iwdl~~~~~~~-----------------~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~-~~~~~~~~~~~ 511 (755)
.|+|++-|++...+-. +...-..|..+.|+++|+++++-.. -+|++||+. ..+.+.+.+++
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 9999999999543221 1112245888999999999988553 589999994 45555444432
Q ss_pred eccccc----CCCCC---eEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 512 LQGKKK----LPGKR---ITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 512 ~~~~~~----~~~~~---I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
-.-..+ ..... -..++|+. ++..+++|+..+.+++++..
T Consensus 314 ~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 314 EYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred HhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCC
Confidence 111110 01112 23578887 78899999999999999944
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.48 E-value=5e-11 Score=118.40 Aligned_cols=199 Identities=16% Similarity=0.246 Sum_probs=139.9
Q ss_pred CCCCEEEEEEcCCCeEEEEeCCCcEEEEeCC-CCeEEEEEe---cCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEEcCCC
Q 004410 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVG-IDRCLRVFS---HNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRRC 461 (755)
Q Consensus 387 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~-s~~~~~~~~---h~~~V~~i~fsp~d~~~l~s-gs~Dg~V~iwdl~~~ 461 (755)
-..+|.++.+.++. |+.. ..+.|+||... .-+.++.+. ....+.+++-+. +..+|+. |-.-|.|+|-|+...
T Consensus 93 f~~~I~~V~l~r~r-iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDR-IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCCe-EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhc
Confidence 35678899998875 3333 35789999877 445555553 233444444332 3334443 556699999999876
Q ss_pred eE---EEeccCCcceEEEEEccCCCeEEEEeCCCc-EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 462 QV---VDYTDIREIVSAVCYCPDGKGGIVGTMTGN-CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 462 ~~---~~~~~~~~~V~~v~~spdg~~la~gs~dg~-I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
.. .....|...|.|++.+-+|..+|+++..|+ |+|||..++.+++++. .......|++++|+| +..+|+
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A~iy~iaFSp-~~s~La 242 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRADIYCIAFSP-NSSWLA 242 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchheEEEEEeCC-CccEEE
Confidence 65 678899999999999999999999999998 8999999999987643 334557899999999 999999
Q ss_pred EEECCCcEEEEECCcceeeEE----------------E------eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 538 VTSADSLVRVLCGENVVGKFK----------------A------SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~~~~~~~----------------~------~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
+.+..|+++|+.+........ . ...-..+...-++|-.+-+.++..+.||.-+-+.+.
T Consensus 243 vsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred EEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 999999999998765321111 0 000113345556666665666666677776655554
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6e-12 Score=140.48 Aligned_cols=233 Identities=18% Similarity=0.190 Sum_probs=153.0
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC---CcEEEEEccCCeeeeeeecCCCCCceeE
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~ 333 (755)
..|.+||..... .+.+..|...+.+.+|+|||+.|+.++.+ ..|.+|++.+++...
T Consensus 184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~------------- 242 (433)
T PRK04922 184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL------------- 242 (433)
T ss_pred EEEEEECCCCCC--------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-------------
Confidence 468888865321 13355677789999999999999987643 469999987664211
Q ss_pred EeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCC--
Q 004410 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK-- 409 (755)
Q Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg-- 409 (755)
+..+.+....+.|+|+| .|+ +.+.++
T Consensus 243 --------------------------------------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 243 --------------------------------------------------VASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred --------------------------------------------------eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 11122233467899999 554 555555
Q ss_pred cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CCc--EEEEEcCCCeEEEeccCCcceEEEEEccCCCeEE
Q 004410 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGK--VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg~--V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la 486 (755)
.|++||+.+++......+.......+|+| +++.|+..+. +|. |+++|+.+++...+.........++|+|||+.|+
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred eEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 59999999988766555655667899999 8888877664 444 7777877776655443444456789999999998
Q ss_pred EEeCCC---cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC---CcEEEEECCcceeeEEEe
Q 004410 487 VGTMTG---NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD---SLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 487 ~gs~dg---~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D---g~I~iwd~~~~~~~~~~~ 560 (755)
..+.++ .|.+||+.++.... +. +........|+| ++++|+..+.+ +.|.+++..... ....
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~~-----Lt-----~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g~~-~~~l- 418 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVRT-----LT-----PGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTDGRV-RQRL- 418 (433)
T ss_pred EEECCCCceeEEEEECCCCCeEE-----CC-----CCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCCc-eEEc-
Confidence 876543 59999998876542 11 111234568999 78877766553 356667664322 1111
Q ss_pred eeccCCceEEEEEec
Q 004410 561 AFRVAGSQMFATFTS 575 (755)
Q Consensus 561 ~~~~~~~v~~l~fsp 575 (755)
..+.+.+..++|+|
T Consensus 419 -~~~~g~~~~p~wsp 432 (433)
T PRK04922 419 -VSADGEVREPAWSP 432 (433)
T ss_pred -ccCCCCCCCCccCC
Confidence 22345566667765
No 219
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=3.6e-11 Score=127.61 Aligned_cols=311 Identities=15% Similarity=0.176 Sum_probs=197.8
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEE-----cC-----CCcEE
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-----GE-----DGTVR 309 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSg-----s~-----Dg~I~ 309 (755)
..+++++|+++|.... +.|+|++.......+. -....+.++.|+|-|.||.|= .. .-.++
T Consensus 39 v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt---------~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLC---------VELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred eEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEE---------eccceeeeeeecccccccccccccccccCCCCCCCcee
Confidence 4788999998887654 5789998765432111 111268899999999999872 11 24578
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+|++.++.....+........+..|+.+..-.... ....+..+....++. +.+. -|..
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-----------------v~nev~f~~~~~f~~---~~~k--l~~~ 166 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-----------------VSNEVQFYDLGSFKT---IQHK--LSVS 166 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhhhh-----------------hcceEEEEecCCccc---eeee--eecc
Confidence 99999865544444333332344444333211110 111222222222211 1222 2577
Q ss_pred CEEEEEEcCCC---eEEE-----EeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeC--C-----
Q 004410 390 EVLDLSWSKNG---FLLS-----SSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSI--D----- 450 (755)
Q Consensus 390 ~V~~l~~s~~~---~L~s-----~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~--D----- 450 (755)
.|..+.++|.. .+++ .+.-..|+||.+.....-..+. ....=..+.|++....+|+.++. |
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~S 246 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNAS 246 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCcc
Confidence 89999999984 4443 3566789999876322221111 12222346777733334444432 2
Q ss_pred ----CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEE--EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 451 ----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV--GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 451 ----g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~--gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
.++++.++....++.-....++|.+++|+|+|+.+++ |-.--.+.|||++..-.. ....++-+
T Consensus 247 YYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~-----------df~egpRN 315 (566)
T KOG2315|consen 247 YYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF-----------DFPEGPRN 315 (566)
T ss_pred ccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE-----------eCCCCCcc
Confidence 4688888885556555566889999999999987766 566788999999865432 22456778
Q ss_pred EEEEcCCCCCEEEEEECC---CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC------CCcEEEEEcC
Q 004410 525 GFQFSPSDPSKVIVTSAD---SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE------DSNIYIWNYS 595 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~------Dg~I~iWd~~ 595 (755)
++-|+| .+++|+.++.+ |.|-|||..+.+..... ....-+-+.|+|||++|+|+.. |+.++||++.
T Consensus 316 ~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~----~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 316 TAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKF----KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ceEECC-CCCEEEEeecCCCCCceEEEeccchhhcccc----ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 899999 88888888764 78999999884433332 2334566899999999999875 7899999997
Q ss_pred CCC
Q 004410 596 NQD 598 (755)
Q Consensus 596 ~~~ 598 (755)
...
T Consensus 391 G~~ 393 (566)
T KOG2315|consen 391 GSL 393 (566)
T ss_pred Cce
Confidence 654
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.45 E-value=2.7e-12 Score=134.98 Aligned_cols=200 Identities=19% Similarity=0.313 Sum_probs=138.6
Q ss_pred ecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeee
Q 004410 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDG 321 (755)
Q Consensus 243 ~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~ 321 (755)
-.|++--|+.|-..|.|.+.+... .++..+.... ..-.+..|+|++|-|.+ ..++.+-.+|.+.++|..-.
T Consensus 181 a~~~g~dllIGf~tGqvq~idp~~--~~~sklfne~-r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~----- 252 (636)
T KOG2394|consen 181 ATPKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNEE-RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV----- 252 (636)
T ss_pred cCCCCcceEEeeccCceEEecchh--hHHHHhhhhc-ccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----
Confidence 346777788888889998887554 2233322221 11234789999999944 45556677999999987211
Q ss_pred eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-
Q 004410 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400 (755)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~- 400 (755)
.....+....+. ....+.+... .......|+..+.--.+.|...+|+|||
T Consensus 253 --~~~t~p~~~~~k---~~~~f~i~t~------------------------ksk~~rNPv~~w~~~~g~in~f~FS~DG~ 303 (636)
T KOG2394|consen 253 --CGATAPSYQALK---DGDQFAILTS------------------------KSKKTRNPVARWHIGEGSINEFAFSPDGK 303 (636)
T ss_pred --ccCCCCcccccC---CCCeeEEeee------------------------eccccCCccceeEeccccccceeEcCCCc
Confidence 111111100000 0000000000 0001123455555556689999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY 478 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~ 478 (755)
+||+.+.||.+||+|..+.+++..++ .-+...|++|+| |++|+++|+.|-.|.||.+..++++ .-.+|+..|..|+|
T Consensus 304 ~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 304 YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAF 382 (636)
T ss_pred eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEee
Confidence 99999999999999999988877764 567899999999 9999999999999999999999999 56789999999999
Q ss_pred cc
Q 004410 479 CP 480 (755)
Q Consensus 479 sp 480 (755)
.|
T Consensus 383 Dp 384 (636)
T KOG2394|consen 383 DP 384 (636)
T ss_pred cc
Confidence 87
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.44 E-value=3.7e-13 Score=139.05 Aligned_cols=229 Identities=13% Similarity=0.176 Sum_probs=186.8
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
.-..+.++.+|++|+.|+..|.|-.+|+.++....++..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----------------------------------------- 169 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----------------------------------------- 169 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-----------------------------------------
Confidence 345789999999999999999999999998876544431
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~ 445 (755)
...|.++.|-.+..+++....+.++|||- .|..+..+.....|..+.|.| -.-+|+
T Consensus 170 ----------------------~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~~v~rLeFLP-yHfLL~ 225 (545)
T KOG1272|consen 170 ----------------------METVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHIRVARLEFLP-YHFLLV 225 (545)
T ss_pred ----------------------hhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcCchhhhcccc-hhheee
Confidence 24577888888776666677899999994 566777777778899999999 788889
Q ss_pred EEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 446 SGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 446 sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
+++..|.++.-|+.+++++ .+....+.+..++-+|-.-.+-+|...|+|.+|.......+.. ...|.++|.
T Consensus 226 ~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK--------iLcH~g~V~ 297 (545)
T KOG1272|consen 226 AASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK--------ILCHRGPVS 297 (545)
T ss_pred ecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH--------HHhcCCCcc
Confidence 9999999999999999988 5666677888999999888999999999999999988776532 445788999
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
++++.+ ++.++++++.|..++|||+....+..... ...+...++||..| +++.+....|.||.
T Consensus 298 siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~---tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 298 SIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYR---TPHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred eEEECC-CCcEEeecccccceeEeeeccccccceee---cCCCcccccccccc--ceeeecCCeeeeeh
Confidence 999999 99999999999999999999876544432 24466778888665 44455556899996
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=5.1e-11 Score=132.51 Aligned_cols=198 Identities=14% Similarity=0.132 Sum_probs=138.4
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEE-eCCC--cEEEEE
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSS---ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDG--KVRIWE 457 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s---~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sg-s~Dg--~V~iwd 457 (755)
..+...+...+|+||| .|+..+ .+..|++||+.+++..........+..+.|+| |++.|+.. +.+| .|++||
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEEEEE
Confidence 3456678999999999 666554 24579999999887655544455566789999 88877754 4455 599999
Q ss_pred cCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC-Cc--EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-GN--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 458 l~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g~--I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
+.+++...+......+....|+|||+.|+..+.+ |. |+++|+.++..... . ..........|+| +++
T Consensus 274 ~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---t------~~~~~~~~~~~Sp-DG~ 343 (429)
T PRK03629 274 LASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---T------WEGSQNQDADVSS-DGK 343 (429)
T ss_pred CCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---e------cCCCCccCEEECC-CCC
Confidence 9998888777666778899999999999877754 44 55557766644321 1 1223456788999 777
Q ss_pred EEEEEECC---CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc---EEEEEcCCC
Q 004410 535 KVIVTSAD---SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN---IYIWNYSNQ 597 (755)
Q Consensus 535 ~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~---I~iWd~~~~ 597 (755)
+|+..+.+ ..|.+||..+....... .........|+|||++|+.++.++. +++++++..
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt----~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQVLT----DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEeC----CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 77766543 35788887665332211 1123346789999999999998865 677777544
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2e-11 Score=135.95 Aligned_cols=218 Identities=17% Similarity=0.149 Sum_probs=137.3
Q ss_pred eecccccEEEEEEecCCCEEEEEcCC---CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------------------------------ 234 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------------------------------ 234 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE------------------------------------
Confidence 45677889999999999999887643 359999987765311
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCCcEEEE--eCCCCeEEEEEecCCcEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKTVRLW--QVGIDRCLRVFSHNNYVT 432 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg~V~iW--dl~s~~~~~~~~h~~~V~ 432 (755)
+....+.+....|+||| .|+ +.+.++...|| |+.++...+...+...+.
T Consensus 235 ---------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~ 287 (427)
T PRK02889 235 ---------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDT 287 (427)
T ss_pred ---------------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCc
Confidence 11122334578999999 555 56778776666 455555443334555667
Q ss_pred EEEEeeCCCCEEEEEeC-CCcEEEEE--cCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCC---cEEEEECCCCeEee
Q 004410 433 SVAFNPVDDNYFISGSI-DGKVRIWE--VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKDNQLYQ 506 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~-Dg~V~iwd--l~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg---~I~iwD~~~~~~~~ 506 (755)
...|+| |++.|+..+. +|...||. +.++...............+|+|||++|+..+.++ .|.+||+.++....
T Consensus 288 ~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 288 EPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred CeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 889999 8888776554 45656665 45554443332333345688999999999877654 59999998876532
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC-c--EEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS-L--VRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg-~--I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
. . .........|+| +++.|+.++.++ . +.+.+... ...... ..+.+.+...+|+|
T Consensus 367 l-----t-----~~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~~g-~~~~~l--~~~~g~~~~p~wsp 424 (427)
T PRK02889 367 L-----T-----DTTRDESPSFAP-NGRYILYATQQGGRSVLAAVSSDG-RIKQRL--SVQGGDVREPSWGP 424 (427)
T ss_pred c-----c-----CCCCccCceECC-CCCEEEEEEecCCCEEEEEEECCC-CceEEe--ecCCCCCCCCccCC
Confidence 1 1 112235679999 777777666543 3 33444422 111111 23445566677766
No 224
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=3.4e-11 Score=121.82 Aligned_cols=195 Identities=11% Similarity=0.149 Sum_probs=152.3
Q ss_pred CEEEEEEcCCCeEEEEeCC--CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE--
Q 004410 390 EVLDLSWSKNGFLLSSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-- 465 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~D--g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-- 465 (755)
.|.-+-|+.+ +++..+.+ +.+++++.+.+..+..+.....|.++.++. +.|+++-. ..|+|||+++.+++.
T Consensus 48 ~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI 122 (391)
T KOG2110|consen 48 SIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTI 122 (391)
T ss_pred EEEEeecccc-eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhh
Confidence 4555666654 44444433 559999999999999998999999999975 44555443 449999999998874
Q ss_pred --eccCCcceEEEEEccCCCeEEEE--eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 466 --YTDIREIVSAVCYCPDGKGGIVG--TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 466 --~~~~~~~V~~v~~spdg~~la~g--s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
+..+...+.++++++.+.+++.- ...|.|.+||+.+-+.... ...|.+.+.+++|++ +|.+||+++.
T Consensus 123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~--------I~aH~~~lAalafs~-~G~llATASe 193 (391)
T KOG2110|consen 123 ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT--------INAHKGPLAALAFSP-DGTLLATASE 193 (391)
T ss_pred hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE--------EEecCCceeEEEECC-CCCEEEEecc
Confidence 22445567777777788888873 3478999999998776643 335889999999999 9999999999
Q ss_pred CCc-EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 542 DSL-VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 542 Dg~-I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.|+ |||+...+....+.+..--....|.+++|+|++++|++.|..++|+||.++...
T Consensus 194 KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 194 KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 987 689999887766665333345678999999999999999999999999998764
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=6.9e-13 Score=131.49 Aligned_cols=189 Identities=15% Similarity=0.264 Sum_probs=136.0
Q ss_pred CCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCC-CEEEEEeCCCcEEEEEcCCCeEE
Q 004410 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD-NYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 389 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~-~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
..|.-+.|..+. .|.....|+.|.+|++...+-...+. ....+..+.|+| ++ .+|.+...|-.|.+|.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEeccceeE
Confidence 345667888887 45556788899999999888777774 778899999999 77 56677778999999999999888
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
.+...+..+..++|+|||++.+..+.-.....+++...+.- .+.++.+...-..+++.|+| |+..++
T Consensus 128 ~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W-----~ll~~f~~dT~DltgieWsP-dg~~la------- 194 (447)
T KOG4497|consen 128 LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW-----ILLKEFKLDTIDLTGIEWSP-DGNWLA------- 194 (447)
T ss_pred EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH-----HHHHhcCCCcccccCceECC-CCcEEE-------
Confidence 77777778899999999999999886533222332211110 12223444556789999999 766665
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
|||.--....+. ....-.+..++|+|.+++|+.|+.|+.++|-|--+
T Consensus 195 --Vwd~~Leykv~a---Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 195 --VWDNVLEYKVYA---YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred --Eecchhhheeee---eeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 455221111111 22334678899999999999999999999876544
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=5.3e-11 Score=133.05 Aligned_cols=202 Identities=17% Similarity=0.179 Sum_probs=143.8
Q ss_pred eEecCCCCCEEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCc--EE
Q 004410 382 HEFQGHSSEVLDLSWSKNG-FLLSSSA---DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGK--VR 454 (755)
Q Consensus 382 ~~~~gh~~~V~~l~~s~~~-~L~s~s~---Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~--V~ 454 (755)
..+..|...+...+|+||| .|+..+. +..|++||+.+++......+.+.+....|+| +++.|+ +.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceEE
Confidence 3445677889999999999 7776653 4689999999988765555677788999999 887664 5566655 78
Q ss_pred EEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC-CC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 455 iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
+||+.+++...+..+........|+|||+.|+..+. +| .|++||+.++..... . .....+....|+|
T Consensus 274 ~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l---t------~~~~~~~~~~~Sp- 343 (435)
T PRK05137 274 TMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI---S------FGGGRYSTPVWSP- 343 (435)
T ss_pred EEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe---e------cCCCcccCeEECC-
Confidence 889999888877777777788999999999988764 33 588889877654321 0 1123456788999
Q ss_pred CCCEEEEEECC---CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC------CcEEEEEcCCCC
Q 004410 532 DPSKVIVTSAD---SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED------SNIYIWNYSNQD 598 (755)
Q Consensus 532 d~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D------g~I~iWd~~~~~ 598 (755)
+++.|+....+ ..|.+||........ ......+..+.|+|||++|+..+.+ ..|+++++..+.
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~~~~----lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSGERI----LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEe----ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 77877776543 357778865432221 1122346778999999998876553 257778876543
No 227
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.40 E-value=2.8e-10 Score=119.49 Aligned_cols=315 Identities=15% Similarity=0.202 Sum_probs=204.1
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC------------
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED------------ 305 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D------------ 305 (755)
+..+.+||.|.+|++....| |.+|......+ +..+ -| ..|.-+.|+|.++||.|=+..
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~-l~~~-------~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAG-VECWGGPSKAK-LVRF-------RH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred hhheeecCcchheehhhccc-eEEccccchhh-eeee-------ec-CCceecccCcccceeeeeccCCccChhhccCCc
Confidence 44589999999999877765 89998664442 2211 12 358899999999999996543
Q ss_pred ---CcEEEEEccCCeeeeeeecCCCC--Cc-eeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCc
Q 004410 306 ---GTVRVWKVIEHERLDGFDVQDTD--PS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (755)
Q Consensus 306 ---g~I~vWdv~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (755)
..+.|||+.++..+..+...... .. .+.|+.++.-.... ....+.+... ...+...
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-----------------v~~sl~i~e~-t~n~~~~ 166 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-----------------VGSSLYIHEI-TDNIEEH 166 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-----------------ccCeEEEEec-CCccccC
Confidence 35999999999988887765443 11 33333332211111 0111111111 1112223
Q ss_pred cceEecCCCCCEEEEEEcCCC---eEEE-----EeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEe--
Q 004410 380 PLHEFQGHSSEVLDLSWSKNG---FLLS-----SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS-- 448 (755)
Q Consensus 380 ~~~~~~gh~~~V~~l~~s~~~---~L~s-----~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs-- 448 (755)
|.+.+. ...|....|+|.+ .|+. .+.++++++|.+..+..+.+-. ....=..+.|++ .+++++.--
T Consensus 167 p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t 243 (561)
T COG5354 167 PFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMT 243 (561)
T ss_pred chhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEE
Confidence 333333 3568888899874 4443 4578899999998777665543 222234567777 666654421
Q ss_pred ---------CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEE--eCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 449 ---------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG--TMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 449 ---------~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~g--s~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
....++|+++....+....+..++|...+|.|.++.+++. -..-.+.++|++++ +...
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~---------- 312 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY---------- 312 (561)
T ss_pred eeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe----------
Confidence 1246889998866655444778999999999998887764 47888999999987 3321
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECC---CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe------CCCc
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSAD---SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS------EDSN 588 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs------~Dg~ 588 (755)
.....-+.+.|+| ..+++++++-| |.|-+||.......... . ......-+.|+|||+++.+.. .|..
T Consensus 313 ~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~--~-~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~ 388 (561)
T COG5354 313 FPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGA--F-NGLNTSYCDWSPDGQFYDTDTTSEKLRVDNS 388 (561)
T ss_pred cCCcccccccccC-cccEEEEecCCccccceEEeccCCceEEEEE--e-ecCCceEeeccCCceEEEecCCCcccccCcc
Confidence 1233446678999 88888887765 67999997764433322 1 223345567999999998875 4889
Q ss_pred EEEEEcCCCC
Q 004410 589 IYIWNYSNQD 598 (755)
Q Consensus 589 I~iWd~~~~~ 598 (755)
|.|||+....
T Consensus 389 i~l~~v~g~~ 398 (561)
T COG5354 389 IKLWDVYGAK 398 (561)
T ss_pred eEEEEecCch
Confidence 9999997654
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=6.4e-11 Score=131.96 Aligned_cols=204 Identities=17% Similarity=0.148 Sum_probs=139.4
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC---CcEEEEEccCCeeeeeeecCCCCCceeE
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~ 333 (755)
..|.+++..... .+.+..+...+...+|+|||++||.+..+ ..|++|++.+++...
T Consensus 170 ~~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~------------- 228 (417)
T TIGR02800 170 YELQVADYDGAN--------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK------------- 228 (417)
T ss_pred ceEEEEcCCCCC--------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-------------
Confidence 356677754221 13455567789999999999999987654 479999987664211
Q ss_pred EeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCC--
Q 004410 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK-- 409 (755)
Q Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg-- 409 (755)
+..+...+..++|+|++ .|+ +.+.++
T Consensus 229 --------------------------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 229 --------------------------------------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred --------------------------------------------------eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 11233445568899998 554 444444
Q ss_pred cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC-C--cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEE
Q 004410 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D-g--~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la 486 (755)
.|++||+.+++......+........|+| +++.|+..+.. + .|+++|+.+++...+......+..+.|+|+|++|+
T Consensus 259 ~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred cEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence 59999998887665555555566789999 88887766543 3 58888988887766665666778899999999999
Q ss_pred EEeCCC---cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 487 VGTMTG---NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 487 ~gs~dg---~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.++.++ .|.+||+.++.... +.. ........|+| ++++|+..+.++
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~~~-----l~~-----~~~~~~p~~sp-dg~~l~~~~~~~ 386 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGERV-----LTD-----TGLDESPSFAP-NGRMILYATTRG 386 (417)
T ss_pred EEEccCCceEEEEEeCCCCCeEE-----ccC-----CCCCCCceECC-CCCEEEEEEeCC
Confidence 988776 78999998765432 111 11233458999 777777666554
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.38 E-value=6.8e-10 Score=120.15 Aligned_cols=275 Identities=17% Similarity=0.187 Sum_probs=171.7
Q ss_pred eEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCC
Q 004410 250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329 (755)
Q Consensus 250 lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~ 329 (755)
+++-..++.|.|.|..+.. ...++......-..+.|+|||+++++++.||.|.++|+.+++.+.++..
T Consensus 9 ~V~~~~~~~v~viD~~t~~-------~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----- 76 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNK-------VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----- 76 (369)
T ss_dssp EEEEGGGTEEEEEETTT-S-------EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------
T ss_pred EEEecCCCEEEEEECCCCe-------EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----
Confidence 3456678999999976532 2223433333334577999999999999999999999999886655432
Q ss_pred ceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEE-eC
Q 004410 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SA 407 (755)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~-s~ 407 (755)
......++++++| +++++ ..
T Consensus 77 ----------------------------------------------------------G~~~~~i~~s~DG~~~~v~n~~ 98 (369)
T PF02239_consen 77 ----------------------------------------------------------GGNPRGIAVSPDGKYVYVANYE 98 (369)
T ss_dssp ----------------------------------------------------------SSEEEEEEE--TTTEEEEEEEE
T ss_pred ----------------------------------------------------------CCCcceEEEcCCCCEEEEEecC
Confidence 1235679999999 55544 57
Q ss_pred CCcEEEEeCCCCeEEEEEe--------cCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCCCeE--EEeccCCcceEEE
Q 004410 408 DKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQV--VDYTDIREIVSAV 476 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~~~~--~~~~~~~~~V~~v 476 (755)
.+.|.++|.++.+.++.+. ....+..|..+| ....++..-. -+.|.+.|...... .............
T Consensus 99 ~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 99 PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred CCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 8999999999999998874 234678888888 6665555544 48888889776532 2445556677889
Q ss_pred EEccCCCeEEEE-eCCCcEEEEECCCCeEeeeeeE-------------------------------Eecccc--------
Q 004410 477 CYCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQI-------------------------------CLQGKK-------- 516 (755)
Q Consensus 477 ~~spdg~~la~g-s~dg~I~iwD~~~~~~~~~~~~-------------------------------~~~~~~-------- 516 (755)
.|+|++++++++ .....|-++|+.++++...... ...+..
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred ccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhh
Confidence 999999998775 4566788999988776543210 000000
Q ss_pred --------cCCCCCeEEEEEcCCCCCEEEEE----ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 517 --------KLPGKRITGFQFSPSDPSKVIVT----SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 517 --------~~~~~~I~~v~fsp~d~~~l~s~----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
...+.. .-+..+| +++++++. ...+.|.|+|..+........ ......+..+.|++||+++..+.
T Consensus 258 ~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~-~~~~~~~~h~ef~~dG~~v~vS~ 334 (369)
T PF02239_consen 258 AWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT-PGPGKRVVHMEFNPDGKEVWVSV 334 (369)
T ss_dssp BTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH-HHHT--EEEEEE-TTSSEEEEEE
T ss_pred cCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEe-ccCCCcEeccEECCCCCEEEEEE
Confidence 001112 3456688 88888887 445899999999874433321 11223488999999999876655
Q ss_pred CC--CcEEEEEcCCCC
Q 004410 585 ED--SNIYIWNYSNQD 598 (755)
Q Consensus 585 ~D--g~I~iWd~~~~~ 598 (755)
.+ +.|.|||..+.+
T Consensus 335 ~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 335 WDGNGAIVVYDAKTLK 350 (369)
T ss_dssp E--TTEEEEEETTTTE
T ss_pred ecCCCEEEEEECCCcE
Confidence 44 369999999886
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=3.5e-10 Score=112.53 Aligned_cols=179 Identities=12% Similarity=0.188 Sum_probs=133.6
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-CeEEE---eccCCcceEEEEEccCCCe
Q 004410 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVD---YTDIREIVSAVCYCPDGKG 484 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~~~~~---~~~~~~~V~~v~~spdg~~ 484 (755)
..|.|||-...+++..+....+|.++.+.+ +.+++. ..++|.||...+ -+.+. .........+++-+.+-..
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 569999988899999999999999999976 344443 478999999884 33332 2222223333332223344
Q ss_pred EEE-EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc-EEEEECCcceeeEEEeee
Q 004410 485 GIV-GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL-VRVLCGENVVGKFKASAF 562 (755)
Q Consensus 485 la~-gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~-I~iwd~~~~~~~~~~~~~ 562 (755)
||. |-.-|.|+|-|+...+.-.. .....|...|.+++.+- +|.++|+++..|+ |||||..+.........-
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p------~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAP------SIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCc------eEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence 444 56679999999987654211 12456889999999999 9999999999986 799999887666655434
Q ss_pred ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 563 RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 563 ~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.....|.+++|||++.+|+++|+-|+|+|+.+....
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 456789999999999999999999999999998754
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.1e-10 Score=130.30 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=142.4
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCC--cE
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDG--KV 453 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~D---g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg--~V 453 (755)
...+..|...+...+|+|++ .|+..+.+ ..|++||+.+++............++.|+| +++.|+ +.+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCceE
Confidence 44566677889999999999 77777643 469999999887765544555666889999 887664 556665 59
Q ss_pred EEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC-CCc--EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 454 RIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGN--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg~--I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
++||+.+++...+..+.......+|+|||+.|+..+. +|. |+++|+.++..... .. ........+|+|
T Consensus 275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l---t~------~g~~~~~~~~Sp 345 (433)
T PRK04922 275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL---TF------QGNYNARASVSP 345 (433)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---ec------CCCCccCEEECC
Confidence 9999999988777666666678999999999888764 444 67777776654321 11 123344689999
Q ss_pred CCCCEEEEEECCC---cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC---CcEEEEEcCCC
Q 004410 531 SDPSKVIVTSADS---LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED---SNIYIWNYSNQ 597 (755)
Q Consensus 531 ~d~~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D---g~I~iWd~~~~ 597 (755)
++++|+..+.++ .|.+||..+..... ..+........|+|||++|+..+.+ +.|+++++..+
T Consensus 346 -DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~----Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 346 -DGKKIAMVHGSGGQYRIAVMDLSTGSVRT----LTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred -CCCEEEEEECCCCceeEEEEECCCCCeEE----CCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 788877765443 58899986644331 1222244567999999998877764 45888887543
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=6.9e-11 Score=116.29 Aligned_cols=112 Identities=19% Similarity=0.425 Sum_probs=90.8
Q ss_pred CCCEEEEEEcCCC-eEE--EEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEEcCCC
Q 004410 388 SSEVLDLSWSKNG-FLL--SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRC 461 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~--s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D---g~V~iwdl~~~ 461 (755)
.++|.+++|+|++ .|+ .|..++.|.+||++ ++.+..+. ...+..|.|+| +|++|++++.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 4579999999999 543 45578899999996 66666664 56788999999 99999998754 66999999998
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeC------CCcEEEEECCCCe
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQ 503 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~------dg~I~iwD~~~~~ 503 (755)
+.+....+. .++.++|+|||++|++++. |+.++||+.....
T Consensus 136 ~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 136 KKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 888666554 4789999999999999875 6789999986543
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=9.2e-11 Score=119.49 Aligned_cols=203 Identities=10% Similarity=0.080 Sum_probs=157.5
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCe----EEEEEecCCcEEEEEEeeCCCCEEEEEeCC--CcEEEEEcC
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR----CLRVFSHNNYVTSVAFNPVDDNYFISGSID--GKVRIWEVR 459 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~----~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D--g~V~iwdl~ 459 (755)
.....|..++.. ++.|++|-.+|.+.+|....+. .+..+.....+..+.-++.+..++++|+.. ..+.|||+.
T Consensus 103 l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 103 LGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 345566666654 4588899999999999987432 334444556677788788677788889999 889999999
Q ss_pred CCeEEEe--------cc--CCcceEEEEEccC--CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 460 RCQVVDY--------TD--IREIVSAVCYCPD--GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 460 ~~~~~~~--------~~--~~~~V~~v~~spd--g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
..+.+.. .+ ..-.++.+.|-+. ...||+++.-+.+++||++.++... .+ .......|+++.
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV-~~------fd~~E~~is~~~ 254 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV-AQ------FDFLENPISSTG 254 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce-eE------eccccCcceeee
Confidence 8855421 11 1235788999997 8899999999999999999665321 11 223467899999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..| ++++|++|..-+.+..+|++.....-.. ..+..+.|.++..+|.+++|+++|-|..|+|+|+.+.+
T Consensus 255 l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 255 LTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCG-LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred ecC-CCcEEEEecccchhheecccCceeeccc-cCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 999 9999999999999999999875433321 25678999999999999999999999999999999855
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=2.5e-10 Score=127.14 Aligned_cols=196 Identities=16% Similarity=0.180 Sum_probs=132.4
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCcEEEE--
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIW-- 456 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~D---g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~V~iw-- 456 (755)
+..+...+...+|+|+| .|+..+.+ ..|.+||+.+++........+.+.+..|+| +++.|+ +.+.+|...||
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceEEEE
Confidence 34566778899999999 77766643 359999999988765544556677899999 887775 56778775555
Q ss_pred EcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC-CCcEEEEE--CCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYD--IKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD--~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
|+..+....+..+........|+|||+.|+..+. +|...+|. +.++.... +.. ........+|+| ++
T Consensus 270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~---lt~------~g~~~~~~~~Sp-DG 339 (427)
T PRK02889 270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR---VTF------TGSYNTSPRISP-DG 339 (427)
T ss_pred ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE---Eec------CCCCcCceEECC-CC
Confidence 5556665566555556678899999999887664 45655664 44443321 111 112334578999 88
Q ss_pred CEEEEEECCC---cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC---cEEEEEc
Q 004410 534 SKVIVTSADS---LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS---NIYIWNY 594 (755)
Q Consensus 534 ~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg---~I~iWd~ 594 (755)
++|+..+.++ .|.+||..+....... .......+.|+|||++|+.++.++ .+++.++
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt----~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTALT----DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEcc----CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 8888776654 5899998765433221 222346789999999998887654 2455555
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.2e-10 Score=118.71 Aligned_cols=247 Identities=15% Similarity=0.196 Sum_probs=170.3
Q ss_pred ccCcceeecCCCC--eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 236 DRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 236 ~~~~~~~~spdg~--~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
+++..++|.-+++ .+.....+..+..+.+..... ...+..........++|..++.. || .|++|-.+|.+.+|.+
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~-~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEI-SSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcc-ccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence 4455566655554 333332444455554432221 11111122344556778777775 33 6788889999999998
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
..+... ..++..+..+ ..+..
T Consensus 133 k~~d~h----------------------------------------------------------ss~l~~la~g-~g~~~ 153 (412)
T KOG3881|consen 133 KSGDLH----------------------------------------------------------SSKLIKLATG-PGLYD 153 (412)
T ss_pred cCCccc----------------------------------------------------------cccceeeecC-Cceee
Confidence 755321 0111112222 33444
Q ss_pred EEEcCCC--eEEEEeCC--CcEEEEeCCCCeEEEEEe----------cCCcEEEEEEeeCC--CCEEEEEeCCCcEEEEE
Q 004410 394 LSWSKNG--FLLSSSAD--KTVRLWQVGIDRCLRVFS----------HNNYVTSVAFNPVD--DNYFISGSIDGKVRIWE 457 (755)
Q Consensus 394 l~~s~~~--~L~s~s~D--g~V~iWdl~s~~~~~~~~----------h~~~V~~i~fsp~d--~~~l~sgs~Dg~V~iwd 457 (755)
|.-++.. .+++|+.. ..+.|||+.+.+.+..-. -.-+++++.|.+ . ...|++++.-+.||+||
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YD 232 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYD 232 (412)
T ss_pred eccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEec
Confidence 4445444 66779988 889999998884443321 345688999998 6 78899999999999999
Q ss_pred cCCCe--EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 458 VRRCQ--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 458 l~~~~--~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
.+.++ +..+.-...+++++...|+|+.|++|...|.+..||++.+++... ..+.-.+.|.++..+| ...+
T Consensus 233 t~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~-------~~kg~tGsirsih~hp-~~~~ 304 (412)
T KOG3881|consen 233 TRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC-------GLKGITGSIRSIHCHP-THPV 304 (412)
T ss_pred CcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc-------ccCCccCCcceEEEcC-CCce
Confidence 98654 335666788999999999999999999999999999999987532 1334567899999999 8899
Q ss_pred EEEEECCCcEEEEECCcc
Q 004410 536 VIVTSADSLVRVLCGENV 553 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~ 553 (755)
+++++-|..|||+|..+.
T Consensus 305 las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 305 LASCGLDRYVRIHDIKTR 322 (412)
T ss_pred EEeeccceeEEEeecccc
Confidence 999999999999998873
No 236
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.34 E-value=2.9e-12 Score=132.52 Aligned_cols=265 Identities=14% Similarity=0.145 Sum_probs=199.8
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
+.++.+|++|+.|+.-|.|-.+|..+...... +. -...|.++.|-.+.+++|++- ...+.|||-. |..
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E-------i~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtE-- 202 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE-------IN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTE-- 202 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeee-------ee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcE--
Confidence 67889999999999999999999876543221 21 235688999998999998875 4678999842 221
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
++.+..| ..|..|.|-|..
T Consensus 203 ------------------------------------------------------------lHClk~~-~~v~rLeFLPyH 221 (545)
T KOG1272|consen 203 ------------------------------------------------------------LHCLKRH-IRVARLEFLPYH 221 (545)
T ss_pred ------------------------------------------------------------Eeehhhc-Cchhhhcccchh
Confidence 3333333 567889999988
Q ss_pred -eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEE
Q 004410 401 -FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVC 477 (755)
Q Consensus 401 -~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~ 477 (755)
+|++++..|.++--|+.+|+.+..+. ..+.+..+.-+| -+..+-+|...|+|.+|.....+.+ .+..|.++|.+|+
T Consensus 222 fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siA 300 (545)
T KOG1272|consen 222 FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIA 300 (545)
T ss_pred heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEE
Confidence 88889999999999999999998885 678888999999 7788999999999999999887765 7888999999999
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc---e
Q 004410 478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV---V 554 (755)
Q Consensus 478 ~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~---~ 554 (755)
+.++|.++++.+.|..|+|||+++...+.... .......+++|. +-+++.+....|.||...-. .
T Consensus 301 v~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~---------tp~~a~~ls~Sq---kglLA~~~G~~v~iw~d~~~~s~~ 368 (545)
T KOG1272|consen 301 VDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR---------TPHPASNLSLSQ---KGLLALSYGDHVQIWKDALKGSGH 368 (545)
T ss_pred ECCCCcEEeecccccceeEeeeccccccceee---------cCCCcccccccc---ccceeeecCCeeeeehhhhcCCCC
Confidence 99999999999999999999999876433211 123456677765 45666677778999963321 2
Q ss_pred eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 555 GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 555 ~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
...........+.|..+.|.|-...|-.|..-|.-.|
T Consensus 369 ~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 369 GETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred CCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 2222222334568899999997777766655554333
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.33 E-value=1.2e-10 Score=114.67 Aligned_cols=151 Identities=21% Similarity=0.436 Sum_probs=108.0
Q ss_pred eeecCCCCeeEEeeC----------CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEE--cCCCcE
Q 004410 241 ATLKPGDHELTLGQR----------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG--GEDGTV 308 (755)
Q Consensus 241 ~~~spdg~~lasgs~----------dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSg--s~Dg~I 308 (755)
+.|+|+|.+|+.-.. -+...+|.++........+. ..+.++|.+++|+|+|+.||+. ..++.|
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-----l~~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-----LKKEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-----ccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence 789999997775332 23455665543322222111 1245679999999999987654 456799
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.+||+. ++. +..+ +.
T Consensus 86 ~lyd~~-~~~--------------------------------------------------------------i~~~--~~ 100 (194)
T PF08662_consen 86 TLYDVK-GKK--------------------------------------------------------------IFSF--GT 100 (194)
T ss_pred EEEcCc-ccE--------------------------------------------------------------eEee--cC
Confidence 999984 221 2222 24
Q ss_pred CCEEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC------CCcEEEEEc
Q 004410 389 SEVLDLSWSKNG-FLLSSSA---DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEV 458 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~---Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~------Dg~V~iwdl 458 (755)
..+..+.|+|+| +|++++. .|.|.+||+++.+.+..+.|.. ++.++|+| +|++|+++.. |+.++||+.
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcC-CCCEEEEEEeccceeccccEEEEEe
Confidence 567789999999 7777764 4679999999999998887765 78999999 9999999874 788999998
Q ss_pred CCCeE
Q 004410 459 RRCQV 463 (755)
Q Consensus 459 ~~~~~ 463 (755)
....+
T Consensus 179 ~G~~l 183 (194)
T PF08662_consen 179 QGRLL 183 (194)
T ss_pred cCeEe
Confidence 65443
No 238
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.5e-10 Score=116.72 Aligned_cols=193 Identities=15% Similarity=0.257 Sum_probs=143.6
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC---
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--- 461 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~--- 461 (755)
...+..++|++.- .++++..|-.|++||-.. ++...++ ....|+|++|-|.....|+.|+. +-|.||.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 3467789999866 889999999999999776 5555554 46789999999987888888876 45889976531
Q ss_pred ------------eEEEeccCCcceEEEEEccCCCeEEEEeC-CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 462 ------------QVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 462 ------------~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
++.+..+ +..|+++.|.+||..+++++. +..|.|||..++..+.- .....+.++-+.|
T Consensus 176 ~r~~~~~s~~~~qvl~~pg-h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL--------~~~glgg~slLkw 246 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPG-HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL--------IPKGLGGFSLLKW 246 (445)
T ss_pred ccccccccccchhheeCCC-CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--------cccCCCceeeEEE
Confidence 1122222 368999999999999999876 56799999999876532 1234567889999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 529 SPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 529 sp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
+| |+.+++++.-|+..++|.....-...+. .-..+.|...+|+|+|++|+-+.. |.-++|.+.
T Consensus 247 SP-dgd~lfaAt~davfrlw~e~q~wt~erw--~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 247 SP-DGDVLFAATCDAVFRLWQENQSWTKERW--ILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred cC-CCCEEEEecccceeeeehhcccceecce--eccCCceeeeeecCCCCEEEEEEc-CCceEEEEe
Confidence 99 9999999999999999965543333332 234568999999999998765543 334445443
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=1.4e-10 Score=116.00 Aligned_cols=266 Identities=18% Similarity=0.329 Sum_probs=170.4
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
.+-|.++.|..+|.+||||..+|.|.++.-..... .++..... | .+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~~t~------f-------------------------qsh- 71 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEYNFQTE------F-------------------------QSH- 71 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc-cceeeeee------e-------------------------ecc-
Confidence 45689999999999999999999999996432211 01000000 0 000
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCCe--------------------
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDR-------------------- 420 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~~-------------------- 420 (755)
...|+. +..+ .-...|..+.|.+++ .++..+.|++|++|.+....
T Consensus 72 -------epEFDY----LkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~l 139 (433)
T KOG1354|consen 72 -------EPEFDY----LKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSL 139 (433)
T ss_pred -------Ccccch----hhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCcccee
Confidence 000000 0000 123467889999876 78888999999999875321
Q ss_pred ---------------EEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC----eEEEecc-----CCcceE
Q 004410 421 ---------------CLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----QVVDYTD-----IREIVS 474 (755)
Q Consensus 421 ---------------~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~----~~~~~~~-----~~~~V~ 474 (755)
|.+++. |..-|.+|.++. |...++++ .|-.|.+|++.-. .++.... ...-|+
T Consensus 140 r~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVIT 217 (433)
T KOG1354|consen 140 RLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVIT 217 (433)
T ss_pred eceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHh
Confidence 122221 778899999998 87777776 4788999998632 3444333 345699
Q ss_pred EEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEEec----cc----ccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 475 AVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ----GK----KKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 475 ~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~----~~----~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
+..|+|. .+.++-.+..|+|++-|++...+-......+. +. ...--..|..+.|++ +|+++++-.. -+|
T Consensus 218 saEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltv 295 (433)
T KOG1354|consen 218 SAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTV 295 (433)
T ss_pred hhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-cee
Confidence 9999994 56788889999999999995543211110000 00 001124688999999 8888876543 689
Q ss_pred EEEECCcceeeEEE-eeecc----------CCce---EEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 546 RVLCGENVVGKFKA-SAFRV----------AGSQ---MFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 546 ~iwd~~~~~~~~~~-~~~~~----------~~~v---~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|||+.-....... ..... ...| ..++|+-++.+++||+..+.++++++..|.
T Consensus 296 k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 296 KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 99998532222211 11110 1122 457899999999999999999999987775
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.32 E-value=8e-10 Score=119.58 Aligned_cols=286 Identities=14% Similarity=0.116 Sum_probs=163.5
Q ss_pred cceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc-CCCcEEEEEccCCe
Q 004410 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHE 317 (755)
Q Consensus 239 ~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs-~Dg~I~vWdv~~~~ 317 (755)
..+.++|||+++++.+.||.|.++|+.+.. ...++.... ....+++|+||++|+++. .++.|.|+|..+.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGK-------VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSS-------EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCccc-------EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence 347899999999999999999999987654 223343333 357799999999998776 58899999999999
Q ss_pred eeeeeecCCCCC-------ceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 318 RLDGFDVQDTDP-------SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 318 ~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
.++.+....... ..+...+. ...+.+.. .....+.+.+.... ..+..........
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~--~~~fVv~l-------------kd~~~I~vVdy~d~---~~~~~~~i~~g~~ 173 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPG--RPEFVVNL-------------KDTGEIWVVDYSDP---KNLKVTTIKVGRF 173 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SS--SSEEEEEE-------------TTTTEEEEEETTTS---SCEEEEEEE--TT
T ss_pred ceeecccccccccccCCCceeEEecCC--CCEEEEEE-------------ccCCeEEEEEeccc---cccceeeeccccc
Confidence 888876543211 11211111 11111111 11122222221110 1111122233456
Q ss_pred EEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEeeC---------CCCEEEEEeCCCcEE
Q 004410 391 VLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPV---------DDNYFISGSIDGKVR 454 (755)
Q Consensus 391 V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~i~fsp~---------d~~~l~sgs~Dg~V~ 454 (755)
..+..|.|++ ++ ++...+..|-++|..+++.+..+. |...+..+ .+|. .+...++.-....+.
T Consensus 174 ~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~ 252 (369)
T PF02239_consen 174 PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVS 252 (369)
T ss_dssp EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT
T ss_pred ccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccc
Confidence 7789999999 54 445677899999999998887663 44444433 2231 222222323334566
Q ss_pred EEEcCCCeEEEeccCCcceEEEEEccCCCeEEEE----eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG----TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 455 iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~g----s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
+||....+++......+.-.-+..+|+++++++. ...+.|.++|..+.+....+. ......+..+.|++
T Consensus 253 v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~-------~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 253 VHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT-------PGPGKRVVHMEFNP 325 (369)
T ss_dssp -STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH-------HHHT--EEEEEE-T
T ss_pred cchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe-------ccCCCcEeccEECC
Confidence 7888888888655544544888999999999998 445789999999986654321 11234589999999
Q ss_pred CCCCEEEEEECCC--cEEEEECCcceeeEEE
Q 004410 531 SDPSKVIVTSADS--LVRVLCGENVVGKFKA 559 (755)
Q Consensus 531 ~d~~~l~s~s~Dg--~I~iwd~~~~~~~~~~ 559 (755)
++..+.++..++ .|.|||..+.......
T Consensus 326 -dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 326 -DGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp -TSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred -CCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 778776665443 6999999987666554
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=7.3e-10 Score=123.45 Aligned_cols=197 Identities=17% Similarity=0.228 Sum_probs=138.1
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCC--cEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDG--KVRIW 456 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~D---g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg--~V~iw 456 (755)
+..+...+...+|+|+| .|+.+..+ ..|++||+.+++......+...+.++.|+| +++.|+ +.+.++ .|++|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccEEEE
Confidence 34455678888999999 77766543 479999999987766556667778899999 887665 444444 59999
Q ss_pred EcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC-C--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-G--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
|+.+++...+..+........|+|||+.|+..+.. + .|+++|+.+++.... ......+..+.|+| ++
T Consensus 264 d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l---------~~~~~~~~~~~~sp-dg 333 (417)
T TIGR02800 264 DLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL---------TFRGGYNASPSWSP-DG 333 (417)
T ss_pred ECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe---------ecCCCCccCeEECC-CC
Confidence 99988777666665556678999999998876653 3 588888877654321 11234567789999 78
Q ss_pred CEEEEEECCC---cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC---cEEEEEcC
Q 004410 534 SKVIVTSADS---LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS---NIYIWNYS 595 (755)
Q Consensus 534 ~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg---~I~iWd~~ 595 (755)
.+|+.+..++ .|.+||..+....... .........|+|||++|+.++.++ .+++.+..
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~~~~~l~----~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGGGERVLT----DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCCCeEEcc----CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 8888887765 7888887763322211 122345568999999998887764 35555543
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.29 E-value=1.8e-08 Score=109.02 Aligned_cols=274 Identities=15% Similarity=0.205 Sum_probs=173.0
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC----CCcEEEEEccCC-eeeeeeecCCCCCce
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----DGTVRVWKVIEH-ERLDGFDVQDTDPSC 331 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~----Dg~I~vWdv~~~-~~~~~~~~~~~~~~~ 331 (755)
+.|.+|++......+... +.+ .-......|+++|++++|.++.+ ++.|..|++... ..+..
T Consensus 13 ~gI~~~~~d~~~g~l~~~---~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~---------- 78 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLV---QTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL---------- 78 (345)
T ss_dssp TEEEEEEEETTTTEEEEE---EEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE----------
T ss_pred CcEEEEEEcCCCCCceEe---eee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE----------
Confidence 789999885444434322 221 12344567889999999998876 467888877653 11111
Q ss_pred eEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe-CCC
Q 004410 332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADK 409 (755)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s-~Dg 409 (755)
+.+..........+++++++ +|+++. .+|
T Consensus 79 -------------------------------------------------~~~~~~~g~~p~~i~~~~~g~~l~vany~~g 109 (345)
T PF10282_consen 79 -------------------------------------------------LNSVPSGGSSPCHIAVDPDGRFLYVANYGGG 109 (345)
T ss_dssp -------------------------------------------------EEEEEESSSCEEEEEECTTSSEEEEEETTTT
T ss_pred -------------------------------------------------eeeeccCCCCcEEEEEecCCCEEEEEEccCC
Confidence 11111123345678999999 666665 589
Q ss_pred cEEEEeCCC-CeEEEE---Ee-----------cCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCCCe--EEE----ec
Q 004410 410 TVRLWQVGI-DRCLRV---FS-----------HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQ--VVD----YT 467 (755)
Q Consensus 410 ~V~iWdl~s-~~~~~~---~~-----------h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~~~--~~~----~~ 467 (755)
.|.++++.. +..... +. ......++.|+| +++++++... ...|++|++.... +.. ..
T Consensus 110 ~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 110 SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 999999987 443332 21 235578999999 8888777653 4579999997654 321 23
Q ss_pred cCCcceEEEEEccCCCeEEEEe-CCCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCC
Q 004410 468 DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADS 543 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg 543 (755)
........++|+|+++++.+.. .++.|.+|++. ++.+.....+...............++++| ++++|+++. ..+
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~ 267 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSN 267 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTT
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCC
Confidence 4456689999999999887755 46779999988 554433322222211111223688999999 777777665 567
Q ss_pred cEEEEECCc--ceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 004410 544 LVRVLCGEN--VVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYS 595 (755)
Q Consensus 544 ~I~iwd~~~--~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~ 595 (755)
.|.+|++.. ..................++++|+|++|+++. .++.|.+|+++
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 899999843 22233222222234578999999999999887 55689999885
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=5.7e-10 Score=118.54 Aligned_cols=265 Identities=16% Similarity=0.207 Sum_probs=175.0
Q ss_pred cCcceeecCCCCe-eEEeeCCCeEEEEECCCCcccccccccceeeeccc--ccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 237 RHGSATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE--GSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 237 ~~~~~~~spdg~~-lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~--~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
..+.+.++|||++ +|+|.---.|+|||+...... +.-|. ..|.-.-++.|-..++--..|.+|-+..-
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccceee---------eeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 3445899999996 456777889999997643321 22332 34444555666666666777888776532
Q ss_pred cCCeeeeeeecCC-------CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 314 IEHERLDGFDVQD-------TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 314 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.| ....+..+. ..+.|-.+.......++-+.... +.-+..+..
T Consensus 124 -~G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEq----------------------------GrfL~P~~~ 173 (703)
T KOG2321|consen 124 -YG-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ----------------------------GRFLNPFET 173 (703)
T ss_pred -cC-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccc----------------------------ccccccccc
Confidence 11 111111111 11112111111111111111111 122344555
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-------cCC-----cEEEEEEeeCCCCEEEEEeCCCcE
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------HNN-----YVTSVAFNPVDDNYFISGSIDGKV 453 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-------h~~-----~V~~i~fsp~d~~~l~sgs~Dg~V 453 (755)
..+.++++..++-. +|++|+.+|.|..||.++...+..+. |.+ .|+++.|.. ++-.+++|+.+|.|
T Consensus 174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v 252 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSV 252 (703)
T ss_pred ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcE
Confidence 56889999999876 88888999999999999887776663 222 399999997 79999999999999
Q ss_pred EEEEcCCCeEEEeccCCc--ceEEEEEccCCC-eEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 454 RIWEVRRCQVVDYTDIRE--IVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~--~V~~v~~spdg~-~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
.|||++..+.+...+|.. +|..+.|.+.+. --++......++|||-.+++...... ....++.+++-|
T Consensus 253 ~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE---------pt~~lND~C~~p 323 (703)
T KOG2321|consen 253 LIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE---------PTSDLNDFCFVP 323 (703)
T ss_pred EEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc---------ccCCcCceeeec
Confidence 999999998887666654 688899987533 33333455679999999988754221 235689999999
Q ss_pred CCCCEEEEEECCCcEEEEECC
Q 004410 531 SDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 531 ~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
+..+++++-.++.+..|=+.
T Consensus 324 -~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 324 -GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred -CCceEEEecCCCcceeEEcc
Confidence 88899999988887776544
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=3.2e-10 Score=122.63 Aligned_cols=272 Identities=14% Similarity=0.193 Sum_probs=188.4
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcc--------cccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--------ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~--------~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
..+++|+....++|+|+.||.++|-.+.+... ..+.+.+.|++.||.+.|.-+.|+.+.+.|-|...+|.|.
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 34689999999999999999999998765432 2345667799999999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
||-+-.+....++.. ....+
T Consensus 97 VWmlykgsW~EEMiN------------------------------------------------------------nRnKS 116 (1189)
T KOG2041|consen 97 VWMLYKGSWCEEMIN------------------------------------------------------------NRNKS 116 (1189)
T ss_pred EEeeecccHHHHHhh------------------------------------------------------------CcCcc
Confidence 999877654332211 12345
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe------
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ------ 462 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~------ 462 (755)
.|.+++|+.+| .+.....||.|.+=.++..+.-..--.......+.|++ |...++.+-.+|.+.+||....-
T Consensus 117 vV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~ 195 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEK 195 (1189)
T ss_pred EEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhh
Confidence 68889999999 88888888888877766543321111222345788999 88888888889999999986421
Q ss_pred -E-EE----eccCCcceEEEEEc--------cCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 463 -V-VD----YTDIREIVSAVCYC--------PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 463 -~-~~----~~~~~~~V~~v~~s--------pdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
+ +. +......|-.++|. ||...|+++..+|.+.|..-.+...... ...+-.|.+..|
T Consensus 196 ~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv---------~dtgm~~vgakW 266 (1189)
T KOG2041|consen 196 DCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV---------VDTGMKIVGAKW 266 (1189)
T ss_pred ceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE---------EecccEeeccee
Confidence 1 21 12223335556654 5788999999999998875543322111 112357889999
Q ss_pred cCCCCCEEEEEECCC---------cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE
Q 004410 529 SPSDPSKVIVTSADS---------LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 529 sp~d~~~l~s~s~Dg---------~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
++ ++..|++++.+. .|.+|..- +...+........|++++|-..|-.++.+
T Consensus 267 nh-~G~vLAvcG~~~da~~~~d~n~v~Fysp~---G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 267 NH-NGAVLAVCGNDSDADEPTDSNKVHFYSPY---GHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred cC-CCcEEEEccCcccccCccccceEEEeccc---hhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 99 999999998753 34454321 12222223345678888886666555443
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.3e-09 Score=121.74 Aligned_cols=218 Identities=18% Similarity=0.170 Sum_probs=134.6
Q ss_pred eecccccEEEEEEecCCCEEEEEcCC-C--cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGED-G--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~D-g--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++...
