Query 004410
Match_columns 755
No_of_seqs 984 out of 4339
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 00:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 7.2E-40 2.5E-44 352.8 42.0 293 226-593 46-340 (340)
2 1nr0_A Actin interacting prote 100.0 8.1E-40 2.8E-44 381.0 45.2 340 228-596 52-522 (611)
3 1vyh_C Platelet-activating fac 100.0 4.8E-40 1.6E-44 363.7 39.2 286 229-595 102-410 (410)
4 3ow8_A WD repeat-containing pr 100.0 1.4E-39 4.8E-44 347.8 38.7 289 228-595 25-320 (321)
5 4g56_B MGC81050 protein; prote 100.0 3E-39 1E-43 350.6 36.4 305 221-598 28-345 (357)
6 3frx_A Guanine nucleotide-bind 100.0 1.2E-38 4.1E-43 340.1 40.3 298 225-597 7-318 (319)
7 2pbi_B Guanine nucleotide-bind 100.0 2.1E-38 7.1E-43 343.5 41.4 297 225-593 54-354 (354)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.1E-39 2.1E-43 346.3 36.7 310 225-600 5-339 (345)
9 4gqb_B Methylosome protein 50; 100.0 6.9E-39 2.3E-43 345.8 36.8 305 223-598 18-333 (344)
10 2ymu_A WD-40 repeat protein; u 100.0 9.2E-38 3.1E-42 360.1 48.5 336 230-595 11-415 (577)
11 3iz6_a 40S ribosomal protein R 100.0 1.9E-39 6.5E-44 355.1 31.4 308 227-598 58-377 (380)
12 2xzm_R RACK1; ribosome, transl 100.0 2.5E-38 8.5E-43 341.1 38.2 300 225-597 11-341 (343)
13 1nr0_A Actin interacting prote 100.0 3.5E-38 1.2E-42 367.2 42.2 348 228-595 140-610 (611)
14 2ynn_A Coatomer subunit beta'; 100.0 8.3E-38 2.8E-42 331.1 39.1 290 227-597 5-303 (304)
15 2hes_X YDR267CP; beta-propelle 100.0 5.5E-37 1.9E-41 328.8 38.4 305 227-596 6-328 (330)
16 4ery_A WD repeat-containing pr 100.0 1.4E-36 4.8E-41 322.2 40.9 290 228-595 16-311 (312)
17 1erj_A Transcriptional repress 100.0 9.8E-37 3.4E-41 335.1 40.4 298 233-597 62-390 (393)
18 2ymu_A WD-40 repeat protein; u 100.0 3.5E-36 1.2E-40 346.8 43.8 321 228-593 255-577 (577)
19 4aow_A Guanine nucleotide-bind 100.0 2E-35 6.8E-40 315.9 41.9 295 229-598 32-339 (340)
20 2ynn_A Coatomer subunit beta'; 100.0 2E-35 7E-40 312.7 39.3 251 276-598 5-261 (304)
21 4g56_B MGC81050 protein; prote 100.0 5.3E-36 1.8E-40 325.0 33.2 279 241-598 11-303 (357)
22 1gxr_A ESG1, transducin-like e 100.0 1E-34 3.4E-39 309.4 42.5 283 233-594 49-335 (337)
23 1r5m_A SIR4-interacting protei 100.0 2.8E-35 9.6E-40 324.1 38.5 328 234-595 44-424 (425)
24 3sfz_A APAF-1, apoptotic pepti 100.0 4.4E-35 1.5E-39 368.6 44.0 341 230-599 610-1037(1249)
25 3dm0_A Maltose-binding peripla 100.0 7.9E-35 2.7E-39 344.1 42.6 295 225-595 372-692 (694)
26 1vyh_C Platelet-activating fac 100.0 1E-34 3.4E-39 321.1 38.2 248 278-598 102-371 (410)
27 3ow8_A WD repeat-containing pr 100.0 1.7E-34 5.7E-39 308.4 36.5 249 278-598 26-281 (321)
28 2pm9_A Protein WEB1, protein t 100.0 1.3E-35 4.5E-40 326.8 28.6 335 235-597 12-415 (416)
29 1pgu_A Actin interacting prote 100.0 2.2E-33 7.4E-38 325.3 48.0 251 233-507 16-289 (615)
30 3zwl_B Eukaryotic translation 100.0 5.5E-34 1.9E-38 307.5 40.0 290 226-598 23-348 (369)
31 3frx_A Guanine nucleotide-bind 100.0 7.1E-34 2.4E-38 303.1 39.8 251 276-597 9-268 (319)
32 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-33 3.4E-38 305.4 41.4 256 276-598 7-285 (345)
33 1sq9_A Antiviral protein SKI8; 100.0 1.1E-34 3.8E-39 317.5 33.8 311 225-598 6-397 (397)
34 3ei3_B DNA damage-binding prot 100.0 1.6E-34 5.5E-39 315.4 34.3 299 226-596 64-382 (383)
35 4gqb_B Methylosome protein 50; 100.0 2.3E-34 7.9E-39 310.3 34.9 244 234-552 81-331 (344)
36 2oaj_A Protein SNI1; WD40 repe 100.0 4.6E-34 1.6E-38 345.7 41.3 210 228-465 10-247 (902)
37 1got_B GT-beta; complex (GTP-b 100.0 1.6E-33 5.6E-38 303.0 41.2 250 276-598 47-303 (340)
38 3i2n_A WD repeat-containing pr 100.0 1.6E-34 5.4E-39 310.8 32.1 296 231-598 14-355 (357)
39 1k8k_C P40, ARP2/3 complex 41 100.0 4.5E-34 1.5E-38 309.3 35.5 291 233-599 6-364 (372)
40 2xzm_R RACK1; ribosome, transl 100.0 3.2E-33 1.1E-37 301.0 40.9 254 276-598 13-287 (343)
41 3odt_A Protein DOA1; ubiquitin 100.0 2.6E-33 8.8E-38 295.5 38.9 289 226-598 9-298 (313)
42 1erj_A Transcriptional repress 100.0 4.9E-33 1.7E-37 305.6 42.1 270 281-598 61-343 (393)
43 4e54_B DNA damage-binding prot 100.0 4E-35 1.4E-39 326.7 25.6 300 229-598 113-432 (435)
44 3vl1_A 26S proteasome regulato 100.0 8.7E-34 3E-38 313.1 34.6 283 236-598 57-367 (420)
45 2pm7_B Protein transport prote 100.0 2.4E-33 8.2E-38 295.8 34.4 253 279-596 4-285 (297)
46 3k26_A Polycomb protein EED; W 100.0 5.9E-34 2E-38 307.1 29.9 298 231-596 14-366 (366)
47 1gxr_A ESG1, transducin-like e 100.0 1.3E-32 4.3E-37 293.1 39.6 286 235-599 9-299 (337)
48 4h5i_A Guanine nucleotide-exch 100.0 1.9E-33 6.4E-38 305.9 32.4 314 237-613 16-361 (365)
49 2pbi_B Guanine nucleotide-bind 100.0 1.6E-32 5.5E-37 297.2 39.1 250 277-598 57-317 (354)
50 3dwl_C Actin-related protein 2 100.0 2.4E-34 8.2E-39 313.0 24.3 290 234-594 10-377 (377)
51 4aez_A CDC20, WD repeat-contai 100.0 2.3E-32 7.8E-37 300.9 40.4 286 233-599 89-383 (401)
52 3sfz_A APAF-1, apoptotic pepti 100.0 6.8E-33 2.3E-37 348.6 39.4 349 228-600 650-1162(1249)
53 4ery_A WD repeat-containing pr 100.0 5.2E-32 1.8E-36 287.0 39.1 250 276-598 15-270 (312)
54 3gre_A Serine/threonine-protei 100.0 1.4E-33 4.8E-38 313.7 27.9 306 229-593 56-437 (437)
55 1pgu_A Actin interacting prote 100.0 4E-32 1.4E-36 314.6 40.9 345 228-596 153-614 (615)
56 3v7d_B Cell division control p 100.0 2.3E-31 7.9E-36 298.2 43.6 285 227-600 113-425 (464)
57 4aow_A Guanine nucleotide-bind 100.0 1.9E-31 6.5E-36 284.9 40.9 274 251-598 8-288 (340)
58 3vl1_A 26S proteasome regulato 100.0 1E-32 3.4E-37 304.6 31.4 278 240-596 102-419 (420)
59 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.3E-31 1.1E-35 295.7 43.6 324 227-597 110-443 (445)
60 4gga_A P55CDC, cell division c 100.0 1.6E-31 5.5E-36 296.1 40.4 279 238-599 108-398 (420)
61 4a11_B DNA excision repair pro 100.0 8.1E-32 2.8E-36 294.9 36.9 304 226-599 34-368 (408)
62 2j04_B YDR362CP, TAU91; beta p 100.0 5.3E-33 1.8E-37 315.5 26.5 287 247-597 173-518 (524)
63 2pm7_B Protein transport prote 100.0 5.9E-32 2E-36 285.1 32.3 253 230-551 4-284 (297)
64 4ggc_A P55CDC, cell division c 100.0 6.3E-31 2.2E-35 278.0 38.8 278 238-598 28-317 (318)
65 2oaj_A Protein SNI1; WD40 repe 100.0 2E-31 6.7E-36 322.7 39.1 332 235-598 58-666 (902)
66 2hes_X YDR267CP; beta-propelle 100.0 3.4E-31 1.2E-35 283.7 36.6 253 275-597 5-281 (330)
67 3bg1_A Protein SEC13 homolog; 100.0 1.2E-32 4.1E-37 293.2 25.0 252 279-596 8-293 (316)
68 3dw8_B Serine/threonine-protei 100.0 1.8E-31 6.1E-36 296.9 35.3 329 235-595 28-445 (447)
69 3iz6_a 40S ribosomal protein R 100.0 3.3E-32 1.1E-36 297.6 28.7 252 276-598 58-331 (380)
70 1yfq_A Cell cycle arrest prote 100.0 5.5E-32 1.9E-36 289.5 29.7 284 231-594 7-322 (342)
71 3jrp_A Fusion protein of prote 100.0 1.7E-31 5.8E-36 289.3 33.3 257 277-598 4-289 (379)
72 3gre_A Serine/threonine-protei 100.0 5.9E-32 2E-36 300.5 30.4 278 241-598 33-361 (437)
73 3mkq_A Coatomer beta'-subunit; 100.0 3E-31 1E-35 318.5 37.1 292 227-598 5-304 (814)
74 3dwl_C Actin-related protein 2 100.0 3.7E-32 1.3E-36 295.7 25.0 252 280-596 7-281 (377)
75 3f3f_A Nucleoporin SEH1; struc 100.0 1E-30 3.4E-35 278.6 35.1 255 278-598 5-339 (351)
76 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-31 4.7E-36 294.6 29.1 293 238-598 37-344 (402)
77 3mmy_A MRNA export factor; mRN 100.0 3.1E-31 1.1E-35 285.8 31.0 297 226-597 30-347 (368)
78 3dm0_A Maltose-binding peripla 100.0 1.5E-30 5E-35 307.5 39.2 250 278-598 376-634 (694)
79 3bg1_A Protein SEC13 homolog; 100.0 9.5E-32 3.2E-36 286.2 25.3 250 231-551 9-292 (316)
80 1r5m_A SIR4-interacting protei 100.0 2.2E-30 7.5E-35 284.9 34.0 299 258-598 26-363 (425)
81 1p22_A F-BOX/WD-repeat protein 100.0 2.4E-30 8.2E-35 288.0 33.5 268 241-598 137-416 (435)
82 3zwl_B Eukaryotic translation 100.0 3.6E-29 1.2E-33 269.7 40.0 247 277-598 25-306 (369)
83 3k26_A Polycomb protein EED; W 100.0 7.6E-30 2.6E-34 274.9 33.7 259 280-598 14-320 (366)
84 1k8k_C P40, ARP2/3 complex 41 100.0 3.6E-29 1.2E-33 270.7 37.6 244 280-596 4-274 (372)
85 2pm9_A Protein WEB1, protein t 100.0 1.2E-30 4.1E-35 287.2 26.3 289 284-599 12-340 (416)
86 3ei3_B DNA damage-binding prot 100.0 2.2E-29 7.5E-34 274.7 33.9 252 276-599 65-342 (383)
87 4e54_B DNA damage-binding prot 100.0 6.4E-30 2.2E-34 284.6 29.2 254 277-599 112-390 (435)
88 3jrp_A Fusion protein of prote 100.0 2.3E-29 7.7E-34 272.6 32.2 257 227-552 3-287 (379)
89 3v7d_B Cell division control p 100.0 5E-29 1.7E-33 279.2 35.7 302 228-594 155-461 (464)
90 3f3f_A Nucleoporin SEH1; struc 100.0 2.5E-29 8.6E-34 267.7 30.6 267 230-553 6-338 (351)
91 2j04_B YDR362CP, TAU91; beta p 100.0 6.3E-30 2.2E-34 290.3 26.1 204 383-597 202-429 (524)
92 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-28 4.1E-33 295.8 38.3 332 229-596 49-423 (814)
93 1sq9_A Antiviral protein SKI8; 100.0 8.8E-29 3E-33 270.6 31.3 255 277-599 9-325 (397)
94 3i2n_A WD repeat-containing pr 100.0 1.1E-28 3.7E-33 265.2 30.2 250 278-598 12-293 (357)
95 2xyi_A Probable histone-bindin 100.0 2.3E-28 7.8E-33 271.7 33.7 260 278-597 122-411 (430)
96 3jro_A Fusion protein of prote 100.0 2.8E-29 9.5E-34 299.1 27.4 256 278-598 3-287 (753)
97 3dw8_B Serine/threonine-protei 100.0 6.9E-29 2.4E-33 276.0 28.3 260 282-598 26-375 (447)
98 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-27 4.2E-32 251.8 36.1 244 274-598 8-257 (313)
99 1yfq_A Cell cycle arrest prote 100.0 1.2E-28 4.2E-33 263.4 28.4 249 280-599 7-285 (342)
100 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.3E-28 2.2E-32 269.7 35.3 297 236-597 5-392 (450)
101 3vu4_A KMHSV2; beta-propeller 100.0 1.8E-28 6.3E-33 265.3 29.6 282 230-598 14-338 (355)
102 3bws_A Protein LP49; two-domai 100.0 1.4E-27 4.7E-32 264.7 37.3 282 237-596 124-432 (433)
103 3mmy_A MRNA export factor; mRN 100.0 4.6E-28 1.6E-32 260.9 32.5 252 276-599 31-307 (368)
104 4aez_A CDC20, WD repeat-contai 100.0 3.5E-28 1.2E-32 267.5 31.1 246 234-556 133-384 (401)
105 2j04_A TAU60, YPL007P, hypothe 100.0 9.9E-29 3.4E-33 274.6 25.6 262 235-595 15-296 (588)
106 4gq1_A NUP37; propeller, trans 100.0 1.2E-28 4E-33 270.8 25.4 253 283-595 88-388 (393)
107 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-28 4.7E-33 264.7 25.0 278 241-597 42-334 (343)
108 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-26 4.3E-31 258.5 40.8 279 278-598 112-393 (445)
109 4gga_A P55CDC, cell division c 100.0 2.4E-27 8.3E-32 262.5 32.6 244 233-555 145-398 (420)
110 1l0q_A Surface layer protein; 100.0 2.6E-26 8.8E-31 250.8 39.1 266 248-598 3-277 (391)
111 4h5i_A Guanine nucleotide-exch 100.0 1E-27 3.5E-32 260.6 26.6 228 252-552 99-343 (365)
112 2aq5_A Coronin-1A; WD40 repeat 100.0 7E-27 2.4E-31 257.0 31.4 245 287-598 37-301 (402)
113 2xyi_A Probable histone-bindin 100.0 6.8E-27 2.3E-31 259.8 31.0 269 230-553 123-411 (430)
114 3jro_A Fusion protein of prote 100.0 1.3E-27 4.5E-32 284.6 26.5 255 229-552 3-285 (753)
115 4a11_B DNA excision repair pro 99.9 9.4E-26 3.2E-30 246.6 33.2 287 256-599 22-326 (408)
116 1p22_A F-BOX/WD-repeat protein 99.9 1.6E-25 5.5E-30 249.0 34.1 232 281-598 130-367 (435)
117 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.2E-25 3.9E-30 251.3 32.4 289 285-594 5-337 (450)
118 2j04_A TAU60, YPL007P, hypothe 99.9 1.6E-27 5.5E-32 264.9 16.8 251 230-597 47-322 (588)
119 4ggc_A P55CDC, cell division c 99.9 1.6E-25 5.4E-30 236.5 29.4 242 233-553 65-316 (318)
120 3vu4_A KMHSV2; beta-propeller 99.9 1.1E-25 3.8E-30 243.5 28.9 246 278-598 13-273 (355)
121 3lrv_A PRE-mRNA-splicing facto 99.9 2.7E-26 9.2E-31 246.8 21.9 232 291-598 43-294 (343)
122 4gq1_A NUP37; propeller, trans 99.9 2.1E-26 7.3E-31 252.7 20.6 237 239-549 93-386 (393)
123 1l0q_A Surface layer protein; 99.9 3.8E-24 1.3E-28 233.5 37.8 278 237-598 33-344 (391)
124 2w18_A PALB2, fancn, partner a 99.9 1.6E-24 5.6E-29 226.8 30.6 281 286-594 41-355 (356)
125 3bws_A Protein LP49; two-domai 99.9 1.6E-24 5.3E-29 240.0 32.4 248 279-598 118-392 (433)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.1E-24 1.8E-28 235.5 29.3 279 237-598 64-389 (415)
127 2w18_A PALB2, fancn, partner a 99.9 5.5E-23 1.9E-27 215.3 27.6 213 284-550 111-355 (356)
128 1nir_A Nitrite reductase; hemo 99.9 1.4E-22 4.8E-27 231.4 32.9 319 241-598 143-516 (543)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.5E-22 1.2E-26 220.8 30.8 246 247-578 143-410 (415)
130 1ri6_A Putative isomerase YBHE 99.9 9.8E-22 3.4E-26 209.4 31.3 278 249-595 7-307 (343)
131 2ecf_A Dipeptidyl peptidase IV 99.9 2.5E-21 8.5E-26 230.0 28.6 283 236-596 37-413 (741)
132 3u4y_A Uncharacterized protein 99.9 2.3E-20 7.9E-25 198.5 33.1 278 241-598 3-306 (331)
133 1k32_A Tricorn protease; prote 99.9 2.4E-20 8.2E-25 230.1 37.6 333 230-598 47-463 (1045)
134 2ojh_A Uncharacterized protein 99.9 1.1E-20 3.8E-25 196.1 26.6 254 252-587 17-293 (297)
135 1pby_B Quinohemoprotein amine 99.9 2.4E-20 8.2E-25 198.1 27.2 271 248-598 2-312 (337)
136 3hfq_A Uncharacterized protein 99.9 1.9E-19 6.4E-24 193.2 31.8 274 255-595 14-316 (347)
137 1xfd_A DIP, dipeptidyl aminope 99.9 3.4E-20 1.2E-24 219.4 28.5 280 238-597 19-394 (723)
138 3vgz_A Uncharacterized protein 99.9 4.7E-19 1.6E-23 189.7 34.6 276 236-587 41-335 (353)
139 2z3z_A Dipeptidyl aminopeptida 99.9 6.3E-20 2.2E-24 216.7 27.4 290 236-598 82-437 (706)
140 1k32_A Tricorn protease; prote 99.9 1.6E-19 5.3E-24 222.9 32.0 280 279-597 198-503 (1045)
141 1nir_A Nitrite reductase; hemo 99.8 2.4E-19 8.1E-24 204.7 30.1 294 238-559 181-521 (543)
142 2ecf_A Dipeptidyl peptidase IV 99.8 1.3E-19 4.4E-24 215.2 28.7 295 236-597 109-460 (741)
143 2oit_A Nucleoporin 214KDA; NH2 99.8 4.5E-19 1.6E-23 196.8 28.8 212 237-502 38-279 (434)
144 3o4h_A Acylamino-acid-releasin 99.8 1.9E-19 6.5E-24 207.7 25.0 267 237-596 23-315 (582)
145 3scy_A Hypothetical bacterial 99.8 5.2E-18 1.8E-22 183.0 34.3 279 244-595 10-336 (361)
146 2z3z_A Dipeptidyl aminopeptida 99.8 9.1E-19 3.1E-23 206.7 30.3 280 238-598 28-393 (706)
147 3vgz_A Uncharacterized protein 99.8 8.5E-18 2.9E-22 179.9 32.5 243 283-598 39-305 (353)
148 1ri6_A Putative isomerase YBHE 99.8 6.8E-18 2.3E-22 179.5 31.3 269 235-577 37-334 (343)
149 1jmx_B Amine dehydrogenase; ox 99.8 7.6E-18 2.6E-22 179.8 27.4 280 240-598 4-327 (349)
150 2ojh_A Uncharacterized protein 99.8 7.1E-18 2.4E-22 174.7 24.4 200 385-598 38-260 (297)
151 1xfd_A DIP, dipeptidyl aminope 99.8 4.4E-18 1.5E-22 201.3 24.9 299 238-597 63-444 (723)
152 3u4y_A Uncharacterized protein 99.8 2.7E-17 9.1E-22 174.7 28.3 236 291-598 4-254 (331)
153 3pe7_A Oligogalacturonate lyas 99.8 2.1E-17 7.2E-22 179.7 26.2 282 239-596 39-382 (388)
154 3o4h_A Acylamino-acid-releasin 99.8 4.7E-18 1.6E-22 196.0 21.7 232 283-594 20-274 (582)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 6.9E-18 2.4E-22 187.2 22.2 260 285-595 37-332 (434)
156 3hfq_A Uncharacterized protein 99.8 2.3E-16 7.9E-21 169.0 31.9 252 236-551 40-316 (347)
157 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.3E-17 1.8E-21 175.8 26.3 281 250-597 5-342 (365)
158 3scy_A Hypothetical bacterial 99.8 4E-16 1.4E-20 168.2 33.0 278 235-574 49-360 (361)
159 1pby_B Quinohemoprotein amine 99.8 1.6E-16 5.5E-21 168.4 26.1 192 391-598 36-271 (337)
160 1z68_A Fibroblast activation p 99.7 3.4E-17 1.2E-21 193.7 21.9 275 240-596 20-391 (719)
161 1z68_A Fibroblast activation p 99.7 6.1E-17 2.1E-21 191.5 20.2 287 238-598 62-445 (719)
162 2oiz_A Aromatic amine dehydrog 99.7 1.8E-15 6.3E-20 163.5 28.4 281 245-597 13-335 (361)
163 3c5m_A Oligogalacturonate lyas 99.7 9.9E-16 3.4E-20 166.5 24.6 298 236-598 36-386 (396)
164 4a5s_A Dipeptidyl peptidase 4 99.7 1E-15 3.5E-20 181.7 25.8 277 238-597 19-401 (740)
165 1q7f_A NHL, brain tumor CG1071 99.7 4.9E-14 1.7E-18 146.4 34.9 248 282-598 27-282 (286)
166 4a5s_A Dipeptidyl peptidase 4 99.7 2.2E-16 7.5E-21 187.5 19.0 249 286-598 18-355 (740)
167 3pe7_A Oligogalacturonate lyas 99.7 5.8E-15 2E-19 160.3 24.9 248 280-598 26-331 (388)
168 3azo_A Aminopeptidase; POP fam 99.7 2.5E-15 8.6E-20 175.8 23.5 295 231-598 19-371 (662)
169 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.6E-14 5.3E-19 156.3 27.2 245 237-553 41-342 (365)
170 2dg1_A DRP35, lactonase; beta 99.7 5.9E-14 2E-18 149.2 30.8 276 236-587 6-301 (333)
171 1jmx_B Amine dehydrogenase; ox 99.6 8.4E-15 2.9E-19 156.1 21.8 232 289-598 4-286 (349)
172 2gop_A Trilobed protease; beta 99.6 8.9E-14 3.1E-18 148.5 28.3 253 240-595 19-330 (347)
173 1q7f_A NHL, brain tumor CG1071 99.6 2.8E-13 9.4E-18 140.7 29.8 243 235-552 29-280 (286)
174 3fvz_A Peptidyl-glycine alpha- 99.6 6.7E-13 2.3E-17 141.3 32.5 203 386-597 88-323 (329)
175 3fvz_A Peptidyl-glycine alpha- 99.6 6.2E-13 2.1E-17 141.6 27.9 248 236-551 24-321 (329)
176 2bkl_A Prolyl endopeptidase; m 99.6 4.6E-14 1.6E-18 166.2 20.9 284 242-598 74-399 (695)
177 3c5m_A Oligogalacturonate lyas 99.6 3.3E-14 1.1E-18 154.4 17.8 191 394-598 86-331 (396)
178 3azo_A Aminopeptidase; POP fam 99.6 6.2E-14 2.1E-18 163.9 21.2 258 278-598 17-327 (662)
179 3dsm_A Uncharacterized protein 99.6 1.4E-12 4.7E-17 138.8 28.6 267 254-598 14-303 (328)
180 3e5z_A Putative gluconolactona 99.6 2.8E-12 9.7E-17 133.9 30.4 242 278-598 21-288 (296)
181 2xdw_A Prolyl endopeptidase; a 99.6 7.4E-13 2.5E-17 156.3 28.8 245 282-598 122-416 (710)
182 2oiz_A Aromatic amine dehydrog 99.6 4.3E-13 1.5E-17 144.8 24.5 254 240-578 54-360 (361)
183 2z2n_A Virginiamycin B lyase; 99.5 2.5E-11 8.5E-16 126.0 36.3 277 236-597 15-296 (299)
184 1qks_A Cytochrome CD1 nitrite 99.5 4E-11 1.4E-15 136.6 34.5 289 239-598 200-540 (567)
185 1rwi_B Serine/threonine-protei 99.5 5.1E-12 1.8E-16 129.6 24.5 239 286-598 25-266 (270)
186 3e5z_A Putative gluconolactona 99.5 7E-12 2.4E-16 130.9 25.3 224 238-543 30-278 (296)
187 1yr2_A Prolyl oligopeptidase; 99.5 2.3E-12 8E-17 152.8 24.0 282 243-598 114-443 (741)
188 2mad_H Methylamine dehydrogena 99.5 1.9E-10 6.5E-15 124.4 37.0 284 243-599 28-353 (373)
189 1qks_A Cytochrome CD1 nitrite 99.5 6.1E-11 2.1E-15 135.1 34.5 278 243-597 163-478 (567)
190 2gop_A Trilobed protease; beta 99.5 5.1E-12 1.7E-16 134.8 22.7 183 390-597 60-292 (347)
191 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 5.4E-11 1.8E-15 124.8 29.0 247 284-597 17-300 (314)
192 2qc5_A Streptogramin B lactona 99.4 3.8E-10 1.3E-14 117.0 34.7 274 237-595 21-299 (300)
193 2dg1_A DRP35, lactonase; beta 99.4 5.9E-12 2E-16 133.7 21.0 201 384-595 40-262 (333)
194 2xdw_A Prolyl endopeptidase; a 99.4 1.8E-11 6.3E-16 144.4 26.7 240 238-554 127-416 (710)
195 3no2_A Uncharacterized protein 99.4 7.2E-11 2.5E-15 122.2 27.7 213 295-584 4-231 (276)
196 3dsm_A Uncharacterized protein 99.4 8.6E-11 3E-15 124.9 28.3 235 241-551 49-301 (328)
197 1rwi_B Serine/threonine-protei 99.4 4.2E-11 1.4E-15 122.7 24.0 236 237-552 25-264 (270)
198 2bkl_A Prolyl endopeptidase; m 99.4 1.5E-11 5.2E-16 144.7 22.7 242 237-554 122-399 (695)
199 3sjl_D Methylamine dehydrogena 99.4 1.8E-10 6.2E-15 123.6 28.6 286 241-598 38-365 (386)
200 2z2n_A Virginiamycin B lyase; 99.4 8.4E-10 2.9E-14 114.3 33.1 235 283-594 13-253 (299)
201 3no2_A Uncharacterized protein 99.4 1.4E-10 4.6E-15 120.1 26.2 218 246-540 4-231 (276)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 5.9E-10 2E-14 116.7 27.6 242 237-552 19-299 (314)
203 3c75_H MADH, methylamine dehyd 99.3 8.3E-10 2.8E-14 120.5 28.8 283 245-598 82-404 (426)
204 2qc5_A Streptogramin B lactona 99.3 1.2E-08 4.2E-13 105.5 33.4 236 283-594 18-258 (300)
205 3dr2_A Exported gluconolactona 99.2 1.9E-09 6.3E-14 113.1 26.5 233 281-593 41-303 (305)
206 3hrp_A Uncharacterized protein 99.2 2.6E-09 9E-14 117.0 27.4 244 285-594 131-408 (409)
207 3g4e_A Regucalcin; six bladed 99.2 1.6E-08 5.4E-13 105.6 32.2 230 284-585 12-261 (297)
208 1xip_A Nucleoporin NUP159; bet 99.2 5E-10 1.7E-14 120.6 20.3 176 237-487 39-230 (388)
209 2ghs_A AGR_C_1268P; regucalcin 99.2 2.3E-08 7.8E-13 106.0 32.0 187 389-586 90-292 (326)
210 1xip_A Nucleoporin NUP159; bet 99.2 2.5E-10 8.7E-15 122.9 16.6 189 286-540 39-232 (388)
211 1yr2_A Prolyl oligopeptidase; 99.2 2E-09 6.9E-14 127.5 25.8 240 238-554 165-443 (741)
212 3iuj_A Prolyl endopeptidase; h 99.2 7.3E-10 2.5E-14 130.2 20.7 240 282-598 126-407 (693)
213 2mad_H Methylamine dehydrogena 99.2 2.7E-08 9.1E-13 107.5 30.9 236 240-556 70-354 (373)
214 3hrp_A Uncharacterized protein 99.2 6.6E-09 2.3E-13 113.8 26.3 244 237-550 132-408 (409)
215 3g4e_A Regucalcin; six bladed 99.1 1.9E-08 6.6E-13 104.9 28.2 223 240-541 17-261 (297)
216 2qe8_A Uncharacterized protein 99.1 2.6E-09 9E-14 114.1 21.7 279 237-593 18-318 (343)
217 2ghs_A AGR_C_1268P; regucalcin 99.1 6.9E-08 2.4E-12 102.2 29.0 220 240-541 53-291 (326)
218 3iuj_A Prolyl endopeptidase; h 99.1 9.8E-09 3.3E-13 120.6 24.3 236 238-554 131-407 (693)
219 3dr2_A Exported gluconolactona 99.1 1.2E-08 3.9E-13 107.0 22.2 225 239-547 48-302 (305)
220 3sjl_D Methylamine dehydrogena 99.1 1E-08 3.5E-13 109.9 21.8 254 241-576 83-384 (386)
221 2ece_A 462AA long hypothetical 99.0 3.1E-07 1.1E-11 99.1 29.0 191 392-584 141-399 (462)
222 1mda_H Methylamine dehydrogena 98.9 2.7E-08 9.4E-13 106.6 19.7 262 258-598 47-348 (368)
223 2qe8_A Uncharacterized protein 98.9 5E-08 1.7E-12 104.1 21.0 188 386-598 64-280 (343)
224 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2.2E-06 7.4E-11 92.3 33.2 302 246-593 52-375 (376)
225 3c75_H MADH, methylamine dehyd 98.9 7.5E-08 2.6E-12 105.0 20.5 240 240-558 122-408 (426)
226 1kb0_A Quinohemoprotein alcoho 98.8 1.6E-07 5.4E-12 109.6 23.2 187 408-599 189-510 (677)
227 1yiq_A Quinohemoprotein alcoho 98.8 1.9E-07 6.4E-12 109.3 23.0 288 247-600 70-509 (689)
228 2ece_A 462AA long hypothetical 98.8 2.1E-06 7.1E-11 92.8 27.9 234 242-540 88-399 (462)
229 3q7m_A Lipoprotein YFGL, BAMB; 98.7 6.3E-06 2.1E-10 88.6 28.2 270 296-598 53-339 (376)
230 3hxj_A Pyrrolo-quinoline quino 98.7 8.6E-07 2.9E-11 93.1 20.6 301 240-598 24-326 (330)
231 2hz6_A Endoplasmic reticulum t 98.7 2.5E-09 8.7E-14 115.5 0.7 180 399-598 9-194 (369)
232 2iwa_A Glutamine cyclotransfer 98.7 3.1E-06 1.1E-10 85.9 23.3 201 390-598 22-239 (266)
233 2hz6_A Endoplasmic reticulum t 98.7 7.3E-09 2.5E-13 111.9 3.9 220 295-598 8-238 (369)
234 1kb0_A Quinohemoprotein alcoho 98.7 4.3E-06 1.5E-10 97.4 27.3 292 246-582 127-536 (677)
235 1yiq_A Quinohemoprotein alcoho 98.6 3.8E-06 1.3E-10 98.1 26.2 181 393-585 239-538 (689)
236 1mda_H Methylamine dehydrogena 98.6 7.9E-07 2.7E-11 95.2 18.2 234 240-508 69-353 (368)
237 2iwa_A Glutamine cyclotransfer 98.6 5.1E-06 1.7E-10 84.3 22.7 201 287-552 23-237 (266)
238 1fwx_A Nitrous oxide reductase 98.6 9.9E-07 3.4E-11 98.5 18.0 186 408-598 174-433 (595)
239 4a2l_A BT_4663, two-component 98.6 0.00026 8.8E-09 84.2 39.8 326 238-598 217-573 (795)
240 2fp8_A Strictosidine synthase; 98.6 1E-05 3.5E-10 85.1 24.5 199 390-598 81-315 (322)
241 4a2l_A BT_4663, two-component 98.5 0.00048 1.6E-08 81.9 40.7 325 238-598 175-528 (795)
242 3nol_A Glutamine cyclotransfer 98.5 9.2E-06 3.1E-10 81.6 21.4 193 386-586 38-245 (262)
243 1npe_A Nidogen, entactin; glyc 98.5 0.00023 7.8E-09 72.3 32.2 253 248-578 2-263 (267)
244 2fp8_A Strictosidine synthase; 98.5 3.7E-05 1.3E-09 80.7 25.5 244 238-552 21-313 (322)
245 1kv9_A Type II quinohemoprotei 98.5 1.2E-05 4.1E-10 93.6 23.5 287 247-599 66-491 (668)
246 1fwx_A Nitrous oxide reductase 98.4 8.1E-06 2.8E-10 91.2 19.8 186 399-596 100-361 (595)
247 3nok_A Glutaminyl cyclase; bet 98.4 1.7E-05 5.6E-10 79.7 19.9 188 390-585 56-254 (268)
248 3mbr_X Glutamine cyclotransfer 98.4 8.1E-05 2.8E-09 74.0 24.8 190 389-585 21-223 (243)
249 3nol_A Glutamine cyclotransfer 98.4 2.5E-05 8.5E-10 78.4 21.1 187 287-540 45-243 (262)
250 1npe_A Nidogen, entactin; glyc 98.4 0.00017 5.9E-09 73.2 26.9 196 390-598 37-240 (267)
251 2p4o_A Hypothetical protein; p 98.4 0.00034 1.2E-08 72.7 29.5 227 285-587 32-279 (306)
252 3nok_A Glutaminyl cyclase; bet 98.3 6.2E-05 2.1E-09 75.5 21.8 187 286-539 56-253 (268)
253 2ad6_A Methanol dehydrogenase 98.3 0.0002 6.7E-09 81.6 29.0 196 399-599 160-497 (571)
254 3v9f_A Two-component system se 98.3 0.0013 4.3E-08 78.1 36.1 328 237-598 259-613 (781)
255 3mbr_X Glutamine cyclotransfer 98.3 0.00016 5.5E-09 71.9 23.3 189 285-539 21-222 (243)
256 3qqz_A Putative uncharacterize 98.3 0.00027 9.2E-09 71.2 24.8 209 383-594 21-251 (255)
257 1k3i_A Galactose oxidase precu 98.2 4.3E-05 1.5E-09 88.8 21.3 273 240-585 190-530 (656)
258 3v9f_A Two-component system se 98.2 0.0018 6.2E-08 76.7 35.5 201 388-598 362-570 (781)
259 1w6s_A Methanol dehydrogenase 98.2 0.00022 7.5E-09 81.3 26.3 188 407-599 180-506 (599)
260 3hxj_A Pyrrolo-quinoline quino 98.2 0.00011 3.7E-09 76.8 22.1 261 239-552 63-324 (330)
261 1ijq_A LDL receptor, low-densi 98.1 0.004 1.4E-07 65.0 30.4 201 389-598 30-240 (316)
262 1kv9_A Type II quinohemoprotei 98.1 0.0011 3.8E-08 76.9 28.4 180 393-584 234-520 (668)
263 3v65_B Low-density lipoprotein 98.0 0.0021 7E-08 69.3 28.1 199 389-598 116-320 (386)
264 2ad6_A Methanol dehydrogenase 98.0 0.00059 2E-08 77.6 24.7 160 410-581 273-522 (571)
265 2p4o_A Hypothetical protein; p 98.0 0.00072 2.5E-08 70.2 23.1 200 389-595 32-241 (306)
266 4hw6_A Hypothetical protein, I 98.0 0.0012 4.1E-08 72.3 25.4 206 389-595 182-432 (433)
267 3v64_C Agrin; beta propeller, 98.0 0.0032 1.1E-07 66.7 28.0 199 389-598 73-277 (349)
268 1k3i_A Galactose oxidase precu 98.0 0.00011 3.8E-09 85.3 18.0 206 392-598 246-499 (656)
269 3tc9_A Hypothetical hydrolase; 98.0 0.0012 4.1E-08 72.3 25.0 207 389-595 179-429 (430)
270 1flg_A Protein (quinoprotein e 97.9 0.0039 1.3E-07 71.0 29.2 146 451-599 291-519 (582)
271 3p5b_L Low density lipoprotein 97.9 0.012 3.9E-07 63.7 30.2 204 386-598 109-322 (400)
272 2xbg_A YCF48-like protein; pho 97.9 0.028 9.4E-07 58.8 32.2 192 390-594 123-320 (327)
273 3qqz_A Putative uncharacterize 97.8 0.0034 1.1E-07 63.1 23.2 203 235-499 26-251 (255)
274 2xe4_A Oligopeptidase B; hydro 97.8 0.00062 2.1E-08 80.3 20.7 146 393-548 225-394 (751)
275 1ijq_A LDL receptor, low-densi 97.8 0.0063 2.2E-07 63.4 25.8 181 407-597 8-196 (316)
276 3kya_A Putative phosphatase; s 97.7 0.0091 3.1E-07 65.8 25.7 207 389-598 186-477 (496)
277 3v64_C Agrin; beta propeller, 97.7 0.0067 2.3E-07 64.3 23.9 197 391-598 36-236 (349)
278 3amr_A 3-phytase; beta-propell 97.7 0.01 3.5E-07 62.0 24.0 182 401-595 42-262 (355)
279 3p5b_L Low density lipoprotein 97.6 0.013 4.5E-07 63.2 25.5 187 401-598 85-279 (400)
280 3v65_B Low-density lipoprotein 97.5 0.0073 2.5E-07 65.0 22.1 194 393-597 81-278 (386)
281 3sov_A LRP-6, low-density lipo 97.5 0.022 7.4E-07 59.4 24.8 198 390-598 36-240 (318)
282 2xe4_A Oligopeptidase B; hydro 97.5 0.0027 9.4E-08 74.7 19.8 194 390-594 175-398 (751)