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~------------------------------------ 256 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK------------------------------------ 256 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE------------------------------------
Confidence 44566788999999999999876543 2 57788876654210
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCCc--EEEEeCCCCeEEEEEecCCcEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKT--VRLWQVGIDRCLRVFSHNNYVT 432 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg~--V~iWdl~s~~~~~~~~h~~~V~ 432 (755)
+..+.+ .....+|+|+| .|+ +.+.++. |++||+.+++......+.....
T Consensus 257 ------------------------lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~ 309 (448)
T PRK04792 257 ------------------------VTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDT 309 (448)
T ss_pred ------------------------ecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCcc
Confidence 011111 22357899999 555 4566665 7888998887665555666678
Q ss_pred EEEEeeCCCCEEEEEeC-CC--cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC-C--cEEEEECCCCeEee
Q 004410 433 SVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-G--NCRFYDIKDNQLYQ 506 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~-Dg--~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g--~I~iwD~~~~~~~~ 506 (755)
...|+| +++.|+..+. ++ .|.++|+.+++...+..........+|+|||++|+..+.+ + .|.++|+.++....
T Consensus 310 ~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 310 EPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred ceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 899999 8887766553 34 4777788877765543333334567999999999886653 3 46667888776532
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCCc--EEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADSL--VRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~--I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
. ... .......|+| +++.|+..+ .++. +.+++.... ..... ..+.+.+...+|+|
T Consensus 389 l-----t~~-----~~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~~G~-~~~~l--~~~~g~~~~p~Wsp 446 (448)
T PRK04792 389 L-----TST-----RLDESPSVAP-NGTMVIYSTTYQGKQVLAAVSIDGR-FKARL--PAGQGEVKSPAWSP 446 (448)
T ss_pred c-----cCC-----CCCCCceECC-CCCEEEEEEecCCceEEEEEECCCC-ceEEC--cCCCCCcCCCccCC
Confidence 1 110 1112347999 666666554 4443 555555322 22221 22344566677776
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2.1e-09 Score=120.16 Aligned_cols=232 Identities=14% Similarity=0.121 Sum_probs=143.9
Q ss_pred eEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC---CcEEEEEccCCeeeeeeecCCCCCceeEE
Q 004410 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLYF 334 (755)
Q Consensus 258 ~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~ 334 (755)
+|.++|..... .+.+..|...+...+|+|||+.|+..+.+ ..|.+|++.+++...
T Consensus 180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-------------- 237 (430)
T PRK00178 180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-------------- 237 (430)
T ss_pred EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------
Confidence 46666655322 13345577789999999999999876643 358888887664211
Q ss_pred eeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCC--c
Q 004410 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK--T 410 (755)
Q Consensus 335 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg--~ 410 (755)
+....+.+....|+|+| .|+ +.+.++ .
T Consensus 238 -------------------------------------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 238 -------------------------------------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred -------------------------------------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 01111223457899999 555 444455 5
Q ss_pred EEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CC--cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEE
Q 004410 411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV 487 (755)
Q Consensus 411 V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg--~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~ 487 (755)
|++||+.+++......+........|+| +++.|+..+. +| .|+++|+.+++...+...........|+|||+.|+.
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8888999887765555666677789999 8887766553 33 577888888776544333333456789999999988
Q ss_pred EeCC-C--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-C--cEEEEECCcceeeEEEee
Q 004410 488 GTMT-G--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-S--LVRVLCGENVVGKFKASA 561 (755)
Q Consensus 488 gs~d-g--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~ 561 (755)
...+ + .|.+||+.++..... .. ........|+| ++++++..+.+ + .|.+++...... ...
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~l-----t~-----~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g~~~-~~l-- 413 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRIL-----TD-----TSLDESPSVAP-NGTMLIYATRQQGRGVLMLVSINGRVR-LPL-- 413 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEc-----cC-----CCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCCce-EEC--
Confidence 7654 3 488899988765321 11 01122458999 77777666543 3 355555532211 111
Q ss_pred eccCCceEEEEEec
Q 004410 562 FRVAGSQMFATFTS 575 (755)
Q Consensus 562 ~~~~~~v~~l~fsp 575 (755)
....+.+...+|+|
T Consensus 414 ~~~~g~~~~p~ws~ 427 (430)
T PRK00178 414 PTAQGEVREPSWSP 427 (430)
T ss_pred cCCCCCcCCCccCC
Confidence 22334455566665
No 247
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=5.2e-11 Score=125.08 Aligned_cols=291 Identities=14% Similarity=0.208 Sum_probs=198.8
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
++..+.+|.+.+..++--.+.+-++++++|.+|++|.++....+..+-.+.-++++|+.+|..+.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3456788888888866555666778999999999999988777777666777899999999999999999998875 78
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|++||.--+..+..+... | -.+
T Consensus 805 giHlWDPFigr~Laq~~da------------------------------------------------------p---k~~ 827 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDA------------------------------------------------------P---KEG 827 (1034)
T ss_pred cceeecccccchhHhhhcC------------------------------------------------------c---ccC
Confidence 9999997655443221100 0 011
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
..+.|.++.--... .++-++...+|+++|.+.......++ .+..+.++++.| .|+.++.+-..|.|.+.|.+
T Consensus 828 a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 828 AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDAR 906 (1034)
T ss_pred CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecC
Confidence 22233333211112 34445788999999999888776664 457799999999 99999999999999999999
Q ss_pred CCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEE-EECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 460 RCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF-YDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 460 ~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~i-wD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
++.++ .|.........++- |..+.|+....|.++.+ |...++....+.+. +..+ ..|...-+.-++
T Consensus 907 ~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kp--------ppep---ahflqsvgpSLV 974 (1034)
T KOG4190|consen 907 NGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKP--------PPEP---AHFLQSVGPSLV 974 (1034)
T ss_pred CCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCC--------CCcc---hhhhhccCceeE
Confidence 99988 46655554444443 55567777777888888 87766654432111 0001 112222344567
Q ss_pred EEECCCcEEEEECCc------ceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 538 VTSADSLVRVLCGEN------VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~------~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
+......+.||.-.. ...+.+. ....+..++++.-|=..-++.|.+.|.|.+
T Consensus 975 ~a~~Gn~lgVYad~a~~ha~stitKiR~--d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 975 TAQNGNILGVYADSAELHAESTITKIRP--DEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred EeccCcEEEEEecchhhhhhhhhccccc--cccCCccceeeeccccchhhccCCCCceee
Confidence 777777778875221 1112222 345567788888887777888888888875
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.23 E-value=4e-10 Score=112.99 Aligned_cols=333 Identities=16% Similarity=0.203 Sum_probs=189.1
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
..++++.+.+.....-|...-+.+.+.|.++|||--....+..... ...-..+++++.+.++...|+.|-..|++
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-----~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-----YHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh-----hhhCCCCceEeeeeccceEEEEEEecceE
Confidence 3467888889988888999999999999999999754333222221 22345689999999999999999999999
Q ss_pred EEEEccCCe----eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 309 RVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 309 ~vWdv~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
.-+.+...- .++....+...+..+.|..... ..+..+.+.. +.|.-. +.-..+
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e----------------~V~s~~~dk~-~~~hc~------e~~~~l 149 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE----------------WVLSTGKDKQ-FAWHCT------ESGNRL 149 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce----------------eEEEeccccc-eEEEee------ccCCcc
Confidence 888764321 1111111111111111111100 0000000000 000000 000000
Q ss_pred cCCCCCEEEEEEc-CCC----eEEEEeCCCcEEEEeCC--CCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 385 QGHSSEVLDLSWS-KNG----FLLSSSADKTVRLWQVG--IDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 385 ~gh~~~V~~l~~s-~~~----~L~s~s~Dg~V~iWdl~--s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
.+ .+. .++. +.. +...|...|.|.+-.+. .-..+..+ .|.+.++++.|.| ...+|++|..|..|.+|
T Consensus 150 g~---Y~~-~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 150 GG---YNF-ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMW 224 (404)
T ss_pred cc---eEe-eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEE
Confidence 00 000 0000 000 12223333444443332 22333334 4999999999999 88999999999999999
Q ss_pred EcCCCe--EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeE------------------------
Q 004410 457 EVRRCQ--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI------------------------ 510 (755)
Q Consensus 457 dl~~~~--~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~------------------------ 510 (755)
|+...+ .....+|...|..+++-+--+.+++++.||.|-+||++........-.
T Consensus 225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~ 304 (404)
T KOG1409|consen 225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQ 304 (404)
T ss_pred eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhh
Confidence 997554 446888999999999999999999999999999999985543211000
Q ss_pred -Eecccc-cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC-----cceeeEEEeeeccCCceEEEEEecCCCEEEEE
Q 004410 511 -CLQGKK-KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE-----NVVGKFKASAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 511 -~~~~~~-~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~-----~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
.+..+. ..-+..+...+-+ +.....+-+..-.+|+-|.- +..+............|+.+.+..+-..|+|+
T Consensus 305 ~glr~h~crkcg~avc~~c~s--~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTs 382 (404)
T KOG1409|consen 305 LGLRQHHCRKCGKAVCGKCSS--NRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTS 382 (404)
T ss_pred hhhhhhhhhhhhhhcCccccc--CccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeec
Confidence 000000 0001111111111 22233333444455555421 11121112112334578888888888899999
Q ss_pred eCCCcEEEEEcCC
Q 004410 584 SEDSNIYIWNYSN 596 (755)
Q Consensus 584 s~Dg~I~iWd~~~ 596 (755)
|.|..|+|||+..
T Consensus 383 G~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 383 GTDRVIKIWDVRS 395 (404)
T ss_pred CCceEEEEEechh
Confidence 9999999999864
No 249
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=6.5e-09 Score=110.19 Aligned_cols=318 Identities=19% Similarity=0.222 Sum_probs=192.3
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-----------CCcEE
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-----------DGTVR 309 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-----------Dg~I~ 309 (755)
+.|||-|.+|++-..-| |.+|--..- ...+.+ .|.+ |.-+.|||+.+||+|-+. ...++
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f-------~r~~RF-~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESF-------DRIQRF-YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccH-------HHHHhc-cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 88999999999988876 889964321 122222 3554 888999999999999652 25799
Q ss_pred EEEccCCeeeeeeecCCCCCc-eeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
|||+.+|...+.+........ --.|...+.....+ +... ..+.++....+.+..+... ..
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~A--------------rm~~-~sisIyEtpsf~lld~Ksl----ki 346 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFA--------------RMTG-NSISIYETPSFMLLDKKSL----KI 346 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeE--------------Eecc-ceEEEEecCceeeeccccc----CC
Confidence 999999998888876422111 01112222111111 0011 2233333222332221111 23
Q ss_pred CCEEEEEEcCCC-eEEEEe-----CCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEE----------eCCC
Q 004410 389 SEVLDLSWSKNG-FLLSSS-----ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISG----------SIDG 451 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s-----~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sg----------s~Dg 451 (755)
..|....|+|.+ .||.=. .-..+-|-.+.+++.+++-. ++-.=..+-|-. +|++|+.- +.-.
T Consensus 347 ~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 347 SGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred ccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEe
Confidence 457888999988 444322 12346677777777666543 222222344444 56666542 1122
Q ss_pred cEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeC---CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 452 KVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 452 ~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~---dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
.+-|+.++...+. ......+.|.+.+|-|.|..+++-+. ..++.+|-+.+......+ .+.......+.+.
T Consensus 426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l------Vk~~dk~~~N~vf 499 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL------VKELDKKFANTVF 499 (698)
T ss_pred eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh------hhhhcccccceEE
Confidence 4667777765543 56677889999999999998877543 356889988742211110 1122335678899
Q ss_pred EcCCCCCEEEEE---ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC------CCcEEEEEcCCC
Q 004410 528 FSPSDPSKVIVT---SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE------DSNIYIWNYSNQ 597 (755)
Q Consensus 528 fsp~d~~~l~s~---s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~------Dg~I~iWd~~~~ 597 (755)
|+| .|++++++ +..|.+.++|......+... .......+.+.|.|.|+|+++++. |..-+||++...
T Consensus 500 wsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~--~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 500 WSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTA--SPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EcC-CCcEEEEEEecccccceEEEecchhhhhhcc--CccccccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 999 88887765 45789999998742222222 222235577899999999999875 556778887654
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=3.9e-09 Score=118.09 Aligned_cols=201 Identities=11% Similarity=0.140 Sum_probs=137.2
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCC--cE
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDG--KV 453 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~D---g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg--~V 453 (755)
...+..+...+....|+|+| .|+..+.+ ..|.+||+.+++........+.+....|+| +++.|+ +...+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCCCceE
Confidence 34455677788999999999 77766543 369999999887765544455566799999 888776 455555 58
Q ss_pred EEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC-CC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 454 RIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
++||+.+++...+..+........|+|||+.|+..+. +| .|+++|+.+++.... ... ........|+|
T Consensus 270 y~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l---t~~------~~~~~~~~~Sp 340 (430)
T PRK00178 270 YVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV---TFV------GNYNARPRLSA 340 (430)
T ss_pred EEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe---ecC------CCCccceEECC
Confidence 8889999887776666666778899999998877664 33 577788877764321 111 12234578999
Q ss_pred CCCCEEEEEECC-C--cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC---CcEEEEEcCC
Q 004410 531 SDPSKVIVTSAD-S--LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED---SNIYIWNYSN 596 (755)
Q Consensus 531 ~d~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D---g~I~iWd~~~ 596 (755)
++++|+....+ + .|.++|..+....... .........|+|||++|+..+.+ ..|+++++..
T Consensus 341 -dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt----~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 341 -DGKTLVMVHRQDGNFHVAAQDLQRGSVRILT----DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred -CCCEEEEEEccCCceEEEEEECCCCCEEEcc----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 77777766543 3 4778887764333221 11223356899999999877654 3467777653
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=4.5e-09 Score=119.32 Aligned_cols=149 Identities=23% Similarity=0.398 Sum_probs=123.7
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
+-++++.-++++|+.-+.|.+|......+.. .+.||++.|..+.|+-||++++++++|.++|+|++++.+..
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~- 210 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI-------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL- 210 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcc-------eecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc-
Confidence 4456777799999999999999976322211 47899999999999999999999999999999999887632
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
..+..+|...|..++|.++
T Consensus 211 ------------------------------------------------------------~~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 211 ------------------------------------------------------------GCTGFGHSARVWACCFLPN- 229 (967)
T ss_pred ------------------------------------------------------------CcccccccceeEEEEeccc-
Confidence 1234689999999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEE-ec-CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVF-SH-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~-~h-~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.+++++.|.+.++|+....+.. ++ .| ...|..++..+ +.-..++++.|+.+++||+..
T Consensus 230 ~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 9999999999999976544444 44 34 56799999988 888999999999999999853
No 252
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.18 E-value=4.5e-09 Score=103.58 Aligned_cols=199 Identities=15% Similarity=0.163 Sum_probs=143.5
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEE--EE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-CeEE-
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVV- 464 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~--~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~~~~- 464 (755)
-.++.|++.+ .++++-.+|.+.+-+.......+ .+ .|.-.+....|+-.+.+++++|+.|+.+..||++- +..+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 4567888888 88888888998866655544444 33 38889999999987889999999999999999993 3333
Q ss_pred -EeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCC-CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 465 -DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKD-NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 465 -~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~-~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
....|...|.+|.-+| .+.+|++|+.|-.|++||+++ ++.+.. ..-++.|..+.++|.....++.++.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~---------~~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK---------AKVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc---------CccccceEEEEecchhhhHHHHHHH
Confidence 2456788899998887 688999999999999999994 444422 2234789999999977667777777
Q ss_pred CCcEEEEECCcceeeEEE---eeeccCCceEEEEEecCCCEEEEEe-CCCcEE-EEEcCCCC
Q 004410 542 DSLVRVLCGENVVGKFKA---SAFRVAGSQMFATFTSDGKHVVSPS-EDSNIY-IWNYSNQD 598 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~---~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~-iWd~~~~~ 598 (755)
-+-.+|.+..+....+.. ....|.+-.....|.....+|+|++ .|..|+ +|-.-++.
T Consensus 275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 777788877765544222 2234555555555644445677765 566655 77665554
No 253
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=3.2e-08 Score=118.42 Aligned_cols=330 Identities=13% Similarity=0.213 Sum_probs=204.3
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEE----ECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEE
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVH----PVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw----~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vW 311 (755)
+.+-++.+-++...++.+..+|.|.+. +......+. .-.-+..|.+++||||+.+||.++.+++|.+.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI--------VGSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE--------EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 455568888999999999999999998 333222111 12245689999999999999999999999887
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEE--EeCCcceeccCccceEecCCCC
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV--VLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
. .+.+.+.+........ +....+.+.|.+... .+.|+...... .-++... ......+. +..
T Consensus 148 t-~~fd~i~E~~l~~~~~--------~~~~~VsVGWGkKeT----QF~Gs~gK~aa~~~~~p~~~---~~d~~~~s-~dd 210 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDF--------GESKHVSVGWGKKET----QFHGSAGKAAARQLRDPTVP---KVDEGKLS-WDD 210 (928)
T ss_pred e-ccceEEEEeecCcccc--------CCCceeeeccCcccC----ccCcchhhhhhhhccCCCCC---ccccCccc-cCC
Confidence 5 4555555544332211 112223333332211 11111111000 0001100 00112223 445
Q ss_pred CEEEEEEcCCC-eEEEEeC------CCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEc
Q 004410 390 EVLDLSWSKNG-FLLSSSA------DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEV 458 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~------Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~---Dg~V~iwdl 458 (755)
.-..++|-.|| ++++.+. -+.||||+-+ |....+-. -.+--.+++|-| .|+++++.-. ...|.+|.-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence 66779999999 7777664 2679999865 55444432 344456789999 9999988764 345677765
Q ss_pred CCCeEE----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 459 RRCQVV----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 459 ~~~~~~----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
..-+.- .+......|..+.|++|+..||+...|. |.+|-..+.+-..+..+.+. ....+..+.|+|.++.
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-----~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-----SSESVNFVKWDPEKPL 362 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-----CCCCCCceEECCCCCC
Confidence 443322 2224456799999999999999977555 99999988775544333222 1233455999998888
Q ss_pred EEEEEECCCcEEEEE-----------------------CCcceee-E---------EEeeeccCCceEEEEEecCCCEEE
Q 004410 535 KVIVTSADSLVRVLC-----------------------GENVVGK-F---------KASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 535 ~l~s~s~Dg~I~iwd-----------------------~~~~~~~-~---------~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
.|.+.+.++.+..++ +.+.... + .........+|..++|++++..++
T Consensus 363 ~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a 442 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA 442 (928)
T ss_pred EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE
Confidence 888887766665543 2111100 0 001123457899999999998899
Q ss_pred EEeCCCcEEEEEcCCCC
Q 004410 582 SPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~ 598 (755)
+-..||.|.+|......
T Consensus 443 vl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 443 VLTSDGSLSIYEWDLKN 459 (928)
T ss_pred EEECCCCEEEEEecCCC
Confidence 99999999999965543
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=2.6e-07 Score=94.45 Aligned_cols=276 Identities=14% Similarity=0.221 Sum_probs=183.8
Q ss_pred CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC---CcEEEEEccC--CeeeeeeecCCCCCc
Q 004410 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIE--HERLDGFDVQDTDPS 330 (755)
Q Consensus 256 dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D---g~I~vWdv~~--~~~~~~~~~~~~~~~ 330 (755)
+.-|.+|++.+....+... .+.++.+.++-|+|+|++++|.++-.+ |.|..|.+.. |... .+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln------- 82 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLN------- 82 (346)
T ss_pred CCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-Eee-------
Confidence 5679999988666555533 245677889999999999999998655 5666666543 2210 000
Q ss_pred eeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe-CC
Q 004410 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-AD 408 (755)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s-~D 408 (755)
...+.+ ..-+.++.++++ +|+++. .-
T Consensus 83 --------------------------------------------------~~~~~g--~~p~yvsvd~~g~~vf~AnY~~ 110 (346)
T COG2706 83 --------------------------------------------------RQTLPG--SPPCYVSVDEDGRFVFVANYHS 110 (346)
T ss_pred --------------------------------------------------ccccCC--CCCeEEEECCCCCEEEEEEccC
Confidence 001112 222678899999 666665 45
Q ss_pred CcEEEEeCCC-CeE---EEEEecCCc----------EEEEEEeeCCCCEEEEEeCC-CcEEEEEcCCCeEEE----eccC
Q 004410 409 KTVRLWQVGI-DRC---LRVFSHNNY----------VTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVVD----YTDI 469 (755)
Q Consensus 409 g~V~iWdl~s-~~~---~~~~~h~~~----------V~~i~fsp~d~~~l~sgs~D-g~V~iwdl~~~~~~~----~~~~ 469 (755)
|.|.++-++. |.. +..+.|.+. +....+.| ++++|++.... -+|.+|++..+++.. ....
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 8899998865 333 334456665 88999999 99999887653 469999999876652 2244
Q ss_pred CcceEEEEEccCCCeEEEEeC-CCcEEEEECCCC--eEeeeeeE-EecccccCCCCCeEEEEEcCCCCCEEEEEEC-CCc
Q 004410 470 REIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDN--QLYQQNQI-CLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-DSL 544 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~--~~~~~~~~-~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg~ 544 (755)
......|.|+|++++..+.+. +++|-+|..... ++. ..+. ......-.......++.++| ++++|.++.. ...
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~-~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNRg~ds 267 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE-ELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNRGHDS 267 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE-EeeeeccCccccCCCCceeEEEECC-CCCEEEEecCCCCe
Confidence 556889999999999877654 889999988873 322 2221 11111122345677899999 8888887754 447
Q ss_pred EEEEECCcceeeEEE--eeeccCCceEEEEEecCCCEEEEEeCCC-cEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKA--SAFRVAGSQMFATFTSDGKHVVSPSEDS-NIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~--~~~~~~~~v~~l~fspdg~~L~sgs~Dg-~I~iWd~~~~~ 598 (755)
|.++.+.....++.. ....+........|+++|++|+++..|+ +|.+|..+...
T Consensus 268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 777776654333332 2222333457889999999999998764 58999876543
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.13 E-value=2.6e-07 Score=98.06 Aligned_cols=270 Identities=11% Similarity=0.049 Sum_probs=163.5
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC----------CCcEEEEEccCCeeeeeeecCC
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----------DGTVRVWKVIEHERLDGFDVQD 326 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~----------Dg~I~vWdv~~~~~~~~~~~~~ 326 (755)
++|.|.|..+... +. ++..-..+- .+ +||||+.|+.+.. +..|.|||+.+.+.+.++..+.
T Consensus 27 ~~v~ViD~~~~~v-~g------~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRV-LG------MTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEE-EE------EEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 7899999765331 22 222111222 24 9999998887765 7899999999998887766432
Q ss_pred CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEE
Q 004410 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405 (755)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~ 405 (755)
.+- . . .......++++|+| +|+..
T Consensus 98 ~p~----------------------------------------------------~--~-~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 98 GPR----------------------------------------------------F--L-VGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred Cch----------------------------------------------------h--h-ccCccceEEECCCCCEEEEe
Confidence 210 0 0 11223457899999 66655
Q ss_pred e-C-CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-CeEE----EeccC-Ccce-EEE
Q 004410 406 S-A-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVV----DYTDI-REIV-SAV 476 (755)
Q Consensus 406 s-~-Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~~~~----~~~~~-~~~V-~~v 476 (755)
. . +..|-+.|+.+++.+..+.-.+...-+..++ .-+..-+.||......+.+ ++.. ..... ...+ ..-
T Consensus 123 n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e---~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 123 QFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN---DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred cCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC---CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 5 3 7899999999999999886444222222222 2222333456555544432 1111 01111 0000 001
Q ss_pred EEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc----cCCCCCeEEEEEcCCCCCEEEEEE----------C
Q 004410 477 CYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK----KLPGKRITGFQFSPSDPSKVIVTS----------A 541 (755)
Q Consensus 477 ~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~----~~~~~~I~~v~fsp~d~~~l~s~s----------~ 541 (755)
.|.+ +|+++.+... |+|.+.|+.+........+.+.... ......+..++++| +++.+++.. .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCC
Confidence 4455 8888888666 9999999766543332222221111 12334455599999 666666632 2
Q ss_pred CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCC
Q 004410 542 DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
.+.|.++|..+........ ....+..++++|||+ +|++.. .++.|.+.|..+++
T Consensus 278 ~~~V~ViD~~t~kvi~~i~---vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIE---LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCEEEEEECCCCeEEEEEe---CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 2579999988766555542 345788999999999 888776 57889999999887
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=1.9e-09 Score=122.34 Aligned_cols=198 Identities=18% Similarity=0.265 Sum_probs=152.6
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
+.|....+.-+...++.++.+..+.+||...+....++..... ..+.....-...........++.-+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er------------~~l~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER------------CTLYSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCce------------EEEEeEEEEeccCcEEEEEeccccc
Confidence 4455556666778899999999999999988766554432221 1112222222333445566677778
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEE--EEecCCcEEEEEEeeCCC
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDD 441 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~--~~~h~~~V~~i~fsp~d~ 441 (755)
.+++|.+. ...+|. .+.||.+.|..+.|+.+| ++++.|+|+++|+|++++.+... .|+|+..|..+.|.| +
T Consensus 156 ~iivW~~~---~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n- 229 (967)
T KOG0974|consen 156 EIIVWKPH---EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N- 229 (967)
T ss_pred cEEEEecc---ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c-
Confidence 88888776 223333 688999999999999999 99999999999999999887765 567999999999998 4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEeccCC-cceEEEEEccCCCeEEEEeCCCcEEEEECCC
Q 004410 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 442 ~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~-~~V~~v~~spdg~~la~gs~dg~I~iwD~~~ 501 (755)
.+++++.|-+.++|+....+...+..|. ..|..+++.++...+++++.||.+++||+..
T Consensus 230 -~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999999999987776665555544 4699999999999999999999999999864
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=1.6e-08 Score=113.10 Aligned_cols=196 Identities=15% Similarity=0.186 Sum_probs=127.7
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCc--EEEEE
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGK--VRIWE 457 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~-Dg--~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~--V~iwd 457 (755)
..+...+....|+||| .|+..+. ++ .|++||+.+++...............|+| +++.|+ +.+.+|. |+++|
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEEEEE
Confidence 3456678889999999 6666543 33 58899998887654433344456789999 888665 4566665 88889
Q ss_pred cCCCeEEEeccCCcceEEEEEccCCCeEEEEeC-CC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 458 l~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
+.+++...+..+.......+|+|||+.|+..+. +| .|+++|+.+++.... .. .........|+| +++
T Consensus 293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L---t~------~g~~~~~~~~Sp-DG~ 362 (448)
T PRK04792 293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL---TF------EGEQNLGGSITP-DGR 362 (448)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE---ec------CCCCCcCeeECC-CCC
Confidence 998887777666666788999999998877654 33 477778877764321 11 112234568999 677
Q ss_pred EEEEEEC-CCc--EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-Cc--EEEEEcC
Q 004410 535 KVIVTSA-DSL--VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-SN--IYIWNYS 595 (755)
Q Consensus 535 ~l~s~s~-Dg~--I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-g~--I~iWd~~ 595 (755)
+|+..+. ++. |.++|..+....... . ........|+|||++|+..+.+ +. |++++.+
T Consensus 363 ~l~~~~~~~g~~~I~~~dl~~g~~~~lt--~--~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 363 SMIMVNRTNGKFNIARQDLETGAMQVLT--S--TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEEEEecCCceEEEEEECCCCCeEEcc--C--CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 7766554 444 445666554322211 1 1122345899999998776644 33 7777764
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=1.4e-09 Score=117.90 Aligned_cols=252 Identities=17% Similarity=0.225 Sum_probs=178.0
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
.....|+.|+....|+|.||.||.++|-.+.+...-..... ++. .+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------laa--------------------------~s- 59 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------LAA--------------------------AS- 59 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------ccc--------------------------cc-
Confidence 45678999999999999999999999998876532111000 000 00
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeC
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPV 439 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~ 439 (755)
.-..-+++.||...|.-+.|+.+. .|-++..+|.|.+|-+-.+...... .....|.++.|+.
T Consensus 60 -------------nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~- 125 (1189)
T KOG2041|consen 60 -------------NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL- 125 (1189)
T ss_pred -------------ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-
Confidence 001135688999999999999888 8888999999999988766543322 2567799999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee---eeeEEecccc
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ---QNQICLQGKK 516 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~---~~~~~~~~~~ 516 (755)
+|..+.....||.|.+=.++..++....-.......+.|++|.+.++.+-.+|.+++||...+-... ...+...+..
T Consensus 126 dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~ 205 (1189)
T KOG2041|consen 126 DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF 205 (1189)
T ss_pred CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee
Confidence 9999999999999988888776655322222334578999999999999999999999987643221 1112222223
Q ss_pred cCCCCCeEEEEEc-------CCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 517 KLPGKRITGFQFS-------PSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 517 ~~~~~~I~~v~fs-------p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
.....+|..+.|. |.+...++++-..|.+.|..-.+-...... ...-.+..+.|+++|..|+.++.|
T Consensus 206 s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~---dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 206 SNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV---DTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred cCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE---ecccEeecceecCCCcEEEEccCc
Confidence 3334456666664 236778999999999998765443222222 223567889999999999999865
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.10 E-value=3.7e-07 Score=98.80 Aligned_cols=255 Identities=16% Similarity=0.235 Sum_probs=158.0
Q ss_pred CcceeecCCCCeeEEeeC----CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc-CCCcEEEEE
Q 004410 238 HGSATLKPGDHELTLGQR----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWK 312 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~----dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs-~Dg~I~vWd 312 (755)
...++++|++++|.+... .+.|..|.+......+..+ ............++++|++++|+++. .+|.|.+++
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~---~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL---NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE---EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe---eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 344899999999998866 5789999877543223222 22222334456799999999999987 488999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+.....+...... + ...+. ...+ .........
T Consensus 116 l~~~g~l~~~~~~--------~----------------------~~~g~---------------g~~~---~rq~~~h~H 147 (345)
T PF10282_consen 116 LDDDGSLGEVVQT--------V----------------------RHEGS---------------GPNP---DRQEGPHPH 147 (345)
T ss_dssp ECTTSEEEEEEEE--------E----------------------ESEEE---------------ESST---TTTSSTCEE
T ss_pred ccCCcccceeeee--------c----------------------ccCCC---------------CCcc---cccccccce
Confidence 9774322111000 0 00000 0000 011234578
Q ss_pred EEEEcCCC-eEEEEe-CCCcEEEEeCCCCe--EEE----EEecCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEEcC--CC
Q 004410 393 DLSWSKNG-FLLSSS-ADKTVRLWQVGIDR--CLR----VFSHNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVR--RC 461 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~--~~~----~~~h~~~V~~i~fsp~d~~~l~s-gs~Dg~V~iwdl~--~~ 461 (755)
++.++|++ ++++.. ....|.+|++.... ... .+........+.|+| +++++++ .-.++.|.++++. ++
T Consensus 148 ~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDG 226 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCC
Confidence 89999998 555543 34579999987655 322 223667789999999 7777655 5567889999998 44
Q ss_pred eEEE---ecc------CCcceEEEEEccCCCeEEEEeC-CCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 462 QVVD---YTD------IREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 462 ~~~~---~~~------~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
.... ... .......|+++|||++|+++.. .+.|.+|++. ++.+.....+. ..+.....++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~------~~G~~Pr~~~~s 300 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP------TGGKFPRHFAFS 300 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE------ESSSSEEEEEE-
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe------CCCCCccEEEEe
Confidence 3321 111 1125789999999999988664 5679999993 44544322221 224457899999
Q ss_pred CCCCCEEEEEE-CCCcEEEEECC
Q 004410 530 PSDPSKVIVTS-ADSLVRVLCGE 551 (755)
Q Consensus 530 p~d~~~l~s~s-~Dg~I~iwd~~ 551 (755)
| ++++|+++. .++.|.+|+..
T Consensus 301 ~-~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 301 P-DGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp T-TSSEEEEEETTTTEEEEEEEE
T ss_pred C-CCCEEEEEecCCCeEEEEEEe
Confidence 9 778777776 56789998764
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=6e-08 Score=107.68 Aligned_cols=173 Identities=16% Similarity=0.181 Sum_probs=106.6
Q ss_pred EEEEEEcCCC-eEEEEeC-----CCcEEEEeCCC---CeEEEEEec-CCcEEEEEEeeCCCCEEEEEe-CCCcEEEE--E
Q 004410 391 VLDLSWSKNG-FLLSSSA-----DKTVRLWQVGI---DRCLRVFSH-NNYVTSVAFNPVDDNYFISGS-IDGKVRIW--E 457 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~-----Dg~V~iWdl~s---~~~~~~~~h-~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iw--d 457 (755)
....+|+||| .|+..+. +..+.+|++.. +........ ........|+| |++.|+..+ .+|...|| +
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEE
Confidence 3457899999 6665442 33445577765 333333332 23456789999 888777655 46655555 4
Q ss_pred cCC--CeEEEeccCCcceEEEEEccCCCeEEEEeCC---CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 458 VRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 458 l~~--~~~~~~~~~~~~V~~v~~spdg~~la~gs~d---g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+.. +....+......+....|+|||+.|+....+ ..|.+||+.+++.... . .....+....|+| +
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-----t----~~~~~~~~p~wSp-D 381 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-----T----TSPENKESPSWAI-D 381 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-----c----CCCCCccceEECC-C
Confidence 432 3334444455567789999999999876653 3699999998876431 1 1123456789999 7
Q ss_pred CCEEEEEEC---CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC
Q 004410 533 PSKVIVTSA---DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 533 ~~~l~s~s~---Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg 577 (755)
+++|+.... ...|.++++........ ....+.+...+|+|-.
T Consensus 382 G~~L~f~~~~~g~~~L~~vdl~~g~~~~L---t~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 382 SLHLVYSAGNSNESELYLISLITKKTRKI---VIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEe---ecCCCcccCceecCCC
Confidence 777765443 34677788765433322 2233455667787643
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=6e-10 Score=131.46 Aligned_cols=227 Identities=19% Similarity=0.306 Sum_probs=160.3
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
.+.+.++.-+|...+.++|+.||.|++|....+..... .++ .|. ..|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~----~rt-~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVC----FRT-AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEE----eec-cCc-chhhhhhhcccCCceeeeccCCceeecccC
Confidence 44555677789999999999999999999876543322 111 233 789999999999999999999999999864
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
.+|....+.|.....++
T Consensus 2282 ---------------------------------------------------------------pk~~~s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2282 ---------------------------------------------------------------PKPYTSWQCHNKALSDF 2298 (2439)
T ss_pred ---------------------------------------------------------------CcceeccccCCccccce
Confidence 12344556787778888
Q ss_pred EEcCCCeEEEE---eCCCcEEEEeCCC--CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccC
Q 004410 395 SWSKNGFLLSS---SADKTVRLWQVGI--DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI 469 (755)
Q Consensus 395 ~~s~~~~L~s~---s~Dg~V~iWdl~s--~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~ 469 (755)
.|... .++++ +.++.+.+||.-- +..+....|.+.++++++.| ...+|++|+.+|.|++||++..+++.....
T Consensus 2299 ~Fi~s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2299 RFIGS-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred eeeeh-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence 88763 44444 3678999999642 22222245999999999999 899999999999999999998887642221
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
++ ...+|++|+..|.++||++..-.++..+.... .+.. --...+.+..-.-.+.|.+++.|++
T Consensus 2377 --------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~-ak~g--fFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 --------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH-AKQG--FFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred --------hh-hhheeeccCcccceEEEEccccchhhcCchhh-cccc--hhhhcCceeeeccCceEEEecCCCC
Confidence 33 55789999999999999999877665443211 1000 0112223333324456777777653
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.06 E-value=3.5e-08 Score=106.13 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=117.1
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAV 476 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v 476 (755)
.++-|...|.|.+|++..++....+. |.+.|+++.++. +-..|.+++.|+.+..|+...++.+ .+......+.++
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 78888899999999999999988884 999999999997 8899999999999999999999888 577778889999
Q ss_pred EEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC----CCCEEE-EEECCCcEEEEECC
Q 004410 477 CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS----DPSKVI-VTSADSLVRVLCGE 551 (755)
Q Consensus 477 ~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~----d~~~l~-s~s~Dg~I~iwd~~ 551 (755)
+++|||+.+++++ +.|++||+.+++.+.. ...|...|.+++|.-. -+.+++ +...+..+.+|-..
T Consensus 151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~--------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 151 CISPDGKILLTAS--RQIKVLDIETKEVVIT--------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEcCCCCEEEecc--ceEEEEEccCceEEEE--------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 9999999999887 7899999999998864 4457889999998763 134444 44556667777544
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.05 E-value=4.2e-09 Score=105.83 Aligned_cols=267 Identities=14% Similarity=0.152 Sum_probs=189.4
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC-CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
..+.+.||.+.|++...-|-..-+++++.|.++|||--.+ ++.-..
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps--------------------------------- 62 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS--------------------------------- 62 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch---------------------------------
Confidence 3456889999999999988888899999999999995322 111000
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC----CeEEEEE-ecC
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI----DRCLRVF-SHN 428 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s----~~~~~~~-~h~ 428 (755)
+. ..-..++.++.+.+.. .|+.+-..|++.-+.+.. ...++.+ .|.
T Consensus 63 --------------------------I~--~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~ 114 (404)
T KOG1409|consen 63 --------------------------IY--HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ 114 (404)
T ss_pred --------------------------hh--hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh
Confidence 00 1124567888898888 888888889998886543 2233333 499
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeee
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~ 508 (755)
..|..+-|+- ....+++.+.|..+...-.+.+..+.-.......+++.+.-. +..+|...|.|.+-.+....+.
T Consensus 115 ~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~--- 188 (404)
T KOG1409|consen 115 ARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQ--- 188 (404)
T ss_pred cceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCc---
Confidence 9999999997 788999999998887766666554421111222222222222 6667777777766655433332
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
+-.....|...++++.|.| ....+++|..|..|.+||+.-...... ...+|...|..++..+--+.+++++.||.
T Consensus 189 ---~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~-el~gh~~kV~~l~~~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 189 ---LITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAY-ELQGHNDKVQALSYAQHTRQLISCGEDGG 263 (404)
T ss_pred ---eEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceee-eeccchhhhhhhhhhhhheeeeeccCCCe
Confidence 1123456788999999999 889999999999999999765433322 23678888988888888899999999999
Q ss_pred EEEEEcCCCCcccCCCccccceeeee
Q 004410 589 IYIWNYSNQDKSSSRSKSIWSCESFL 614 (755)
Q Consensus 589 I~iWd~~~~~~~~~~~~~~~~~~~f~ 614 (755)
|.+|+++..+.+....+..+.|+++.
T Consensus 264 i~~w~mn~~r~etpewl~s~~cQ~c~ 289 (404)
T KOG1409|consen 264 IVVWNMNVKRVETPEWLDSDSCQKCN 289 (404)
T ss_pred EEEEeccceeecCccccccchhhhhC
Confidence 99999998886666666666665553
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=2.4e-08 Score=110.86 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=79.7
Q ss_pred EEEEEEcCCC-eEEEEe-CCCcEEEE--eCCC-CeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEEcCCC
Q 004410 391 VLDLSWSKNG-FLLSSS-ADKTVRLW--QVGI-DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRC 461 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s-~Dg~V~iW--dl~s-~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~D---g~V~iwdl~~~ 461 (755)
....+|+||| .|+..+ .++...|| ++.. +.....+ .+...+....|+| +++.|+..+.+ ..|.+||+.++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCC
Confidence 4567999999 666655 46655555 4432 2223333 3456778899999 89888776543 36999999999
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeC---CCcEEEEECCCCeEe
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLY 505 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~---dg~I~iwD~~~~~~~ 505 (755)
+...+......+....|+|||+.|+.... ...|+++|+.+++..
T Consensus 362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 88766655556778999999998876543 345888899877653
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.00 E-value=4.8e-07 Score=95.98 Aligned_cols=246 Identities=11% Similarity=0.044 Sum_probs=145.5
Q ss_pred eecCCCCeeEEee----------CCCeEEEEECCCCcccccccccc-e-eeecccccEEEEEEecCCCEEEEEcC--CCc
Q 004410 242 TLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG-Q-EFLAHEGSILTMKFSLDGQYLASGGE--DGT 307 (755)
Q Consensus 242 ~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~-~-~l~~H~~~V~~l~fspdg~~LaSgs~--Dg~ 307 (755)
.++|||+.|+.+. .+..|.|||..+....- .+... . +++ ....-..++++|||++|+.... +..
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-~i~~p~~p~~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~ 129 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-DIELPEGPRFL-VGTYPWMTSLTPDNKTLLFYQFSPSPA 129 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-EEccCCCchhh-ccCccceEEECCCCCEEEEecCCCCCE
Confidence 3999999877664 47899999987654321 11110 0 000 1122346889999999998763 689
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|-|.|+.+++.+.++..+. ...++........+.+.+. . . .......++....-...++.....++.
T Consensus 130 V~VvD~~~~kvv~ei~vp~--~~~vy~t~e~~~~~~~~Dg--~-~---~~v~~d~~g~~~~~~~~vf~~~~~~v~----- 196 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPD--CYHIFPTANDTFFMHCRDG--S-L---AKVGYGTKGNPKIKPTEVFHPEDEYLI----- 196 (352)
T ss_pred EEEEECCCCcEEEEEeCCC--CcEEEEecCCccEEEeecC--c-e---EEEEecCCCceEEeeeeeecCCccccc-----
Confidence 9999999999999888743 1122222222111111111 1 0 001111111111111111110001110
Q ss_pred CCCEEEEEEcC-CCeEEEEeCCCcEEEEeCCC-----CeEEEEEe--------cCCcEEEEEEeeCCCCEEEEEeC----
Q 004410 388 SSEVLDLSWSK-NGFLLSSSADKTVRLWQVGI-----DRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI---- 449 (755)
Q Consensus 388 ~~~V~~l~~s~-~~~L~s~s~Dg~V~iWdl~s-----~~~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs~---- 449 (755)
..+ .|.+ ++..+-.+..|+|.+-|+.. .+....+. ..+.+.-++++| +++.++....
T Consensus 197 ~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 197 NHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAK 271 (352)
T ss_pred cCC----ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCcc
Confidence 111 3455 66444444449999999543 33333321 233445599999 7777766431
Q ss_pred ------CCcEEEEEcCCCeEEEeccCCcceEEEEEccCCC-eEEEEe-CCCcEEEEECCCCeEeee
Q 004410 450 ------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGT-MTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 450 ------Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~-~la~gs-~dg~I~iwD~~~~~~~~~ 507 (755)
.+.|.++|..+++++........+..++++||++ +|++.. .++.|.++|+.+++.+..
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 2479999999999998777788999999999999 777766 578899999999988764
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.3e-07 Score=101.95 Aligned_cols=191 Identities=17% Similarity=0.232 Sum_probs=141.7
Q ss_pred cCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEe------c--------------CCCEEEEEc
Q 004410 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS------L--------------DGQYLASGG 303 (755)
Q Consensus 244 spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fs------p--------------dg~~LaSgs 303 (755)
.|...++|....||.++||+..++..... +.+.+. -.+..++.+|. | |...||-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e-~~p~~~---~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQE-FAPIAS---LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeee-eccchh---ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 45667899999999999999876543211 111111 12334444442 1 223566666
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
..|.|.++++..++....+.
T Consensus 78 ~~g~v~~ys~~~g~it~~~s------------------------------------------------------------ 97 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLS------------------------------------------------------------ 97 (541)
T ss_pred CCccEEEEEecCCeEEEEEe------------------------------------------------------------
Confidence 67777777776665433221
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
-.+|.+.|.++.++.+- .|.+++.|+.+..|+....+.++.+. ....+.+++++| |+..+++++ +.|++||+.++
T Consensus 98 t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~k 174 (541)
T KOG4547|consen 98 TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETK 174 (541)
T ss_pred cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCc
Confidence 24688999999998876 99999999999999999999999886 677899999999 899999887 78999999999
Q ss_pred eEE-EeccCCcceEEEEEccC-----CCeEEEEe-CCCcEEEEECCC
Q 004410 462 QVV-DYTDIREIVSAVCYCPD-----GKGGIVGT-MTGNCRFYDIKD 501 (755)
Q Consensus 462 ~~~-~~~~~~~~V~~v~~spd-----g~~la~gs-~dg~I~iwD~~~ 501 (755)
+++ .+.+|.+.|.++.|..+ |.+++++. .+..+.+|-+..
T Consensus 175 evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 175 EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 988 78999999999999887 77776643 344577776654
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.96 E-value=2.1e-06 Score=103.05 Aligned_cols=346 Identities=15% Similarity=0.208 Sum_probs=200.8
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCC--------------Ccccc-------cccccc----------------
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKK--------------QSREL-------SSLYTG---------------- 277 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~--------------~~~~~-------~~~~~~---------------- 277 (755)
...+.+++||||+..||..+.++++.+-...- ..+.+ .+.+.+
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 34678899999999999999999987763210 00000 000000
Q ss_pred ----eeeecccccEEEEEEecCCCEEEEEcC---C---CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEee
Q 004410 278 ----QEFLAHEGSILTMKFSLDGQYLASGGE---D---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDV 347 (755)
Q Consensus 278 ----~~l~~H~~~V~~l~fspdg~~LaSgs~---D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (755)
..+. +.+.-..|.|-.||.|+|+.+. . ..||||+-+ |.....-.....-..++.|.|.+. .++....
T Consensus 200 ~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~ 276 (928)
T PF04762_consen 200 KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQR 276 (928)
T ss_pred ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEE
Confidence 0112 4445667899999999998764 2 579999854 554333332233344556666552 2222211
Q ss_pred cCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEE--
Q 004410 348 DKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-- 424 (755)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~-- 424 (755)
......++.+.....+..+- ...+......|..|.|++++ .|+..-.| .|.+|-..+...-..
T Consensus 277 ------------~~~~~~VvFfErNGLrhgeF-~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqe 342 (928)
T PF04762_consen 277 ------------LPDRHDVVFFERNGLRHGEF-TLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQE 342 (928)
T ss_pred ------------cCCCcEEEEEecCCcEeeeE-ecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEE
Confidence 11123333333322111110 01112345678999999999 66655544 499999887653222
Q ss_pred E--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC----C----------------CeEEE----------------e
Q 004410 425 F--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----R----------------CQVVD----------------Y 466 (755)
Q Consensus 425 ~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~----~----------------~~~~~----------------~ 466 (755)
+ .....+..+.|+|.+...|...+.+|.+..+++. . |..+. .
T Consensus 343 i~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~ 422 (928)
T PF04762_consen 343 IRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE 422 (928)
T ss_pred EEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence 2 2344566699999878888888887877665542 1 11111 1
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee------eeeEEe----cccccCCCCCeEEEEEcCCCCCEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ------QNQICL----QGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~------~~~~~~----~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
......|.+++|++++..+++-..||.|.+|......... ...+.. ..........+..+.|.. +...+
T Consensus 423 l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 501 (928)
T PF04762_consen 423 LELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLL 501 (928)
T ss_pred EcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEE
Confidence 1234679999999999889999999999999865433221 000100 011122355678888887 44555
Q ss_pred EEEECC---CcEEEEECCcceee-EEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 537 IVTSAD---SLVRVLCGENVVGK-FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 537 ~s~s~D---g~I~iwd~~~~~~~-~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++...+ ..+.+++..+.... .........+.+..+...++...++.-..||.|+..+.....
T Consensus 502 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 502 VLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 555443 67777876443222 112123344556666666665557777889999977766554
No 268
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.96 E-value=1.8e-07 Score=91.21 Aligned_cols=192 Identities=14% Similarity=0.048 Sum_probs=136.9
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecC--CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE----EeccCCcceE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV----DYTDIREIVS 474 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~--~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~----~~~~~~~~V~ 474 (755)
.+..++.|.++++.++..+...... |. -.+.++.+++ +++++++.+....|..|.+...... ......+.-.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF 207 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF 207 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee-eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence 6777888999999988655433322 32 3388999999 9999999999999999999764321 3444555667
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC-CEEEEEECCCcEEEEECCcc
Q 004410 475 AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP-SKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 475 ~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~-~~l~s~s~Dg~I~iwd~~~~ 553 (755)
+..|+.....+|+++.||++.|||++........ ....+..|.+.+..+.|+|.+. .+|+..-.-+.+.|.|+++.
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~---~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE---ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhh---hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 8899999999999999999999999975543211 1223445889999999998333 35666666789999999886
Q ss_pred eeeEEEeee-----cc-CCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 554 VGKFKASAF-----RV-AGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~-----~~-~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
......... .| ...|...+|+.++..+.+.+++ .++-|++....
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 543332111 12 2347888888888887777765 56677766543
No 269
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.94 E-value=7.8e-09 Score=102.30 Aligned_cols=244 Identities=18% Similarity=0.284 Sum_probs=149.6
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc------------ccEEEEEEecCCC--EEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YLA 300 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~------------~~V~~l~fspdg~--~La 300 (755)
.+.++++.|...|.+|++|...|+|.++.-.+....-. ....++++|+ ..|..+.|-.++. .++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~cey--kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEY--KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccch--hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 35677899999999999999999999998654431111 1123455554 4688999976553 455
Q ss_pred EEcCCCcEEEEEccCCeee--eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 301 SGGEDGTVRVWKVIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
..+.|.+|++|.+...... .+-..... ..+... ..+.. ......-+.+....++. .
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~----~~~~~~--g~~~s-------~~~l~lprls~hd~iia---------a 161 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDS----FHSPMG--GPLTS-------TKELLLPRLSEHDEIIA---------A 161 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccc----cccccC--CCcCC-------HHHhhcccccccceEEE---------e
Confidence 5678999999998665321 11000000 000000 00000 00000000111111111 1
Q ss_pred ccceEe-cCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCe-EEEEE---ec-----CCcEEEEEEeeCCCCEEEEEe
Q 004410 379 KPLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVF---SH-----NNYVTSVAFNPVDDNYFISGS 448 (755)
Q Consensus 379 ~~~~~~-~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~-~~~~~---~h-----~~~V~~i~fsp~d~~~l~sgs 448 (755)
+|.+.. ..|...|.++.++.+...+.++.|-.|.+|++..-. +.... .| ..-|++..|+|...+.|.-.+
T Consensus 162 ~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs 241 (460)
T COG5170 162 KPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS 241 (460)
T ss_pred ccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence 222222 568888999999999855555678889999986432 22222 12 346899999998888888889
Q ss_pred CCCcEEEEEcCCCeEE-----------------EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCe
Q 004410 449 IDGKVRIWEVRRCQVV-----------------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~~-----------------~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~ 503 (755)
..|.|++-|++...+. .+......|..+.|+++|+++++-+. -+|+|||++..+
T Consensus 242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9999999999853221 01122346788999999999988653 589999998654
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.94 E-value=8e-07 Score=108.65 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=137.5
Q ss_pred CEEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCeEEEEEec-----------------CCcEEEEEEeeCCCCEEEEEeCC
Q 004410 390 EVLDLSWSKNG-FLLSS-SADKTVRLWQVGIDRCLRVFSH-----------------NNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~-s~Dg~V~iWdl~s~~~~~~~~h-----------------~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
....+++.+++ .|+.+ ...+.|+++|..++........ -.....++|+|.++.++++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 45678898876 45444 4557899999877654322110 12346899999566777888888
Q ss_pred CcEEEEEcCCCeEEEeccC---------------CcceEEEEEccCCCeEEE-EeCCCcEEEEECCCCeEeeeeeE----
Q 004410 451 GKVRIWEVRRCQVVDYTDI---------------REIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKDNQLYQQNQI---- 510 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~~---------------~~~V~~v~~spdg~~la~-gs~dg~I~iwD~~~~~~~~~~~~---- 510 (755)
+.|++||..++.+..+.+. -.....|+++|+|+.|++ -+.++.|++||+.++........
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999999988765433211 123567999999985555 45568999999987653211000
Q ss_pred --Ee--cccc-----cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee-----------eccCCceEE
Q 004410 511 --CL--QGKK-----KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA-----------FRVAGSQMF 570 (755)
Q Consensus 511 --~~--~~~~-----~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-----------~~~~~~v~~ 570 (755)
.+ .+.. ........++++++ ++.++++-..++.|++||..+......... ...-.....
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 00 0000 00112346889998 778888888999999999876433221100 011125678
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 571 ATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 571 l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++++++|+.+++-+.++.|++||+.+++
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 9999999999999999999999998865
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.93 E-value=5.5e-08 Score=96.04 Aligned_cols=233 Identities=16% Similarity=0.203 Sum_probs=151.9
Q ss_pred eeEEeeCCCeEEEEECCCCcc--cccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCC
Q 004410 249 ELTLGQRMRRVRVHPVKKQSR--ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD 326 (755)
Q Consensus 249 ~lasgs~dg~V~Vw~~~~~~~--~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~ 326 (755)
.|+-+...|.|.++....... .+..+...+ + ....-.++.|++.+..++++-.+|.+.+-+......
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k-i--~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l-------- 155 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKK-I--SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVL-------- 155 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhh-h--hheeeeEEEeeccCceEEEEcCCCcEEEEecceeee--------
Confidence 455566778888876543211 111111110 0 011245778888888888888888887443322210
Q ss_pred CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEE
Q 004410 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS 404 (755)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s 404 (755)
+.++.++.|.-+.+.+.|+... .+.+
T Consensus 156 ----------------------------------------------------e~vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 156 ----------------------------------------------------EKVQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred ----------------------------------------------------eecccccccceeeeeeecccCCCceEEe
Confidence 1134567899999999998765 8899
Q ss_pred EeCCCcEEEEeCC-CCeEEEE--EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC-CCeEEEeccCCcceEEEEEcc
Q 004410 405 SSADKTVRLWQVG-IDRCLRV--FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVDYTDIREIVSAVCYCP 480 (755)
Q Consensus 405 ~s~Dg~V~iWdl~-s~~~~~~--~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~-~~~~~~~~~~~~~V~~v~~sp 480 (755)
|+.|+.+..||++ .++++.. ..|...|.+|.-+|..+.++++|+.|..|++||.+ -++.+.-....+.|..++.+|
T Consensus 184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p 263 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHP 263 (339)
T ss_pred cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecc
Confidence 9999999999999 4444333 13899999999999788999999999999999999 567776666779999999999
Q ss_pred CC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCCcEE-EE
Q 004410 481 DG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADSLVR-VL 548 (755)
Q Consensus 481 dg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~-iw 548 (755)
.- ..+++++.-.-.+|-++..+... +++.+.. .+.|..-.++-.|.. ....+++++ .|..++ +|
T Consensus 264 ~~~~~lL~~CMh~G~ki~~~~~~~~e--~~~~~~s-~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 264 EIFHRLLAACMHNGAKILDSSDKVLE--FQIVLPS-DKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred hhhhHHHHHHHhcCceEEEecccccc--hheeeec-cccccceeecccccc-ccceeeeeeccccceeeee
Confidence 43 23344444455677777765543 2222222 334555566666644 345677755 344433 44
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=8.1e-08 Score=105.63 Aligned_cols=353 Identities=13% Similarity=0.103 Sum_probs=206.0
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec---CC-CEEEEEcCCCcEEEEEccCCeeeeeee
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DG-QYLASGGEDGTVRVWKVIEHERLDGFD 323 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp---dg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~ 323 (755)
-++|++...|+|.|||....... ..+..|.++|..++|-+ +. .+|+.-....+|.+|+..+|+......