283 3m0c_C LDL receptor, low-densi 97.5 0.039 1.3E-06 64.8 29.3 205 384-598 419-634 (791)
284 2p9w_A MAL S 1 allergenic prot 97.5 0.016 5.4E-07 60.0 22.4 202 388-594 12-263 (334)
285 1flg_A Protein (quinoprotein e 97.4 0.011 3.6E-07 67.4 22.5 60 450-509 465-524 (582)
286 4hw6_A Hypothetical protein, I 97.4 0.084 2.9E-06 57.5 29.0 155 389-551 139-303 (433)
287 3ei3_A DNA damage-binding prot 97.4 0.29 9.9E-06 60.0 36.1 315 248-598 524-915 (1158)
288 3amr_A 3-phytase; beta-propell 97.3 0.055 1.9E-06 56.5 24.7 117 390-507 129-270 (355)
289 3tc9_A Hypothetical hydrolase; 97.3 0.0063 2.2E-07 66.5 17.8 158 429-596 137-301 (430)
290 3m0c_C LDL receptor, low-densi 97.3 0.032 1.1E-06 65.6 24.7 183 406-598 401-591 (791)
291 1w6s_A Methanol dehydrogenase 97.2 0.01 3.4E-07 67.6 18.7 198 399-600 62-346 (599)
292 3ei3_A DNA damage-binding prot 97.2 0.85 2.9E-05 55.9 42.6 176 410-598 808-1001(1158)
293 2p9w_A MAL S 1 allergenic prot 97.1 0.014 4.9E-07 60.3 17.5 167 427-596 11-215 (334)
294 3sov_A LRP-6, low-density lipo 97.1 0.033 1.1E-06 58.0 20.4 181 407-598 11-199 (318)
295 2ism_A Putative oxidoreductase 97.1 0.077 2.6E-06 56.0 23.2 72 238-314 33-113 (352)
296 2xzh_A Clathrin heavy chain 1; 97.0 0.36 1.2E-05 49.5 31.4 263 257-598 49-334 (365)
297 1n7d_A LDL receptor, low-densi 97.0 0.0013 4.5E-08 76.6 9.8 201 389-598 406-616 (699)
298 3s94_A LRP-6, low-density lipo 97.0 0.75 2.6E-05 52.4 35.4 198 389-598 349-553 (619)
299 2ism_A Putative oxidoreductase 97.0 0.32 1.1E-05 51.2 26.9 193 388-584 74-333 (352)
300 2xbg_A YCF48-like protein; pho 96.9 0.5 1.7E-05 49.0 29.8 189 389-598 80-280 (327)
301 2g8s_A Glucose/sorbosone dehyd 96.9 0.22 7.6E-06 52.5 25.1 69 521-589 271-347 (353)
302 4a0p_A LRP6, LRP-6, low-densit 96.9 0.4 1.4E-05 54.7 28.9 197 389-598 37-239 (628)
303 3a9g_A Putative uncharacterize 96.9 0.29 9.8E-06 51.6 25.4 65 470-540 258-330 (354)
304 3s94_A LRP-6, low-density lipo 96.8 1.1 3.8E-05 51.0 39.3 183 406-598 323-512 (619)
305 4a0p_A LRP6, LRP-6, low-densit 96.7 1.2 4.1E-05 50.8 41.0 340 238-598 168-551 (628)
306 3a9g_A Putative uncharacterize 96.7 0.37 1.3E-05 50.8 24.6 192 389-584 73-330 (354)
307 3kya_A Putative phosphatase; s 96.7 0.041 1.4E-06 60.6 17.4 161 430-596 140-341 (496)
308 1cru_A Protein (soluble quinop 96.7 0.85 2.9E-05 49.7 28.1 32 285-316 27-58 (454)
309 2g8s_A Glucose/sorbosone dehyd 96.6 0.94 3.2E-05 47.6 27.1 63 471-539 271-340 (353)
310 1bpo_A Protein (clathrin); cla 96.5 1.2 4.2E-05 47.5 33.8 263 257-598 48-333 (494)
311 3sre_A PON1, serum paraoxonase 96.4 0.9 3.1E-05 47.7 24.7 187 391-592 52-294 (355)
312 3pbp_A Nucleoporin NUP82; beta 96.3 0.17 5.8E-06 54.0 18.2 151 440-592 31-208 (452)
313 1n7d_A LDL receptor, low-densi 96.1 0.0046 1.6E-07 72.0 6.0 181 407-597 384-572 (699)
314 4asc_A Kelch repeat and BTB do 96.1 1.3 4.3E-05 45.4 24.2 174 411-598 69-279 (315)
315 3das_A Putative oxidoreductase 96.1 1.7 5.7E-05 45.4 27.0 240 284-584 31-326 (347)
316 3ott_A Two-component system se 96.0 3.4 0.00012 48.1 30.4 194 389-598 63-262 (758)
317 1tl2_A L10, protein (tachylect 95.8 0.12 4E-06 50.1 13.1 178 401-596 6-208 (236)
318 2vpj_A Kelch-like protein 12; 95.8 1.1 3.8E-05 45.3 22.0 133 409-554 128-280 (301)
319 2xn4_A Kelch-like protein 2; s 95.7 0.47 1.6E-05 48.3 18.6 183 401-598 64-278 (302)
320 2vpj_A Kelch-like protein 12; 95.6 0.65 2.2E-05 47.2 19.2 183 401-598 65-280 (301)
321 3pbp_A Nucleoporin NUP82; beta 95.6 0.17 5.8E-06 53.9 14.5 145 397-548 29-208 (452)
322 2be1_A Serine/threonine-protei 95.5 0.53 1.8E-05 49.0 18.1 96 406-503 64-185 (339)
323 3sre_A PON1, serum paraoxonase 95.5 2.3 7.7E-05 44.6 23.0 109 389-500 165-297 (355)
324 3ii7_A Kelch-like protein 7; p 95.4 1.6 5.5E-05 44.3 21.4 143 401-556 104-276 (306)
325 3ii7_A Kelch-like protein 7; p 95.3 0.58 2E-05 47.7 17.6 183 401-598 58-274 (306)
326 2woz_A Kelch repeat and BTB do 95.0 2.1 7.3E-05 43.7 21.1 174 411-598 80-289 (318)
327 1cru_A Protein (soluble quinop 94.4 1.3 4.4E-05 48.3 18.2 111 428-541 26-163 (454)
328 2xn4_A Kelch-like protein 2; s 94.3 1.6 5.5E-05 44.2 17.8 175 409-598 30-231 (302)
329 1bpo_A Protein (clathrin); cla 94.0 7.8 0.00027 41.4 28.8 240 240-505 70-335 (494)
330 3das_A Putative oxidoreductase 93.9 1.4 4.7E-05 46.1 16.4 154 427-583 30-219 (347)
331 4asc_A Kelch repeat and BTB do 93.9 3.3 0.00011 42.1 19.4 182 401-598 7-223 (315)
332 1tl2_A L10, protein (tachylect 93.8 0.29 9.8E-06 47.4 9.9 98 391-494 90-203 (236)
333 1zgk_A Kelch-like ECH-associat 93.8 1.3 4.6E-05 45.1 16.1 175 409-598 90-289 (308)
334 1xi4_A Clathrin heavy chain; a 93.6 3.5 0.00012 50.6 20.8 204 390-598 107-333 (1630)
335 2be1_A Serine/threonine-protei 93.6 0.048 1.6E-06 57.0 4.5 198 399-600 10-235 (339)
336 2xzh_A Clathrin heavy chain 1; 93.5 7.9 0.00027 39.8 27.9 242 240-505 71-336 (365)
337 2uvk_A YJHT; unknown function, 92.8 2.4 8.3E-05 44.0 16.5 176 409-598 86-344 (357)
338 1zgk_A Kelch-like ECH-associat 92.6 1.8 6.2E-05 44.0 14.8 175 409-598 39-242 (308)
339 2woz_A Kelch repeat and BTB do 92.3 4.8 0.00016 41.0 17.7 175 410-598 25-233 (318)
340 2uvk_A YJHT; unknown function, 92.2 5.2 0.00018 41.4 18.2 95 409-505 168-298 (357)
341 3ott_A Two-component system se 92.2 21 0.00071 41.3 36.3 200 389-598 324-547 (758)
342 2zwa_A Leucine carboxyl methyl 91.7 4.6 0.00016 46.5 18.3 194 401-598 400-637 (695)
343 3uc1_A DNA gyrase subunit A; D 90.8 16 0.00056 37.5 19.7 100 401-501 159-279 (327)
344 3sbq_A Nitrous-oxide reductase 90.5 24 0.00081 39.0 25.1 115 468-585 320-454 (638)
345 3b7f_A Glycosyl hydrolase, BNR 90.3 20 0.00068 37.6 20.6 153 389-543 55-254 (394)
346 3s25_A Hypothetical 7-bladed b 90.2 10 0.00034 38.6 17.2 161 409-598 88-257 (302)
347 3b7f_A Glycosyl hydrolase, BNR 86.8 33 0.0011 35.9 28.6 194 389-591 115-367 (394)
348 2wg3_C Hedgehog-interacting pr 86.6 10 0.00034 41.3 15.1 116 471-587 14-160 (463)
349 1xi4_A Clathrin heavy chain; a 84.5 18 0.00063 44.5 16.8 240 241-505 71-335 (1630)
350 2zwa_A Leucine carboxyl methyl 84.4 12 0.0004 43.1 15.2 151 399-556 451-639 (695)
351 3s25_A Hypothetical 7-bladed b 83.7 39 0.0013 34.1 26.4 171 395-594 110-291 (302)
352 3q6k_A 43.2 kDa salivary prote 83.2 48 0.0016 34.7 22.1 170 410-583 124-341 (381)
353 2wg3_C Hedgehog-interacting pr 83.2 55 0.0019 35.3 28.5 60 235-295 13-79 (463)
354 3no0_A DNA gyrase subunit A; D 83.1 39 0.0013 33.6 21.1 203 390-597 25-247 (276)
355 3l6v_A GYRA, DNA gyrase subuni 80.6 58 0.002 33.9 22.3 197 398-598 5-267 (370)
356 1suu_A DNA gyrase subunit A; t 79.7 56 0.0019 33.1 21.8 191 401-596 10-231 (312)
357 3no0_A DNA gyrase subunit A; D 79.2 53 0.0018 32.6 19.7 99 401-501 129-246 (276)
358 1wp5_A Topoisomerase IV; broke 75.7 74 0.0025 32.4 23.8 199 397-596 48-277 (323)
359 1sqj_A OXG-RCBH, oligoxylogluc 74.5 56 0.0019 38.0 16.8 162 427-590 13-195 (789)
360 3uc1_A DNA gyrase subunit A; D 74.2 81 0.0028 32.2 22.4 195 401-597 55-280 (327)
361 4gq2_M Nucleoporin NUP120; bet 73.9 1.5E+02 0.0052 35.2 23.7 38 389-426 236-274 (950)
362 2rr3_B OSBP, oxysterol-binding 73.6 1.7 5.8E-05 29.2 1.9 21 4-24 12-32 (47)
363 1zi0_A DNA gyrase subunit A; b 72.1 86 0.003 31.6 25.1 196 399-596 53-277 (307)
364 2cn3_A Xyloglucanase, beta-1,4 67.5 1.8E+02 0.006 33.3 19.1 193 390-584 24-262 (737)
365 1zi0_A DNA gyrase subunit A; b 65.2 1.2E+02 0.0041 30.5 21.5 192 401-596 5-226 (307)
366 4gq2_M Nucleoporin NUP120; bet 63.1 33 0.0011 41.0 11.6 40 285-324 236-275 (950)
367 3qhy_B Beta-lactamase inhibito 62.4 1.3E+02 0.0043 29.8 15.2 183 390-598 64-248 (282)
368 3kci_A Probable E3 ubiquitin-p 60.3 1.6E+02 0.0056 30.5 29.1 196 391-597 107-346 (389)
369 3sbq_A Nitrous-oxide reductase 59.1 22 0.00075 39.2 8.1 100 390-490 324-454 (638)
370 3a0f_A Xyloglucanase; beta-pro 59.1 1.9E+02 0.0064 33.3 17.0 159 427-587 19-203 (763)
371 1sqj_A OXG-RCBH, oligoxylogluc 59.1 2.5E+02 0.0087 32.3 21.2 154 388-545 14-194 (789)
372 1suu_A DNA gyrase subunit A; t 56.1 1.7E+02 0.0059 29.4 26.0 152 400-553 59-232 (312)
373 2cn3_A Xyloglucanase, beta-1,4 55.2 1.3E+02 0.0045 34.4 14.7 114 429-542 23-153 (737)
374 3qhy_B Beta-lactamase inhibito 53.4 1.6E+02 0.0054 29.1 13.3 181 390-597 25-208 (282)
375 1wp5_A Topoisomerase IV; broke 45.6 2.5E+02 0.0087 28.3 22.4 192 401-596 7-225 (323)
376 3l6v_A GYRA, DNA gyrase subuni 41.6 3.2E+02 0.011 28.3 26.4 195 401-596 59-316 (370)
377 3kci_A Probable E3 ubiquitin-p 41.3 3.1E+02 0.011 28.2 23.6 190 401-596 64-293 (389)
378 4fhn_B Nucleoporin NUP120; pro 38.2 2.1E+02 0.0073 34.6 13.4 37 390-426 239-276 (1139)
379 3f7f_A Nucleoporin NUP120; nuc 34.1 41 0.0014 38.3 5.5 38 285-324 222-259 (729)
380 4fhn_B Nucleoporin NUP120; pro 31.6 30 0.001 42.3 4.3 40 286-325 239-278 (1139)
381 3a0f_A Xyloglucanase; beta-pro 30.7 6.5E+02 0.022 28.7 21.0 153 387-543 19-203 (763)
382 3f7f_A Nucleoporin NUP120; nuc 27.3 84 0.0029 35.8 6.6 37 390-427 223-259 (729)
383 1zvt_A Topoisomerase IV subuni 26.6 4.4E+02 0.015 25.4 14.9 154 442-597 3-164 (256)
384 4a9v_A PHOX; hydrolase, beta-p 23.7 2.1E+02 0.0073 31.6 8.8 59 429-488 476-548 (592)
385 3zwu_A Alkaline phosphatase PH 21.8 1.9E+02 0.0064 32.2 8.0 58 430-488 477-548 (592)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.2e-40 Score=352.77 Aligned_cols=293 Identities=19% Similarity=0.306 Sum_probs=255.4
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
+....+.+|.+.+.+++|+|++++|++|+.||+|+||+..... ....+..|...|.+++|+|++++||+|+.|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-------KVHAIPLRSSWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-------EEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-------cceEeecCCccEEEEEECCCCCEEEEEeCC
Confidence 3445678899999999999999999999999999999976543 234577899999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.|++|++.+.... ......+.
T Consensus 119 ~~v~iw~~~~~~~~----------------------------------------------------------~~~~~~~~ 140 (340)
T 1got_B 119 NICSIYNLKTREGN----------------------------------------------------------VRVSRELA 140 (340)
T ss_dssp CEEEEEETTTCSBS----------------------------------------------------------CEEEEEEE
T ss_pred CeEEEEECccCCCc----------------------------------------------------------ceeEEEec
Confidence 99999998764310 01134567
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
+|.+.|.++.|++++.+++++.|++|++||+.+++++..+. |...|++++|+| ++++|++|+.|+.|++||++++..+
T Consensus 141 ~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~ 219 (340)
T 1got_B 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCR 219 (340)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEE
T ss_pred CCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeE
Confidence 89999999999999999999999999999999999998885 999999999999 9999999999999999999998776
Q ss_pred -EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 465 -DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 465 -~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.+..|...|++++|+|++++|++|+.||+|++||+++++.+.... ...+...|++++|+| ++.+|++++.|+
T Consensus 220 ~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------~~~~~~~v~~~~~s~-~g~~l~~g~~d~ 292 (340)
T 1got_B 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS------HDNIICGITSVSFSK-SGRLLLAGYDDF 292 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------CTTCCSCEEEEEECT-TSSEEEEEETTS
T ss_pred EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc------cCCcccceEEEEECC-CCCEEEEECCCC
Confidence 577889999999999999999999999999999999887654321 122345799999999 999999999999
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
.|++||..+....... .+|...|.+++|+|+|++|++|+.|+.|+|||
T Consensus 293 ~i~vwd~~~~~~~~~~--~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 293 NCNVWDALKADRAGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEEEEEcccCcEeeEe--ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999998876554443 67999999999999999999999999999996
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.1e-40 Score=380.98 Aligned_cols=340 Identities=18% Similarity=0.214 Sum_probs=273.1
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC--
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-- 305 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D-- 305 (755)
...+.+|.+.+.+++|+|+|++||+|+.|++|+|||+...... ...++.+|.+.|.+++|+|||++||+++.+
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-----~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----LKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----EEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-----eeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence 3456778889999999999999999999999999997643221 224578899999999999999999998865
Q ss_pred --CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 306 --GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 306 --g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
+.|++|| .+.....+..+...+.++.|.++... .++.++.+..+.+|+.... +.+..
T Consensus 127 ~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~---------------~l~s~s~D~~v~lwd~~~~----~~~~~ 185 (611)
T 1nr0_A 127 RFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPF---------------RIISGSDDNTVAIFEGPPF----KFKST 185 (611)
T ss_dssp CSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSC---------------EEEEEETTSCEEEEETTTB----EEEEE
T ss_pred ceeEEEEee--CCCCcceecCCCCCceEEEECCCCCe---------------EEEEEeCCCeEEEEECCCC----eEeee
Confidence 3677776 55566666666666677777665422 2445667778888875432 34678
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE--------ecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--------SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~--------~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+ .|...|.+++|+| ++++|++++.|++|+
T Consensus 186 l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~ 264 (611)
T 1nr0_A 186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIK 264 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEE
Confidence 89999999999999999 9999999999999999999998887 5999999999999 999999999999999
Q ss_pred EEEcCCCeEEE--------------------------------------------eccCCcceEEEEEccCCCeEEEEeC
Q 004410 455 IWEVRRCQVVD--------------------------------------------YTDIREIVSAVCYCPDGKGGIVGTM 490 (755)
Q Consensus 455 iwdl~~~~~~~--------------------------------------------~~~~~~~V~~v~~spdg~~la~gs~ 490 (755)
+||+.+++++. +.+|...|++++|+|+|++|++++.
T Consensus 265 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~ 344 (611)
T 1nr0_A 265 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA 344 (611)
T ss_dssp EEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 99998765432 2357788999999999999999999
Q ss_pred CCcEEEEECCCCeEeeeee---------EE-----------------------------------eccc-----------
Q 004410 491 TGNCRFYDIKDNQLYQQNQ---------IC-----------------------------------LQGK----------- 515 (755)
Q Consensus 491 dg~I~iwD~~~~~~~~~~~---------~~-----------------------------------~~~~----------- 515 (755)
||+|++||+.++....... +. +...
T Consensus 345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424 (611)
T ss_dssp TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc
Confidence 9999999998765432210 00 0000
Q ss_pred -------------------ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecC
Q 004410 516 -------------------KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 516 -------------------~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspd 576 (755)
...+...+.+++|+| ++++|++++.|+.|++||........... ..|...|++++|+||
T Consensus 425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspd 502 (611)
T 1nr0_A 425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNN 502 (611)
T ss_dssp CEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTT
T ss_pred EEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCC
Confidence 001234578999999 89999999999999999987643322222 568899999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 004410 577 GKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 577 g~~L~sgs~Dg~I~iWd~~~ 596 (755)
|++|++++.|+.|++|++.+
T Consensus 503 g~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 503 GAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp SSEEEEEETTSCEEEEEGGG
T ss_pred CCEEEEEcCCCCEEEEEcCC
Confidence 99999999999999999987
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-40 Score=363.74 Aligned_cols=286 Identities=21% Similarity=0.324 Sum_probs=254.7
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
..+.+|...+.+++|+|++.+|++|+.||+|+|||+.+.. ..+.+.+|.+.|.+++|+|++++|++|+.|++|
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 4577889999999999999999999999999999987543 335688999999999999999999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
+|||+.+++. +..+.+|.
T Consensus 175 ~iwd~~~~~~--------------------------------------------------------------~~~~~~h~ 192 (410)
T 1vyh_C 175 KLWDFQGFEC--------------------------------------------------------------IRTMHGHD 192 (410)
T ss_dssp CEEETTSSCE--------------------------------------------------------------EECCCCCS
T ss_pred EEEeCCCCce--------------------------------------------------------------eEEEcCCC
Confidence 9999876543 33456799
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-E
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~ 465 (755)
..|.+++|+|++ +|++++.|++|++||+.++.++..+. |...|.++.|+| ++.+|++|+.|++|++||+.+++.. .
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~ 271 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAE 271 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeE
Confidence 999999999999 99999999999999999999998885 999999999999 9999999999999999999998776 5
Q ss_pred eccCCcceEEEEEccC--------------------CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEE
Q 004410 466 YTDIREIVSAVCYCPD--------------------GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525 (755)
Q Consensus 466 ~~~~~~~V~~v~~spd--------------------g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~ 525 (755)
+..|...|.+++|+|+ |.+|++|+.||.|++||++++..+..+ ..|...|++
T Consensus 272 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~--------~~h~~~v~~ 343 (410)
T 1vyh_C 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL--------VGHDNWVRG 343 (410)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEE
T ss_pred ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE--------ECCCCcEEE
Confidence 7789999999999996 678999999999999999998876532 346788999
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
++|+| ++.+|++++.|+.|++||..+....... ..|...|++++|+|++.+|++|+.||.|+||++.
T Consensus 344 v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 344 VLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTL--NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECS-SSSCEEEEETTTEEEEECCTTSCCCEEE--ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEE--cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999 8999999999999999999876555444 6789999999999999999999999999999863
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=347.76 Aligned_cols=289 Identities=17% Similarity=0.287 Sum_probs=251.4
Q ss_pred ccceeeeeccCcceeecCC----CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 228 LGAMARIIDRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spd----g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
++...+|.+.|.+++|+|+ +.+|++|+.|++|+||++..... .....+.+|...|.+++|++++.+|++++
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-----~~~~~l~gh~~~v~~~~~~~~~~~l~s~s 99 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-----DLQWSLEGHQLGVVSVDISHTLPIAASSS 99 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-----EEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-----eeeeeeccCCCCEEEEEECCCCCEEEEEe
Confidence 3455678899999999985 56899999999999999764332 12345789999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|++|+|||+.+++.+ ..
T Consensus 100 ~D~~i~lWd~~~~~~~--------------------------------------------------------------~~ 117 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQI--------------------------------------------------------------KS 117 (321)
T ss_dssp TTSEEEEEETTTTEEE--------------------------------------------------------------EE
T ss_pred CCCcEEEEECCCCCEE--------------------------------------------------------------EE
Confidence 9999999999887643 23
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
+..|...+.+++|+|++ +|++++.|+.|++||+.+++....+. |...|.+++|+| ++++|++|+.||.|++||++++
T Consensus 118 ~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~ 196 (321)
T 3ow8_A 118 IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATG 196 (321)
T ss_dssp EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT
T ss_pred EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence 44567778889999999 99999999999999999998887774 788999999999 9999999999999999999999
Q ss_pred eEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 462 QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 462 ~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
+.+ .+..|...|.+++|+|++++|++|+.||.|++||++++..... ...|...|++++|+| ++.+|++++
T Consensus 197 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~~~~sp-~~~~l~s~s 267 (321)
T 3ow8_A 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT--------LSGHASWVLNVAFCP-DDTHFVSSS 267 (321)
T ss_dssp EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE--------EcCCCCceEEEEECC-CCCEEEEEe
Confidence 877 5677889999999999999999999999999999998876543 234678899999999 889999999
Q ss_pred CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 541 ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.|+.|+|||..+....... ..|...|.+++|+|+|++|++++.||.|+|||+.
T Consensus 268 ~D~~v~iwd~~~~~~~~~~--~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 268 SDKSVKVWDVGTRTCVHTF--FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCcEEEEeCCCCEEEEEE--cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999887665554 6799999999999999999999999999999974
No 5
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3e-39 Score=350.56 Aligned_cols=305 Identities=19% Similarity=0.269 Sum_probs=236.0
Q ss_pred cccccccccceeeeeccCcceeecCCCCeeEEeeC------CCeEEEEECCCCcccccccccceeeecccccEEEEEEec
Q 004410 221 KRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQR------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL 294 (755)
Q Consensus 221 ~~~w~~~~~~~~~~~~~~~~~~~spdg~~lasgs~------dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp 294 (755)
.+.|..+.....+|...|.+++|+|||++||+|+. |+.|++|+......... ......+|...|.+++|+|
T Consensus 28 ~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~---~~~~~~~~~~~V~~~~~s~ 104 (357)
T 4g56_B 28 GSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES---LCTAGVQTEAGVTDVAWVS 104 (357)
T ss_dssp ------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG---GCSEEEECSSCEEEEEEET
T ss_pred ccccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee---EecccCCCCCCEEEEEEcC
Confidence 35566666666788889999999999999999997 78899998765432211 2234567999999999999
Q ss_pred CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 295 dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
++.+| +++.||+|+|||+.+++....
T Consensus 105 d~~~l-~~s~dg~v~lWd~~~~~~~~~----------------------------------------------------- 130 (357)
T 4g56_B 105 EKGIL-VASDSGAVELWEILEKESLLV----------------------------------------------------- 130 (357)
T ss_dssp TTEEE-EEETTSCEEEC--------CC-----------------------------------------------------
T ss_pred CCCEE-EEECCCEEEEeeccccceeEE-----------------------------------------------------
Confidence 98654 577899999999987653211
Q ss_pred eccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCc
Q 004410 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452 (755)
Q Consensus 375 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~ 452 (755)
......+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+|....+|++++.||+
T Consensus 131 -----~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~ 205 (357)
T 4g56_B 131 -----NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR 205 (357)
T ss_dssp -----CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC
T ss_pred -----EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc
Confidence 112345799999999999999 99999999999999999999999885 99999999999944468999999999
Q ss_pred EEEEEcCCCeEEE---eccCCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 453 VRIWEVRRCQVVD---YTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 453 V~iwdl~~~~~~~---~~~~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
|++||+++++... ...+...+++++|+|+ +.+|++|+.|+.|++||+++++.... ...+...|++++|
T Consensus 206 v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~--------~~~~~~~v~~l~~ 277 (357)
T 4g56_B 206 ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT--------SAVHSQNITGLAY 277 (357)
T ss_dssp EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE--------ECCCSSCEEEEEE
T ss_pred eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE--------EeccceeEEEEEE
Confidence 9999999887653 3456678999999997 56788999999999999998876543 2346778999999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 529 SPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS-DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 529 sp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|++..+|++++.|++|+|||..+.... .. .+|...|++++|+| ++++|++++.||.|++|++....
T Consensus 278 sp~~~~~lasgs~D~~i~iwd~~~~~~~-~~--~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 278 SYHSSPFLASISEDCTVAVLDADFSEVF-RD--LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTSCEEE-EE--CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred cCCCCCEEEEEeCCCEEEEEECCCCcEe-EE--CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9966678999999999999998875433 22 57999999999998 89999999999999999997654
No 6
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-38 Score=340.08 Aligned_cols=298 Identities=19% Similarity=0.313 Sum_probs=248.2
Q ss_pred cccccceeeeeccCcceeecCCC-CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 225 LKKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg-~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
+.....+.+|.+.|.+++|+|++ ++|++|+.|++|++|++....... ....+.+.+|...|.+++|+|+|++|++|+
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--GVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--EEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc--cccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 44556788999999999999976 799999999999999975432211 123457889999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|++|+|||+.+++. +..