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~-------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVI-------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhh-------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 36778888999999997654432 23677899999999976 33 466666667899999999999888777
Q ss_pred cCCCCCceeEEeeCCCCceeEEeecC-------------cceee-eeeeeecCC--------------------------
Q 004410 324 VQDTDPSCLYFTINHLSQLIPIDVDK-------------EKIDK-TKSLRKSSD-------------------------- 363 (755)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~-~~~~~~~~~-------------------------- 363 (755)
.......|..+-+-+...+......+ ....+ ..+.....+
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence 66655555554444433332221111 00011 111000000
Q ss_pred ------------ceEEEeCCcc--eec-cCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCC------
Q 004410 364 ------------LTCVVLPPKV--FRL-LEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGID------ 419 (755)
Q Consensus 364 ------------~~~~~~~~~~--~~~-~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~------ 419 (755)
...+.++... +++ .+.++....-..+.+.-+.|.|+. .|.+.-.||.+.+|--+..
T Consensus 233 ~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~ 312 (1062)
T KOG1912|consen 233 CAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK 312 (1062)
T ss_pred HHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence 0000011111 000 012222222334455567777876 7888999999999964431
Q ss_pred ----------eEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE----------------------
Q 004410 420 ----------RCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---------------------- 465 (755)
Q Consensus 420 ----------~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---------------------- 465 (755)
.....+. .+-.+......|.+.+.++.--.+|.+.+|.+.+++...
T Consensus 313 ~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v 392 (1062)
T KOG1912|consen 313 PNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLV 392 (1062)
T ss_pred cchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeeh
Confidence 1111111 222233344456445556666668888889887443110
Q ss_pred ----------eccCCcceEEEEEcc-----------CC-------CeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 466 ----------YTDIREIVSAVCYCP-----------DG-------KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 466 ----------~~~~~~~V~~v~~sp-----------dg-------~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
-..|....++....| .| .++|+|+..|+|.++|+.++.+... ..
T Consensus 393 ~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~--------fs 464 (1062)
T KOG1912|consen 393 GKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAAS--------FS 464 (1062)
T ss_pred hhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhh--------hc
Confidence 011223333333322 22 2678999999999999999886543 33
Q ss_pred CCCCCeEEEEEcCCCCCEEEEE---------ECCCcEEEEECCccee-eEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 518 LPGKRITGFQFSPSDPSKVIVT---------SADSLVRVLCGENVVG-KFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~---------s~Dg~I~iwd~~~~~~-~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
.|...|.++.|.. ...++-.+ +.-+.+.|-|+.++.. .++........+|..+..|..|+||+..-.|.
T Consensus 465 vht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~ 543 (1062)
T KOG1912|consen 465 VHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRRE 543 (1062)
T ss_pred ccccceeeeeecc-ceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEeccc
Confidence 4677888888875 33333222 1224466777776543 34433345667899999999999999999999
Q ss_pred cEEEEEcCCCCcccCCCccccceeeeecCCeEEEEcCC
Q 004410 588 NIYIWNYSNQDKSSSRSKSIWSCESFLSHNVSVAIPWV 625 (755)
Q Consensus 588 ~I~iWd~~~~~~~~~~~~~~~~~~~f~~~~~~va~~w~ 625 (755)
-+-|||+++-.......+. + +...++.|.
T Consensus 544 plEiwd~kt~~~lr~mS~a---~------P~it~leWs 572 (1062)
T KOG1912|consen 544 PLEIWDLKTLRMLRLMSLA---L------PLITVLEWS 572 (1062)
T ss_pred chHHHhhccchHHHHHhhc---C------CcEEEEeec
Confidence 9999999776532222221 1 445677786
No 273
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=3.5e-07 Score=97.86 Aligned_cols=278 Identities=17% Similarity=0.239 Sum_probs=165.6
Q ss_pred cceeecCCCCeeEEe-----eC-----CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 239 GSATLKPGDHELTLG-----QR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 239 ~~~~~spdg~~lasg-----s~-----dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
..+-|+|-|.+|.+- .. .-.+++|++.+ ...... ++.....=|++.|++|..+.|-- ..+.|
T Consensus 77 ~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet-~~~~s~------~q~k~Q~~W~~qfs~dEsl~arl-v~nev 148 (566)
T KOG2315|consen 77 YDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET-GVQRSQ------IQKKMQNGWVPQFSIDESLAARL-VSNEV 148 (566)
T ss_pred eeeeecccccccccccccccccCCCCCCCceeeeeecc-ceehhh------eehhhhcCcccccccchhhhhhh-hcceE
Confidence 346777777777652 11 23477998776 221111 22222222799999987654332 34579
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCc-eeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccc--eEec
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ-LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL--HEFQ 385 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 385 (755)
++|++.+.+.+. -..+...+....+++..... ++...... ++....+.++.... .....++ .+|
T Consensus 149 ~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~----------kGaPa~vri~~~~~-~~~~~~~a~ksF- 215 (566)
T KOG2315|consen 149 QFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEK----------KGAPASVRIYKYPE-EGQHQPVANKSF- 215 (566)
T ss_pred EEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCC----------CCCCcEEEEecccc-ccccchhhhccc-
Confidence 999987643221 11222333334444442222 22111111 11111222221110 0000111 111
Q ss_pred CCCCCEEEEEEcCCC--eEE--EEeCCC---------cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEE--EeCC
Q 004410 386 GHSSEVLDLSWSKNG--FLL--SSSADK---------TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS--GSID 450 (755)
Q Consensus 386 gh~~~V~~l~~s~~~--~L~--s~s~Dg---------~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~s--gs~D 450 (755)
....-..+.|++-| .|+ +..-|+ ++++.++....+...+...++|.++.|+| +++-|++ |-.=
T Consensus 216 -Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~-s~~EF~VvyGfMP 293 (566)
T KOG2315|consen 216 -FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSP-SGREFAVVYGFMP 293 (566)
T ss_pred -cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECC-CCCEEEEEEeccc
Confidence 12333458898877 333 333343 68888888777777777899999999999 7776654 5566
Q ss_pred CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC---CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~---dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
.++.|+|++..-+..+ ..++-.++-|+|.|++|+.++- .|.+-|||+.+.+++..+. ...-+-+.
T Consensus 294 Akvtifnlr~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----------a~~tt~~e 361 (566)
T KOG2315|consen 294 AKVTIFNLRGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----------AANTTVFE 361 (566)
T ss_pred ceEEEEcCCCCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----------cCCceEEE
Confidence 7899999987665543 3456678999999999998775 4789999999977664322 23456789
Q ss_pred EcCCCCCEEEEEEC------CCcEEEEECCc
Q 004410 528 FSPSDPSKVIVTSA------DSLVRVLCGEN 552 (755)
Q Consensus 528 fsp~d~~~l~s~s~------Dg~I~iwd~~~ 552 (755)
|+| |+.++++++. |+.++||+...
T Consensus 362 W~P-dGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 362 WSP-DGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EcC-CCcEEEEEeccccEEecCCeEEEEecC
Confidence 999 8888888765 68888998653
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=5.2e-06 Score=87.07 Aligned_cols=188 Identities=16% Similarity=0.159 Sum_probs=140.3
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCeEEEEE-e--------c---CCcEEEEE-EeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVF-S--------H---NNYVTSVA-FNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 397 s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~--------h---~~~V~~i~-fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
+.||.-+.-++-|.|.+||..+....+.- . . ..+..-+. |++.++++++..| .|+..|.+.-.+-.
T Consensus 275 nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~ 353 (668)
T COG4946 275 NSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYS 353 (668)
T ss_pred CCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCee
Confidence 44664444566688999998876554322 1 0 01111122 5556788888887 47888888777766
Q ss_pred EEeccCCcceEEEEEccCCCeEEEEeCCC-cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~la~gs~dg-~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
++. ++...|.-..+.-+++.++.|..|| .+-|||..++.... ....-+.|.++..+| ++++++++...
T Consensus 354 iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr---------~e~~lg~I~av~vs~-dGK~~vvaNdr 422 (668)
T COG4946 354 IQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR---------IEKDLGNIEAVKVSP-DGKKVVVANDR 422 (668)
T ss_pred EEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE---------eeCCccceEEEEEcC-CCcEEEEEcCc
Confidence 664 4455588888888999999999999 79999999987543 223457899999999 99999999999
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC----cEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS----NIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg----~I~iWd~~~~~ 598 (755)
..|.++|+.+...+..- ....+-|+...|+|++++||-+--+| .|+++|+.+++
T Consensus 423 ~el~vididngnv~~id--kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 423 FELWVIDIDNGNVRLID--KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred eEEEEEEecCCCeeEec--ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 99999999887666554 44567899999999999999887665 58999998876
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.89 E-value=1e-06 Score=107.70 Aligned_cols=267 Identities=10% Similarity=0.067 Sum_probs=161.0
Q ss_pred ceeecCC-CCeeEEeeCCCeEEEEECCCCccccccccccee------eecccccEEEEEEecCCCEEEEEc-CCCcEEEE
Q 004410 240 SATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQE------FLAHEGSILTMKFSLDGQYLASGG-EDGTVRVW 311 (755)
Q Consensus 240 ~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~------l~~H~~~V~~l~fspdg~~LaSgs-~Dg~I~vW 311 (755)
.++++++ +.++++-..+++|++++...............- -.++-.....|+++++++.|+.+. ..+.|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 4888875 557777778899999997543211000000000 011223457899999888665554 45689999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
|+.++.. ..+........ .. .+... ..... ...-
T Consensus 652 d~~~~~V-~tlag~G~~g~---------------~~-----------~gg~~---------------~~~~~----ln~P 685 (1057)
T PLN02919 652 DFVNETV-RTLAGNGTKGS---------------DY-----------QGGKK---------------GTSQV----LNSP 685 (1057)
T ss_pred ecCCCEE-EEEeccCcccC---------------CC-----------CCChh---------------hhHhh----cCCC
Confidence 9866542 22211000000 00 00000 00000 1123
Q ss_pred EEEEEcC-CC-eEEEEeCCCcEEEEeCCCCeEEEEEe---------------cCCcEEEEEEeeCCCC-EEEEEeCCCcE
Q 004410 392 LDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS---------------HNNYVTSVAFNPVDDN-YFISGSIDGKV 453 (755)
Q Consensus 392 ~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---------------h~~~V~~i~fsp~d~~-~l~sgs~Dg~V 453 (755)
.++++++ ++ .+++.+.++.|++||..++....... .-.....|+++| +++ ++++-+.++.|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeE
Confidence 5789999 45 66677788999999998776542211 012456799999 776 66667778999
Q ss_pred EEEEcCCCeEEEecc----------------------CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 454 RIWEVRRCQVVDYTD----------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 454 ~iwdl~~~~~~~~~~----------------------~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
++||+.++......+ .-.....++++++|..+++-+.++.|++||..++.........
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 999998765321110 0112468999999998888888999999999987665321100
Q ss_pred eccc-----ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce
Q 004410 512 LQGK-----KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV 554 (755)
Q Consensus 512 ~~~~-----~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~ 554 (755)
..+. .........++++++ +++++++-+.++.|++||..+..
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECCCCc
Confidence 0000 111224578899999 78888888899999999987643
No 276
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=7.8e-06 Score=83.81 Aligned_cols=261 Identities=14% Similarity=0.213 Sum_probs=163.0
Q ss_pred cCcceeecCCCCeeEEeeC---CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CCcEEEEE
Q 004410 237 RHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWK 312 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~---dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWd 312 (755)
..+-++|+|+++.|.++.. .|.|-.|.+......+..+.. +.+.++. -..++++++|++|+++.. -|.|.|+-
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-~~~~g~~--p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-QTLPGSP--PCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-cccCCCC--CeEEEECCCCCEEEEEEccCceEEEEE
Confidence 3444999999999988765 478888888765333432222 2233322 278999999999999875 46889988
Q ss_pred ccCCeeeeee-ecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 313 VIEHERLDGF-DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 313 v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
+++...+... ... ...+.-.+ .+.-..-+
T Consensus 118 ~~~dG~l~~~v~~~-------------------------------------------------~h~g~~p~-~rQ~~~h~ 147 (346)
T COG2706 118 LQADGSLQPVVQVV-------------------------------------------------KHTGSGPH-ERQESPHV 147 (346)
T ss_pred cccCCccccceeee-------------------------------------------------ecCCCCCC-ccccCCcc
Confidence 8653221110 000 00000000 01111226
Q ss_pred EEEEEcCCC-eEEEEeC-CCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEEcCC--Ce
Q 004410 392 LDLSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRR--CQ 462 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~-Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~~~l~s-gs~Dg~V~iwdl~~--~~ 462 (755)
....+.|++ +|++..- --.|.+|++..+++...- .....-..|.|+| ++++.+. .-.+++|-+|.... ++
T Consensus 148 H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 148 HSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred ceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCce
Confidence 778899999 6665542 235899999877654332 3567789999999 8888755 45689999999887 33
Q ss_pred EEEec---------cCCcceEEEEEccCCCeEEEEeC-CCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 463 VVDYT---------DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 463 ~~~~~---------~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
...+. ......-+|.++|||++|.++.. ...|.+|.+. ++++... .....++..-..+.|+|
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~------~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV------GITPTEGQFPRDFNINP 300 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE------EEeccCCcCCccceeCC
Confidence 32221 22345778999999999988653 2357777665 3443322 22333444567899999
Q ss_pred CCCCEEEEEEC-CCcEEEEECCcceeeEE
Q 004410 531 SDPSKVIVTSA-DSLVRVLCGENVVGKFK 558 (755)
Q Consensus 531 ~d~~~l~s~s~-Dg~I~iwd~~~~~~~~~ 558 (755)
++++|+++.. ...|.+|........+.
T Consensus 301 -~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 301 -SGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred -CCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 6777766655 45788887765544443
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.80 E-value=4.1e-06 Score=91.98 Aligned_cols=298 Identities=14% Similarity=0.088 Sum_probs=167.9
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecC
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
.+..+++++.+|.|..+|..++..... ......+ .. ... .++..++.++.++.|..+|..+|+.+......
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~-~~~~~~~---~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWR-VDLDERL---SG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeee-ecCCCCc---cc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence 366788888889999998765543222 1111111 11 122 24677888889999999999999887665433
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE-----EEEEEcCCC
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV-----LDLSWSKNG 400 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V-----~~l~~s~~~ 400 (755)
........ . .....+....++.+..++.+..+. +.++......+ ...... ++
T Consensus 135 ~~~~~~p~-------------v-----~~~~v~v~~~~g~l~a~d~~tG~~----~W~~~~~~~~~~~~~~~sp~~~-~~ 191 (377)
T TIGR03300 135 SEVLSPPL-------------V-----ANGLVVVRTNDGRLTALDAATGER----LWTYSRVTPALTLRGSASPVIA-DG 191 (377)
T ss_pred ceeecCCE-------------E-----ECCEEEEECCCCeEEEEEcCCCce----eeEEccCCCceeecCCCCCEEE-CC
Confidence 21000000 0 001112223344455554432211 11111111000 001111 34
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCC-----c---EEEEEEee-CCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNN-----Y---VTSVAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~-----~---V~~i~fsp-~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~ 471 (755)
.++.+..++.+..+|+.+++.+....... . +..+.-.| ..+..++.++.+|.++.||..+++.+.......
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~ 271 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS 271 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC
Confidence 67778888999999999998765442110 0 00010011 134678888889999999999988764332221
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
..... .++..+++++.+|.++.+|..+++.+..... + .......... .+..|++++.+|.|+++|..
T Consensus 272 -~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-~------~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 272 -YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDE-L------KYRQLTAPAV---VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred -ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccc-c------cCCccccCEE---ECCEEEEEeCCCEEEEEECC
Confidence 11222 3567888889999999999999987643210 0 1111122222 34688899999999999988
Q ss_pred cceeeEEEeeeccCCce-EEEEEecCCCEEEEEeCCCcEEEE
Q 004410 552 NVVGKFKASAFRVAGSQ-MFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 552 ~~~~~~~~~~~~~~~~v-~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
+........ .+...+ .+..+. + ..|+.++.||.|+.|
T Consensus 339 tG~~~~~~~--~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 DGSFVARLK--TDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEE--cCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 766555442 222222 223332 3 458899999999876
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.80 E-value=1e-05 Score=84.99 Aligned_cols=275 Identities=10% Similarity=0.144 Sum_probs=176.2
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC-cEEEEEccCCeeeeeeec
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg-~I~vWdv~~~~~~~~~~~ 324 (755)
+|.++|..+. |...|.+...+. . .-.+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~-------~--iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~------ 394 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGY-------S--IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV------ 394 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCe-------e--EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE------
Confidence 4566666555 445554422111 1 1246888899999988888999999999 899999877752
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~ 403 (755)
..+.+.-+.|.++..+++| +++
T Consensus 395 ---------------------------------------------------------kr~e~~lg~I~av~vs~dGK~~v 417 (668)
T COG4946 395 ---------------------------------------------------------KRIEKDLGNIEAVKVSPDGKKVV 417 (668)
T ss_pred ---------------------------------------------------------EEeeCCccceEEEEEcCCCcEEE
Confidence 2344566789999999999 788
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCC----cEEEEEcCCCeEEEeccCCcceEEEEE
Q 004410 404 SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVVDYTDIREIVSAVCY 478 (755)
Q Consensus 404 s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg----~V~iwdl~~~~~~~~~~~~~~V~~v~~ 478 (755)
.+.....|.+.|+.+++....-+ ..+-|+.++|+| +.+++|-+--+| .|+++|+.+++..........-.+-+|
T Consensus 418 vaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaF 496 (668)
T COG4946 418 VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAF 496 (668)
T ss_pred EEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCccc
Confidence 88888889999999998755443 678899999999 999999877665 699999999999887777776778899
Q ss_pred ccCCCeEEEEeCC---Cc--EEEEECCCCeEeeeeeEEeccccc-----------CC---------CCCeEEEEEcCCCC
Q 004410 479 CPDGKGGIVGTMT---GN--CRFYDIKDNQLYQQNQICLQGKKK-----------LP---------GKRITGFQFSPSDP 533 (755)
Q Consensus 479 spdg~~la~gs~d---g~--I~iwD~~~~~~~~~~~~~~~~~~~-----------~~---------~~~I~~v~fsp~d~ 533 (755)
.|||++|..-+.. -. =.+++..-........+.+..... .. ...+.-+-..+ ..
T Consensus 497 D~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee-~d 575 (668)
T COG4946 497 DPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEE-GD 575 (668)
T ss_pred CCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCc-cc
Confidence 9999988665431 11 112222211111111111110000 00 00111111122 22
Q ss_pred CEEEEEECCCcEEEEECC------------cce---eeEEEe---eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 534 SKVIVTSADSLVRVLCGE------------NVV---GKFKAS---AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~------------~~~---~~~~~~---~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
...+++-.+|.|.++... ... .++... .......+.++..|+||++|+. -.||.+++++++
T Consensus 576 Y~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~ve 654 (668)
T COG4946 576 YRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVE 654 (668)
T ss_pred eeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEecc
Confidence 344455556666665421 000 011110 0113457889999999999998 889999999998
Q ss_pred C
Q 004410 596 N 596 (755)
Q Consensus 596 ~ 596 (755)
.
T Consensus 655 k 655 (668)
T COG4946 655 K 655 (668)
T ss_pred c
Confidence 6
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.78 E-value=2.7e-08 Score=117.97 Aligned_cols=190 Identities=17% Similarity=0.182 Sum_probs=152.6
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
.|-..|.++.-+|.. +.++|+.||.|++|.-..++.+..+. .+..|+.+.|+. .|+.+..+..||.+.+|.+....
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCCcc
Confidence 355678888888887 89999999999999999998888885 458899999998 89999999999999999999777
Q ss_pred EEEeccCCcceEEEEEccCCCeEEEEe---CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 463 VVDYTDIREIVSAVCYCPDGKGGIVGT---MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~la~gs---~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
...+..|....+.+.|-. ..+++++ .++.+.+||..-.....- ....|....+++++.| ....+++|
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~-------v~~~H~~gaT~l~~~P-~~qllisg 2354 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL-------VHTCHDGGATVLAYAP-KHQLLISG 2354 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce-------eeeecCCCceEEEEcC-cceEEEec
Confidence 778888999888888865 5666643 467899999764332211 1256888999999999 89999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.+|.|.+||+...... |.-.. +. ...++++|+..|.|+||++....
T Consensus 2355 gr~G~v~l~D~rqrql~-------h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLR-------HTFQA----LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred CCcCcEEEeehHHHHHH-------HHhhh----hh-hhheeeccCcccceEEEEccccc
Confidence 99999999998753322 21111 33 56799999999999999998764
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=2e-08 Score=106.01 Aligned_cols=246 Identities=15% Similarity=0.246 Sum_probs=163.1
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+.+.||+..|..++--.+.+-+++++.|++|++|.+..... ....
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-------~~~t---------------------------- 773 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-------EIGT---------------------------- 773 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-------cccc----------------------------
Confidence 45789999999998777788899999999999999854310 0000
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTS 433 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~ 433 (755)
.....++..|+.+|.++.|-.+. +++ +.|+.|++||.-.+..+.... ..+.+..
T Consensus 774 --------------------saCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ 831 (1034)
T KOG4190|consen 774 --------------------SACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGN 831 (1034)
T ss_pred --------------------ceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCce
Confidence 11234667899999999998876 544 568999999987777765331 2233333
Q ss_pred EEEeeC-CCCEEEEE-eCCCcEEEEEcCCCeEE-Ee-----ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 434 VAFNPV-DDNYFISG-SIDGKVRIWEVRRCQVV-DY-----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 434 i~fsp~-d~~~l~sg-s~Dg~V~iwdl~~~~~~-~~-----~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
+..-|. +..+++.| +...+|+++|.+.+..+ .+ ......+.+++..+.|+.++++-.+|.|.+.|.++|+.+
T Consensus 832 ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 832 IKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred eEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 333332 44555554 78899999999987655 22 233456899999999999999999999999999999876
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE-EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV-LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i-wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
..+.. ....+..++ .| ....++....|..+.| |...+....++. .....+..-+ -.-|.-|+++.
T Consensus 912 Nswrp--------mecdllqla-ap-sdq~L~~saldHslaVnWhaldgimh~q~--kpppepahfl--qsvgpSLV~a~ 977 (1034)
T KOG4190|consen 912 NSWRP--------MECDLLQLA-AP-SDQALAQSALDHSLAVNWHALDGIMHLQD--KPPPEPAHFL--QSVGPSLVTAQ 977 (1034)
T ss_pred ccCCc--------ccchhhhhc-Cc-hhHHHHhhcccceeEeeehhcCCeeeecc--CCCCcchhhh--hccCceeEEec
Confidence 43221 011111111 23 4566777777888888 876555444433 1111111111 12366788887
Q ss_pred CCCcEEEEEc
Q 004410 585 EDSNIYIWNY 594 (755)
Q Consensus 585 ~Dg~I~iWd~ 594 (755)
....+.+|.-
T Consensus 978 ~Gn~lgVYad 987 (1034)
T KOG4190|consen 978 NGNILGVYAD 987 (1034)
T ss_pred cCcEEEEEec
Confidence 7778888864
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.76 E-value=2.4e-06 Score=90.47 Aligned_cols=308 Identities=14% Similarity=0.117 Sum_probs=177.0
Q ss_pred cCcceeecCCCCeeEEeeCCC---------------eEEEEECCCCcccccccccceeeecccccEE-EEEEecCCCEEE
Q 004410 237 RHGSATLKPGDHELTLGQRMR---------------RVRVHPVKKQSRELSSLYTGQEFLAHEGSIL-TMKFSLDGQYLA 300 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg---------------~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~-~l~fspdg~~La 300 (755)
.+..+.|+|.+++|.+-.... .+.|||+..+.....-.... .....+ -++|+-+..|+|
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~-----q~~~~Wp~~k~s~~D~y~A 147 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS-----QPYLGWPVLKFSIDDKYVA 147 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccC-----Ccccccceeeeeecchhhh
Confidence 355588999999998765443 38999987665433321111 112255 688999988887
Q ss_pred EEcCCCcEEEEEccCCeee-eeeecCC-CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 301 SGGEDGTVRVWKVIEHERL-DGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
-.. ...++|+++ ++... ..+.... .......+++.+.... .+.+...+ ......+.++.... .
T Consensus 148 Rvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~-la~~tPEk--------~~kpa~~~i~sIp~----~ 212 (561)
T COG5354 148 RVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDE-LAYWTPEK--------LNKPAMVRILSIPK----N 212 (561)
T ss_pred hhc-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCce-EEEEcccc--------CCCCcEEEEEEccC----C
Confidence 663 347999997 33211 1111100 1111112222211111 01111111 11112222221110 1
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEe-----------CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEE
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSS-----------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS 446 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s-----------~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~s 446 (755)
.++.+-.-....=..+.|++.| +|+.-- ....++|+++....+-......++|...+|.| .++.|++
T Consensus 213 s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p-~S~~F~v 291 (561)
T COG5354 213 SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEP-LSSRFAV 291 (561)
T ss_pred CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecc-cCCceeE
Confidence 1111111111122457888888 333211 12457888887444433335689999999999 6665544
Q ss_pred --EeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC---CcEEEEECCCCeEeeeeeEEecccccCCCC
Q 004410 447 --GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 447 --gs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d---g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~ 521 (755)
|..+..+.++|++.. +.+......=..+.|+|.++++++++-+ |.+.+||..+....... ....
T Consensus 292 i~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~---------~~~~ 360 (561)
T COG5354 292 ISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGA---------FNGL 360 (561)
T ss_pred Eecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEE---------eecC
Confidence 457889999999987 3334444555678899999999997765 67999999877654311 1123
Q ss_pred CeEEEEEcCCCCCEEEEEE------CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 522 RITGFQFSPSDPSKVIVTS------ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
...-+.|+| |+.++.+.. .|..|.|||+.... + ...+.+.|.|.|++..+.+.+.
T Consensus 361 n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~---------~-fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 361 NTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAK---------V-FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CceEeeccC-CceEEEecCCCcccccCcceEEEEecCch---------h-hhhhhccccCCcccceeeccCC
Confidence 445578999 888777764 37889999865311 1 1456788999999988887765
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=3e-06 Score=93.66 Aligned_cols=191 Identities=12% Similarity=0.125 Sum_probs=126.9
Q ss_pred CEEEEEEcCCC-e-EEEEeCC---CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEE-EeCC--CcEEEEEcCCC
Q 004410 390 EVLDLSWSKNG-F-LLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS-GSID--GKVRIWEVRRC 461 (755)
Q Consensus 390 ~V~~l~~s~~~-~-L~s~s~D---g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~s-gs~D--g~V~iwdl~~~ 461 (755)
.+....|+|+| . ++..+.+ ..|.++|+.+++........+.+....|+| |++.++. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 67789999999 4 5544433 569999999998877666667777889999 8876654 4334 46888899888
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeCC-C--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMT-G--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
....+...........|+|||+.|+..+.. | .|+++|+.++...... ..+ . ....|+| +++.|+.
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt---~~g------~--~~~~~SP-DG~~Ia~ 335 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV---FHG------K--NNSSVST-YKNYIVY 335 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc---cCC------C--cCceECC-CCCEEEE
Confidence 877666655545567899999988877643 3 5888888887653211 111 1 1248999 7777766
Q ss_pred EECC---------CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC---cEEEEEcCCC
Q 004410 539 TSAD---------SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS---NIYIWNYSNQ 597 (755)
Q Consensus 539 ~s~D---------g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg---~I~iWd~~~~ 597 (755)
.... ..|.+.|.......... .........|+|||+.|+..+.++ .|.+.+++..
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT----~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIRRLT----ANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeEECC----CCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 6543 25777776654322211 112334688999999887766432 3666666544
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.75 E-value=6.2e-08 Score=99.77 Aligned_cols=81 Identities=23% Similarity=0.556 Sum_probs=71.1
Q ss_pred EecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
.+.||-+.+++++|+||+ +++++..|..|++-....-..+..| +|...|..++.-+ +..|++|+.|++|++||+.
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEecc
Confidence 346899999999999999 9999999999999888766666655 6999999999975 5669999999999999999
Q ss_pred CCeEEE
Q 004410 460 RCQVVD 465 (755)
Q Consensus 460 ~~~~~~ 465 (755)
+++.+.
T Consensus 224 sgk~L~ 229 (390)
T KOG3914|consen 224 SGKLLD 229 (390)
T ss_pred cCCccc
Confidence 998774
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.75 E-value=5e-06 Score=82.76 Aligned_cols=187 Identities=16% Similarity=0.243 Sum_probs=117.0
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--------cCCcEEEEEEeeCC-----CCEEEEEeCCCcEEEE
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVD-----DNYFISGSIDGKVRIW 456 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--------h~~~V~~i~fsp~d-----~~~l~sgs~Dg~V~iw 456 (755)
=..++|+||+ .||.+...|+|+++|+....+. .+. ....|..+.|.+.. ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4569999999 8889999999999999764443 332 34567777786532 2357777788888877
Q ss_pred EcCCC-----eE---EEe-ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 457 EVRRC-----QV---VDY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 457 dl~~~-----~~---~~~-~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
-+..+ +. ..+ ......|.++.|+|..++|++|+.... .++ ........+++-.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~------------~s~a~~~GLtaWR 186 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG------------MSKASSCGLTAWR 186 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc------------cccccccCceEEE
Confidence 76322 11 112 234678999999999998888775432 000 0111223444444
Q ss_pred EcCCCCCEEEEEECCCcE-------EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 528 FSPSDPSKVIVTSADSLV-------RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I-------~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+..+.+.+..+...+..+ .+|.+.+. .+..........|..+..||||..||+...+|.|.+|++.+-+
T Consensus 187 iL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 187 ILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF--KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EcCCCCcEEEccccCccccccccccceeeccce--eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 443333333333332222 12222211 1111112356789999999999999999999999999998765
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=1e-06 Score=97.12 Aligned_cols=282 Identities=13% Similarity=0.181 Sum_probs=185.2
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC------------CEEEEEcCC
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG------------QYLASGGED 305 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg------------~~LaSgs~D 305 (755)
..++.|+|.|- +|.|+.. .|.|-|.. .+...|.+.-|...|+.++|.|-. -+||++...
T Consensus 18 ~~A~Dw~~~GL-iAygshs-lV~VVDs~-------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 18 RNAADWSPSGL-IAYGSHS-LVSVVDSR-------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred ccccccCccce-EEEecCc-eEEEEehh-------hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 44578888874 4666654 46666633 344567788899999999998731 267888889
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|.+||+..+.. +..+.
T Consensus 89 GrIil~d~~~~s~--------------------------------------------------------------~~~l~ 106 (1062)
T KOG1912|consen 89 GRIILVDFVLASV--------------------------------------------------------------INWLS 106 (1062)
T ss_pred CcEEEEEehhhhh--------------------------------------------------------------hhhhc
Confidence 9999999876542 23345
Q ss_pred CCCCCEEEEEEcCCC-----eEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 386 GHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGIDRCLRVFSH-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-----~L~s~s~Dg~V~iWdl~s~~~~~~~~h-~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
.|...|.+++|-+.. .|++.....+|.+|+..+|+..-.+.. .....|+.+.|.+.+.|..-+..|.|.+-+.-
T Consensus 107 ~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 107 HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 677888889987632 677777889999999999998877753 44567799999998988888888888887653
Q ss_pred C-------CeEEEe-ccCCc------------c-------------eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 460 R-------CQVVDY-TDIRE------------I-------------VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 460 ~-------~~~~~~-~~~~~------------~-------------V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
. ++..+. .+|.+ . .-.++|+|.-+.++.......+.++|++-...+.
T Consensus 187 ~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~ 266 (1062)
T KOG1912|consen 187 GLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLA 266 (1062)
T ss_pred CCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeE
Confidence 2 222221 11111 0 1235678877777777888899999998776665
Q ss_pred eeeEEecccccCCCCCeEEEEEcCC-CCCEEEEEECCCcEEEEECCcceeeEEEeee----ccCCceEEE----------
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPS-DPSKVIVTSADSLVRVLCGENVVGKFKASAF----RVAGSQMFA---------- 571 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~-d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~----~~~~~v~~l---------- 571 (755)
...+ ..+.+.-+.+-|+ ....+++...||.+.+|-.......++.... .....+..+
T Consensus 267 vvpi--------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~ 338 (1062)
T KOG1912|consen 267 VVPI--------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVI 338 (1062)
T ss_pred EEEe--------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccce
Confidence 4433 2234445667663 3347888899999999975543222222100 001111111
Q ss_pred -EEecC-CCEEEEEeCCCcEEEEEcCCCC
Q 004410 572 -TFTSD-GKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 572 -~fspd-g~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...|. ...++.--.+|.+.+|.+.+++
T Consensus 339 ~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 339 GASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred eecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 11222 3334444457889999999876
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=4.2e-06 Score=92.44 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=89.4
Q ss_pred CCEEEEEEcCCC-eEE-EEeCC--CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CC--cEEEEEcCCC
Q 004410 389 SEVLDLSWSKNG-FLL-SSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~-s~s~D--g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg--~V~iwdl~~~ 461 (755)
+......|+||| .|+ +.+.+ ..|.++|+.+++......+........|+| |++.|+..+. .+ .|.++|+.++
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 344556799999 444 34333 568888988887655444444445678999 8887666553 33 5888899888
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeCC---------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMT---------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~d---------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+...+...... ...|+|||+.|+..... ..|.++|+.++.... +.. ........|+| |
T Consensus 312 ~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-----LT~-----~~~~~~p~~SP-D 378 (419)
T PRK04043 312 SVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-----LTA-----NGVNQFPRFSS-D 378 (419)
T ss_pred CeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-----CCC-----CCCcCCeEECC-C
Confidence 77544332222 24899999999877654 268888988876532 111 11223478999 7
Q ss_pred CCEEEEEEC
Q 004410 533 PSKVIVTSA 541 (755)
Q Consensus 533 ~~~l~s~s~ 541 (755)
++.|+....
T Consensus 379 G~~I~f~~~ 387 (419)
T PRK04043 379 GGSIMFIKY 387 (419)
T ss_pred CCEEEEEEc
Confidence 776666554
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=5.3e-05 Score=77.84 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=119.8
Q ss_pred EEEEEEc-CCCeEEEEeCCCcEEEEeCCCCeEEEEEe------cCCcEEEEEEeeCCCCEEEEEeCC--------CcEEE
Q 004410 391 VLDLSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSID--------GKVRI 455 (755)
Q Consensus 391 V~~l~~s-~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~------h~~~V~~i~fsp~d~~~l~sgs~D--------g~V~i 455 (755)
...+++. +++.|+.+...+ +.++|..+++...... .....+.+++.| ++++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 5667777 677777666644 5566999987655553 345688999999 89988776644 56777
Q ss_pred EEcCCCeEEEeccCCcceEEEEEccCCCeEEE-EeCCCcEEEEECCCCeE-eeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 456 WEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 456 wdl~~~~~~~~~~~~~~V~~v~~spdg~~la~-gs~dg~I~iwD~~~~~~-~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
++.. +++......-.....|+|+|+++.|++ -+..+.|..|++..... +........ ........-++++.. ++
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~g~pDG~~vD~-~G 195 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID--FPGGPGYPDGLAVDS-DG 195 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE---SSSSCEEEEEEEBT-TS
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE--cCCCCcCCCcceEcC-CC
Confidence 8877 565554445566789999999998764 56678899999864322 211111110 111113478899998 88
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe-cCCCEEEEEe
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT-SDGKHVVSPS 584 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs-pdg~~L~sgs 584 (755)
++.++....+.|.+++... ....... .. ...+++++|. ++.+.|+..+
T Consensus 196 ~l~va~~~~~~I~~~~p~G-~~~~~i~-~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPDG-KLLREIE-LP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -EEEEEETTTEEEEEETTS-CEEEEEE--S-SSSEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEcCCCEEEEECCCc-cEEEEEc-CC-CCCEEEEEEECCCCCEEEEEe
Confidence 8888888899999999773 3222221 22 3488999994 6766655443
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.66 E-value=1.5e-07 Score=93.38 Aligned_cols=246 Identities=17% Similarity=0.205 Sum_probs=149.1
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
...|+++.|...|.||++|...|.|.++.-....- -++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-cey----------------------------------------- 63 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-CEY----------------------------------------- 63 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc-cch-----------------------------------------
Confidence 46799999999999999999999999986432210 000
Q ss_pred ceEEEeCCcceeccCccceEecCC------------CCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCCeEEEEEe--
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGH------------SSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-- 426 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh------------~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~~~~~~~~-- 426 (755)
+-..+|++| ...|..+.|..++ .++..+.|++|++|.+.......+-.
T Consensus 64 ---------------kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nn 128 (460)
T COG5170 64 ---------------KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENN 128 (460)
T ss_pred ---------------hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccc
Confidence 001122222 2357788888765 78888999999999986553321111
Q ss_pred --------cCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEE
Q 004410 427 --------HNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (755)
Q Consensus 427 --------h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iw 497 (755)
..+++++..-. .+--.+ .|..|.. ....+....|...|.++.|..|...++++ .|=.|.+|
T Consensus 129 ls~~~~~~~~g~~~s~~~l-----~lprls~hd~iiaa----~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLW 198 (460)
T COG5170 129 LSDSFHSPMGGPLTSTKEL-----LLPRLSEHDEIIAA----KPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLW 198 (460)
T ss_pred cccccccccCCCcCCHHHh-----hcccccccceEEEe----ccceeccccceeEeeeeeecCchheeeec-cceeeeec
Confidence 11222111000 000000 0111111 11122335677889999999998877774 47789999
Q ss_pred ECCCCeEeeeeeEEecc-cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc-----eee-EEEe--------ee
Q 004410 498 DIKDNQLYQQNQICLQG-KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV-----VGK-FKAS--------AF 562 (755)
Q Consensus 498 D~~~~~~~~~~~~~~~~-~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~-----~~~-~~~~--------~~ 562 (755)
++.--..-..+. .+.. ....-..-|++..|+|.....++..+..|.|++-|++.. ..+ +... ..
T Consensus 199 nl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~ 277 (460)
T COG5170 199 NLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFE 277 (460)
T ss_pred cccccCCceEEE-eccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHH
Confidence 887432211110 0111 011112358889999988889999999999999997731 111 1100 01
Q ss_pred ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 563 RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 563 ~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.....|..+.|+++|+||++-+. -+|+|||++..+
T Consensus 278 eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 278 EIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred HHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 23457888999999999998765 489999998876
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.65 E-value=8e-08 Score=105.01 Aligned_cols=197 Identities=19% Similarity=0.299 Sum_probs=135.5
Q ss_pred cccccccccceeeeeccCcceeecCC--CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-C
Q 004410 221 KRGWLKKLGAMARIIDRHGSATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-Q 297 (755)
Q Consensus 221 ~~~w~~~~~~~~~~~~~~~~~~~spd--g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~ 297 (755)
.+.|+.++.. -.+..+.|+|. ..+-++......-.||.+.+..... ..-.+.+|..+|+.+.|.|.. .
T Consensus 58 ppr~l~h~tp-----w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a----Ief~lhghsraitd~n~~~q~pd 128 (1081)
T KOG0309|consen 58 PPRWLHHITP-----WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA----IEFVLHGHSRAITDINFNPQHPD 128 (1081)
T ss_pred CceeeeccCc-----chhcceecccCCCCceeEEecCcchhhhhhhhcCCccc----eEEEEecCccceeccccCCCCCc
Confidence 3456665542 22334556554 3455566667778889876543221 122478999999999999854 5
Q ss_pred EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceecc
Q 004410 298 YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (755)
Q Consensus 298 ~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (755)
.||+++.|-.|..||+.+...
T Consensus 129 Vlatcsvdt~vh~wd~rSp~~----------------------------------------------------------- 149 (1081)
T KOG0309|consen 129 VLATCSVDTYVHAWDMRSPHR----------------------------------------------------------- 149 (1081)
T ss_pred ceeeccccccceeeeccCCCc-----------------------------------------------------------
Confidence 899999999999999866432
Q ss_pred CccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe-EEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 378 ~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~-~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
|+..+..-......++|+-.. .+++.+..+.|++||++.+. ++..+ +|...|+.++|+......+.+.+.||+|+
T Consensus 150 --p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 150 --PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred --ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 122222223344568888755 77778888999999998764 34444 38888999999876677899999999999
Q ss_pred EEEcCCCeE--EEeccCCcceEEEEEccCCCeEEE
Q 004410 455 IWEVRRCQV--VDYTDIREIVSAVCYCPDGKGGIV 487 (755)
Q Consensus 455 iwdl~~~~~--~~~~~~~~~V~~v~~spdg~~la~ 487 (755)
.||..+... ........+|..-+|.|-|...++
T Consensus 228 fw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 228 FWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred eecccccccccceeccccCcceeccccccCceeEe
Confidence 999876432 244455667888888886654444
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.62 E-value=1.9e-05 Score=80.42 Aligned_cols=191 Identities=17% Similarity=0.149 Sum_probs=123.7
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe-ccCC----cc
Q 004410 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIR----EI 472 (755)
Q Consensus 398 ~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~-~~~~----~~ 472 (755)
.++.+++++.++.|..||..+++.+..+.....+..... . .+..++.++.++.|+.+|..+++++.. .... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~-~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPV-V-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEE-E-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceee-e-cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 455788888999999999999999888764333222222 2 456677777889999999999988743 2211 12
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC---CCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL---PGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~---~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
........++..++++..++.|..+|+.+++.+....... ..... ....+..-.... ++ .++++..++.+.-+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE-PRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST-T-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEE
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC-CCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEE
Confidence 2333344458899999999999999999999876543311 00000 001122222222 33 788888888644449
Q ss_pred CCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..+....... . ...+.. ....++..|+.++.++.|++||+.+++
T Consensus 190 ~~tg~~~w~~--~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 190 LATGEKLWSK--P--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp TTTTEEEEEE--C--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCCCCEEEEe--c--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 8887755432 2 222222 245678888888899999999999987
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.59 E-value=4.7e-07 Score=93.42 Aligned_cols=103 Identities=20% Similarity=0.326 Sum_probs=88.1
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--EeccCCcceEEEEEccC
Q 004410 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPD 481 (755)
Q Consensus 404 s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~~~~~V~~v~~spd 481 (755)
..+....+.+|.+..+.+...++|-..++.++|+| |+++++++..|.+|||-.....-.+ ...+|+.-|..++..++
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 34555667778777788888899999999999999 9999999999999999998877766 35679999999999776
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEeeee
Q 004410 482 GKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 482 g~~la~gs~dg~I~iwD~~~~~~~~~~ 508 (755)
..|++|+.|++|++||+.+++.+.++
T Consensus 206 -~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 206 -YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred -ceeeecCCCCcEEEEecccCCccccc
Confidence 45899999999999999999887543
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.58 E-value=6.9e-06 Score=80.44 Aligned_cols=223 Identities=14% Similarity=0.091 Sum_probs=146.0
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
...+||.|+..|...+|...+....+. ....|...|.-+.=.-| .--+..++.|.++++.++..+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----- 151 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----- 151 (344)
T ss_pred cccEEEeccccceeeeecccCccccee------eecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc-----
Confidence 345889999999999999775442221 12223333332221111 234667788999999987544211
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC--CEEEEEEcCCC-e
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-F 401 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~--~V~~l~~s~~~-~ 401 (755)
+..|.. .+..+++++++ .
T Consensus 152 -----------------------------------------------------------~~~h~~~~~~ns~~~snd~~~ 172 (344)
T KOG4532|consen 152 -----------------------------------------------------------FAVHNQNLTQNSLHYSNDPSW 172 (344)
T ss_pred -----------------------------------------------------------ceeeccccceeeeEEcCCCce
Confidence 011222 26789999999 8
Q ss_pred EEEEeCCCcEEEEeCCCC--eEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE------EeccCCc
Q 004410 402 LLSSSADKTVRLWQVGID--RCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV------DYTDIRE 471 (755)
Q Consensus 402 L~s~s~Dg~V~iWdl~s~--~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~------~~~~~~~ 471 (755)
+++.+....|..|.+... ..+++. ...+.-.+..|+. ....||++..||++.|||++..... +...|.+
T Consensus 173 ~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG 251 (344)
T KOG4532|consen 173 GSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG 251 (344)
T ss_pred EEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC
Confidence 888899999999987643 333322 2455567788888 8889999999999999999864322 3456889
Q ss_pred ceEEEEEccCCC--eEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 472 IVSAVCYCPDGK--GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 472 ~V~~v~~spdg~--~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
.+..+.|++-|. +|+..-.-+.+++.|+++..-.+...+......+.....|.+-.|+. ++..+.+.+
T Consensus 252 a~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~-~n~s~~v~~ 321 (344)
T KOG4532|consen 252 AFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN-ENESNDVKN 321 (344)
T ss_pred ceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC-CCccccccc
Confidence 999999998653 55666667789999999988766554433332233334477777776 444444433
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=8.6e-07 Score=92.32 Aligned_cols=242 Identities=17% Similarity=0.159 Sum_probs=163.6
Q ss_pred CCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CCcEEEEEccCCeeeeeee
Q 004410 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFD 323 (755)
Q Consensus 245 pdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWdv~~~~~~~~~~ 323 (755)
.-.+++.+++-||.++.|.-.. .........+.+|.+.|.+++.+.+|.+++|.+. |..++++|+.+-..+.-++
T Consensus 18 tka~fiiqASlDGh~KFWkKs~----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK 93 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSR----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK 93 (558)
T ss_pred ehhheEEeeecchhhhhcCCCC----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc
Confidence 3456888999999999997443 1222334557889999999999999999999887 9999999998877665555
Q ss_pred cCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eE
Q 004410 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL 402 (755)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L 402 (755)
....+..+.+....+ ..+..+. +....++.+.+++...-. ......-.-|..+|..+.+++.+ .+
T Consensus 94 L~~lPg~a~wv~skG-d~~s~IA-----------Vs~~~sg~i~VvD~~~d~--~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 94 LVDLPGFAEWVTSKG-DKISLIA-----------VSLFKSGKIFVVDGFGDF--CQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred cccCCCceEEecCCC-CeeeeEE-----------eecccCCCcEEECCcCCc--CccceecccccCceEEEEeeccccce
Confidence 443333322222111 1111111 112223334444332211 12233345689999999999988 88
Q ss_pred EEEeCCCcEEEEeCCC------CeEEEEE----------ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 403 LSSSADKTVRLWQVGI------DRCLRVF----------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 403 ~s~s~Dg~V~iWdl~s------~~~~~~~----------~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
++....|.|.-|.... .+....+ +.....+++.|+| ++..+.+-+.|.+|++++..++++++.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhh
Confidence 8888899999998773 1111111 2456789999999 999999999999999999998765432
Q ss_pred cc---------------------------------C-CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 467 TD---------------------------------I-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 467 ~~---------------------------------~-~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
.+ + ...-+.++|...|++|+-|+.=| |++.++.++....
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence 11 0 01245678888999999887654 7888888887654
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.55 E-value=6.6e-05 Score=74.93 Aligned_cols=247 Identities=13% Similarity=0.106 Sum_probs=129.6
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
++.+.+|++||.- .|..|.|...+..-.... ...+.-+.-.-.=.-++||||+.+||.+...|+|+|+|+.... +.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~--~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSII--GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LF 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchhee--EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eE
Confidence 5678899988865 456788876554321110 1111111112234568999999999999999999999986533 22
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC-
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN- 399 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~- 399 (755)
.+......+ ..-...|..|.|.+-
T Consensus 79 ~I~p~~~~~-------------------------------------------------------~d~~~Aiagl~Fl~~~ 103 (282)
T PF15492_consen 79 VIPPAMSFP-------------------------------------------------------GDLSDAIAGLIFLEYK 103 (282)
T ss_pred EcCcccccC-------------------------------------------------------CccccceeeeEeeccc
Confidence 222110000 000122222332211
Q ss_pred ------CeEEEEeCCCcEEEEeCC-----CCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeCCCc-EEEEEcCCCeE
Q 004410 400 ------GFLLSSSADKTVRLWQVG-----IDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQV 463 (755)
Q Consensus 400 ------~~L~s~s~Dg~V~iWdl~-----s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~Dg~-V~iwdl~~~~~ 463 (755)
..|+....+|.++-|-+. ..+....|. +...|+++.++| ..++|++|+.... -..+.....-+
T Consensus 104 ~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GL 182 (282)
T PF15492_consen 104 KSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGL 182 (282)
T ss_pred cccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCc
Confidence 156677777777777653 223334443 577899999999 7777777664322 11111111111
Q ss_pred EEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 464 VDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
..|.-..+......+.. +...-.... +-.+|.+-+.+.. .........|..|..+| |+..|++...+
T Consensus 183 taWRiL~~~Pyyk~v~~~~~~~~~~~~---~~~~~~~~~~~~f--------s~~~~~~d~i~kmSlSP-dg~~La~ih~s 250 (282)
T PF15492_consen 183 TAWRILSDSPYYKQVTSSEDDITASSK---RRGLLRIPSFKFF--------SRQGQEQDGIFKMSLSP-DGSLLACIHFS 250 (282)
T ss_pred eEEEEcCCCCcEEEccccCcccccccc---ccceeeccceeee--------eccccCCCceEEEEECC-CCCEEEEEEcC
Confidence 11111111111111100 001100111 1123333222211 11222456899999999 99999999999
Q ss_pred CcEEEEECCcceeeEEE
Q 004410 543 SLVRVLCGENVVGKFKA 559 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~ 559 (755)
|.|.+|++.....+...
T Consensus 251 G~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 251 GSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CeEEEEecCcchhhccc
Confidence 99999998876554443
No 295
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.55 E-value=4.6e-07 Score=99.23 Aligned_cols=202 Identities=15% Similarity=0.240 Sum_probs=135.6
Q ss_pred EEEEEEcCCC---eEEEEeCCCcEEEEeCCC--CeEEE--EEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 391 VLDLSWSKNG---FLLSSSADKTVRLWQVGI--DRCLR--VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 391 V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s--~~~~~--~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
|-++.|++.. +-+.......-.+|++.. .+.+. ..+|...|+.+.|+|+....+++++.|-.|..||+++...
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 4455666543 333333333445777642 22222 2369999999999999999999999999999999998543
Q ss_pred E--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 464 V--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 464 ~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
. .+..-....+.|+|+.....+++.+....|.+||++.+....- . .+.+...|+.+.|.......+++.+.
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~---s----~K~~vs~vn~~~fnr~~~s~~~s~~~ 222 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC---S----LKGHVSSVNSIDFNRFKYSEIMSSSN 222 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceE---E----ecccceeeehHHHhhhhhhhhcccCC
Confidence 3 4555566778899998666666777788899999997764321 1 22266778888887766678999999
Q ss_pred CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC--EEEEEeCCCcEEEEEcCCCCcc
Q 004410 542 DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK--HVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~--~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
|++|+.||........+.. .....+|...++.|-|. ++.---.+..|.+++.++...+
T Consensus 223 d~tvkfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e 282 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE 282 (1081)
T ss_pred CCceeeeccccccccccee-ccccCcceeccccccCceeEeccccCCeeeeeccccchhhh
Confidence 9999999987644433322 23445777777877554 3333333345666666555433
No 296
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.48 E-value=3.6e-05 Score=84.55 Aligned_cols=191 Identities=14% Similarity=0.107 Sum_probs=119.0
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEE-
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVC- 477 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~- 477 (755)
++.++.++.++.|..+|..+++.+........+.+.-.. .++.++.++.+|.|..||..+++.+...........+.
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 347778888999999999999988776544444332222 34567778889999999999998764332222211110
Q ss_pred -Ecc--CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC-CCCCEEEEEECCCcEEEEECCcc
Q 004410 478 -YCP--DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP-SDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 478 -~sp--dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp-~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
-+| .+..++++..+|.+..+|+.+++.+........... .....+..+.-+| ..+..+++++.++.+..+|..+.
T Consensus 183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~-~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR-TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC-CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 011 234778888899999999999987654322110000 0000000010011 02457888889999999999877
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
........ .....+. .++.+|+.++.||.|+.+|..+++
T Consensus 262 ~~~W~~~~----~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 262 RVLWKRDA----SSYQGPA--VDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred cEEEeecc----CCccCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence 65554421 1111222 356788888999999999999886
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.47 E-value=2.7e-06 Score=82.96 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=74.9
Q ss_pred CCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--EeccCCcceEEEEEcc-CCC
Q 004410 408 DKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCP-DGK 483 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~~~~~V~~v~~sp-dg~ 483 (755)
-+..++|+++..+.+..- .....|++++-+|...+++++|+.||.+-+||.+..... .+..|+..|..+-|+| ++.
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE 237 (319)
T ss_pred ccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence 345666776544433222 234459999999977888899999999999999987544 4778999999999999 788
Q ss_pred eEEEEeCCCcEEEEECCC
Q 004410 484 GGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 484 ~la~gs~dg~I~iwD~~~ 501 (755)
.|++++.||.+..||..+
T Consensus 238 ~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred heeEecCCCcEEEEcCCC
Confidence 999999999999999886
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.45 E-value=3.4e-06 Score=82.24 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=60.6
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
|.+++-+|.. .+++|+.||.|-+||.+.......+ .|...|..+-|+|.++..|++++.||.+..||..+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 8888888865 7888999999999999887443333 49999999999999999999999999999999876
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.42 E-value=0.00037 Score=77.00 Aligned_cols=305 Identities=12% Similarity=0.055 Sum_probs=162.9
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccce--eeec-ccc-cEE-EEEEecCCCEEEEEcCCCcEEEEEccCCeeeee
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQ--EFLA-HEG-SIL-TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG 321 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~--~l~~-H~~-~V~-~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~ 321 (755)
+..+++++.++.+.-+|..++...... .... .+.. ... .+. .+.. ++..|+.++.+|.+..+|..+|+.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEE-cCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 456666667777777776655432221 1100 0000 000 000 1111 355677788899999999999998776
Q ss_pred eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC-----ccceEecCCCCCEEEEEE
Q 004410 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-----KPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~gh~~~V~~l~~ 396 (755)
............. .....+....++.+..++....+... .+.....+...++.
T Consensus 146 ~~~~~~~~ssP~v------------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v---- 203 (394)
T PRK11138 146 TKVAGEALSRPVV------------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT---- 203 (394)
T ss_pred ccCCCceecCCEE------------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE----
Confidence 6543211000000 00011122233344444433221110 00001111112221
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCc--------EEEEEEee-CCCCEEEEEeCCCcEEEEEcCCCeEEEec
Q 004410 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY--------VTSVAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 397 s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~--------V~~i~fsp-~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~ 467 (755)
. ++.++.++.++.+..+|..+++.+-.+..... ...+.-+| ..+..++.++.+|.+..+|+.+++.+-..
T Consensus 204 ~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 204 A-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred E-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 1 34566777889999999998887655431110 11111122 13456777788999999999999876332
Q ss_pred cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
.... ...+. ..+..|++++.+|.+..+|..+++.+..... + .........+ .+..|++++.+|.|.+
T Consensus 283 ~~~~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~------~~~~~~sp~v---~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 283 EYGS-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD-L------LHRLLTAPVL---YNGYLVVGDSEGYLHW 349 (394)
T ss_pred cCCC-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc-c------CCCcccCCEE---ECCEEEEEeCCCEEEE
Confidence 2221 11222 2567888889999999999999876543211 0 0111122222 2467888999999999
Q ss_pred EECCcceeeEEEeeeccCCceE-EEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 548 LCGENVVGKFKASAFRVAGSQM-FATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~-~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+|..+.....+... ....+. ...+ .+..|+.++.||.|+.++.
T Consensus 350 ld~~tG~~~~~~~~--~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 350 INREDGRFVAQQKV--DSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EECCCCCEEEEEEc--CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 99888665554422 112222 2222 2457888999999998875
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=1.4e-07 Score=104.87 Aligned_cols=199 Identities=17% Similarity=0.302 Sum_probs=142.0
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~ 304 (755)
+++++++..+....+|++|+-+.++|+.|+..|.|+++++..+..+- ....|..+|+-+.=+-||..+++.+.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~-------s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE-------SVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc-------cccccccccccccccCCcceeeeecc
Confidence 45556666666777889999999999999999999999988766543 35789999999999999988777654
Q ss_pred CC--cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 305 DG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 305 Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
-. ...+|+..+- ..+.+
T Consensus 1164 ~S~PlsaLW~~~s~-------------------------------------------------------------~~~~H 1182 (1516)
T KOG1832|consen 1164 SSSPLSALWDASST-------------------------------------------------------------GGPRH 1182 (1516)
T ss_pred ccCchHHHhccccc-------------------------------------------------------------cCccc
Confidence 32 4678886431 12233
Q ss_pred EecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-e----cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S----HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
+|.+ -.++.|++.- .-+.|..-..+.|||++++..+.++ . .+..-++..|+| ++.+++- || .+|
T Consensus 1183 sf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~LIln---dG--vLW 1252 (1516)
T KOG1832|consen 1183 SFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTLILN---DG--VLW 1252 (1516)
T ss_pred cccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-CcceEee---Cc--eee
Confidence 3332 2457777655 3344555567899999999887764 2 233347888999 7777663 44 579
Q ss_pred EcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
|++..+.+...+.-..-..-.|+|.|..+++-+ .|||+++.+++.
T Consensus 1253 DvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1253 DVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred eeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHh
Confidence 999887664333333334457999999999866 589999988764
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.39 E-value=1.3e-05 Score=90.43 Aligned_cols=183 Identities=13% Similarity=0.172 Sum_probs=139.9
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCC-cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNN-YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY 478 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~-~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~ 478 (755)
.++.|+....+..+|+.+.+..+...-.. .|+-+.. +++++.+|...|+|.+-|..+.+.+ .+..|.+.|..+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 67778888888899999998887775332 4665553 6789999999999999999999888 57788888876655
Q ss_pred ccCCCeEEEEeCC---------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 479 CPDGKGGIVGTMT---------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 479 spdg~~la~gs~d---------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
.|+.|++++.. .-|+|||++.-+.+...++.. .-.-+.|+|.-...+++++..|...+.|
T Consensus 226 --~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---------~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 226 --QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---------GPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred --cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---------CchhhhhcccccceEEEEecccceeecc
Confidence 78899888764 448999999887765443321 1245788998888999999999999999
Q ss_pred CC---cc-eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 550 GE---NV-VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 550 ~~---~~-~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
.. +. ...+.. ......+..++++++|+.++.|..+|.|.+|. .+.++.
T Consensus 295 ~~~lsNP~~~~~~v--~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa-~~~~P~ 346 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMV--NPNGSGISAFDISSNGDALAFGDHEGHVNLWA-DRPQPQ 346 (1118)
T ss_pred ccccCCCccceeEE--ccCCCcceeEEecCCCceEEEecccCcEeeec-CCCCCc
Confidence 43 32 222222 34455599999999999999999999999998 444443
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.39 E-value=0.00019 Score=73.89 Aligned_cols=250 Identities=18% Similarity=0.245 Sum_probs=152.3
Q ss_pred ccCcceeecC-CCCeeEEeeCCCe-EEEEECCCCccc-ccccccceeeecccccEEEEEEecCCCEEEEEc-----CCCc
Q 004410 236 DRHGSATLKP-GDHELTLGQRMRR-VRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-----EDGT 307 (755)
Q Consensus 236 ~~~~~~~~sp-dg~~lasgs~dg~-V~Vw~~~~~~~~-~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs-----~Dg~ 307 (755)
.+...++.+| ....++.+-..|+ ..+||...+... .-.....+.|.||- .||+||++|+|.= ..|.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEE
Confidence 3445688999 5567777888775 568887765432 11223446677874 7999999999863 4589
Q ss_pred EEEEEcc-CCeeeeeeecCCCCCceeEEeeCCCCceeEEee-cCc-ceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 308 VRVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDV-DKE-KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 308 I~vWdv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
|-|||+. +-+.+.++..+.-.+.-+.+.++....++.... ... ...+.+.-...-+..+...+.....+.++ ..+
T Consensus 79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q--~~L 156 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ--VEL 156 (305)
T ss_pred EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee--eec
Confidence 9999999 678888898888888888887776443333211 111 00111111112222333333333222222 123
Q ss_pred --cCCCCCEEEEEEcCCCeEEEEeC-CC-------cEEEEeCCCCeEEEEEe--------cCCcEEEEEEeeCCCCEEEE
Q 004410 385 --QGHSSEVLDLSWSKNGFLLSSSA-DK-------TVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFIS 446 (755)
Q Consensus 385 --~gh~~~V~~l~~s~~~~L~s~s~-Dg-------~V~iWdl~s~~~~~~~~--------h~~~V~~i~fsp~d~~~l~s 446 (755)
.-|...|..|++..+|.++.+.. .+ -|-+++. ++.+..+. ...+|-+|++++ ++.++++
T Consensus 157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~ 233 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAV 233 (305)
T ss_pred CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeC-CCCEEEE
Confidence 44778899999999995555542 22 1334433 33233332 568999999999 7777654
Q ss_pred -EeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEEC
Q 004410 447 -GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (755)
Q Consensus 447 -gs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~ 499 (755)
+=.-+.+.+||..+++++......+ +..++-.+++ +++.+..|.+.....
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~--f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDG--FLVSSGQGQLIRLSP 284 (305)
T ss_pred ECCCCCEEEEEECCCCCEeeccccCc-eeeeeecCCc--eEEeCCCccEEEccC
Confidence 4566789999999999886554433 4455555555 555555666444433
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.38 E-value=0.00047 Score=70.76 Aligned_cols=219 Identities=16% Similarity=0.164 Sum_probs=139.6
Q ss_pred eeecC-CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEe-cCCCEEEEEcCCCcEEEEEccCCee
Q 004410 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS-LDGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 241 ~~~sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fs-pdg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
..|.+ ++.++++-...+.|..|+........ +. . .....+++. +++.++++ ..+ .+.++|..+++.
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------~~-~-~~~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~ 72 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------ID-L-PGPNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKV 72 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------EE-S-SSEEEEEEECTTSEEEEE-ETT-CEEEEETTTTEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------Ee-c-CCCceEEEEccCCEEEEE-EcC-ceEEEecCCCcE
Confidence 67887 66677777778999999977654322 11 1 126777887 67655554 444 456668877753
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC-CCCCEEEEEEc
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWS 397 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~l~~s 397 (755)
....... ... .....+++++.
T Consensus 73 ~~~~~~~----------------------------------------------------------~~~~~~~~~ND~~vd 94 (246)
T PF08450_consen 73 TVLADLP----------------------------------------------------------DGGVPFNRPNDVAVD 94 (246)
T ss_dssp EEEEEEE----------------------------------------------------------TTCSCTEEEEEEEE-
T ss_pred EEEeecc----------------------------------------------------------CCCcccCCCceEEEc
Confidence 2211100 011 23457889999
Q ss_pred CCCe-EEEEeCC--------CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCcEEEEEcCC--CeEE-
Q 004410 398 KNGF-LLSSSAD--------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRR--CQVV- 464 (755)
Q Consensus 398 ~~~~-L~s~s~D--------g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~V~iwdl~~--~~~~- 464 (755)
++|. .++.... +.|..++.. ++.......-...+.|+|+| +++.|+ +-+..+.|..+++.. ..+.
T Consensus 95 ~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~ 172 (246)
T PF08450_consen 95 PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSN 172 (246)
T ss_dssp TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred CCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC-cchheeecccccceeEEEeccccccceee
Confidence 9994 4443322 457778877 66666666667789999999 887654 667788899999863 2111
Q ss_pred -----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 465 -----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 465 -----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.........-.+++..+|++.++....+.|.++|.. ++++..... ....+++++|...+...|+++
T Consensus 173 ~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~--------p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 173 RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL--------PVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---------SSSSEEEEEEESTTSSEEEEE
T ss_pred eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC--------CCCCEEEEEEECCCCCEEEEE
Confidence 122222347889999999988888889999999998 666544332 234789999953255555554
Q ss_pred E
Q 004410 540 S 540 (755)
Q Consensus 540 s 540 (755)
+
T Consensus 244 t 244 (246)
T PF08450_consen 244 T 244 (246)
T ss_dssp E
T ss_pred e
Confidence 4
No 304
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.38 E-value=7.4e-07 Score=62.70 Aligned_cols=36 Identities=47% Similarity=0.860 Sum_probs=34.1
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
.+++.+|.+.|++|+|+|++++|++++.|+.|+|||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999997
No 305
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=0.00014 Score=78.13 Aligned_cols=290 Identities=12% Similarity=0.154 Sum_probs=166.3
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceE
Q 004410 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (755)
Q Consensus 287 V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 366 (755)
=+-+.|||-|.||+|--.-| |.+|-=.+-..++.+.. ..+..+.|+++..-. +.......... ........+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~H--p~Vq~idfSP~EkYL-VT~s~~p~~~~----~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYH--PGVQFIDFSPNEKYL-VTYSPEPIIVE----EDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccC--CCceeeecCCccceE-EEecCCccccC----cccCCCceE
Confidence 45689999999999987765 88997655555554432 234444555543221 11111111000 012344567
Q ss_pred EEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEE
Q 004410 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYF 444 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l 444 (755)
.+|+.....+... ...+.+....-.-..||.|+ ++|.... ..|.||+..+..++-.-. .-..|....|+| .+++|
T Consensus 285 ~IWDI~tG~lkrs-F~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~ll 361 (698)
T KOG2314|consen 285 IIWDIATGLLKRS-FPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLL 361 (698)
T ss_pred EEEEccccchhcc-eeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCC-CcceE
Confidence 7777765443211 11111121222346799999 6665554 679999877643332221 456788999999 77777
Q ss_pred EEEeC-----CCcEEEEEcCCCeEEEecc-CCcceEEEEEccCCCeEEEEeC----------CCcEEEEECCCCeEeeee
Q 004410 445 ISGSI-----DGKVRIWEVRRCQVVDYTD-IREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 445 ~sgs~-----Dg~V~iwdl~~~~~~~~~~-~~~~V~~v~~spdg~~la~gs~----------dg~I~iwD~~~~~~~~~~ 508 (755)
|-=.. -..+.+..+.+++.+.... ++-.-..+-|..+|.+|++-.. -..+.|+.++.......
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve- 440 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE- 440 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce-
Confidence 75432 2357777888777664332 2223344677788888876322 11244555554332211
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEE-EEC--CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIV-TSA--DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS- 584 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s-~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs- 584 (755)
...-...|..++|-| .+..+++ .+. ..++.+|..............-.....+.+.|+|.|++++.+.
T Consensus 441 -------~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 441 -------VVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAAL 512 (698)
T ss_pred -------eeecchheeeeeecc-CCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEe
Confidence 011235788999999 5554444 433 3578888776433332221111224567899999999998764
Q ss_pred --CCCcEEEEEcCC
Q 004410 585 --EDSNIYIWNYSN 596 (755)
Q Consensus 585 --~Dg~I~iWd~~~ 596 (755)
..|.+.++|+..
T Consensus 513 ~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 513 VSRRGDLEFYDTDY 526 (698)
T ss_pred cccccceEEEecch
Confidence 568899999885
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=3e-06 Score=85.68 Aligned_cols=140 Identities=12% Similarity=0.237 Sum_probs=105.7
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-----eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~-----~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
..++|.++.|...+ .+..|...|.|...|++.+ .+...+-|...|++++....++.+|++.+.+|+|.+||++.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 56788899999866 8889999999999999854 66777789999999998876889999999999999999996
Q ss_pred CeE---E-EeccCCcceEE--EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 461 CQV---V-DYTDIREIVSA--VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 461 ~~~---~-~~~~~~~~V~~--v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
-++ + ++.+|-..-.- +-..+....+++++.|-..+||.++.+++..+.+.. .......+..++|..
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~----~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP----YSASEVDIPSVAFDS 402 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC----Cccccccccceehhc
Confidence 555 3 55665443222 334455567788999999999999999998764432 222333555566543
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=3.2e-05 Score=86.45 Aligned_cols=187 Identities=17% Similarity=0.208 Sum_probs=131.1
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
.+.|.|++++ +++|+-|+.+|.|++.+....-
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---------------------------------------------- 70 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---------------------------------------------- 70 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc----------------------------------------------
Confidence 4578888886 7799999999999999864321
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeC---
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV--- 439 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~--- 439 (755)
.+...|... ..+| ++++|+.||+|.|-.+-+.+....+....++.+|+++|.
T Consensus 71 ------------------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~ 126 (846)
T KOG2066|consen 71 ------------------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSR 126 (846)
T ss_pred ------------------ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhh
Confidence 111223322 4456 999999999999999999999888988999999999992
Q ss_pred -CCCEEEEEeCCCcEEEEEcC---CCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc
Q 004410 440 -DDNYFISGSIDGKVRIWEVR---RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 440 -d~~~l~sgs~Dg~V~iwdl~---~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
..+.|++|+.-| +.++.-. ....+......+.|.+++| .|+++|-+..+| |+|||+.+.+.+...+....
T Consensus 127 ~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~-- 200 (846)
T KOG2066|consen 127 QQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQ-- 200 (846)
T ss_pred hhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCC--
Confidence 256799999888 7777643 2233345667789999999 677888877665 89999998887654432211
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
......--..+.|.+ + ..|+ -+...+|+|..+.
T Consensus 201 ~~R~e~fpphl~W~~-~-~~LV-IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 201 SVRPELFPPHLHWQD-E-DRLV-IGWGDSVKICSIK 233 (846)
T ss_pred CCCcccCCCceEecC-C-CeEE-EecCCeEEEEEEe
Confidence 111222345677876 2 3333 3455567776655
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.24 E-value=0.00022 Score=83.43 Aligned_cols=282 Identities=12% Similarity=0.148 Sum_probs=154.5
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
+.+.++.|..++..+..+...|.|.+-+......+.. ---.+.|.+++||||+++|+..+.++++.+-.- +
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~ 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--------GNVDNGISAASWSPDEELLALITGRQTLLFMTK-D 139 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee--------eeccCceEEEeecCCCcEEEEEeCCcEEEEEec-c
Confidence 5667788999999999999999999987655443322 124578999999999999999998888776532 2
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
...+.+..... +. ...+....+-
T Consensus 140 f~~i~E~~L~~---------------------d~------------------------------------~~~sk~v~VG 162 (1265)
T KOG1920|consen 140 FEPIAEKPLDA---------------------DD------------------------------------ERKSKFVNVG 162 (1265)
T ss_pred ccchhcccccc---------------------cc------------------------------------ccccccceec
Confidence 22111111000 00 0000111111
Q ss_pred EcCCCeEEEEeCCCcEEEEeCC-CCeEEEEEecCCcEEEEEEeeCCCCEEEEEe----CC-CcEEEEEcCCCeEE-Eecc
Q 004410 396 WSKNGFLLSSSADKTVRLWQVG-IDRCLRVFSHNNYVTSVAFNPVDDNYFISGS----ID-GKVRIWEVRRCQVV-DYTD 468 (755)
Q Consensus 396 ~s~~~~L~s~s~Dg~V~iWdl~-s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs----~D-g~V~iwdl~~~~~~-~~~~ 468 (755)
|-....-+-|+. |....-+.. ..+.+......+.=+.|.|-- ||.+|++.. .+ .+|+|||-+ +.+- .-..
T Consensus 163 wGrkeTqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~ 239 (1265)
T KOG1920|consen 163 WGRKETQFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP 239 (1265)
T ss_pred ccccceeeecch-hhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCc
Confidence 211110011110 000000000 000000001222235678876 888888832 23 789999988 4332 2222
Q ss_pred CCcceEEEEEccCCCeEEEEe---CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE---EECC
Q 004410 469 IREIVSAVCYCPDGKGGIVGT---MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV---TSAD 542 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs---~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s---~s~D 542 (755)
....-.+++|-|.|..+++-. .++.|.+|.-++-..- .+.+ ........+..++|+. ++..|++ ....
T Consensus 240 ~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg-~f~l----~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~ 313 (1265)
T KOG1920|consen 240 VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG-EFVL----PFPLDEKEVEELAWNS-NSDILAVVTSNLEN 313 (1265)
T ss_pred ccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc-cccc----CCcccccchheeeecC-CCCceeeeeccccc
Confidence 334457899999999988843 4567888876543211 1111 1222334599999998 7888877 4555
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEeCCCcEEEEEc
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPSEDSNIYIWNY 594 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs~Dg~I~iWd~ 594 (755)
..|++|-..+...-++....-..... +.|+|.-. .|..-..+|.+.++++
T Consensus 314 ~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 314 SLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 66999998886555544322222222 66776432 2333335666555554
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.22 E-value=0.00084 Score=69.17 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=145.4
Q ss_pred EEEEEec-CCCEEEEEcCCCc-EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 288 LTMKFSL-DGQYLASGGEDGT-VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 288 ~~l~fsp-dg~~LaSgs~Dg~-I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
..++.+| ++..++.+-.-|+ ..+||..+++....+..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a----------------------------------------- 46 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA----------------------------------------- 46 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----------------------------------------
Confidence 3577888 5667777777765 67899988876554432
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe-----CCCcEEEEeCC-CCeEEEEEe-cCCcEEEEEEe
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-----ADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFN 437 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s-----~Dg~V~iWdl~-s~~~~~~~~-h~~~V~~i~fs 437 (755)
.+-+.|.|| -.|++|| +|++.- ..|.|-|||+. +-+.+..+. +.-.-..+.+.
T Consensus 47 -------------~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~ 107 (305)
T PF07433_consen 47 -------------PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM 107 (305)
T ss_pred -------------CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence 223567888 6899999 666543 34889999998 566666664 55556678889
Q ss_pred eCCCCEEEEEe------------------CCCcEEEEEcCCCeEEE---e--ccCCcceEEEEEccCCCeEEEEeCCCc-
Q 004410 438 PVDDNYFISGS------------------IDGKVRIWEVRRCQVVD---Y--TDIREIVSAVCYCPDGKGGIVGTMTGN- 493 (755)
Q Consensus 438 p~d~~~l~sgs------------------~Dg~V~iwdl~~~~~~~---~--~~~~~~V~~v~~spdg~~la~gs~dg~- 493 (755)
| |+..|+++. .+-.|...|..+++++. + ..++..|..+++.++|..++..-..|.
T Consensus 108 p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~ 186 (305)
T PF07433_consen 108 P-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP 186 (305)
T ss_pred C-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC
Confidence 9 886666653 12356667778888773 3 346778999999999877766555443
Q ss_pred ------EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE-ECCCcEEEEECCcceeeEEEeeeccCC
Q 004410 494 ------CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT-SADSLVRVLCGENVVGKFKASAFRVAG 566 (755)
Q Consensus 494 ------I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 566 (755)
|.+++.... ....... ......-...|-+|++++ ++.+++++ -..+.+.+||..+....-.. .-.
T Consensus 187 ~~~~PLva~~~~g~~--~~~~~~p-~~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~tg~~~~~~----~l~ 258 (305)
T PF07433_consen 187 GDAPPLVALHRRGGA--LRLLPAP-EEQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVAVWDAATGRLLGSV----PLP 258 (305)
T ss_pred CccCCeEEEEcCCCc--ceeccCC-hHHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEEEEECCCCCEeecc----ccC
Confidence 333333221 1111110 001122346789999999 66666554 46788999998875433322 223
Q ss_pred ceEEEEEecCCCEEEEEeC
Q 004410 567 SQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 567 ~v~~l~fspdg~~L~sgs~ 585 (755)
-+..++-.+++ ++++.+.
T Consensus 259 D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 259 DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ceeeeeecCCc-eEEeCCC
Confidence 45566666666 6665554
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=9.6e-06 Score=84.73 Aligned_cols=205 Identities=14% Similarity=0.158 Sum_probs=146.3
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCe---EEEEE-ecCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCC
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR---CLRVF-SHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR 460 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~---~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~ 460 (755)
-|...|+.+.-....++++++.||.++.|.-..-. .++.+ .|...|.+++.+- ++.++.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 47888888887777799999999999999754322 22222 3888899999987 9999999777 99999999987
Q ss_pred CeEEEeccCCcceEEEEEcc-CC---CeEEE-EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 461 CQVVDYTDIREIVSAVCYCP-DG---KGGIV-GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~sp-dg---~~la~-gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
-..+...........++|.. .| ..|++ .-.+|.+.++|-....... .-....|..+|..+.+.| -+..
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~------~~fkklH~sPV~~i~y~q-a~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD------GYFKKLHFSPVKKIRYNQ-AGDS 158 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc------ceecccccCceEEEEeec-cccc
Confidence 66553222222222223322 22 13333 3457889999987654321 112456889999999999 7778
Q ss_pred EEEEECCCcEEEEECCcceeeE-------------EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 536 VIVTSADSLVRVLCGENVVGKF-------------KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~~~~~-------------~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+++....|.|.-|......+.. ............++.|+|+|..+.+-+.|..|+++++.+++
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 8888888999999877311110 01112345677899999999999999999999999999987
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=4.8e-06 Score=84.21 Aligned_cols=147 Identities=11% Similarity=0.110 Sum_probs=109.9
Q ss_pred EEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 445 ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
++.+.+-.|-+-|+.++....+. ....|.++.|...++++..|+.+|.|..+|++.+..-.. ...+.-.|...|+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~----~~a~rlyh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG----WCAQRLYHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC----cceEEEEcCcchh
Confidence 55666788999999988665544 678899999999999999999999999999997621110 0111234778899
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCccee---eEEEeeeccCC--ceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVVG---KFKASAFRVAG--SQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~--~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+++....++.+|++.+.+|+|.+||.+-.+. .... .+|.. .-.-+-..+....|++++.|...+||.+..+.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY--eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY--EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeee--ecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 9888776789999999999999999876554 2222 23322 22223446677899999999999999999876
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.09 E-value=6.7e-06 Score=57.72 Aligned_cols=37 Identities=46% Similarity=0.934 Sum_probs=34.5
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEe
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ 415 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd 415 (755)
+++.++.+|.+.|.+|+|+|++ +|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3577899999999999999998 999999999999997
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.04 E-value=0.0025 Score=70.42 Aligned_cols=275 Identities=13% Similarity=0.095 Sum_probs=150.3
Q ss_pred CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCccee
Q 004410 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (755)
Q Consensus 296 g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (755)
+..|++++.+|.|.-+|..+|+.+.......... .+.......+. ..........+.+..++.+..++....+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~~~~~~~~~~----~~~~v~~~~v~v~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDG---WFSKNKSALLS----GGVTVAGGKVYIGSEKGQVYALNAEDGE 141 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCccc---ccccccccccc----cccEEECCEEEEEcCCCEEEEEECCCCC
Confidence 5567777788888889988888777665433110 00000000000 0000011112233344555555544322
Q ss_pred ccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEE--EEeeC-CCCEEEEEeCCCc
Q 004410 376 LLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV--AFNPV-DDNYFISGSIDGK 452 (755)
Q Consensus 376 ~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i--~fsp~-d~~~l~sgs~Dg~ 452 (755)
+ +.+.... +.+.+--...++.++.+..++.|..+|..+++.+-.+........+ .-+|. .+..++.++.+|.
T Consensus 142 ~----~W~~~~~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~ 216 (394)
T PRK11138 142 V----AWQTKVA-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGR 216 (394)
T ss_pred C----cccccCC-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCE
Confidence 2 2221111 1111110111457777888999999999999988776532211100 00110 2345677788999
Q ss_pred EEEEEcCCCeEEEeccCCc--------ceEEEEEcc--CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCC
Q 004410 453 VRIWEVRRCQVVDYTDIRE--------IVSAVCYCP--DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 453 V~iwdl~~~~~~~~~~~~~--------~V~~v~~sp--dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
+..+|..+++.+....... ....+..+| .+..+++++.+|.+..+|+.+++.+..... . .
T Consensus 217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~--------~ 286 (394)
T PRK11138 217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--G--------S 286 (394)
T ss_pred EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--C--------C
Confidence 9999999887652211100 011112233 355777788899999999999987654221 0 1
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...+.. .+..|++++.++.+..+|..+............ ....+..+ .+.+|+.++.||.|++.|..+++
T Consensus 287 ~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 287 VNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred ccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 111222 446788888999999999887655443311111 11122222 25678889999999999999887
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.03 E-value=0.00052 Score=80.41 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=139.1
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC-------
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR------- 459 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~------- 459 (755)
...|.++.|..+. .++.+..+|.|.+-|..+......-.-...|.+++|+| |+..++..+.+++|.+.+-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3689999999888 88888899999999988877665555788899999999 99999999888888775431
Q ss_pred --------CCeEE---------Eecc---------------------CCcceEEEEEccCCCeEEE-----EeCCCcEEE
Q 004410 460 --------RCQVV---------DYTD---------------------IREIVSAVCYCPDGKGGIV-----GTMTGNCRF 496 (755)
Q Consensus 460 --------~~~~~---------~~~~---------------------~~~~V~~v~~spdg~~la~-----gs~dg~I~i 496 (755)
.++.+ ++.+ ....=+.|+|.-||+++|+ ......|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 01111 1110 1122346999999999998 333368999
Q ss_pred EECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE---CCCcEEEEECCccee-eEEEeeeccCCceEEEE
Q 004410 497 YDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS---ADSLVRVLCGENVVG-KFKASAFRVAGSQMFAT 572 (755)
Q Consensus 497 wD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s---~Dg~I~iwd~~~~~~-~~~~~~~~~~~~v~~l~ 572 (755)
||-. +.+... .......-.+++|-| .+.++++.. .|+.|.++.-+.... .+..........+..++
T Consensus 227 ~drE-g~Lns~--------se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 227 YDRE-GALNST--------SEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred eccc-chhhcc--------cCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence 9988 544321 111233446789999 778877753 466788988655332 22222222334489999
Q ss_pred EecCCCEEEE---EeCCCcEEEEEcCCCC
Q 004410 573 FTSDGKHVVS---PSEDSNIYIWNYSNQD 598 (755)
Q Consensus 573 fspdg~~L~s---gs~Dg~I~iWd~~~~~ 598 (755)
|+.++..|++ ......|++|-+.+-.
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEecCeE
Confidence 9999999988 5555569999987743
No 315
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.01 E-value=0.001 Score=67.61 Aligned_cols=183 Identities=17% Similarity=0.118 Sum_probs=115.5
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEE--EeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeE
Q 004410 408 DKTVRLWQVGIDRCLRVFSHNNYVTSVA--FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG 485 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~h~~~V~~i~--fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~l 485 (755)
+++|..||..+++.+-.......+.... ..+ ++..+++++.++.|..||..+++.+........+...- ..++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 6889999999999998886422222222 223 56777778899999999999998874333333322211 2356677
Q ss_pred EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC
Q 004410 486 IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA 565 (755)
Q Consensus 486 a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 565 (755)
++++.++.|+.+|+.+++.......... .... ......... .+..++++..++.|..+|..+.............
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~~-~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSS---PPAG-VRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SS---CTCS-TB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccceeeeEecccCCcceeeeeccccc---cccc-cccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 8888889999999999998765221110 0011 111222222 3678888888999999999988776666432211
Q ss_pred C--------ceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 566 G--------SQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 566 ~--------~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
. .+..-....++ .++.++.++.+..+|+.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE 194 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC
Confidence 1 11222222344 77778888864444999887
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00031 Score=72.91 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=71.7
Q ss_pred ceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
..-+.+|...|.+++|+|.. .+..++.+.+|+|.|+++..+...+.....+.+++|.-++.++++.|-..|.|.|||+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 33556788899999999976 7889999999999999999999998766999999999877788999999999999999
Q ss_pred CCC
Q 004410 459 RRC 461 (755)
Q Consensus 459 ~~~ 461 (755)
+..
T Consensus 266 R~~ 268 (463)
T KOG1645|consen 266 RQP 268 (463)
T ss_pred cCC
Confidence 853
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.99 E-value=9.9e-05 Score=83.54 Aligned_cols=181 Identities=17% Similarity=0.255 Sum_probs=132.4
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecC
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
++..++.|+--..+..+|..+... .+...-..+.|.-|+. ++++|.+|...|+|.+-|..+.+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e-------~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~------- 209 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKE-------TRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFET------- 209 (1118)
T ss_pred CCcceeecchhhheeeeeccccee-------eeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCce-------
Confidence 455677777777777778664331 1122222334666665 689999999999999999876543
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEE
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS 405 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~ 405 (755)
++++..|.+.|.++...-+ .|+++
T Consensus 210 -------------------------------------------------------iht~~aHs~siSDfDv~GN-lLitC 233 (1118)
T KOG1275|consen 210 -------------------------------------------------------IHTFDAHSGSISDFDVQGN-LLITC 233 (1118)
T ss_pred -------------------------------------------------------eeeeeccccceeeeeccCC-eEEEe
Confidence 5667788888888766532 67776
Q ss_pred e---------CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc---CCC--eEEEeccCCc
Q 004410 406 S---------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV---RRC--QVVDYTDIRE 471 (755)
Q Consensus 406 s---------~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl---~~~--~~~~~~~~~~ 471 (755)
+ .|..|+|||++..+.+.-++......-+.|+|.-...+++++..|...+-|. ... ..........
T Consensus 234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s 313 (1118)
T KOG1275|consen 234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS 313 (1118)
T ss_pred ecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence 5 4677999999988877776644444677889977778999999999999983 332 2223444555
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEE
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD 498 (755)
.+.+++++++|+.++.|..+|.|.+|-
T Consensus 314 ~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 314 GISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEecCCCceEEEecccCcEeeec
Confidence 699999999999999999999999997
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00044 Score=77.59 Aligned_cols=106 Identities=20% Similarity=0.351 Sum_probs=78.9
Q ss_pred eeecCCCCeeEEee----CCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 241 ATLKPGDHELTLGQ----RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 241 ~~~spdg~~lasgs----~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
.+|+|...++|.++ ..|.|.||--...... . -++.-| +++++|+|..-.||.|-+-|.+.||...+.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr-~-----Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQR-D-----VTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCCCCc-c-----ccccee---hhhhccChHHHHHhhccccceeEEEecCCc
Confidence 68999999998775 4688999853322110 0 011122 556999999999999999999999987654
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+.. .....|..+|..+.|
T Consensus 92 e~h--------------------------------------------------------------tv~~th~a~i~~l~w 109 (1416)
T KOG3617|consen 92 ETH--------------------------------------------------------------TVVETHPAPIQGLDW 109 (1416)
T ss_pred eee--------------------------------------------------------------eeccCCCCCceeEEe
Confidence 421 112358999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCC
Q 004410 397 SKNG-FLLSSSADKTVRLWQVG 417 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~ 417 (755)
+++| .|+++..-|.|.+|...
T Consensus 110 S~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 110 SHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCeEEEcCCCceeEEEEee
Confidence 9999 99999999999999765
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=5.7e-06 Score=92.55 Aligned_cols=198 Identities=15% Similarity=0.153 Sum_probs=137.0
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCC--cEE
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG--KVR 454 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg--~V~ 454 (755)
++...|..|....+|++|+-+. +|+.|+..|.|+++++.+|....... |...|+-+.-+. ++..+++.+.-. ...
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 4566788899999999999877 99999999999999999998887775 999999999887 777766654433 467
Q ss_pred EEEcCC-CeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 455 IWEVRR-CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 455 iwdl~~-~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
+|++.. +.... .-..-.++.|+..-+.-++|+......+||+.++....+..... ......-+...|+| ..
T Consensus 1171 LW~~~s~~~~~H---sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~----~~~~y~~n~a~FsP-~D 1242 (1516)
T KOG1832|consen 1171 LWDASSTGGPRH---SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT----VTSSYSNNLAHFSP-CD 1242 (1516)
T ss_pred HhccccccCccc---cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc----hhhhhhccccccCC-Cc
Confidence 899865 12221 12234678888876677788888889999999998765422111 11122236778999 55
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+|+ .|| .+||.+......++ .... .-..-.|+|.|..++.-++ |||+.+-+
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aIh~F--D~ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRF--DQFT-DYGGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHHhhh--hhhe-ecccccccCCCceEEeech-----hhhhHHHH
Confidence 5554 233 46887654222221 1111 1223469999999988776 89998865
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.93 E-value=0.011 Score=61.77 Aligned_cols=272 Identities=12% Similarity=0.096 Sum_probs=155.1
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CCCcEEEEEccCCeeeeeeecCC
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVRVWKVIEHERLDGFDVQD 326 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~Dg~I~vWdv~~~~~~~~~~~~~ 326 (755)
++|.|.|..++.. +- +.-. +-.-.+..+||++.++++. ..-.|.+||..+-....++..+.
T Consensus 17 ~rv~viD~d~~k~-lG-----mi~~---g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 17 SRVYVIDADSGKL-LG-----MIDT---GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp EEEEEEETTTTEE-EE-----EEEE---ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT
T ss_pred ceEEEEECCCCcE-EE-----Eeec---ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC
Confidence 4788888665431 11 1111 2222366899999888753 34479999999988777665443
Q ss_pred CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEE-
Q 004410 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS- 404 (755)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s- 404 (755)
.+-. . . ......++++.++ +++.
T Consensus 88 k~R~----------------------------------------------------~-~--~~~~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 88 KPRA----------------------------------------------------Q-V--VPYKNMFALSADGKFLYVQ 112 (342)
T ss_dssp S-B-------------------------------------------------------B--S--GGGEEE-TTSSEEEEE
T ss_pred cchh----------------------------------------------------e-e--cccccceEEccCCcEEEEE
Confidence 2100 0 0 0011124556666 3333
Q ss_pred -EeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC-CCeEEE-----eccCCcc-eEEE
Q 004410 405 -SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVD-----YTDIREI-VSAV 476 (755)
Q Consensus 405 -~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~-~~~~~~-----~~~~~~~-V~~v 476 (755)
.+--..|.|-|+..++.+..+.-.+- ...-|...+-|.+-+.||.+.-..+. .++... +....++ +..-
T Consensus 113 N~TPa~SVtVVDl~~~kvv~ei~~PGC---~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~ 189 (342)
T PF06433_consen 113 NFTPATSVTVVDLAAKKVVGEIDTPGC---WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP 189 (342)
T ss_dssp EESSSEEEEEEETTTTEEEEEEEGTSE---EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--
T ss_pred ccCCCCeEEEEECCCCceeeeecCCCE---EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccccc
Confidence 23345688889999999888865542 23334345678899999999999887 444431 1112222 2334
Q ss_pred EEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc----cCCCCCeEEEEEcCCCCCEEEEEE--C-----CC--
Q 004410 477 CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK----KLPGKRITGFQFSPSDPSKVIVTS--A-----DS-- 543 (755)
Q Consensus 477 ~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~----~~~~~~I~~v~fsp~d~~~l~s~s--~-----Dg-- 543 (755)
++...+..++--+.+|.|+-.|+..........+.+.... ....+...-+++++..+.+++... . |+
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 4555555666679999999999988775544444332111 011123344677773444333321 1 12
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCC
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
.|.++|..+.+...+..+ ...+.++..+.+.+ +|++.+ .++.|.+||..+++
T Consensus 270 eVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 366777777666666532 23577899999877 565544 57999999999987
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0017 Score=73.70 Aligned_cols=206 Identities=16% Similarity=0.193 Sum_probs=131.5
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccccc-EEEEEEecCCCEEEEEcCCCc-----EEEEEcc
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSLDGQYLASGGEDGT-----VRVWKVI 314 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~-V~~l~fspdg~~LaSgs~Dg~-----I~vWdv~ 314 (755)
-++++.+..+|.|+.+|.|.+.+-. +...+.+++|... |..+....+..+|++.++|+. |+||+++
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s--------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS--------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc--------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 5688999999999999998887732 2233557778777 444444434478999888765 8999986
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
.-+. ...+.++.. ..+++. .+.....++..+
T Consensus 101 k~~~-------n~sP~c~~~-------------------------------~ri~~~-----------~np~~~~p~s~l 131 (933)
T KOG2114|consen 101 KVDK-------NNSPQCLYE-------------------------------HRIFTI-----------KNPTNPSPASSL 131 (933)
T ss_pred ccCC-------CCCcceeee-------------------------------eeeecc-----------CCCCCCCcceEE
Confidence 5421 000111100 000000 011134567888
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeC--CCCeEEE-EE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe--EEEe
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQV--GIDRCLR-VF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDY 466 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl--~s~~~~~-~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~--~~~~ 466 (755)
+.+.+- .+++|-.+|.|..+.- ...+-.+ .+ ....+||.+++.. ++..++-...-..|.+|.+.... ....
T Consensus 132 ~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~l 210 (933)
T KOG2114|consen 132 AVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVL 210 (933)
T ss_pred EEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecCCCcceeee
Confidence 888877 8888999999999842 2111111 12 3678999999987 77663333345678999988555 2235
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
..+...+.|..+++....+++++ ..-+.+||.......
T Consensus 211 d~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 211 DNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPC 248 (933)
T ss_pred ccCCccceeeecCCCCccEEEec-CceEEEEcCCCccee
Confidence 66777888988888655566654 457999998865543
No 322
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.93 E-value=7.7e-06 Score=89.02 Aligned_cols=190 Identities=19% Similarity=0.393 Sum_probs=124.6
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEc----CCCcEEEEEccCCeeeee
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG----EDGTVRVWKVIEHERLDG 321 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs----~Dg~I~vWdv~~~~~~~~ 321 (755)
..+++.|..+|.|-+-..+..... ......+|....++++|++ |.+.||.|- .|..+.|||+.++-..
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv-- 142 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV-- 142 (783)
T ss_pred hhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCC--
Confidence 358899999999999876543221 1122456888999999998 667888763 3567999998765210
Q ss_pred eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec-CCCCCEEEEEEcCCC
Q 004410 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG 400 (755)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~ 400 (755)
+.. .+ .|. +-......++|-.+.
T Consensus 143 ---Pke---------------------------------------------------~~--~fs~~~l~gqns~cwlrd~ 166 (783)
T KOG1008|consen 143 ---PKE---------------------------------------------------SP--LFSSSTLDGQNSVCWLRDT 166 (783)
T ss_pred ---Ccc---------------------------------------------------cc--ccccccccCccccccccCc
Confidence 000 00 000 122234478888777
Q ss_pred -eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc-CCCe-EEE-----eccCCcc
Q 004410 401 -FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQ-VVD-----YTDIREI 472 (755)
Q Consensus 401 -~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl-~~~~-~~~-----~~~~~~~ 472 (755)
.+++|...+.|+++|++........-.+..+..+.+.|-.++++++-. ||.|-+||. +.-+ .+. .......
T Consensus 167 klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~ 245 (783)
T KOG1008|consen 167 KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQ 245 (783)
T ss_pred chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccc
Confidence 778888888999999975433333335567888889997888888766 999999993 3322 111 1122335
Q ss_pred eEEEEEccC--CCeEEEEeCCCcEEEEECC
Q 004410 473 VSAVCYCPD--GKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 473 V~~v~~spd--g~~la~gs~dg~I~iwD~~ 500 (755)
+..++|+|. |...+..-..++|++||+.
T Consensus 246 l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 246 LFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 899999994 3333334456789999986
No 323
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.88 E-value=0.006 Score=66.59 Aligned_cols=279 Identities=14% Similarity=0.129 Sum_probs=141.8
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee-eeecCCCCCceeEEe-eCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLYFT-INHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
.|+.|.|+++..-||.|...|.|.||.+...+... .......+.....+. .+....+.. .... .+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d--i~~r-----------~~ 69 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTD--ISDR-----------AP 69 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE---GGG-------------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEE--ehhh-----------CC
Confidence 58899999998899999999999999886654321 000000000000000 000001100 0000 00
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe---------cCCcEEEE
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSV 434 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~---------h~~~V~~i 434 (755)
+. ....-.|..-+....++|++++.+.-|+++.|..+|.+.|.|++....+..-. ....|+++
T Consensus 70 -------~~-~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 70 -------PS-LKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp -------TT--SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred -------cc-cccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 00 00001244455666899999999988899999999999999999888877642 34578999
Q ss_pred EEee----CCC---CEEEEEeCCCcEEEEEcC--C-C-e---EEEec-cCCcceEEEE-EccC-----------------
Q 004410 435 AFNP----VDD---NYFISGSIDGKVRIWEVR--R-C-Q---VVDYT-DIREIVSAVC-YCPD----------------- 481 (755)
Q Consensus 435 ~fsp----~d~---~~l~sgs~Dg~V~iwdl~--~-~-~---~~~~~-~~~~~V~~v~-~spd----------------- 481 (755)
.|.- .|+ -++++|...|.+.+|.+. . + - ..... .+...|..|. ++.+
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred EEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence 8873 122 368899999999999875 1 1 1 11222 4455555554 3211
Q ss_pred ---CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc----CCCCCEEEEEECCCcEEEEECCcce
Q 004410 482 ---GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS----PSDPSKVIVTSADSLVRVLCGENVV 554 (755)
Q Consensus 482 ---g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs----p~d~~~l~s~s~Dg~I~iwd~~~~~ 554 (755)
-..+++...+..++++...+.+...... ........+.+. -..+..|++-..+|.|+++.+..+.
T Consensus 222 g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 222 GISIPGYVVVVSESDIRVFKPPKSKGAHKSF--------DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp T----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred CCCcCcEEEEEcccceEEEeCCCCcccceee--------ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 1235556668889999998776543211 011122233342 1145677888899999999998876
Q ss_pred eeEEEeeec--cCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 555 GKFKASAFR--VAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 555 ~~~~~~~~~--~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
......... ....+...+++++|+.++-.+.. .+.++.+
T Consensus 294 ei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 294 EIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred HhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 655543221 11234456778888876665443 4444443
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00017 Score=80.93 Aligned_cols=178 Identities=11% Similarity=0.144 Sum_probs=121.8
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
..+.++|++++ +.+|+-|+.+|.|++++..... .....|... .-+|.++++|+.||+|.|..+-+.+...
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 45677888875 5899999999999999987654 333333332 5689999999999999999888777654
Q ss_pred eeeEEecccccCCCCCeEEEEEcCC----CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPS----DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~----d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s 582 (755)
... -..++..++++|+ ..+.+++|+.-| +.++.-.=...+-........++|.+++|. |.+||-
T Consensus 108 ~~d---------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAW 175 (846)
T KOG2066|consen 108 QYD---------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAW 175 (846)
T ss_pred eEe---------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEE
Confidence 322 2357899999994 356889999888 777653322222222235677899999995 778888
Q ss_pred EeCCCcEEEEEcCCCCcccCCCcc---c----cceeeeecCCeEEEEcCCCC
Q 004410 583 PSEDSNIYIWNYSNQDKSSSRSKS---I----WSCESFLSHNVSVAIPWVGL 627 (755)
Q Consensus 583 gs~Dg~I~iWd~~~~~~~~~~~~~---~----~~~~~f~~~~~~va~~w~g~ 627 (755)
++.+ .|+|||+...+....-... + -.|..+-.....+.|-|...
T Consensus 176 and~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~ 226 (846)
T KOG2066|consen 176 ANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDS 226 (846)
T ss_pred ecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCe
Confidence 8766 5899999988743322111 1 13333333467778888654
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00025 Score=79.46 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=59.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
+.+++|+|..-.||.|..-|.+.||..+... ..++ ...|..+|..+.||++|..|+|+..-|.|.+|...-
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--~htv-----~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--THTV-----VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce--eeee-----ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 4458999999999999999999999866433 2222 345999999999999999999999999999998864
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.83 E-value=0.013 Score=66.60 Aligned_cols=178 Identities=13% Similarity=0.154 Sum_probs=103.5
Q ss_pred CCCcEEEEeCCCCeEEEEEecC-C--------------------cE-EEEEEeeCCCCEEEEEeCCC-------------
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHN-N--------------------YV-TSVAFNPVDDNYFISGSIDG------------- 451 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~-~--------------------~V-~~i~fsp~d~~~l~sgs~Dg------------- 451 (755)
.++.|..+|..+++.+-.+... . .| ...++.+ .+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence 4677888888888877665421 0 01 1234444 466777777665
Q ss_pred -----cEEEEEcCCCeEEEeccC-Ccce------EEEEEc----cCCC---eEEEEeCCCcEEEEECCCCeEeeeeeEEe
Q 004410 452 -----KVRIWEVRRCQVVDYTDI-REIV------SAVCYC----PDGK---GGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 452 -----~V~iwdl~~~~~~~~~~~-~~~V------~~v~~s----pdg~---~la~gs~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
.|.-+|+.+++.+-.... .... ....+. -+|. .+++++.+|.+..+|..+++.+.......
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~ 331 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE 331 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence 799999999988732211 1100 001111 1343 57888999999999999999887544321
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEE------------------ECCCcEEEEECCcceeeEEEeeeccC------Cce
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVT------------------SADSLVRVLCGENVVGKFKASAFRVA------GSQ 568 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~------------------s~Dg~I~iwd~~~~~~~~~~~~~~~~------~~v 568 (755)
. .+...| ..++++ ..+|.+.-+|..+...........+. .+.
T Consensus 332 ~-----------~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 332 Q-----------PMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred c-----------ccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcc
Confidence 1 112222 222221 23566777777766655554322110 111
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 569 MFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 569 ~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
..-.....+.+|+.++.||.|+.+|..+|+.
T Consensus 398 ~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 398 WGGSLATAGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred cCcceEecCCeEEEECCCCeEEEEECCCCce
Confidence 1111123567899999999999999999983
No 327
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.82 E-value=0.0014 Score=71.85 Aligned_cols=90 Identities=17% Similarity=0.337 Sum_probs=72.7
Q ss_pred EEEeCCCCeEE----EEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEE
Q 004410 412 RLWQVGIDRCL----RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV 487 (755)
Q Consensus 412 ~iWdl~s~~~~----~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~ 487 (755)
++|++..++.. ..+.....|.|.+++| +...|+.|+.||.|.+||...+... .....-.++.++|+|+|..+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEE
Confidence 45666554432 2235888999999999 9999999999999999999776433 3455567899999999999999
Q ss_pred EeCCCcEEEEECCCCe
Q 004410 488 GTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 488 gs~dg~I~iwD~~~~~ 503 (755)
|+..|.+.+||+.-+.
T Consensus 317 ~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 317 GSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCceEEEEEeecCc
Confidence 9999999999987543
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.81 E-value=0.0045 Score=62.86 Aligned_cols=206 Identities=14% Similarity=0.189 Sum_probs=116.3
Q ss_pred EecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
.+.+-...+..|+|.|+. .+++....+.|..++. .|+.++.+. ..+..-.|++.. ++.++++--.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 344556679999999975 5566667788888886 477887775 345678888875 6666665556899999988
Q ss_pred CCC----eE---E--E--ec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC---CeEee-eeeEEecccccCCCCC
Q 004410 459 RRC----QV---V--D--YT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD---NQLYQ-QNQICLQGKKKLPGKR 522 (755)
Q Consensus 459 ~~~----~~---~--~--~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~---~~~~~-~~~~~~~~~~~~~~~~ 522 (755)
... .. . . .. .....+-.++|+|.++.|+++-...-..+|.+.. ..... .....+.. .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-DKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc-ccceecc
Confidence 431 11 1 1 11 2345689999999988888888777777777664 11111 10000111 2234556
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeecc------CCceEEEEEecCCCEEEEEeCCCcEEEE
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRV------AGSQMFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~------~~~v~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
+.+++++|..+.+++.......|.++|.............+. -...-.++|.++|++.+ .++-+..+++
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 899999998778888888888898998554322222211111 12457899999996554 4466666665
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.0019 Score=71.83 Aligned_cols=201 Identities=16% Similarity=0.214 Sum_probs=121.4
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
-+++..+++++.|+.-|.+++|+-..+..... ...+-.+.+..+..|++..++|.|+..|.|.|+.++.....
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~- 111 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR- 111 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcc------cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC-
Confidence 45677899999999999999999665443221 12234566777788999999999999999999988663211
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
..+++++. -..|...|++++|++++
T Consensus 112 ---------~~~~~t~~----------------------------------------------d~~~~~rVTal~Ws~~~ 136 (726)
T KOG3621|consen 112 ---------DLDYVTPC----------------------------------------------DKSHKCRVTALEWSKNG 136 (726)
T ss_pred ---------cceeeccc----------------------------------------------cccCCceEEEEEecccc
Confidence 11111111 12388999999999999
Q ss_pred -eEEEEeCCCcEEEEeCCCC-----eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE--eccCCc-
Q 004410 401 -FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIRE- 471 (755)
Q Consensus 401 -~L~s~s~Dg~V~iWdl~s~-----~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~--~~~~~~- 471 (755)
.+.+|...|+|.+-.+.+. .....+.....|..|... +..+|++..... .+++.+...+.+ ....++
T Consensus 137 ~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r~--~Lc~tE~eti~QIG~k~R~~~ 212 (726)
T KOG3621|consen 137 MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTRC--ILCQTEAETITQIGKKPRKSL 212 (726)
T ss_pred cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhhh--heeecchhHHHHhcCCCcCCc
Confidence 9999999999999888762 112223356777777765 344555544332 334444332221 111111
Q ss_pred ceEEEEEccC----CCeEEEEeCCCcEEEEECC-CCeEeeee
Q 004410 472 IVSAVCYCPD----GKGGIVGTMTGNCRFYDIK-DNQLYQQN 508 (755)
Q Consensus 472 ~V~~v~~spd----g~~la~gs~dg~I~iwD~~-~~~~~~~~ 508 (755)
.-...||-|. .+-.+.+..- ..++|..+ .|..+.+.
T Consensus 213 ~~~GACF~~g~~~~q~~~IycaRP-G~RlWead~~G~V~~Th 253 (726)
T KOG3621|consen 213 IDFGACFFPGQCKAQKPQIYCARP-GLRLWEADFAGEVIKTH 253 (726)
T ss_pred cccceEEeeccccCCCceEEEecC-CCceEEeecceeEEEee
Confidence 1344566553 2333443333 35677655 24444433
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.80 E-value=0.012 Score=64.79 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=84.4
Q ss_pred cceEEEEEcc-CCCeEEEE----eCCCc----EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 471 EIVSAVCYCP-DGKGGIVG----TMTGN----CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 471 ~~V~~v~~sp-dg~~la~g----s~dg~----I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
....++.|+- ++..+.+. +.+|. -.+|++..+++...... .-.....+.+++++| +...++.|+.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvt-----sipL~s~v~~ca~sp-~E~kLvlGC~ 279 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVT-----SIPLPSQVICCARSP-SEDKLVLGCE 279 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEE-----EEecCCcceEEecCc-ccceEEEEec
Confidence 3446677776 34444432 33444 45788776655432221 123456899999999 8999999999
Q ss_pred CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 542 DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
||.|.+||.......... ..-..+.++|+|+|.++++|+.-|.|.+||+.-..
T Consensus 280 DgSiiLyD~~~~~t~~~k----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 280 DGSIILYDTTRGVTLLAK----AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCeEEEEEcCCCeeeeee----ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999999998765444332 33457889999999999999999999999987654
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0048 Score=70.13 Aligned_cols=194 Identities=15% Similarity=0.166 Sum_probs=123.4
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCc-EEEEEEeeCCCCEEEEEeCCCc-----EEEEEcCCC-----
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY-VTSVAFNPVDDNYFISGSIDGK-----VRIWEVRRC----- 461 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~-V~~i~fsp~d~~~l~sgs~Dg~-----V~iwdl~~~----- 461 (755)
+|++++ .++.|+.+|.|.+.+- +.+.+..|. +... |+.+.... ..++|++.+.|+. |+||++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 356666 9999999999888863 333334443 4433 55554443 5578888777654 899999742
Q ss_pred -eEE---Eecc-----CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee-eeeEEecccccCCCCCeEEEEEcCC
Q 004410 462 -QVV---DYTD-----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ-QNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 462 -~~~---~~~~-----~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~-~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
+++ .... ...++.+++.+.+-+.+|+|-.+|.|..|.-.--+-.. ...+ ......+||++.+..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~-----~~~~~~pITgL~~~~- 181 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY-----SHRGKEPITGLALRS- 181 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee-----eccCCCCceeeEEec-
Confidence 233 2222 24568899999999999999999999998532111000 1111 122357899999988
Q ss_pred CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 532 DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++..++-......|.+|.+........ ....|...+.+.+|++....+++++. ..|++|+.+..+
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~-~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLK-VLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCccee-eeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence 566544444556788888764332222 22556677888888765554555543 589999987544
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.75 E-value=0.0048 Score=68.27 Aligned_cols=182 Identities=13% Similarity=0.159 Sum_probs=94.5
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc
Q 004410 392 LDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (755)
Q Consensus 392 ~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~ 471 (755)
..++|...+.+++-...++|.|+.--.....+.+.....+..|-. |.+|+..+.+ .|.+||+.+++.+.......
T Consensus 72 ~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~ 146 (443)
T PF04053_consen 72 LSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVSA 146 (443)
T ss_dssp SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS-E
T ss_pred eEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecCC
Confidence 457898877888888889999973222222233433334554442 6677666544 89999999999997666554
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEECCCC------------eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN------------QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~~~~------------~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
|..+.|+++|.+++..+.+ .+.|++.... ....... -...|.+.+|.- + .++-.
T Consensus 147 -vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---------~~~~IkSg~W~~-d--~fiYt 212 (443)
T PF04053_consen 147 -VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---------ISERIKSGCWVE-D--CFIYT 212 (443)
T ss_dssp --EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---------E-S--SEEEEET-T--EEEEE
T ss_pred -CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE---------ecceeEEEEEEc-C--EEEEE
Confidence 8999999999999998755 6667654433 1111000 024677777864 2 33333
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.. .++.+-... .... .....++.-+.+.+....|.....|+.|..+.++...
T Consensus 213 T~~-~lkYl~~Ge-~~~i----~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 213 TSN-HLKYLVNGE-TGII----AHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp -TT-EEEEEETTE-EEEE----EE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred cCC-eEEEEEcCC-cceE----EEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 333 555432211 1111 1124466667777877888888899999999887654
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.75 E-value=0.0051 Score=69.27 Aligned_cols=184 Identities=16% Similarity=0.115 Sum_probs=116.2
Q ss_pred EcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC----cEEEEEcCCCeEEEeccC
Q 004410 396 WSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVVDYTDI 469 (755)
Q Consensus 396 ~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg----~V~iwdl~~~~~~~~~~~ 469 (755)
+.|+| .+ .+.-..+.+.+.|..+.+....+.-......++++| ++.++++.+.+. ++...+..+...+.....
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 34555 22 233345677888888887777776666677889999 888888776432 233333322221111111
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCC-----CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE-ECCC
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD-----NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT-SADS 543 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~-----~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~-s~Dg 543 (755)
.. ...+.++|++..++ +++|.+.|..+ ......+. -.....++.++| |+++++++ ..+.
T Consensus 279 ~~---iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP---------VGKsPHGV~vSP-DGkylyVanklS~ 343 (635)
T PRK02888 279 AR---IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP---------VPKNPHGVNTSP-DGKYFIANGKLSP 343 (635)
T ss_pred HH---HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE---------CCCCccceEECC-CCCEEEEeCCCCC
Confidence 00 01344578877763 67899999998 33333221 245678899999 66666555 4589
Q ss_pred cEEEEECCcceeeE----------EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 544 LVRVLCGENVVGKF----------KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 544 ~I~iwd~~~~~~~~----------~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
+|.|+|..+....+ ... ..........+|.++|....|-.-|+.|..||+..
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvae-vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAE-PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEe-eccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 99999988754321 111 11223345678999999889999999999999986
No 334
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.71 E-value=0.0066 Score=64.59 Aligned_cols=308 Identities=15% Similarity=0.117 Sum_probs=133.7
Q ss_pred eeeccCcceeecCCCCeeEE-eeCCCeEEEEECCCCcccccccccceeeeccc-ccEEEEEEecCCCEEEEEcCCCcEEE
Q 004410 233 RIIDRHGSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~las-gs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fspdg~~LaSgs~Dg~I~v 310 (755)
+|......-+|.+||+.|+. +..+|.-.+|-+.-...+... |..+. .......++|+.+.|+-......|+-
T Consensus 33 ~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q------LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~ 106 (386)
T PF14583_consen 33 SHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ------LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRR 106 (386)
T ss_dssp EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------SS-B-TTT-EE-TTSSEEEEEETTTEEEE
T ss_pred ccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE------CccCCCCCccceEEecCCCeEEEEECCCeEEE
Confidence 33444445678999986555 444666555544332222222 22221 11223566788888876655667888
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCcee-EEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI-PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
-|+.+.+....+..+..-.....+..+.....+ .+..... ..+++.
T Consensus 107 vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~--------------------------d~~~l~------- 153 (386)
T PF14583_consen 107 VDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE--------------------------DWKPLT------- 153 (386)
T ss_dssp EETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG--------------------------G------------
T ss_pred EECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeeh--------------------------hccCcc-------
Confidence 888887654444443332222222222211111 0000000 000000
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC---CC-cEEEEEcC--CCeE
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DG-KVRIWEVR--RCQV 463 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~---Dg-~V~iwdl~--~~~~ 463 (755)
.|..-..+..+--...|.--|+.+++....+.....+..+.|+|.+..+|+-|-. +. .-|||-++ ....