T Consensus 85 ~D~~v~~wd~~~~~~--------------------------------------------------------------~~~ 102 (319)
T 3frx_A 85 WDKTLRLWDVATGET--------------------------------------------------------------YQR 102 (319)
T ss_dssp TTSEEEEEETTTTEE--------------------------------------------------------------EEE
T ss_pred CCCEEEEEECCCCCe--------------------------------------------------------------eEE
Confidence 999999999987753 344
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeC-----CCCEEEEEeCCCcEEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV-----DDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~-----d~~~l~sgs~Dg~V~iwd 457 (755)
+.+|...|.+++|+|++ +|++++.|++|++||++.........|...|.++.|.|. ++.+|++++.|+.|++||
T Consensus 103 ~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd 182 (319)
T 3frx_A 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182 (319)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEE
T ss_pred EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEE
Confidence 67899999999999999 999999999999999976554444579999999999983 234899999999999999
Q ss_pred cCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 458 VRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 458 l~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
+++.+.. .+..|...|.+++|+|+|++|++|+.||.|++||+.+++.+.... ....|.+++|+| ++.++
T Consensus 183 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~sp-~~~~l 252 (319)
T 3frx_A 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS---------AQDEVFSLAFSP-NRYWL 252 (319)
T ss_dssp TTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---------CCSCEEEEEECS-SSSEE
T ss_pred CCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEEEEEEcC-CCCEE
Confidence 9998776 577899999999999999999999999999999999988765432 235799999999 88888
Q ss_pred EEEECCCcEEEEECCcceeeEEEe------eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 537 IVTSADSLVRVLCGENVVGKFKAS------AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~~~~------~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
++++.+ .+++|+........... ...+...+.+++|+|||++|++|+.||.|+|||+.++
T Consensus 253 a~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 253 AAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 887755 59999987643322221 1234567899999999999999999999999998764
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-38 Score=343.49 Aligned_cols=297 Identities=19% Similarity=0.256 Sum_probs=253.6
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~ 304 (755)
.+..+.+.+|.+.|.+++|+|++++||+|+.||+|+||+...... .+.+..|...|.+++|+|+|.+||+|+.
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-------~~~~~~~~~~v~~~~~sp~g~~lasg~~ 126 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-------EHAVTMPCTWVMACAYAPSGCAIACGGL 126 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-------EEEEECSSSCCCEEEECTTSSEEEEEST
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-------ceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence 345567889999999999999999999999999999999765432 2456778899999999999999999999
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
|+.|++|++....... .......+
T Consensus 127 d~~i~v~~~~~~~~~~--------------------------------------------------------~~~~~~~~ 150 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNEN--------------------------------------------------------MAAKKKSV 150 (354)
T ss_dssp TSEEEEEECCCCTTCC--------------------------------------------------------SGGGCEEE
T ss_pred CCCEEEEEEecccccc--------------------------------------------------------ccccceee
Confidence 9999999985432100 00123456
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCC
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
.+|...|.+++|+|++ .|++++.|++|++||+.+++++..+. |...|.+++|+|. ++++|++|+.||+|++||++++
T Consensus 151 ~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~ 230 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230 (354)
T ss_dssp EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 6899999999999999 99999999999999999999998885 9999999999883 3689999999999999999998
Q ss_pred eEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 462 QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 462 ~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
+++ .+..|...|++++|+|++.+|++|+.|++|++||++.+....... ...+...+++++|+| ++.+|++++
T Consensus 231 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~------~~~~~~~~~~~~~s~-~g~~l~~g~ 303 (354)
T 2pbi_B 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS------KESIIFGASSVDFSL-SGRLLFAGY 303 (354)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------CTTCCSCEEEEEECT-TSSEEEEEE
T ss_pred cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc------CCCcccceeEEEEeC-CCCEEEEEE
Confidence 877 567789999999999999999999999999999999886543211 112345789999999 899999999
Q ss_pred CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 541 ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
.|+.|++||..+....... .+|...|++++|+|+|++|++|+.|+.|+||+
T Consensus 304 ~d~~i~vwd~~~~~~~~~l--~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 304 NDYTINVWDVLKGSRVSIL--FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSCEEEEETTTCSEEEEE--CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEECCCCceEEEE--ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999998776544443 68999999999999999999999999999996
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.1e-39 Score=346.29 Aligned_cols=310 Identities=20% Similarity=0.302 Sum_probs=245.3
Q ss_pred cccccceeeeec-cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 225 LKKLGAMARIID-RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 225 ~~~~~~~~~~~~-~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
+..+..+.+|.+ .+.+++|+|+|++||+|+.|++|+||+......... .....+|.+.|.+++|+|+|++||+|+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~g~~l~s~s 80 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----SVLSEGHQRTVRKVAWSPCGNYLASAS 80 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----EEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----eeeccccCCcEEEEEECCCCCEEEEEE
Confidence 345566777777 788899999999999999999999999765432111 112368999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|++|+||++..+.. ..+..
T Consensus 81 ~D~~v~iw~~~~~~~------------------------------------------------------------~~~~~ 100 (345)
T 3fm0_A 81 FDATTCIWKKNQDDF------------------------------------------------------------ECVTT 100 (345)
T ss_dssp TTSCEEEEEECCC-E------------------------------------------------------------EEEEE
T ss_pred CCCcEEEEEccCCCe------------------------------------------------------------EEEEE
Confidence 999999999865431 11345
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe---EEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR---CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~---~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
+.+|...|.+++|+|++ +|++++.|++|++||+.++. ++..+ .|...|.+++|+| ++++|++|+.|+.|++||+
T Consensus 101 ~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~ 179 (345)
T 3fm0_A 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYRE 179 (345)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEE
T ss_pred ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEe
Confidence 77899999999999999 99999999999999998763 44444 4899999999999 9999999999999999999
Q ss_pred CCCeEE---EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeee--------eEEecccccCCCCCeEEEE
Q 004410 459 RRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN--------QICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 459 ~~~~~~---~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~--------~~~~~~~~~~~~~~I~~v~ 527 (755)
+++... .+..|...|++++|+|+|++|++|+.||+|++||+......... ..++......|...|++++
T Consensus 180 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 259 (345)
T 3fm0_A 180 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259 (345)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEE
T ss_pred cCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEE
Confidence 887533 57789999999999999999999999999999997432111000 0001111223678899999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcce----ee--EEE-eeeccCCceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCCc
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVV----GK--FKA-SAFRVAGSQMFATFTSDG-KHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~----~~--~~~-~~~~~~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
|+| ++..|++++.|+.|++|+..... .. +.. ...+|...|++++|+|++ .+|++|+.||.|+||++.++++
T Consensus 260 ~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 260 WCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp ECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred Eec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 999 88899999999999999975421 11 111 124688999999999998 5999999999999999998774
Q ss_pred c
Q 004410 600 S 600 (755)
Q Consensus 600 ~ 600 (755)
.
T Consensus 339 ~ 339 (345)
T 3fm0_A 339 L 339 (345)
T ss_dssp -
T ss_pred c
Confidence 3
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.9e-39 Score=345.75 Aligned_cols=305 Identities=17% Similarity=0.179 Sum_probs=235.1
Q ss_pred cccccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCc----ccccccccceeeecccccEEEEEEecCCCE
Q 004410 223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS----RELSSLYTGQEFLAHEGSILTMKFSLDGQY 298 (755)
Q Consensus 223 ~w~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~----~~~~~~~~~~~l~~H~~~V~~l~fspdg~~ 298 (755)
.|..+.....++...+.+++|+|||++|++++ |+++++|+..... ..............|...|.+++|+|++ .
T Consensus 18 ~w~~~~~~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 18 EWNLPPNAPACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp -----CCSCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred ccCCCCCCcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 34333333444556678899999999999877 6677777632110 0000111112234577889999999985 6
Q ss_pred EEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 299 LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
|++|+.||+|+|||+.+++.+..+
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~-------------------------------------------------------- 119 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVS-------------------------------------------------------- 119 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEE--------------------------------------------------------
T ss_pred EEEEECCCEEEEEeccCCCceeEe--------------------------------------------------------
Confidence 889999999999999887643211
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
...+.+|...|++++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+|.+..+|++|+.|++|++|
T Consensus 120 --~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw 197 (344)
T 4gqb_B 120 --KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197 (344)
T ss_dssp --EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred --eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccc
Confidence 12356899999999999999 99999999999999999999999985 999999999999445689999999999999
Q ss_pred EcCCCeEEEe---ccCCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 457 EVRRCQVVDY---TDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 457 dl~~~~~~~~---~~~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
|+++++.... ..+...+++++|+|+ +++|++|+.||.|++||+++++.+.. ...|...|++++|+|++
T Consensus 198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~--------~~~h~~~v~~v~fsp~g 269 (344)
T 4gqb_B 198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS--------SAVHSQCVTGLVFSPHS 269 (344)
T ss_dssp ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE--------EECCSSCEEEEEECSSS
T ss_pred cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE--------EcCCCCCEEEEEEccCC
Confidence 9999876643 344567999999995 56788999999999999999887653 23467899999999955
Q ss_pred CCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..+|++++.|++|+|||...... +. ..+|...|++++|+|+++ +|++++.|++|++|++.+..
T Consensus 270 ~~~lasgs~D~~i~vwd~~~~~~-~~--~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 270 VPFLASLSEDCSLAVLDSSLSEL-FR--SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SCCEEEEETTSCEEEECTTCCEE-EE--ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CeEEEEEeCCCeEEEEECCCCcE-EE--EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 57899999999999999887542 22 378999999999999986 56799999999999998754
No 10
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.2e-38 Score=360.05 Aligned_cols=336 Identities=23% Similarity=0.342 Sum_probs=271.0
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+.+|.+.|.+++|+|||++||+|+.|+.|+|||... ...+++.+|.+.|++|+|+|||++||+++.|++|+
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~--------~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~ 82 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 82 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC--------CEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 3778999999999999999999999999999999532 23457899999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecC-----------------------------cc---------
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-----------------------------EK--------- 351 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------------~~--------- 351 (755)
|||+ +++.+..+..+...+.++.|.++.... +....+. ..
T Consensus 83 vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (577)
T 2ymu_A 83 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160 (577)
T ss_dssp EEET-TSCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEC-CCCEEEEEECCCCCEEEEEECCCCCEE-EEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccc
Confidence 9996 567777887777777777776654321 1110000 00
Q ss_pred ----------------------e-------eeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-e
Q 004410 352 ----------------------I-------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F 401 (755)
Q Consensus 352 ----------------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~ 401 (755)
+ .....+.++.++.+.+|+ ...+.+..+.+|...|.+++|+|++ .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~-----~~~~~~~~~~~~~~~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRGVAFSPDGQT 235 (577)
T ss_dssp SEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC-----TTSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred cceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEe-----CCCcEEEEEecCCCCEEEEEECCCCCE
Confidence 0 000112233344444444 3356677889999999999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc
Q 004410 402 LLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (755)
Q Consensus 402 L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp 480 (755)
|++++.|+.|++||.. ++.+..+ .|...|++++|+| ++++|++++.|+.|++||........+..|...|.+++|+|
T Consensus 236 l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~ 313 (577)
T 2ymu_A 236 IASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 313 (577)
T ss_dssp EEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECT
T ss_pred EEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECC
Confidence 9999999999999975 4555555 5999999999999 99999999999999999987766667888999999999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe
Q 004410 481 DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 481 dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 560 (755)
+++.|++++.||.|++||+....+.. ...+...|++++|+| ++.+|++++.|+.|++|+.... . ...
T Consensus 314 ~~~~l~t~~~d~~i~~w~~~~~~~~~---------~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~-~--~~~ 380 (577)
T 2ymu_A 314 DGQTIASASDDKTVKLWNRNGQHLQT---------LTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-L--LQT 380 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTCC-E--EEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEE---------EeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCC-E--EEE
Confidence 99999999999999999988765432 234667899999999 8999999999999999996432 2 222
Q ss_pred eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 561 AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 561 ~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
...|...|.+++|+|+|++|++++.|+.|++||..
T Consensus 381 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 36788999999999999999999999999999964
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-39 Score=355.11 Aligned_cols=308 Identities=21% Similarity=0.299 Sum_probs=256.5
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
..+.+.+|.+.|.+++|+|++++|++|+.|++|+||+..... ....+.+|...|.+++|+|+|++||+|+.|+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-------KTHAIKLHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-------EEEEEECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------cceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 445688899999999999999999999999999999976543 2346788999999999999999999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|+||++.+...... .......+.+
T Consensus 131 ~v~iw~~~~~~~~~~-------------------------------------------------------~~~~~~~~~g 155 (380)
T 3iz6_a 131 ACSIFNLSSQADRDG-------------------------------------------------------NMPVSRVLTG 155 (380)
T ss_dssp CCEEEECCCCSSCCC-------------------------------------------------------SSTTCCBCCC
T ss_pred cEEEEECCCCccccC-------------------------------------------------------CccceeeccC
Confidence 999999865421000 0012345678
Q ss_pred CCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE------ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 387 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~------~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
|.+.|.++.|+|++ .|++++.|++|++||+.+++++..+ .|...|.+++|+|.++++|++|+.|++|++||+
T Consensus 156 h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~ 235 (380)
T 3iz6_a 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235 (380)
T ss_dssp CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence 99999999999975 7999999999999999999999887 388899999998878899999999999999999
Q ss_pred CC-Ce-EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 459 RR-CQ-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 459 ~~-~~-~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
+. .+ +..+..|...|++++|+|++++|++|+.||+|++||++++..+....... .....+...|++++|+| ++.+|
T Consensus 236 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-~g~~l 313 (380)
T 3iz6_a 236 RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP-DRNDNELPIVTSVAFSI-SGRLL 313 (380)
T ss_dssp TTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC-SSSCCSSCSCSEEEECS-SSSEE
T ss_pred CCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc-cccccccCceEEEEECC-CCCEE
Confidence 84 33 33677899999999999999999999999999999999998765432211 11112234589999999 89999
Q ss_pred EEEECCCcEEEEECCcceeeEEE--eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 537 IVTSADSLVRVLCGENVVGKFKA--SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~~~--~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++++.|+.|++||.......... ....|.+.|++++|+|+|++|++|+.|+.|+||++...+
T Consensus 314 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 314 FAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999998765544332 114688999999999999999999999999999998765
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-38 Score=341.07 Aligned_cols=300 Identities=19% Similarity=0.266 Sum_probs=242.3
Q ss_pred cccccceeeeeccCcceee-----cC-CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCE
Q 004410 225 LKKLGAMARIIDRHGSATL-----KP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~-----sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~ 298 (755)
......+.+|.+.|.+++| +| ++++|++|+.|++|+||++...............+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 3455678889999999999 76 99999999999999999986543211112234568899999999999999999
Q ss_pred EEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 299 LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
|++|+.|++|+|||+.+++.
T Consensus 91 l~s~s~D~~v~lwd~~~~~~------------------------------------------------------------ 110 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTT------------------------------------------------------------ 110 (343)
T ss_dssp EEEEETTSEEEEEETTSSCE------------------------------------------------------------
T ss_pred EEEEcCCCcEEEEECCCCcE------------------------------------------------------------
Confidence 99999999999999977643
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeCCC----------CEE
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDD----------NYF 444 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~d~----------~~l 444 (755)
+..+.+|...|.+++|+|++ +|++++.|++|++||+......... .|...|.+++|+| ++ .+|
T Consensus 111 --~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l 187 (343)
T 2xzm_R 111 --YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYF 187 (343)
T ss_dssp --EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEE
T ss_pred --EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEE
Confidence 34567899999999999999 9999999999999999854443333 4888999999999 55 799
Q ss_pred EEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 445 ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
++++.|+.|++||........+..|...|.+++|+|+|++|++|+.||.|++||+........ ...+...|+
T Consensus 188 ~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~--------~~~~~~~v~ 259 (343)
T 2xzm_R 188 ASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR--------EFDAGSTIN 259 (343)
T ss_dssp EEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE--------EEECSSCEE
T ss_pred EEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce--------eecCCCcEE
Confidence 999999999999965555557788999999999999999999999999999999954332111 011345799
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCcceeeE--EEe---------eeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF--KAS---------AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~--~~~---------~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+++|+| ++.+++ ++.|+.|++|+..+..... ... ..+|...|.+++|+|+|++|++|+.||.|++|+
T Consensus 260 ~v~~sp-~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 260 QIAFNP-KLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp EEEECS-SSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred EEEECC-CCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 999999 777665 4568889999987643322 111 015777899999999999999999999999999
Q ss_pred cCCC
Q 004410 594 YSNQ 597 (755)
Q Consensus 594 ~~~~ 597 (755)
+.++
T Consensus 338 ~~~g 341 (343)
T 2xzm_R 338 FETS 341 (343)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 8765
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.5e-38 Score=367.16 Aligned_cols=348 Identities=18% Similarity=0.246 Sum_probs=268.5
Q ss_pred ccceeeeeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 228 LGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
...+.+|...+.+++|+|++. .|++|+.|++|++|+.... ...+.+.+|.+.|++++|+|||++||+|+.|+
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-------~~~~~l~~H~~~V~~v~fspdg~~las~s~D~ 212 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-------KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-------EEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-------eEeeeeccccCceEEEEECCCCCEEEEEECCC
Confidence 345678888999999999997 5999999999999996542 23456889999999999999999999999999
Q ss_pred cEEEEEccCCeeeeeee-------cCCCCCceeEEeeCCCC--------ceeEEeecCcceee-----------------
Q 004410 307 TVRVWKVIEHERLDGFD-------VQDTDPSCLYFTINHLS--------QLIPIDVDKEKIDK----------------- 354 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~----------------- 354 (755)
+|+|||+.+++.+..+. .+...+.++.|.++... .+..++........
T Consensus 213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 99999999998877763 45556667777665421 11222222111110
Q ss_pred --eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE------
Q 004410 355 --TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF------ 425 (755)
Q Consensus 355 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~------ 425 (755)
...+..+.++.+.+|+... ..+...+.+|...|.+++|+|++ +|++++.|++|++||+.++++...+
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~----~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPEL----GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTT----TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred cCCEEEEEeCCCcEEEEeCCC----CCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 0112223344444444322 22456778999999999999999 9999999999999999876543321
Q ss_pred -----------------------------------------------------------------------------ecC
Q 004410 426 -----------------------------------------------------------------------------SHN 428 (755)
Q Consensus 426 -----------------------------------------------------------------------------~h~ 428 (755)
.|.
T Consensus 369 ~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 369 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence 123
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC-CeEe
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD-NQLY 505 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~-~~~~ 505 (755)
..+.+++|+| ++++|++|+.|++|++||+.++... ....|...|++++|+|||++|++++.|++|++||+.+ +++.
T Consensus 449 ~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~ 527 (611)
T 1nr0_A 449 YNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA 527 (611)
T ss_dssp SCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred CCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCcee
Confidence 4578899999 9999999999999999999887542 3467889999999999999999999999999999987 5443
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeecc-CCceEEEEEecCCCEEEEEe
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRV-AGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~v~~l~fspdg~~L~sgs 584 (755)
.. .....|...|++++|+| ++++|++++.|++|+||+.............+| ...|.+++|+|+++ |++++
T Consensus 528 ~~------~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~ 599 (611)
T 1nr0_A 528 HT------NSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAG 599 (611)
T ss_dssp CC------CCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEE
T ss_pred ee------eeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEec
Confidence 21 01223778999999999 899999999999999999886543321222567 78999999999998 99999
Q ss_pred CCCcEEEEEcC
Q 004410 585 EDSNIYIWNYS 595 (755)
Q Consensus 585 ~Dg~I~iWd~~ 595 (755)
.|++|++|++.
T Consensus 600 ~D~~i~lW~~~ 610 (611)
T 1nr0_A 600 QDSNIKFWNVP 610 (611)
T ss_dssp TTSCEEEEECC
T ss_pred CCCCEEEEecc
Confidence 99999999973
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.3e-38 Score=331.14 Aligned_cols=290 Identities=19% Similarity=0.248 Sum_probs=245.2
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
..+++.+|.+.|.+++|+|++++|++|+.||+|+||++.... ..+.+.+|...|.+++|+|++++|++|+.|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 77 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------eeEEeeccCCcEEEEEEeCCCCEEEEECCCC
Confidence 345688899999999999999999999999999999986543 2356788999999999999999999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+|+|||+.+++. +..+.+
T Consensus 78 ~i~vwd~~~~~~--------------------------------------------------------------~~~~~~ 95 (304)
T 2ynn_A 78 RIRVFNYNTGEK--------------------------------------------------------------VVDFEA 95 (304)
T ss_dssp EEEEEETTTCCE--------------------------------------------------------------EEEEEC
T ss_pred EEEEEECCCCcE--------------------------------------------------------------EEEEeC
Confidence 999999987653 345678
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-eEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~-~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
|...|.+++|+|++ +|++++.|++|++||+.++ .+...+ .|...|++++|+|.++.+|++|+.|++|++||+++...
T Consensus 96 h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~ 175 (304)
T 2ynn_A 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC
T ss_pred CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 99999999999999 9999999999999999887 444555 59999999999996788999999999999999987653
Q ss_pred E--EeccCCcceEEEEEcc--CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 464 V--DYTDIREIVSAVCYCP--DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 464 ~--~~~~~~~~V~~v~~sp--dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
. ....+...+..++|+| ++.+|++|+.||+|++||+++++.+..+ ..|...|+.++|+| ++.+|+++
T Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~--------~~h~~~v~~~~~~p-~~~~l~s~ 246 (304)
T 2ynn_A 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL--------EGHMSNVSFAVFHP-TLPIIISG 246 (304)
T ss_dssp SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEECS-SSSEEEEE
T ss_pred cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee--------CCCCCCEEEEEECC-CCCEEEEE
Confidence 3 3345667899999987 7789999999999999999998876542 34678899999999 88999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC--EEEEEeCCCcEEEEEcCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK--HVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~--~L~sgs~Dg~I~iWd~~~~ 597 (755)
+.|++|+|||..+....... ..+...+.+++|+|++. +|++|+. ..+.+|++.+.
T Consensus 247 s~Dg~i~iWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~~~~ 303 (304)
T 2ynn_A 247 SEDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFD-NGFTVLSLGND 303 (304)
T ss_dssp ETTSCEEEEETTTCCEEEEE--CCSSSSEEEEEECTTCGGGCEEEEET-TEEEEEECC--
T ss_pred cCCCeEEEEECCCCceeeec--cCCCccEEEEEECCCCCceEEEEecC-CceEEEEeccC
Confidence 99999999999876555444 56788999999999885 5676665 46888887653
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-37 Score=328.83 Aligned_cols=305 Identities=19% Similarity=0.280 Sum_probs=230.9
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceee-ec-ccccEEEEEEecCCCEEEEEcC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LA-HEGSILTMKFSLDGQYLASGGE 304 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l-~~-H~~~V~~l~fspdg~~LaSgs~ 304 (755)
.+..+.+|.+.+.+++|+|+ +||+|+.|++|+||++...... ....+ .+ |.+.|.+++|+|++++||+|+.
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 78 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-----LIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-----EEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-----EEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence 34567788899999999998 9999999999999998753211 12233 34 9999999999999999999999
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
|++|+||++....... ....++..+
T Consensus 79 D~~v~iw~~~~~~~~~-------------------------------------------------------~~~~~~~~~ 103 (330)
T 2hes_X 79 DSTVSIWAKEESADRT-------------------------------------------------------FEMDLLAII 103 (330)
T ss_dssp TSCEEEEEC--------------------------------------------------------------CCCEEEEEE
T ss_pred CCcEEEEEcccCcCcc-------------------------------------------------------ccceeEEEE
Confidence 9999999985431000 001224567
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC----CeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI----DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s----~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
.+|...|.+++|+|++ +|++++.|++|++||+.. .+++..+ .|...|++++|+| ++.+|++|+.|++|++||+
T Consensus 104 ~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~ 182 (330)
T 2hes_X 104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKD 182 (330)
T ss_dssp C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEEC
Confidence 8999999999999999 999999999999999943 2566666 4999999999999 9999999999999999999
Q ss_pred CCC--eEE-EeccCCcceEEEEEccC--CCeEEEEeCCCcEEEEECCCCeEeeeeeE-EecccccCCCCCeEEEEEcCCC
Q 004410 459 RRC--QVV-DYTDIREIVSAVCYCPD--GKGGIVGTMTGNCRFYDIKDNQLYQQNQI-CLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 459 ~~~--~~~-~~~~~~~~V~~v~~spd--g~~la~gs~dg~I~iwD~~~~~~~~~~~~-~~~~~~~~~~~~I~~v~fsp~d 532 (755)
.++ +++ .+..|...|.+++|+|+ +..|++|+.|++|++||+.++........ ........|...|++++|++ +
T Consensus 183 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~ 261 (330)
T 2hes_X 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-N 261 (330)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-T
T ss_pred CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-C
Confidence 876 333 57789999999999998 77899999999999999875421000000 01111123678899999997 4
Q ss_pred CCEEEEEECCCcEEEEECCcceeeE-EEeeeccCC-ceEEEEEec--CCCEEEEEeCCCcEEEEEcCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKF-KASAFRVAG-SQMFATFTS--DGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~-~v~~l~fsp--dg~~L~sgs~Dg~I~iWd~~~ 596 (755)
.+|++++.|+.|+||+..+..... ......|.. .|.+++|+| ++++|++|+.||.|+||++..
T Consensus 262 -~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 262 -GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred -CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 489999999999999987653222 222245666 899999999 789999999999999999864
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-36 Score=322.16 Aligned_cols=290 Identities=22% Similarity=0.345 Sum_probs=246.6
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
...+.+|.+.+.+++|+|++++|++|+.||.|+||+..... ..+.+.+|...|.+++|+|++++|++++.|+.
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-------cchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence 44577888899999999999999999999999999976543 23467899999999999999999999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|+|||+.+++. +..+.+|
T Consensus 89 i~vwd~~~~~~--------------------------------------------------------------~~~~~~~ 106 (312)
T 4ery_A 89 LKIWDVSSGKC--------------------------------------------------------------LKTLKGH 106 (312)
T ss_dssp EEEEETTTCCE--------------------------------------------------------------EEEEECC
T ss_pred EEEEECCCCcE--------------------------------------------------------------EEEEcCC
Confidence 99999977643 3445679
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++++.||.|++||+++++.+.
T Consensus 107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~ 185 (312)
T 4ery_A 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLK 185 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceee
Confidence 9999999999999 99999999999999999999988885 889999999999 99999999999999999999988764
Q ss_pred e--ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 466 Y--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 466 ~--~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
. ..+...+..++|+|++++|++++.||.|++||+++++...... ++. .........+++.++.+|++++.|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~l~sg~~dg 259 (312)
T 4ery_A 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT----GHK--NEKYCIFANFSVTGGKWIVSGSEDN 259 (312)
T ss_dssp EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC----SSC--CSSSCCCEEEECSSSCEEEECCTTS
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE----ecC--CceEEEEEEEEeCCCcEEEEECCCC
Confidence 2 3456689999999999999999999999999999988765322 111 1112223445554889999999999
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe--CCCcEEEEEcC
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS--EDSNIYIWNYS 595 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs--~Dg~I~iWd~~ 595 (755)
.|++||..+....... .+|...|.+++|+|++.+|++++ .|+.|++|+.+
T Consensus 260 ~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 260 LVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEETTTCCEEEEE--CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEECCCchhhhhh--hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999876554444 67999999999999999999997 69999999964
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.8e-37 Score=335.14 Aligned_cols=298 Identities=21% Similarity=0.322 Sum_probs=241.1
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccc------------eeeecccccEEEEEEecCCCEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTG------------QEFLAHEGSILTMKFSLDGQYLA 300 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~------------~~l~~H~~~V~~l~fspdg~~La 300 (755)
.|...+.+++|+|+|++||+|+ ++.++||++..+..... +... .....+...|.+++|+|||++||
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE-ECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE-ecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 5778899999999999999987 68999999876543211 1000 00012334599999999999999
Q ss_pred EEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
+|+.|+.|+|||+.+++.
T Consensus 140 s~~~d~~i~iwd~~~~~~-------------------------------------------------------------- 157 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKI-------------------------------------------------------------- 157 (393)
T ss_dssp EEETTSCEEEEETTTTEE--------------------------------------------------------------
T ss_pred EEcCCCeEEEEECCCCcE--------------------------------------------------------------
Confidence 999999999999977643
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
+..+.+|...|.+++|+|++ +|++++.|++|++||+.++++...+.+...+.+++|+|.++++|++|+.|+.|++||++
T Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~ 237 (393)
T 1erj_A 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237 (393)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 34467899999999999999 99999999999999999999999999999999999999788999999999999999999
Q ss_pred CCeEEEe--------ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE----ecccccCCCCCeEEEE
Q 004410 460 RCQVVDY--------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC----LQGKKKLPGKRITGFQ 527 (755)
Q Consensus 460 ~~~~~~~--------~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~----~~~~~~~~~~~I~~v~ 527 (755)
++..+.. ..|...|++++|+|+|++|++|+.||.|++||+++.......... .......|...|.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 317 (393)
T 1erj_A 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317 (393)
T ss_dssp TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEE
Confidence 9877632 468889999999999999999999999999999875432211100 0011234677899999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec------CCCEEEEEeCCCcEEEEEcCCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS------DGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp------dg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
|+| ++.+|++++.|+.|++||..+....... .+|...|.+++|++ ++.+|++|+.||.|+||++...
T Consensus 318 ~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l--~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 318 TTQ-NDEYILSGSKDRGVLFWDKKSGNPLLML--QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECG-GGCEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCeEEEEE--CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999 8899999999999999999876655444 67999999999986 6889999999999999998654
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.5e-36 Score=346.83 Aligned_cols=321 Identities=25% Similarity=0.369 Sum_probs=264.4
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
+..+.+|...+.+++|+|+++.|++++.|+.|++|+.... ..+.+.+|.+.|++++|+|++++|++++.|+.
T Consensus 255 ~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 326 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------EEEEEecCCCCeEEEEECCCCCEEEEEeCCCe
Confidence 3445667777888999999999999999999999996432 23467899999999999999999999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|++|++... .+..+..+...+.++.+.++.. ....+..++.+.+|+. ..+.+..+.+|
T Consensus 327 i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~----------------~l~~~~~dg~v~~~~~-----~~~~~~~~~~~ 384 (577)
T 2ymu_A 327 VKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQ----------------TIASASDDKTVKLWNR-----NGQLLQTLTGH 384 (577)
T ss_dssp EEEEETTSC-EEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEET-----TCCEEEEEECC
T ss_pred EEEEeCCCC-eeEEEeCCCCCEEEEEECCCCC----------------EEEEEeCCCEEEEEcC-----CCCEEEEecCC
Confidence 999997654 3445555555555555554432 1233445666666653 34567788999
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
...|.+++|+|++ +|++++.|+.|++||.. ++.+..+ .|...|++++|+| ++++|++++.|+.|++||+....+..
T Consensus 385 ~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~~~~~~ 462 (577)
T 2ymu_A 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLLQT 462 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCCCEEEE
Confidence 9999999999999 99999999999999964 5555555 5999999999999 99999999999999999987766668
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
+..|...|++++|+|++++|++++.|+.|++||.. ++.+.. ...|...|++++|+| ++++|++++.|+.|
T Consensus 463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~~--------~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT--------LTGHSSSVRGVAFSP-DGQTIASASDDKTV 532 (577)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEEEE--------EECCSSCEEEEEECT-TSSCEEEEETTSEE
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEEEE--------EeCCCCCEEEEEEcC-CCCEEEEEECcCEE
Confidence 88999999999999999999999999999999964 444432 234678999999999 89999999999999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+|||... .. .....+|...|++++|+|||++|+|++.|++|++||
T Consensus 533 ~lwd~~~-~~--~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 533 KLWNRNG-QL--LQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECTTS-CE--EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEeCCC-CE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999643 22 223367999999999999999999999999999997
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2e-35 Score=315.85 Aligned_cols=295 Identities=20% Similarity=0.337 Sum_probs=243.5
Q ss_pred cceeeeeccCcceeecCC-CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 229 GAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
.++.+|.+.|.+++|+|+ +++||+|+.|++|+||++...... .....+.+.+|.+.|.+++|+|+|++|++++.|+.
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC--SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--cceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 468899999999999998 579999999999999998764432 12344678899999999999999999999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|++|+....... .....+
T Consensus 110 i~~~~~~~~~~~--------------------------------------------------------------~~~~~~ 127 (340)
T 4aow_A 110 LRLWDLTTGTTT--------------------------------------------------------------RRFVGH 127 (340)
T ss_dssp EEEEETTTTEEE--------------------------------------------------------------EEEECC
T ss_pred ceEEeeccccee--------------------------------------------------------------eeecCC
Confidence 999998766432 223446
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCC-CCEEEEEeCCCcEEEEEcCCCeE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d-~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
...+..+.+++++ .|++++.|+.+++||+......... .|...|.+++|++.. ..++++++.|+.|++||+++++.
T Consensus 128 ~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~ 207 (340)
T 4aow_A 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207 (340)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE
T ss_pred CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce
Confidence 6778888999988 9999999999999999877665443 488999999998832 35788999999999999999987
Q ss_pred E-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 464 ~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+ .+..|...|++++|+|++++|++|+.||.|++||+++.+.+.... +...|..+.|+| ++. +++++.|
T Consensus 208 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~-~~~-~~~~~~d 276 (340)
T 4aow_A 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD---------GGDIINALCFSP-NRY-WLCAATG 276 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---------CSSCEEEEEECS-SSS-EEEEEET
T ss_pred eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec---------CCceEEeeecCC-CCc-eeeccCC
Confidence 7 567889999999999999999999999999999999988765322 245799999999 554 5566779
Q ss_pred CcEEEEECCcceeeEEE-------eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKA-------SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~-------~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|+|||.......... ....|...|++++|+|||++|++|+.||.|+|||+.+|.
T Consensus 277 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999998765433222 124578899999999999999999999999999999885
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-35 Score=312.74 Aligned_cols=251 Identities=18% Similarity=0.279 Sum_probs=220.4
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+++.+|.+.|.+++|+|++++|++|+.||+|+|||+.++..
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~------------------------------------- 47 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE------------------------------------- 47 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------------------------------
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------------------------------------
Confidence 4567899999999999999999999999999999999987653
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEE
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS 433 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~ 433 (755)
+..+.+|...|.+++|++++ +|++++.|++|++||+.+++++..+. |...|++
T Consensus 48 -------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 102 (304)
T 2ynn_A 48 -------------------------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRS 102 (304)
T ss_dssp -------------------------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred -------------------------eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence 33456788999999999999 99999999999999999999988885 9999999
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEEcCCCe-EE-EeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeE
Q 004410 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VV-DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-~~-~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~ 510 (755)
++|+| ++.+|++|+.|++|++||++++. +. .+..|...|.+++|+| ++..|++|+.||+|++||+.........