T Consensus 154 -----~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~ 228 (386)
T PF14583_consen 154 -----KWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV 228 (386)
T ss_dssp -----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred -----ccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc
Confidence 0000001111222344666689999998888889999999999977777777653 22 12556544 3333
Q ss_pred EEec--cCCcceEEEEEccCCCeEEEEeC-----CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 464 VDYT--DIREIVSAVCYCPDGKGGIVGTM-----TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 464 ~~~~--~~~~~V~~v~~spdg~~la~gs~-----dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
.... .....+..=-|.|||..|.--+. +..|.-+|+.++........ .....+..++ ++.++
T Consensus 229 ~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~----------p~~~H~~ss~-Dg~L~ 297 (386)
T PF14583_consen 229 KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM----------PWCSHFMSSP-DGKLF 297 (386)
T ss_dssp EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----------SEEEEEE-T-TSSEE
T ss_pred eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC----------CceeeeEEcC-CCCEE
Confidence 3222 22345677789999988765322 33477788887765432111 1234455566 77776
Q ss_pred EEEECCC----------------cEEEEECCcceeeEEEe------eeccC--CceEEEEEecCCCEEEE-EeCCCcEEE
Q 004410 537 IVTSADS----------------LVRVLCGENVVGKFKAS------AFRVA--GSQMFATFTSDGKHVVS-PSEDSNIYI 591 (755)
Q Consensus 537 ~s~s~Dg----------------~I~iwd~~~~~~~~~~~------~~~~~--~~v~~l~fspdg~~L~s-gs~Dg~I~i 591 (755)
+--+.|. .|++++........... ...+. ..=..+.|+|||++|+- +...|...|
T Consensus 298 vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~v 377 (386)
T PF14583_consen 298 VGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAV 377 (386)
T ss_dssp EEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EE
T ss_pred EecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccE
Confidence 6555442 34556655432221110 00000 01246789999998764 556777777
Q ss_pred EEcC
Q 004410 592 WNYS 595 (755)
Q Consensus 592 Wd~~ 595 (755)
|-++
T Consensus 378 Y~v~ 381 (386)
T PF14583_consen 378 YLVE 381 (386)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7543
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.68 E-value=0.074 Score=57.75 Aligned_cols=276 Identities=13% Similarity=0.129 Sum_probs=144.6
Q ss_pred cCCCCeeEEe---------eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 244 KPGDHELTLG---------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 244 spdg~~lasg---------s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
|||+++++.. +..+.+.|+|+.++.. .. +......+....|||+|++||... ++.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~--~~------l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI--TP------LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE--EE------SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce--EE------CcCCccccccceeecCCCeeEEEe-cCceEEEECC
Confidence 5788877663 2245688888776432 11 111256788899999999999876 5789999987
Q ss_pred CCeeeeeeecC-----------------CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce------EEEeCC
Q 004410 315 EHERLDGFDVQ-----------------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT------CVVLPP 371 (755)
Q Consensus 315 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 371 (755)
++...+.-... -.....++|+++.. .++.+..+...+............. .+.++.
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~-~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk 150 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK-YLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK 150 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS-EEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCC-EEEEEEECCcCCceEEeeccCCccccCCcccccccCC
Confidence 77443222111 11234566666654 3444444444333333322222211 111110
Q ss_pred ----------cceeccCccceEe------cCCCCCEEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCeEEEEEe--c
Q 004410 372 ----------KVFRLLEKPLHEF------QGHSSEVLDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--H 427 (755)
Q Consensus 372 ----------~~~~~~~~~~~~~------~gh~~~V~~l~~s~~~-~L~s~s~D-----g~V~iWdl~s~~~~~~~~--h 427 (755)
.+.++.......+ ..-...+..+.|.+++ .|+..-.+ ..+.++|..++.+...+. .
T Consensus 151 ~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~ 230 (353)
T PF00930_consen 151 AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS 230 (353)
T ss_dssp TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES
T ss_pred CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC
Confidence 1111111111111 1234467889999998 35554433 236777887766544442 3
Q ss_pred CCcE---EEEEEe-eCCCCEEEEEeCCCc--EEEEEcCCCeEEEeccCCcceEE-EEEccCCCeEE-EEeCCC----cEE
Q 004410 428 NNYV---TSVAFN-PVDDNYFISGSIDGK--VRIWEVRRCQVVDYTDIREIVSA-VCYCPDGKGGI-VGTMTG----NCR 495 (755)
Q Consensus 428 ~~~V---~~i~fs-p~d~~~l~sgs~Dg~--V~iwdl~~~~~~~~~~~~~~V~~-v~~spdg~~la-~gs~dg----~I~ 495 (755)
...| ..+.|. +.+..+|.....||. |.+++...+....+....-.|+. +.++++++.|. ++..++ .|+
T Consensus 231 ~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY 310 (353)
T PF00930_consen 231 DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLY 310 (353)
T ss_dssp SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence 3333 245554 635556666667775 66667777777777766777755 67888877665 444422 455
Q ss_pred EEECC-CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 496 FYDIK-DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 496 iwD~~-~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
..++. ++.+.. +......+ ..+.|+| ++++++..
T Consensus 311 ~v~~~~~~~~~~-----LT~~~~~~----~~~~~Sp-dg~y~v~~ 345 (353)
T PF00930_consen 311 RVSLDSGGEPKC-----LTCEDGDH----YSASFSP-DGKYYVDT 345 (353)
T ss_dssp EEETTETTEEEE-----SSTTSSTT----EEEEE-T-TSSEEEEE
T ss_pred EEEeCCCCCeEe-----ccCCCCCc----eEEEECC-CCCEEEEE
Confidence 55666 555432 22211111 7899999 66655543
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0014 Score=68.22 Aligned_cols=249 Identities=11% Similarity=0.064 Sum_probs=128.5
Q ss_pred ceeeeeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-CEEEEEcCCCc
Q 004410 230 AMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGT 307 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~ 307 (755)
.+..+...+..++|+|..+ ++..++.+.+|+|.|+.+.. ....+.+| ..||+++|.-|. ++|..|-..|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccce-------eeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 3344455677799999999 67789999999999977544 33446677 789999998865 57777888999
Q ss_pred EEEEEccCCeeee-eeec--CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce-E
Q 004410 308 VRVWKVIEHERLD-GFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-E 383 (755)
Q Consensus 308 I~vWdv~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 383 (755)
|.|||+...+... ++.. ...++..+...... .+.. .+. +..........|.... .. +.+.+ .
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n--~~f~----~gg------lLv~~lt~l~f~ei~~-s~-~~~p~vl 325 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPN--KIFT----SGG------LLVFALTVLQFYEIVF-SA-ECLPCVL 325 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCcc--cccc----ccc------eEEeeehhhhhhhhhc-cc-cCCCccc
Confidence 9999997654221 1111 00111111110000 0000 000 0000000000010000 00 01111 1
Q ss_pred ecCCCCCEEEEEEcCCC--eEEEEeCCC------cEEE-EeCCCCeEEEEEe--c-CCc-----EEEEEEeeCCCCEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG--FLLSSSADK------TVRL-WQVGIDRCLRVFS--H-NNY-----VTSVAFNPVDDNYFIS 446 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~--~L~s~s~Dg------~V~i-Wdl~s~~~~~~~~--h-~~~-----V~~i~fsp~d~~~l~s 446 (755)
-.+..+...++++++.. .|++.-.+. .|-. -|-..|..+..-. + ..+ -+...+.+.+.++++.
T Consensus 326 ele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 326 ELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred ccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 12234556667776633 444432211 0111 1112222221111 1 000 0112222224455544
Q ss_pred -EeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECC
Q 004410 447 -GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 447 -gs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~ 500 (755)
|...+.+.+||..+.++++......+|..++... +|.-++..-.|..++||..+
T Consensus 406 ~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhheecceEEEEecC
Confidence 4556789999999999998888889999988766 44444444457788888654
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.64 E-value=0.0032 Score=69.39 Aligned_cols=189 Identities=17% Similarity=0.252 Sum_probs=120.9
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEE--eCC--CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCc--EEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSS--SAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGK--VRI 455 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~--s~D--g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~--V~i 455 (755)
+..-...+..-+|+|++ .++.. ... ..+.++|+.+++........+.-...+|+| |++.|+ +...||. |.+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccEEE
Confidence 33344567778899988 33322 222 359999999998888877666677789999 666654 5556665 677
Q ss_pred EEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC-Cc--EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 456 WEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-GN--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 456 wdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g~--I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+|+..++...+....+.-+.-.|+|||+.|+..+.. |. |.++|+........ ... ...-..-.|+| +
T Consensus 267 ~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri---T~~------~~~~~~p~~Sp-d 336 (425)
T COG0823 267 MDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL---TFS------GGGNSNPVWSP-D 336 (425)
T ss_pred EcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe---ecc------CCCCcCccCCC-C
Confidence 788888866666666666678999999999876654 33 77778877765321 111 11112667899 7
Q ss_pred CCEEEEEEC-CCc--EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 533 PSKVIVTSA-DSL--VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 533 ~~~l~s~s~-Dg~--I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
+++|+..+. +|. |.+.|..+... ... ..........+|.++|+.|+..+.-
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~-~~~--lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGK-IRI--LTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCc-EEE--ccccccCCCCCcCCCCceEEEeccC
Confidence 777776664 344 44555443332 221 2334444566788898887765543
No 338
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.61 E-value=0.033 Score=59.60 Aligned_cols=201 Identities=18% Similarity=0.279 Sum_probs=124.0
Q ss_pred CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCC------CCEEEEEeC----------CCcEEEEEcCCC-----eE--
Q 004410 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVD------DNYFISGSI----------DGKVRIWEVRRC-----QV-- 463 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d------~~~l~sgs~----------Dg~V~iwdl~~~-----~~-- 463 (755)
..|++.|..+.+.+..+. ....+++++..... ..+|+.|+. .|.|.++++... ++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 358899998888877664 55566666554322 467777753 288999999984 32
Q ss_pred EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCe-EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ-LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~-~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+......++|++++-- +| .|+++. .+.|.+|++...+ +....... ....++++.... .++++|...
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~-------~~~~i~sl~~~~---~~I~vgD~~ 148 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD-------SPFYITSLSVFK---NYILVGDAM 148 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE--------BSSSEEEEEEET---TEEEEEESS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec-------ceEEEEEEeccc---cEEEEEEcc
Confidence 2445667889998876 33 455544 5899999999888 54332221 122677777654 699999998
Q ss_pred CcEEEEECCcceeeEEEe-eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcccCCCc-cccceeeeecCCeEE
Q 004410 543 SLVRVLCGENVVGKFKAS-AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSK-SIWSCESFLSHNVSV 620 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~-~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~~~~~~~f~~~~~~v 620 (755)
..+.++........+... .......++++.|-++++.++.+..+|.|.++.++.......... .......|.-.....
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~ 228 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVN 228 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EE
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccc
Confidence 888887544322222211 123455688999987778999999999999999975432222222 344444444434333
Q ss_pred EE
Q 004410 621 AI 622 (755)
Q Consensus 621 a~ 622 (755)
.+
T Consensus 229 ~~ 230 (321)
T PF03178_consen 229 SF 230 (321)
T ss_dssp EE
T ss_pred eE
Confidence 33
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.57 E-value=2.4e-05 Score=85.29 Aligned_cols=199 Identities=16% Similarity=0.216 Sum_probs=132.3
Q ss_pred CCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCCeEE-EEE--ecCCcEEEEEEeeCCCCEEEEEe----CCCcEEEEE
Q 004410 388 SSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCL-RVF--SHNNYVTSVAFNPVDDNYFISGS----IDGKVRIWE 457 (755)
Q Consensus 388 ~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~~~~-~~~--~h~~~V~~i~fsp~d~~~l~sgs----~Dg~V~iwd 457 (755)
...+.|+++.-+. .++.|..+|.|-+-.++...-. ..+ ++..+.++++|++.|.+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4456677765543 7888999999999887654332 222 47889999999998778888774 356799999
Q ss_pred cCCCeEE-----Eecc-CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 458 VRRCQVV-----DYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 458 l~~~~~~-----~~~~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
+.++-.+ .+.. ......++||-.+.+++++|.....++++|++...... .....+.+.++.+.|-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~---------~svnTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV---------SSVNTKYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---------hhhhhhhcccceecCC
Confidence 9876221 1222 33456689999999999999999999999998432211 1122345667778886
Q ss_pred CCCEEEEEECCCcEEEEE-CCcceeeEEEe---eeccCCceEEEEEecCCC-EEEEEe-CCCcEEEEEcCC
Q 004410 532 DPSKVIVTSADSLVRVLC-GENVVGKFKAS---AFRVAGSQMFATFTSDGK-HVVSPS-EDSNIYIWNYSN 596 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd-~~~~~~~~~~~---~~~~~~~v~~l~fspdg~-~L~sgs-~Dg~I~iWd~~~ 596 (755)
.+.+++.-. ||.|.+|| ..+....+... .......+..++|.|... .+++.. ..++|+++++..
T Consensus 207 ~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 207 SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 666766655 99999999 33332222221 011123478899988532 344444 457799999854
No 340
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.55 E-value=0.11 Score=51.59 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=46.0
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
..+++.|+..+.+.--|...+.....+. . ...|.+-+.- -|++++.|+..|.+.+-++.+|.....+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i------l--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI------L--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh------h--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 3477788888888888877655433321 1 1222222221 477899999999999999999977666544
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.55 E-value=0.033 Score=58.32 Aligned_cols=245 Identities=14% Similarity=0.113 Sum_probs=131.2
Q ss_pred ceeecCCCCeeEEe----------eCCCeEEEEECCCCcccccc-cccceeeecccccEEEEEEecCCCEEEEEc--CCC
Q 004410 240 SATLKPGDHELTLG----------QRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSLDGQYLASGG--EDG 306 (755)
Q Consensus 240 ~~~~spdg~~lasg----------s~dg~V~Vw~~~~~~~~~~~-~~~~~~l~~H~~~V~~l~fspdg~~LaSgs--~Dg 306 (755)
.+.++|+++.++++ -..-.|.+||..+....... ++....++. -.....++++.||++++..- ---
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~-~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV-VPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B-S--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee-cccccceEEccCCcEEEEEccCCCC
Confidence 37889999988763 33456999998764321110 111101100 01112357788888777643 344
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|.|-|+..++.+.++..+. |....+
T Consensus 119 SVtVVDl~~~kvv~ei~~PG----C~~iyP-------------------------------------------------- 144 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG----CWLIYP-------------------------------------------------- 144 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS----EEEEEE--------------------------------------------------
T ss_pred eEEEEECCCCceeeeecCCC----EEEEEe--------------------------------------------------
Confidence 68888888887776665421 110000
Q ss_pred CCCCEEEEEEcCCCeEEEEeCCCcEEEEeCC-CCeEEEE----Ee-cCCcE-EEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVG-IDRCLRV----FS-HNNYV-TSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 387 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~-s~~~~~~----~~-h~~~V-~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
+.+..+.+.+.||.+.-..+. .|+.... |. ..+++ ..-++.. .+..++--+.+|.|+--|+.
T Consensus 145 ----------~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 145 ----------SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp ----------EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEET
T ss_pred ----------cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEecc
Confidence 011134455555555555554 3333211 11 12222 2333443 45556667889999998887
Q ss_pred CCeEE---EeccC----------CcceEEEEEccCCCeEEEEeCC---C-------cEEEEECCCCeEeeeeeEEecccc
Q 004410 460 RCQVV---DYTDI----------REIVSAVCYCPDGKGGIVGTMT---G-------NCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 460 ~~~~~---~~~~~----------~~~V~~v~~spdg~~la~gs~d---g-------~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
..... .+.-. .+.-.-+++++..+.|.+.-.. | .|.+||+.+++.+..+.+.
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----- 288 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----- 288 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-----
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-----
Confidence 76533 12111 1223447787766666553322 1 2888899999988765431
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEECCcceeeEEE
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTS-ADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~~~~~~~~~~ 559 (755)
..+.+++++.++..+|++.+ .++.+.+||..+.+.....
T Consensus 289 ----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 289 ----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 24668999986666776654 5799999999987555544
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.52 E-value=0.022 Score=57.85 Aligned_cols=200 Identities=14% Similarity=0.142 Sum_probs=101.5
Q ss_pred eeecccccEEEEEEecCCC-EEEEEcCCCcEEEEEccCCeeeeeeecCC-CCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~-~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.+.+-...|..|.|+|+.+ ++|+....+.|...+. +|+.++.+.... .+...+.+..++ .++...
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~--~~vl~~---------- 82 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG--RYVLSE---------- 82 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT--EEEEEE----------
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC--EEEEEE----------
Confidence 3445555699999999755 6666777788877786 578887776654 334444443222 111111
Q ss_pred eeeecCCceEEEeCCcc----eeccCcc---ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC---CeEEEEE
Q 004410 357 SLRKSSDLTCVVLPPKV----FRLLEKP---LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVF 425 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s---~~~~~~~ 425 (755)
.....++.+.... ....... +.....+...+-.|+|.+.+ .|+.+-...-..||.+.. ...+...
T Consensus 83 ----Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 83 ----ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp ----TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred ----cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 1111121111100 0000000 01112355678999999976 777777777777776653 2222222
Q ss_pred e---------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCC----------cceEEEEEccCCCeEE
Q 004410 426 S---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR----------EIVSAVCYCPDGKGGI 486 (755)
Q Consensus 426 ~---------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~----------~~V~~v~~spdg~~la 486 (755)
. ....+.+++++|..+++++.......|.++| .+++++...... ...-.|+|.++|++.+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 3456899999998888888888899999999 556655422222 2578899999996555
Q ss_pred EEeCCCcEEEE
Q 004410 487 VGTMTGNCRFY 497 (755)
Q Consensus 487 ~gs~dg~I~iw 497 (755)
+ +.-+..++|
T Consensus 238 v-sEpNlfy~f 247 (248)
T PF06977_consen 238 V-SEPNLFYRF 247 (248)
T ss_dssp E-ETTTEEEEE
T ss_pred E-cCCceEEEe
Confidence 5 455544443
No 343
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.50 E-value=0.023 Score=62.73 Aligned_cols=177 Identities=11% Similarity=0.161 Sum_probs=94.9
Q ss_pred cEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe-------ccCCcceEEEEEccC
Q 004410 410 TVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-------TDIREIVSAVCYCPD 481 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~-------~~~~~~V~~v~~spd 481 (755)
.|+||+.. |+.+..+. ..+.|.++.|.. + ..|++-..||.+++||+.......+ .-....+.++.+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 59999865 44555553 338999999986 4 5566677899999999975441110 001111222233334
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc-CC-CCCeEE-EEEcCCCCCEEEEEECCCcEEEEECCcceeeEE
Q 004410 482 GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK-LP-GKRITG-FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFK 558 (755)
Q Consensus 482 g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~-~~-~~~I~~-v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~ 558 (755)
| +++-+.++.+.+..-.................. .+ ...... ..++. +....+....++.+.+.+......
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc---
Confidence 4 555566666655533222211000000011000 00 001111 23333 344444445556666444332211
Q ss_pred EeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 559 ASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 559 ~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
....+++..+++||+|++||.-..+|.+.|...+-.+
T Consensus 213 ---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 213 ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE 249 (410)
T ss_pred ---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence 2234689999999999999999999999998765443
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.48 E-value=0.025 Score=61.84 Aligned_cols=202 Identities=18% Similarity=0.242 Sum_probs=117.2
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeE-------------------------------------------EEEE
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-------------------------------------------LRVF 425 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~-------------------------------------------~~~~ 425 (755)
.|+.+.|.++. .|+.+...|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47788888876 888888888888885421110 0011
Q ss_pred -ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc---------CCcceEEEEEcc-----CC---CeEEE
Q 004410 426 -SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD---------IREIVSAVCYCP-----DG---KGGIV 487 (755)
Q Consensus 426 -~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~---------~~~~V~~v~~sp-----dg---~~la~ 487 (755)
...+.|++++.+ +=.+++.|..+|.|.|.|++...++.... ....|+++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 146789999986 56799999999999999999988874322 223588888874 33 47899
Q ss_pred EeCCCcEEEEECC--C-CeEeeeeeEEecccccCCCCCeEEEE-EcCC-------------------CCCEEEEEECCCc
Q 004410 488 GTMTGNCRFYDIK--D-NQLYQQNQICLQGKKKLPGKRITGFQ-FSPS-------------------DPSKVIVTSADSL 544 (755)
Q Consensus 488 gs~dg~I~iwD~~--~-~~~~~~~~~~~~~~~~~~~~~I~~v~-fsp~-------------------d~~~l~s~s~Dg~ 544 (755)
|+..|.+.+|.+. . +... ..+......+..+|..+. ++.+ .-.-+++...+..
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~----v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFS----VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EE----EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EeCCCCEEEEEEecCCCCceE----EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 9999999999874 1 2111 111121222334444433 3211 1123556666889
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEE-----ecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATF-----TSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~f-----spdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
++|+...+.+...+. .........+++ ...+..|++-..+|.|++|.+..-+.
T Consensus 237 irv~~~~~~k~~~K~--~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKS--FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred eEEEeCCCCccccee--eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 999998776655554 322222334445 23577889999999999999988663
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.43 E-value=0.063 Score=55.92 Aligned_cols=195 Identities=13% Similarity=0.151 Sum_probs=107.2
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEE---------------EEecCCcEEEEE-EeeCCCCEEEEEeCCCcE
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR---------------VFSHNNYVTSVA-FNPVDDNYFISGSIDGKV 453 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~---------------~~~h~~~V~~i~-fsp~d~~~l~sgs~Dg~V 453 (755)
|..+...++- .|++- .|+.|+++++..-.... .+.....+...+ -....+...+......+|
T Consensus 38 I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 8888888766 44433 45999999986543333 222334455444 112244444445556689
Q ss_pred EEEEcCCC-----eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc----cccCCCCCeE
Q 004410 454 RIWEVRRC-----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG----KKKLPGKRIT 524 (755)
Q Consensus 454 ~iwdl~~~-----~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~----~~~~~~~~I~ 524 (755)
.+|..... +...-......+.+++|. ++.|++|..+ ...+.|+.++....-....... .......++.
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG 193 (275)
T ss_pred EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE
Confidence 98887653 344445566889999998 5688888744 5888999976654321110000 0011223344
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+... ++.+|++ . |..-.+.+....... ... ..-.....++++ ...||+..+.+ .|-||++.+++
T Consensus 194 ~~~~~--~~e~Ll~-~-~~~g~fv~~~G~~~r-~~~-i~W~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~ 258 (275)
T PF00780_consen 194 IFQLS--DNEFLLC-Y-DNIGVFVNKNGEPSR-KST-IQWSSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGE 258 (275)
T ss_pred EEEeC--CceEEEE-e-cceEEEEcCCCCcCc-ccE-EEcCCchhEEEE--ECCEEEEECCC-EEEEEECcCCc
Confidence 44443 3344443 2 333333333221111 111 222335556666 34688877765 59999999996
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.43 E-value=0.019 Score=63.59 Aligned_cols=216 Identities=14% Similarity=0.129 Sum_probs=106.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
...+.++|+|++++. +.+|...|+...... ....+.-....|.+.++ +|+-...+.|.|+.--+..
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r------------~k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWR------------NKAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTTE------------EEEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCCc------------ccccCceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence 456899999999888 667788888732111 01234555678988555 5666667889997422211
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
....+ . ....+..|-.
T Consensus 101 ~~k~i--------------------------------------------------------------~-~~~~~~~If~- 116 (443)
T PF04053_consen 101 VVKSI--------------------------------------------------------------K-LPFSVEKIFG- 116 (443)
T ss_dssp TT--------------------------------------------------------------------SS-EEEEE--
T ss_pred cceEE--------------------------------------------------------------c-CCcccceEEc-
Confidence 10010 0 0011233322
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC------------eEEE
Q 004410 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC------------QVVD 465 (755)
Q Consensus 398 ~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~------------~~~~ 465 (755)
|.|+....++.|.+||..+++.++.+.... |..+.|++ ++++++..+.+ .+.|++.... ....
T Consensus 117 --G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~ 191 (443)
T PF04053_consen 117 --GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFEL 191 (443)
T ss_dssp --SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEE
T ss_pred --CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEE
Confidence 634444444589999999999999997664 99999999 89999888754 6777766544 3333
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
.......|.+.+|..| .++-.+.. +++. +-+|....- ..-..+++=+.+.| ..+.+.....|+.|
T Consensus 192 ~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i---------~~ld~~~yllgy~~-~~~~ly~~Dr~~~v 256 (443)
T PF04053_consen 192 IHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGII---------AHLDKPLYLLGYLP-KENRLYLIDRDGNV 256 (443)
T ss_dssp EEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEE---------EE-SS--EEEEEET-TTTEEEEE-TT--E
T ss_pred EEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceE---------EEcCCceEEEEEEc-cCCEEEEEECCCCE
Confidence 3333567778888554 44444433 4444 333332110 00123444455555 44555555566666
Q ss_pred EEEECC
Q 004410 546 RVLCGE 551 (755)
Q Consensus 546 ~iwd~~ 551 (755)
..+.+.
T Consensus 257 ~~~~ld 262 (443)
T PF04053_consen 257 ISYELD 262 (443)
T ss_dssp EEEE--
T ss_pred EEEEEC
Confidence 555443
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.43 E-value=0.027 Score=61.22 Aligned_cols=201 Identities=13% Similarity=0.170 Sum_probs=108.6
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-c-----------------CCcEEEEEEeeCCCCEEEEEe
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-H-----------------NNYVTSVAFNPVDDNYFISGS 448 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h-----------------~~~V~~i~fsp~d~~~l~sgs 448 (755)
...+....|+|+| .++.. .++.|.++++.++...+.-. . -+.-..+-|+| |+++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEE
Confidence 4557778999999 44444 56889999988775443321 1 11235678999 888877654
Q ss_pred CC-C-----------------------------------cEEEEEcCCCeEEE--e----ccCCcceEEEEEccCCCeEE
Q 004410 449 ID-G-----------------------------------KVRIWEVRRCQVVD--Y----TDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 449 ~D-g-----------------------------------~V~iwdl~~~~~~~--~----~~~~~~V~~v~~spdg~~la 486 (755)
.| . .+.|+|+.+++... . ......+..+.|.++++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 33 2 23334444443321 1 12344588899999998554
Q ss_pred EEeC--CC---cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc-CCCCCEEEEEECCCcEEEEECCcceeeEEEe
Q 004410 487 VGTM--TG---NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS-PSDPSKVIVTSADSLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 487 ~gs~--dg---~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs-p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 560 (755)
+.-. +. .+.++|..++...........+- -..-..+.|. +.+..++.....+|.-+|+-........+.
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W----v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~- 274 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW----VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ- 274 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS----SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE-
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcc----eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec-
Confidence 4332 22 26777887765543322111111 1122344554 656677777778887666654433333222
Q ss_pred eeccCCceE-EEEEecCCCEEE-EEeCCC----cEEEEEcC
Q 004410 561 AFRVAGSQM-FATFTSDGKHVV-SPSEDS----NIYIWNYS 595 (755)
Q Consensus 561 ~~~~~~~v~-~l~fspdg~~L~-sgs~Dg----~I~iWd~~ 595 (755)
+....-.|. -+.++++++.|+ +|..++ .|+.-++.
T Consensus 275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 133344554 467888877655 554432 45555555
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.065 Score=58.74 Aligned_cols=200 Identities=14% Similarity=0.169 Sum_probs=137.9
Q ss_pred EEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEcCCCeEEEe
Q 004410 392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 392 ~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~---Dg~V~iwdl~~~~~~~~ 466 (755)
..++.++.+ .+++...+..|.+.|..+...+....-......++++| ++..++.+.. ++++.+.|..+..+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 456777777 44555557999999998888888887666888999999 6766655544 68899999998888765
Q ss_pred ccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC---
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD--- 542 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D--- 542 (755)
......-..++++|+|+.+++.. .++.|.++|..+..... ... .........-..+.+.| ++.++.+....
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~---~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~ 230 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV---GSLVGVGTGPAGIAVDP-DGNRVYVANDGSGS 230 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc---ccccccCCCCceEEECC-CCCEEEEEeccCCC
Confidence 43333348999999999777765 78899999988776652 110 00111233456788999 66655554433
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-CcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-SNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-g~I~iWd~~~~~ 598 (755)
+.+.+.|..+............. ....+.++|+|+++.+.... +.+.+-|..+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 58888887764433331112222 45678899999999888544 788888887765
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.27 E-value=0.057 Score=53.50 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=82.9
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-eccCCcceEEEEEc
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYC 479 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~~~~~V~~v~~s 479 (755)
+++.|+..+.+.--|..+|+.+-.......|.+-+.- -+++++.|...|.+++.+..++.... +......-......
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 7888889999999999999887766566667666654 47889999999999999999996553 33333322345567
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 480 pdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
+++..+..|+.|++.+..|.++...+..
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEe
Confidence 8999999999999999999998887764
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.25 E-value=0.019 Score=49.86 Aligned_cols=99 Identities=21% Similarity=0.286 Sum_probs=71.6
Q ss_pred EEEEEEc---CCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 391 VLDLSWS---KNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 391 V~~l~~s---~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
|.+|++. .+| .|+.|+.|..||+|+- ...+..+.....|++++-.. ...|+.+..+|+|-+|+-.... ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~Rl-WR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQRL-WR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCccee-ee
Confidence 4555554 354 8999999999999974 57788888889999998776 4789999999999999864322 22
Q ss_pred eccCCcceEEEEEcc-CC---CeEEEEeCCCcEE
Q 004410 466 YTDIREIVSAVCYCP-DG---KGGIVGTMTGNCR 495 (755)
Q Consensus 466 ~~~~~~~V~~v~~sp-dg---~~la~gs~dg~I~ 495 (755)
...+..++++++.. ++ ..|++|-.+|.|-
T Consensus 77 -iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 -IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22334466665544 32 3688888888764
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.23 E-value=0.045 Score=58.61 Aligned_cols=170 Identities=12% Similarity=0.171 Sum_probs=103.5
Q ss_pred CcEEEEeCCCC-----eEE--EEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe-EEEeccCCc--ceEEEEE
Q 004410 409 KTVRLWQVGID-----RCL--RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYTDIRE--IVSAVCY 478 (755)
Q Consensus 409 g~V~iWdl~s~-----~~~--~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-~~~~~~~~~--~V~~v~~ 478 (755)
|.|.++++... +.. ......+.|++|+-. ++. |+.+. .+.|.+|++...+ +.....+.. .++++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 222 223478999999865 344 44433 5899999999887 664333333 4555554
Q ss_pred ccCCCeEEEEeCCCcEEEEECCC--CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc---
Q 004410 479 CPDGKGGIVGTMTGNCRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV--- 553 (755)
Q Consensus 479 spdg~~la~gs~dg~I~iwD~~~--~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~--- 553 (755)
.+++|++|.....+.++..+. .++... . .......++++.|.+ ++..++++..+|.+.++.....
T Consensus 138 --~~~~I~vgD~~~sv~~~~~~~~~~~l~~v------a-~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~ 207 (321)
T PF03178_consen 138 --FKNYILVGDAMKSVSLLRYDEENNKLILV------A-RDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPN 207 (321)
T ss_dssp --ETTEEEEEESSSSEEEEEEETTTE-EEEE------E-EESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SS
T ss_pred --cccEEEEEEcccCEEEEEEEccCCEEEEE------E-ecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcc
Confidence 466999999988888775443 223221 1 222345689999987 3369999999999999886521
Q ss_pred ---ee-eE-EEeeeccCCceEEE---EEec--CCC------EEEEEeCCCcEEEE
Q 004410 554 ---VG-KF-KASAFRVAGSQMFA---TFTS--DGK------HVVSPSEDSNIYIW 592 (755)
Q Consensus 554 ---~~-~~-~~~~~~~~~~v~~l---~fsp--dg~------~L~sgs~Dg~I~iW 592 (755)
.. .+ ..........|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 208 ~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 208 SRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 11 11 11223445667777 4445 222 48888899999844
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.19 E-value=0.27 Score=54.42 Aligned_cols=65 Identities=15% Similarity=0.031 Sum_probs=43.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
+....+....++.+.+.+-...+. ....+++..+++||+|++||.-+.+|.+.+....-.+...+
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e 253 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCE 253 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEE
Confidence 445555555556666444332211 22346899999999999999999999999988765555443
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.0022 Score=71.44 Aligned_cols=164 Identities=11% Similarity=0.090 Sum_probs=111.1
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc--CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~--~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
+...|.--++.. .+.+++.|+.-|.|++|+-..++...... ....+..++.+++..++|+|+..|.|.+|.+.....
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 333444344444 78999999999999999998887664443 566778889999999999999999999999887433
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc-eeeE-EEeeeccCCceEEEEEecCCCEEEE
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV-VGKF-KASAFRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~-~~~~-~~~~~~~~~~v~~l~fspdg~~L~s 582 (755)
... +.+....+.|...|++++|++ ++..+++|...|+|..-.+... .... ........+.|..+... ++.+|++
T Consensus 111 ~~~--~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVS 186 (726)
T KOG3621|consen 111 RDL--DYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVS 186 (726)
T ss_pred Ccc--eeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHh
Confidence 221 112222344788999999999 9999999999999998876651 1111 11113345566666654 3444444
Q ss_pred EeCCCcEEEEEcCCC
Q 004410 583 PSEDSNIYIWNYSNQ 597 (755)
Q Consensus 583 gs~Dg~I~iWd~~~~ 597 (755)
... .-.+++++.+
T Consensus 187 tl~--r~~Lc~tE~e 199 (726)
T KOG3621|consen 187 TLT--RCILCQTEAE 199 (726)
T ss_pred hhh--hhheeecchh
Confidence 433 2344555444
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.014 Score=64.38 Aligned_cols=110 Identities=21% Similarity=0.264 Sum_probs=70.9
Q ss_pred EEEEcCCC--eEEEEeCCCc--EEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CC--cEEEEEcCCCeEEE
Q 004410 393 DLSWSKNG--FLLSSSADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVD 465 (755)
Q Consensus 393 ~l~~s~~~--~L~s~s~Dg~--V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg--~V~iwdl~~~~~~~ 465 (755)
.-+|+||| .+++...|+. |.+.|+.+++..+.....+.-+.-.|+| +|+.++-.+. .| .|.++++..+....
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 46799999 4555666665 5566887777444222223333567899 8887766554 34 47777888776654
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCC-Cc--EEEEECCCCe
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMT-GN--CRFYDIKDNQ 503 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~d-g~--I~iwD~~~~~ 503 (755)
.......-..-.|+|||++|+..+.. |. |.++|+.++.
T Consensus 321 iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 321 LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 44443333378899999999887753 44 6666666554
No 355
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.14 E-value=0.89 Score=53.37 Aligned_cols=340 Identities=11% Similarity=0.133 Sum_probs=166.5
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
...++++...+.+..+|.+...-..-.....+.+.+..++.+-..-..|+..-++| +|.+|+.-|.=++-.+.+.....
T Consensus 263 ~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~g 341 (1096)
T KOG1897|consen 263 GRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVG 341 (1096)
T ss_pred ccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc-eEEEeccCCceeeEEccccCCCC
Confidence 34567888888888888876654431111122222333455555666677766665 78888887766666554432211
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee-eecCCceEEEeCCcceeccCccceEecCCCCCEEEEE--Ec
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL-RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS--WS 397 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~--~s 397 (755)
.....-.. ......-..+..++.....-.....+ ....++...++.+.. .+.+.....+.| -..++.+. +.
T Consensus 342 sy~~ilet----~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi-~I~e~A~i~l~G-ikg~w~lk~~v~ 415 (1096)
T KOG1897|consen 342 SYVVILET----FVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGI-GIDELASIDLPG-IKGMWSLKSMVD 415 (1096)
T ss_pred chhhhhhh----cccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccc-ccceeeEeecCC-ccceeEeecccc
Confidence 00000000 00000001111112211111111111 222333333333221 111112223334 33455555 33
Q ss_pred C--CCeEEEEeCCCcEEEEeCCCC-eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceE
Q 004410 398 K--NGFLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS 474 (755)
Q Consensus 398 ~--~~~L~s~s~Dg~V~iWdl~s~-~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~ 474 (755)
+ +.+|+.+=. +.-++..+... +.............+..+-..++.|+=.. ...||+++-. +..-.|... ..++
T Consensus 416 ~~~d~ylvlsf~-~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~-~~~~~W~~p-~~~t 491 (1096)
T KOG1897|consen 416 ENYDNYLVLSFI-SETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA-GLRSEWRPP-GKIT 491 (1096)
T ss_pred ccCCcEEEEEec-cceEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch-hhhhcccCC-CceE
Confidence 2 223333322 22334444322 11111122333344444443444433332 3457777765 333344443 3344
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC--CCC---EEEEEECCCcEEEEE
Q 004410 475 AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS--DPS---KVIVTSADSLVRVLC 549 (755)
Q Consensus 475 ~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~--d~~---~l~s~s~Dg~I~iwd 549 (755)
....+.+...+++++.++.+...++..+.+.... .......|.|+.++|. +.+ ++++|..+..+.+.-
T Consensus 492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~-------~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~ 564 (1096)
T KOG1897|consen 492 IGVVSANASQVVVAGGGLALFYLEIEDGGLREVS-------HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILT 564 (1096)
T ss_pred EEEEeecceEEEEecCccEEEEEEeeccceeeee-------eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEE
Confidence 4445556668888887888888888777644322 2223468999999974 334 889998887766553
Q ss_pred CC-cceeeE--EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 550 GE-NVVGKF--KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 550 ~~-~~~~~~--~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.. +..... ......-+..|.-.+|-.|..||.++..||.++-|.+....
T Consensus 565 ~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 565 FLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred ECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEccc
Confidence 22 211111 11112234456667777788999999999999877776544
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.10 E-value=0.0087 Score=69.85 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=99.5
Q ss_pred CCCEEEEE-eCCCcEEEEEcCCCeEEE-eccCCcceEEEEEccC-------CCeEEEEeCCCcEEEEECCCCe--Eeeee
Q 004410 440 DDNYFISG-SIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPD-------GKGGIVGTMTGNCRFYDIKDNQ--LYQQN 508 (755)
Q Consensus 440 d~~~l~sg-s~Dg~V~iwdl~~~~~~~-~~~~~~~V~~v~~spd-------g~~la~gs~dg~I~iwD~~~~~--~~~~~ 508 (755)
+.++|+.- .....|+-.|+..++++. |..+... .-..|.|+ ....++|-.+..+..||.+-.. ++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-- 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-- 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee--
Confidence 44454443 356789999999999994 5554433 23445553 3456788889999999998532 221
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
-+.+........+|++-. ...+||+|+.+|.||+||... ...+....+...+|+.+..+.||++|++.+. ..
T Consensus 569 ---~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g--~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-ty 640 (794)
T PF08553_consen 569 ---SQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLG--KRAKTALPGLGDPIIGIDVTADGKWILATCK-TY 640 (794)
T ss_pred ---ccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccc--hhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ce
Confidence 122223345667777766 567899999999999999433 2233333566789999999999999987764 57
Q ss_pred EEEEEcC
Q 004410 589 IYIWNYS 595 (755)
Q Consensus 589 I~iWd~~ 595 (755)
|.|++..
T Consensus 641 LlLi~t~ 647 (794)
T PF08553_consen 641 LLLIDTL 647 (794)
T ss_pred EEEEEEe
Confidence 8888864
No 357
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.10 E-value=0.042 Score=62.11 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=76.9
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCC-----CeEEEEEecCCcEEEEEEeeCCCCEEEEE-eCCCcEEEEEcCCCeE------
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGI-----DRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQV------ 463 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s-----~~~~~~~~h~~~V~~i~fsp~d~~~l~sg-s~Dg~V~iwdl~~~~~------ 463 (755)
.++| +... .++.|.+.|..+ .+.+..+.-......+.++| |+++++++ ..+.+|.|.|+.+.+.
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 4456 3332 367899999998 46777777888899999999 88877654 5689999999987542
Q ss_pred ------EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC
Q 004410 464 ------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 464 ------~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~ 501 (755)
+............+|.++|+...+...|..|..||+..
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22222334456788999998888888999999999986
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.04 E-value=0.53 Score=48.95 Aligned_cols=235 Identities=14% Similarity=0.079 Sum_probs=127.0
Q ss_pred cCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeee
Q 004410 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323 (755)
Q Consensus 244 spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~ 323 (755)
...++.|+.|+.+| +.+++........ -..+...|..|...|+-+.|++-+ |+.+.++++..-.......
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~--------~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPT--------RILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccce--------eEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccc
Confidence 34678899999998 8888872111111 111333499999999877777665 5999999987654321100
Q ss_pred cCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE--EcCCC-
Q 004410 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS--WSKNG- 400 (755)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~--~s~~~- 400 (755)
...... . ............+...+ -...+
T Consensus 74 ~~~~~~--------------------~----------------------------~~~~~~~~~~~~v~~f~~~~~~~~~ 105 (275)
T PF00780_consen 74 PLAFPK--------------------S----------------------------RSLPTKLPETKGVSFFAVNGGHEGS 105 (275)
T ss_pred cccccc--------------------c----------------------------ccccccccccCCeeEEeeccccccc
Confidence 000000 0 00000001112233333 11223
Q ss_pred eEEEEeCCCcEEEEeCCCC-----eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCC-----
Q 004410 401 FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR----- 470 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~-----~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~----- 470 (755)
..+.....++|.+|..... +..+.+.....+.+++|.+ +.++.|.. ....+.|+.++....+....
T Consensus 106 ~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~---~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~ 181 (275)
T PF00780_consen 106 RRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG---NKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSS 181 (275)
T ss_pred eEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC---CEEEEEeC-CceEEEecCCCCceEEeCccCCcch
Confidence 4455555668888876542 5667777889999999974 67777764 44888899977665443221
Q ss_pred --------cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 471 --------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 471 --------~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
.++..+.. +++.+|++ . +..-.+.|..+... ....+. . ......+++.. .+|++...
T Consensus 182 ~~~~~~~~~~~~~~~~-~~~e~Ll~-~-~~~g~fv~~~G~~~-r~~~i~------W-~~~p~~~~~~~---pyli~~~~- 246 (275)
T PF00780_consen 182 FKSRNSSSKPLGIFQL-SDNEFLLC-Y-DNIGVFVNKNGEPS-RKSTIQ------W-SSAPQSVAYSS---PYLIAFSS- 246 (275)
T ss_pred hhhcccCCCceEEEEe-CCceEEEE-e-cceEEEEcCCCCcC-cccEEE------c-CCchhEEEEEC---CEEEEECC-
Confidence 12333333 33444443 2 33444445543322 111111 1 12445555543 45555555
Q ss_pred CcEEEEECCccee
Q 004410 543 SLVRVLCGENVVG 555 (755)
Q Consensus 543 g~I~iwd~~~~~~ 555 (755)
+.|.||++.+...
T Consensus 247 ~~iEV~~~~~~~l 259 (275)
T PF00780_consen 247 NSIEVRSLETGEL 259 (275)
T ss_pred CEEEEEECcCCcE
Confidence 5599999887643
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0027 Score=69.92 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=77.6
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceE-EEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS-AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~-~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
-...|.-+.|+| .-.++|.+..+|.|.++.+.-.++..+.-+...++ ++||.|||+.||+|-.||+|++.|+.++..+
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 445688899999 89999999999999999999666666665667777 9999999999999999999999999998876
Q ss_pred eeeeEEecccccCCCCCeEEEEEcC
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
... .......|.++-|.+
T Consensus 98 ~~~-------~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSF-------LFSVETDISKGIWDR 115 (665)
T ss_pred ecc-------ccccccchheeeccc
Confidence 532 122345677777764
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.01 E-value=0.017 Score=67.52 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=91.8
Q ss_pred EeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeC------CCCEEEEEeCCCcEEEEEcCCC--eEEE----eccCCcc
Q 004410 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRC--QVVD----YTDIREI 472 (755)
Q Consensus 405 ~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~------d~~~l~sgs~Dg~V~iwdl~~~--~~~~----~~~~~~~ 472 (755)
......|+-.|++.|+.+..+.....+.-..+.|. +....+.|-.+..|..||.|-. +++. .......
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 34568899999999999999973333323334441 2345677888899999999863 3442 2234456
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
.+|++-+.+| +||+|+.+|.|++||--+ +. . ......-+.+|.+|..+. ||++|++++.. .+.+++
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~---A----KT~lp~lG~pI~~iDvt~-DGkwilaTc~t-yLlLi~ 645 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYDRLG-KR---A----KTALPGLGDPIIGIDVTA-DGKWILATCKT-YLLLID 645 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeecccc-hh---h----hhcCCCCCCCeeEEEecC-CCcEEEEeecc-eEEEEE
Confidence 7888888777 789999999999999432 11 1 112233468999999999 88988877654 444444
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.99 E-value=0.65 Score=53.15 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=101.3
Q ss_pred CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCC-CceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTD-PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 296 g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
+..|+.++.++.|.-.|..+|+.+..+...... .............+ .+.....+....+..++.++....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~--------av~~~~v~v~t~dg~l~ALDa~TG 140 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGV--------ALYDGKVFFGTLDARLVALDAKTG 140 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccc--------eEECCEEEEEcCCCEEEEEECCCC
Confidence 446667777888999999999888776543211 00000000000000 011112233344455555554332
Q ss_pred eccCccceEec--CCC--CCEEEEEEcCCCeEEEEe------CCCcEEEEeCCCCeEEEEEec--CC-------------
Q 004410 375 RLLEKPLHEFQ--GHS--SEVLDLSWSKNGFLLSSS------ADKTVRLWQVGIDRCLRVFSH--NN------------- 429 (755)
Q Consensus 375 ~~~~~~~~~~~--gh~--~~V~~l~~s~~~~L~s~s------~Dg~V~iWdl~s~~~~~~~~h--~~------------- 429 (755)
++ +.... .+. ..+.+--..-++.++.+. .+|.|..+|+++++.+-.+.. ..
T Consensus 141 k~----~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~ 216 (527)
T TIGR03075 141 KV----VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG 216 (527)
T ss_pred CE----EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence 22 11111 111 011110001144455443 268899999999988766531 00
Q ss_pred -----------------cE-EEEEEeeCCCCEEEEEeCC-----C-----------cEEEEEcCCCeEE-Eec--cCC--
Q 004410 430 -----------------YV-TSVAFNPVDDNYFISGSID-----G-----------KVRIWEVRRCQVV-DYT--DIR-- 470 (755)
Q Consensus 430 -----------------~V-~~i~fsp~d~~~l~sgs~D-----g-----------~V~iwdl~~~~~~-~~~--~~~-- 470 (755)
.+ ..+.+.| ..++++.+..+ + .|.-.|+++++++ .++ .|.
T Consensus 217 ~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~w 295 (527)
T TIGR03075 217 EPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEW 295 (527)
T ss_pred ccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCc
Confidence 01 1235666 45556555421 2 5777788888877 222 221
Q ss_pred -----cceEEEEEccCCC---eEEEEeCCCcEEEEECCCCeEe
Q 004410 471 -----EIVSAVCYCPDGK---GGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 471 -----~~V~~v~~spdg~---~la~gs~dg~I~iwD~~~~~~~ 505 (755)
....-+.+..+|+ .++.++.+|.+++.|-.+++++
T Consensus 296 D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 296 DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1122233335776 7788999999999999999886
No 362
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.97 E-value=0.0014 Score=44.13 Aligned_cols=35 Identities=40% Similarity=0.904 Sum_probs=31.8
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
..+.+|...|.++.|.+++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667899999999999999999999999999996
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.28 Score=51.74 Aligned_cols=179 Identities=15% Similarity=0.092 Sum_probs=97.3
Q ss_pred EcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe------cCCcEEEEEEeeCCCCEEEEEeC-----------CCcEEEEEc
Q 004410 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSI-----------DGKVRIWEV 458 (755)
Q Consensus 396 ~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~------h~~~V~~i~fsp~d~~~l~sgs~-----------Dg~V~iwdl 458 (755)
....+.|+++.. .+.+++.+++..+..+. .....+.+.+.| ++.+.++... -|.|+.+|.
T Consensus 74 ~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p 150 (307)
T COG3386 74 IDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP 150 (307)
T ss_pred ecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC
Confidence 334445555543 35667766665533331 335567788888 7777666444 133444454
Q ss_pred CCCeEE-EeccCCcceEEEEEccCCCeEEEEeCC-CcEEEEECCC--CeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 459 RRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMT-GNCRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 459 ~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~d-g~I~iwD~~~--~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
.+..+ ....+-..-+.|+|+||++.|+.+... +.|+-|++.. +..-..... . .........-.++... ++.
T Consensus 151 -~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~-~--~~~~~~G~PDG~~vDa-dG~ 225 (307)
T COG3386 151 -DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF-V--DFDEEPGLPDGMAVDA-DGN 225 (307)
T ss_pred -CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE-E--EccCCCCCCCceEEeC-CCC
Confidence 34444 344445667889999999988887654 7788888763 111110000 0 0111223344455555 555
Q ss_pred EEEEEECCC-cEEEEECCcceeeEEEeeeccCCceEEEEEe-cCCCEEEEEeC
Q 004410 535 KVIVTSADS-LVRVLCGENVVGKFKASAFRVAGSQMFATFT-SDGKHVVSPSE 585 (755)
Q Consensus 535 ~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs-pdg~~L~sgs~ 585 (755)
+.+++..+| .|.+|+.. ....... .-....+++++|- ++.+.|+..+.
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i--~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEI--KLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEE--ECCCCCCccceEeCCCcCEEEEEec
Confidence 554444443 88889877 2222222 2122567788884 45565554443
No 364
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.90 E-value=0.26 Score=56.05 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=111.0
Q ss_pred CeEEEEeCCCcEEEEeCCCCeEEEEEecCCc------EE-EEEEeeCCCCEEEEEe---------CCCcEEEEEcCCCeE
Q 004410 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNY------VT-SVAFNPVDDNYFISGS---------IDGKVRIWEVRRCQV 463 (755)
Q Consensus 400 ~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~------V~-~i~fsp~d~~~l~sgs---------~Dg~V~iwdl~~~~~ 463 (755)
+.++.++.++.|+-+|.++++.+-.+..... +. ...+. +.+++.++ .+|.|..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 5777888899999999999999877753332 11 12222 24455554 367899999999887
Q ss_pred EEeccCC-c--------------------ce-EEEEEccCCCeEEEEeCCC------------------cEEEEECCCCe
Q 004410 464 VDYTDIR-E--------------------IV-SAVCYCPDGKGGIVGTMTG------------------NCRFYDIKDNQ 503 (755)
Q Consensus 464 ~~~~~~~-~--------------------~V-~~v~~spdg~~la~gs~dg------------------~I~iwD~~~~~ 503 (755)
+-..... . .+ ...++.+.+..+++++.++ .|.-+|+.+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 7322111 0 01 1345555667888887665 69999999999
Q ss_pred EeeeeeEEecccc--cCCCC-CeEEEEEcCCCCC---EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC
Q 004410 504 LYQQNQICLQGKK--KLPGK-RITGFQFSPSDPS---KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 504 ~~~~~~~~~~~~~--~~~~~-~I~~v~fsp~d~~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg 577 (755)
.....+....... ..... .+..+. ..++. .+++++.+|.+..+|..+.......... ...++.+|
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~--~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~-- 338 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK--PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP-- 338 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc--ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--
Confidence 8865443111000 00001 111111 11232 6788889999999999987776665322 11223333
Q ss_pred CEEEEE------------------eCCCcEEEEEcCCCC
Q 004410 578 KHVVSP------------------SEDSNIYIWNYSNQD 598 (755)
Q Consensus 578 ~~L~sg------------------s~Dg~I~iWd~~~~~ 598 (755)
..++.+ ..+|.|.-.|+.+++
T Consensus 339 ~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 339 GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 223322 235778888888887
No 365
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.13 Score=51.93 Aligned_cols=249 Identities=18% Similarity=0.243 Sum_probs=135.7
Q ss_pred ceeecCCCC-eeEEeeCCCe-EEEEECCCCccccc-ccccceeeecccccEEEEEEecCCCEEEEEcC-----CCcEEEE
Q 004410 240 SATLKPGDH-ELTLGQRMRR-VRVHPVKKQSRELS-SLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-----DGTVRVW 311 (755)
Q Consensus 240 ~~~~spdg~-~lasgs~dg~-V~Vw~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-----Dg~I~vW 311 (755)
.++++|.-. -++.+-..|+ ..|+|......... .-...+.+.+|. .|||||.+|...-. -|.|-||
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEE
Confidence 367777655 4555666665 45677664432211 112234566775 59999999987643 3789999
Q ss_pred EccCC-eeeeeeecCCCCCceeEEeeCCCCceeEEe-ecCc-ceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 312 KVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPID-VDKE-KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 312 dv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
|...+ +.+.++..+.-.+.-+.+..++...+..-. +... .......-..+-...++..+....++.+|....-..+.
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 98754 456667776666666666666543322211 0000 11111111111122233333333333333222222445
Q ss_pred CCEEEEEEcCCCeEEEEeC-CC-----cEEEEeCCCCeEEEEEe--------cCCcEEEEEEeeCCCCEEEEEe-CCCcE
Q 004410 389 SEVLDLSWSKNGFLLSSSA-DK-----TVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGS-IDGKV 453 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~-Dg-----~V~iWdl~s~~~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs-~Dg~V 453 (755)
-.|..++.-++|.++.+.. .| --.+=....++.+..+. ...+|-+|+.+. +..+++..+ ..+..
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRA 304 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeE
Confidence 5677788888875554432 11 11111223344444442 457889999987 555555444 45568
Q ss_pred EEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEE
Q 004410 454 RIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (755)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD 498 (755)
.+||..++.++......+ +.-.-+....+++.+.+|.|.+|.
T Consensus 305 vi~da~tG~vv~~a~l~d---aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 305 VIWDAATGAVVSEAALPD---AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEcCCCcEEecccccc---cccceeccCceEEecCCceEEecc
Confidence 899999999986443322 222334556788888899998884
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.68 Score=48.82 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=84.8
Q ss_pred EEEEEEcCCCeEEEEeCC------------CcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEe-CCCcEEEE
Q 004410 391 VLDLSWSKNGFLLSSSAD------------KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS-IDGKVRIW 456 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s~D------------g~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iw 456 (755)
.+++...|+|.+..+.+. |.|+.+|. .+..++.+. +-..-+.|+|+| |++.|+.+. ..+.|.-|
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEE
Confidence 344555666644444433 23444443 444544443 355668899999 776665554 45788888
Q ss_pred EcCC--C----e--EEEeccCCcceEEEEEccCCCeEEEEeCCC-cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 457 EVRR--C----Q--VVDYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 457 dl~~--~----~--~~~~~~~~~~V~~v~~spdg~~la~gs~dg-~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
++.. + + .+......+..-.++...+|.+-+++...| .|.+|+.. ++++....+ +...+++++
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l--------P~~~~t~~~ 261 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL--------PVKRPTNPA 261 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC--------CCCCCccce
Confidence 7762 1 1 222333445667788888888776555554 89999999 776654332 335678888
Q ss_pred EcCCCCCEEEEEECC
Q 004410 528 FSPSDPSKVIVTSAD 542 (755)
Q Consensus 528 fsp~d~~~l~s~s~D 542 (755)
|--.+.+.|++++..
T Consensus 262 FgG~~~~~L~iTs~~ 276 (307)
T COG3386 262 FGGPDLNTLYITSAR 276 (307)
T ss_pred EeCCCcCEEEEEecC
Confidence 854355655555543
No 367
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.64 E-value=0.95 Score=46.07 Aligned_cols=187 Identities=9% Similarity=0.042 Sum_probs=110.1
Q ss_pred CCEEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCeEEEEEecC--CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 389 SEVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg--~V~iWdl~s~~~~~~~~h~--~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
.-...+.|..++ .+-+.+.-| .|+.+|+.+++.+...... ..--.|+.. ++.++...=.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 345678887777 666666655 7999999999988776533 233444444 455555666789999999999888
Q ss_pred EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
+........-..++ .||+.|+.......++++|..+.+......+...+. .-..++-+.|. ++...+=.=...