T Consensus 103 ~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~-- 179 (304)
T 2ynn_A 103 IAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL-- 179 (304)
T ss_dssp EEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE--
T ss_pred EEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee--
Confidence 99999 99999999999999999999874 33 5678999999999999 6789999999999999999876644321
Q ss_pred EecccccCCCCCeEEEEEcCC-CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcE
Q 004410 511 CLQGKKKLPGKRITGFQFSPS-DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNI 589 (755)
Q Consensus 511 ~~~~~~~~~~~~I~~v~fsp~-d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I 589 (755)
...+...+..+.|+|. ++.+|++++.|+.|++||..+....... .+|...|.+++|+|++++|++|+.||.|
T Consensus 180 -----~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~Dg~i 252 (304)
T 2ynn_A 180 -----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL--EGHMSNVSFAVFHPTLPIIISGSEDGTL 252 (304)
T ss_dssp -----ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred -----ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee--CCCCCCEEEEEECCCCCEEEEEcCCCeE
Confidence 1234567899999873 5679999999999999999886655554 7799999999999999999999999999
Q ss_pred EEEEcCCCC
Q 004410 590 YIWNYSNQD 598 (755)
Q Consensus 590 ~iWd~~~~~ 598 (755)
+|||+.+++
T Consensus 253 ~iWd~~~~~ 261 (304)
T 2ynn_A 253 KIWNSSTYK 261 (304)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 999998876
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.3e-36 Score=324.99 Aligned_cols=279 Identities=16% Similarity=0.198 Sum_probs=203.2
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC------CCcEEEEEcc
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE------DGTVRVWKVI 314 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~------Dg~I~vWdv~ 314 (755)
+.+.+++.++. +..+.....|++... ...+|++.|.+++|||||++||+|+. |+.|++|+..
T Consensus 11 ~d~g~~~~~~~-~~g~~~~~~w~~p~~-----------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~ 78 (357)
T 4g56_B 11 VDLGTENLYFQ-SNGSSKGSAWGRPVT-----------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP 78 (357)
T ss_dssp -----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC
T ss_pred CCCCccceEEe-cCCCccccccCCCCC-----------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC
Confidence 55556665544 444567788885421 23469999999999999999999997 5667777765
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
++.... .......+|...|.++
T Consensus 79 ~~~~~~----------------------------------------------------------~~~~~~~~~~~~V~~~ 100 (357)
T 4g56_B 79 EGAPNE----------------------------------------------------------SLCTAGVQTEAGVTDV 100 (357)
T ss_dssp C---CG----------------------------------------------------------GGCSEEEECSSCEEEE
T ss_pred CCCcce----------------------------------------------------------eEecccCCCCCCEEEE
Confidence 553211 1123345688999999
Q ss_pred EEcCCCeEEEEeCCCcEEEEeCCCCeEEEE-----EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Eecc
Q 004410 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRV-----FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTD 468 (755)
Q Consensus 395 ~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~-----~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~ 468 (755)
+|+|++.+++++.||+|+|||+.+++.+.. ..|...|++++|+| ++++|++|+.|+.|++||+.+++++ .+..
T Consensus 101 ~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 101 AWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp EEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 999999888899999999999998876532 24899999999999 9999999999999999999999877 5678
Q ss_pred CCcceEEEEEccCCC-eEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 469 IREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 469 ~~~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
|...|++++|+|++. .+++++.||.|++||+++++...... ...+...+++++|+|+++.+|++++.|+.|++
T Consensus 180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~ 253 (357)
T 4g56_B 180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID------FCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253 (357)
T ss_dssp CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee------eccccccccchhhhhcccceEEEeecccceeE
Confidence 899999999999875 78899999999999999887654221 23356679999999977889999999999999
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDG-KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
||+.+....... ..|...|++++|+|++ ++|++|+.|++|+|||+.+++
T Consensus 254 wd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 254 VNIKNPDSAQTS--AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp EESSCGGGCEEE--CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred EECCCCcEeEEE--eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 999886655554 6788999999999987 579999999999999987654
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-34 Score=309.44 Aligned_cols=283 Identities=18% Similarity=0.302 Sum_probs=247.2
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeee--cccccEEEEEEecCCCEEEEEcCCCcEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~--~H~~~V~~l~fspdg~~LaSgs~Dg~I~v 310 (755)
.|...+.+++|+|++++|++++ ||.|+||++....... ....+. +|...|.+++|+|++++|++++.||.|++
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS----PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS----CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee----eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 5677889999999999999999 9999999987643211 112233 79999999999999999999999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.+++.. ....+.+|...
T Consensus 124 ~d~~~~~~~------------------------------------------------------------~~~~~~~~~~~ 143 (337)
T 1gxr_A 124 WDLAAPTPR------------------------------------------------------------IKAELTSSAPA 143 (337)
T ss_dssp EECCCC--E------------------------------------------------------------EEEEEECSSSC
T ss_pred EECCCCCcc------------------------------------------------------------eeeecccCCCc
Confidence 998765411 13345678899
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~ 468 (755)
|.+++|+|++ +|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.||.|++||+++++.+....
T Consensus 144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 222 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD 222 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec
Confidence 9999999999 99999999999999999999988885 899999999999 99999999999999999999999887778
Q ss_pred CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
+...+.+++|+|++++|++++.+|.|++||+.++.... ...+...|++++|+| ++.+|++++.|+.|++|
T Consensus 223 ~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---------EcCCccceeEEEECC-CCCEEEEecCCCcEEEE
Confidence 88999999999999999999999999999999886532 234677899999999 89999999999999999
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+..+...... ..|...+.+++|+|++++|++++.||.|++|++
T Consensus 293 ~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 293 RTPYGASIFQ---SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ETTTCCEEEE---EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ECCCCeEEEE---ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9987655533 457889999999999999999999999999997
No 23
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=324.06 Aligned_cols=328 Identities=15% Similarity=0.222 Sum_probs=260.0
Q ss_pred eeccCcceeecCCCC-eeEEeeCCCeEEEEEC----CCCcc-----ccccc----ccceeeecccccEEEEEEecCCCEE
Q 004410 234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPV----KKQSR-----ELSSL----YTGQEFLAHEGSILTMKFSLDGQYL 299 (755)
Q Consensus 234 ~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~----~~~~~-----~~~~~----~~~~~l~~H~~~V~~l~fspdg~~L 299 (755)
|.+.+.+++|+|+++ +||+|+.||.|+||++ ..... ....+ .......+|.+.|.+++|+|++++|
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 347899999999999 9999999999999998 54441 01100 0001122378899999999999999
Q ss_pred EEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCc
Q 004410 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (755)
Q Consensus 300 aSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (755)
++++.||.|+||+ .+++.+..+..+...+.++.|.++.. .++..+.++.+.+|+... .+
T Consensus 124 ~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~iwd~~~----~~ 182 (425)
T 1r5m_A 124 VTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGT----------------HIISMDVENVTILWNVIS----GT 182 (425)
T ss_dssp EEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSS----------------EEEEEETTCCEEEEETTT----TE
T ss_pred EEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCC----------------EEEEEecCCeEEEEECCC----Cc
Confidence 9999999999999 67777777777766667777665432 122344556666666543 23
Q ss_pred cceEecCCCCC---------------EEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCE
Q 004410 380 PLHEFQGHSSE---------------VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 380 ~~~~~~gh~~~---------------V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~ 443 (755)
.+..+..|... +.+++|++++.+++++.|+.|++||+.+++.+..+ .|...|++++|+| ++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 261 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKL 261 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCE
Confidence 44555666555 99999999999999999999999999999888777 4899999999999 9999
Q ss_pred EEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCC
Q 004410 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
|++++.|+.|++||+++++.+ .+..|...|.+++|+|++ .|++++.||.|++||+.+++.+... ..+...
T Consensus 262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~ 332 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS--------IVDGVP 332 (425)
T ss_dssp EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE--------ECTTCC
T ss_pred EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec--------ccCCcc
Confidence 999999999999999987765 456688999999999999 9999999999999999998876532 235678
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCcce--------------------eeEEEeeeccCC--ceEEEEEecCCCEE
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENVV--------------------GKFKASAFRVAG--SQMFATFTSDGKHV 580 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~--------------------~~~~~~~~~~~~--~v~~l~fspdg~~L 580 (755)
|++++|+| ++.+|++++.|+.|++||..+.. .... ...|.. .|++++|+|++++|
T Consensus 333 i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l 409 (425)
T 1r5m_A 333 IFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS--YQSSQDNDYIFDLSWNCAGNKI 409 (425)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEE--ECCTTCCCCEEEEEECTTSSEE
T ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhh--hcCcccCCceEEEEccCCCceE
Confidence 99999999 89999999999999999988755 2222 255655 99999999999999
Q ss_pred EEEeCCCcEEEEEcC
Q 004410 581 VSPSEDSNIYIWNYS 595 (755)
Q Consensus 581 ~sgs~Dg~I~iWd~~ 595 (755)
++++.||.|++|+++
T Consensus 410 ~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 410 SVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEESSSCCEEEECC
T ss_pred EEEecCceEEEEeec
Confidence 999999999999986
No 24
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.4e-35 Score=368.57 Aligned_cols=341 Identities=21% Similarity=0.283 Sum_probs=282.3
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+.+|.+.+.+++|+|+|++||+|+.||+|+||+..+.. ....+.+|.+.|.+++|+|+|++||+++.||.|+
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-------KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-------EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEE
Confidence 355788889999999999999999999999999987643 3346789999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
|||+.+++.+..+..+...+.++.|.+.....+ ...++.++.+.+|+... ...+..+.+|..
T Consensus 683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------l~sg~~d~~v~vwd~~~----~~~~~~~~~h~~ 744 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL--------------LATGSNDFFLKLWDLNQ----KECRNTMFGHTN 744 (1249)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSCCE--------------EEEEETTSCEEEEETTS----SSEEEEECCCSS
T ss_pred EEECCCCceEEEEcCCCCcEEEEEEecCCCceE--------------EEEEeCCCeEEEEECCC----cchhheecCCCC
Confidence 999999999999888888788887776543322 33456677777777654 345678889999
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-------------------------------------------
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF------------------------------------------- 425 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~------------------------------------------- 425 (755)
.|.+++|+|++ .|++++.||+|++||+.+++....+
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 99999999999 9999999999999998876554332
Q ss_pred -------------ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCC
Q 004410 426 -------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMT 491 (755)
Q Consensus 426 -------------~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~d 491 (755)
.|...|.+++|+| +++++++++.||.|++||+.++..+ .+..|...|++++|+|+|+.|++++.|
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC
Confidence 3667899999999 9999999999999999999998877 577899999999999999999999999
Q ss_pred CcEEEEECCCCeEee------eee-----------------------EEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 492 GNCRFYDIKDNQLYQ------QNQ-----------------------ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 492 g~I~iwD~~~~~~~~------~~~-----------------------~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
|.|++||+.+..... ... .............+++++|+| ++.++++++.+
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~g~~~ 982 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP-HLEYVAFGDED 982 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT-TSSEEEEEETT
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC-CCCEEEEEcCC
Confidence 999999976421100 000 000000112356799999999 89999999999
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
|.|++|+..+....... ..|...|++++|+|+|++|++++.||.|++||+.+++.
T Consensus 983 g~i~i~d~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSG--VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp SCCEEEETTTTSCEEEC--CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred CCEEEEEcCCCceeeec--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence 99999999876554444 67899999999999999999999999999999998863
No 25
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.9e-35 Score=344.09 Aligned_cols=295 Identities=21% Similarity=0.340 Sum_probs=242.9
Q ss_pred cccccceeeeeccCcceeecCCC-CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 225 LKKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg-~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
++....+.+|.+.|.+++|+|++ ++|++|+.|++|+||++........ ...+.+.+|.+.|.+++|+|++++|++|+
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--~~~~~~~~h~~~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--VAQRRLTGHSHFVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--EEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--cccceecCCCCcEEEEEECCCCCEEEEEe
Confidence 44445688999999999999976 6899999999999999876443211 23356889999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.||+|+|||+.++.. +..
T Consensus 450 ~Dg~v~vwd~~~~~~--------------------------------------------------------------~~~ 467 (694)
T 3dm0_A 450 WDGELRLWDLAAGVS--------------------------------------------------------------TRR 467 (694)
T ss_dssp TTSEEEEEETTTTEE--------------------------------------------------------------EEE
T ss_pred CCCcEEEEECCCCcc--------------------------------------------------------------eeE
Confidence 999999999977653 334
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCC--CEEEEEeCCCcEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDD--NYFISGSIDGKVRIW 456 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~--~~l~sgs~Dg~V~iw 456 (755)
+.+|...|.+++|+|++ +|++++.|++|++||+......... .|...|.+++|+| ++ .+|++|+.|++|++|
T Consensus 468 ~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vw 546 (694)
T 3dm0_A 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVW 546 (694)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEE
T ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEE
Confidence 66899999999999999 9999999999999998766554443 3888999999999 54 689999999999999
Q ss_pred EcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 457 EVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 457 dl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
|++++++. .+..|...|++++|+|+|++|++|+.||.|++||+.+++.+... .+...|.+++|+| ++.+
T Consensus 547 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~---------~~~~~v~~~~~sp-~~~~ 616 (694)
T 3dm0_A 547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---------EANSVIHALCFSP-NRYW 616 (694)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC---------BCSSCEEEEEECS-SSSE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe---------cCCCcEEEEEEcC-CCcE
Confidence 99998877 57789999999999999999999999999999999999876432 1345799999999 7777
Q ss_pred EEEEECCCcEEEEECCcceeeEEEee-----------------eccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 536 VIVTSADSLVRVLCGENVVGKFKASA-----------------FRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~~~~~~~~~-----------------~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
+++++ ++.|+|||+.+......... ..+...+++++|+|+|++|++|+.||.|+||++.
T Consensus 617 l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 617 LCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 76665 56699999887544332210 0112247899999999999999999999999985
No 26
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-34 Score=321.08 Aligned_cols=248 Identities=23% Similarity=0.372 Sum_probs=223.2
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
..+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--------------------------------------- 142 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--------------------------------------- 142 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---------------------------------------
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------------------------------
Confidence 45789999999999999999999999999999999977642
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~ 435 (755)
...+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+ .|...|.+++
T Consensus 143 -----------------------~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~ 199 (410)
T 1vyh_C 143 -----------------------ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 199 (410)
T ss_dssp -----------------------CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred -----------------------EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEE
Confidence 34567899999999999999 9999999999999999999998888 4999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
|+| ++++|++|+.|++|++||++++.++ .+..|...|.+++++|+|.+|++|+.||.|++||+.++.....
T Consensus 200 ~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~------- 271 (410)
T 1vyh_C 200 IMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE------- 271 (410)
T ss_dssp ECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------
T ss_pred EeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE-------
Confidence 999 9999999999999999999998876 5778999999999999999999999999999999998876543
Q ss_pred cccCCCCCeEEEEEcCCC-------------------CCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 515 KKKLPGKRITGFQFSPSD-------------------PSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d-------------------~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
...|...|.+++|+|.. +.+|++++.|+.|++||..+....... .+|...|.+++|+|
T Consensus 272 -~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~~~ 348 (410)
T 1vyh_C 272 -LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL--VGHDNWVRGVLFHS 348 (410)
T ss_dssp -ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECS
T ss_pred -ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE--ECCCCcEEEEEEcC
Confidence 23467889999999942 568999999999999999887655554 67999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 576 DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 576 dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|++|++|+.|+.|+|||+.+++
T Consensus 349 ~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 349 GGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp SSSCEEEEETTTEEEEECCTTSC
T ss_pred CCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999999999999998765
No 27
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=308.42 Aligned_cols=249 Identities=23% Similarity=0.380 Sum_probs=218.0
Q ss_pred eeeecccccEEEEEEecC----CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 278 QEFLAHEGSILTMKFSLD----GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspd----g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
+.+++|.+.|++++|+|+ +.+||||+.|++|+||++.++...
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---------------------------------- 71 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---------------------------------- 71 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE----------------------------------
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee----------------------------------
Confidence 345789999999999985 679999999999999998655321
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcE
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYV 431 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V 431 (755)
....+.+|...|.+++|++++ .+++++.|++|++||+.+++++..+. +...+
T Consensus 72 --------------------------~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~ 125 (321)
T 3ow8_A 72 --------------------------LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDA 125 (321)
T ss_dssp --------------------------EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCC
T ss_pred --------------------------eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccE
Confidence 123567899999999999999 99999999999999999999998885 77889
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeE
Q 004410 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (755)
Q Consensus 432 ~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~ 510 (755)
.+++|+| ++++|++|+.||.|++||+++++.. .+..+...|.+++|+|+|++|++|+.||.|++||+.+++.+..
T Consensus 126 ~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~--- 201 (321)
T 3ow8_A 126 WTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT--- 201 (321)
T ss_dssp CCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---
T ss_pred EEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---
Confidence 9999999 9999999999999999999988766 5667788899999999999999999999999999999987653
Q ss_pred EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEE
Q 004410 511 CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590 (755)
Q Consensus 511 ~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~ 590 (755)
...|...|++++|+| ++.+|++++.|+.|+|||.......... .+|...|.+++|+|++++|++++.|+.|+
T Consensus 202 -----~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 202 -----LEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL--SGHASWVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp -----ECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -----EcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEE--cCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 234667899999999 8999999999999999999876554443 77999999999999999999999999999
Q ss_pred EEEcCCCC
Q 004410 591 IWNYSNQD 598 (755)
Q Consensus 591 iWd~~~~~ 598 (755)
|||+.+++
T Consensus 274 iwd~~~~~ 281 (321)
T 3ow8_A 274 VWDVGTRT 281 (321)
T ss_dssp EEETTTTE
T ss_pred EEeCCCCE
Confidence 99998776
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=326.78 Aligned_cols=335 Identities=12% Similarity=0.186 Sum_probs=265.6
Q ss_pred eccCcceeecCCCC-eeEEe----------eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 235 IDRHGSATLKPGDH-ELTLG----------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 235 ~~~~~~~~~spdg~-~lasg----------s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
...+.+++|+|+++ +|++| +.|+.|+||++...... .... ...|...|.+++|+|++++|++++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----~~~~-~~~~~~~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----KPIA-SLQVDSKFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----SCSC-CCCCSSCEEEEEECSSSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC----cEEE-EEecCCceEEEEECCCCCeEEEEc
Confidence 35678899999997 99999 88999999998765421 0111 235889999999999999999999
Q ss_pred CCCcEEEEEccC----CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec---
Q 004410 304 EDGTVRVWKVIE----HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL--- 376 (755)
Q Consensus 304 ~Dg~I~vWdv~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 376 (755)
.||.|+||++.+ .+.+..+..+...+.++.|.++.... .+.++.++.+.+|+......
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---------------l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNV---------------LASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTB---------------EEEECSSSCEEBCBTTTTSSCTT
T ss_pred cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCE---------------EEEEcCCCeEEEEECCCCccccc
Confidence 999999999987 34666777777777888877653332 23445566777776654331
Q ss_pred --cCccceEecCCCCCEEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCeEEEEEe-c------CCcEEEEEEeeCCCCEEE
Q 004410 377 --LEKPLHEFQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS-H------NNYVTSVAFNPVDDNYFI 445 (755)
Q Consensus 377 --~~~~~~~~~gh~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h------~~~V~~i~fsp~d~~~l~ 445 (755)
....+..+.+|...|.+++|+|+ + .|++++.|+.|++||+.+++++..+. + ...|++++|+|.+..+|+
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 01112334689999999999998 4 89999999999999999999998886 3 788999999993347999
Q ss_pred EEeCCC---cEEEEEcCCC-eEE-Eec-cCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 446 SGSIDG---KVRIWEVRRC-QVV-DYT-DIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 446 sgs~Dg---~V~iwdl~~~-~~~-~~~-~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
+++.|+ .|++||++++ ..+ .+. .|...|++++|+| ++++|++++.||.|++||+.+++.+..+ ..
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~--------~~ 303 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF--------PA 303 (416)
T ss_dssp EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE--------EC
T ss_pred EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee--------cC
Confidence 999999 9999999986 344 444 6889999999999 9999999999999999999998776532 24
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEE---------------------------------eeeccC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKA---------------------------------SAFRVA 565 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~---------------------------------~~~~~~ 565 (755)
|...|++++|+|+++.+|++++.|+.|+||++......... ....+.
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG 383 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence 66789999999944489999999999999998764321110 001156
Q ss_pred CceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 566 GSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 566 ~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
..+.+++|+|+|++|++++.|+.|+||++.+.
T Consensus 384 ~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 384 EPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 67789999999999999999999999999865
No 29
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.2e-33 Score=325.29 Aligned_cols=251 Identities=18% Similarity=0.243 Sum_probs=204.7
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccccc-EEEEEEec--CCCEEEEEcCCCcEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSL--DGQYLASGGEDGTVR 309 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~-V~~l~fsp--dg~~LaSgs~Dg~I~ 309 (755)
.|...+.+++|+|++++||+++ ++.|+||++...... ....+.+.+|.+. |.+++|+| ++++||+++.||.|+
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~---~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK---VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCS---SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCc---cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 3457788899999999999998 789999998754111 1234568899999 99999999 999999999999999
Q ss_pred EEEccCC--------eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccc
Q 004410 310 VWKVIEH--------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (755)
Q Consensus 310 vWdv~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (755)
|||+.++ .....+..+...+.++.|.++... ++...... ...+.+.+|+. .+.+
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~-----------~~~~~v~~~d~------~~~~ 153 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR-LCVVGEGR-----------DNFGVFISWDS------GNSL 153 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE-EEEEECCS-----------SCSEEEEETTT------CCEE
T ss_pred EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCE-EEEeccCC-----------CCccEEEEEEC------CCcc
Confidence 9999754 556666666666677777655432 11111110 01245666652 3467
Q ss_pred eEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCC---cEEEEEEeeCC-CCEEEEEeCCCcEE
Q 004410 382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNN---YVTSVAFNPVD-DNYFISGSIDGKVR 454 (755)
Q Consensus 382 ~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~---~V~~i~fsp~d-~~~l~sgs~Dg~V~ 454 (755)
..+.+|...|.+++|+|++ .|++++.|+.|++||+.+++++..+. |.. .|++++|+| + +++|++++.||.|+
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKIS 232 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEE
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEE
Confidence 7888999999999999998 79999999999999999999998886 888 899999999 7 99999999999999
Q ss_pred EEEcCCCeEEEec-----cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 455 IWEVRRCQVVDYT-----DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 455 iwdl~~~~~~~~~-----~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
+||+.+++.+... .|...|.+++|+ ++++|++++.||.|++||+.+++....
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~ 289 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQK 289 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 9999999888654 889999999999 999999999999999999998776543
No 30
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-34 Score=307.47 Aligned_cols=290 Identities=14% Similarity=0.197 Sum_probs=248.1
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
.....+.+|...+.+++|+|++++|++|+.||.|+||++.... ..+.+.+|.+.|.+++|+|++++|++++.|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 95 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-------RLGTLDGHTGTIWSIDVDCFTKYCVTGSAD 95 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence 3334578889999999999999999999999999999976543 335678899999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|++||+.+++.+. .+.
T Consensus 96 g~i~iwd~~~~~~~~--------------------------------------------------------------~~~ 113 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVA--------------------------------------------------------------TWK 113 (369)
T ss_dssp TEEEEEETTTCCEEE--------------------------------------------------------------EEE
T ss_pred CeEEEEECCCCcEEE--------------------------------------------------------------Eee
Confidence 999999998775432 222
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCeE-----------EEEE-ecCC--cEEEEEEeeCCCCEEE
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRC-----------LRVF-SHNN--YVTSVAFNPVDDNYFI 445 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~D-----g~V~iWdl~s~~~-----------~~~~-~h~~--~V~~i~fsp~d~~~l~ 445 (755)
|...|.+++|+|++ +|++++.+ +.|++||+..... +..+ .|.. .+.+++|+| ++++|+
T Consensus 114 -~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 191 (369)
T 3zwl_B 114 -SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYII 191 (369)
T ss_dssp -CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEE
T ss_pred -cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEE
Confidence 67789999999999 89999988 9999999875532 1222 3444 899999999 999999
Q ss_pred EEeCCCcEEEEEcCC-CeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCe
Q 004410 446 SGSIDGKVRIWEVRR-CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523 (755)
Q Consensus 446 sgs~Dg~V~iwdl~~-~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I 523 (755)
+++.||.|++||+++ .+.+ .+..|...|.+++|+|++++|++++.||.|++||+.+++...... +...+
T Consensus 192 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------~~~~~ 262 (369)
T 3zwl_B 192 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---------TDCPL 262 (369)
T ss_dssp EEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------CSSCE
T ss_pred EEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---------CCCCc
Confidence 999999999999998 5555 566788999999999999999999999999999999988765432 45789
Q ss_pred EEEEEcCCCCCEEEEEECCC--------------cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcE
Q 004410 524 TGFQFSPSDPSKVIVTSADS--------------LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNI 589 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~Dg--------------~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I 589 (755)
..++|+| ++.++++++.++ .+++||..+....... ..|...|++++|+|++++|++++.||.|
T Consensus 263 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~v 339 (369)
T 3zwl_B 263 NTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV--QGHFGPLNTVAISPQGTSYASGGEDGFI 339 (369)
T ss_dssp EEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe--ecccCcEEEEEECCCCCEEEEEcCCCeE
Confidence 9999999 899999999988 8999998876655554 6789999999999999999999999999
Q ss_pred EEEEcCCCC
Q 004410 590 YIWNYSNQD 598 (755)
Q Consensus 590 ~iWd~~~~~ 598 (755)
+||++.++.
T Consensus 340 ~iw~~~~~~ 348 (369)
T 3zwl_B 340 RLHHFEKSY 348 (369)
T ss_dssp EEEEECHHH
T ss_pred EEEECcccc
Confidence 999998764
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.1e-34 Score=303.12 Aligned_cols=251 Identities=21% Similarity=0.323 Sum_probs=217.1
Q ss_pred cceeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 276 TGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
...++.+|.+.|++++|+|++ ++|+||+.|++|++|++......
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------------------- 53 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------------------------- 53 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-----------------------------------
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-----------------------------------
Confidence 345789999999999999965 89999999999999998532110
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEE
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT 432 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~ 432 (755)
...++..+.+|...|.+++|++++ +|++++.|++|++||+.+++++..+. |...|.
T Consensus 54 ----------------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~ 111 (319)
T 3frx_A 54 ----------------------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVM 111 (319)
T ss_dssp ----------------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred ----------------------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEE
Confidence 012356788999999999999999 99999999999999999999988884 999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccC------CCeEEEEeCCCcEEEEECCCCeEee
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD------GKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spd------g~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
+++|+| ++.+|++|+.|++|++||++...+..+..|...|.+++|.|. +..|++++.|+.|++||+++.+...
T Consensus 112 ~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 190 (319)
T 3frx_A 112 SVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190 (319)
T ss_dssp EEEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe
Confidence 999999 999999999999999999998777788899999999999995 4589999999999999999887654
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
. ...|...|++++|+| ++.+|++++.|+.|+|||.......... .+...|.+++|+|++.+|++++.+
T Consensus 191 ~--------~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~la~~~~~ 258 (319)
T 3frx_A 191 D--------FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPNRYWLAAATAT 258 (319)
T ss_dssp E--------ECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEE---ECCSCEEEEEECSSSSEEEEEETT
T ss_pred e--------ecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCcEEEEEEcCCCCEEEEEcCC
Confidence 3 234678999999999 9999999999999999999886655543 345689999999999999988865
Q ss_pred CcEEEEEcCCC
Q 004410 587 SNIYIWNYSNQ 597 (755)
Q Consensus 587 g~I~iWd~~~~ 597 (755)
.|++|++..+
T Consensus 259 -~i~v~~~~~~ 268 (319)
T 3frx_A 259 -GIKVFSLDPQ 268 (319)
T ss_dssp -EEEEEEETTE
T ss_pred -CcEEEEeCcC
Confidence 5999998754
No 32
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=305.44 Aligned_cols=256 Identities=20% Similarity=0.272 Sum_probs=211.2
Q ss_pred cceeeecccc-cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 276 TGQEFLAHEG-SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 276 ~~~~l~~H~~-~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
..+++.+|.+ .|++++|+|+|++||+|+.|++|+||++.++.....
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~--------------------------------- 53 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK--------------------------------- 53 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE---------------------------------
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee---------------------------------
Confidence 4467889988 999999999999999999999999999876542110
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCc
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNY 430 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~ 430 (755)
.....+|...|.+++|+|++ +|++++.|++|+|||+..+. ++..+ .|...
T Consensus 54 --------------------------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~ 107 (345)
T 3fm0_A 54 --------------------------SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE 107 (345)
T ss_dssp --------------------------EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC
T ss_pred --------------------------eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC
Confidence 11135799999999999999 99999999999999998764 45555 49999
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe---EE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ---VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~---~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
|++++|+| ++++|++|+.|++|++||+.+.. ++ .+..|...|.+++|+|++++|++|+.|+.|++||+.++....
T Consensus 108 v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~ 186 (345)
T 3fm0_A 108 VKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186 (345)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE
T ss_pred ceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE
Confidence 99999999 99999999999999999998753 22 467788999999999999999999999999999998876432
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce-------------eeEEEeee-ccCCceEEEE
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV-------------GKFKASAF-RVAGSQMFAT 572 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~-------------~~~~~~~~-~~~~~v~~l~ 572 (755)
.. ....|...|++++|+| ++.+|++++.|++|+||+..... ........ .|...|.+++
T Consensus 187 ~~------~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 259 (345)
T 3fm0_A 187 CA------TLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259 (345)
T ss_dssp EE------EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEE
T ss_pred EE------EecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEE
Confidence 11 1334678999999999 89999999999999999953210 01111112 3788999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 573 FTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 573 fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|+|++.+|++++.|+.|++|++..+.
T Consensus 260 ~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 260 WCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp ECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred EecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 99999999999999999999987653
No 33
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.1e-34 Score=317.53 Aligned_cols=311 Identities=11% Similarity=0.120 Sum_probs=248.2
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC----C---C
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----G---Q 297 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd----g---~ 297 (755)
.+....+.+|.+.+.+++|+| ++|++|+.||.|+||++..... .........+.+|...|.+++|+|+ + +
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDN-ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTT-CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccc-ccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 344556778889999999999 8999999999999999876542 1223345678899999999999999 9 9
Q ss_pred EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceecc
Q 004410 298 YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (755)
Q Consensus 298 ~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (755)
+|++++.||.|++|++.+++...
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~--------------------------------------------------------- 105 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETK--------------------------------------------------------- 105 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTC---------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEccCCcccc---------------------------------------------------------
Confidence 99999999999999987654200
Q ss_pred CccceEecCC-----CCCEEEEEEc----CCC-e-EEEEeCCCcEEEEeCCC------CeEEE-----EE--------ec
Q 004410 378 EKPLHEFQGH-----SSEVLDLSWS----KNG-F-LLSSSADKTVRLWQVGI------DRCLR-----VF--------SH 427 (755)
Q Consensus 378 ~~~~~~~~gh-----~~~V~~l~~s----~~~-~-L~s~s~Dg~V~iWdl~s------~~~~~-----~~--------~h 427 (755)
...+..+.+| ...|.+++|+ |++ . |++++.|+.|++||+.+ ++.+. .+ .|
T Consensus 106 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (397)
T 1sq9_A 106 KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 185 (397)
T ss_dssp CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSS
T ss_pred cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCC
Confidence 0013345566 5899999999 888 7 99999999999999988 55544 44 27
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-ecc---C---CcceEEEEEccCCCeEEEEeCC---CcEEEE
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTD---I---REIVSAVCYCPDGKGGIVGTMT---GNCRFY 497 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~---~---~~~V~~v~~spdg~~la~gs~d---g~I~iw 497 (755)
...|++++|+| ++ +|++++.||.|++||+++++.+. +.. | ...|.+++|+|++++|++++.| |.|++|
T Consensus 186 ~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 186 SQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp CCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence 89999999999 88 99999999999999999988774 555 6 8899999999999999999999 999999
Q ss_pred ECCCCeEeeeeeEEecc-----cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeee----cc----
Q 004410 498 DIKDNQLYQQNQICLQG-----KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF----RV---- 564 (755)
Q Consensus 498 D~~~~~~~~~~~~~~~~-----~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~----~~---- 564 (755)
|+++++.+..+...... ....|...|++++|+| ++.+|++++.|+.|+|||..+.......... .|
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 342 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhh
Confidence 99988766543210000 0001668899999999 8899999999999999999887655554200 45
Q ss_pred -----------CCceEEEEEecCC----------CEEEEEeCCCcEEEEEcCCCC
Q 004410 565 -----------AGSQMFATFTSDG----------KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 565 -----------~~~v~~l~fspdg----------~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...|++++|+|+| ++|++++.||.|+||++.+++
T Consensus 343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 343 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred hccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8899999999999 799999999999999998763
No 34
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.6e-34 Score=315.45 Aligned_cols=299 Identities=16% Similarity=0.153 Sum_probs=236.2
Q ss_pred ccccceeeeeccCcceeecCCC-CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEc
Q 004410 226 KKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG 303 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg-~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs 303 (755)
+....+.+|...+.+++|+|++ ++|++|+.||.|+||++....... ...+.+|.+.|.+++|+| ++++|++++
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-----FIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-----EECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-----eeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 3445667788889999999999 899999999999999987544221 112347999999999999 789999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|+.|++||+.+.. +..+ ..