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~---pv~~LNELE~i--~G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR---PVSNLNELEYI--NGKIYANVWQTD 195 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE---E---EEEEEEE--TTEEEEEETTSS
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCE---ECCCcEeEEEE--cCEEEEEeCCCC
Confidence 75555555666666 578889988888899999999888777766654432 22345556665 333333333344
Q ss_pred cEEEEECCcceeeEEEee-------------eccCCceEEEEEecCCCEEEEEe
Q 004410 544 LVRVLCGENVVGKFKASA-------------FRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~-------------~~~~~~v~~l~fspdg~~L~sgs 584 (755)
.|...|..+....-.... .......+.+++.|..+.|...+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 444455444322211100 01134678999988776655544
No 368
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.63 E-value=0.095 Score=45.59 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=71.1
Q ss_pred EEEEEEeeCCC---CEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 431 VTSVAFNPVDD---NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 431 V~~i~fsp~d~---~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
|++|++...++ +.|++|+.|..||+|+-. .++.-....+.|++++.... ..++.+..+|+|-+|+-....-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi- 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI- 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee-
Confidence 67777765433 689999999999999865 45555566778888888776 578999999999999874332111
Q ss_pred eeEEecccccCCCCCeEEEEEcCCC---CCEEEEEECCCcEE
Q 004410 508 NQICLQGKKKLPGKRITGFQFSPSD---PSKVIVTSADSLVR 546 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~fsp~d---~~~l~s~s~Dg~I~ 546 (755)
.....++++++...+ -..|++|=.+|.|-
T Consensus 78 ----------KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 ----------KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ----------ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 122446666665422 24678887777764
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.58 E-value=1.7 Score=48.22 Aligned_cols=206 Identities=17% Similarity=0.102 Sum_probs=97.3
Q ss_pred cEEEEEEecCCCEEEEE-cCC----CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 286 SILTMKFSLDGQYLASG-GED----GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSg-s~D----g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.+..+.+||||++||.+ +.. ..|+|.|+.+++.+...-. ......+.|..++.. ++........... ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~-~~y~~~~~~~~~~----~~ 198 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKG-FFYTRFDEDQRTS----DS 198 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSE-EEEEECSTTTSS-----CC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCE-EEEEEeCcccccc----cC
Confidence 44567899999998865 333 3599999999977653211 111112444443332 2222222211100 00
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCC--CEEEEEEcCCC-eEE-EEeCC---CcEEEEeCCCC-----eEEEEEecC
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-FLL-SSSAD---KTVRLWQVGID-----RCLRVFSHN 428 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~--~V~~l~~s~~~-~L~-s~s~D---g~V~iWdl~s~-----~~~~~~~h~ 428 (755)
.....+..+...... ......+..... ....+..++++ +|+ ..... ..|.+.|+..+ .........
T Consensus 199 ~~~~~v~~~~~gt~~--~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQ--SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-G--GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCCh--HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 001111111111110 111122222222 26678899998 443 34333 34788888775 444444555
Q ss_pred CcEEEEEEeeCCCCEEEEEe---CCCcEEEEEcCCCe----EEEeccCCcceEEEEEccCCCeEEEEe-CCC--cEEEEE
Q 004410 429 NYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPDGKGGIVGT-MTG--NCRFYD 498 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs---~Dg~V~iwdl~~~~----~~~~~~~~~~V~~v~~spdg~~la~gs-~dg--~I~iwD 498 (755)
..+....-+. .+.+++... ..+.|...++.... ...+..+...+.-..+...+.+|++.. .++ .|++|+
T Consensus 277 ~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 277 DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 5555444444 455555443 23567777877654 223444444333333444555565544 344 388899
Q ss_pred CC
Q 004410 499 IK 500 (755)
Q Consensus 499 ~~ 500 (755)
+.
T Consensus 356 ~~ 357 (414)
T PF02897_consen 356 LD 357 (414)
T ss_dssp TT
T ss_pred CC
Confidence 98
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0095 Score=65.73 Aligned_cols=91 Identities=14% Similarity=0.269 Sum_probs=76.0
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEE-EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT-SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~-~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
...|.-+.|+|.- .+|++..+|.|.+..+. .+.+.++. ++..++ +++|.| ||++++.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3457789999988 99999999999999888 67777776 777777 999999 9999999999999999999998777
Q ss_pred Ee--ccCCcceEEEEEcc
Q 004410 465 DY--TDIREIVSAVCYCP 480 (755)
Q Consensus 465 ~~--~~~~~~V~~v~~sp 480 (755)
.- ......|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 53 44456677777753
No 371
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.57 E-value=1.5 Score=47.54 Aligned_cols=143 Identities=18% Similarity=0.220 Sum_probs=73.3
Q ss_pred CcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeC--------------------CCcEEEEEcCCCeEE
Q 004410 409 KTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSI--------------------DGKVRIWEVRRCQVV 464 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~--------------------Dg~V~iwdl~~~~~~ 464 (755)
|.+.+.|-++.+.+.... ....-..+-+.| ..+.++|... ..+|.+||+.+.+.+
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~ 235 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL 235 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe
Confidence 557788888877777764 244567788889 8888888642 357999999999998
Q ss_pred EeccCC---cceEEEEEccC--CCeEEEE-eCCCcE-EEEECCCCeEeeeeeEEecccccC-------------CCCCeE
Q 004410 465 DYTDIR---EIVSAVCYCPD--GKGGIVG-TMTGNC-RFYDIKDNQLYQQNQICLQGKKKL-------------PGKRIT 524 (755)
Q Consensus 465 ~~~~~~---~~V~~v~~spd--g~~la~g-s~dg~I-~iwD~~~~~~~~~~~~~~~~~~~~-------------~~~~I~ 524 (755)
+..+.. ..+..|.|..+ ..+-++| .-..+| ++|....+.-..+..+.+...... ...-|+
T Consensus 236 Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 236 QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 766655 35667777654 3343333 334444 445546665444444444332110 124589
Q ss_pred EEEEcCCCCCEEEEEE-CCCcEEEEECCcc
Q 004410 525 GFQFSPSDPSKVIVTS-ADSLVRVLCGENV 553 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s-~Dg~I~iwd~~~~ 553 (755)
.+.+|. |.++|.+.. .+|.|+-||+.+.
T Consensus 316 DI~iSl-DDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 316 DILISL-DDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -EEE-T-TS-EEEEEETTTTEEEEEE-SST
T ss_pred eEEEcc-CCCEEEEEcccCCcEEEEecCCC
Confidence 999999 556655554 6899999998874
No 372
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.53 E-value=1.7 Score=47.71 Aligned_cols=188 Identities=12% Similarity=0.092 Sum_probs=102.7
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC--------------------
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-------------------- 460 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-------------------- 460 (755)
++..-+.||++.+++-+.......+..---...+.|.+ ..+.|++++.+..|.-|....
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~ 225 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS 225 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence 78888999999999987666555554433445577888 788899999888888886531
Q ss_pred CeEE--Ee-ccCCcceEEEEEcc---CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEE--EEcCCC
Q 004410 461 CQVV--DY-TDIREIVSAVCYCP---DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGF--QFSPSD 532 (755)
Q Consensus 461 ~~~~--~~-~~~~~~V~~v~~sp---dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v--~fsp~d 532 (755)
++.+ .| ....+.+..|.... ....+++-+ ..++.+.+.. |.+....++.... ..-....+ ...|..
T Consensus 226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G~l~~~krLd~~p----~~~~~Y~~~~~~~~~~ 299 (418)
T PF14727_consen 226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-GSLRFQKRLDYNP----SCFCPYRVPWYNEPST 299 (418)
T ss_pred cccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-CeEEEEEecCCce----eeEEEEEeecccCCCC
Confidence 1111 11 22334444444333 223333333 3456666654 3444332221100 00001111 112222
Q ss_pred CCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
...+++++.++++.||...+.....+. ....-.+.-..|..-...|++-+.+|.|.+-=+-+.
T Consensus 300 ~~~llV~t~t~~LlVy~d~~L~WsA~l--~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 300 RLNLLVGTHTGTLLVYEDTTLVWSAQL--PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred ceEEEEEecCCeEEEEeCCeEEEecCC--CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 236999999999999986654433332 111112222233333457788888888877665443
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.03 Score=60.66 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=98.5
Q ss_pred CCCE-EEEEeCCCcEEEEEcCCCeEEE-eccCCcceEEEEEccCCCe-------EEEEeCCCcEEEEECCCCeEeeeeeE
Q 004410 440 DDNY-FISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKG-------GIVGTMTGNCRFYDIKDNQLYQQNQI 510 (755)
Q Consensus 440 d~~~-l~sgs~Dg~V~iwdl~~~~~~~-~~~~~~~V~~v~~spdg~~-------la~gs~dg~I~iwD~~~~~~~~~~~~ 510 (755)
+.++ |.++.....|+-.|++.|+++. |.-+.. |+-+.+.|+.+. -++|-.+..|.-||++-...- ...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc--eee
Confidence 3344 4456666789999999999995 544444 888888887542 366778899999999843321 000
Q ss_pred EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEE
Q 004410 511 CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590 (755)
Q Consensus 511 ~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~ 590 (755)
..+++.........|++-. ...+|++|+.+|.||+||-..... +....+...+|..+..+.||++|++.+. ..+.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~A--KTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLl 495 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRA--KTALPGLGDAIKHVDVTADGKWILATCK-TYLL 495 (644)
T ss_pred eeeccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhh--hhcccccCCceeeEEeeccCcEEEEecc-cEEE
Confidence 1223333333445555544 567999999999999999632222 2222566789999999999999887664 5666
Q ss_pred EEEcC
Q 004410 591 IWNYS 595 (755)
Q Consensus 591 iWd~~ 595 (755)
+-++.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 66654
No 374
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.49 Score=51.88 Aligned_cols=197 Identities=18% Similarity=0.217 Sum_probs=127.2
Q ss_pred EEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEecC-CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec
Q 004410 391 VLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 391 V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~h~-~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~ 467 (755)
...+.+.+++ .+ ++-.....+..-+...........-. ..-..+++++...+.++....++.|.+.|..+..+....
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~ 112 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI 112 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe
Confidence 3446666766 22 22222224555554422222212222 455678888833446666666799999998888877665
Q ss_pred cCCcceEEEEEccCCCeEEEEeC---CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE-EEECCC
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI-VTSADS 543 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~---dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~-s~s~Dg 543 (755)
........++++|+++.+.++.. ++++.+.|..++++...... + ..+ ..+++.| ++..++ +-..++
T Consensus 113 ~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v---G-----~~P-~~~a~~p-~g~~vyv~~~~~~ 182 (381)
T COG3391 113 PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV---G-----NTP-TGVAVDP-DGNKVYVTNSDDN 182 (381)
T ss_pred eeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec---C-----CCc-ceEEECC-CCCeEEEEecCCC
Confidence 55557889999999988888766 68899999999888765221 1 122 8899999 666444 445889
Q ss_pred cEEEEECCcceeeEEEe---eeccCCceEEEEEecCCCEEEEEeCC---CcEEEEEcCCCC
Q 004410 544 LVRVLCGENVVGKFKAS---AFRVAGSQMFATFTSDGKHVVSPSED---SNIYIWNYSNQD 598 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~---~~~~~~~v~~l~fspdg~~L~sgs~D---g~I~iWd~~~~~ 598 (755)
.|.+.|........ .. ..........+.++++|.++...... +.+.+.|..++.
T Consensus 183 ~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 183 TVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred eEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 99999966543332 11 12223344678899999977766544 588888888765
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.42 E-value=0.16 Score=58.69 Aligned_cols=187 Identities=12% Similarity=0.087 Sum_probs=100.2
Q ss_pred CCCCEEEEEEcCCC-eEEEEe------CCC--cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC-------
Q 004410 387 HSSEVLDLSWSKNG-FLLSSS------ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID------- 450 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s------~Dg--~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D------- 450 (755)
....+...+.+|+| .++... .|. .|.+++... .. ..+......+.-.|+| ++..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEe
Confidence 33467889999999 554443 243 455556532 22 3332333488899999 87766665432
Q ss_pred -----CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEE---EECCCCeEeeeeeEEecccccCCCCC
Q 004410 451 -----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF---YDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 451 -----g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~i---wD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
+.+.+.++..+.... .....|..+.|+|||+.|+... +|.|++ -....+.........+. ......
T Consensus 425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~---~~l~~~ 498 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG---PGLGDT 498 (591)
T ss_pred ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee---cccCCc
Confidence 233333444433322 3456799999999999998866 577777 45445542211111111 112233
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEEC--CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCG--ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~--~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
+..+.|.+ ++.+ +++..++...+|.. ....... .........+..++-+++ .|+.+..+|
T Consensus 499 ~~~l~W~~-~~~L-~V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 499 AVSLDWRT-GDSL-VVGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cccceEec-CCEE-EEEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 57889998 5554 45555555555542 2111111 011112455666665552 455555555
No 376
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.40 E-value=0.85 Score=48.92 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=87.2
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEee-CCCCEEEEEe----------------------
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP-VDDNYFISGS---------------------- 448 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp-~d~~~l~sgs---------------------- 448 (755)
..+++++ .++-....+.|+-.|+.+.+...++. ....+-...|.. .++..++-.-
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~ 165 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR 165 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence 3445555 55555556778888888887766665 455554556643 2444443321
Q ss_pred CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCc-----EEEEECC--CCeEeeeeeEEecccccCCCC
Q 004410 449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN-----CRFYDIK--DNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~-----I~iwD~~--~~~~~~~~~~~~~~~~~~~~~ 521 (755)
....|...|+.+++...+......+..+.|+|....+++=+..|- -+||-++ ...... +. ......
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~-----v~--~~~~~e 238 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK-----VH--RRMEGE 238 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EE-----SS-----TTE
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCccee-----ee--cCCCCc
Confidence 123466678888888777777788899999996555555444332 3566444 333221 11 112233
Q ss_pred CeEEEEEcCCCCCEEEE-EE-C---CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 522 RITGFQFSPSDPSKVIV-TS-A---DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s-~s-~---Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
.+..=-|.| ++..|.- +. . +..|.-+|..+....... .. .....+-.++||++++-=+.|
T Consensus 239 ~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~---~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 239 SVGHEFWVP-DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM---EM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEEE-T-TSS-EEEEEEETTT--EEEEEE-TTT--EEEEE---EE--SEEEEEE-TTSSEEEEEE--
T ss_pred ccccccccC-CCCEEEEEeecCCCCceEEEeeCCCCCCceEEE---eC-CceeeeEEcCCCCEEEecCCC
Confidence 455556788 5554433 32 2 224555666655443222 11 133455667899988765555
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.36 E-value=0.43 Score=55.05 Aligned_cols=195 Identities=14% Similarity=0.133 Sum_probs=109.4
Q ss_pred EEEEcCCCeEEEEeCC------CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCc-----EEEEEcCCC
Q 004410 393 DLSWSKNGFLLSSSAD------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK-----VRIWEVRRC 461 (755)
Q Consensus 393 ~l~~s~~~~L~s~s~D------g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~-----V~iwdl~~~ 461 (755)
+++...+...++|+.| .++..||..+++....-.-...-..+.....++.+.++|+.||. |-.||..+.
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC
Confidence 4555554477788887 46888998888765533211111222222237888999999974 677887766
Q ss_pred eEEEeccCCcceEEEEEc-cCCCeEEEEeCCC------cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 462 QVVDYTDIREIVSAVCYC-PDGKGGIVGTMTG------NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~s-pdg~~la~gs~dg------~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
+-................ -+|+..++|+.++ .+..||..++.-...... .... ... +++.. ++.
T Consensus 407 ~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M--~~~R----~~~-g~a~~--~~~ 477 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM--NTRR----SGF-GVAVL--NGK 477 (571)
T ss_pred cccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc--cccc----ccc-eEEEE--CCE
Confidence 544333222233333222 2778888888654 478899988765432221 1111 111 13332 668
Q ss_pred EEEEEECCCc-----EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc-----EEEEEcCCCC
Q 004410 535 KVIVTSADSL-----VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN-----IYIWNYSNQD 598 (755)
Q Consensus 535 ~l~s~s~Dg~-----I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~-----I~iWd~~~~~ 598 (755)
++++|+.|+. |..||..+...............+. + ..-+++..+.|+.||. |-.||..+.+
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g-~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG-V-VVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc-E-EEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 8888887763 6667776654444332121222221 1 2236778888888764 6667665554
No 378
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.32 E-value=2.4 Score=47.03 Aligned_cols=245 Identities=11% Similarity=0.049 Sum_probs=114.2
Q ss_pred eeecCCCCeeEEe-----eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC---------
Q 004410 241 ATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--------- 306 (755)
Q Consensus 241 ~~~spdg~~lasg-----s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg--------- 306 (755)
..++|+|+++|.+ +....++|+|+.++..... .+..-. -..+.|.+|++.|+....+.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d------~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD------GIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE------EEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC------cccccc--cceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 6789999988865 2234599999887632111 111111 12399999988776664333
Q ss_pred --cEEEEEccCCeee--eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 307 --TVRVWKVIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 307 --~I~vWdv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
.|+.|.+.+...- ..+.........+..........+.+....... ...+.+.+............
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~----------~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS----------ESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS----------EEEEEEEECCCTTTSS-SEE
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc----------CCeEEEEeccccCCCcCCcE
Confidence 3777777665432 112222221112222222222222221111111 12222222221100011222
Q ss_pred EecCCCCCE-EEEEEcCCC-eEEEEe---CCCcEEEEeCCCCe---EE-EEEecCCc--EEEEEEeeCCCCEEEEEeCCC
Q 004410 383 EFQGHSSEV-LDLSWSKNG-FLLSSS---ADKTVRLWQVGIDR---CL-RVFSHNNY--VTSVAFNPVDDNYFISGSIDG 451 (755)
Q Consensus 383 ~~~gh~~~V-~~l~~s~~~-~L~s~s---~Dg~V~iWdl~s~~---~~-~~~~h~~~--V~~i~fsp~d~~~l~sgs~Dg 451 (755)
.+..+...+ ..+... .+ +++... ..+.|...++.... .. ..+.+... +..+... .+.+++....++
T Consensus 271 ~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENG 347 (414)
T ss_dssp EEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETT
T ss_pred EEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECC
Confidence 333333333 333333 44 333222 23566667777654 22 34456553 4444432 344555555555
Q ss_pred --cEEEEEcC-CCeEEEecc-CCcceEEEEEccCCCeEEEEeC----CCcEEEEECCCCeEee
Q 004410 452 --KVRIWEVR-RCQVVDYTD-IREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 452 --~V~iwdl~-~~~~~~~~~-~~~~V~~v~~spdg~~la~gs~----dg~I~iwD~~~~~~~~ 506 (755)
.|+++++. +........ ..+.|..+...+++..+..... -++++.||+.+++...
T Consensus 348 ~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred ccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 48899999 554443332 3344666666666665544322 3568889999887653
No 379
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.32 E-value=0.0079 Score=40.21 Aligned_cols=36 Identities=36% Similarity=0.771 Sum_probs=31.6
Q ss_pred cceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEe
Q 004410 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ 415 (755)
Q Consensus 380 ~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd 415 (755)
++..+..|...|.++.|++.+ .+++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667899999999999987 999999999999996
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.25 E-value=1.6 Score=44.38 Aligned_cols=189 Identities=13% Similarity=0.133 Sum_probs=113.4
Q ss_pred cEEEEEEecCCCEEEEEcCCC--cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 286 SILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
-...+.|..+|.++-+.|.-| .|+.+|+.+++.......+...
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~----------------------------------- 90 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY----------------------------------- 90 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------------------------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-----------------------------------
Confidence 455788878899889988777 7999999998866544332110
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCE
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~ 443 (755)
|. . -+.-+.+.+..|.| .++...+||..+-+.+..+.....=..++ . ++..
T Consensus 91 ----------Fg---E---Git~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~-dg~~ 141 (264)
T PF05096_consen 91 ----------FG---E---GITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLT--S-DGKR 141 (264)
T ss_dssp -----------E---E---EEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEE--E-CSSC
T ss_pred ----------cc---e---eEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEE--c-CCCE
Confidence 00 0 00111233444444 56888999999999999998766667777 3 6667
Q ss_pred EEEEeCCCcEEEEEcCCCeEEE---eccCCc---ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEec-cc-
Q 004410 444 FISGSIDGKVRIWEVRRCQVVD---YTDIRE---IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ-GK- 515 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~~~---~~~~~~---~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~-~~- 515 (755)
|+.......|+++|..+.+.+. ...... .++-+.|- +|...|=.=....|...|..+|+........-. ..
T Consensus 142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~ 220 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEV 220 (264)
T ss_dssp EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHH
T ss_pred EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcc
Confidence 7777667889999988765442 222222 34455664 666666666677888899999988765432110 00
Q ss_pred -----ccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 516 -----KKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 516 -----~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
......-.+++++.|..+.++++|
T Consensus 221 ~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 221 GRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 111234589999999555555555
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.15 E-value=2.4 Score=46.07 Aligned_cols=132 Identities=20% Similarity=0.296 Sum_probs=65.1
Q ss_pred CCCcEEEEeCCCCeEEEEEecC---CcEEEEEEeeC-CCC-EEEEEeCCCcEEEEEc-CCC-----eEEEecc-------
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPV-DDN-YFISGSIDGKVRIWEV-RRC-----QVVDYTD------- 468 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~---~~V~~i~fsp~-d~~-~l~sgs~Dg~V~iwdl-~~~-----~~~~~~~------- 468 (755)
.-.++.+||+.+.+.++++... ..+..|.|... +.. -|+.+....+|..|-- ..+ ++++...
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 4478999999999999999643 34667777541 222 3555555666665544 333 2222211
Q ss_pred ---C-------CcceEEEEEccCCCeEEEEe-CCCcEEEEECCCC-eEeeeeeEEeccccc------CCC----CCeEEE
Q 004410 469 ---I-------REIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDN-QLYQQNQICLQGKKK------LPG----KRITGF 526 (755)
Q Consensus 469 ---~-------~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~-~~~~~~~~~~~~~~~------~~~----~~I~~v 526 (755)
. ..-|+.|.+|.|.++|.+.+ ..|.|+.||+.+. +.....++.+.+... ..+ +...-+
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 1 34589999999999998866 4899999999863 333333443333221 111 123556
Q ss_pred EEcCCCCCEEEEE
Q 004410 527 QFSPSDPSKVIVT 539 (755)
Q Consensus 527 ~fsp~d~~~l~s~ 539 (755)
+.|- |++.|.++
T Consensus 380 qlS~-DGkRlYvT 391 (461)
T PF05694_consen 380 QLSL-DGKRLYVT 391 (461)
T ss_dssp EE-T-TSSEEEEE
T ss_pred EEcc-CCeEEEEE
Confidence 6776 55555544
No 382
>PHA02713 hypothetical protein; Provisional
Probab=96.07 E-value=0.22 Score=57.49 Aligned_cols=185 Identities=12% Similarity=0.043 Sum_probs=97.9
Q ss_pred eEEEEeCC------CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEEcCCCeEEEec
Q 004410 401 FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVDYT 467 (755)
Q Consensus 401 ~L~s~s~D------g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~~~~~~~ 467 (755)
.++.|+.+ ..+..||..++.....-. ....-.+++.. ++.+.+.|+.++ .+..||..+.+-....
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 55566643 347788988776533221 11111122222 678888888764 4788998876544333
Q ss_pred cCCcceEEE-EEccCCCeEEEEeCCC-----------------------cEEEEECCCCeEeeeeeEEecccccCCCCCe
Q 004410 468 DIREIVSAV-CYCPDGKGGIVGTMTG-----------------------NCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523 (755)
Q Consensus 468 ~~~~~V~~v-~~spdg~~la~gs~dg-----------------------~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I 523 (755)
......... +..-+|+..++|+.++ .+..||..+++-..... .......
T Consensus 384 ~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~------m~~~r~~- 456 (557)
T PHA02713 384 DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN------FWTGTIR- 456 (557)
T ss_pred CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC------CCccccc-
Confidence 222221111 1123677778887653 47788888765432111 0001111
Q ss_pred EEEEEcCCCCCEEEEEECC------CcEEEEECCc-ceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC--cEEEEEc
Q 004410 524 TGFQFSPSDPSKVIVTSAD------SLVRVLCGEN-VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS--NIYIWNY 594 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~D------g~I~iwd~~~-~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg--~I~iWd~ 594 (755)
.+++.. ++.+.++|+.+ ..+..||..+ ..................++ -+|+..++|+.|| .+-.||.
T Consensus 457 ~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 457 PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCc
Confidence 112222 55677777654 2356788775 33333222121222222222 3788899999888 6778887
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.+.+
T Consensus 533 ~~~~ 536 (557)
T PHA02713 533 YTYE 536 (557)
T ss_pred cccc
Confidence 7766
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=1.1 Score=45.66 Aligned_cols=168 Identities=10% Similarity=0.149 Sum_probs=112.1
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
.|-...|.++.|+|+. .|++......-.||=-..|+.++++. .-.....|.+.. ++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 3445559999999998 77777777777777777899988885 233345566765 6777777777888888877654
Q ss_pred e-EE-------E--eccC-CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe--cccccCCCCCeEEEEE
Q 004410 462 Q-VV-------D--YTDI-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL--QGKKKLPGKRITGFQF 528 (755)
Q Consensus 462 ~-~~-------~--~~~~-~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~--~~~~~~~~~~I~~v~f 528 (755)
. ++ . ...+ ......++|.|....|+++-...-+.||.+............. .......-..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2 11 1 1122 4567889999999999999888888888776433111111100 0001112346788999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCcc
Q 004410 529 SPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 529 sp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
++..+.+++.+..++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 9877778888888888777776543
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.86 E-value=0.015 Score=56.71 Aligned_cols=141 Identities=17% Similarity=0.022 Sum_probs=72.5
Q ss_pred EEEEEeCCCcEEEEEcCCCeEE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 443 YFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 443 ~l~sgs~Dg~V~iwdl~~~~~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
.+...+.||.|+-++++..+.. ....+... .....-+..+++|+.+|.|++|.......... ......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d-------~~~s~~ 101 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD-------RVCSGE 101 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHH-------hhhccc
Confidence 3445567888888887764432 11111111 11222456899999999999998872211110 000111
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC-CceEEEEEecCCCEEEEE--eCCCcEEEEEcC
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA-GSQMFATFTSDGKHVVSP--SEDSNIYIWNYS 595 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~-~~v~~l~fspdg~~L~sg--s~Dg~I~iWd~~ 595 (755)
..|-++.-.-.++.+.++++.||.|+.|+.......-.. ..|. .++..+..+..+++|+.+ |.|..++.|++.
T Consensus 102 e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~--g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 102 ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV--GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccceeccccccccceeEEeccCCceeeeccccCceeeee--ccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 223222222235568999999999999987653322222 2233 233333333344444444 444444444443
No 385
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=1.7 Score=44.43 Aligned_cols=162 Identities=14% Similarity=0.171 Sum_probs=103.0
Q ss_pred eecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
+.+-...|.++.|+|+.+.|++......-.||=..+|+.+..+....
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g--------------------------------- 127 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG--------------------------------- 127 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc---------------------------------
Confidence 45556669999999999999999988888888777787776654321
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEE----------EEec-
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR----------VFSH- 427 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~----------~~~h- 427 (755)
-...-.+.|..+| +.++--.++.+.++.+..+.... ...+
T Consensus 128 ----------------------------~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~ 179 (316)
T COG3204 128 ----------------------------FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKK 179 (316)
T ss_pred ----------------------------cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCC
Confidence 1112235565555 44444456666666554332111 1113
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe-EE---EeccC-------CcceEEEEEcc-CCCeEEEEeCCCcEE
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VV---DYTDI-------REIVSAVCYCP-DGKGGIVGTMTGNCR 495 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-~~---~~~~~-------~~~V~~v~~sp-dg~~la~gs~dg~I~ 495 (755)
+.....++|.| .+..|+.+-.-.-+.||.+.... .. ....+ -..|.++.|++ .+.+++.+..++.+.
T Consensus 180 N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~ 258 (316)
T COG3204 180 NKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLL 258 (316)
T ss_pred CcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEE
Confidence 66788999999 66667777777777777765432 11 11111 23467788987 456666677777788
Q ss_pred EEECCCCe
Q 004410 496 FYDIKDNQ 503 (755)
Q Consensus 496 iwD~~~~~ 503 (755)
-.|....-
T Consensus 259 Evd~~G~~ 266 (316)
T COG3204 259 EVDLSGEV 266 (316)
T ss_pred EEecCCCe
Confidence 88877653
No 386
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.73 E-value=2.3 Score=50.67 Aligned_cols=201 Identities=11% Similarity=0.097 Sum_probs=116.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcE---------EEEEEee---------------CCCCEEEEEeCCCcEE
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV---------TSVAFNP---------------VDDNYFISGSIDGKVR 454 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V---------~~i~fsp---------------~d~~~l~sgs~Dg~V~ 454 (755)
++.|..++.++.|.-.|..+++.+-.+.....+ ..+.+.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777788888999999999888777532221 1122221 1345788899999999
Q ss_pred EEEcCCCeEEEeccCCcce-------------EEEEEcc--CCCeEEEEeC----------CCcEEEEECCCCeEeeeee
Q 004410 455 IWEVRRCQVVDYTDIREIV-------------SAVCYCP--DGKGGIVGTM----------TGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 455 iwdl~~~~~~~~~~~~~~V-------------~~v~~sp--dg~~la~gs~----------dg~I~iwD~~~~~~~~~~~ 509 (755)
-.|.++++.+........| ..+.-.| .+..+++|+. +|.|+-||.++++++..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 9999999887433332222 1112222 2346666643 6889999999999987654
Q ss_pred EEecccc--------cC-CCCCe-EEEEEcCCCCCEEEEEE------------------CCCcEEEEECCcceeeEEEee
Q 004410 510 ICLQGKK--------KL-PGKRI-TGFQFSPSDPSKVIVTS------------------ADSLVRVLCGENVVGKFKASA 561 (755)
Q Consensus 510 ~~~~~~~--------~~-~~~~I-~~v~fsp~d~~~l~s~s------------------~Dg~I~iwd~~~~~~~~~~~~ 561 (755)
....... -. ....+ ..+++.| ...+++... ..+.|.-.|..+.+.+.....
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 3110000 00 00111 2344444 333333322 124455566766666665543
Q ss_pred eccCC-------ceEEEEEec-CCC---EEEEEeCCCcEEEEEcCCCCcc
Q 004410 562 FRVAG-------SQMFATFTS-DGK---HVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 562 ~~~~~-------~v~~l~fsp-dg~---~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
..|.- ...-+.+.. +|+ .|+.++.+|.+++.|-.+++.+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 33321 111222333 664 7999999999999999999844
No 387
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.73 E-value=3.7 Score=44.08 Aligned_cols=71 Identities=17% Similarity=0.073 Sum_probs=41.6
Q ss_pred CCCeEEEEEcCC------CCCEEEEEECCCcEEEEECCcceeeE--EEeeeccCCceEEEEEecCCCEEEEEeCCCcEE
Q 004410 520 GKRITGFQFSPS------DPSKVIVTSADSLVRVLCGENVVGKF--KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590 (755)
Q Consensus 520 ~~~I~~v~fsp~------d~~~l~s~s~Dg~I~iwd~~~~~~~~--~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~ 590 (755)
...++.+.|... .+.++++.-..+.|............ ..........+..+++.|||.++++...+|.|+
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 356777777642 23455555556677777765332221 111123344799999999999999988899886
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.35 Score=52.80 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=93.8
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC-------EEEEEeCCCcEEEEEcCCCe--EEEe-----
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-------YFISGSIDGKVRIWEVRRCQ--VVDY----- 466 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~-------~l~sgs~Dg~V~iwdl~~~~--~~~~----- 466 (755)
.|.++.....|+-.|++.|+.+..+.....|+-+.+.| +.. .-+.|-.|..|.-||.+-.. .+.+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 55667777889999999999999998666688888888 432 23456678899999987422 1211
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
........|++-..+| +|++|+.+|.|++||--..... ...+.-+..|+.+..+. ++.+|+.++. ..+.
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AK--------TAlPgLG~~I~hVdvta-dGKwil~Tc~-tyLl 495 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAK--------TALPGLGDAIKHVDVTA-DGKWILATCK-TYLL 495 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhh--------hcccccCCceeeEEeec-cCcEEEEecc-cEEE
Confidence 1223345666666665 8899999999999997322211 11334567899999998 8888776654 4444
Q ss_pred EEE
Q 004410 547 VLC 549 (755)
Q Consensus 547 iwd 549 (755)
+.+
T Consensus 496 Li~ 498 (644)
T KOG2395|consen 496 LID 498 (644)
T ss_pred EEE
Confidence 444
No 389
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.56 E-value=2 Score=49.31 Aligned_cols=198 Identities=15% Similarity=0.155 Sum_probs=118.4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEecCC--cEEE----------EEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNN--YVTS----------VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~--~V~~----------i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
++.|+.++.++.|+-.|..+++.+-.+.... .+.. +++ .+..++.++.|+.|.-.|..+++++-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4577777888899999999999887765321 1111 122 235677788999999999999998733
Q ss_pred ccCCcc--eEEEEEcc--CCCeEEEEeC------CCcEEEEECCCCeEeeeeeEEecccc--------------------
Q 004410 467 TDIREI--VSAVCYCP--DGKGGIVGTM------TGNCRFYDIKDNQLYQQNQICLQGKK-------------------- 516 (755)
Q Consensus 467 ~~~~~~--V~~v~~sp--dg~~la~gs~------dg~I~iwD~~~~~~~~~~~~~~~~~~-------------------- 516 (755)
...... -..+.-+| .+..++++.. +|.|.-+|..+++.+...........
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 221110 01111122 1235555543 68999999999998765443211100
Q ss_pred ---cCCCCCeE-EEEEcCCCCCEEEEEECC-----C-----------cEEEEECCcceeeEEEeeeccCC-------ceE
Q 004410 517 ---KLPGKRIT-GFQFSPSDPSKVIVTSAD-----S-----------LVRVLCGENVVGKFKASAFRVAG-------SQM 569 (755)
Q Consensus 517 ---~~~~~~I~-~v~fsp~d~~~l~s~s~D-----g-----------~I~iwd~~~~~~~~~~~~~~~~~-------~v~ 569 (755)
...+..+. .+.+.| ...+|+.+... + .|.-.|..+.+.+.......|.. ...
T Consensus 226 ~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 00111222 346666 44555555422 2 45566777776666655444432 112
Q ss_pred EEEEecCCC---EEEEEeCCCcEEEEEcCCCCcc
Q 004410 570 FATFTSDGK---HVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 570 ~l~fspdg~---~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
-+.+..+|+ .|+.+..+|.+++.|-.+++.+
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 233335776 7889999999999999999854
No 390
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.38 E-value=4.8 Score=44.23 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=34.5
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
+.+....+.+|+.+|++++.|+...-|.|.++|+..+..+..
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrm 344 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRM 344 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhh
Confidence 344455689999999999999988889999999998876653
No 391
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.26 E-value=2.4 Score=41.82 Aligned_cols=143 Identities=13% Similarity=0.200 Sum_probs=88.0
Q ss_pred CCCEEEEEEcCCCeEEEEeCC----------CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC-EEEEEeCCCcEEEE
Q 004410 388 SSEVLDLSWSKNGFLLSSSAD----------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIW 456 (755)
Q Consensus 388 ~~~V~~l~~s~~~~L~s~s~D----------g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~-~l~sgs~Dg~V~iw 456 (755)
.....+-..+|+|.+..|.+. |.++.|-+. ++....+..-.--+.++|+. +.+ +.++-+.+-.|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccc-cCcEEEEEccCceEEeee
Confidence 345566677888844555432 445555432 22222333333446788886 544 45566777888778
Q ss_pred E--cCCCeEE------Eecc----CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 457 E--VRRCQVV------DYTD----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 457 d--l~~~~~~------~~~~----~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
| ..++.+. .+.. ..-..-.++...+|++.++.-..|+|..+|..+++.++++.+ +..+|+
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl--------Pt~qit 257 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL--------PTPQIT 257 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc--------CCCceE
Confidence 7 5555432 2222 111233455667888888888899999999999999887654 356899
Q ss_pred EEEEcCCCCCEEEEEE
Q 004410 525 GFQFSPSDPSKVIVTS 540 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s 540 (755)
+++|--.+-..+++..
T Consensus 258 sccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEecCCCccEEEEEe
Confidence 9999653334444443
No 392
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.26 E-value=0.42 Score=55.24 Aligned_cols=161 Identities=11% Similarity=0.050 Sum_probs=87.3
Q ss_pred CcEEEEEEeeCCCCEEEEEe------CCC--cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCc-EEEEEC
Q 004410 429 NYVTSVAFNPVDDNYFISGS------IDG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN-CRFYDI 499 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs------~Dg--~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~-I~iwD~ 499 (755)
..+...+++| +++.++... .|. .|.+++.... ...+... ...+.-.|+|||..|++...... +++.+-
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999 888776654 243 4666665332 2333222 23788999999998888764322 333332
Q ss_pred CCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE---EECCcceeeE---EEeeeccCCceEEEEE
Q 004410 500 KDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV---LCGENVVGKF---KASAFRVAGSQMFATF 573 (755)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i---wd~~~~~~~~---~~~~~~~~~~v~~l~f 573 (755)
.....+....+.-..........|..+.|+| |+..|+... ++.|.| -........+ ..........+.++.|
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 2111111001000000002245799999999 777777655 467776 3322222122 1111223334688999
Q ss_pred ecCCCEEEEEeCCCcEEEEEcC
Q 004410 574 TSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 574 spdg~~L~sgs~Dg~I~iWd~~ 595 (755)
..++.++ .+..++...+|.+.
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEe
Confidence 9998855 55555555555544
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.99 E-value=2 Score=44.12 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=87.8
Q ss_pred CEEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE-cCCCe--EE
Q 004410 390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRCQ--VV 464 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd-l~~~~--~~ 464 (755)
.+...++++++ .++... .++.-.||-...+...........++.-.|.+ ++...+....+...+++. ...+. .+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 68889999999 555444 23333344333333333332444788889999 777777777677777774 33332 22
Q ss_pred --EeccCCcceEEEEEccCCCeEEEEe---CCCcEEEEECC---CC-eEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 465 --DYTDIREIVSAVCYCPDGKGGIVGT---MTGNCRFYDIK---DN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 465 --~~~~~~~~V~~v~~spdg~~la~gs---~dg~I~iwD~~---~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
.+......|+++.++|||..++... .++.|.+--+. .+ ........ .........++.+.|.+ +..+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~---~~~~~~~~~v~~v~W~~-~~~L 179 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR---RVAPPLLSDVTDVAWSD-DSTL 179 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccce---EecccccCcceeeeecC-CCEE
Confidence 2333333899999999999998866 34667766543 22 11110000 11112356899999998 6666
Q ss_pred EEEEECCC
Q 004410 536 VIVTSADS 543 (755)
Q Consensus 536 l~s~s~Dg 543 (755)
++.+...+
T Consensus 180 ~V~~~~~~ 187 (253)
T PF10647_consen 180 VVLGRSAG 187 (253)
T ss_pred EEEeCCCC
Confidence 66555433
No 394
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.95 E-value=0.62 Score=47.16 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=42.3
Q ss_pred eeecCCCCeeEEeeC-----CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 241 ~~~spdg~~lasgs~-----dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
-.|||||.+|...-. -|.|-|||...... ..-++..|.-.-..|.|.+||+.|+.+.
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq------rvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ------RVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccc------eecccccCCcCcceeEEecCCcEEEEeC
Confidence 579999999987543 37799999764322 2335566766677899999999998874
No 395
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.94 E-value=5.9 Score=46.86 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=28.0
Q ss_pred CCCCCEEEEEEcCCC----eEEEEeCCCcEEEEeCCC
Q 004410 386 GHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGI 418 (755)
Q Consensus 386 gh~~~V~~l~~s~~~----~L~s~s~Dg~V~iWdl~s 418 (755)
.+...|..+.|+|.+ +|+.-..|+++|+||+..
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 445689999999963 899999999999999964
No 396
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.92 E-value=11 Score=44.78 Aligned_cols=176 Identities=14% Similarity=0.187 Sum_probs=108.9
Q ss_pred cEEEEeCCCCeEEEEEe--cCC---cEEEEEEeeCCCCEEEEEeC----------CCcEEEEEcCCC-e--EEEeccCCc
Q 004410 410 TVRLWQVGIDRCLRVFS--HNN---YVTSVAFNPVDDNYFISGSI----------DGKVRIWEVRRC-Q--VVDYTDIRE 471 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~--h~~---~V~~i~fsp~d~~~l~sgs~----------Dg~V~iwdl~~~-~--~~~~~~~~~ 471 (755)
.++++|-.+.+.+.... ... .|.+..|..+.+.++++|.. .|.|.|+..... + .+.....++
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 37777877776665543 222 34445587633677887752 477888877662 2 222333344
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
.+.++..- +|+++| +-...|++|+..+.+.+.. ...+...+..+...- .+..+++|.--+.+.+....
T Consensus 831 av~aL~~f-ngkllA--~In~~vrLye~t~~~eLr~--------e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 831 AVYALVEF-NGKLLA--GINQSVRLYEWTTERELRI--------ECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred ceeehhhh-CCeEEE--ecCcEEEEEEccccceehh--------hhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEe
Confidence 55554431 555544 4567899999988854431 223445677777776 78899999988888876655
Q ss_pred cceeeEEEee-eccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 552 NVVGKFKASA-FRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 552 ~~~~~~~~~~-~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.....+.... .-+...++++.+-. +..++.+-.+|.+++-..++.-
T Consensus 899 ~~eg~f~evArD~~p~Wmtaveil~-~d~ylgae~~gNlf~v~~d~~~ 945 (1096)
T KOG1897|consen 899 GDEGNFEEVARDYNPNWMTAVEILD-DDTYLGAENSGNLFTVRKDSDA 945 (1096)
T ss_pred ccCCceEEeehhhCccceeeEEEec-CceEEeecccccEEEEEecCCC
Confidence 4443333211 23566777777764 4556667788999988877544
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.87 E-value=0.72 Score=51.28 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=88.5
Q ss_pred CCcEEEEEEeeCCCCEEEEEe---CCCcEEEEEcCCCeEEEeccCCcceEEEEEccC----CCeEEEEeCCCcEEEEECC
Q 004410 428 NNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD----GKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs---~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spd----g~~la~gs~dg~I~iwD~~ 500 (755)
-.+|..++|. ||+.++-.. .+|.+++=| .. ..+.-+.|..++|.|- -..+++.-....|.||.+.
T Consensus 19 iHPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd---s~---viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD---SK---VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec--CCCEEEEEeeeeeCCccccCC---cc---EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3567888886 455544322 122222211 11 2334466899999994 3356666778899999886
Q ss_pred C-----CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 501 D-----NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 501 ~-----~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
- ++++.. +.+-.+ ..-.---.++.|+| ....|++-.....-.+++.+......+.. ....+.|.+.||.+
T Consensus 91 ~s~~e~~K~l~s-QtcEi~--e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaD-i~~~G~IhCACWT~ 165 (671)
T PF15390_consen 91 PSTTERNKLLMS-QTCEIR--EPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKAD-IKTSGLIHCACWTK 165 (671)
T ss_pred cCccccccceee-eeeecc--CCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEe-ccCCceEEEEEecC
Confidence 2 222211 111100 00011224678999 66666666655554555554433333333 35678999999999
Q ss_pred CCCEEEEEeC-CCcEEEEEcC
Q 004410 576 DGKHVVSPSE-DSNIYIWNYS 595 (755)
Q Consensus 576 dg~~L~sgs~-Dg~I~iWd~~ 595 (755)
||+.|+.+-. .=.-||||-.
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCc
Confidence 9998876643 3357888854
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=0.18 Score=59.64 Aligned_cols=124 Identities=14% Similarity=0.135 Sum_probs=84.3
Q ss_pred ceEEEEEccCCCeEEEEeCCC--cEEEEECCCCeEeeee-eEEecccc--cCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 472 IVSAVCYCPDGKGGIVGTMTG--NCRFYDIKDNQLYQQN-QICLQGKK--KLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg--~I~iwD~~~~~~~~~~-~~~~~~~~--~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
.|..+...+|+...++..... .|..||++.-..-... ...+..+. ........++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455666667777666544333 6899999854332210 01111111 122344677899997777888999999999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
|..+......... ......+++++|+|.|+.++.|-..|++.-|...-.
T Consensus 182 V~~~~~~~~~v~s--~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTS--FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhhhhhhhhhhcc--cCcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 9877654444333 455678899999999999999999999999987654
No 399
>PHA03098 kelch-like protein; Provisional
Probab=94.79 E-value=1.4 Score=50.73 Aligned_cols=185 Identities=8% Similarity=0.038 Sum_probs=90.9
Q ss_pred eEEEEeCC------CcEEEEeCCCCeEEEEEec--CCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEEcCCCeEEEec
Q 004410 401 FLLSSSAD------KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 401 ~L~s~s~D------g~V~iWdl~s~~~~~~~~h--~~~V~~i~fsp~d~~~l~sgs~D-----g~V~iwdl~~~~~~~~~ 467 (755)
.++.|+.+ ..+..||..+++....-.. ...-.+++. - ++.+++.|+.+ ..+..||..+.+-....
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-F-NNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-E-CCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 55555543 2577889887776433221 111112222 2 67788888876 34778888776544322
Q ss_pred cCCcce-EEEEEccCCCeEEEEeCC------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 468 DIREIV-SAVCYCPDGKGGIVGTMT------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 468 ~~~~~V-~~v~~spdg~~la~gs~d------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
....+. ...+..-+++..+.|+.+ ..+..||+.+++-..... ........ +++.. ++..++.|+
T Consensus 375 ~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~------~p~~r~~~-~~~~~--~~~iyv~GG 445 (534)
T PHA03098 375 PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP------LPISHYGG-CAIYH--DGKIYVIGG 445 (534)
T ss_pred CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC------CCccccCc-eEEEE--CCEEEEECC
Confidence 221111 111122366777777632 358899988765432111 01011111 12222 456666665
Q ss_pred CCC--------cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 541 ADS--------LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 541 ~Dg--------~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
.+. .+.+||..+............... ..++ .-+++.++.|+.+ +.|.+||..+.+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCccccc-ceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 432 377788765433222111101111 1122 2367777777754 467788877654
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.77 E-value=0.072 Score=38.81 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=29.0
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
..|.+++|+|...+||.+..+|.|.|+.+ +++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 46999999999999999999999999998 544
No 401
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.31 E-value=0.15 Score=37.19 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=29.7
Q ss_pred cCCcceEEEEEccCCCeEEEEeCCCcEEEEECC
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~ 500 (755)
.....|..++|+|...+||+|+.+|.|.+|.+.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 445679999999999999999999999999994
No 402
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.20 E-value=9.9 Score=41.42 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=56.2
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCCC-----eE---EEEEec-----CCcEEEEEEeeCCCCEEEEEeCC------
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGID-----RC---LRVFSH-----NNYVTSVAFNPVDDNYFISGSID------ 450 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~-----~~---~~~~~h-----~~~V~~i~fsp~d~~~l~sgs~D------ 450 (755)
....|++.+++ |+.+.....+++.|.... +. +..+.. ......++|.| ++.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 45678888888 444444443334454321 21 112221 34577899999 88877654421
Q ss_pred -------------CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEe
Q 004410 451 -------------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT 489 (755)
Q Consensus 451 -------------g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs 489 (755)
|.|.-++..+++...+.........++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 445566666555443333333456899999998876643
No 403
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=0.25 Score=58.24 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=69.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeE--EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQV--VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~--~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
....++.|+..|.|...|+...-. .+-.....+|++++|+.+|+.++.|-.+|.|.+||+..++..+.+... .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-----~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-----G 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-----C
Confidence 456788899899999988877422 233345678999999999999999999999999999998877653321 1
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
.+...+..+.+.. ++..++++...|.
T Consensus 173 ap~t~vi~v~~t~-~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 173 APVTGVIFVGRTS-QNSKLLTSDTGGS 198 (1206)
T ss_pred CccceEEEEEEeC-CCcEEEEccCCCc
Confidence 1122233333333 4446666666665
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.05 E-value=1.4 Score=50.83 Aligned_cols=185 Identities=16% Similarity=0.150 Sum_probs=107.2
Q ss_pred eEEEEeCC------CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC-C-----cEEEEEcCCCeEEEe
Q 004410 401 FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-G-----KVRIWEVRRCQVVDY 466 (755)
Q Consensus 401 ~L~s~s~D------g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D-g-----~V~iwdl~~~~~~~~ 466 (755)
.++.|+.+ ..+..||..+++...... ....-.++++. ++.++++|+.| | .+..||..+.+-...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 55666665 468889988885554432 44445556655 46888999999 3 577888888774443
Q ss_pred ccCCcceEEEEEc-cCCCeEEEEeCCCc-----EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 467 TDIREIVSAVCYC-PDGKGGIVGTMTGN-----CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 467 ~~~~~~V~~v~~s-pdg~~la~gs~dg~-----I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
......-..+... -+|...|+|+.||. +-.||..+.+-..... . . ....+.....-++.+.++|+
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~------m--~-~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP------M--L-TRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC------C--C-cceeeeEEEEECCEEEEEcC
Confidence 3322222222222 27888899999875 7788888765432111 1 1 12233333333778888888
Q ss_pred CCC------cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc-----EEEEEcCCCC
Q 004410 541 ADS------LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN-----IYIWNYSNQD 598 (755)
Q Consensus 541 ~Dg------~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~-----I~iWd~~~~~ 598 (755)
.++ .+..||..+................. ++ .-++...+.||.|+. |..||..+.+
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 654 45667766654444332121111111 22 246788888887763 6667766554
No 405
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.74 E-value=3 Score=37.71 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=75.6
Q ss_pred eEEEEeCCCcEEEEeCC--------CCeEEEEEecCCcEEEEEEeeC----CCCEEEEEeCCCcEEEEEcCCCeEEEecc
Q 004410 401 FLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~--------s~~~~~~~~h~~~V~~i~fsp~----d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~ 468 (755)
.|++++.-++|.|.+.. ....+..+.-+..|++|+-.+- ..+.|+.|+ ...|..||+....-+.+..
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke 90 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKE 90 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhhh
Confidence 78888888999999865 3345677778888999976653 345666665 5679999999988888888
Q ss_pred CCcceEEEEEccC---CCeEEEEeCCCcEEEEECCCCeEee
Q 004410 469 IREIVSAVCYCPD---GKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 469 ~~~~V~~v~~spd---g~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
..+.|.++.+-.- ..-++..+.+-.|.-||....+...
T Consensus 91 ~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 91 VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 8888888887541 2234444446667777777666543
No 406
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=9.3 Score=39.19 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=104.5
Q ss_pred EEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE---EeccCCcceEEEEEccCCCeEEEEeCCCcEEEE
Q 004410 421 CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (755)
Q Consensus 421 ~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~---~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iw 497 (755)
.+..+...+.+..+.++ +++...+..+.-++|.|+.+.... ......+.-. .+.-.|+++.++..+.-+.++
T Consensus 79 l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay--gv~vsGn~aYVadlddgfLiv 153 (370)
T COG5276 79 LLSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY--GVYVSGNYAYVADLDDGFLIV 153 (370)
T ss_pred eEEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE--EEEecCCEEEEeeccCcEEEE
Confidence 34444566677778875 478888888889999999875433 2222223333 344478899999988888899
Q ss_pred ECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee-eEEEeeeccCCceEEEEEecC
Q 004410 498 DIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG-KFKASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 498 D~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~~v~~l~fspd 576 (755)
|+.+....+ +.+........-..++.+ +++..++..|+-+.|.|..+... .+... ......+.++..+++
T Consensus 154 dvsdpssP~-----lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~-~n~g~g~~sv~vsdn 224 (370)
T COG5276 154 DVSDPSSPQ-----LAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGS-YNTGPGTYSVSVSDN 224 (370)
T ss_pred ECCCCCCce-----eeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEE-EecCCceEEEEecCC
Confidence 998755432 333333344444566664 47777888999999999887543 33332 222336778888777
Q ss_pred CCEEEEEeCCCcEEEEEcCCCC
Q 004410 577 GKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 577 g~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
--|++... --+.+-|.++.+
T Consensus 225 r~y~vvy~--egvlivd~s~~s 244 (370)
T COG5276 225 RAYLVVYD--EGVLIVDVSGPS 244 (370)
T ss_pred eeEEEEcc--cceEEEecCCCC
Confidence 66666553 457777777655
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=0.29 Score=57.98 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=92.4
Q ss_pred CEEEEEEcCCC---eEEEEeCCCcEEEEeCCCCeE--------EEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRC--------LRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 390 ~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~~~--------~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
.|..+...+|+ .++..+.+-.|..||+++-.. ++.- .......++.|+|.-...++....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 34445555565 333444455788899864321 1111 14456788999996566678888899999
Q ss_pred EEEcCCCe-EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 455 IWEVRRCQ-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 455 iwdl~~~~-~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
+..+.... .+.........++++|+|.|+.+++|-..|++.-|-..-..... +.........+|.+|+|.. ..
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~-----ip~Pp~~e~yrvl~v~Wl~-t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE-----IPEPPVEENYRVLSVTWLS-TQ 255 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec-----ccCCCcCCCcceeEEEEec-ce
Confidence 88776433 23445667789999999999999999999999988765332111 1111112257899999986 33
Q ss_pred CEEEE
Q 004410 534 SKVIV 538 (755)
Q Consensus 534 ~~l~s 538 (755)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 44443
No 408
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.49 E-value=3 Score=42.85 Aligned_cols=149 Identities=18% Similarity=0.083 Sum_probs=86.6
Q ss_pred cEEEEEEeeCCCCEEEEEe---CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEE-CCCCeEe
Q 004410 430 YVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD-IKDNQLY 505 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs---~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD-~~~~~~~ 505 (755)
.+.+.++++ +++.++... ....|+++.......... ....++.-.|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 777766554 233455555443322222 334788889999988777777677767664 3333322
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE---CCCcEEEEECC---cc-eeeE---EEeeeccCCceEEEEEec
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS---ADSLVRVLCGE---NV-VGKF---KASAFRVAGSQMFATFTS 575 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s---~Dg~I~iwd~~---~~-~~~~---~~~~~~~~~~v~~l~fsp 575 (755)
. ..+... .....|+.+.++| |+..++... .++.|.|--+. .. ...+ ..........++.+.|.+
T Consensus 102 ~-~~v~~~----~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 102 P-VEVDWP----GLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred e-EEeccc----ccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 1 111111 0111899999999 776666554 34666665322 11 1111 111112346789999999
Q ss_pred CCCEEEEEeCCC
Q 004410 576 DGKHVVSPSEDS 587 (755)
Q Consensus 576 dg~~L~sgs~Dg 587 (755)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 998877765543
No 409
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.29 E-value=1.2 Score=49.58 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=75.3
Q ss_pred CCCCCEEEEEEcCCC-----eEEEEeCCCcEEEEeCC-----CCeEEEEE--e----cCCcEEEEEEeeCCCCEEEEEeC
Q 004410 386 GHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVG-----IDRCLRVF--S----HNNYVTSVAFNPVDDNYFISGSI 449 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-----~L~s~s~Dg~V~iWdl~-----s~~~~~~~--~----h~~~V~~i~fsp~d~~~l~sgs~ 449 (755)
|.-..|..+.|.|-+ .|++....+.|.||.+. +++.+... . ..---..+.|+| ....|++-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 344568999999853 68888889999999875 23332222 1 111235578999 7777776665
Q ss_pred CCcEEEEEcCC--CeEEEeccCCcceEEEEEccCCCeEEEEeCC-CcEEEEECC
Q 004410 450 DGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-GNCRFYDIK 500 (755)
Q Consensus 450 Dg~V~iwdl~~--~~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g~I~iwD~~ 500 (755)
...-.+++++. .++..-....+.|.|.||.+||+.|+++-.. =.-++||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 55545566653 3344334677889999999999998876543 235677653
No 410
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=0.6 Score=55.17 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=69.8
Q ss_pred eEEEEeCCCcEEEEeCCCCeE--EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-eccCCcc---eE
Q 004410 401 FLLSSSADKTVRLWQVGIDRC--LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI---VS 474 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~--~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~~~~~---V~ 474 (755)
.++.|+..|.|-..|+...-+ .......++|++++|+. ++..++.|-.+|.|.+||+..+++.+ +..+..+ |.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 677788888888888765422 22223678999999998 99999999999999999999987764 3333333 34
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECC
Q 004410 475 AVCYCPDGKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 475 ~v~~spdg~~la~gs~dg~I~iwD~~ 500 (755)
.+.+..++..++++...|. +|.+.
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEEE
Confidence 4445556667888877776 55543
No 411
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.01 E-value=14 Score=38.96 Aligned_cols=155 Identities=13% Similarity=0.189 Sum_probs=76.4
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEEC-CCCeE
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI-KDNQL 504 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~-~~~~~ 504 (755)
....+..+...+ ++.+++++..-..+.-||--...-. .-......|.++.|.|++.+.++ ...|.|++=+. .....
T Consensus 143 ~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCccc
Confidence 457788888888 8998888876666667876543222 33445678999999999776665 48888888772 22222
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee--eccCCceEEEEEecCCCEEEE
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA--FRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~--~~~~~~v~~l~fspdg~~L~s 582 (755)
..+ ... ........+..++|.+ +....++ +..|.+.+= .+.-...+... .......+.+.|..+. .-+.
T Consensus 221 w~~---~~~-~~~~~~~~~ld~a~~~-~~~~wa~-gg~G~l~~S--~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~ 291 (302)
T PF14870_consen 221 WSE---PII-PIKTNGYGILDLAYRP-PNEIWAV-GGSGTLLVS--TDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFV 291 (302)
T ss_dssp E------B--TTSS--S-EEEEEESS-SS-EEEE-ESTT-EEEE--SSTTSS-EE-GGGTTSSS---EEEEEETT-EEEE
T ss_pred ccc---ccC-CcccCceeeEEEEecC-CCCEEEE-eCCccEEEe--CCCCccceECccccCCCCceEEEEEcCCC-ceEE
Confidence 111 011 1122345589999998 5555554 444544331 11112222211 2345568888997664 4445
Q ss_pred EeCCCcEEEE
Q 004410 583 PSEDSNIYIW 592 (755)
Q Consensus 583 gs~Dg~I~iW 592 (755)
-+.+|.|.-|
T Consensus 292 lG~~G~ll~~ 301 (302)
T PF14870_consen 292 LGQDGVLLRY 301 (302)
T ss_dssp E-STTEEEEE
T ss_pred ECCCcEEEEe
Confidence 5578887665
No 412
>PHA02790 Kelch-like protein; Provisional
Probab=92.86 E-value=6.6 Score=44.52 Aligned_cols=182 Identities=9% Similarity=0.055 Sum_probs=92.8
Q ss_pred eEEEEeCC-----CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEEcCCCeEEEeccCCc
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG--KVRIWEVRRCQVVDYTDIRE 471 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg--~V~iwdl~~~~~~~~~~~~~ 471 (755)
.++.|+.+ .++..||..+++....-. ....-.+++ .- ++.+.+.|+.++ .+..||..+.+-........
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 55666654 357788888776544332 111111222 22 677888887643 57888877665443333322
Q ss_pred ceEE-EEEccCCCeEEEEeCCC---cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 472 IVSA-VCYCPDGKGGIVGTMTG---NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 472 ~V~~-v~~spdg~~la~gs~dg---~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
.... ....-+|+..++|+.++ .+..||..++.-..... ..........+.+ ++...+.| |.+.+
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~------m~~~r~~~~~~~~---~~~IYv~G---G~~e~ 419 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS------TYYPHYKSCALVF---GRRLFLVG---RNAEF 419 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC------CCCccccceEEEE---CCEEEEEC---CceEE
Confidence 2211 12223777778877654 47788888765432111 1111111122222 55666666 35677
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
||..+..-............ .+++ .-+|+..+.||.+ ..|..||..+.+
T Consensus 420 ydp~~~~W~~~~~m~~~r~~-~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 420 YCESSNTWTLIDDPIYPRDN-PELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ecCCCCcEeEcCCCCCCccc-cEEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 88765443332211111111 1222 2477888888754 346677776654
No 413
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.61 E-value=23 Score=42.37 Aligned_cols=158 Identities=12% Similarity=0.074 Sum_probs=89.8
Q ss_pred CeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEE-------------EEEEee-CCCCEEEEEeC----------CCcEEE
Q 004410 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVT-------------SVAFNP-VDDNYFISGSI----------DGKVRI 455 (755)
Q Consensus 400 ~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~-------------~i~fsp-~d~~~l~sgs~----------Dg~V~i 455 (755)
+.++.++.|+.|.-.|.++|+.+..|..++.|. .+.-.| ..++.++.|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 377888889999999999999988775444331 011111 02345666643 688999
Q ss_pred EEcCCCeEEE-eccC---------Cc--------ce-EEEEEccCCCeEEEEeC------------------CCcEEEEE
Q 004410 456 WEVRRCQVVD-YTDI---------RE--------IV-SAVCYCPDGKGGIVGTM------------------TGNCRFYD 498 (755)
Q Consensus 456 wdl~~~~~~~-~~~~---------~~--------~V-~~v~~spdg~~la~gs~------------------dg~I~iwD 498 (755)
+|.++++++- +... .+ .+ ..+++.+....++.+.. .+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 9999998872 2110 00 01 23455555555544332 23455667
Q ss_pred CCCCeEeeeeeEEeccccc--CCC-CCeEEEEEcCCCC---CEEEEEECCCcEEEEECCcceeeEEE
Q 004410 499 IKDNQLYQQNQICLQGKKK--LPG-KRITGFQFSPSDP---SKVIVTSADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~--~~~-~~I~~v~fsp~d~---~~l~s~s~Dg~I~iwd~~~~~~~~~~ 559 (755)
+++++....++........ ... ..+..+. ..++ ..++.++.+|.+.++|..+.+.....
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~--~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLP--DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeee--cCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 7777776544431111000 001 1111222 1133 37888999999999998886655543
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.50 E-value=4.3 Score=44.29 Aligned_cols=151 Identities=12% Similarity=0.090 Sum_probs=78.2
Q ss_pred CcEEEEEEeeCCCCEEEEEe-----------CCC-cEEEEEcCC--Ce---EEEeccCCcceEEEEEccCCCeEEEEeCC
Q 004410 429 NYVTSVAFNPVDDNYFISGS-----------IDG-KVRIWEVRR--CQ---VVDYTDIREIVSAVCYCPDGKGGIVGTMT 491 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs-----------~Dg-~V~iwdl~~--~~---~~~~~~~~~~V~~v~~spdg~~la~gs~d 491 (755)
.....|+|.+ +++++++-. ..+ .|.+++-.+ ++ ...+...-...+.+++.++| |+++...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4567788888 888777643 223 676665432 22 12233333456889999988 5555544
Q ss_pred CcEEEEECCCCeEee-eeeEEecccc---cCCCCCeEEEEEcCCCCCEEEEEECC-------------------CcEEEE
Q 004410 492 GNCRFYDIKDNQLYQ-QNQICLQGKK---KLPGKRITGFQFSPSDPSKVIVTSAD-------------------SLVRVL 548 (755)
Q Consensus 492 g~I~iwD~~~~~~~~-~~~~~~~~~~---~~~~~~I~~v~fsp~d~~~l~s~s~D-------------------g~I~iw 548 (755)
...++.|........ .....+.+.. ..+......++|.| ++.+.++.+.. +.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 433344554321110 1111111111 11245678899999 77766554421 334444
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
+.......... .+ ......++|+++|+++++-..+
T Consensus 170 ~pdg~~~e~~a--~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDGGKLRVVA--HG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCCCeEEEEe--cC-cCCCccceECCCCCEEEEccCC
Confidence 44332222111 22 2345678999999887765433
No 415
>PHA02713 hypothetical protein; Provisional
Probab=92.47 E-value=3.7 Score=47.47 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=51.8
Q ss_pred cEEEEeCCCCeEEEEEecCCc--EEEEEEeeCCCCEEEEEeCC------CcEEEEEcCCCeEEEeccCCcce-EEEEEcc
Q 004410 410 TVRLWQVGIDRCLRVFSHNNY--VTSVAFNPVDDNYFISGSID------GKVRIWEVRRCQVVDYTDIREIV-SAVCYCP 480 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~~~--V~~i~fsp~d~~~l~sgs~D------g~V~iwdl~~~~~~~~~~~~~~V-~~v~~sp 480 (755)
.+..||..+++....-.-... -.+++. - ++.+++.|+.+ ..+..||..+..-.......... ......-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 567788877665433221111 122332 2 67778888754 34778898877544333222111 1112223
Q ss_pred CCCeEEEEeCCC-----cEEEEECCCCeE
Q 004410 481 DGKGGIVGTMTG-----NCRFYDIKDNQL 504 (755)
Q Consensus 481 dg~~la~gs~dg-----~I~iwD~~~~~~ 504 (755)
+|+..++|+.++ .+..||..++.-
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 778888888764 388899887653
No 416
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.45 E-value=20 Score=39.48 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=55.4
Q ss_pred EEEEcCCC-eEEEEeCCCcEEE---EeCC-----CCeEEEEE----ecC--CcEEEEEEeeC----------CCCEEEEE
Q 004410 393 DLSWSKNG-FLLSSSADKTVRL---WQVG-----IDRCLRVF----SHN--NYVTSVAFNPV----------DDNYFISG 447 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~i---Wdl~-----s~~~~~~~----~h~--~~V~~i~fsp~----------d~~~l~sg 447 (755)
.++.+|++ .|+.+..++.+.+ |+.. .+...... .+. ..|+++.+-|. |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 35667777 6666666666555 5331 11222222 122 57888888763 45789999
Q ss_pred eCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc
Q 004410 448 SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (755)
Q Consensus 448 s~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp 480 (755)
..+|.|++|......+....-|.++|..|....
T Consensus 86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 999999999985544434455677777776654
No 417
>PRK10115 protease 2; Provisional
Probab=92.45 E-value=29 Score=41.31 Aligned_cols=197 Identities=9% Similarity=0.085 Sum_probs=90.7
Q ss_pred EEEEEcCCC-eEEEEeC-C-----CcEEEEeCCCC--eEEEEEec-CCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEc
Q 004410 392 LDLSWSKNG-FLLSSSA-D-----KTVRLWQVGID--RCLRVFSH-NNYVTSVAFNPVDDNYFISGSI---DGKVRIWEV 458 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~-D-----g~V~iWdl~s~--~~~~~~~h-~~~V~~i~fsp~d~~~l~sgs~---Dg~V~iwdl 458 (755)
..++|.+++ .|+.... + ..|+.+++.++ +-...+.. .....-..+.+.++++++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 348898887 4443332 2 36888888887 44444442 2222212233336776655443 356888884
Q ss_pred C--CCeEEEeccCC-cceEEEEEccCCCeEEEEeCCC--c--EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 459 R--RCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTG--N--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 459 ~--~~~~~~~~~~~-~~V~~v~~spdg~~la~gs~dg--~--I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
. ++......... .....+. + .+..|.+-+..+ . |...++.+.. .....+.. .....|..+.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~~~~~~---~~~~l~~~---~~~~~i~~~~~~-- 324 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTRVRDEQ---QWEELIPP---RENIMLEGFTLF-- 324 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEE-e-CCCEEEEEEcCCCCCceEEEecCCCcc---cCeEEECC---CCCCEEEEEEEE--
Confidence 3 33322222222 2222222 2 234444444322 2 3333443211 01110111 123467788886
Q ss_pred CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe--cCC-CEEEEEeC---CCcEEEEEcCCCC
Q 004410 532 DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT--SDG-KHVVSPSE---DSNIYIWNYSNQD 598 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs--pdg-~~L~sgs~---Dg~I~iWd~~~~~ 598 (755)
...++++...++.-+++-..................+..+.++ +++ .++++.+. -+.|+.+|+.+++
T Consensus 325 ~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 325 TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3466667777777666544321111111111112223333344 333 34444433 4678999988765
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.26 E-value=5.6 Score=45.88 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=74.2
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC-CCCCEEEEEECCCcEEEEEC
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP-SDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp-~d~~~l~s~s~Dg~I~iwd~ 550 (755)
.++-+.-+.-++..++-.....+.|||.+.+.+..+... .....|.++.|.. .+++.+++.+..+.|.+|.-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-------cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 344455555556555555556799999999886543221 3457889998853 27788888899999998852
Q ss_pred C-----cc----eeeEEEeeeccC-CceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 551 E-----NV----VGKFKASAFRVA-GSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 551 ~-----~~----~~~~~~~~~~~~-~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
. +. ....+.....++ .+|.+.+|.++|.+++.++ +.++|++-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 1 11 111111112333 6789999999998777664 578888743
No 419
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.21 E-value=7.7 Score=38.18 Aligned_cols=146 Identities=9% Similarity=0.096 Sum_probs=79.2
Q ss_pred CEEEEEeCCCcEEEEEcC--CCeEEEeccCCcceEEEEEccCCCeEEEEeCCC------cEEEE-ECCCC----eEeeee
Q 004410 442 NYFISGSIDGKVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG------NCRFY-DIKDN----QLYQQN 508 (755)
Q Consensus 442 ~~l~sgs~Dg~V~iwdl~--~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg------~I~iw-D~~~~----~~~~~~ 508 (755)
+.|+.+....+|.+|++. ..+.......-+.|..+.++..|++|++-=.+. .+|+| +.+.. ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~-- 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR-- 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE--
Confidence 455444667889999998 344555555568899999999999999854322 46665 22211 1111
Q ss_pred eEEeccc-----------------ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee--------eEEEeeec
Q 004410 509 QICLQGK-----------------KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG--------KFKASAFR 563 (755)
Q Consensus 509 ~~~~~~~-----------------~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~--------~~~~~~~~ 563 (755)
.-+-|+ .-.......+++..|..|++++. .++.+.||.+..... .|......
T Consensus 107 -vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg--~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~ 183 (215)
T PF14761_consen 107 -VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG--CGNKLVLFTLKYQTIQSEKFSFLDFERSLID 183 (215)
T ss_pred -EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE--cCCEEEEEEEEEEEEecccccEEechhhhhh
Confidence 001110 00123467788888866665543 345677776543222 11000011
Q ss_pred cCC--ceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 564 VAG--SQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 564 ~~~--~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
|.. ....++| -+.|+|..+.. .+++..+.
T Consensus 184 ~~~~~~p~~v~i--c~~yiA~~s~~-ev~Vlkl~ 214 (215)
T PF14761_consen 184 HIDNFKPTQVAI--CEGYIAVMSDL-EVLVLKLE 214 (215)
T ss_pred eecCceEEEEEE--EeeEEEEecCC-EEEEEEEe
Confidence 111 1333444 35677777654 67776653
No 420
>PF08145 BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR012953 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This N-terminal domain is found in BOP1-like WD40 proteins. Bop1 is a nucleolar protein involved in rRNA processing, thereby controlling the cell cycle []. It is required for the maturation of the 25S and 5.8S ribosomal RNAs. It may serve as an essential factor in ribosome formation that coordinates processing of the spacer regions in pre-rRNA. The Pes1-Bop1 complex has several components: BOP1, GRWD1, PES1, ORC6L, and RPL3 and is involved in ribosome biogenesis and altered chromosome segregation. The overexpression of BOP1 increases the percentage of multipolar spindles in human cells. Deregulation of the BOP1 pathway may contribute to colorectal tumourigenesis in humans []. Elevated levels of Bop1 induces Bop1/WDR12 and Bop1/Pes1 subcomplexes and the assembly and integrity of the PeBoW complex is highly sensitive to changes in Bop1 protein levels []. Nop7p-Erb1p-Ytm1p, found in yeast, is potentially the homologous complex of Pes1-Bop1-WDR12 as it is involved in the control of ribosome biogenesis and S phase entry. The integrity of the PeBoW complex is required for ribosome biogenesis and cell proliferation in mammalian cells []. In Giardia, the species specific cytoskeleton protein, beta-giardin, interacts with Bop1 []. ; GO: 0006364 rRNA processing, 0005634 nucleus
Probab=92.06 E-value=0.024 Score=56.74 Aligned_cols=67 Identities=7% Similarity=0.022 Sum_probs=55.8
Q ss_pred eCCCCceEEEccCCCchhhhhhcccccCCCccccccccccCCCCCCccccCCCCcCcchhhhhhhhhhhhcccccccc
Q 004410 151 DWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKL 228 (755)
Q Consensus 151 ~ld~g~~~~~~~~~~~~~~~~~~lr~v~~~~~~~~e~f~~~~~~sp~~~~~l~r~~~~~~~~~~~~~k~~~~~w~~~~ 228 (755)
..|+...|+++++.+ ||.|+.+..+..|+|++|++ +|+.+..++...++.+....++...+.-|+++
T Consensus 193 pedR~~~fiP~k~~s--------LR~Vp~Y~~~i~ErFeRCLD---LYLcPR~~k~rlnidPesLlPkLP~p~dLrPF 259 (260)
T PF08145_consen 193 PEDRKKNFIPQKFDS--------LRKVPAYENFIKERFERCLD---LYLCPRVRKKRLNIDPESLLPKLPSPKDLRPF 259 (260)
T ss_pred chhccccccchhhhh--------hhccchHHHHHHHHHHHhhh---hhcCcHhhcccCCCCHHHhCCCCcChHhcCCC
Confidence 356788999999988 99999999999999999999 67888888888888777667777766666554
No 421
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.99 E-value=20 Score=38.44 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=45.8
Q ss_pred EEEecCCcEEEEEEeeC------CCCEEEEEeCCCcEEEEEcCCC-eEE---E-eccCCcceEEEEEccCCCeEEEEeCC
Q 004410 423 RVFSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRC-QVV---D-YTDIREIVSAVCYCPDGKGGIVGTMT 491 (755)
Q Consensus 423 ~~~~h~~~V~~i~fsp~------d~~~l~sgs~Dg~V~iwdl~~~-~~~---~-~~~~~~~V~~v~~spdg~~la~gs~d 491 (755)
..+.+...++.+.|... .+.+|++.-..+.|....+... .+. . +......+..|++.|||.+.++-..+
T Consensus 247 ~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 247 FAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp EEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred eeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence 34446677888888752 3446666665678888887644 322 1 22344479999999999888887778
Q ss_pred CcEE
Q 004410 492 GNCR 495 (755)
Q Consensus 492 g~I~ 495 (755)
|.|+
T Consensus 327 G~iy 330 (331)
T PF07995_consen 327 GKIY 330 (331)
T ss_dssp TTEE
T ss_pred CeEe
Confidence 8764
No 422
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.95 E-value=0.37 Score=47.29 Aligned_cols=100 Identities=12% Similarity=0.152 Sum_probs=60.3
Q ss_pred eEEEEeCCCcEEEEeCCCCeE-EEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc--ceEEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE--IVSAV 476 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~-~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~--~V~~v 476 (755)
.++.|+.+|.|.+|+...... ...+ .....|.++--.-.++.+..++..||.||.|++.-.+.+....+.. .+..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 789999999999998762111 1111 1223343333332355689999999999999999888875444333 33333
Q ss_pred EEccCCCeEEEE--eCCCcEEEEECC
Q 004410 477 CYCPDGKGGIVG--TMTGNCRFYDIK 500 (755)
Q Consensus 477 ~~spdg~~la~g--s~dg~I~iwD~~ 500 (755)
.....+..++++ +.+..++.|++.
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchh
Confidence 344444444444 555555555554
No 423
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.94 E-value=9.8 Score=40.69 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=92.5
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCc------EEEEEcCC-----CeE-----EEeccCCc--------ceEEEEEccCCC
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGK------VRIWEVRR-----CQV-----VDYTDIRE--------IVSAVCYCPDGK 483 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~------V~iwdl~~-----~~~-----~~~~~~~~--------~V~~v~~spdg~ 483 (755)
-+.+..|.+.| ++..+++.+.+|. +..+++.. ..+ ..+....+ -.-+|++.++|.
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35567788876 5566666677776 55555543 111 11122111 234778867777
Q ss_pred eEEEEeCC------CcEEEEECCCCeEeeeeeEEecc-------cccCCCCCeEEEEEcCCCCCEEEEEEC-----CC--
Q 004410 484 GGIVGTMT------GNCRFYDIKDNQLYQQNQICLQG-------KKKLPGKRITGFQFSPSDPSKVIVTSA-----DS-- 543 (755)
Q Consensus 484 ~la~gs~d------g~I~iwD~~~~~~~~~~~~~~~~-------~~~~~~~~I~~v~fsp~d~~~l~s~s~-----Dg-- 543 (755)
++++.=.+ ..|+.++.. ++....+.+...- .....+..+.+|+++| +++.|++... |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECccccCCCcc
Confidence 66665555 678888877 5555444322111 2233567799999999 7775555432 22
Q ss_pred -------cEEEEE--CCc-c--eeeEEEeeec-----cCCceEEEEEecCCCEEEEEe-----CCCcEEEEEcC
Q 004410 544 -------LVRVLC--GEN-V--VGKFKASAFR-----VAGSQMFATFTSDGKHVVSPS-----EDSNIYIWNYS 595 (755)
Q Consensus 544 -------~I~iwd--~~~-~--~~~~~~~~~~-----~~~~v~~l~fspdg~~L~sgs-----~Dg~I~iWd~~ 595 (755)
.++|+. ..+ . ...+...... ....+..+.+-+++++|+-== ....++|+.+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 155544 332 1 3334333232 356788899999998776422 23345555444
No 424
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=22 Score=38.74 Aligned_cols=158 Identities=19% Similarity=0.293 Sum_probs=89.0
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccc-cccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSREL-SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~-~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~ 319 (755)
+-|.-.++.|.+. ..|.+.=|.++.....+ ..+ -...+|+|.+++||+|.+.||.--.|++|.+.+....+..
T Consensus 28 vFfDDaNkqlfav-rSggatgvvvkgpndDVpiSf-----dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 28 VFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISF-----DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred eeeccCcceEEEE-ecCCeeEEEEeCCCCCCCcee-----eecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 4455444544433 33445556554332211 111 1235679999999999999999999999999987433221
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
..+ .++.+.....|....|+.+
T Consensus 102 l~~----------------------------------------------------------~~~ck~k~~~IlGF~W~~s 123 (657)
T KOG2377|consen 102 LEY----------------------------------------------------------TQECKTKNANILGFCWTSS 123 (657)
T ss_pred hHH----------------------------------------------------------HHHhccCcceeEEEEEecC
Confidence 111 1112223445788888876
Q ss_pred CeEEEEeCCCcEEEEeCCCCe-EEEEE-ecCCcEEEEEEeeCCCCEEEEE-e-CCCcEEEEEcCCCeEE
Q 004410 400 GFLLSSSADKTVRLWQVGIDR-CLRVF-SHNNYVTSVAFNPVDDNYFISG-S-IDGKVRIWEVRRCQVV 464 (755)
Q Consensus 400 ~~L~s~s~Dg~V~iWdl~s~~-~~~~~-~h~~~V~~i~fsp~d~~~l~sg-s-~Dg~V~iwdl~~~~~~ 464 (755)
..++..+..| +-+|.+...+ .++.. .|+..|.-..|++ +.+.++-+ + ..+++.=+-++++.+.
T Consensus 124 ~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 124 TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEeeeccccccccccEEEeeceee
Confidence 6555555444 5666543322 22222 3778888888988 55554333 3 3444444555554444
No 425
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=9.6 Score=37.13 Aligned_cols=175 Identities=9% Similarity=0.042 Sum_probs=96.4
Q ss_pred eEEEEeC--CCcEEEEeCCCCeEEEEEecC-CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEE
Q 004410 401 FLLSSSA--DKTVRLWQVGIDRCLRVFSHN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVC 477 (755)
Q Consensus 401 ~L~s~s~--Dg~V~iWdl~s~~~~~~~~h~-~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~ 477 (755)
++.+.+. ...|++||+.+++.+...... ..+..=-.....+.+..-.-.+|.-.++|.++.+.+......+.-..++
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt 137 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLT 137 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeee
Confidence 5555553 346999999999887665422 2222111111112223334467888899999888775555555555555
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE----------EEECCCcEEE
Q 004410 478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI----------VTSADSLVRV 547 (755)
Q Consensus 478 ~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~----------s~s~Dg~I~i 547 (755)
. |++.|+.+....++++-|..+.......++...+... ..++.+.|- ++..++ .--..|.|.-
T Consensus 138 ~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv---~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 138 S--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPV---SKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred c--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeec---ccccceeee--ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 5 6777888777778888888887777666666555322 222223332 122221 2222333333
Q ss_pred E-ECCcceeeEEEeeeccCCceEEEEEecCC-CEEEEE
Q 004410 548 L-CGENVVGKFKASAFRVAGSQMFATFTSDG-KHVVSP 583 (755)
Q Consensus 548 w-d~~~~~~~~~~~~~~~~~~v~~l~fspdg-~~L~sg 583 (755)
| |+......... ...+....+.+++.|++ +++++|
T Consensus 211 widlS~L~~~~~~-~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNL-DKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCc-cccccccccceeecCcCCeEEEec
Confidence 3 33332222211 12345567788998887 555655
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.55 E-value=6.1 Score=39.11 Aligned_cols=218 Identities=11% Similarity=0.019 Sum_probs=103.4
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCC--CEEEE-EeCCCcEEEEEcCCC--eEEE------eccC
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD--NYFIS-GSIDGKVRIWEVRRC--QVVD------YTDI 469 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~--~~l~s-gs~Dg~V~iwdl~~~--~~~~------~~~~ 469 (755)
++..-=..+.|.-||+.+.+..+.--....+..+.+ |..+ ..+++ ++..-.|.-||.... .+.. -...
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCcceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 333333456677799887665443322222333333 3222 23333 333233444663222 1111 1112
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
+.....-..+|+|++ ..|+....-..+....+.+.....-+........-.--++++|.-+...+.++-+.+-.|.-||
T Consensus 108 knR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred hcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 345666778999998 4554422111222222222211000000000011123356888874455666777788888888
Q ss_pred CCcc-------eeeEEEeeec--cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc--cCCCccccceeeeecCCe
Q 004410 550 GENV-------VGKFKASAFR--VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS--SSRSKSIWSCESFLSHNV 618 (755)
Q Consensus 550 ~~~~-------~~~~~~~~~~--~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~--~~~~~~~~~~~~f~~~~~ 618 (755)
.... ...+...... ..-..-.+++..+|.+.++.-..++|...|..+|+.. .+.+..-.++-+|...+.
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~ 266 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNL 266 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCc
Confidence 3321 1111111000 1111234556678888888888999999999999832 222222234446665544
Q ss_pred EE
Q 004410 619 SV 620 (755)
Q Consensus 619 ~v 620 (755)
.+
T Consensus 267 d~ 268 (310)
T KOG4499|consen 267 DI 268 (310)
T ss_pred cE
Confidence 43
No 427
>PHA03098 kelch-like protein; Provisional
Probab=90.51 E-value=14 Score=42.45 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=54.5
Q ss_pred eEEEEeCC-----CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEEcCCCeEEEec
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D------g~V~iwdl~~~~~~~~~ 467 (755)
.++.|+.+ ..+..||..+++....-. +...-.+++. - ++.+++.|+.+ ..+..||..+.+-....
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 55555544 357788887765443221 1111122222 2 56777777742 35888998876544322
Q ss_pred cCCcce-EEEEEccCCCeEEEEeCCC--------cEEEEECCCCeEe
Q 004410 468 DIREIV-SAVCYCPDGKGGIVGTMTG--------NCRFYDIKDNQLY 505 (755)
Q Consensus 468 ~~~~~V-~~v~~spdg~~la~gs~dg--------~I~iwD~~~~~~~ 505 (755)
...... ...+...+++.+++|+.++ .+.+||..+++-.
T Consensus 423 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 423 PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 211111 1112223666777776432 3888998877543
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.24 E-value=9.9 Score=45.03 Aligned_cols=88 Identities=11% Similarity=0.006 Sum_probs=57.6
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC---------CeEe---eeeeEEecccccCCCCCeEEEEEcCCC--
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD---------NQLY---QQNQICLQGKKKLPGKRITGFQFSPSD-- 532 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~---------~~~~---~~~~~~~~~~~~~~~~~I~~v~fsp~d-- 532 (755)
....-.|..|.++|+|.+|+..+..|.+.+.=.+. ++.. ....+...-........|..+.|+|..
T Consensus 81 ~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 81 NPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 33445789999999999999988876654443221 1111 111111111122345679999999952
Q ss_pred CCEEEEEECCCcEEEEECCcce
Q 004410 533 PSKVIVTSADSLVRVLCGENVV 554 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~ 554 (755)
+..|++-..|+++|+||+.+..
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCC
Confidence 6899999999999999987643
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.12 E-value=4.7 Score=44.18 Aligned_cols=145 Identities=15% Similarity=0.169 Sum_probs=89.2
Q ss_pred CCCEEE-EEeCCCcEEEEEcCCCeEEE-eccCCcceEEEEEccCCC-------eEEEEeCCCcEEEEECCCC--eEeeee
Q 004410 440 DDNYFI-SGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGK-------GGIVGTMTGNCRFYDIKDN--QLYQQN 508 (755)
Q Consensus 440 d~~~l~-sgs~Dg~V~iwdl~~~~~~~-~~~~~~~V~~v~~spdg~-------~la~gs~dg~I~iwD~~~~--~~~~~~ 508 (755)
+.++++ .|....+++-.|+..|+++. |..+.. + -+.|.|+.+ .-++|-.+..|.-.|.+-. ++...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~- 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV- 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-
Confidence 455544 46666788889999999994 554444 4 578888532 3355666666666676532 22111
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
..+.........+..- ....+|++++..|.|++||--....+-.. .+....|..+..+.+|++|++.+. ..
T Consensus 555 ----esKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDRig~rAKtal--P~lG~aIk~idvta~Gk~ilaTCk-~y 625 (776)
T COG5167 555 ----ESKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDRIGKRAKTAL--PGLGDAIKHIDVTANGKHILATCK-NY 625 (776)
T ss_pred ----eehhcccccccccccc--ccCceEEEecCCCceeeehhhcchhhhcC--cccccceeeeEeecCCcEEEEeec-ce
Confidence 1111011111222111 15679999999999999995543333222 445567888999999999888775 47
Q ss_pred EEEEEcCC
Q 004410 589 IYIWNYSN 596 (755)
Q Consensus 589 I~iWd~~~ 596 (755)
|.+-|+.-
T Consensus 626 llL~d~~i 633 (776)
T COG5167 626 LLLTDVPI 633 (776)
T ss_pred EEEEeccc
Confidence 77777653
No 430
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.86 E-value=1 Score=31.93 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=26.6
Q ss_pred ccEEEEEEecCC---CEEEEEcCCCcEEEEEccC
Q 004410 285 GSILTMKFSLDG---QYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 285 ~~V~~l~fspdg---~~LaSgs~Dg~I~vWdv~~ 315 (755)
|+|.+|+|+|+. .+||.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999854 5899888889999999975
No 431
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.35 E-value=25 Score=35.86 Aligned_cols=189 Identities=10% Similarity=0.068 Sum_probs=120.8
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
..-.+++-.+|| .-.++...+.|--.|..+++....- .....-..|...| |+..-++-+.. -|.-.|-++.++..+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEe
Confidence 345567788888 6677777788888888888776543 4555567778888 77766664433 455566666666543
Q ss_pred cc----CCcceEEEEEccCCCeEEEEeCC---------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 467 TD----IREIVSAVCYCPDGKGGIVGTMT---------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 467 ~~----~~~~V~~v~~spdg~~la~gs~d---------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
.- .........|.+.|.+-+++... +.|++|+.- .+..-+.|+..| ++
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------------qG~gpyGi~atp-dG 200 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------------QGGGPYGICATP-DG 200 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------------CCCCCcceEECC-CC
Confidence 32 23456788999999888876531 223333332 234567888999 88
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..-++.-.++.|-..|..................-..+.-+|.|+.-+|....+.++.+|-.+..
T Consensus 201 svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 87777777788877776554322222111212233445557788888887777888888766544
No 432
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.23 E-value=32 Score=36.22 Aligned_cols=191 Identities=8% Similarity=0.040 Sum_probs=86.8
Q ss_pred EEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE--E
Q 004410 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--V 464 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~--~ 464 (755)
...+.|..+..++ ++..+.| +--.+.++.-..+. .......+.... ++..++ .+..|.|+.= ...++. .
T Consensus 64 l~~I~f~~~~g~i-vG~~g~l-l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T-~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDGNEGWI-VGEPGLL-LHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYRT-TDGGKTWQA 138 (302)
T ss_dssp EEEEEEETTEEEE-EEETTEE-EEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEEE-SSTTSSEEE
T ss_pred EEEEEecCCceEE-EcCCceE-EEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEEe-CCCCCCeeE
Confidence 4566665433333 3444433 33333333222221 223344444444 333333 3444544321 222221 1
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
........+..+..++||++++++..-....-||--...-. .+......+|..|.|.| ++.+.+++ ..|.
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~--------~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~ 208 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ--------PHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQ 208 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E--------EEE--SSS-EEEEEE-T-TS-EEEEE-TTTE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccce--------EEccCccceehhceecC-CCCEEEEe-CCcE
Confidence 23344567888999999999988765544556765432111 11223457899999999 65555544 8888
Q ss_pred EEEEECCcceeeEEEeee---ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKASAF---RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~---~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|++=+.......+..... ...-.+.+++|.+++...++|+. |. .+...+.|+
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGk 263 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGK 263 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTS
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCc
Confidence 888873333333322111 12334789999998877776654 43 344555555
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.14 E-value=8.5 Score=44.89 Aligned_cols=122 Identities=12% Similarity=0.110 Sum_probs=75.9
Q ss_pred ceEEEEEcc--CCCeEEEEeCCCcEEEEECCCCe---------Eee-eeeEEecc-cccCCCCCeEEEEEc--CCCCCEE
Q 004410 472 IVSAVCYCP--DGKGGIVGTMTGNCRFYDIKDNQ---------LYQ-QNQICLQG-KKKLPGKRITGFQFS--PSDPSKV 536 (755)
Q Consensus 472 ~V~~v~~sp--dg~~la~gs~dg~I~iwD~~~~~---------~~~-~~~~~~~~-~~~~~~~~I~~v~fs--p~d~~~l 536 (755)
.|+.|...- +...|+++..||.|.+|.++.-. ... ........ .........++++++ . ..++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence 355554443 45678899999999999763100 000 00000000 011124578999998 6 77889
Q ss_pred EEEECCCcEEEEECCcceeeE-EEeeeccCCceEEEEEecCC-----C-EEEEEeCCCcEEEEEc
Q 004410 537 IVTSADSLVRVLCGENVVGKF-KASAFRVAGSQMFATFTSDG-----K-HVVSPSEDSNIYIWNY 594 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~~v~~l~fspdg-----~-~L~sgs~Dg~I~iWd~ 594 (755)
|+++....|.||-.......+ ......+...|-+++|-++. . +|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999988888887654421111 11123466788899996643 2 7888999999999888
No 434
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.08 E-value=0.052 Score=62.26 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=45.5
Q ss_pred eecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEE-----------EecCCCEEEEEcCCCcEEE
Q 004410 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK-----------FSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 242 ~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~-----------fspdg~~LaSgs~Dg~I~v 310 (755)
-|-++.-++..+-+++.|++..+..... ..+.+|...+..++ .||||+.+|+++.||.++.
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~--------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALR--------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHH--------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 3445556777888889998877654332 12445665555544 5889999999999999999
Q ss_pred EEcc
Q 004410 311 WKVI 314 (755)
Q Consensus 311 Wdv~ 314 (755)
|.+.
T Consensus 262 ~Qiy 265 (1283)
T KOG1916|consen 262 YQIY 265 (1283)
T ss_pred eeee
Confidence 8763
No 435
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.65 E-value=43 Score=36.98 Aligned_cols=147 Identities=13% Similarity=0.228 Sum_probs=89.5
Q ss_pred eeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC---C-C-eEEEEeCCCcEEEEeCCCC--------
Q 004410 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK---N-G-FLLSSSADKTVRLWQVGID-------- 419 (755)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~---~-~-~L~s~s~Dg~V~iWdl~s~-------- 419 (755)
.....+.++..+.+.++.+.........+.--..-..+|..+..-+ . . ..++.=.-+.+.||.+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3455666777788888877443322212221222346777776542 1 2 4444566677888876211
Q ss_pred --eEEEEEec--CCcEEEEEEeeC---C-CCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC
Q 004410 420 --RCLRVFSH--NNYVTSVAFNPV---D-DNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT 491 (755)
Q Consensus 420 --~~~~~~~h--~~~V~~i~fsp~---d-~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d 491 (755)
+....+.| ......+++-|- . .+++.+-+.||.+.+++-+..........---...++|.+.-..|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 12222233 233344444332 2 467888999999999998876654444334445568899988999999999
Q ss_pred CcEEEEEC
Q 004410 492 GNCRFYDI 499 (755)
Q Consensus 492 g~I~iwD~ 499 (755)
..+..|..
T Consensus 196 ~~l~~Yky 203 (418)
T PF14727_consen 196 WTLECYKY 203 (418)
T ss_pred eeEEEecH
Confidence 99998865
No 436
>PLN02153 epithiospecifier protein
Probab=88.48 E-value=39 Score=36.27 Aligned_cols=95 Identities=11% Similarity=0.135 Sum_probs=49.4
Q ss_pred cEEEEeCCCCeEEEEEecC--CcE--EEEEEeeCCCCEEEEEeCC-----CcEEEEEcCCCeEEEeccC-----C-cceE
Q 004410 410 TVRLWQVGIDRCLRVFSHN--NYV--TSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDI-----R-EIVS 474 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~--~~V--~~i~fsp~d~~~l~sgs~D-----g~V~iwdl~~~~~~~~~~~-----~-~~V~ 474 (755)
.+.+||+.+.+-...-... ... ...+....++.+++.|+.+ ..+.+||+.+.+-...... . ....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~ 130 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF 130 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee
Confidence 5888998877654322111 111 1111111256777777754 3578889887654432221 1 1112
Q ss_pred EEEEccCCCeEEEEeCC-----------CcEEEEECCCCeE
Q 004410 475 AVCYCPDGKGGIVGTMT-----------GNCRFYDIKDNQL 504 (755)
Q Consensus 475 ~v~~spdg~~la~gs~d-----------g~I~iwD~~~~~~ 504 (755)
..+..-+++.++.|+.+ ..+.+||+.+..-
T Consensus 131 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 131 HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 22223356677777653 2477888887653
No 437
>PLN02193 nitrile-specifier protein
Probab=88.47 E-value=49 Score=37.40 Aligned_cols=177 Identities=8% Similarity=-0.020 Sum_probs=84.2
Q ss_pred eEEEEeCC-------CcEEEEeCCCCeEEEEEe---cCC--cEE-EEEEeeCCCCEEEEEeCC-----CcEEEEEcCCCe
Q 004410 401 FLLSSSAD-------KTVRLWQVGIDRCLRVFS---HNN--YVT-SVAFNPVDDNYFISGSID-----GKVRIWEVRRCQ 462 (755)
Q Consensus 401 ~L~s~s~D-------g~V~iWdl~s~~~~~~~~---h~~--~V~-~i~fsp~d~~~l~sgs~D-----g~V~iwdl~~~~ 462 (755)
.++.|+.+ ..+.+||+.+.+-...-. ... ... +++. - ++.+++.|+.+ ..+..||+.+.+
T Consensus 178 iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~-~-~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 178 IYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVS-I-GSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred EEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEE-E-CCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 55555542 347788988776543211 011 111 1222 2 56777777765 358889988766
Q ss_pred EEEeccC---Ccc--eEEEEEccCCCeEEEEeCCC-----cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 463 VVDYTDI---REI--VSAVCYCPDGKGGIVGTMTG-----NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 463 ~~~~~~~---~~~--V~~v~~spdg~~la~gs~dg-----~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
-...... ..+ -.++ ..-+++.++.|+.++ .+..||+.+..-.... ..+...........+.+ +
T Consensus 256 W~~l~~~~~~P~~R~~h~~-~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~~~~R~~~~~~~~---~ 328 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSM-AADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCS---TPGDSFSIRGGAGLEVV---Q 328 (470)
T ss_pred EEEcCcCCCCCCCccceEE-EEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCC---CCCCCCCCCCCcEEEEE---C
Confidence 5433221 111 1122 223566677776543 3678888776543210 00001111111122222 4
Q ss_pred CCEEEEEECC----CcEEEEECCcceeeEEEeeec-cCCceEEEEEecCCCEEEEEeCC
Q 004410 533 PSKVIVTSAD----SLVRVLCGENVVGKFKASAFR-VAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 533 ~~~l~s~s~D----g~I~iwd~~~~~~~~~~~~~~-~~~~v~~l~fspdg~~L~sgs~D 586 (755)
+++++.++.+ ..+.+||..+........... ........+..-++++++.|+.+
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 5677777655 457888887654433221000 11111112223356677777753
No 438
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.60 E-value=19 Score=44.58 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=50.1
Q ss_pred eEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 382 ~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
..+.-|..++.+..+.....++.+..-+.+-+|+.........+... .....+ ++..++++..||.+..||...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 192 LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPN----GQLESR-DGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccc----cccCcc-CCceEEEEEecCCEEeeecCCC
Confidence 34445566666666665554555566677777775544443333211 111155 8999999999999999999987
Q ss_pred eEE
Q 004410 462 QVV 464 (755)
Q Consensus 462 ~~~ 464 (755)
+.+
T Consensus 267 ~~~ 269 (993)
T KOG1983|consen 267 KLQ 269 (993)
T ss_pred cee
Confidence 653
No 439
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.44 E-value=39 Score=35.15 Aligned_cols=205 Identities=14% Similarity=0.125 Sum_probs=110.5
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCC------CCeE-EEEEe------cCCcEEEEEEeeCCCC------------E
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVG------IDRC-LRVFS------HNNYVTSVAFNPVDDN------------Y 443 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~------s~~~-~~~~~------h~~~V~~i~fsp~d~~------------~ 443 (755)
.-+.|+++|.+ .-++...-+...+||.. ..+. +-.+. .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 45789999988 55666667889999986 2222 22222 235788898886 333 3
Q ss_pred EEEEeCCCcEEEEEcCCC------eEEEeccC-Ccc-eEEEEEcc--CCCeEEEE-eCCCcEEEEECCCCeEeeeeeEEe
Q 004410 444 FISGSIDGKVRIWEVRRC------QVVDYTDI-REI-VSAVCYCP--DGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~------~~~~~~~~-~~~-V~~v~~sp--dg~~la~g-s~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
|+.+++||+|.-|...-. ..+..... ... ...+++.. .+.+|..+ -..++|.+||-.-.++...-...
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~- 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI- 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc-
Confidence 677889999999985322 12222211 122 34455543 34555443 45788888886644332110000
Q ss_pred cccccCCCCCeEEEE---------EcCC--CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec------
Q 004410 513 QGKKKLPGKRITGFQ---------FSPS--DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS------ 575 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~---------fsp~--d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp------ 575 (755)
..... ..-.-..++ |..+ +...=+.+..-|.|-++|..-....... ..+.-...+.++..|
T Consensus 182 DP~iP-agyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~a-s~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALP-AGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVA-SSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCC-CCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEec-cCCcccCCceeeeChhhhCCC
Confidence 00000 000001111 1110 1112223334468888887643222111 133334456666644
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 576 DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 576 dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.|.+|+---.||+|..||..+++
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCc
Confidence 57778877789999999998876
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.32 E-value=4 Score=40.84 Aligned_cols=71 Identities=11% Similarity=0.222 Sum_probs=51.1
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec---------------cCCcceEEEEEccCCCeEEEEeCCC
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---------------DIREIVSAVCYCPDGKGGIVGTMTG 492 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~---------------~~~~~V~~v~~spdg~~la~gs~dg 492 (755)
...+..+. . .++++++.+.+|.+++||+.+++.+... .....|..+.++.+|.-|++-+ +|
T Consensus 12 gs~~~~l~--~-~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 12 GSPVSFLE--C-NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred CCceEEEE--e-CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 34444444 3 6789999999999999999998765211 2446688888888887766644 57
Q ss_pred cEEEEECCCC
Q 004410 493 NCRFYDIKDN 502 (755)
Q Consensus 493 ~I~iwD~~~~ 502 (755)
..+.|+..-+
T Consensus 88 ~~y~y~~~L~ 97 (219)
T PF07569_consen 88 DSYSYSPDLG 97 (219)
T ss_pred CEEEeccccc
Confidence 8888886644
No 441
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.90 E-value=26 Score=41.08 Aligned_cols=98 Identities=10% Similarity=0.118 Sum_probs=69.7
Q ss_pred eEEEEeCCCcEEEEeCCC-------C-------------eEEEEEecCCcEEEEEEe--eCCCCEEEEEeCCCcEEEEEc
Q 004410 401 FLLSSSADKTVRLWQVGI-------D-------------RCLRVFSHNNYVTSVAFN--PVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s-------~-------------~~~~~~~h~~~V~~i~fs--p~d~~~l~sgs~Dg~V~iwdl 458 (755)
.|+.+..||.|.+|.+++ . ++...+.....+..++++ . ..+++|+++....|.||-.
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEEEecCCceEEEEEE
Confidence 899999999999996521 0 122233466788999998 6 6788888888888888765
Q ss_pred CCC--eEE--EeccCCcceEEEEEccCC---C---eEEEEeCCCcEEEEEC
Q 004410 459 RRC--QVV--DYTDIREIVSAVCYCPDG---K---GGIVGTMTGNCRFYDI 499 (755)
Q Consensus 459 ~~~--~~~--~~~~~~~~V~~v~~spdg---~---~la~gs~dg~I~iwD~ 499 (755)
... +.. ....+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 442 211 122356678999998743 2 7788899999998887
No 442
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.60 E-value=17 Score=42.12 Aligned_cols=110 Identities=11% Similarity=0.121 Sum_probs=68.8
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec--cCCcceEEEEEc--cCCCeEEEEeCCCcEEEEECC-----C
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIREIVSAVCYC--PDGKGGIVGTMTGNCRFYDIK-----D 501 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~--~~~~~V~~v~~s--pdg~~la~gs~dg~I~iwD~~-----~ 501 (755)
++-+.-+. -++.-++-+....+.|||.+.+...... ...+.|..+.|. |+|+.+++.+....|.+|--. .
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33344443 3444444444567999999998866333 447889999886 488999888889999998542 1
Q ss_pred C----eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 502 N----QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 502 ~----~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
. ..+... .+ .....++|.+..|.+ ++.+++.+ ++.+.|+|
T Consensus 111 ~~p~w~~i~~i--~i---~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKI--DI---SSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFD 154 (631)
T ss_pred CCcccceeEEE--Ee---ecCCCCCccceeEec-CCeEEEEe--CCEEEEEC
Confidence 1 111111 11 122346789999998 66555544 45677776
No 443
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.89 E-value=25 Score=34.36 Aligned_cols=129 Identities=14% Similarity=0.054 Sum_probs=71.0
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE---EEeccCCcce---EEEEEcc
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV---VDYTDIREIV---SAVCYCP 480 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~---~~~~~~~~~V---~~v~~sp 480 (755)
.+|.-..+|..+-+++..+...+.=..++- ++..|+.+....+++.-|..+-.. ++......+| +-+.| -
T Consensus 109 ~egvaf~~d~~t~~~lg~~~y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-V 184 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFSYEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-V 184 (262)
T ss_pred ccceeEEEChHHhhhhcccccCCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-e
Confidence 467778899999999888877776667664 445566665555676666654321 1222222222 22222 1
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe----cccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 481 DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL----QGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 481 dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~----~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
||...|-.=.+..|...|..+++......+.- ......+..-.+++++.|+.++++++|
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44444444444555555666666554332210 011222345678999999665666665
No 444
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.72 E-value=0.42 Score=55.24 Aligned_cols=122 Identities=9% Similarity=0.074 Sum_probs=70.5
Q ss_pred cCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 468 DIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 468 ~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
+..+.+-.+.|-. +...++ -.-|.+.|||+. .|+++..+.+............|..+.|.+ +..++..+-.++.
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGE 206 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCc
Confidence 3445555555532 111222 234677888876 455554444433333222223344444555 5567777888899
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEE-----------EEecCCCEEEEEeCCCcEEEEEcC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFA-----------TFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l-----------~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
|++.........+. ..|...++.+ ..||||+.+++++.||.+++|.+-
T Consensus 207 i~lL~~~ra~~~l~---rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 207 IRLLNINRALRSLF---RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eeEeeechHHHHHH---HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 99877654333221 1244443332 379999999999999999988864
No 445
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.46 E-value=3.6 Score=41.16 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=57.3
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeee-------cccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-------AHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~-------~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
+.+..++++|++-+.+|.++|||+.+....+........+. .....|..+.++.+|.-|++-+ +|....|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 45677899999999999999999998776655432222232 4667899999999998888766 578899987
Q ss_pred cCCe
Q 004410 314 IEHE 317 (755)
Q Consensus 314 ~~~~ 317 (755)
.-+.
T Consensus 95 ~L~~ 98 (219)
T PF07569_consen 95 DLGC 98 (219)
T ss_pred ccce
Confidence 5443
No 446
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.35 E-value=2.5 Score=30.01 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=27.4
Q ss_pred CcEEEEEEeeCCC--CEEEEEeCCCcEEEEEcCC
Q 004410 429 NYVTSVAFNPVDD--NYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 429 ~~V~~i~fsp~d~--~~l~sgs~Dg~V~iwdl~~ 460 (755)
+.|.++.|+|..+ ++|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6899988899999999995
No 447
>PRK10115 protease 2; Provisional
Probab=85.25 E-value=90 Score=37.18 Aligned_cols=68 Identities=7% Similarity=0.003 Sum_probs=42.4
Q ss_pred ceeecCCCCeeEEeeC-----CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC------CcE
Q 004410 240 SATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED------GTV 308 (755)
Q Consensus 240 ~~~~spdg~~lasgs~-----dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D------g~I 308 (755)
.+.++|||++||.+.. ...|+|.++.++..... .+.+ .-..++|++|++.|+....+ ..|
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------LLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------cccC---cceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 4778999998886533 34578888765431111 1111 11458999999877665442 357
Q ss_pred EEEEccCC
Q 004410 309 RVWKVIEH 316 (755)
Q Consensus 309 ~vWdv~~~ 316 (755)
+.+++.++
T Consensus 202 ~~h~lgt~ 209 (686)
T PRK10115 202 WRHTIGTP 209 (686)
T ss_pred EEEECCCC
Confidence 77777776
No 448
>PLN02153 epithiospecifier protein
Probab=85.14 E-value=58 Score=34.90 Aligned_cols=101 Identities=11% Similarity=0.140 Sum_probs=53.3
Q ss_pred eEEEEeCC-----CcEEEEeCCCCeEEEEEec-----C-Cc-EEEEEEeeCCCCEEEEEeCC-----------CcEEEEE
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDRCLRVFSH-----N-NY-VTSVAFNPVDDNYFISGSID-----------GKVRIWE 457 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~~~~~~~h-----~-~~-V~~i~fsp~d~~~l~sgs~D-----------g~V~iwd 457 (755)
.++.|+.+ ..+.+||+.+.+....-.. . .. -.+++. - ++.+++.|+.+ ..|.+||
T Consensus 88 iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-D-ENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred EEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-E-CCEEEEECCccCCCccCCCcccceEEEEE
Confidence 55555542 3578889887765432211 1 11 122222 2 56777777754 2477889
Q ss_pred cCCCeEEEeccCC------cceEEEEEccCCCeEEEEeCC-------------CcEEEEECCCCeEe
Q 004410 458 VRRCQVVDYTDIR------EIVSAVCYCPDGKGGIVGTMT-------------GNCRFYDIKDNQLY 505 (755)
Q Consensus 458 l~~~~~~~~~~~~------~~V~~v~~spdg~~la~gs~d-------------g~I~iwD~~~~~~~ 505 (755)
..+.+-..+.... .....+. -+++.+++|+.+ ..+.+||+.+.+-.
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGAGFAV--VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcceEEE--ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 8876544332211 1111222 366666665432 45888998876543
No 449
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.93 E-value=39 Score=39.30 Aligned_cols=193 Identities=12% Similarity=0.187 Sum_probs=96.6
Q ss_pred CEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-
Q 004410 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD- 465 (755)
Q Consensus 390 ~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~- 465 (755)
...++..+|.. .+. +.--.|+|+++ +|+.+..+. ....+-.+.|+. ...|++...+|++++|++-......
T Consensus 45 GpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~ 119 (829)
T KOG2280|consen 45 GPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESN 119 (829)
T ss_pred CceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhccc
Confidence 34455566644 222 34456888886 455554442 333788899984 6678888899999999986543322
Q ss_pred ---eccCCcceEEEEEccCCCeEEEEeCCCcEEEEE-CCCCeEeeeeeEEecccccCCCCCe--EEEEEcCCCCCEEEEE
Q 004410 466 ---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD-IKDNQLYQQNQICLQGKKKLPGKRI--TGFQFSPSDPSKVIVT 539 (755)
Q Consensus 466 ---~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD-~~~~~~~~~~~~~~~~~~~~~~~~I--~~v~fsp~d~~~l~s~ 539 (755)
.......|..+.+..+ .+++-+.+|.+.+-+ .....+... ...+.... ++-...+.+......-
T Consensus 120 svg~e~~~~~I~ec~~f~~--GVavlt~~g~v~~i~~~~~~~~~~~--------~diP~~~~~~~~Wt~~~~~~~~~~ll 189 (829)
T KOG2280|consen 120 SVGFESQMSDIVECRFFHN--GVAVLTVSGQVILINGVEEPKLRKM--------PDIPYNELPKSCWTVFQPHRQSTILL 189 (829)
T ss_pred ccccccccCceeEEEEecC--ceEEEecCCcEEEEcCCCcchhhhC--------CCCCCccCCCcceeEecCCCcceeEE
Confidence 1112223443444333 455556666655443 322221110 00011111 2222222111111100
Q ss_pred ECCCc--EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSL--VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~--I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.-+-. ..++............ ......+..+..||+.++|+--..+|.|.+-..+..+
T Consensus 190 ~v~~~v~~~~~q~~~~~~q~~~~-~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 190 DVDVAVGLHICQVEESRVQLHAL-SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred eechhhhhcccceeccccccccc-CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 00100 0111111111111110 1123567889999999999999999999998887665
No 450
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.88 E-value=47 Score=35.28 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=54.8
Q ss_pred eEEEEeCC-----CcEEEEeCCCCeEE---EEEe---cCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEEcCCCeEE
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDRCL---RVFS---HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVV 464 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~~~---~~~~---h~~~V~~i~fsp~d~~~l~sgs~D-----g~V~iwdl~~~~~~ 464 (755)
.++.|+.+ ..+..+|+.+.+.. ..+. ....-.+++.. ++.+++.|+.. ..+..||+.+.+-.
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 55556543 35677777766531 2221 11111222222 56777777742 35888898876544
Q ss_pred EeccCC--cceEEEEEccCCCeEEEEeCCCc----EEEEECCCCeE
Q 004410 465 DYTDIR--EIVSAVCYCPDGKGGIVGTMTGN----CRFYDIKDNQL 504 (755)
Q Consensus 465 ~~~~~~--~~V~~v~~spdg~~la~gs~dg~----I~iwD~~~~~~ 504 (755)
...... ......+...+++..+.|+.++. +.+||+.+++-
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 433211 12222333446777888876643 56888887654
No 451
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=84.85 E-value=54 Score=34.30 Aligned_cols=169 Identities=11% Similarity=0.192 Sum_probs=91.8
Q ss_pred cEEEEeCCCCeEEEEEe-------cCCcEEEEEEeeCCC----CE-EEEEeCCCcEEEEEcCCCeEEEeccCC-------
Q 004410 410 TVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDD----NY-FISGSIDGKVRIWEVRRCQVVDYTDIR------- 470 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~-------h~~~V~~i~fsp~d~----~~-l~sgs~Dg~V~iwdl~~~~~~~~~~~~------- 470 (755)
+|.+||+.+++.++.+. ....+..+.+...++ .+ +++=+..+-|.|+|+.+++......+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 68899999999988884 356788898887332 23 344444568999999987765433221
Q ss_pred -------------cceEEEEEcc---CCCeEEEEeCCCcEEEEECCCC-----eEeeee----eEEecccccCCCCCeEE
Q 004410 471 -------------EIVSAVCYCP---DGKGGIVGTMTGNCRFYDIKDN-----QLYQQN----QICLQGKKKLPGKRITG 525 (755)
Q Consensus 471 -------------~~V~~v~~sp---dg~~la~gs~dg~I~iwD~~~~-----~~~~~~----~~~~~~~~~~~~~~I~~ 525 (755)
..+..++.+| +|+.|.-....+. ++|.+.+. ...... .+...+. ......+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence 2244455544 4444444433321 22222211 110000 0001111 1135567
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCcce----eeEEEeeeccCCceEEEEEec--CCCEEEEE
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGENVV----GKFKASAFRVAGSQMFATFTS--DGKHVVSP 583 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~----~~~~~~~~~~~~~v~~l~fsp--dg~~L~sg 583 (755)
+++.+ ++.++++--..+.|..|+..... ..........-..+..+.+.+ +|.+.+..