T Consensus 139 ~d~~i~iwd~~~~~-~~~~-----------------------------------------------------------~~ 158 (383)
T 3ei3_B 139 IRGATTLRDFSGSV-IQVF-----------------------------------------------------------AK 158 (383)
T ss_dssp TTTEEEEEETTSCE-EEEE-----------------------------------------------------------EC
T ss_pred CCCEEEEEECCCCc-eEEE-----------------------------------------------------------ec
Confidence 99999999987432 1111 11
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCC-EEEEEeCCCcEEEEEcCC
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~-~l~sgs~Dg~V~iwdl~~ 460 (755)
..+|...|.+++|+|++ +|++++.|+.|++||+. ++++..+ .|...|.+++|+| ++. +|++++.|+.|++||+++
T Consensus 159 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 159 TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGG
T ss_pred cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCC
Confidence 23466889999999999 99999999999999995 5566665 5999999999999 777 999999999999999998
Q ss_pred ----CeEEEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC----------CCCeEE
Q 004410 461 ----CQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP----------GKRITG 525 (755)
Q Consensus 461 ----~~~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~----------~~~I~~ 525 (755)
+.++....|...|++++|+| ++++|++++.||.|++||++++............ ...+ ...+..
T Consensus 237 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~ 315 (383)
T 3ei3_B 237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR-QFQHLTPIKATWHPMYDLIV 315 (383)
T ss_dssp CCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC-CCTTSCCCCCEECSSSSEEE
T ss_pred CCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc-ccccccceEEeccCCCCceE
Confidence 66776668999999999999 9999999999999999999987765443321110 0111 234445
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
++|+| ++.+ +++.|+.|+|||..+...........+...+..++|+|+|++|++|+ |+.|+|||+++
T Consensus 316 ~~~s~-dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 316 AGRYP-DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECBC-CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecC-Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 66666 4444 67789999999998766655543233567788889999999999997 99999999975
No 35
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=310.30 Aligned_cols=244 Identities=16% Similarity=0.205 Sum_probs=207.8
Q ss_pred eeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 234 ~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
+...+.+++|+|++ .|++|+.||+|+|||+.++..... ....+.+|.+.|++|+|+|+|++||+|+.|++|+|||+
T Consensus 81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~---~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIV---SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEE---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeE---eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34567889999985 678999999999999876543211 12345689999999999999999999999999999999
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.+++. +..+.+|...|.+
T Consensus 157 ~~~~~--------------------------------------------------------------~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 157 AQQVV--------------------------------------------------------------LSSYRAHAAQVTC 174 (344)
T ss_dssp TTTEE--------------------------------------------------------------EEEECCCSSCEEE
T ss_pred CCCcE--------------------------------------------------------------EEEEcCcCCceEE
Confidence 87753 3456789999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Eec
Q 004410 394 LSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYT 467 (755)
Q Consensus 394 l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~ 467 (755)
++|++++ .|++++.|++|++||+++++++..+. +...+++++|+|.++++|++|+.||+|+|||+++++++ .+.
T Consensus 175 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~ 254 (344)
T 4gqb_B 175 VAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA 254 (344)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE
T ss_pred EEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc
Confidence 9999987 78999999999999999999888774 66789999999977789999999999999999988766 677
Q ss_pred cCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 468 DIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 468 ~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
.|...|++++|+|++ ++|++|+.||+|+|||+.++++.. ...|...|++++|+|++..+|++++.|++|+
T Consensus 255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~---------~~~H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR---------SQAHRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE---------ECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE---------EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 899999999999998 578999999999999999987643 2347789999999996667888999999999
Q ss_pred EEECCc
Q 004410 547 VLCGEN 552 (755)
Q Consensus 547 iwd~~~ 552 (755)
+|++.+
T Consensus 326 ~w~v~~ 331 (344)
T 4gqb_B 326 HHVVPT 331 (344)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999875
No 36
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-34 Score=345.71 Aligned_cols=210 Identities=14% Similarity=0.109 Sum_probs=163.6
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
.....+|.+.+.+++|+|++++||+|+.||+|+||+....... ....|...|.+|+|+| |++|++++.|++
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--------~~~~~~~~V~~l~fsp-g~~L~S~s~D~~ 80 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--------IKLEDRSAIKEMRFVK-GIYLVVINAKDT 80 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--------EECSSCCCEEEEEEET-TTEEEEEETTCE
T ss_pred cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--------EEcCCCCCEEEEEEcC-CCEEEEEECcCe
Confidence 3344577888999999999999999999999999997543211 1234788999999999 889999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccc------
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL------ 381 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 381 (755)
|+|||+.+++.+..+. +...+.++.|.++. ...+.++.++.+.+|+.....+....+
T Consensus 81 v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g----------------~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVF-VPGKITSIDTDASL----------------DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp EEEEETTTCSEEEEEE-CSSCEEEEECCTTC----------------SEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred EEEEECCCCcEEEEEc-CCCCEEEEEECCCC----------------CEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 9999999998877765 22334444444332 123455667777777765433211000
Q ss_pred -eEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-c------------------CCcEEEEEEeeC
Q 004410 382 -HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-H------------------NNYVTSVAFNPV 439 (755)
Q Consensus 382 -~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h------------------~~~V~~i~fsp~ 439 (755)
..+.+|.+.|.+++|+|++ .|++++.|++| +||+++++++..+. | ...|++++|+|
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp- 221 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP- 221 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-
Confidence 3357899999999999974 89999999999 99999999988885 3 37799999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
++++|++|+.||+|++||+++++++.
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEE
Confidence 89999999999999999998877654
No 37
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-33 Score=303.04 Aligned_cols=250 Identities=18% Similarity=0.331 Sum_probs=215.4
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+++.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~------------------------------------- 89 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK------------------------------------- 89 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-------------------------------------
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-------------------------------------
Confidence 3456889999999999999999999999999999999877653
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe----EEEEE-ecCC
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR----CLRVF-SHNN 429 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~----~~~~~-~h~~ 429 (755)
+..+..|...|.+++|+|++ +|++++.|+.|++||+.+.. ....+ .|..
T Consensus 90 -------------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~ 144 (340)
T 1got_B 90 -------------------------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144 (340)
T ss_dssp -------------------------EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS
T ss_pred -------------------------ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc
Confidence 23455688899999999999 99999999999999998753 34444 5999
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeee
Q 004410 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~ 508 (755)
.|.++.|++ ++ .+++++.|++|++||+.+++.+ .+..|...|.+++|+|++++|++|+.||.|++||++++.....
T Consensus 145 ~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~- 221 (340)
T 1got_B 145 YLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT- 221 (340)
T ss_dssp CEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE-
T ss_pred cEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE-
Confidence 999999998 54 5899999999999999998877 5677999999999999999999999999999999998876543
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
...|...|++++|+| ++.+|++++.|+.|++||..............+...|++++|+|+|++|++|+.||.
T Consensus 222 -------~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 222 -------FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp -------ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred -------EcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe
Confidence 234678899999999 899999999999999999987655444322234457999999999999999999999
Q ss_pred EEEEEcCCCC
Q 004410 589 IYIWNYSNQD 598 (755)
Q Consensus 589 I~iWd~~~~~ 598 (755)
|++||+.+++
T Consensus 294 i~vwd~~~~~ 303 (340)
T 1got_B 294 CNVWDALKAD 303 (340)
T ss_dssp EEEEETTTCC
T ss_pred EEEEEcccCc
Confidence 9999998765
No 38
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=310.78 Aligned_cols=296 Identities=13% Similarity=0.203 Sum_probs=240.3
Q ss_pred eeeeeccCcceeecCCCCe-eEEeeC---CCeEEEEECCCCcccccccccceeeecccccEEEEEEecC---CCEEEEEc
Q 004410 231 MARIIDRHGSATLKPGDHE-LTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGG 303 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~-lasgs~---dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd---g~~LaSgs 303 (755)
..+|.+.+.+++|+|++.. +++|+. |+.|+||++....... ....+|...|.+++|+|+ +++|++|+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------LREIEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------EEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------eeeecccCcEEEEEEcCCCCCCceEEEec
Confidence 4567888999999999964 556665 9999999987544211 123479999999999998 79999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.||.|++||+.+++ .++..
T Consensus 88 ~dg~i~iwd~~~~~-------------------------------------------------------------~~~~~ 106 (357)
T 3i2n_A 88 FGGNLHIWNLEAPE-------------------------------------------------------------MPVYS 106 (357)
T ss_dssp TTSCEEEECTTSCS-------------------------------------------------------------SCSEE
T ss_pred CCCeEEEEeCCCCC-------------------------------------------------------------ccEEE
Confidence 99999999987653 12455
Q ss_pred ecCCCCCEEEEEE------cCCC-eEEEEeCCCcEEEEeCCCCe-EEEEEe-c----CCcEEEEE----EeeCCCCEEEE
Q 004410 384 FQGHSSEVLDLSW------SKNG-FLLSSSADKTVRLWQVGIDR-CLRVFS-H----NNYVTSVA----FNPVDDNYFIS 446 (755)
Q Consensus 384 ~~gh~~~V~~l~~------s~~~-~L~s~s~Dg~V~iWdl~s~~-~~~~~~-h----~~~V~~i~----fsp~d~~~l~s 446 (755)
+.+|...|.++.| ++++ +|++++.|+.|++||+.+++ .+..+. | ...|.+++ |+| ++++|++
T Consensus 107 ~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~ 185 (357)
T 3i2n_A 107 VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCA 185 (357)
T ss_dssp ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEE
T ss_pred EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEE
Confidence 6789999999965 6777 99999999999999999887 666663 3 34899998 677 9999999
Q ss_pred EeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc---CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCe
Q 004410 447 GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP---DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523 (755)
Q Consensus 447 gs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp---dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I 523 (755)
++.||.|++||+++++......+...|.+++|+| ++.+|++++.||.|++||+++++........ ....|...|
T Consensus 186 ~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~v 262 (357)
T 3i2n_A 186 GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV---SEKAHKSTV 262 (357)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE---EEECCSSCE
T ss_pred EccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee---ccCCCcCCE
Confidence 9999999999999999988888999999999999 9999999999999999999877654433211 123577899
Q ss_pred EEEEEcCCCCC-EEEEEECCCcEEEEECCccee-----------------eEEEeeeccCCceEEEEEecCCCEEE-EEe
Q 004410 524 TGFQFSPSDPS-KVIVTSADSLVRVLCGENVVG-----------------KFKASAFRVAGSQMFATFTSDGKHVV-SPS 584 (755)
Q Consensus 524 ~~v~fsp~d~~-~l~s~s~Dg~I~iwd~~~~~~-----------------~~~~~~~~~~~~v~~l~fspdg~~L~-sgs 584 (755)
++++|+| ++. ++++++.|+.|++||...... ........|...|++++|+|+|++|+ +++
T Consensus 263 ~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~ 341 (357)
T 3i2n_A 263 WQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS 341 (357)
T ss_dssp EEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE
T ss_pred EEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec
Confidence 9999999 666 899999999999999874321 22333467899999999999999998 899
Q ss_pred CCCcEEEEEcCCCC
Q 004410 585 EDSNIYIWNYSNQD 598 (755)
Q Consensus 585 ~Dg~I~iWd~~~~~ 598 (755)
.||.|+|||+.+.+
T Consensus 342 ~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 342 FDQTVRVLIVTKLN 355 (357)
T ss_dssp TTSEEEEEEECC--
T ss_pred CCCcEEEEECCCcc
Confidence 99999999998764
No 39
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.5e-34 Score=309.32 Aligned_cols=291 Identities=12% Similarity=0.172 Sum_probs=240.8
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
.|.+.+.+++|+|++++|++|+.++.|+||+..... +...+.+.+|.+.|.+++|+|++++|++++.||.|++||
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-----EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 366789999999999999999999999999976542 113456789999999999999999999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+.+++... ...+..|...|.
T Consensus 81 ~~~~~~~~------------------------------------------------------------~~~~~~~~~~v~ 100 (372)
T 1k8k_C 81 LKGRTWKP------------------------------------------------------------TLVILRINRAAR 100 (372)
T ss_dssp EETTEEEE------------------------------------------------------------EEECCCCSSCEE
T ss_pred CCCCeeee------------------------------------------------------------eEEeecCCCcee
Confidence 97765321 122356888999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeE---EEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC-------
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRC---LRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR------- 459 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~---~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~------- 459 (755)
+++|+|++ +|++++.|+.|++||+..+.. ...+ .|...|++++|+| ++++|++++.||.|++||++
T Consensus 101 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~ 179 (372)
T 1k8k_C 101 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEER 179 (372)
T ss_dssp EEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEccccccccc
Confidence 99999999 999999999999999988762 3333 3789999999999 99999999999999999954
Q ss_pred -----------CCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 460 -----------RCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 460 -----------~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
.++.+ .+..|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..+...|++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~v~~~~ 251 (372)
T 1k8k_C 180 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--------ASETLPLLAVT 251 (372)
T ss_dssp CCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--------ECSSCCEEEEE
T ss_pred ccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE--------ccCCCCeEEEE
Confidence 45555 56678899999999999999999999999999999988766542 23567899999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCc--ceeeE------------------------------E------Eee-eccCCce
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGEN--VVGKF------------------------------K------ASA-FRVAGSQ 568 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~--~~~~~------------------------------~------~~~-~~~~~~v 568 (755)
|+| ++.+++++ .|+.|++|+... ..... . ... .+|...|
T Consensus 252 ~~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 329 (372)
T 1k8k_C 252 FIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV 329 (372)
T ss_dssp EEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred Eec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence 999 77777776 999999999876 21000 0 111 3789999
Q ss_pred EEEEEe-cCC---CEEEEEeCCCcEEEEEcCCCCc
Q 004410 569 MFATFT-SDG---KHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 569 ~~l~fs-pdg---~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
++++|. ++| .+|++|+.||.|++|++.+++.
T Consensus 330 ~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 330 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp EEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 999966 677 9999999999999999987663
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.2e-33 Score=301.04 Aligned_cols=254 Identities=23% Similarity=0.316 Sum_probs=209.5
Q ss_pred cceeeecccccEEEEEE-----ec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecC
Q 004410 276 TGQEFLAHEGSILTMKF-----SL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~f-----sp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (755)
..+.+.+|.+.|++++| ++ |+++||||+.|++|+|||+.+.+....
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~---------------------------- 64 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY---------------------------- 64 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB----------------------------
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc----------------------------
Confidence 34578999999999999 77 999999999999999999865431100
Q ss_pred cceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-c
Q 004410 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-H 427 (755)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h 427 (755)
...+...+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |
T Consensus 65 ---------------------------~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 65 ---------------------------FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp ---------------------------SEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred ---------------------------cccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 012345678999999999999999 99999999999999999999988884 9
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec---cCCcceEEEEEccCC----------CeEEEEeCCCcE
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---DIREIVSAVCYCPDG----------KGGIVGTMTGNC 494 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~---~~~~~V~~v~~spdg----------~~la~gs~dg~I 494 (755)
...|.+++|+| ++++|++++.|++|++||+......... .|...|.+++|+|++ .+|++++.||.|
T Consensus 118 ~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 196 (343)
T 2xzm_R 118 QSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196 (343)
T ss_dssp CSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence 99999999999 9999999999999999999865554433 678889999999987 789999999999
Q ss_pred EEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe
Q 004410 495 RFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT 574 (755)
Q Consensus 495 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs 574 (755)
++||.. ...... ...|...|++++|+| ++.+|++++.|+.|++||.......... ..+...|.+++|+
T Consensus 197 ~iwd~~-~~~~~~--------~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~~v~~v~~s 264 (343)
T 2xzm_R 197 KVWNTN-FQIRYT--------FKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQRE--FDAGSTINQIAFN 264 (343)
T ss_dssp EEEETT-TEEEEE--------EECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSCSEE--EECSSCEEEEEEC
T ss_pred EEEcCC-CceeEE--------EcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCccccee--ecCCCcEEEEEEC
Confidence 999954 333221 234678999999999 8999999999999999998543322222 3355679999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 575 SDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 575 pdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|++++|+++ .|+.|++|++.+++
T Consensus 265 p~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 265 PKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp SSSCEEEEE-ESSCEEEEESSSCC
T ss_pred CCCCEEEEE-CCCCEEEEEeCCCC
Confidence 999887655 57889999998765
No 41
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-33 Score=295.48 Aligned_cols=289 Identities=19% Similarity=0.250 Sum_probs=241.9
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
+....+.+|.+.+.+++| |++.+|++|+.||.|+||+..... ....+..|.+.|.+++|+|++++|++++.|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 80 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-------LGTVVYTGQGFLNSVCYDSEKELLLFGGKD 80 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-------EEEEEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-------EEEEeecCCccEEEEEECCCCCEEEEecCC
Confidence 345567888899999999 999999999999999999975432 334577899999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|++|++..... .+++..+.
T Consensus 81 g~i~~~~~~~~~~-----------------------------------------------------------~~~~~~~~ 101 (313)
T 3odt_A 81 TMINGVPLFATSG-----------------------------------------------------------EDPLYTLI 101 (313)
T ss_dssp SCEEEEETTCCTT-----------------------------------------------------------SCC-CEEC
T ss_pred CeEEEEEeeecCC-----------------------------------------------------------CCcccchh
Confidence 9999999865421 12345667
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
+|...|.+++|. .+.|++++.|+.|++|| .++.+..+ .|...|.+++|.|.++++|++++.||.|++||.......
T Consensus 102 ~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 178 (313)
T 3odt_A 102 GHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKT 178 (313)
T ss_dssp CCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEE
T ss_pred hcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEE
Confidence 899999999993 33999999999999999 66666666 499999999999878999999999999999994433332
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
....+...+.+++|+|++. +++++.+|.|++||+++++.+..+ ..|...|++++|+| ++ .+++++.|+.
T Consensus 179 ~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~i~~~~~~~-~~-~l~~~~~dg~ 247 (313)
T 3odt_A 179 FSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY--------EGHESFVYCIKLLP-NG-DIVSCGEDRT 247 (313)
T ss_dssp ECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECT-TS-CEEEEETTSE
T ss_pred EeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh--------hcCCceEEEEEEec-CC-CEEEEecCCE
Confidence 3333889999999999998 999999999999999998776542 24678899999999 55 5999999999
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|++||..+....... ..|...|.+++|+|+++ +++++.||.|++||+.+++
T Consensus 248 v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 248 VRIWSKENGSLKQVI--TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEEECTTTCCEEEEE--ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred EEEEECCCCceeEEE--eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 999999887655554 56788999999999998 6679999999999998876
No 42
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.9e-33 Score=305.62 Aligned_cols=270 Identities=21% Similarity=0.356 Sum_probs=215.1
Q ss_pred ecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.+|.+.|.+++|+|||++||+|+ ++.++||++.+++.+..+..+.....
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~------------------------------ 109 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK------------------------------ 109 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------------------------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccc------------------------------
Confidence 36999999999999999999987 78999999998877655432211000
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEee
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP 438 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp 438 (755)
.+. .........+...|.+++|+|++ +|++++.|++|+|||+.+++++..+. |...|++++|+|
T Consensus 110 ---------~~~-----~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p 175 (393)
T 1erj_A 110 ---------DPE-----NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 175 (393)
T ss_dssp -------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred ---------ccc-----cccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC
Confidence 000 00001112345569999999999 99999999999999999999988885 999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
++++|++++.|++|++||+++++......+...+.+++|+| ++++|++|+.||.|++||++++..+....... ....
T Consensus 176 -~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-~~~~ 253 (393)
T 1erj_A 176 -SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-ESGT 253 (393)
T ss_dssp -TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------C
T ss_pred -CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccc-cCCC
Confidence 99999999999999999999999887667788899999999 89999999999999999999987765432111 1123
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee----------eEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG----------KFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~----------~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
.|...|++++|+| ++.+|++++.|+.|++||+..... .......+|...|.+++|+|++++|++|+.|+
T Consensus 254 ~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 254 GHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred CCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence 5778999999999 899999999999999999875321 12223367889999999999999999999999
Q ss_pred cEEEEEcCCCC
Q 004410 588 NIYIWNYSNQD 598 (755)
Q Consensus 588 ~I~iWd~~~~~ 598 (755)
.|++||+.+++
T Consensus 333 ~v~iwd~~~~~ 343 (393)
T 1erj_A 333 GVLFWDKKSGN 343 (393)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCe
Confidence 99999998765
No 43
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4e-35 Score=326.74 Aligned_cols=300 Identities=17% Similarity=0.189 Sum_probs=224.4
Q ss_pred cceeeeeccCcceeecCC-CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCC
Q 004410 229 GAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDG 306 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg 306 (755)
.....|..+|.+++|+|. +++||+|+.||.|+||++...... ....+.+|.+.|++|+|+| ++++|+||+.||
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----TFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----EEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 345566778999999995 569999999999999998754321 1234678999999999998 789999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+|+|||+.++... .+ .....
T Consensus 188 ~v~iwd~~~~~~~-~~-----------------------------------------------------------~~~~~ 207 (435)
T 4e54_B 188 TTRLQDFKGNILR-VF-----------------------------------------------------------ASSDT 207 (435)
T ss_dssp CEEEEETTSCEEE-EE-----------------------------------------------------------ECCSS
T ss_pred EEEEeeccCCcee-EE-----------------------------------------------------------eccCC
Confidence 9999998654321 00 01123
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV- 464 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~- 464 (755)
+...+.+++|++++ +|++|+.||.|++||++.........|...|++++|+|....+|++|+.|+.|+|||+++.+..
T Consensus 208 ~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence 44567889999999 9999999999999999765443333599999999999954568999999999999999876432
Q ss_pred ---EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-
Q 004410 465 ---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS- 540 (755)
Q Consensus 465 ---~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s- 540 (755)
....|...|++++|+|+|++|++++.||.|+|||+.++........... .......+....|+| ++..++++.
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~ 364 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH--RHFQHLTPIKAAWHP-RYNLIVVGRY 364 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC--CCCSSSCCCBCEECS-SSSCEEEECC
T ss_pred eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc--cccccceeEEEEEcC-CCCEEEEEEc
Confidence 3457888999999999999999999999999999998876543221110 001111233456666 444555443
Q ss_pred -----------CCCcEEEEECCcceeeEEEeeeccCCceEEE-EEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 541 -----------ADSLVRVLCGENVVGKFKASAFRVAGSQMFA-TFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 541 -----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l-~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.++.|++||..+....... ...|...|.++ +|+|+|++|++|+ |+.|+|||+.+++
T Consensus 365 ~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l-~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 365 PDPNFKSCTPYELRTIDVFDGNSGKMMCQL-YDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp CCTTSCCSSTTCCCCEEEECSSSCCEEEEE-CCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCeEEEEecCCCEEEEEECCCCcEEEEE-eCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 3467999999876554443 14577788887 6999999999876 7899999999886
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.7e-34 Score=313.12 Aligned_cols=283 Identities=16% Similarity=0.145 Sum_probs=230.8
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
+....++|+|++++|++|+.|+.|++|+....... +.+..| ..+....|+|++++||+|+.||.|+|||+.+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-------KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-------TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee-------eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 33556999999999999999999999998754321 223445 4455667899999999999999999999876
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
++. ...+.+|...|.+++
T Consensus 129 ~~~--------------------------------------------------------------~~~~~~h~~~v~~~~ 146 (420)
T 3vl1_A 129 NLQ--------------------------------------------------------------REIDQAHVSEITKLK 146 (420)
T ss_dssp CEE--------------------------------------------------------------EEETTSSSSCEEEEE
T ss_pred cce--------------------------------------------------------------eeecccccCccEEEE
Confidence 543 233457999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec----cC
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DI 469 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~----~~ 469 (755)
|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++++.|+.|++||+++++.+... .+
T Consensus 147 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 225 (420)
T 3vl1_A 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 225 (420)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBT
T ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCC
Confidence 99999 99999999999999999999888885 999999999999 9999999999999999999998877433 23
Q ss_pred CcceEE---------------------EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 470 REIVSA---------------------VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 470 ~~~V~~---------------------v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
...+.+ ++|+|++++|++|+.||.|++||+++++..... ...+...|++++|
T Consensus 226 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~ 298 (420)
T 3vl1_A 226 HDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL-------PSKFTCSCNSLTV 298 (420)
T ss_dssp TCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE-------CCTTSSCEEEEEE
T ss_pred CCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc-------ccccCCCceeEEE
Confidence 334444 455789999999999999999999988765432 2245678999999
Q ss_pred cCCCCC-EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 529 SPSDPS-KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 529 sp~d~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+| ++. +|++++.|+.|++||..+...........|...+.++.+ +++++|++++.|+.|++|++..+.
T Consensus 299 ~~-~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 299 DG-NNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp CS-SCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred eC-CCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 99 555 999999999999999987644232222346677887755 588999999999999999998854
No 45
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.4e-33 Score=295.77 Aligned_cols=253 Identities=19% Similarity=0.282 Sum_probs=207.5
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
.+.+|.+.|++++|+|+|++||+|+.|++|+||++....
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~----------------------------------------- 42 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET----------------------------------------- 42 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----------------------------------------
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----------------------------------------
Confidence 467899999999999999999999999999999985431
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCcEE
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNYVT 432 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~V~ 432 (755)
.+.+.++.+|.+.|.+++|+++ + +|++++.|++|+|||+.+++ .+..+ .|...|.
T Consensus 43 -------------------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~ 103 (297)
T 2pm7_B 43 -------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN 103 (297)
T ss_dssp -------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE
T ss_pred -------------------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee
Confidence 1225667899999999999863 5 99999999999999998874 44444 4899999
Q ss_pred EEEEeeCC--CCEEEEEeCCCcEEEEEcCCCe---EEEeccCCcceEEEEEccC-------------CCeEEEEeCCCcE
Q 004410 433 SVAFNPVD--DNYFISGSIDGKVRIWEVRRCQ---VVDYTDIREIVSAVCYCPD-------------GKGGIVGTMTGNC 494 (755)
Q Consensus 433 ~i~fsp~d--~~~l~sgs~Dg~V~iwdl~~~~---~~~~~~~~~~V~~v~~spd-------------g~~la~gs~dg~I 494 (755)
+++|+| + +.+|++++.|++|++||+++.. ...+..|...|.+++|+|+ +++|++|+.|++|
T Consensus 104 ~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v 182 (297)
T 2pm7_B 104 SVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182 (297)
T ss_dssp EEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCE
T ss_pred EEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcE
Confidence 999999 5 7899999999999999998753 3456788899999999997 5799999999999
Q ss_pred EEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC--CCEEEEEECCCcEEEEECCcceeeE--EE-eeeccCCceE
Q 004410 495 RFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD--PSKVIVTSADSLVRVLCGENVVGKF--KA-SAFRVAGSQM 569 (755)
Q Consensus 495 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d--~~~l~s~s~Dg~I~iwd~~~~~~~~--~~-~~~~~~~~v~ 569 (755)
++||++++........ ....|...|.+++|+|+. +.+|++++.|++|+|||........ .. ....|...|.
T Consensus 183 ~lwd~~~~~~~~~~~~----~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~ 258 (297)
T 2pm7_B 183 KIWKYNSDAQTYVLES----TLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 258 (297)
T ss_dssp EEEEEETTTTEEEEEE----EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEE
T ss_pred EEEEEcCCCceEEEEE----EecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEE
Confidence 9999987652211111 133477899999999943 5899999999999999987642211 11 1135678899
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 570 FATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 570 ~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
+++|+|+|++|++++.|+.|+||+...
T Consensus 259 ~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 259 RASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999999999999999999999999864
No 46
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.9e-34 Score=307.15 Aligned_cols=298 Identities=16% Similarity=0.223 Sum_probs=235.3
Q ss_pred eeeeeccCcceeecCC----CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC----CCEEEEE
Q 004410 231 MARIIDRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----GQYLASG 302 (755)
Q Consensus 231 ~~~~~~~~~~~~~spd----g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd----g~~LaSg 302 (755)
..+|...+.+++|+|+ ...+++++.++.|+||+...... +..+. ......|.+.|.+++|+|+ +++|++|
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-IRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-EEEEE-EEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-EEeee-eccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 3467788999999994 45677777778999999875432 11110 0111237788999999999 6799999
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
+.||.|+|||+.+++. +.
T Consensus 92 ~~dg~i~v~d~~~~~~--------------------------------------------------------------~~ 109 (366)
T 3k26_A 92 GSRGIIRIINPITMQC--------------------------------------------------------------IK 109 (366)
T ss_dssp ETTCEEEEECTTTCCE--------------------------------------------------------------EE
T ss_pred cCCCEEEEEEchhceE--------------------------------------------------------------ee
Confidence 9999999999877643 33
Q ss_pred EecCCCCCEEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 383 EFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
.+.+|...|.+++|+| ++ +|++++.|+.|++||+.+++.+..+ .|...|.+++|+| ++++|++++.||.|++|
T Consensus 110 ~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~ 188 (366)
T 3k26_A 110 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLW 188 (366)
T ss_dssp EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEE
Confidence 4567999999999999 77 9999999999999999999999988 4999999999999 99999999999999999
Q ss_pred EcCCCeEEE-----------------------------eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 457 EVRRCQVVD-----------------------------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 457 dl~~~~~~~-----------------------------~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
|+++++... ...|...|.+++|+ +++|++++.||.|++||+.+......
T Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~ 266 (366)
T 3k26_A 189 RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDID 266 (366)
T ss_dssp ESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGG
T ss_pred ECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccc
Confidence 998765431 22288899999998 78999999999999999987643110
Q ss_pred e------eEEecccccCCCCCeEEEEEcCCC--CCEEEEEECCCcEEEEECCcceee--EEEeeecc--CCceEEEEEec
Q 004410 508 N------QICLQGKKKLPGKRITGFQFSPSD--PSKVIVTSADSLVRVLCGENVVGK--FKASAFRV--AGSQMFATFTS 575 (755)
Q Consensus 508 ~------~~~~~~~~~~~~~~I~~v~fsp~d--~~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~~~--~~~v~~l~fsp 575 (755)
. ..........+...|++++|+| + +.+|++++.||.|++||....... .......| ...|++++|+|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 267 KIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp GCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred ccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC
Confidence 0 0011112334667899999999 7 899999999999999998874321 21122344 78999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCC
Q 004410 576 DGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 576 dg~~L~sgs~Dg~I~iWd~~~ 596 (755)
++++|++++.||.|+|||+.+
T Consensus 346 ~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 346 DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TSSEEEEEETTSEEEEEEC--
T ss_pred CCCeEEEEeCCCEEEEEEecC
Confidence 999999999999999999853
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-32 Score=293.12 Aligned_cols=286 Identities=16% Similarity=0.230 Sum_probs=239.1
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
...+.+++|+|||++++++..++.+.+|........ ....+|.+.|.+++|+|++++|++++ ||.|++|++.
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~ 80 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ-------INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS 80 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE-------EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETT
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCcccc-------ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECC
Confidence 456888999999999999888777766654332211 22347999999999999999999999 9999999997
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
++.....+. .....+|...|.++
T Consensus 81 ~~~~~~~~~---------------------------------------------------------~~~~~~~~~~v~~~ 103 (337)
T 1gxr_A 81 HPGNKSPVS---------------------------------------------------------QLDCLNRDNYIRSC 103 (337)
T ss_dssp STTCCSCSE---------------------------------------------------------EEECSCTTSBEEEE
T ss_pred CCCceeeee---------------------------------------------------------cccccCCCCcEEEE
Confidence 764211100 11123688999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccC
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI 469 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~ 469 (755)
+|+|++ +|++++.|+.|++||+.+++ ....+ .|...|++++|+| ++++|++++.||.|++||+++++.+ .+..|
T Consensus 104 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 182 (337)
T 1gxr_A 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecc
Confidence 999999 89999999999999999887 34444 4889999999999 9999999999999999999998877 56678
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
...|.+++|+|++++|++++.||.|++||+++++..... .+...+.+++|+| ++.++++++.++.|++||
T Consensus 183 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---------~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~ 252 (337)
T 1gxr_A 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---------DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLH 252 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---------ECSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee---------cCCCceEEEEECC-CCCEEEEEcCCCcEEEEE
Confidence 899999999999999999999999999999998876532 1456799999999 899999999999999999
Q ss_pred CCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
....... . ...|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 253 ~~~~~~~-~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 253 VNKPDKY-Q--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp TTSSCEE-E--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCCeE-E--EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 9875432 2 267889999999999999999999999999999998863
No 48
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.9e-33 Score=305.87 Aligned_cols=314 Identities=13% Similarity=0.014 Sum_probs=224.8
Q ss_pred cCcceeecCCCCeeEEeeCC-------CeEEEEECCCCccccc-cccc--ceeeecccccEEEEEEecCCCEEEEEc---
Q 004410 237 RHGSATLKPGDHELTLGQRM-------RRVRVHPVKKQSRELS-SLYT--GQEFLAHEGSILTMKFSLDGQYLASGG--- 303 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~d-------g~V~Vw~~~~~~~~~~-~~~~--~~~l~~H~~~V~~l~fspdg~~LaSgs--- 303 (755)
+|.+++|+||+++|++|+.+ +.|+||++........ .+.. ...+.+|...|.+++++ ++.+++|.
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~ 93 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNEN 93 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCC
Confidence 57889999999999998753 3699999865432211 1111 12467888899888764 56777764
Q ss_pred --------CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCccee
Q 004410 304 --------EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (755)
Q Consensus 304 --------~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (755)
.|+.+++|++.......... .
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~-----------------------------------~---------------- 122 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFL-----------------------------------T---------------- 122 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEE-----------------------------------E----------------
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEe-----------------------------------e----------------
Confidence 46677777765432110000 0
Q ss_pred ccCccceEecCCCCCEEEEEEcCCC-eEEE--EeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCc
Q 004410 376 LLEKPLHEFQGHSSEVLDLSWSKNG-FLLS--SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK 452 (755)
Q Consensus 376 ~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s--~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~ 452 (755)
.........+...+..++|+||| +|++ ++.|++|+|||+.+++++..+.|...|++++|+| ++++|++++.+ .