T Consensus 191 ~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 88888 88888898999999999987622 111111112234678888888 66655554
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.64 E-value=11 Score=41.54 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=57.0
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEEC---------CCCeEeeeeeEE-ecc--cccCCCCCeEEEEEcCCC--CCEEE
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDI---------KDNQLYQQNQIC-LQG--KKKLPGKRITGFQFSPSD--PSKVI 537 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~---------~~~~~~~~~~~~-~~~--~~~~~~~~I~~v~fsp~d--~~~l~ 537 (755)
.|..+..++.|..++..+.+|.+.++=. .+++........ +.. ......-.+..++|+|+. ...++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4778899999999999999998777642 233322211111 111 111233456678999965 67899
Q ss_pred EEECCCcEEEEECCcceeeE
Q 004410 538 VTSADSLVRVLCGENVVGKF 557 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~~~~~~ 557 (755)
+-+.|..||||+.......+
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 99999999999977654433
No 453
>PRK13684 Ycf48-like protein; Provisional
Probab=84.19 E-value=64 Score=34.59 Aligned_cols=186 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
+.....+..++.+......+--|-.+....+.... .+.+.++.+.|++.+++++..-..++.++-.....
T Consensus 137 i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~--------~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW-- 206 (334)
T PRK13684 137 ITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA--------AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAW-- 206 (334)
T ss_pred EEEECCCcceeeeccceEEEECCCCCCceeCcCCC--------cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeE--
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
......-...++++.+.+++
T Consensus 207 ------------------------------------------------------------~~~~~~~~~~l~~i~~~~~g 226 (334)
T PRK13684 207 ------------------------------------------------------------TPHQRNSSRRLQSMGFQPDG 226 (334)
T ss_pred ------------------------------------------------------------EEeeCCCcccceeeeEcCCC
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecC-----CcEEEEEEeeCCCCEEEEEeCCCcEEEEE-cCCCeEEEe-ccCCcce
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHN-----NYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRCQVVDY-TDIREIV 473 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~-----~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd-l~~~~~~~~-~~~~~~V 473 (755)
.++..+..|.+++=....+..-...... ..+..+.+.| ++..+++|.....++--| -.+-+.+.. .......
T Consensus 227 ~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~ 305 (334)
T PRK13684 227 NLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNF 305 (334)
T ss_pred CEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcce
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEE
Q 004410 474 SAVCYCPDGKGGIVGTMTGNCRFYD 498 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~dg~I~iwD 498 (755)
..+.|..+++.+++|. .|.|..|+
T Consensus 306 ~~~~~~~~~~~~~~G~-~G~il~~~ 329 (334)
T PRK13684 306 YKIVFLDPEKGFVLGQ-RGVLLRYV 329 (334)
T ss_pred EEEEEeCCCceEEECC-CceEEEec
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=83.57 E-value=20 Score=32.55 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=68.2
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee---eeEEecccccCCCCCeEEEEE---cCCCCCEEEEEECCCcEEE
Q 004410 474 SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ---NQICLQGKKKLPGKRITGFQF---SPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~---~~~~~~~~~~~~~~~I~~v~f---sp~d~~~l~s~s~Dg~I~i 547 (755)
..-.|......|++++..|+|.|++......... ..+.+. .-...|++++- .|.+..-++.-+....+..
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L----Nin~~italaaG~l~~~~~~D~LliGt~t~lla 77 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL----NINQEITALAAGRLKPDDGRDCLLIGTQTSLLA 77 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE----ECCCceEEEEEEecCCCCCcCEEEEeccceEEE
Confidence 3446766777899999999999998875432211 001011 12346677654 4344555555566778999
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEec----CCCEEEEEeCCCcEEEEEcCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTS----DGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fsp----dg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
||..+....|.. .....+.++.+.. +..+++.| .+..|.-||....
T Consensus 78 YDV~~N~d~Fyk---e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~ 127 (136)
T PF14781_consen 78 YDVENNSDLFYK---EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN 127 (136)
T ss_pred EEcccCchhhhh---hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence 998876665543 2345666666532 23444444 4456666665543
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=82.42 E-value=54 Score=32.42 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=69.6
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEeCC--CCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC------cEEEE-EcCC--
Q 004410 392 LDLSWSKNGFLLSSSADKTVRLWQVG--IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG------KVRIW-EVRR-- 460 (755)
Q Consensus 392 ~~l~~s~~~~L~s~s~Dg~V~iWdl~--s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg------~V~iw-dl~~-- 460 (755)
..++-...+.|+.+...+.|.+|++. ..+.+..|..-+.|..+.++. .|+|+++--.+. .+|+| +.+.
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 33444443444444666789999988 445667777779999999999 899999854332 56665 2211
Q ss_pred --CeEE--Ee---------------------ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 461 --CQVV--DY---------------------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 461 --~~~~--~~---------------------~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
.+.+ .. ......+.+++-.|-.-.|++|+ ++++.+|.+.....
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 1111 11 12245678888888544566655 56788887765443
No 456
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=81.71 E-value=81 Score=37.99 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=48.2
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEE-----------------eeeccCCceEEEEEecCCCEEEEE
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKA-----------------SAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~-----------------~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
+.|.+++... -+..++.+-.||.|.++|-.+....... ..+.....+..++|||.+.-++.-
T Consensus 260 ~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 4577777666 6678999999999999996654221111 001122244568999999999999
Q ss_pred eCCCcEE
Q 004410 584 SEDSNIY 590 (755)
Q Consensus 584 s~Dg~I~ 590 (755)
..||.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999966
No 457
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.47 E-value=42 Score=37.48 Aligned_cols=116 Identities=13% Similarity=0.040 Sum_probs=62.3
Q ss_pred CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc-CCCCCeEEEEEcCCC-----CCEEEEEE-C
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK-LPGKRITGFQFSPSD-----PSKVIVTS-A 541 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~-~~~~~I~~v~fsp~d-----~~~l~s~s-~ 541 (755)
.-.....|+|.|||..|++--..|.|++++..++...... .+..... .....+.+|+++|+- ..+|.+.. .
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~--~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVF--TLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeee--cCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 3456788999999976666444699999987654322111 1111111 135778999999842 12444442 1
Q ss_pred ---------CCcEEEEECCc-------ceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 542 ---------DSLVRVLCGEN-------VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 542 ---------Dg~I~iwd~~~-------~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
...|.-|.... ....+..........-..+.|.|||.++++.++.
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 22343344321 1111111101111234567899999877766654
No 458
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=81.26 E-value=1.4e+02 Score=36.25 Aligned_cols=110 Identities=12% Similarity=0.121 Sum_probs=71.6
Q ss_pred CCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCe-----EEEEE-ecCCc----------EEEEEEeeCCCCEEEEEeCC
Q 004410 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-----CLRVF-SHNNY----------VTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 389 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~-----~~~~~-~h~~~----------V~~i~fsp~d~~~l~sgs~D 450 (755)
.+..+++|+|.. .||.....|...||++.... .+... .+.+. -..|.|.+ +.+.|+.++ .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-R 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-C
Confidence 467789999976 99999999999999992111 11111 12222 34677877 666666655 4
Q ss_pred CcEEEEEcCCCeEE---EeccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCC
Q 004410 451 GKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 451 g~V~iwdl~~~~~~---~~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~ 501 (755)
..+.++|+.+.... ........|..+.-+|.. .++++-+ ...|...++..
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 67888999877553 233445678888888862 2333333 36777778776
No 459
>PHA02790 Kelch-like protein; Provisional
Probab=81.21 E-value=1e+02 Score=34.88 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=52.5
Q ss_pred eEEEEeCC--CcEEEEeCCCCeEEEEEecCCcE--EEEEEeeCCCCEEEEEeCCC---cEEEEEcCCCeEEEeccCCcce
Q 004410 401 FLLSSSAD--KTVRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQVVDYTDIREIV 473 (755)
Q Consensus 401 ~L~s~s~D--g~V~iWdl~s~~~~~~~~h~~~V--~~i~fsp~d~~~l~sgs~Dg---~V~iwdl~~~~~~~~~~~~~~V 473 (755)
..+.|+.+ ..+..||..+++....-.-.... .+++. .++.+.+.|+.++ .+..||..+.+-........+.
T Consensus 321 iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 44555543 45788887766544332211111 12222 2678888888654 4778888776544322221111
Q ss_pred E-EEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 474 S-AVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 474 ~-~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
. ..+..-+|+..++| |.+.+||..+++-
T Consensus 399 ~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W 427 (480)
T PHA02790 399 YKSCALVFGRRLFLVG---RNAEFYCESSNTW 427 (480)
T ss_pred ccceEEEECCEEEEEC---CceEEecCCCCcE
Confidence 1 11122366666666 4578899877654
No 460
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=81.04 E-value=82 Score=33.61 Aligned_cols=148 Identities=13% Similarity=0.213 Sum_probs=86.1
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCc------EEEEeCCC--C--eEEEEE-----e-cCC--------cEEEEEEeeCCCC
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKT------VRLWQVGI--D--RCLRVF-----S-HNN--------YVTSVAFNPVDDN 442 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~------V~iWdl~s--~--~~~~~~-----~-h~~--------~V~~i~fsp~d~~ 442 (755)
-+.+..|.+.+++ .+++.+.++. +..+++.. + ..+... . ..+ ..-+|++.+ ++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 4567788998644 8888888888 66666543 1 111111 1 111 344788855 888
Q ss_pred EEEEEeCC------CcEEEEEcCCCeEEE-e---------------ccCCcceEEEEEccCCCeEEEEeCCC--------
Q 004410 443 YFISGSID------GKVRIWEVRRCQVVD-Y---------------TDIREIVSAVCYCPDGKGGIVGTMTG-------- 492 (755)
Q Consensus 443 ~l~sgs~D------g~V~iwdl~~~~~~~-~---------------~~~~~~V~~v~~spdg~~la~gs~dg-------- 492 (755)
++++.-.+ ..|+.++.. ++... + ........+++++|+|+.|+++....
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887667 778888876 43321 1 12334588999999999776654422
Q ss_pred --------cEEEEECCC-CeEeeeeeEEeccc-ccCCCCCeEEEEEcCCCCCEEEE
Q 004410 493 --------NCRFYDIKD-NQLYQQNQICLQGK-KKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 493 --------~I~iwD~~~-~~~~~~~~~~~~~~-~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
.|..||..+ +.....+.+.+... .......|+.+.+.+ ++++++.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEEE
Confidence 133455554 32333333322210 001456788899988 6665554
No 461
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=80.86 E-value=19 Score=39.64 Aligned_cols=137 Identities=13% Similarity=0.157 Sum_probs=81.1
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeC------CCCEEEEEeCCCcEEEEEcCC-CeEEEecc-----
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRR-CQVVDYTD----- 468 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~------d~~~l~sgs~Dg~V~iwdl~~-~~~~~~~~----- 468 (755)
.+..+.....++-.|++.|+.+..+.....| -++|.|. ....-+.|-.+..|.-.|.+- +..+....
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 4556677778888899999999998755555 6788872 112233444455555556543 22111111
Q ss_pred CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
.+....+..-. ..-++|+|+..|.|++||--.-.... ..+.-+..|..+..+. ++.++++++. ..+.+.
T Consensus 561 tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKt--------alP~lG~aIk~idvta-~Gk~ilaTCk-~yllL~ 629 (776)
T COG5167 561 TKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKT--------ALPGLGDAIKHIDVTA-NGKHILATCK-NYLLLT 629 (776)
T ss_pred ccccccccccc-cCceEEEecCCCceeeehhhcchhhh--------cCcccccceeeeEeec-CCcEEEEeec-ceEEEE
Confidence 12223333333 33489999999999999965433211 1223456788888888 7777766654 344444
Q ss_pred E
Q 004410 549 C 549 (755)
Q Consensus 549 d 549 (755)
|
T Consensus 630 d 630 (776)
T COG5167 630 D 630 (776)
T ss_pred e
Confidence 4
No 462
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=80.65 E-value=1.4e+02 Score=36.02 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=50.2
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec----cCC----------------cceEEEEEccCCCeEE
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DIR----------------EIVSAVCYCPDGKGGI 486 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~----~~~----------------~~V~~v~~spdg~~la 486 (755)
....|.+|+... -+.+++....||+|.++|-.+-+.+... ... ..+..++|+|.+..++
T Consensus 258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 456688888776 7778999999999999998776444222 111 1344578999999999
Q ss_pred EEeCCCcEE
Q 004410 487 VGTMTGNCR 495 (755)
Q Consensus 487 ~gs~dg~I~ 495 (755)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 999999865
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.64 E-value=26 Score=43.28 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=23.3
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 574 TSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 574 spdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.++..++++..||.+..||++.+.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCc
Confidence 7889999999999999999999975
No 464
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=79.75 E-value=1.5e+02 Score=36.00 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=33.3
Q ss_pred cccEEEEEEecCC------CEEEEEcCCCcEEEEEccCCeeeeeeecC
Q 004410 284 EGSILTMKFSLDG------QYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 284 ~~~V~~l~fspdg------~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
+..|.|+++.++. ++|+.|+.|+++++..+.-...+..+...
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence 4578899998865 68999999999999999866666555443
No 465
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=79.44 E-value=94 Score=33.31 Aligned_cols=41 Identities=7% Similarity=-0.073 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCeEEEeccCCc--ceEEEEEccCCCeEEEEeCC
Q 004410 451 GKVRIWEVRRCQVVDYTDIRE--IVSAVCYCPDGKGGIVGTMT 491 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~~~~--~V~~v~~spdg~~la~gs~d 491 (755)
..|.+||..+.+-........ ........-++++.++|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 458889988765443322221 11122223467777777653
No 466
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.55 E-value=1.1e+02 Score=33.65 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=78.2
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe-EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
...+..++ ++.+++.+..-..++-||--... ..........++++.+.+++..++++ ..|.+.. ....+.......
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 34445555 66666655443333334433221 11223335568999999998877765 5566443 333332110000
Q ss_pred EEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe--eeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 510 ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS--AFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 510 ~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
.... ........++.+.|.+ ++. +++++..|.+....-.- ..+... ........+.+.|.++++-+++ +.+|
T Consensus 318 f~~~-~~~~~~~~l~~v~~~~-d~~-~~a~G~~G~v~~s~D~G--~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G 391 (398)
T PLN00033 318 FEEA-DIKSRGFGILDVGYRS-KKE-AWAAGGSGILLRSTDGG--KSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDG 391 (398)
T ss_pred eeec-ccCCCCcceEEEEEcC-CCc-EEEEECCCcEEEeCCCC--cceeEccccCCCCcceeEEEEcCCCceEEE-eCCc
Confidence 0000 0111234588899886 544 55666677766654221 222211 1233457788999777665554 5677
Q ss_pred cEEEE
Q 004410 588 NIYIW 592 (755)
Q Consensus 588 ~I~iW 592 (755)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77655
No 467
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.89 E-value=93 Score=36.34 Aligned_cols=96 Identities=20% Similarity=0.179 Sum_probs=54.9
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
.+.+..+..+|+. +|+--...|.|.+-+++..+++..+. .......++|.- ++ -++.+.+..|.+..-....+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg-nd--aVvl~~e~~l~lvgp~gd~V~ 292 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG-ND--AVVLSWEVNLMLVGPPGDSVQ 292 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec-CC--ceEEEEeeeEEEEcCCCCccc
Confidence 4567888999888 88888899999999888887777765 233333566654 22 222222333333333333333
Q ss_pred EeccCCcceEEEEEccCCCeEEEEe
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGT 489 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs 489 (755)
.+.++.. + +.--+||-.|++.+
T Consensus 293 f~yd~t~-~--l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 293 FYYDETA-I--LSAEVDGVRIITST 314 (829)
T ss_pred cccCCCc-e--eeeccCeeEEeccc
Confidence 3333322 2 44445666666544
No 468
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=76.37 E-value=0.37 Score=52.16 Aligned_cols=95 Identities=13% Similarity=0.276 Sum_probs=68.7
Q ss_pred CCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEE-Ee--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRV-FS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 389 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~-~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
+...+++|..++ .++.+-..+.+.+||+.+...... ++ +.... +.|++ ....++.+...|.+.|++..+.+.
T Consensus 75 g~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~ 151 (615)
T KOG2247|consen 75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRR 151 (615)
T ss_pred hhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhh
Confidence 445667888777 556677789999999976533221 11 33333 67888 777888888999999999988776
Q ss_pred EEecc-CCcceEEEEEccCCCeEE
Q 004410 464 VDYTD-IREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 464 ~~~~~-~~~~V~~v~~spdg~~la 486 (755)
.-..+ |...++++++.+.+..+.
T Consensus 152 iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 152 IIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred hhhhcccccceeEEEecccceeee
Confidence 65455 888999999999765443
No 469
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=75.44 E-value=1.3e+02 Score=36.40 Aligned_cols=128 Identities=12% Similarity=0.125 Sum_probs=77.1
Q ss_pred cCCcceEEEEEc---c----CCCeEEEEeCCCcEEEEECCCCeE----------eeeeeEEecccccCCCCCeEEEEEcC
Q 004410 468 DIREIVSAVCYC---P----DGKGGIVGTMTGNCRFYDIKDNQL----------YQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 468 ~~~~~V~~v~~s---p----dg~~la~gs~dg~I~iwD~~~~~~----------~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
....+|..|+|. . ...+|++-. ...+.|+...-.+. +....+..-......+....+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 566778888887 2 223555544 45566666221111 11111111112234567888999999
Q ss_pred CCCCEEEEEECCCcEEEEECCc----ceeeEEEeeeccCCc----------eEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 531 SDPSKVIVTSADSLVRVLCGEN----VVGKFKASAFRVAGS----------QMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 531 ~d~~~l~s~s~Dg~I~iwd~~~----~~~~~~~~~~~~~~~----------v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
.+...+|+....|...||++.. ........ ....+. -..+.|.++-..|+.++. ..+.++|+.+
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~-~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLS-RNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeec-cCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCC
Confidence 8889999999999999999821 11111111 111122 236789888888887765 5889999987
Q ss_pred CC
Q 004410 597 QD 598 (755)
Q Consensus 597 ~~ 598 (755)
..
T Consensus 234 ~~ 235 (765)
T PF10214_consen 234 NW 235 (765)
T ss_pred CC
Confidence 75
No 470
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=74.73 E-value=10 Score=43.77 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=46.3
Q ss_pred CCCCeeEEeeCCCeEEEEECCC---Ccccccccc-c----ceeee-----------cccccEEEEEEec----CCCEEEE
Q 004410 245 PGDHELTLGQRMRRVRVHPVKK---QSRELSSLY-T----GQEFL-----------AHEGSILTMKFSL----DGQYLAS 301 (755)
Q Consensus 245 pdg~~lasgs~dg~V~Vw~~~~---~~~~~~~~~-~----~~~l~-----------~H~~~V~~l~fsp----dg~~LaS 301 (755)
++...++.+..||.+....... ......... . .+.+. .-.+.+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666778888888877776543 111111000 0 00011 1124456666666 6789999
Q ss_pred EcCCCcEEEEEccCCeeeeeeecC
Q 004410 302 GGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 302 gs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
.+.|+++|+||+.++.++......
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEETT
T ss_pred EeCCCeEEEEECCCCeEEEEeccc
Confidence 999999999999999987776544
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.62 E-value=84 Score=39.07 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=51.9
Q ss_pred CCCCEEEEEEcCCCeEEEEeCCCcEEEEeCC----CC----eEE-----------------EEE-ecCCcEEEEEEeeCC
Q 004410 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVG----ID----RCL-----------------RVF-SHNNYVTSVAFNPVD 440 (755)
Q Consensus 387 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~----s~----~~~-----------------~~~-~h~~~V~~i~fsp~d 440 (755)
....|.|+....+|.+..++.|| .||.+. .+ +|- ... .+.++|..|.+.. .
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-S 253 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-c
Confidence 35578899988888777788888 455431 11 111 111 2567999999987 8
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 004410 441 DNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 441 ~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.+.+.+-+..|+|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88999999999999999976
No 472
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=74.49 E-value=2.1e+02 Score=34.89 Aligned_cols=175 Identities=16% Similarity=0.208 Sum_probs=101.8
Q ss_pred cEEEEeCCCCeEEEEEecC-----CcEEEEEEeeCCCC-EEEEEe-----------CCCcEEEEEcC-CCe---EEEecc
Q 004410 410 TVRLWQVGIDRCLRVFSHN-----NYVTSVAFNPVDDN-YFISGS-----------IDGKVRIWEVR-RCQ---VVDYTD 468 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~-----~~V~~i~fsp~d~~-~l~sgs-----------~Dg~V~iwdl~-~~~---~~~~~~ 468 (755)
.|++.|..+++.+..+.+. -.|..+.|+..+.. ++++|. .+|.++.|++- .++ .+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 4888888888877776533 23666777663333 333333 23446666653 333 223333
Q ss_pred CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
....|.+ ..|-..++++ +....+++||+-..+++..... +.-...|+.+++. ...+++|...-.|.++
T Consensus 934 ~~~~v~A--i~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~------k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen 934 IPGPVGA--ICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCEL------KFIPNRISSIQTY---GARIVVGDIQESVHFV 1001 (1205)
T ss_pred CCccceE--EeccCCEEEE-ecccEEEEeeCChHHHHhhhhh------ccCceEEEEEeec---ceEEEEeeccceEEEE
Confidence 4445544 4555555555 4456899999988777654322 1234578888874 4778888776666665
Q ss_pred ECCcceeeEEE-eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 549 CGENVVGKFKA-SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 549 d~~~~~~~~~~-~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
..+....++.. .-......|+.+.+ -|...+|.|..=|.+.+-.+...
T Consensus 1002 ~y~~~~n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1002 RYRREDNQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred EEecCCCeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECCCc
Confidence 54432222222 11223345565555 35667888888888888877544
No 473
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=73.99 E-value=1.4e+02 Score=32.44 Aligned_cols=191 Identities=14% Similarity=0.092 Sum_probs=101.3
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEEEEEecC---CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc--c
Q 004410 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE--I 472 (755)
Q Consensus 398 ~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~---~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~--~ 472 (755)
-++.+..+..+|.|.-.|..++..+-..... ..+..-.+.. +++ ++.++.++.++.+|.++++.+-...... .
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 3456666678888888888888765433322 2333333333 444 7778889999999998887774333333 1
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC--CCcEEEEEC
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA--DSLVRVLCG 550 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~--Dg~I~iwd~ 550 (755)
+..-..-.++ .+..++.+|.+...|..++....................+ . ....++.+.. ++.+.-.|.
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~------~-~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA------I-ASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce------e-ecceEEEecCCCcceEEEEEc
Confidence 2222222233 4444457899999999988886654332100000011111 1 2344555554 555655666
Q ss_pred CcceeeEEEee---eccCC-----ceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 551 ENVVGKFKASA---FRVAG-----SQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 551 ~~~~~~~~~~~---~~~~~-----~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.+......... ..... .+..-...-+ .-+..++.++.+...|..+++.
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~ 272 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGEL 272 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCce
Confidence 55444443211 11110 0000011112 2245677788888888888873
No 474
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=73.70 E-value=1.5e+02 Score=32.69 Aligned_cols=146 Identities=10% Similarity=0.092 Sum_probs=78.9
Q ss_pred EEEEEEcCCCeEEEEeCCCcEE-EEeCCCCe-EEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe-----E
Q 004410 391 VLDLSWSKNGFLLSSSADKTVR-LWQVGIDR-CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-----V 463 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s~Dg~V~-iWdl~s~~-~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-----~ 463 (755)
...+..++++.++..+..|.+. -||-.... ..........++.+.+.+ ++.+++++ .+|.+.+ ....++ .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 4456667788555555555543 34432221 122233556789999988 77777665 4565443 333332 1
Q ss_pred EE---eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 464 VD---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 464 ~~---~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
.. .......++++.|.+++..+++ +..|.+..-. ..++.-.... ....-...++.+.|.+ + ....+.+
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~-----~~~~~~~~ly~v~f~~-~-~~g~~~G 388 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDK-----GADNIAANLYSVKFFD-D-KKGFVLG 388 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEcc-----ccCCCCcceeEEEEcC-C-CceEEEe
Confidence 11 1112245889999988776655 4567665553 3333322100 0011134677888865 3 4556666
Q ss_pred CCCcEEEE
Q 004410 541 ADSLVRVL 548 (755)
Q Consensus 541 ~Dg~I~iw 548 (755)
.+|.|.-|
T Consensus 389 ~~G~il~~ 396 (398)
T PLN00033 389 NDGVLLRY 396 (398)
T ss_pred CCcEEEEe
Confidence 77776554
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.10 E-value=33 Score=39.54 Aligned_cols=79 Identities=11% Similarity=0.205 Sum_probs=53.7
Q ss_pred CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEE
Q 004410 419 DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (755)
Q Consensus 419 ~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD 498 (755)
..|.+..+....+++++-+| .+.-|+.+..||.|++|+.........-....+-..+.|... .|++.+.|..+.-|.
T Consensus 5 ~~~s~~~k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnh--gl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 5 FDCSRDPKEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNH--GLVTATSDRRALAWK 81 (1636)
T ss_pred ccccCCccccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeecc--ceEEEeccchhheee
Confidence 34444444567789999999 999999999999999999876554333333344445566444 466667777777775
Q ss_pred CC
Q 004410 499 IK 500 (755)
Q Consensus 499 ~~ 500 (755)
-.
T Consensus 82 ~d 83 (1636)
T KOG3616|consen 82 ED 83 (1636)
T ss_pred cc
Confidence 43
No 476
>PRK13613 lipoprotein LpqB; Provisional
Probab=72.47 E-value=2e+02 Score=33.60 Aligned_cols=195 Identities=12% Similarity=0.049 Sum_probs=94.7
Q ss_pred cCCCC-CEEEEEEcCCC-eEEEEeCCC-cEEEEeCCCCeE----EEEEecCCcEEEEEEeeCCCCEEEEEeC--CC--cE
Q 004410 385 QGHSS-EVLDLSWSKNG-FLLSSSADK-TVRLWQVGIDRC----LRVFSHNNYVTSVAFNPVDDNYFISGSI--DG--KV 453 (755)
Q Consensus 385 ~gh~~-~V~~l~~s~~~-~L~s~s~Dg-~V~iWdl~s~~~----~~~~~h~~~V~~i~fsp~d~~~l~sgs~--Dg--~V 453 (755)
.++.. .+..++.++++ .++....++ .+++..+..+.. ....-....++.-.|.+ ++ .+.+... ++ .+
T Consensus 358 ~g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl 435 (599)
T PRK13613 358 LGSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDG-RG-DLWVVDRDPADPRLL 435 (599)
T ss_pred cCCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcC-CC-CEEEecCCCCCceEE
Confidence 34434 67788899988 666555544 455555433322 11111233456666666 44 3333311 22 25
Q ss_pred EEEEcCCCeEE--EeccCCc-ceEEEEEccCCCeEEEEeC---CCcEEEEECC---CCeEeeeeeEEecccccCCCCCeE
Q 004410 454 RIWEVRRCQVV--DYTDIRE-IVSAVCYCPDGKGGIVGTM---TGNCRFYDIK---DNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 454 ~iwdl~~~~~~--~~~~~~~-~V~~v~~spdg~~la~gs~---dg~I~iwD~~---~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
++..- +++.. ......+ .|+.+..++||-.++.-.. .++|+|--+. .+.........+ ......+.
T Consensus 436 ~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l----~~~l~~v~ 510 (599)
T PRK13613 436 WLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSL----APELEDVT 510 (599)
T ss_pred EEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEe----ccCCCccc
Confidence 55543 33332 2223333 7999999999998877543 2455544332 332111111111 11223589
Q ss_pred EEEEcCCCCCEEEEEE-CCCcEEEEE--CCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEeCCCcE
Q 004410 525 GFQFSPSDPSKVIVTS-ADSLVRVLC--GENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPSEDSNI 589 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s-~Dg~I~iwd--~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs~Dg~I 589 (755)
++.|.. +..+++.+. .++...+|- +.-....... ...-..+..++-..+.. .|+.+..++.|
T Consensus 511 ~~~W~~-~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~--~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 511 DMSWAG-DSQLVVLGREEGGVQQARYVQVDGSTPPASA--PAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred eeEEcC-CCEEEEEeccCCCCcceEEEecCCcCccccc--ccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 999998 666666453 333444443 3221111101 12233455556655555 44443555554
No 477
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=72.27 E-value=29 Score=33.26 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=25.1
Q ss_pred CCEEEEEEcCCC-------eEEEEeCCCcEEEEeCCC
Q 004410 389 SEVLDLSWSKNG-------FLLSSSADKTVRLWQVGI 418 (755)
Q Consensus 389 ~~V~~l~~s~~~-------~L~s~s~Dg~V~iWdl~s 418 (755)
..|..++|||.| .|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 688899999999998653
No 478
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=72.19 E-value=74 Score=35.57 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=38.1
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE---Ee----c-cCCcceEEEEEccCC
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DY----T-DIREIVSAVCYCPDG 482 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~---~~----~-~~~~~V~~v~~spdg 482 (755)
.-...+.|+|.| ++++|++--..|.|++++..++... .+ . ........|+++|+-
T Consensus 28 GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345678899999 8887777655799999986654321 11 1 135668899999874
No 479
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.99 E-value=1.7e+02 Score=32.76 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=27.3
Q ss_pred CEEEEEEcCCC----eEEEEeCCCcEEEEeCCCCeEE
Q 004410 390 EVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCL 422 (755)
Q Consensus 390 ~V~~l~~s~~~----~L~s~s~Dg~V~iWdl~s~~~~ 422 (755)
.+..++|+|+. .|+.-+.|.+||+||+.....+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 46678899975 7888899999999999876655
No 480
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=71.28 E-value=1.6e+02 Score=32.05 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=43.3
Q ss_pred eEEEEeCCCcEEEEeCCC--CeEEEE--EecCCcEEEEEEeeCCCCEEEEEeCCC-----------cEEEEEcCCCeEEE
Q 004410 401 FLLSSSADKTVRLWQVGI--DRCLRV--FSHNNYVTSVAFNPVDDNYFISGSIDG-----------KVRIWEVRRCQVVD 465 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s--~~~~~~--~~h~~~V~~i~fsp~d~~~l~sgs~Dg-----------~V~iwdl~~~~~~~ 465 (755)
+++.|..+..+.++|+.. ++.... +............- ++.+++.|+.+. .+..||..+.+-..
T Consensus 42 yv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~-~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~ 120 (376)
T PRK14131 42 YVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFI-DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQK 120 (376)
T ss_pred EEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEE-CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEe
Confidence 444444455677788753 222221 11111111112222 567777777542 47788888766544
Q ss_pred eccC-CcceE-EEEEc-cCCCeEEEEeCC
Q 004410 466 YTDI-REIVS-AVCYC-PDGKGGIVGTMT 491 (755)
Q Consensus 466 ~~~~-~~~V~-~v~~s-pdg~~la~gs~d 491 (755)
.... ..... ..+.. -+++..+.|+.+
T Consensus 121 ~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 121 LDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 3321 11111 12222 467777887754
No 481
>PLN02193 nitrile-specifier protein
Probab=70.02 E-value=2e+02 Score=32.54 Aligned_cols=101 Identities=11% Similarity=0.153 Sum_probs=55.8
Q ss_pred eEEEEeCC-----CcEEEEeCCCCeEEEEEec-----CCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEEcCCCeEEE
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDRCLRVFSH-----NNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVD 465 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~~~~~~~h-----~~~V~~i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~~~~~ 465 (755)
.++.|+.+ ..+.+||+.+.+....-.. ...-.+++. - ++.+++.|+.++ .+..||+.+.+-..
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-D-EENVYVFGGVSATARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-E-CCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence 44555543 4588889888765543211 111122222 2 567777777653 46778887765443
Q ss_pred eccC------CcceEEEEEccCCCeEEEEeCC----CcEEEEECCCCeEe
Q 004410 466 YTDI------REIVSAVCYCPDGKGGIVGTMT----GNCRFYDIKDNQLY 505 (755)
Q Consensus 466 ~~~~------~~~V~~v~~spdg~~la~gs~d----g~I~iwD~~~~~~~ 505 (755)
.... ......+. -+++.+++++.+ ..+.+||+.+.+-.
T Consensus 309 ~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 309 CSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred CCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 2211 11112222 367777777765 45899999887643
No 482
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=69.85 E-value=2.9e+02 Score=34.41 Aligned_cols=220 Identities=11% Similarity=0.153 Sum_probs=0.0
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-------eEEEEe---------CCCcEEEEeC--------
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-------FLLSSS---------ADKTVRLWQV-------- 416 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-------~L~s~s---------~Dg~V~iWdl-------- 416 (755)
.....+....+..|....+.-..-..|--.+..+.....+ +|+.|. ..|.+.|+|+
T Consensus 1001 ~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg 1080 (1366)
T KOG1896|consen 1001 GEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG 1080 (1366)
T ss_pred cccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCC
Q ss_pred --CCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc-CCCeEEEeccCCcceEEEEEccCCCeEEEEeC
Q 004410 417 --GIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM 490 (755)
Q Consensus 417 --~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl-~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~ 490 (755)
.+...++.+. ..+.|..++ .-+=.+..+...+|.||++ +...++-..-..-.+.-....--.++|+.|.-
T Consensus 1081 kP~t~~KlKel~~eE~KGtVsavc----eV~G~l~~~~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV 1156 (1366)
T KOG1896|consen 1081 KPFTKNKLKELYIEEQKGTVSAVC----EVRGHLLSSQGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDV 1156 (1366)
T ss_pred CCcccceeeeeehhhcccceEEEE----EeccEEEEccCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhh
Q ss_pred CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC-EEEEEECCCcEEE----------EECCcceeeEEE
Q 004410 491 TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS-KVIVTSADSLVRV----------LCGENVVGKFKA 559 (755)
Q Consensus 491 dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~-~l~s~s~Dg~I~i----------wd~~~~~~~~~~ 559 (755)
-..|.+.-...........- +....-.++++.|.-++++ .++++..++.|++ |++.........
T Consensus 1157 ~ksisfl~fqeep~rlsL~s-----rd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv~radf 1231 (1366)
T KOG1896|consen 1157 MKSISFLGFQEEPYRLSLLS-----RDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESLSGQRLVRRADF 1231 (1366)
T ss_pred hhceEEEEEccCceEEEEee-----cCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCccccCcceeeeeeee
Q ss_pred eeeccCCceEEEE------EecCCCEEE--EEeCCCcE
Q 004410 560 SAFRVAGSQMFAT------FTSDGKHVV--SPSEDSNI 589 (755)
Q Consensus 560 ~~~~~~~~v~~l~------fspdg~~L~--sgs~Dg~I 589 (755)
+...|....+.+- |..+...+. .|..||.+
T Consensus 1232 hvg~~vs~m~~lp~~~~~e~~~~~~~~~~v~gtlDG~l 1269 (1366)
T KOG1896|consen 1232 HVGAHVSTMFRLPCHQNAEFGSNSPMFYEVFGTLDGGL 1269 (1366)
T ss_pred EeccceeeeEeccccccchhccCCchhhhhhcccCCce
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.80 E-value=35 Score=42.11 Aligned_cols=147 Identities=11% Similarity=0.166 Sum_probs=81.9
Q ss_pred eCCCcEEEEEcCCC-eEEEeccCCcceEEEE--------EccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc-ccc
Q 004410 448 SIDGKVRIWEVRRC-QVVDYTDIREIVSAVC--------YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG-KKK 517 (755)
Q Consensus 448 s~Dg~V~iwdl~~~-~~~~~~~~~~~V~~v~--------~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~-~~~ 517 (755)
+.|+.+.+|+..++ +...+.+....|..|. |-|.=+++++-..--.|.++-+.-........+...+ ...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 46899999999984 4445555556665554 3333345555555556666644322221111110011 112
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEE--EECCc-------------------ceeeEEEeeeccCCceEEEEEecC
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRV--LCGEN-------------------VVGKFKASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i--wd~~~-------------------~~~~~~~~~~~~~~~v~~l~fspd 576 (755)
..+..|+++.... +|+.+++ +.||.|+= |...+ ..+.+......+..+|..+++...
T Consensus 176 ~dg~~V~~I~~t~-nGRIF~~-G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTE-NGRIFFA-GRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEecc-CCcEEEe-ecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 2355678888443 5555554 55554332 11111 001111100245668999999888
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 004410 577 GKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 577 g~~L~sgs~Dg~I~iWd~~~ 596 (755)
-..+.+-++.|.|.+|++..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88999999999999999976
No 484
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=68.71 E-value=28 Score=37.87 Aligned_cols=165 Identities=9% Similarity=0.060 Sum_probs=93.6
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--EeccC-C----cceE-EEEEccCCCeEEEEeCCCcEEEE-
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDI-R----EIVS-AVCYCPDGKGGIVGTMTGNCRFY- 497 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~~-~----~~V~-~v~~spdg~~la~gs~dg~I~iw- 497 (755)
....|..+-..| +++.++.-+. ..+.++++.+.... ++... . ..|+ .+..-..|..+++++.||.|.-|
T Consensus 219 ~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 219 PFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 456678888899 8998877654 78889988765443 11111 1 1222 22223467788899999998776
Q ss_pred ECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC
Q 004410 498 DIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 498 D~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg 577 (755)
|.+.+....- ......+.....+..+.--. +.+-++.-...|++.++........... ..-..+.-+++||.+
T Consensus 297 dvr~~~~p~l---~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~---~~~~~~~~~~~Sp~~ 369 (733)
T COG4590 297 DVRRDGQPHL---NHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFE---RAYQAPQLVAMSPNQ 369 (733)
T ss_pred eeecCCCCcc---eeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehh---hhhcCcceeeeCccc
Confidence 5554322110 00001111112222221111 3345566667777777654432222221 122355678899999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCccc
Q 004410 578 KHVVSPSEDSNIYIWNYSNQDKSS 601 (755)
Q Consensus 578 ~~L~sgs~Dg~I~iWd~~~~~~~~ 601 (755)
.+|++-. .|.|+++.+++..+..
T Consensus 370 ~~Ll~e~-~gki~~~~l~Nr~Pei 392 (733)
T COG4590 370 AYLLSED-QGKIRLAQLENRNPEI 392 (733)
T ss_pred chheeec-CCceEEEEecCCCCCc
Confidence 9998754 4789999999877543
No 485
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.31 E-value=80 Score=34.63 Aligned_cols=114 Identities=13% Similarity=0.195 Sum_probs=73.2
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc--
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-- 458 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl-- 458 (755)
..++|.++.|++|+ .|+.--.+++|.+++....+....+. .+..|....|.. + .-++..+..| +-+|-.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEch
Confidence 45699999999999 88888899999999875544433332 345588888876 3 4454444333 444433
Q ss_pred CCCeEEEeccCCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCe
Q 004410 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQ 503 (755)
Q Consensus 459 ~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~ 503 (755)
...++.....+...|.-..|+++...++.++. .+++.=+.++++.
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 33344445566777888899998877665554 3333334444443
No 486
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=68.29 E-value=1.8e+02 Score=31.58 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=20.9
Q ss_pred cEEEEeCCCCeEEEEEec-CCcEE-EEEEeeCCCCEEEEEeCC
Q 004410 410 TVRLWQVGIDRCLRVFSH-NNYVT-SVAFNPVDDNYFISGSID 450 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h-~~~V~-~i~fsp~d~~~l~sgs~D 450 (755)
.+..||..+.+....-.. ..... ..+....++.+++.|+.+
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 477889887765443211 11111 111210267778888754
No 487
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=67.98 E-value=0.81 Score=49.66 Aligned_cols=143 Identities=13% Similarity=0.207 Sum_probs=95.4
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC-EEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~-~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
.......|-+.+ .++.++.+..|..||- .++.......++....++|.. +++ .++.+-..+.+.+||+.+....++
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDk-egdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDK-EGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhcc-ccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 334456677877 8888888899999985 444444455666677788887 554 455567789999999986543321
Q ss_pred cc-CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 467 TD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 467 ~~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.. ....-.-+.|++.+..++.|...|.+.||+..+.+... ....|..+++++++.+ . .+++.++.|.
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii--------v~Gkh~RRgtq~av~l-E-d~vil~dcd~ 180 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII--------VMGKHQRRGTQIAVTL-E-DYVILCDCDN 180 (615)
T ss_pred hccCcchHHHHhhccCCccccccccccceEEEeccchhhhh--------hhcccccceeEEEecc-c-ceeeecCcHH
Confidence 11 11111227899999999999999999999988765432 1222667889999987 3 3444444443
No 488
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=67.46 E-value=17 Score=41.96 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=41.4
Q ss_pred CCCEEEEEECCCcEEEEECCc---ceeeEEEeeec---------------------cCCceEEEEEec----CCCEEEEE
Q 004410 532 DPSKVIVTSADSLVRVLCGEN---VVGKFKASAFR---------------------VAGSQMFATFTS----DGKHVVSP 583 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd~~~---~~~~~~~~~~~---------------------~~~~v~~l~fsp----dg~~L~sg 583 (755)
++..++++..||.+....... ....+...... .......++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 567888888888887776543 11111110010 123445566666 77899999
Q ss_pred eCCCcEEEEEcCCCCc
Q 004410 584 SEDSNIYIWNYSNQDK 599 (755)
Q Consensus 584 s~Dg~I~iWd~~~~~~ 599 (755)
+.|+++++||+.+++.
T Consensus 237 ~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQC 252 (547)
T ss_dssp ETTSEEEEEETTTTCE
T ss_pred eCCCeEEEEECCCCeE
Confidence 9999999999999885
No 489
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=66.84 E-value=28 Score=33.36 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=25.5
Q ss_pred cEEEEEEecCC------CEEEEEcCCCcEEEEEccC
Q 004410 286 SILTMKFSLDG------QYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 286 ~V~~l~fspdg------~~LaSgs~Dg~I~vWdv~~ 315 (755)
.|..++|||-| -+||+.+.++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999954 4799999999999998653
No 490
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=64.51 E-value=2.5e+02 Score=31.76 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=60.4
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcc----eEEEEEccCCCeEEEEeC-------------CCcEEE
Q 004410 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI----VSAVCYCPDGKGGIVGTM-------------TGNCRF 496 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~----V~~v~~spdg~~la~gs~-------------dg~I~i 496 (755)
+...+ ++.+++... ..++.+|+....... ...... =..+...|+|++|+.+.. .-.|..
T Consensus 153 ~~~l~-nG~ll~~~~--~~~~e~D~~G~v~~~-~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ive 228 (477)
T PF05935_consen 153 FKQLP-NGNLLIGSG--NRLYEIDLLGKVIWE-YDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVE 228 (477)
T ss_dssp EEE-T-TS-EEEEEB--TEEEEE-TT--EEEE-EE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred eeEcC-CCCEEEecC--CceEEEcCCCCEEEe-eecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEE
Confidence 55556 777776554 788888887553332 222221 245678899999988872 223666
Q ss_pred EECCCCeEeeeeeEE--eccccc----------CC-------CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeE
Q 004410 497 YDIKDNQLYQQNQIC--LQGKKK----------LP-------GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF 557 (755)
Q Consensus 497 wD~~~~~~~~~~~~~--~~~~~~----------~~-------~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~ 557 (755)
+| .+|+.+...... +..... .. =-.++++.+.+.+..+|+++-..+.|...|..+....+
T Consensus 229 vd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 229 VD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp E--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred EC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 77 777766553321 100000 00 02488999999666666666666688888866554444
Q ss_pred E
Q 004410 558 K 558 (755)
Q Consensus 558 ~ 558 (755)
.
T Consensus 308 i 308 (477)
T PF05935_consen 308 I 308 (477)
T ss_dssp E
T ss_pred E
Confidence 3
No 491
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=64.45 E-value=1.9e+02 Score=30.34 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=49.6
Q ss_pred EeCCCcEEEEEcCCCeEEEe--ccCCcceEEEEEcc------CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 447 GSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCP------DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 447 gs~Dg~V~iwdl~~~~~~~~--~~~~~~V~~v~~sp------dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
|.--|.|-+||+...-+.++ ...-.....|+..| .|.+|+---.||+|..||..+++.+-.+.- ..-...
T Consensus 218 G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~--~~G~pi 295 (336)
T TIGR03118 218 GAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD--PDNHPV 295 (336)
T ss_pred CCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC--CCCCeE
Confidence 33447899999876554433 22334456677766 466666667799999999998876543221 111112
Q ss_pred CCCCeEEEEEcC
Q 004410 519 PGKRITGFQFSP 530 (755)
Q Consensus 519 ~~~~I~~v~fsp 530 (755)
....++.++|..
T Consensus 296 ~i~GLWgL~fGn 307 (336)
T TIGR03118 296 KVDGLWSLTFGN 307 (336)
T ss_pred EecCeEEeeeCC
Confidence 234567777754
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=63.90 E-value=2.2e+02 Score=30.97 Aligned_cols=161 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred eeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc--CCCe--EEEEeCC----CcEEEEECCCCeEeeee
Q 004410 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP--DGKG--GIVGTMT----GNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp--dg~~--la~gs~d----g~I~iwD~~~~~~~~~~ 508 (755)
+| ...+++....++-+.+||+...++..+...+-.-..+.+.- +|+. |++++.. ..|++|-+....-....
T Consensus 65 dp-~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 65 DP-AKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp -G-GG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred Cc-ccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Q ss_pred eEEecccccCCCCCeEEEEE--cCCCCC-EEEEEECCCcEEEEECCc----ceeeEEEeeeccCCceEEEEEecCCCEEE
Q 004410 509 QICLQGKKKLPGKRITGFQF--SPSDPS-KVIVTSADSLVRVLCGEN----VVGKFKASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~f--sp~d~~-~l~s~s~Dg~I~iwd~~~----~~~~~~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
..............++++|+ +|.++. ++++...+|.+.-|.+.. .........+.....+..+.......+|+
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Q ss_pred EEeCCCcEEEEEcCCCC
Q 004410 582 SPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~ 598 (755)
.+-+|--|.-|+.+...
T Consensus 224 vgEE~~GIW~y~Aep~~ 240 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEG 240 (381)
T ss_dssp EEETTTEEEEEESSCCC
T ss_pred EecCccEEEEEecCCCC
No 493
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=63.81 E-value=1.6e+02 Score=30.65 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCeEEEe-ccCCcceEEEEEccCCCeEEEEe------CCCcEEEEECCCCeEeeeeeEEecccc-cCCCCC
Q 004410 451 GKVRIWEVRRCQVVDY-TDIREIVSAVCYCPDGKGGIVGT------MTGNCRFYDIKDNQLYQQNQICLQGKK-KLPGKR 522 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~-~~~~~~V~~v~~spdg~~la~gs------~dg~I~iwD~~~~~~~~~~~~~~~~~~-~~~~~~ 522 (755)
..|++||..+.+-... ....+.|+++.|..+.+.++.|. ....+..||+.+..-.. +.... ..-..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~-----~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS-----LGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee-----cCCcccccCCCc
Confidence 4599999988876642 34678899999987666666664 34558889988775421 11100 112367
Q ss_pred eEEEEEcCCCCCEEE-EEE-C--CCcEEEEECCc
Q 004410 523 ITGFQFSPSDPSKVI-VTS-A--DSLVRVLCGEN 552 (755)
Q Consensus 523 I~~v~fsp~d~~~l~-s~s-~--Dg~I~iwd~~~ 552 (755)
++.+.+...+...+. .|. . +..|..||...
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 888888665555444 333 2 33466677554
No 494
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=63.21 E-value=2e+02 Score=30.05 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=61.1
Q ss_pred CcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEe------CCCcEEEEEcCCCeEEEecc-----CCcceEEE
Q 004410 409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS------IDGKVRIWEVRRCQVVDYTD-----IREIVSAV 476 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs------~Dg~V~iwdl~~~~~~~~~~-----~~~~V~~v 476 (755)
..|++||..+.+....-. -.+.|+.|.|.. +..+++.|. ....+..||+.+.....+.. ..++|+.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 459999988877665442 568899999985 667777765 35568899998877654433 34778888
Q ss_pred EEcc-CCCeEE-EEe-CCCc--EEEEECCCC
Q 004410 477 CYCP-DGKGGI-VGT-MTGN--CRFYDIKDN 502 (755)
Q Consensus 477 ~~sp-dg~~la-~gs-~dg~--I~iwD~~~~ 502 (755)
.+.. |+..+. .|. .+|. |..||=...
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 7754 444344 443 3444 556654433
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=63.02 E-value=1.2e+02 Score=33.76 Aligned_cols=30 Identities=10% Similarity=0.308 Sum_probs=25.4
Q ss_pred ceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 567 SQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 567 ~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
.|..++..+..+.|++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388999999999999999999999999985
No 496
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=61.83 E-value=2.1e+02 Score=30.06 Aligned_cols=203 Identities=9% Similarity=0.007 Sum_probs=93.0
Q ss_pred CCCCEEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeE----------------EEEEecCCcEEEEEEeeCCCCEEEEEe
Q 004410 387 HSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRC----------------LRVFSHNNYVTSVAFNPVDDNYFISGS 448 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~----------------~~~~~h~~~V~~i~fsp~d~~~l~sgs 448 (755)
+...|+++...+.. .| +.++....++++++..-.. ...+.+.....-..+.......++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 45578888887765 33 3344444599998732211 122334443333333321223455566
Q ss_pred CCCcEEEEEcCCC--eEEEec-------cCCcceEEEEEccC--CCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 449 IDGKVRIWEVRRC--QVVDYT-------DIREIVSAVCYCPD--GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 449 ~Dg~V~iwdl~~~--~~~~~~-------~~~~~V~~v~~spd--g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
...+|.++..... +..... .....+..+..+++ ...+++|+..+...++++... +.......+.....
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~-~~~~~d~sl~~~~~ 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHES-LVSKEDLSLPFLSE 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeec-cccccccccccccc
Confidence 6677777654332 111111 11223333433443 568888887644555555321 00000000000000
Q ss_pred CCC-CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 518 LPG-KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 518 ~~~-~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
... .++..+.+.. ..++.+-.+..+. .|.......... ...-.....++++. ..||+.-+. ..|-|+++.+
T Consensus 200 ~~~~~p~~i~~l~~---~e~Llc~~~~~v~-Vn~~G~~~~r~~-~l~w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~ 271 (302)
T smart00036 200 ETSLKPISVVQVPR---DEFLLCYDEFGVF-VNLYGKRRSRNP-ILHWEFMPESFAYH--SPYLLAFHD-NGIEIRSIKT 271 (302)
T ss_pred ccccCceEEEEECC---CeEEEEECcEEEE-EeCCCCccccce-EEEcCCcccEEEEE--CCEEEEEcC-CcEEEEECCC
Confidence 111 3444444432 3444444444333 333220111100 12233455667766 467776654 5699999998
Q ss_pred CC
Q 004410 597 QD 598 (755)
Q Consensus 597 ~~ 598 (755)
++
T Consensus 272 ~~ 273 (302)
T smart00036 272 GE 273 (302)
T ss_pred Cc
Confidence 86
No 497
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=61.54 E-value=2.3e+02 Score=30.29 Aligned_cols=52 Identities=12% Similarity=0.219 Sum_probs=28.9
Q ss_pred CCCEEEEEeCC-----------CcEEEEEcCCCeEEEec-cCCcceEEE-EE-ccCCCeEEEEeCC
Q 004410 440 DDNYFISGSID-----------GKVRIWEVRRCQVVDYT-DIREIVSAV-CY-CPDGKGGIVGTMT 491 (755)
Q Consensus 440 d~~~l~sgs~D-----------g~V~iwdl~~~~~~~~~-~~~~~V~~v-~~-spdg~~la~gs~d 491 (755)
++.+++.|+.+ ..+..||..+..-.... ......... +. .-+++..++|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 67788888753 24777888776544332 111111111 11 3477888887764
No 498
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=60.49 E-value=2.5e+02 Score=30.39 Aligned_cols=183 Identities=13% Similarity=0.039 Sum_probs=96.3
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEecCC--cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc----c
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE----I 472 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~--~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~----~ 472 (755)
+|.++.++.++.++.+|..+++.+-.+.-.. .+..-.+. ....++.++.++.+.-.|..++..+-...... .
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~ 188 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS 188 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence 6788999999999999998898888776444 11121221 23344444477888888888887763222211 1
Q ss_pred eEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCC--CCCe--EEEEEcCCCCCEEEEEECCCcEE
Q 004410 473 VSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLP--GKRI--TGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~--~~~I--~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
+..-.. .....+..+.. ++.+.-+|+.++................. ...+ ..+-. +.-+..++.++.+.
T Consensus 189 ~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v----~~~~~~~~~~g~~~ 263 (370)
T COG1520 189 IYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYV----DGGVYAGSYGGKLL 263 (370)
T ss_pred cccCce-eecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEE----CCcEEEEecCCeEE
Confidence 111111 12334555555 66788888888887665322111100000 0000 01111 12235666677777
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE---eCCCcEEEEEcCCCC
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP---SEDSNIYIWNYSNQD 598 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg---s~Dg~I~iWd~~~~~ 598 (755)
-.+..+.......... ..-++.-+.+. ..||.++++......
T Consensus 264 ~l~~~~G~~~W~~~~~----------~~~~~~~~~~~~~~~~dG~v~~~~~~~~~ 308 (370)
T COG1520 264 CLDADTGELIWSFPAG----------GSVQGSGLYTTPVAGADGKVYIGFTDNDG 308 (370)
T ss_pred EEEcCCCceEEEEecc----------cEeccCCeeEEeecCCCccEEEEEecccc
Confidence 7777766665554221 00111111111 158889988765543
No 499
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=59.16 E-value=3.2e+02 Score=31.13 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=73.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCe---EEEeccC-CcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQ---VVDYTDI-REIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~---~~~~~~~-~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
++..++.+..+|.+....+.... .+...+. ....+++++-.+| .+|++|+.-|.=.++.+....+....
T Consensus 221 ~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~------ 294 (504)
T PF10433_consen 221 DGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLD------ 294 (504)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEE------
T ss_pred CCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEE------
Confidence 67889999999999988876543 2233333 4456677776665 47778887666555544432222110
Q ss_pred cccCCCCCeEEEEEcCC---CCC------EEEEEE---CCCcEEEEECCcceeeEEEeeecc--CCceEEEEEec-CCCE
Q 004410 515 KKKLPGKRITGFQFSPS---DPS------KVIVTS---ADSLVRVLCGENVVGKFKASAFRV--AGSQMFATFTS-DGKH 579 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~---d~~------~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~--~~~v~~l~fsp-dg~~ 579 (755)
.-..-++|.++++.+. ... .|++++ .+|.+++..-.-............ ...++.+.... +..|
T Consensus 295 -~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~ 373 (504)
T PF10433_consen 295 -SLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSY 373 (504)
T ss_dssp -EE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSE
T ss_pred -eccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceE
Confidence 1113467888888532 121 555554 467888875322222011111222 22333333222 2467
Q ss_pred EEEEeCCCcEEEEEcC
Q 004410 580 VVSPSEDSNIYIWNYS 595 (755)
Q Consensus 580 L~sgs~Dg~I~iWd~~ 595 (755)
|+.+..+ .-+++.+.
T Consensus 374 lv~S~~~-~T~vl~~~ 388 (504)
T PF10433_consen 374 LVLSFPN-ETRVLQIS 388 (504)
T ss_dssp EEEEESS-EEEEEEES
T ss_pred EEEEcCC-ceEEEEEe
Confidence 7766654 55566664
No 500
>PRK13615 lipoprotein LpqB; Provisional
Probab=58.70 E-value=3.4e+02 Score=31.35 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=40.5
Q ss_pred CCEEEEEEcCCC-eEEEEe---CCCcEEEEeCC--CC--eEE----EEE-ecCCcEEEEEEeeCCCCEEEEEe---CCCc
Q 004410 389 SEVLDLSWSKNG-FLLSSS---ADKTVRLWQVG--ID--RCL----RVF-SHNNYVTSVAFNPVDDNYFISGS---IDGK 452 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s---~Dg~V~iWdl~--s~--~~~----~~~-~h~~~V~~i~fsp~d~~~l~sgs---~Dg~ 452 (755)
..|..+..|+|| .++... ..+.|.|--+. .+ ..+ ..+ .....+.++.|.. ++.+.+.+. .+..
T Consensus 417 ~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~-~~~laVl~~~~~~~~~ 495 (557)
T PRK13615 417 GRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVD-ELDVATLTLAPDGERQ 495 (557)
T ss_pred CeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcC-CCEEEEEeccCCCCce
Confidence 579999999999 444332 23455554322 23 122 111 1334889999998 777655552 2345
Q ss_pred EEEEEcC
Q 004410 453 VRIWEVR 459 (755)
Q Consensus 453 V~iwdl~ 459 (755)
+++..+.
T Consensus 496 v~~v~v~ 502 (557)
T PRK13615 496 VELHQVG 502 (557)
T ss_pred EEEEECC
Confidence 6666665
Done!