T Consensus 123 --~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~ 198 (365)
T 4h5i_A 123 --SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-S 198 (365)
T ss_dssp --EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-C
T ss_pred --eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce-e
Confidence 00011123456678999999999 6654 4579999999999999999999999999999999 99999999855 5
Q ss_pred EEEEEcCCCeEE---EeccCCcceEEEEEccCCCeEEEEeCCC----cEEEEECCCCeEeeeeeEEecccccCCCCCeEE
Q 004410 453 VRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTG----NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525 (755)
Q Consensus 453 V~iwdl~~~~~~---~~~~~~~~V~~v~~spdg~~la~gs~dg----~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~ 525 (755)
+++|+..+++.+ ....|...|.+++|+|+++.+++++.++ .+++|++............ ...+...|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~V~~ 274 (365)
T 4h5i_A 199 LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ----VTNRFKGITS 274 (365)
T ss_dssp EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE----EESSCSCEEE
T ss_pred EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee----ecCCCCCeEe
Confidence 666666665544 2445778899999999999999999887 5888998876643322211 2346678999
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC-cccCCC
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD-KSSSRS 604 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~-~~~~~~ 604 (755)
++|+| ++++|++|+.|+.|+|||..+....... ..+|...|++++|+|||++||+||.|++|+||++.... ......
T Consensus 275 ~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~-~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~~ 352 (365)
T 4h5i_A 275 MDVDM-KGELAVLASNDNSIALVKLKDLSMSKIF-KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTSMK 352 (365)
T ss_dssp EEECT-TSCEEEEEETTSCEEEEETTTTEEEEEE-TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC-----
T ss_pred EEECC-CCCceEEEcCCCEEEEEECCCCcEEEEe-cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCccCcc
Confidence 99999 9999999999999999999886554432 25799999999999999999999999999999997654 233334
Q ss_pred ccccceeee
Q 004410 605 KSIWSCESF 613 (755)
Q Consensus 605 ~~~~~~~~f 613 (755)
+.++..++.
T Consensus 353 ~~l~kl~~~ 361 (365)
T 4h5i_A 353 QKISKLEHH 361 (365)
T ss_dssp ---------
T ss_pred ccceeeecc
Confidence 444444443
No 49
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-32 Score=297.18 Aligned_cols=250 Identities=17% Similarity=0.292 Sum_probs=213.9
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.+++.+|.+.|++++|+|++++||||+.||+|+|||..+++..
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~------------------------------------- 99 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE------------------------------------- 99 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-------------------------------------
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc-------------------------------------
Confidence 4568899999999999999999999999999999998766432
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC------eEEEE-EecC
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID------RCLRV-FSHN 428 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~------~~~~~-~~h~ 428 (755)
..+..|...|.+++|+|++ .|++++.|+.|++|++... ..... ..|.
T Consensus 100 -------------------------~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~ 154 (354)
T 2pbi_B 100 -------------------------HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT 154 (354)
T ss_dssp -------------------------EEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS
T ss_pred -------------------------eEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC
Confidence 3344577889999999999 9999999999999998643 12223 3599
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEcc--CCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCP--DGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~sp--dg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
..|.+++|+| ++..|++++.|++|++||+.+++.+ .+..|...|.+++|+| +|++|++|+.||.|++||+++++.+
T Consensus 155 ~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~ 233 (354)
T 2pbi_B 155 NYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 233 (354)
T ss_dssp SCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEE
T ss_pred CcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 9999999999 8999999999999999999998877 5778899999999988 5789999999999999999998876
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
.. ...|...|++++|+| ++.+|++++.|++|++||+.............+...+.+++|+|+|++|++|+.
T Consensus 234 ~~--------~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~ 304 (354)
T 2pbi_B 234 QA--------FETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304 (354)
T ss_dssp EE--------ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred EE--------ecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC
Confidence 43 234678999999999 889999999999999999987654443322234457899999999999999999
Q ss_pred CCcEEEEEcCCCC
Q 004410 586 DSNIYIWNYSNQD 598 (755)
Q Consensus 586 Dg~I~iWd~~~~~ 598 (755)
|+.|+|||+.+++
T Consensus 305 d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 305 DYTINVWDVLKGS 317 (354)
T ss_dssp TSCEEEEETTTCS
T ss_pred CCcEEEEECCCCc
Confidence 9999999998776
No 50
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-34 Score=312.97 Aligned_cols=290 Identities=11% Similarity=0.113 Sum_probs=221.6
Q ss_pred eeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 234 ~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
+...+.+++|+|++++||+|+.|+.|+||++..... ...+.+.+|.+.|.+++|+|++++|++++.|+.|+|||+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 346789999999999999999999999999765421 233457889999999999999999999999999999999
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.+++.. .+...+.+|...|.+
T Consensus 85 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~~v~~ 105 (377)
T 3dwl_C 85 RPDGTW-----------------------------------------------------------KQTLVLLRLNRAATF 105 (377)
T ss_dssp ----CC-----------------------------------------------------------CCEEECCCCSSCEEE
T ss_pred CCCCce-----------------------------------------------------------eeeeEecccCCceEE
Confidence 765410 123445679999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeE---EEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC--------
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRC---LRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-------- 459 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~---~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~-------- 459 (755)
++|+|++ +|++++.|+.|++||+.+++. ...+. |...|++++|+| ++++|++++.|+.|++||+.
T Consensus 106 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 106 VRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp EECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred EEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 9999999 999999999999999998873 55553 899999999999 99999999999999999985
Q ss_pred ----------CCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 460 ----------RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 460 ----------~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
.++++....|...|++++|+|++++|++++.||.|++||+.++..... .......|...|++++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~v~~~~~s 260 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR----ALITVKLSQLPLRSLLWA 260 (377)
T ss_dssp CSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE----ECCCEECSSSCEEEEEEE
T ss_pred cccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce----eeEeecCCCCceEEEEEc
Confidence 244443338889999999999999999999999999999998875211 011234467789999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCcce--------------------------------------eeEEE------------
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVV--------------------------------------GKFKA------------ 559 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~--------------------------------------~~~~~------------ 559 (755)
| ++.+|++++.++.+ +|+..... ..+..
T Consensus 261 ~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 338 (377)
T 3dwl_C 261 N-ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISS 338 (377)
T ss_dssp E-TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CC
T ss_pred C-CCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 9 88888888766555 66654211 00100
Q ss_pred eeeccCCceEEEEEecCC-C---EEEEEeCCCcEEEEEc
Q 004410 560 SAFRVAGSQMFATFTSDG-K---HVVSPSEDSNIYIWNY 594 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg-~---~L~sgs~Dg~I~iWd~ 594 (755)
....|...|+++++.+.. . .|+||+.||.|+|||+
T Consensus 339 ~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 339 LPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 001288899999976543 3 6999999999999986
No 51
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-32 Score=300.94 Aligned_cols=286 Identities=21% Similarity=0.321 Sum_probs=234.2
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeee-cccccEEEEEEecCCCEEEEEcCCCcEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~fspdg~~LaSgs~Dg~I~vW 311 (755)
++.+.+....+++++..+++++.|+.|+||+...+... +.+. .|.+.|.+++|+|++++|++|+.||.|+||
T Consensus 89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~-------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVS-------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEE-------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEe-------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 45555555455555677889999999999998765421 2222 389999999999999999999999999999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
|+.+++. +..+.+|...|
T Consensus 162 d~~~~~~--------------------------------------------------------------~~~~~~~~~~v 179 (401)
T 4aez_A 162 DVESQTK--------------------------------------------------------------LRTMAGHQARV 179 (401)
T ss_dssp ETTTCCE--------------------------------------------------------------EEEECCCSSCE
T ss_pred ECcCCeE--------------------------------------------------------------EEEecCCCCce
Confidence 9977643 34456799999
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEeCC-CCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Eecc
Q 004410 392 LDLSWSKNGFLLSSSADKTVRLWQVG-IDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTD 468 (755)
Q Consensus 392 ~~l~~s~~~~L~s~s~Dg~V~iWdl~-s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~ 468 (755)
.+++|++ ..|++++.|+.|++||++ ....+..+ .|...|.+++|+| ++++|++|+.|+.|++||+++++.+ .+..
T Consensus 180 ~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 257 (401)
T 4aez_A 180 GCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTN 257 (401)
T ss_dssp EEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECC
T ss_pred EEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecC
Confidence 9999943 399999999999999998 45556665 5999999999999 9999999999999999999988776 5667
Q ss_pred CCcceEEEEEccCCCeE-EEEe--CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE--CCC
Q 004410 469 IREIVSAVCYCPDGKGG-IVGT--MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS--ADS 543 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~l-a~gs--~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s--~Dg 543 (755)
|...|.+++|+|++..+ ++|+ .||.|++||+.+++...... +...|++++|+| ++.++++++ .|+
T Consensus 258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---------~~~~v~~~~~s~-~~~~l~~~~g~~dg 327 (401)
T 4aez_A 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---------AGSQVTSLIWSP-HSKEIMSTHGFPDN 327 (401)
T ss_dssp CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---------CSSCEEEEEECS-SSSEEEEEECTTTC
T ss_pred CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---------CCCcEEEEEECC-CCCeEEEEeecCCC
Confidence 89999999999977554 5544 69999999999988765432 346899999999 888888854 899
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.|++|+..+...........|...|.+++|+|+|++|++++.||.|++|++.+++.
T Consensus 328 ~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred cEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 99999998855554444477999999999999999999999999999999998873
No 52
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.8e-33 Score=348.61 Aligned_cols=349 Identities=17% Similarity=0.236 Sum_probs=275.1
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCC
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGED 305 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~D 305 (755)
+..+.+|...+.+++|+|++++||+|+.|+.|+||+..++. ..+.+.+|.+.|.+++|+| ++.+|++|+.|
T Consensus 650 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d 722 (1249)
T 3sfz_A 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 722 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSCCEEEEEETT
T ss_pred EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCC
Confidence 34566778888999999999999999999999999987543 3456789999999999999 55699999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCC--------ceeEEeecCcceeee----------------------
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS--------QLIPIDVDKEKIDKT---------------------- 355 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~---------------------- 355 (755)
+.|++||+.+++....+..+...+.++.|.++... .+..++.........
T Consensus 723 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1249)
T 3sfz_A 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802 (1249)
T ss_dssp SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBC
T ss_pred CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEE
Confidence 99999999999998888888877777777765431 122222211110000
Q ss_pred ---------------------------------------------------eeeeecCCceEEEeCCcceeccCccceEe
Q 004410 356 ---------------------------------------------------KSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 356 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
..+.++.++.+.+|+... ...+..+
T Consensus 803 ~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~----~~~~~~~ 878 (1249)
T 3sfz_A 803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS----RLKVADC 878 (1249)
T ss_dssp CCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT----TEEEEEE
T ss_pred EEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC----Cceeeec
Confidence 011112222233332221 3445677
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC---------------------------------------------
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--------------------------------------------- 418 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s--------------------------------------------- 418 (755)
.+|...|.+++|+|++ .|++++.|++|++||+.+
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY 958 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence 8999999999999998 899999999999998431
Q ss_pred ----------------------------------CeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 419 ----------------------------------DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 419 ----------------------------------~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
++.+..+ .|...|++++|+| ++++|++++.||.|++||+.+++.
T Consensus 959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEE
T ss_pred cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCce
Confidence 1222222 3788899999999 999999999999999999999999
Q ss_pred EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.....|...|.+++|+|++ .+++++.||.|++||+.+++.... ...|...|++++|+| ++.++++++.|+
T Consensus 1038 ~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~--------~~~~~~~v~~~~~s~-d~~~l~s~s~d~ 1107 (1249)
T 3sfz_A 1038 VFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERD--------FTCHQGTVLSCAISS-DATKFSSTSADK 1107 (1249)
T ss_dssp ECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEE--------EECCSSCCCCEEECS-SSSSCEEECCSS
T ss_pred EEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEE--------EcccCCcEEEEEECC-CCCEEEEEcCCC
Confidence 9888999999999999976 578889999999999999886643 234677899999999 899999999999
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
.|++||..+....... ..|...|++++|+|+|++|++++.||.|++||+.+++..
T Consensus 1108 ~v~iwd~~~~~~~~~l--~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1108 TAKIWSFDLLSPLHEL--KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp CCCEECSSSSSCSBCC--CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred cEEEEECCCcceeeee--ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 9999998876544433 578899999999999999999999999999999988743
No 53
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.2e-32 Score=286.98 Aligned_cols=250 Identities=28% Similarity=0.535 Sum_probs=214.6
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
...++.+|.+.|++++|+|++++||+|+.||.|+||++.+++.
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~------------------------------------- 57 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF------------------------------------- 57 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------------------------------
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc-------------------------------------
Confidence 3456789999999999999999999999999999999876643
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEE
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS 433 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~ 433 (755)
...+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|.+
T Consensus 58 -------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 112 (312)
T 4ery_A 58 -------------------------EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 112 (312)
T ss_dssp -------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred -------------------------chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence 23456799999999999999 99999999999999999999988885 8999999
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe
Q 004410 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
++|+| ++++|++|+.|+.|++||+++++.+ .+..|...|.+++|+|++++|++++.||.|++||+++++.+...
T Consensus 113 ~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---- 187 (312)
T 4ery_A 113 CNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---- 187 (312)
T ss_dssp EEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE----
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE----
Confidence 99999 9999999999999999999988776 56778889999999999999999999999999999988765432
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCce--EEEEE-ecCCCEEEEEeCCCcE
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQ--MFATF-TSDGKHVVSPSEDSNI 589 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v--~~l~f-spdg~~L~sgs~Dg~I 589 (755)
...+...+..++|+| ++.+|++++.|+.|++||..+....... ..|...+ ....+ .+++.+|++|+.||.|
T Consensus 188 ---~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i 261 (312)
T 4ery_A 188 ---IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261 (312)
T ss_dssp ---CCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEE--CSSCCSSSCCCEEEECSSSCEEEECCTTSCE
T ss_pred ---eccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEE--EecCCceEEEEEEEEeCCCcEEEEECCCCEE
Confidence 123456799999999 8999999999999999999886654444 3443332 22334 4688999999999999
Q ss_pred EEEEcCCCC
Q 004410 590 YIWNYSNQD 598 (755)
Q Consensus 590 ~iWd~~~~~ 598 (755)
++||+.+++
T Consensus 262 ~vwd~~~~~ 270 (312)
T 4ery_A 262 YIWNLQTKE 270 (312)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCch
Confidence 999998876
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=313.71 Aligned_cols=306 Identities=10% Similarity=0.121 Sum_probs=236.6
Q ss_pred cce-eeeeccCcceeecC-CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 229 GAM-ARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 229 ~~~-~~~~~~~~~~~~sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
..+ .+|.+.+.+++|+| ++++||+|+.||+|+||++....... ....... .+|.+.|.+|+|+|++++|++|+.||
T Consensus 56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg 133 (437)
T 3gre_A 56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLT-YDCSSTVTQITMIPNFDAFAVSSKDG 133 (437)
T ss_dssp EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceeee-ccCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 344 56778899999999 99999999999999999976421111 1111222 25999999999999999999999999
Q ss_pred cEEEEEcc---CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 307 TVRVWKVI---EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 307 ~I~vWdv~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|+|||+. +++....+..+ .+..
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~~~------------------------------------------------------~i~~ 159 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLNCE------------------------------------------------------CIRK 159 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEEEE------------------------------------------------------EEEE
T ss_pred EEEEEEeccccCCceeeccccc------------------------------------------------------eeEE
Confidence 99999985 33332221100 0111
Q ss_pred --ecC--CCCCEEEEE--EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 004410 384 --FQG--HSSEVLDLS--WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKV 453 (755)
Q Consensus 384 --~~g--h~~~V~~l~--~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V 453 (755)
+.. +...+.++. +++++ +|++++.|+.|++||+++++++..+. |...|++++|+| ++++|++|+.||.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i 238 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGII 238 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCE
T ss_pred EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeE
Confidence 111 567788888 56788 99999999999999999999998885 789999999999 89999999999999
Q ss_pred EEEEcCCCeEEEe-c-cCCcceEEEEEcc----CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc-------------
Q 004410 454 RIWEVRRCQVVDY-T-DIREIVSAVCYCP----DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG------------- 514 (755)
Q Consensus 454 ~iwdl~~~~~~~~-~-~~~~~V~~v~~sp----dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~------------- 514 (755)
++||+++++.+.. . .+...|++++|+| ++.+|++|+.||.|++||+++++.+..+......
T Consensus 239 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (437)
T 3gre_A 239 DIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL 318 (437)
T ss_dssp EEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG
T ss_pred EEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc
Confidence 9999999988753 3 6778999996665 6889999999999999999998876654311000
Q ss_pred ---cc--cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee----------------------------
Q 004410 515 ---KK--KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA---------------------------- 561 (755)
Q Consensus 515 ---~~--~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~---------------------------- 561 (755)
.. ..+...|++++|+ ++.+|++++.|+.|++||+.+.........
T Consensus 319 ~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (437)
T 3gre_A 319 EELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTS 396 (437)
T ss_dssp GGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---
T ss_pred ccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccc
Confidence 00 1256679999999 458999999999999999876543332210
Q ss_pred -------eccCCceEEEEEecC--CCEEEEEeCCCcEEEEE
Q 004410 562 -------FRVAGSQMFATFTSD--GKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 562 -------~~~~~~v~~l~fspd--g~~L~sgs~Dg~I~iWd 593 (755)
..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 397 ~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 397 THSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 128889999999998 88999999999999995
No 55
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4e-32 Score=314.61 Aligned_cols=345 Identities=17% Similarity=0.164 Sum_probs=263.6
Q ss_pred ccceeeeeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccc---cEEEEEEecC-CCEEEEE
Q 004410 228 LGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLD-GQYLASG 302 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~fspd-g~~LaSg 302 (755)
+..+..|...+.+++|+|+++ ++++++.|+.|++|+..... ..+.+.+|.+ .|.+++|+|+ +++|+++
T Consensus 153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (615)
T 1pgu_A 153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-------FSASDRTHHKQGSFVRDVEFSPDSGEFVITV 225 (615)
T ss_dssp EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-------EEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-------eeeeecccCCCCceEEEEEECCCCCCEEEEE
Confidence 344556778888999999998 89999999999999966432 3456788999 9999999999 9999999
Q ss_pred cCCCcEEEEEccCCeeeeee-e---cCCCCCceeEEeeCCC--------CceeEEeecCccee-----------------
Q 004410 303 GEDGTVRVWKVIEHERLDGF-D---VQDTDPSCLYFTINHL--------SQLIPIDVDKEKID----------------- 353 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~-~---~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~----------------- 353 (755)
+.||.|++||+.+++.+..+ . .+...+.++.|. +.. ..+..++.......
T Consensus 226 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 99999999999999988888 4 566666666666 221 11222222211110
Q ss_pred ----eeeeeeecCCceEEEeCCcceeccCccceEec---------------------------------CCCCCEEEEEE
Q 004410 354 ----KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ---------------------------------GHSSEVLDLSW 396 (755)
Q Consensus 354 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------gh~~~V~~l~~ 396 (755)
....+.++.++.+.+|+.... +++..+. +|...|.+++|
T Consensus 305 ~~~~~~~l~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~ 380 (615)
T 1pgu_A 305 VATGNGRIISLSLDGTLNFYELGHD----EVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380 (615)
T ss_dssp EEEETTEEEEEETTSCEEEEETTEE----EEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred EeCCCCeEEEEECCCCEEEEECCCC----cEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence 112233445555666654431 2233343 45555666666
Q ss_pred cCCCeEEEEeCCCcEEEEeCC----------------------------------CCeEEEEEecCCcEEEEEEeeCCCC
Q 004410 397 SKNGFLLSSSADKTVRLWQVG----------------------------------IDRCLRVFSHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 397 s~~~~L~s~s~Dg~V~iWdl~----------------------------------s~~~~~~~~h~~~V~~i~fsp~d~~ 442 (755)
.+.+.|++++.|+.|++||+. +++.+..+.+...+++++|+ ++
T Consensus 381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 457 (615)
T 1pgu_A 381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS---QN 457 (615)
T ss_dssp CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC---SS
T ss_pred CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc---CC
Confidence 333488888888888888765 45566666788899999997 78
Q ss_pred EEEEEeC-CCcEEEEEcCCCeE--EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC
Q 004410 443 YFISGSI-DGKVRIWEVRRCQV--VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP 519 (755)
Q Consensus 443 ~l~sgs~-Dg~V~iwdl~~~~~--~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~ 519 (755)
+|++++. |+.|++||+.+++. ..+..|...|++++|+|+|++|++++.||.|++||+.+++.+... ...|
T Consensus 458 ~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~-------~~~h 530 (615)
T 1pgu_A 458 YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-------WAFR 530 (615)
T ss_dssp EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC-------SCCC
T ss_pred EEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEe-------ecCC
Confidence 9999999 99999999999877 456778899999999999999999999999999999998876431 1126
Q ss_pred CCCeEEEEEcCC---------CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEE
Q 004410 520 GKRITGFQFSPS---------DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590 (755)
Q Consensus 520 ~~~I~~v~fsp~---------d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~ 590 (755)
...|++++|+|. ++.+|++++.|+.|++||..+...... ....|...|++++|+|+++ |++++.||.|+
T Consensus 531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~ 608 (615)
T 1pgu_A 531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK-ALNAHKDGVNNLLWETPST-LVSSGADACIK 608 (615)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE-ETTSSTTCEEEEEEEETTE-EEEEETTSCEE
T ss_pred CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech-hhhcCccceEEEEEcCCCC-eEEecCCceEE
Confidence 789999999994 678999999999999999987632222 2267899999999999999 99999999999
Q ss_pred EEEcCC
Q 004410 591 IWNYSN 596 (755)
Q Consensus 591 iWd~~~ 596 (755)
+|++..
T Consensus 609 iw~~~~ 614 (615)
T 1pgu_A 609 RWNVVL 614 (615)
T ss_dssp EEEEC-
T ss_pred EEeeec
Confidence 999875
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.3e-31 Score=298.21 Aligned_cols=285 Identities=22% Similarity=0.338 Sum_probs=238.7
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
....+.+|.+.+.. ++.+++++|++|+.||.|++|+..... ....+.+|.+.|++++|+|++ +|++|+.||
T Consensus 113 ~~~~l~~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~~~-------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 113 QRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EEEEEECCSSSCEE-EEEEETTEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECSTT-EEEEEETTS
T ss_pred ceEEEcCCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCCCc-------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCC
Confidence 34456777766532 344567899999999999999976543 345678999999999999988 999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+|++||+.+++. +..+.+
T Consensus 184 ~i~vwd~~~~~~--------------------------------------------------------------~~~~~~ 201 (464)
T 3v7d_B 184 TVRVWDIKKGCC--------------------------------------------------------------THVFEG 201 (464)
T ss_dssp CEEEEETTTTEE--------------------------------------------------------------EEEECC
T ss_pred CEEEEECCCCcE--------------------------------------------------------------EEEECC
Confidence 999999987753 334567
Q ss_pred CCCCEEEEEEc--CCC-eEEEEeCCCcEEEEeCCCCeE-----------------------EEEE-ecCCcEEEEEEeeC
Q 004410 387 HSSEVLDLSWS--KNG-FLLSSSADKTVRLWQVGIDRC-----------------------LRVF-SHNNYVTSVAFNPV 439 (755)
Q Consensus 387 h~~~V~~l~~s--~~~-~L~s~s~Dg~V~iWdl~s~~~-----------------------~~~~-~h~~~V~~i~fsp~ 439 (755)
|...|.+++|+ +++ +|++++.|++|++||+.++.. +..+ .|...|.++ ++
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~- 278 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG- 278 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE-
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC-
Confidence 99999999998 465 899999999999999987753 2233 478888887 46
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
++++|++|+.||.|++||+++++.+ .+..|...|.+++|+|++++|++|+.||.|++||+++++.+.. ...
T Consensus 279 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--------~~~ 350 (464)
T 3v7d_B 279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT--------LQG 350 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE--------ECC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--------EeC
Confidence 7899999999999999999998877 5677899999999999999999999999999999999887654 234
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|...|++++|++ .++++++.|+.|++||..+....+.. .+...+..++|++++++|++++ ||.|+|||+.+++
T Consensus 351 h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 351 HTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSY---HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp CSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEE---ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred CCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeee---cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 678899999974 89999999999999999987655553 3666788899999999999999 8999999999988
Q ss_pred cc
Q 004410 599 KS 600 (755)
Q Consensus 599 ~~ 600 (755)
..
T Consensus 424 ~~ 425 (464)
T 3v7d_B 424 LV 425 (464)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 57
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.9e-31 Score=284.90 Aligned_cols=274 Identities=20% Similarity=0.264 Sum_probs=214.0
Q ss_pred EEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCC
Q 004410 251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329 (755)
Q Consensus 251 asgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~ 329 (755)
++|...|...+|-..... ..+....+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+.+...
T Consensus 8 ~~g~d~g~~~~~~~~~~~---~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--------- 75 (340)
T 4aow_A 8 SSGVDLGTENLYFQSMMT---EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--------- 75 (340)
T ss_dssp ---------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS---------
T ss_pred ccccCCCCccEEEEEccC---CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc---------
Confidence 345555654444322211 222344678999999999999997 6899999999999999987654211
Q ss_pred ceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCC
Q 004410 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD 408 (755)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~D 408 (755)
..+...+.+|...|.+++|+|++ +|++++.|
T Consensus 76 ------------------------------------------------~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 76 ------------------------------------------------GIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp ------------------------------------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ------------------------------------------------ceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 12345678999999999999999 99999999
Q ss_pred CcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--EeccCCcceEEEEEccCC--C
Q 004410 409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDG--K 483 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~~~~~V~~v~~spdg--~ 483 (755)
+.|++|+........... +...+..+.+++ ++++|++++.|+.+++||+...... ....|...+..++|++++ .
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence 999999999988877774 778889999998 8999999999999999999876654 356678899999999865 5
Q ss_pred eEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeec
Q 004410 484 GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFR 563 (755)
Q Consensus 484 ~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 563 (755)
.+++++.|+.|++||+.+++.... ...|...|++++|+| ++.+|++++.|+.|++||..+....... .
T Consensus 187 ~~~s~~~d~~i~i~d~~~~~~~~~--------~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~---~ 254 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLANCKLKTN--------HIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTL---D 254 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEE--------ECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEE---E
T ss_pred EEEEEcCCCEEEEEECCCCceeeE--------ecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeee---c
Confidence 678899999999999999887653 234678999999999 8999999999999999999887655443 3
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 564 VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 564 ~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+...+..++|+|++.++ +++.|+.|+|||+.++.
T Consensus 255 ~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 255 GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKI 288 (340)
T ss_dssp CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTE
T ss_pred CCceEEeeecCCCCcee-eccCCCEEEEEECCCCe
Confidence 55789999999987654 56679999999987654
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1e-32 Score=304.57 Aligned_cols=278 Identities=19% Similarity=0.253 Sum_probs=229.6
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeee
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~ 319 (755)
...++|++++|++|+.||.|+||++.... ..+.+.+|.+.|.+++|+|++++|++|+.|+.|++||+.+++.
T Consensus 102 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~- 173 (420)
T 3vl1_A 102 VDTAKLQMRRFILGTTEGDIKVLDSNFNL-------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN- 173 (420)
T ss_dssp EEEECSSSCEEEEEETTSCEEEECTTSCE-------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-
T ss_pred EEEEecCCCEEEEEECCCCEEEEeCCCcc-------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-
Confidence 35789999999999999999999976433 2344578999999999999999999999999999999976642
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
+..+.+|...|.+++|+|+
T Consensus 174 -------------------------------------------------------------~~~~~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 174 -------------------------------------------------------------PRTLIGHRATVTDIAIIDR 192 (420)
T ss_dssp -------------------------------------------------------------CEEEECCSSCEEEEEEETT
T ss_pred -------------------------------------------------------------ceEEcCCCCcEEEEEEcCC
Confidence 3456689999999999999
Q ss_pred C-eEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEE---------------------eeCCCCEEEEEeCCCcE
Q 004410 400 G-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAF---------------------NPVDDNYFISGSIDGKV 453 (755)
Q Consensus 400 ~-~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~f---------------------sp~d~~~l~sgs~Dg~V 453 (755)
+ +|++++.|++|++||+.+++++..+. +...|.+++| +| ++++|++|+.||.|
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 271 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVI 271 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCE
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeE
Confidence 9 99999999999999999999998884 5556666665 56 78899999999999
Q ss_pred EEEEcCCCeEEE-e-ccCCcceEEEEEccCCC-eEEEEeCCCcEEEEECCCCeE-eeeeeEEecccccCCCCCeEEEEEc
Q 004410 454 RIWEVRRCQVVD-Y-TDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 454 ~iwdl~~~~~~~-~-~~~~~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~~~~-~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
++||+++++.+. . ..|...|++++|+|++. +|++|+.||.|++||++++.. +... ...+...|+++.+.
T Consensus 272 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~v~~~~~~ 344 (420)
T 3vl1_A 272 TVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF-------LINEGTPINNVYFA 344 (420)
T ss_dssp EEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-------EESTTSCEEEEEEE
T ss_pred EEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh-------hccCCCCceEEEeC
Confidence 999999987663 3 34778999999999999 999999999999999998753 2211 11245678888665
Q ss_pred CCCCCEEEEEECCCcEEEEECCcceee-------EEEeeeccCCceEEEEEecCCC---EEEEEeCCCcEEEEEcCC
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVVGK-------FKASAFRVAGSQMFATFTSDGK---HVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~~~-------~~~~~~~~~~~v~~l~fspdg~---~L~sgs~Dg~I~iWd~~~ 596 (755)
++.+|++++.|+.|++|++...... .......+...|.+++|+|+++ .|++++.+|.+.+|++++
T Consensus 345 --~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 345 --AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp --TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred --CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 5679999999999999997762111 0111256788999999999999 888888999999999875
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.3e-31 Score=295.68 Aligned_cols=324 Identities=19% Similarity=0.285 Sum_probs=264.9
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
....+.+|.+.+.. ++++++++|++|+.||.|+||+..... ....+.+|.+.|++++|+ +++|++|+.||
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-------CLRTLVGHTGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------EEEECCCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc-------EEEEEcCCCCCEEEEEec--CCEEEEEeCCC
Confidence 34456677665532 467789999999999999999986543 335678999999999997 67999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|++||+.+++.+..+..+...+.++.+.. ...+.++.++.+.+|+... .+.+..+.+
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~------------------~~l~s~s~dg~i~~wd~~~----~~~~~~~~~ 237 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTVRCMHLHE------------------KRVVSGSRDATLRVWDIET----GQCLHVLMG 237 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEET------------------TEEEEEETTSEEEEEESSS----CCEEEEEEC
T ss_pred eEEEEECCcCcEEEEECCCCCcEEEEEecC------------------CEEEEEeCCCEEEEEECCC----CcEEEEEcC
Confidence 999999999998888776665555554421 1245667788888887654 355778889
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
|...|.+++| ++ .|++++.|+.|++||+.+++++..+. |...|.+++| ++.++++|+.||.|++||+++++.+
T Consensus 238 ~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 238 HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp CSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEE
Confidence 9999999999 45 99999999999999999999998885 8999999998 6789999999999999999998877
Q ss_pred -EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 465 -DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 465 -~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.+..|...+.++.+ ++++|++|+.||.|++||+++++....+. . ...+...|++++|++ .++++++.||
T Consensus 313 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~-~~~~~~~v~~~~~~~---~~l~s~~~dg 382 (445)
T 2ovr_B 313 HTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQ----G-PNKHQSAVTCLQFNK---NFVITSSDDG 382 (445)
T ss_dssp EEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC----S-TTSCSSCEEEEEECS---SEEEEEETTS
T ss_pred EEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEc----c-CCCCCCCEEEEEECC---CEEEEEeCCC
Confidence 56678888888777 56799999999999999999887765322 1 223678899999964 8999999999
Q ss_pred cEEEEECCcceeeEEEe---eeccCCceEEEEEecCCCEEEEEeCCCc----EEEEEcCCC
Q 004410 544 LVRVLCGENVVGKFKAS---AFRVAGSQMFATFTSDGKHVVSPSEDSN----IYIWNYSNQ 597 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~---~~~~~~~v~~l~fspdg~~L~sgs~Dg~----I~iWd~~~~ 597 (755)
.|++||..+........ ...+.+.|.+++|+|++.+|++|+.||+ |.|||+...
T Consensus 383 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999998765444331 1357789999999999999999999998 999999864
No 60
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.6e-31 Score=296.12 Aligned_cols=279 Identities=19% Similarity=0.308 Sum_probs=228.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
.+.++|+++ ++||+|. |++|+|||..++... ..-.+.+|.+.|++|+|+|||++||+|+.||.|+|||+.+++
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-----~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-----QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-----EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-----EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 345899986 4777775 899999998765421 111345788999999999999999999999999999998775
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
. +..+.+|...|.+++|+
T Consensus 181 ~--------------------------------------------------------------~~~~~~h~~~v~~~s~~ 198 (420)
T 4gga_A 181 R--------------------------------------------------------------LRNMTSHSARVGSLSWN 198 (420)
T ss_dssp E--------------------------------------------------------------EEEECCCSSCEEEEEEE
T ss_pred E--------------------------------------------------------------EEEEeCCCCceEEEeeC
Confidence 4 34456799999999886
Q ss_pred CCCeEEEEeCCCcEEEEeCCCC-eEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe-----EEEeccCC
Q 004410 398 KNGFLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-----VVDYTDIR 470 (755)
Q Consensus 398 ~~~~L~s~s~Dg~V~iWdl~s~-~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-----~~~~~~~~ 470 (755)
+. .|++++.|+.+++||.... ..+..+ .|...+..+.++| ++.++++++.|+.|++|+...++ ......+.
T Consensus 199 ~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 4gga_A 199 SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276 (420)
T ss_dssp TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred CC-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence 43 8999999999999998764 344444 5999999999999 99999999999999999998764 23567788
Q ss_pred cceEEEEEccCCC-eEEE--EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE--CCCcE
Q 004410 471 EIVSAVCYCPDGK-GGIV--GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS--ADSLV 545 (755)
Q Consensus 471 ~~V~~v~~spdg~-~la~--gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s--~Dg~I 545 (755)
..|.+++|+|++. .+++ |+.|++|++||+.++....... ....+..+.|+| ++..+++++ .|+.|
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~---------~~~~v~~~~~~~-~~~~lv~~sg~~d~~I 346 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD---------AHSQVCSILWSP-HYKELISGHGFAQNQL 346 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE---------CSSCEEEEEEET-TTTEEEEEECTTTCCE
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec---------cccceeeeeecC-CCCeEEEEEecCCCEE
Confidence 8999999999665 4444 4579999999999998765422 345789999999 667776655 68999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
+|||..+....... .+|.+.|++++|+|||++|+||+.|++|+|||+....+
T Consensus 347 ~iwd~~~~~~v~~l--~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 347 VIWKYPTMAKVAEL--KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp EEEETTTCCEEEEE--CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred EEEECCCCcEEEEE--cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 99999887665554 78999999999999999999999999999999987653
No 61
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.1e-32 Score=294.94 Aligned_cols=304 Identities=18% Similarity=0.190 Sum_probs=237.8
Q ss_pred ccccceeeeeccCcceeecC-CCCeeEEeeCCCeEEEEECCCCccccccccc------ceeeecccccEEEEEEec-CCC
Q 004410 226 KKLGAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYT------GQEFLAHEGSILTMKFSL-DGQ 297 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~------~~~l~~H~~~V~~l~fsp-dg~ 297 (755)
+....+.+|.+.+.+++|+| ++++||+|+.||.|+||++............ .....+|.+.|.+++|+| +++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 33445667888999999999 9999999999999999998865432211000 011136999999999999 788
Q ss_pred EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceecc
Q 004410 298 YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (755)
Q Consensus 298 ~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (755)
+|++++.||.|++||+.+++....+
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~------------------------------------------------------- 138 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVF------------------------------------------------------- 138 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEE-------------------------------------------------------
T ss_pred EEEEEeCCCeEEEeeCCCCccceec-------------------------------------------------------
Confidence 9999999999999999877643221
Q ss_pred CccceEecCCCCCEEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCC-EEEEEeCCC
Q 004410 378 EKPLHEFQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN-YFISGSIDG 451 (755)
Q Consensus 378 ~~~~~~~~gh~~~V~~l~~s~~---~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~-~l~sgs~Dg 451 (755)
.+...+.++.|++. + ++++++.|+.|++||+.+++++..+. |...|++++|+| ++. +|++|+.||
T Consensus 139 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg 209 (408)
T 4a11_B 139 --------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADS 209 (408)
T ss_dssp --------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTS
T ss_pred --------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCC
Confidence 25567888888874 3 89999999999999999999888885 999999999999 666 699999999
Q ss_pred cEEEEEcCCCeEE--Ee---------------ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 452 KVRIWEVRRCQVV--DY---------------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 452 ~V~iwdl~~~~~~--~~---------------~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
.|++||+++.... .+ ..|...|++++|+|++++|++++.||.|++||+.+++.......
T Consensus 210 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---- 285 (408)
T 4a11_B 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG---- 285 (408)
T ss_dssp CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC----
T ss_pred cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc----
Confidence 9999999876411 22 46778899999999999999999999999999998876432211
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
...........+.+.......+++++.++.|++||..+....... ..|...|++++|+|++++|++++.||.|++||+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 286 KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML--KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE--CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee--ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence 111111122223333335677888889999999999886665554 678999999999999999999999999999999
Q ss_pred CCCCc
Q 004410 595 SNQDK 599 (755)
Q Consensus 595 ~~~~~ 599 (755)
.+++.
T Consensus 364 ~~~~~ 368 (408)
T 4a11_B 364 SLYEP 368 (408)
T ss_dssp CC---
T ss_pred CCCCc
Confidence 98873
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-33 Score=315.54 Aligned_cols=287 Identities=13% Similarity=0.084 Sum_probs=212.4
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC------CCEEEEEcCCCcEEEEEccCCeeee
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------GQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd------g~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
++.+++++.|++|+||++....... ...+.+.+|.+.|++|+|+|+ +.+||+++.||+|+|||+.++....
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~~---~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLHC---VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ---------CEEEEEEEEETTTCCE---EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred hhhhccCCCCceEEEEEccCCCCCc---eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 3344456678999999976543211 112346778899999999997 5799999999999999997653210
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
... .....+...+.+|...|.+++|++++
T Consensus 250 ~~~---------------------------------------------------~~~~~p~~~l~~h~~~v~sv~~s~~~ 278 (524)
T 2j04_B 250 HVF---------------------------------------------------KMCEKPSLTLSLADSLITTFDFLSPT 278 (524)
T ss_dssp SEE---------------------------------------------------ECCCSCSEEECCTTTCEEEEEESSSS
T ss_pred ccc---------------------------------------------------eeecCceEEEEcCCCCEEEEEecCCC
Confidence 000 00123455678999999999999878
Q ss_pred eEEEEeCCCcEEEEeCCCCe-EEEEE-ecCCcEEEE--EEeeCCC-CEEEEEeCCCcEEEEEcCCCeEE-EeccCC--cc
Q 004410 401 FLLSSSADKTVRLWQVGIDR-CLRVF-SHNNYVTSV--AFNPVDD-NYFISGSIDGKVRIWEVRRCQVV-DYTDIR--EI 472 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~-~~~~~-~h~~~V~~i--~fsp~d~-~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~--~~ 472 (755)
.|++|+.||+|++||++++. +...+ .|...|++| .|+| ++ .+|++|+.|++|+|||+++++.. .+..|. ..
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~ 357 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN 357 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence 99999999999999998763 34444 599999999 4566 76 89999999999999999986643 233333 24
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
|.+++|+|+++.|++++.|++|++||++++..... + ..|...|++++|+| ++.+|++|+.|++|++||...
T Consensus 358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~----l----~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP----L----VSRETTITAIGVSR-LHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE----E----EECSSCEEEEECCS-SCCBCEEEETTTEEECCBSCS
T ss_pred ccceEeCCCcCeEEEeCCCCcEEEEECccccccee----e----ecCCCceEEEEeCC-CCCeEEEEECCCEEEEEechH
Confidence 78999999999999999999999999998765432 1 23678999999999 889999999999999998421
Q ss_pred c-----e-------------------------------------eeEEEeeeccCCceEEEEEecCCC---EEEEEeCCC
Q 004410 553 V-----V-------------------------------------GKFKASAFRVAGSQMFATFTSDGK---HVVSPSEDS 587 (755)
Q Consensus 553 ~-----~-------------------------------------~~~~~~~~~~~~~v~~l~fspdg~---~L~sgs~Dg 587 (755)
. . ........+|...|.+++|+|++. .|++|+.||
T Consensus 429 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g 508 (524)
T 2j04_B 429 RLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG 508 (524)
T ss_dssp STTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTS
T ss_pred hhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCc
Confidence 0 0 000111234677899999999964 999999999
Q ss_pred cEEEEEcCCC
Q 004410 588 NIYIWNYSNQ 597 (755)
Q Consensus 588 ~I~iWd~~~~ 597 (755)
.|+||++...
T Consensus 509 ~vrlw~l~~~ 518 (524)
T 2j04_B 509 LLTLEYLSLE 518 (524)
T ss_dssp EEEEEECSCC
T ss_pred eEEEEEcccc
Confidence 9999998754
No 63
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.9e-32 Score=285.08 Aligned_cols=253 Identities=17% Similarity=0.242 Sum_probs=205.6
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCc
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGT 307 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~ 307 (755)
.+.+|.+.|.+++|+|+|++||+|+.|++|+||++..... ...+++.+|.+.|++++|+| ++++||||+.|++
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 4567888899999999999999999999999999864321 23457889999999999986 4899999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|+|||+.+++. ..+..+.+|
T Consensus 79 v~iWd~~~~~~------------------------------------------------------------~~~~~~~~h 98 (297)
T 2pm7_B 79 VMIWKEENGRW------------------------------------------------------------SQIAVHAVH 98 (297)
T ss_dssp EEEEEBSSSCB------------------------------------------------------------CCCEEECCC
T ss_pred EEEEEcCCCce------------------------------------------------------------EEEEEeecC
Confidence 99999876531 113446679
Q ss_pred CCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCe---EEEEEecCCcEEEEEEeeC------------CCCEEEEEeC
Q 004410 388 SSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDR---CLRVFSHNNYVTSVAFNPV------------DDNYFISGSI 449 (755)
Q Consensus 388 ~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~---~~~~~~h~~~V~~i~fsp~------------d~~~l~sgs~ 449 (755)
...|.+++|+|+ + +|++++.|++|++||+.++. ......|...|.+++|+|. ++++|++|+.
T Consensus 99 ~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~ 178 (297)
T 2pm7_B 99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEET
T ss_pred CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC
Confidence 999999999997 6 89999999999999998763 2223359999999999993 1579999999
Q ss_pred CCcEEEEEcCCCe----EE-EeccCCcceEEEEEccCC---CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCC
Q 004410 450 DGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCPDG---KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 450 Dg~V~iwdl~~~~----~~-~~~~~~~~V~~v~~spdg---~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~ 521 (755)
|++|+|||+++++ .. .+..|...|.+++|+|++ .+|++++.|++|++||+.+........ .+ ....+..
T Consensus 179 D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~-~~--~~~~~~~ 255 (297)
T 2pm7_B 179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT-LL--KEEKFPD 255 (297)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE-ES--SSSCCSS
T ss_pred CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcccee-ee--ecccCCC
Confidence 9999999998754 33 577899999999999985 899999999999999998743111000 01 1123567
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 522 RITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
.|.+++|+| ++.+|++++.|+.|+||+..
T Consensus 256 ~v~~~~~s~-~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 256 VLWRASWSL-SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred cEEEEEECC-CCCEEEEEcCCCcEEEEEEC
Confidence 899999999 89999999999999999865
No 64
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.3e-31 Score=278.03 Aligned_cols=278 Identities=19% Similarity=0.297 Sum_probs=224.1
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
.+.++||+++ +||+|. |++|+|||..++... . ...+.+|...|++++|+|++++||+|+.||+|+||++.+++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~-~----~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL-Q----LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE-E----EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE-E----EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence 3569999986 777764 899999998765421 1 11345788999999999999999999999999999998876
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
.+ ..+.+|...+.++.+.
T Consensus 101 ~~--------------------------------------------------------------~~~~~h~~~~~~~~~~ 118 (318)
T 4ggc_A 101 RL--------------------------------------------------------------RNMTSHSARVGSLSWN 118 (318)
T ss_dssp EE--------------------------------------------------------------EEEECCSSCEEEEEEE
T ss_pred eE--------------------------------------------------------------EEecCccceEEEeecC
Confidence 43 3456788888776665
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCe-EEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE-----EEeccCC
Q 004410 398 KNGFLLSSSADKTVRLWQVGIDR-CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-----VDYTDIR 470 (755)
Q Consensus 398 ~~~~L~s~s~Dg~V~iWdl~s~~-~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~-----~~~~~~~ 470 (755)
+. .+++++.++.+++|+..... .+..+ .|...+.++.+.+ ++++|++++.|+.|++||+++++. .....+.
T Consensus 119 ~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 196 (318)
T 4ggc_A 119 SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196 (318)
T ss_dssp TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC
T ss_pred CC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccC
Confidence 32 89999999999999987654 33443 5999999999999 999999999999999999987642 3456677
Q ss_pred cceEEEEEccCCCeE---EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE--CCCcE
Q 004410 471 EIVSAVCYCPDGKGG---IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS--ADSLV 545 (755)
Q Consensus 471 ~~V~~v~~spdg~~l---a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s--~Dg~I 545 (755)
..|.+++++|++..+ ++++.++.|++||......... ..+...+..+.|+| ++..+++++ .|+.|
T Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~~~~~sg~~d~~i 266 (318)
T 4ggc_A 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---------VDAHSQVCSILWSP-HYKELISGHGFAQNQL 266 (318)
T ss_dssp SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE---------EECSSCEEEEEEET-TTTEEEEEECTTTCCE
T ss_pred CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc---------ccceeeeeeeeecc-cccceEEEEEcCCCEE
Confidence 889999999977644 3566789999999998776542 22456799999999 666666554 79999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|||..+....... .+|.+.|++++|+|||++|+||+.||+|+|||+....
T Consensus 267 ~iwd~~~~~~~~~l--~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 267 VIWKYPTMAKVAEL--KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEETTTCCEEEEE--CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEECCCCcEEEEE--cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99999887665554 7799999999999999999999999999999997654
No 65
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-31 Score=322.69 Aligned_cols=332 Identities=12% Similarity=0.127 Sum_probs=235.4
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
...|.+++|+| |++|++++.|++|+|||+..... ...+. |.+.|++++|+|++++|++|+.||.|++||+.
T Consensus 58 ~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~-------~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 58 RSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV-------LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp CCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE-------EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE-------EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 45678899999 88999999999999999876432 22333 67899999999999999999999999999999
Q ss_pred CCeee-----------eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 315 EHERL-----------DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 315 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
++... ..+..+...+.++.|.+.+.. ..+.+..++.+ +|+.... +++..
T Consensus 129 ~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~---------------~l~~g~~dg~v-lWd~~~~----~~~~~ 188 (902)
T 2oaj_A 129 RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG---------------TVLISYEYVTL-TYSLVEN----EIKQS 188 (902)
T ss_dssp TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE---------------EEEEECSSCEE-EEETTTT----EEEEE
T ss_pred CCccccceeccccccccccccCCCCeEEEEEccCCCC---------------EEEEEeCCCcE-EEECCCC----ceEEE
Confidence 88753 112233445556666553211 23344556666 7765432 22333
Q ss_pred ecC------------------CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEE--Ee----c-----------
Q 004410 384 FQG------------------HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV--FS----H----------- 427 (755)
Q Consensus 384 ~~g------------------h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~--~~----h----------- 427 (755)
+.+ |...|.+++|+|++ +|++++.|++|++||+.+++++.. +. |
T Consensus 189 ~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~ 268 (902)
T 2oaj_A 189 FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSS 268 (902)
T ss_dssp ECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCS
T ss_pred EecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCc
Confidence 333 35779999999998 899999999999999877665432 10 1
Q ss_pred --CCcEEEEEEe--------------------------------------------------------------------
Q 004410 428 --NNYVTSVAFN-------------------------------------------------------------------- 437 (755)
Q Consensus 428 --~~~V~~i~fs-------------------------------------------------------------------- 437 (755)
...|++++|+
T Consensus 269 ~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 348 (902)
T 2oaj_A 269 TNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNI 348 (902)
T ss_dssp SCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEE
T ss_pred cccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEE
Confidence 1233333332
Q ss_pred --------------------------------------------------------------------------------
Q 004410 438 -------------------------------------------------------------------------------- 437 (755)
Q Consensus 438 -------------------------------------------------------------------------------- 437 (755)
T Consensus 349 ~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~ 428 (902)
T 2oaj_A 349 LPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKD 428 (902)
T ss_dssp EECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCC
T ss_pred EECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCC
Confidence
Q ss_pred ----------------eCCCCEEEEEeCCCcEEEEEcCCCeE-----EE--ec-----cCCcceEEEEEccCCCeEEEEe
Q 004410 438 ----------------PVDDNYFISGSIDGKVRIWEVRRCQV-----VD--YT-----DIREIVSAVCYCPDGKGGIVGT 489 (755)
Q Consensus 438 ----------------p~d~~~l~sgs~Dg~V~iwdl~~~~~-----~~--~~-----~~~~~V~~v~~spdg~~la~gs 489 (755)
| ++++|++|+.|++|++||+.++.. .. +. .|...|++++|+|||++||+|+
T Consensus 429 ~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs 507 (902)
T 2oaj_A 429 YLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI 507 (902)
T ss_dssp CSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE
T ss_pred CcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe
Confidence 2 344566666777777777665431 11 11 5667899999999999999999
Q ss_pred CCCcEEEEECCCCeEeee------e-------------------------------eEEecccccCCCCCeEEEEEcCCC
Q 004410 490 MTGNCRFYDIKDNQLYQQ------N-------------------------------QICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 490 ~dg~I~iwD~~~~~~~~~------~-------------------------------~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
.||+|+|||+.+++.... . ..........|...|++++|+| +
T Consensus 508 ~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-d 586 (902)
T 2oaj_A 508 ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-I 586 (902)
T ss_dssp TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-T
T ss_pred cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-C
Confidence 999999999987632100 0 0000112334788999999999 7
Q ss_pred CCEEEEEECCCcEEEEECCcceeeEEEee---e-ccCCceEEEEEe-----cCC---CEEEEEeCCCcEEEEEc---CCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKFKASA---F-RVAGSQMFATFT-----SDG---KHVVSPSEDSNIYIWNY---SNQ 597 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~---~-~~~~~v~~l~fs-----pdg---~~L~sgs~Dg~I~iWd~---~~~ 597 (755)
+ +|++|+.|++|+|||.......+.... . +|...|++++|+ ||| ++|++|+.|++|++||+ .+|
T Consensus 587 G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g 665 (902)
T 2oaj_A 587 G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGG 665 (902)
T ss_dssp S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGG
T ss_pred c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCC
Confidence 8 999999999999999877554433221 1 688889999999 886 89999999999999999 454
Q ss_pred C
Q 004410 598 D 598 (755)
Q Consensus 598 ~ 598 (755)
+
T Consensus 666 ~ 666 (902)
T 2oaj_A 666 K 666 (902)
T ss_dssp C
T ss_pred c
Confidence 4
No 66
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-31 Score=283.73 Aligned_cols=253 Identities=18% Similarity=0.213 Sum_probs=199.2
Q ss_pred ccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 275 ~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
...+.+.+|.+.|++++|+|+ +||+|+.|++|+||++..+...
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~----------------------------------- 47 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT----------------------------------- 47 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-----------------------------------
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-----------------------------------
Confidence 345678899999999999988 9999999999999998654210
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEe-c-CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC-------CeEEEE
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-Q-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-------DRCLRV 424 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-------~~~~~~ 424 (755)
.+..+ . +|...|.+++|+|++ +|++++.|++|+|||+.. .+++..
T Consensus 48 -------------------------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~ 102 (330)
T 2hes_X 48 -------------------------LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI 102 (330)
T ss_dssp -------------------------EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEE
T ss_pred -------------------------EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEE
Confidence 01222 2 399999999999999 999999999999999853 345556
Q ss_pred E-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC----eEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEE
Q 004410 425 F-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (755)
Q Consensus 425 ~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~----~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD 498 (755)
+ .|...|++++|+| ++++|++|+.|++|++||++.. +++ .+..|...|.+++|+|++.+|++|+.|++|++||
T Consensus 103 ~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~ 181 (330)
T 2hes_X 103 IEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181 (330)
T ss_dssp EC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred EcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 6 4999999999999 9999999999999999999532 333 5678899999999999999999999999999999
Q ss_pred CCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC-CCEEEEEECCCcEEEEECCcce----e--eEEEeee-ccCCceEE
Q 004410 499 IKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD-PSKVIVTSADSLVRVLCGENVV----G--KFKASAF-RVAGSQMF 570 (755)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d-~~~l~s~s~Dg~I~iwd~~~~~----~--~~~~~~~-~~~~~v~~ 570 (755)
+.++..... .....|...|.+++|+|+. +..|++++.|++|++||..... . ....... .|...|.+
T Consensus 182 ~~~~~~~~~------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 255 (330)
T 2hes_X 182 DYDDDWECV------AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYN 255 (330)
T ss_dssp EETTEEEEE------EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEE
T ss_pred CCCCCeeEE------EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEE
Confidence 887632111 1133567899999999932 5689999999999999976431 0 1112122 38889999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 571 ATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 571 l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
++|++++ +|++++.||.|+||++.++
T Consensus 256 v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 256 VAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred EEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 9999665 8999999999999997644
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-32 Score=293.17 Aligned_cols=252 Identities=17% Similarity=0.272 Sum_probs=199.6
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++...
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~--------------------------------------- 48 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI--------------------------------------- 48 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---------------------------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---------------------------------------
Confidence 46789999999999999999999999999999998765311
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCcEE
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNYVT 432 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~V~ 432 (755)
.+..+.+|...|.+++|+++ + +|++++.|++|++||+.+++ .+..+ .|...|+
T Consensus 49 ---------------------~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~ 107 (316)
T 3bg1_A 49 ---------------------LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN 107 (316)
T ss_dssp ---------------------EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC
T ss_pred ---------------------EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE
Confidence 13457789999999999863 5 99999999999999998874 44555 4999999
Q ss_pred EEEEeeCC--CCEEEEEeCCCcEEEEEcCCCeE----EEeccCCcceEEEEEccC-----------------CCeEEEEe
Q 004410 433 SVAFNPVD--DNYFISGSIDGKVRIWEVRRCQV----VDYTDIREIVSAVCYCPD-----------------GKGGIVGT 489 (755)
Q Consensus 433 ~i~fsp~d--~~~l~sgs~Dg~V~iwdl~~~~~----~~~~~~~~~V~~v~~spd-----------------g~~la~gs 489 (755)
+++|+| + +.+|++|+.|++|++||++.... .....|...|.+++|+|+ +++|++|+
T Consensus 108 ~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 186 (316)
T 3bg1_A 108 SVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186 (316)
T ss_dssp EEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB
T ss_pred EEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEec
Confidence 999999 5 78999999999999999987632 134567888999999997 47899999
Q ss_pred CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC---CCEEEEEECCCcEEEEECCccee-e-EEEeeecc
Q 004410 490 MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD---PSKVIVTSADSLVRVLCGENVVG-K-FKASAFRV 564 (755)
Q Consensus 490 ~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d---~~~l~s~s~Dg~I~iwd~~~~~~-~-~~~~~~~~ 564 (755)
.|+.|++||++....... ......|...|.+++|+|+. +.+|++++.|++|+||+..+... . .......|
T Consensus 187 ~D~~v~lWd~~~~~~~~~-----~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 261 (316)
T 3bg1_A 187 CDNLIKLWKEEEDGQWKE-----EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF 261 (316)
T ss_dssp TTSBCCEEEECTTSCEEE-----EECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC
T ss_pred CCCeEEEEEeCCCCccce-----eeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC
Confidence 999999999975421110 01134577899999999943 37999999999999999876211 0 00111457
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 565 AGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 565 ~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
...|.+++|+|+|++|++++.|+.|+||+...
T Consensus 262 ~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 262 NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 88999999999999999999999999999863
No 68
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-31 Score=296.88 Aligned_cols=329 Identities=15% Similarity=0.266 Sum_probs=231.2
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcc----cccccccceeeeccc------------ccEEEEEEecCC--
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR----ELSSLYTGQEFLAHE------------GSILTMKFSLDG-- 296 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~----~~~~~~~~~~l~~H~------------~~V~~l~fspdg-- 296 (755)
.+.|.+++|+|+|++||+|+.||.|+||++..... ....+.....+.+|. +.|.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 46788899999999999999999999999875442 111222456788998 889999999998
Q ss_pred CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec
Q 004410 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (755)
Q Consensus 297 ~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (755)
.+|++++.|+.|++|++.++...............+. .......+. ... ..+..+..
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~--------~~~--------------~~~~~~~~ 164 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYR-DPTTVTTLR--------VPV--------------FRPMDLMV 164 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC---------CCCCCSCC--------CCE--------------EEEEEEEE
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCcccccc-CcccccceE--------ecc--------------ccchheee
Confidence 8999999999999999987654321110000000000 000000000 000 00000001
Q ss_pred cCccceEe-cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCC-CCeEEEEE--------ecCCcEEEEEEeeCCC-CEE
Q 004410 377 LEKPLHEF-QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG-IDRCLRVF--------SHNNYVTSVAFNPVDD-NYF 444 (755)
Q Consensus 377 ~~~~~~~~-~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~-s~~~~~~~--------~h~~~V~~i~fsp~d~-~~l 444 (755)
...+...+ .+|...|.+++|+|++ +|+++ .|++|++||+. .++++..+ .|...|++++|+| ++ ++|
T Consensus 165 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l 242 (447)
T 3dw8_B 165 EASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTF 242 (447)
T ss_dssp EEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEE
T ss_pred eccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEE
Confidence 11222333 6899999999999999 88887 89999999999 45565543 4899999999999 76 999
Q ss_pred EEEeCCCcEEEEEcCCCeE-----EEeccCCc------------ceEEEEEccCCCeEEEEeCCCcEEEEECCC-CeEee
Q 004410 445 ISGSIDGKVRIWEVRRCQV-----VDYTDIRE------------IVSAVCYCPDGKGGIVGTMTGNCRFYDIKD-NQLYQ 506 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~~~-----~~~~~~~~------------~V~~v~~spdg~~la~gs~dg~I~iwD~~~-~~~~~ 506 (755)
++|+.||.|++||+++++. ..+..+.. .|.+++|+|+|++|++++. |.|++||++. ++.+.
T Consensus 243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence 9999999999999998774 45555554 8999999999999999999 9999999997 66554
Q ss_pred eeeEEecccccCCC--------C---CeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe---------------
Q 004410 507 QNQICLQGKKKLPG--------K---RITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS--------------- 560 (755)
Q Consensus 507 ~~~~~~~~~~~~~~--------~---~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~--------------- 560 (755)
.+.. +..... . .+..++|+| ++.+|++++.|+.|+|||..+........
T Consensus 322 ~~~~----~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (447)
T 3dw8_B 322 TYQV----HEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRK 396 (447)
T ss_dssp CEES----CGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCC
T ss_pred eeec----cccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCcc
Confidence 3221 111000 1 134599999 89999999999999999988754322110
Q ss_pred ---------------eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 561 ---------------AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 561 ---------------~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.......|..++|+|++.+|++++.++ +++|.-+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 397 VCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 112345788999999999999998875 8888643
No 69
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.3e-32 Score=297.58 Aligned_cols=252 Identities=17% Similarity=0.315 Sum_probs=211.0
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+++.+|.+.|++++|+|++++||||+.||+|+|||+.+++.
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~------------------------------------- 100 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK------------------------------------- 100 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-------------------------------------
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------------------------------------
Confidence 4467899999999999999999999999999999999977653
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe-------EEEEE-e
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-------CLRVF-S 426 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~-------~~~~~-~ 426 (755)
+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+.. ....+ .
T Consensus 101 -------------------------~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~g 155 (380)
T 3iz6_a 101 -------------------------THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTG 155 (380)
T ss_dssp -------------------------EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCC
T ss_pred -------------------------ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccC
Confidence 23456788899999999999 99999999999999987532 12223 5
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe------ccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEEC
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY------TDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDI 499 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~------~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~ 499 (755)
|...|.++.|.|.++..|++|+.|++|++||+.+++.+.. ..|...|.+++|++ ++.+|++|+.||.|++||+
T Consensus 156 h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~ 235 (380)
T 3iz6_a 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235 (380)
T ss_dssp CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence 8999999999995577899999999999999999887743 46788899999987 8899999999999999999
Q ss_pred CCC-eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeee-----ccCCceEEEEE
Q 004410 500 KDN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF-----RVAGSQMFATF 573 (755)
Q Consensus 500 ~~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-----~~~~~v~~l~f 573 (755)
+.. ..+.. ...|...|++++|+| ++.+|++++.|++|++||..+.......... .+...|++++|
T Consensus 236 ~~~~~~~~~--------~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 236 RITSRAVRT--------YHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp TTTCCCCEE--------ECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred CCCCcceEE--------ECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence 843 33221 234778999999999 8999999999999999999876554433111 12234889999
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 574 TSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 574 spdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|+|++|++|+.||.|+|||+.+++
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEETTTCC
T ss_pred CCCCCEEEEEECCCCEEEEECCCCc
Confidence 9999999999999999999998776
No 70
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.5e-32 Score=289.54 Aligned_cols=284 Identities=10% Similarity=0.072 Sum_probs=235.2
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCC-EEEEEcCCCcEE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVR 309 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~-~LaSgs~Dg~I~ 309 (755)
..+|.+.+.+++|+|++++|++|+.|+.|+||++....... ....+.+|...|.+++|+|+++ +|++|+.||.|+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc----cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 34677889999999999999999999999999976543111 1234568999999999999999 999999999999
Q ss_pred EEEc-cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC--
Q 004410 310 VWKV-IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-- 386 (755)
Q Consensus 310 vWdv-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-- 386 (755)
+|++ .+++. ..+.+
T Consensus 83 ~wd~~~~~~~---------------------------------------------------------------~~~~~~~ 99 (342)
T 1yfq_A 83 KVDLIGSPSF---------------------------------------------------------------QALTNNE 99 (342)
T ss_dssp EECSSSSSSE---------------------------------------------------------------EECBSCC
T ss_pred EEEeccCCce---------------------------------------------------------------EeccccC
Confidence 9998 66531 23456
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC---------CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---------DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s---------~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
|...|.+++|+| + .|++++.|+.|++||+.+ ++++..+.|...|.+++|+| ++ |++++.|+.|++|
T Consensus 100 ~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~ 175 (342)
T 1yfq_A 100 ANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS-SR--LIVGMNNSQVQWF 175 (342)
T ss_dssp CCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-SE--EEEEESTTEEEEE
T ss_pred CCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC-Cc--EEEEeCCCeEEEE
Confidence 999999999999 6 999999999999999987 77777777999999999998 54 9999999999999
Q ss_pred EcCC-CeE---EEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCC------eEeeeeeEEeccccc-----CCC
Q 004410 457 EVRR-CQV---VDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDN------QLYQQNQICLQGKKK-----LPG 520 (755)
Q Consensus 457 dl~~-~~~---~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~------~~~~~~~~~~~~~~~-----~~~ 520 (755)
|+++ ... .....+...|.+++|+| ++++|++++.+|.|++|++... +.... +..+.. .+.
T Consensus 176 d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 251 (342)
T 1yfq_A 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA----FRCHRLNLKDTNLA 251 (342)
T ss_dssp ESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE----EECCCCCTTCCSSC
T ss_pred ECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee----eecccccccccccc
Confidence 9998 432 24556788999999999 9999999999999999999876 33322 222111 234
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeecc-CCceEEEEEecCCCEEEEEeCCCc-EEEEEc
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRV-AGSQMFATFTSDGKHVVSPSEDSN-IYIWNY 594 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~v~~l~fspdg~~L~sgs~Dg~-I~iWd~ 594 (755)
..|++++|+| ++.+|++++.||.|++||..+....... ..| ...|.+++ |++++|++++.||. .+.|..
T Consensus 252 ~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 252 YPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNF--AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp CCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEEC--CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred eeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhh--hcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 5899999999 8899999999999999999876655443 566 88999999 99999999999998 555553
No 71
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-31 Score=289.34 Aligned_cols=257 Identities=19% Similarity=0.270 Sum_probs=214.4
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.+.+.+|.+.|++++|+|++++||+|+.||.|+||++.....
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------------------- 45 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------------------------- 45 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE--------------------------------------
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc--------------------------------------
Confidence 356889999999999999999999999999999999864321
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCc
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNY 430 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~ 430 (755)
+.+..+.+|...|.+++|+++ + +|++++.|+.|++||+.+++ .+..+ .|...
T Consensus 46 ----------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 103 (379)
T 3jrp_A 46 ----------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS 103 (379)
T ss_dssp ----------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred ----------------------eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc
Confidence 124557789999999999876 6 99999999999999999987 55555 38999
Q ss_pred EEEEEEeeCC--CCEEEEEeCCCcEEEEEcCCC---eEEEeccCCcceEEEEEcc-------------CCCeEEEEeCCC
Q 004410 431 VTSVAFNPVD--DNYFISGSIDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCP-------------DGKGGIVGTMTG 492 (755)
Q Consensus 431 V~~i~fsp~d--~~~l~sgs~Dg~V~iwdl~~~---~~~~~~~~~~~V~~v~~sp-------------dg~~la~gs~dg 492 (755)
|++++|+| + +++|++++.|+.|++||++.. .......|...|.+++|+| ++.+|++|+.||
T Consensus 104 v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 182 (379)
T 3jrp_A 104 VNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 182 (379)
T ss_dssp EEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTS
T ss_pred eEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC
Confidence 99999999 7 899999999999999999886 3445678899999999999 699999999999
Q ss_pred cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC--CCEEEEEECCCcEEEEECCcceee---EEEeeeccCCc
Q 004410 493 NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD--PSKVIVTSADSLVRVLCGENVVGK---FKASAFRVAGS 567 (755)
Q Consensus 493 ~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d--~~~l~s~s~Dg~I~iwd~~~~~~~---~~~~~~~~~~~ 567 (755)
.|++||++++........ ....|...|++++|+|+. +.+|++++.|+.|++||....... .......|...
T Consensus 183 ~i~i~d~~~~~~~~~~~~----~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (379)
T 3jrp_A 183 LVKIWKYNSDAQTYVLES----TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 258 (379)
T ss_dssp CEEEEEEETTTTEEEEEE----EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC
T ss_pred eEEEEEecCCCcceeeEE----EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc
Confidence 999999987654322222 233467899999999932 899999999999999998875322 22222347889
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 568 QMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 568 v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|++++|+|+|++|++++.||.|++|++..+.
T Consensus 259 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 259 LWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 9999999999999999999999999998653
No 72
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-32 Score=300.55 Aligned_cols=278 Identities=15% Similarity=0.188 Sum_probs=219.3
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceee-ecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
..|+|++..++++. .|+... ...+.+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+.+.
T Consensus 33 ~~f~~~~~~~~~~~------~w~~~g--------~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~ 98 (437)
T 3gre_A 33 KEFGPIQEIVRSPN------MGNLRG--------KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV 98 (437)
T ss_dssp GGGCCCCCCCCCCC------GGGCCC--------CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT
T ss_pred hhcCCccccccccc------cccccc--------eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECccccc
Confidence 56899999888765 365332 223456 78999999999999 999999999999999999865210
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
... ......+ +|...|.+++|+|
T Consensus 99 ~~~--------------------------------------------------------~~~~~~~-~h~~~v~~~~~~~ 121 (437)
T 3gre_A 99 GEV--------------------------------------------------------YSSSLTY-DCSSTVTQITMIP 121 (437)
T ss_dssp TCC--------------------------------------------------------CSCSEEE-ECSSCEEEEEECT
T ss_pred Ccc--------------------------------------------------------cceeeec-cCCCCEEEEEEeC
Confidence 000 0011222 4899999999999
Q ss_pred CC-eEEEEeCCCcEEEEeCC---CCeEEEEEe-------------cCCcEEEEE--EeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 399 NG-FLLSSSADKTVRLWQVG---IDRCLRVFS-------------HNNYVTSVA--FNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 399 ~~-~L~s~s~Dg~V~iWdl~---s~~~~~~~~-------------h~~~V~~i~--fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
++ +|++++.|++|++||+. +++++..+. +...+.++. ++| ++.+|++|+.|+.|++||++
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 200 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIR 200 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Confidence 88 99999999999999994 554444332 566777777 456 78999999999999999999
Q ss_pred CCeEE-Eecc--CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC---CC
Q 004410 460 RCQVV-DYTD--IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS---DP 533 (755)
Q Consensus 460 ~~~~~-~~~~--~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~---d~ 533 (755)
+++.+ .+.. |...|++++|+|++++|++|+.||.|++||+++++.+..+. ..+...|++++|+|. ++
T Consensus 201 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~s~~~ 273 (437)
T 3gre_A 201 TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS-------FGDHAPITHVEVCQFYGKNS 273 (437)
T ss_dssp TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB-------CTTCEEEEEEEECTTTCTTE
T ss_pred CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe-------cCCCCceEEEEeccccCCCc
Confidence 98877 3444 78899999999999999999999999999999988765422 134568999977762 56
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEee----------------------e--ccCCceEEEEEecCCCEEEEEeCCCcE
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASA----------------------F--RVAGSQMFATFTSDGKHVVSPSEDSNI 589 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----------------------~--~~~~~v~~l~fspdg~~L~sgs~Dg~I 589 (755)
.+|++++.|+.|+|||..+......... . .|...|++++|+ ++++|++|+.|+.|
T Consensus 274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i 352 (437)
T 3gre_A 274 VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSI 352 (437)
T ss_dssp EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEE
T ss_pred cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeE
Confidence 7999999999999999987654433321 1 166779999999 88999999999999
Q ss_pred EEEEcCCCC
Q 004410 590 YIWNYSNQD 598 (755)
Q Consensus 590 ~iWd~~~~~ 598 (755)
++||+.+++
T Consensus 353 ~~wd~~~~~ 361 (437)
T 3gre_A 353 VMFSLNELS 361 (437)
T ss_dssp EEEETTCGG
T ss_pred EEEECCCcc
Confidence 999999876
No 73
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-31 Score=318.50 Aligned_cols=292 Identities=19% Similarity=0.262 Sum_probs=248.4
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
..+.+.+|.+.+.+++|+|++++||+|+.+|.|+||++..+. ..+.+.+|.+.|.+++|+|++++||+++.||
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 77 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCC
Confidence 345678899999999999999999999999999999976543 3356788999999999999999999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|+|||+.+++. +..+.+
T Consensus 78 ~i~vw~~~~~~~--------------------------------------------------------------~~~~~~ 95 (814)
T 3mkq_A 78 RIRVFNYNTGEK--------------------------------------------------------------VVDFEA 95 (814)
T ss_dssp EEEEEETTTCCE--------------------------------------------------------------EEEEEC
T ss_pred eEEEEECCCCcE--------------------------------------------------------------EEEEec
Confidence 999999987653 344567
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-eEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~-~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
|...|.+++|+|++ +|++++.|++|++||+.++ .+...+ .|...|.+++|+|.++++|++++.||.|++||+.++..
T Consensus 96 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 175 (814)
T 3mkq_A 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (814)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC
T ss_pred CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 99999999999999 9999999999999999987 666666 48999999999996678999999999999999987654
Q ss_pred E-Eec-cCCcceEEEEEcc--CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 464 V-DYT-DIREIVSAVCYCP--DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 464 ~-~~~-~~~~~V~~v~~sp--dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
. ... .+...+.+++|+| ++.+|++++.||.|++||+.+++..... ..|...|++++|+| ++.+++++
T Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--------~~~~~~v~~~~~~~-~~~~l~~~ 246 (814)
T 3mkq_A 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL--------EGHMSNVSFAVFHP-TLPIIISG 246 (814)
T ss_dssp SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEECS-SSSEEEEE
T ss_pred eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE--------cCCCCCEEEEEEcC-CCCEEEEE
Confidence 4 333 3448899999999 9999999999999999999998876532 23567899999999 88999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCE-EEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKH-VVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~-L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.||.|++||..+....... ..+...+.+++|+|+|.. +++++.|+.+.+|++..+.
T Consensus 247 ~~dg~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 247 SEDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp ETTSCEEEEETTTCSEEEEE--CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred eCCCeEEEEECCCCcEEEEe--ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 99999999999876555544 567789999999999974 2445557789999987665
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-32 Score=295.72 Aligned_cols=252 Identities=12% Similarity=0.117 Sum_probs=196.1
Q ss_pred eecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
+..|.+.|++++|+|+|++||+|+.|+.|+||++.++..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------------------------- 45 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------------------------- 45 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----------------------------------------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----------------------------------------
Confidence 445778999999999999999999999999999876521
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe---EEEE-EecCCcEEEE
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR---CLRV-FSHNNYVTSV 434 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~---~~~~-~~h~~~V~~i 434 (755)
+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++ .... ..|...|+++
T Consensus 46 -------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 46 -------------------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp -------------------EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred -------------------EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 1134456899999999999999 99999999999999999877 3333 3699999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEcCCCe----EEEecc-CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee--
Q 004410 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ-- 507 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~~~~~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~-- 507 (755)
+|+| ++++|++++.|+.|++||+++++ ...+.. |...|++++|+|++++|++++.||.|++||+........
T Consensus 107 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 107 RWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 9999 99999999999999999999876 335555 899999999999999999999999999999964331110
Q ss_pred ---------eeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeE--EEeeeccCCceEEEEEecC
Q 004410 508 ---------NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF--KASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 508 ---------~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~--~~~~~~~~~~v~~l~fspd 576 (755)
...... .. .|...|++++|+| ++.+|++++.|+.|++||..+..... ......|...|.+++|+|+
T Consensus 186 ~~~~~~~~~~~~~~~-~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 262 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCA-EY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANE 262 (377)
T ss_dssp SCSSCSCCCEEEEEE-CC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEET
T ss_pred ccccccccchhhhhh-cc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCC
Confidence 000111 12 5778899999999 88999999999999999988765411 2223668889999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 004410 577 GKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 577 g~~L~sgs~Dg~I~iWd~~~ 596 (755)
|++|++++.|+.+ +|+...
T Consensus 263 ~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 263 SAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp TEEEEEESSSSEE-EECCCC
T ss_pred CCEEEEEcCCcEE-EEEeCC
Confidence 9999998766555 777664
No 75
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1e-30 Score=278.64 Aligned_cols=255 Identities=17% Similarity=0.266 Sum_probs=212.3
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+.+.+|.+.|++|+|+|++++||+|+.||.|+||++.++....
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------------- 47 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW------------------------------------- 47 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------------------------------
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------------------------------
Confidence 4567999999999999999999999999999999987653210
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC--CC-eEEEEeCCCcEEEEeCCCC---------eEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK--NG-FLLSSSADKTVRLWQVGID---------RCLRVF 425 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~--~~-~L~s~s~Dg~V~iWdl~s~---------~~~~~~ 425 (755)
+.+..+.+|...|.+++|+| ++ +|++++.|++|++||+.++ +++..+
T Consensus 48 ---------------------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 106 (351)
T 3f3f_A 48 ---------------------ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL 106 (351)
T ss_dssp ---------------------EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred ---------------------eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence 12455678999999999999 46 9999999999999999887 555555
Q ss_pred -ecCCcEEEEEEeeCC--CCEEEEEeCCCcEEEEEcCCCeEEE--------------eccCCcceEEEEEccC---CCeE
Q 004410 426 -SHNNYVTSVAFNPVD--DNYFISGSIDGKVRIWEVRRCQVVD--------------YTDIREIVSAVCYCPD---GKGG 485 (755)
Q Consensus 426 -~h~~~V~~i~fsp~d--~~~l~sgs~Dg~V~iwdl~~~~~~~--------------~~~~~~~V~~v~~spd---g~~l 485 (755)
.|...|.+++|+| + +++|++++.||.|++||+++++.+. ...+...+.+++|+|+ +..|
T Consensus 107 ~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 185 (351)
T 3f3f_A 107 NDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185 (351)
T ss_dssp CCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred cccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence 4899999999999 7 9999999999999999998765331 1256778999999997 9999
Q ss_pred EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC----CEEEEEECCCcEEEEECCcce-------
Q 004410 486 IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP----SKVIVTSADSLVRVLCGENVV------- 554 (755)
Q Consensus 486 a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~----~~l~s~s~Dg~I~iwd~~~~~------- 554 (755)
++++.++.+.+|+...+...... ....|...|++++|+| ++ .+|++++.|+.|++||.....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 258 (351)
T 3f3f_A 186 AVSALEQAIIYQRGKDGKLHVAA------KLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE 258 (351)
T ss_dssp EEEETTEEEEEEECTTSCEEEEE------ECCCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEECC-------
T ss_pred EEecCCCcEEEEccCCCceeeee------ecCCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC
Confidence 99999999988888877653211 1334678999999999 55 799999999999999987531
Q ss_pred -------------------------------------eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 555 -------------------------------------GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 555 -------------------------------------~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
.........|...|++++|+|++++|++++.||.|+||++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp --------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 1233333568899999999999999999999999999999987
Q ss_pred C
Q 004410 598 D 598 (755)
Q Consensus 598 ~ 598 (755)
+
T Consensus 339 ~ 339 (351)
T 3f3f_A 339 N 339 (351)
T ss_dssp S
T ss_pred c
Confidence 5
No 76
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-31 Score=294.58 Aligned_cols=293 Identities=20% Similarity=0.251 Sum_probs=235.7
Q ss_pred CcceeecCCCCeeE-EeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~la-sgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~ 315 (755)
...++++|+...++ +++.+|.|+||++....... .....+.+|.+.|++++|+| ++++||+|+.||.|+||++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 34588888877544 57889999999986544321 22345789999999999999 999999999999999999987
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
+...... ..++..+.+|...|.+++
T Consensus 114 ~~~~~~~-------------------------------------------------------~~~~~~~~~h~~~v~~~~ 138 (402)
T 2aq5_A 114 GGLVLPL-------------------------------------------------------REPVITLEGHTKRVGIVA 138 (402)
T ss_dssp TCCSSCB-------------------------------------------------------CSCSEEEECCSSCEEEEE
T ss_pred CCCcccc-------------------------------------------------------CCceEEecCCCCeEEEEE
Confidence 6432100 134667889999999999
Q ss_pred EcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE--e-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe--cc
Q 004410 396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVF--S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TD 468 (755)
Q Consensus 396 ~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~--~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~--~~ 468 (755)
|+|++ .|++++.|++|++||+.+++++..+ . |...|++++|+| ++++|++++.||.|++||+++++.+.. ..
T Consensus 139 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 217 (402)
T 2aq5_A 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRP 217 (402)
T ss_dssp ECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred ECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccC
Confidence 99996 8999999999999999999999888 3 899999999999 999999999999999999999988743 45
Q ss_pred CCcc-eEEEEEccCCCeEEEE---eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE-EEECCC
Q 004410 469 IREI-VSAVCYCPDGKGGIVG---TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI-VTSADS 543 (755)
Q Consensus 469 ~~~~-V~~v~~spdg~~la~g---s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~-s~s~Dg 543 (755)
|... +.+++|+|++++|++| +.++.|++||++++....... ...+...+..++|+| ++.+|+ +++.|+
T Consensus 218 ~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~s~-~~~~l~~~g~~dg 290 (402)
T 2aq5_A 218 HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ------ELDTSSGVLLPFFDP-DTNIVYLCGKGDS 290 (402)
T ss_dssp SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE------ECCCCSSCEEEEEET-TTTEEEEEETTCS
T ss_pred CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE------eccCCCceeEEEEcC-CCCEEEEEEcCCC
Confidence 6655 8999999999999999 789999999999865421110 112456799999999 777776 455799
Q ss_pred cEEEEECCccee-eEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 544 LVRVLCGENVVG-KFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 544 ~I~iwd~~~~~~-~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.|++||..+... ........+...|.+++|+|++.++++ .|+.+++|++.++.
T Consensus 291 ~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 291 SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp CEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred eEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 999999887553 222222446789999999999998875 56799999998754
No 77
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.1e-31 Score=285.76 Aligned_cols=297 Identities=14% Similarity=0.203 Sum_probs=237.7
Q ss_pred ccccceeeeeccCcceeecCC---CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEE
Q 004410 226 KKLGAMARIIDRHGSATLKPG---DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG 302 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spd---g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSg 302 (755)
+.+..+.+|.+.+.+++|+|+ |++|++|+.||.|+||++...... ....+.+|.+.|.+++|+|++++|+++
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----IPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----EEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----eEEEeccccCCEEEEEECcCCCEEEEE
Confidence 344567788899999999999 599999999999999998753221 224578899999999999999999999
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
+.||.|++||+.+++.+
T Consensus 105 ~~dg~v~iwd~~~~~~~--------------------------------------------------------------- 121 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAI--------------------------------------------------------------- 121 (368)
T ss_dssp ETTSEEEEEETTTTEEE---------------------------------------------------------------
T ss_pred cCCCcEEEEEcCCCCce---------------------------------------------------------------
Confidence 99999999999876532
Q ss_pred EecCCCCCEEEEEE--cCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 383 EFQGHSSEVLDLSW--SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 383 ~~~gh~~~V~~l~~--s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
.+.+|...|.+++| ++++ +|++++.|+.|++||+.+++++..+.....+.++.+.+ ..+++++.++.+++|+++
T Consensus 122 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 122 QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY---PMAVVATAERGLIVYQLE 198 (368)
T ss_dssp EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET---TEEEEEEGGGCEEEEECS
T ss_pred eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC---CeeEEEeCCCcEEEEEec
Confidence 13458899999999 8888 89999999999999999999999998777888887765 588899999999999998
Q ss_pred CCeEEE---eccCCcceEEEEEccCCCe----EEEEeCCCcEEEEECCCCeEeeeeeEEecccc--------cCCCCCeE
Q 004410 460 RCQVVD---YTDIREIVSAVCYCPDGKG----GIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK--------KLPGKRIT 524 (755)
Q Consensus 460 ~~~~~~---~~~~~~~V~~v~~spdg~~----la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~--------~~~~~~I~ 524 (755)
...... ...+...+.++++.++... +++++.||.|++||++........ ..+..+. ..+...|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~ 277 (368)
T 3mmy_A 199 NQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN-FTFKCHRSNGTNTSAPQDIYAVN 277 (368)
T ss_dssp SSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS-EEEECSEEC----CCCEEECCEE
T ss_pred cccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc-eeeeeeecccccccccccccceE
Confidence 765442 2234456677777776655 999999999999999987421100 0111111 11223799
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+++|+| ++.+|++++.||.|++||..+....... ..|...|.+++|+|+|++|++++.|+..+.|++-+.
T Consensus 278 ~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 278 GIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTS--EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEEECT-TTCCEEEEETTSCEEEEETTTTEEEEEC--CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred EEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEe--cCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 999999 8899999999999999999986655444 678899999999999999999999987666665443
No 78
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-30 Score=307.54 Aligned_cols=250 Identities=20% Similarity=0.331 Sum_probs=212.9
Q ss_pred eeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 278 QEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
..+.+|.+.|++|+|+|++ ++|+||+.|++|+||++.+.....
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~------------------------------------ 419 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY------------------------------------ 419 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS------------------------------------
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc------------------------------------
Confidence 4588999999999999864 799999999999999986542100
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSV 434 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i 434 (755)
......+.+|...|.+++|+|++ +|++++.|++|+|||+.+++++..+ .|...|.++
T Consensus 420 ---------------------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~ 478 (694)
T 3dm0_A 420 ---------------------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478 (694)
T ss_dssp ---------------------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred ---------------------ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE
Confidence 11234678999999999999999 9999999999999999999998887 499999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe----ccCCcceEEEEEccCC--CeEEEEeCCCcEEEEECCCCeEeeee
Q 004410 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY----TDIREIVSAVCYCPDG--KGGIVGTMTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~----~~~~~~V~~v~~spdg--~~la~gs~dg~I~iwD~~~~~~~~~~ 508 (755)
+|+| ++++|++|+.|++|++||+........ ..|...|.+++|+|++ ..|++|+.||+|++||++++++...
T Consensus 479 ~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~- 556 (694)
T 3dm0_A 479 AFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST- 556 (694)
T ss_dssp EECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-
T ss_pred EEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-
Confidence 9999 999999999999999999977655443 3577889999999987 5799999999999999998876543
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
...|...|++++|+| ++.+|++++.|+.|+|||+.+...... ..+...|.+++|+|++.+|++++ |+.
T Consensus 557 -------~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~-~~~ 624 (694)
T 3dm0_A 557 -------LAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYS---LEANSVIHALCFSPNRYWLCAAT-EHG 624 (694)
T ss_dssp -------ECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEEC---CBCSSCEEEEEECSSSSEEEEEE-TTE
T ss_pred -------EcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEE---ecCCCcEEEEEEcCCCcEEEEEc-CCC
Confidence 234678999999999 899999999999999999988655443 34567899999999999888776 556
Q ss_pred EEEEEcCCCC
Q 004410 589 IYIWNYSNQD 598 (755)
Q Consensus 589 I~iWd~~~~~ 598 (755)
|+|||+.+++
T Consensus 625 i~iwd~~~~~ 634 (694)
T 3dm0_A 625 IKIWDLESKS 634 (694)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCC
Confidence 9999998765
No 79
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.5e-32 Score=286.23 Aligned_cols=250 Identities=18% Similarity=0.237 Sum_probs=199.3
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCcE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV 308 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~I 308 (755)
+.+|.+.|.+++|+|+|++||+|+.|++|+||++..... .....+.+|.+.|++++|+| ++++||+|+.|++|
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-----ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-----EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-----EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 457888999999999999999999999999999765432 12356889999999999986 48999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
+|||+.++.. ..+..+.+|.
T Consensus 84 ~iWd~~~~~~------------------------------------------------------------~~~~~~~~h~ 103 (316)
T 3bg1_A 84 IIWREENGTW------------------------------------------------------------EKSHEHAGHD 103 (316)
T ss_dssp EEECCSSSCC------------------------------------------------------------CEEEEECCCS
T ss_pred EEEECCCCcc------------------------------------------------------------eEEEEccCCC
Confidence 9999876531 1134567899
Q ss_pred CCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCeEE---EEE-ecCCcEEEEEEeeCC-----------------CCEE
Q 004410 389 SEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCL---RVF-SHNNYVTSVAFNPVD-----------------DNYF 444 (755)
Q Consensus 389 ~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~~~---~~~-~h~~~V~~i~fsp~d-----------------~~~l 444 (755)
..|.+++|+|+ + +|++++.|++|++||+..+... ..+ .|...|.+++|+| + +.+|
T Consensus 104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 182 (316)
T 3bg1_A 104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRF 182 (316)
T ss_dssp SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBE
T ss_pred CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceE
Confidence 99999999997 6 8999999999999999876322 222 4888999999999 5 4689
Q ss_pred EEEeCCCcEEEEEcCCC---eEE-EeccCCcceEEEEEccCC----CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc
Q 004410 445 ISGSIDGKVRIWEVRRC---QVV-DYTDIREIVSAVCYCPDG----KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~---~~~-~~~~~~~~V~~v~~spdg----~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
++|+.|++|++||++.. +.+ .+..|...|.+++|+|++ ++|++|+.||+|++||+.+.......... .
T Consensus 183 ~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~----~ 258 (316)
T 3bg1_A 183 ASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL----L 258 (316)
T ss_dssp ECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCE----E
T ss_pred EEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhh----h
Confidence 99999999999999754 233 567899999999999986 88999999999999999863110000000 1
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
..+...|++++|+| ++.+|++++.|+.|+||+..
T Consensus 259 ~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 259 HKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECSSCEEEEEECT-TTCCEEEEESSSCEEEEEEC
T ss_pred hcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEEC
Confidence 22467899999999 88999999999999999864
No 80
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.2e-30 Score=284.89 Aligned_cols=299 Identities=13% Similarity=0.176 Sum_probs=230.6
Q ss_pred eEEEEECCCCcccccccccceeeecccccEEEEEEecCCC-EEEEEcCCCcEEEEEc----cCCe------eeeeeec--
Q 004410 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKV----IEHE------RLDGFDV-- 324 (755)
Q Consensus 258 ~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~-~LaSgs~Dg~I~vWdv----~~~~------~~~~~~~-- 324 (755)
.+.+|+.......+ ....|.+.|.+++|+|+|+ +||+|+.||.|+||++ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 1r5m_A 26 IDSSDDLDGFVKIL-------KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPF 98 (425)
T ss_dssp --------CCCEEC-------EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCC
T ss_pred ccccccchhhhhhe-------eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccc
Confidence 34567654433222 2345679999999999999 9999999999999999 8877 3333333
Q ss_pred --------CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 325 --------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 325 --------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+...+.++.|.++. ..++.++.++.+.+|+ .....+..+.+|...|.+++|
T Consensus 99 ~~~~~~~~~~~~v~~~~~s~~~----------------~~l~~~~~dg~i~i~~-----~~~~~~~~~~~~~~~v~~~~~ 157 (425)
T 1r5m_A 99 ALSASSGKTTNQVTCLAWSHDG----------------NSIVTGVENGELRLWN-----KTGALLNVLNFHRAPIVSVKW 157 (425)
T ss_dssp CCC------CBCEEEEEECTTS----------------SEEEEEETTSCEEEEE-----TTSCEEEEECCCCSCEEEEEE
T ss_pred cccccccCCCCceEEEEEcCCC----------------CEEEEEeCCCeEEEEe-----CCCCeeeeccCCCccEEEEEE
Confidence 12233444444322 1233455666777775 345667888999999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCc---------------EEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY---------------VTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~---------------V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
+|++ +|++++.|+.|++||+.+++.+..+. +... +.+++|+| + ..+++++.||.|++||+.
T Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~ 235 (425)
T 1r5m_A 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQIT 235 (425)
T ss_dssp CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETT
T ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcC
Confidence 9999 99999999999999999999988885 4444 99999998 5 568999999999999999
Q ss_pred CCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 460 RCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 460 ~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
+++.+ .+..|...|.+++|+|++++|++++.||.|++||+.+++.... ...+...|++++|+| ++ ++++
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------~~~~~~~i~~~~~~~-~~-~l~~ 305 (425)
T 1r5m_A 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC--------FYGHSQSIVSASWVG-DD-KVIS 305 (425)
T ss_dssp CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE--------ECCCSSCEEEEEEET-TT-EEEE
T ss_pred CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE--------ecCCCccEEEEEECC-CC-EEEE
Confidence 87665 5667889999999999999999999999999999998765543 233667899999999 66 9999
Q ss_pred EECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 539 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++.|+.|++||..+....... ..|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 306 ~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 306 CSMDGSVRLWSLKQNTLLALS--IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EETTSEEEEEETTTTEEEEEE--ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EeCCCcEEEEECCCCcEeEec--ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 999999999999876655544 5688899999999999999999999999999998664
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=2.4e-30 Score=287.98 Aligned_cols=268 Identities=23% Similarity=0.452 Sum_probs=221.8
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
.++++++++|++|+.||.|+||+..+.. ....+.+|.+.|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~-- 205 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM-- 205 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE--
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCe-------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE--
Confidence 3566699999999999999999976543 33567899999999999 789999999999999999987653
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
+..+.+|...|.+++|++ +
T Consensus 206 ------------------------------------------------------------~~~~~~h~~~v~~l~~~~-~ 224 (435)
T 1p22_A 206 ------------------------------------------------------------LNTLIHHCEAVLHLRFNN-G 224 (435)
T ss_dssp ------------------------------------------------------------EEEECCCCSCEEEEECCT-T
T ss_pred ------------------------------------------------------------EEEEcCCCCcEEEEEEcC-C
Confidence 344567899999999974 4
Q ss_pred eEEEEeCCCcEEEEeCCCCeEE---EEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCL---RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA 475 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~---~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~ 475 (755)
.|++++.|++|++||+.++... ..+ .|...|.+++| ++++|++|+.||.|++||+++++.+ .+..|...|.+
T Consensus 225 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 301 (435)
T 1p22_A 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 301 (435)
T ss_dssp EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEE
Confidence 9999999999999999887655 333 48999999998 4689999999999999999998877 56778899999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG 555 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~ 555 (755)
+++ ++.+|++|+.||.|++||+++++.+.. ...|...|++++| ++.+|++++.||.|++||......
T Consensus 302 ~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~ 368 (435)
T 1p22_A 302 LQY--RDRLVVSGSSDNTIRLWDIECGACLRV--------LEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALD 368 (435)
T ss_dssp EEE--ETTEEEEEETTSCEEEEETTTCCEEEE--------ECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTS
T ss_pred EEe--CCCEEEEEeCCCeEEEEECCCCCEEEE--------EeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCC
Confidence 999 578999999999999999999877653 2346778999998 568999999999999999765431
Q ss_pred e-------EEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 556 K-------FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 556 ~-------~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
. .......|.+.|++++| ++++|++++.||.|++||+.+..
T Consensus 369 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 369 PRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp TTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred ccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 0 22223678999999999 78999999999999999998875
No 82
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-29 Score=269.70 Aligned_cols=247 Identities=21% Similarity=0.349 Sum_probs=215.5
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
...+.+|.+.|++++|+|++++||+++.||.|+|||+.+++.
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------------------- 66 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-------------------------------------- 66 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE--------------------------------------
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh--------------------------------------
Confidence 346889999999999999999999999999999999877643
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVA 435 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~ 435 (755)
+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+.+...|.+++
T Consensus 67 ------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 122 (369)
T 3zwl_B 67 ------------------------LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVE 122 (369)
T ss_dssp ------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred ------------------------hhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEE
Confidence 34456799999999999999 99999999999999999999999999999999999
Q ss_pred EeeCCCCEEEEEeCC-----CcEEEEEcCCCe------------EEEeccCCc--ceEEEEEccCCCeEEEEeCCCcEEE
Q 004410 436 FNPVDDNYFISGSID-----GKVRIWEVRRCQ------------VVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRF 496 (755)
Q Consensus 436 fsp~d~~~l~sgs~D-----g~V~iwdl~~~~------------~~~~~~~~~--~V~~v~~spdg~~la~gs~dg~I~i 496 (755)
|+| ++++|++++.+ +.|++||+.... ......+.. .+.+++|+|++++|++++.+|.|++
T Consensus 123 ~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 201 (369)
T 3zwl_B 123 FSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201 (369)
T ss_dssp ECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred Ecc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence 999 99999999999 999999997642 122334444 8999999999999999999999999
Q ss_pred EECCC-CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 497 YDIKD-NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 497 wD~~~-~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
||+.+ ...... ...+...|++++|+| ++.+|++++.|+.|++||..+....... .+...+..++|+|
T Consensus 202 ~d~~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~ 269 (369)
T 3zwl_B 202 YDVSNNYEYVDS--------IDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKY---ETDCPLNTAVITP 269 (369)
T ss_dssp EETTTTTEEEEE--------EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECS
T ss_pred EECCCCcEeEEE--------EecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeee---cCCCCceeEEecC
Confidence 99998 554432 233667899999999 8999999999999999999876555443 3778899999999
Q ss_pred CCCEEEEEeCCC--------------cEEEEEcCCCC
Q 004410 576 DGKHVVSPSEDS--------------NIYIWNYSNQD 598 (755)
Q Consensus 576 dg~~L~sgs~Dg--------------~I~iWd~~~~~ 598 (755)
+++++++++.++ .|++||+.+++
T Consensus 270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp SSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 999999999998 89999998876
No 83
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=7.6e-30 Score=274.89 Aligned_cols=259 Identities=12% Similarity=0.228 Sum_probs=211.6
Q ss_pred eecccccEEEEEEecC----CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 280 FLAHEGSILTMKFSLD----GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 280 l~~H~~~V~~l~fspd----g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+|.+.|++++|+|+ ..++++++.++.|+||++.+++.+..+..
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~------------------------------- 62 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS------------------------------- 62 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE-------------------------------
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee-------------------------------
Confidence 4589999999999984 45666666677999999987654433221
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC----C-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCC
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN----G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN 429 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~----~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~ 429 (755)
+....|...|.+++|+|+ + +|++++.|+.|++||+.+++.+..+. |..
T Consensus 63 --------------------------~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 116 (366)
T 3k26_A 63 --------------------------YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN 116 (366)
T ss_dssp --------------------------EECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS
T ss_pred --------------------------ccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC
Confidence 111237789999999998 6 89999999999999999999998886 999
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe----ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~----~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
.|++++|+|.++++|++|+.||.|++||+++++.+.. ..|...|.+++|+|++++|++++.||.|++||+++++..
T Consensus 117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence 9999999997789999999999999999999888754 578999999999999999999999999999999987644
Q ss_pred eeeeE--------------------EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee----------
Q 004410 506 QQNQI--------------------CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG---------- 555 (755)
Q Consensus 506 ~~~~~--------------------~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~---------- 555 (755)
..... ........+...|++++|+ +.++++++.|+.|++||..+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 273 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 273 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCc
Confidence 22110 0000112377889999998 46999999999999999876433
Q ss_pred --eEEEeeeccCCceEEEEEecC--CCEEEEEeCCCcEEEEEcCCCC
Q 004410 556 --KFKASAFRVAGSQMFATFTSD--GKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 556 --~~~~~~~~~~~~v~~l~fspd--g~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
........|...|++++|+|+ +++|++|+.||.|++||+.+++
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 233334668889999999999 9999999999999999998765
No 84
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=3.6e-29 Score=270.69 Aligned_cols=244 Identities=16% Similarity=0.224 Sum_probs=209.7
Q ss_pred eecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
+..|.++|++++|+|++++||+++.|+.|+|||+.+++.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~----------------------------------------- 42 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW----------------------------------------- 42 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------------------------------
Confidence 456899999999999999999999999999999876641
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEEE
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVA 435 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~ 435 (755)
+.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++....+ .|...|.+++
T Consensus 43 -------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 103 (372)
T 1k8k_C 43 -------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 103 (372)
T ss_dssp -------------------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEE
T ss_pred -------------------EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEE
Confidence 0144567899999999999999 9999999999999999998865554 4889999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCe----EE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECC----------
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK---------- 500 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~---------- 500 (755)
|+| ++++|++++.|+.|++||+.... .. ....|...|++++|+|++++|++++.||.|++||++
T Consensus 104 ~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 104 WAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp ECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred ECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 999 99999999999999999998875 22 235678899999999999999999999999999965
Q ss_pred --------CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEE
Q 004410 501 --------DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFAT 572 (755)
Q Consensus 501 --------~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~ 572 (755)
.+..+.. ...|...|++++|+| ++.+|++++.|+.|++||..+....... ..|...|.+++
T Consensus 183 ~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~ 251 (372)
T 1k8k_C 183 TPWGSKMPFGELMFE--------SSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATL--ASETLPLLAVT 251 (372)
T ss_dssp BTTBSCCCTTCEEEE--------CCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEE--ECSSCCEEEEE
T ss_pred cccccccchhhheEe--------cCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEE--ccCCCCeEEEE
Confidence 3333322 224677899999999 8899999999999999999876655554 56888999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCC
Q 004410 573 FTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 573 fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
|+|++++|+++ .|+.|++|++.+
T Consensus 252 ~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 252 FITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEETTEEEEEE-TTSSCEEEEEET
T ss_pred EecCCCEEEEE-eCCeEEEEEccC
Confidence 99999988888 999999999988
No 85
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-30 Score=287.15 Aligned_cols=289 Identities=16% Similarity=0.183 Sum_probs=230.9
Q ss_pred cccEEEEEEecCCC-EEEEE----------cCCCcEEEEEccCCeee---eeeecCCCCCceeEEeeCCCCceeEEeecC
Q 004410 284 EGSILTMKFSLDGQ-YLASG----------GEDGTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349 (755)
Q Consensus 284 ~~~V~~l~fspdg~-~LaSg----------s~Dg~I~vWdv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (755)
...|.+++|+|+|+ +||+| +.|+.|+||++.++... ..+ .+...+.++.|.++..
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~---------- 80 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK---------- 80 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS----------
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC----------
Confidence 35688999999997 99999 89999999999887532 222 2333445555544321
Q ss_pred cceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCe------E
Q 004410 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDR------C 421 (755)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWdl~s~~------~ 421 (755)
.++.++.++.+.+|+........+.+..+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++ .
T Consensus 81 ------~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 154 (416)
T 2pm9_A 81 ------IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT 154 (416)
T ss_dssp ------CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC
T ss_pred ------eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc
Confidence 23344556777888765532223467888999999999999998 5 99999999999999999886 3
Q ss_pred EEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-eccC------CcceEEEEEccCC-CeEEEEe
Q 004410 422 LRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDI------REIVSAVCYCPDG-KGGIVGT 489 (755)
Q Consensus 422 ~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~~------~~~V~~v~~spdg-~~la~gs 489 (755)
...+ .|...|++++|+|..+.+|++++.||.|++||+++++.+. +..+ ...|.+++|+|++ .+|++++
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (416)
T 2pm9_A 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT 234 (416)
T ss_dssp CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE
T ss_pred ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE
Confidence 3332 4889999999999338999999999999999999988774 3333 6789999999997 6899999
Q ss_pred CCC---cEEEEECCCCe-EeeeeeEEeccccc-CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeecc
Q 004410 490 MTG---NCRFYDIKDNQ-LYQQNQICLQGKKK-LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRV 564 (755)
Q Consensus 490 ~dg---~I~iwD~~~~~-~~~~~~~~~~~~~~-~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 564 (755)
.++ .|++||++++. .... .. .|...|++++|+|.++.+|++++.|+.|++||..+....... ..|
T Consensus 235 ~d~~~~~i~~~d~~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~--~~~ 304 (416)
T 2pm9_A 235 GSDNDPSILIWDLRNANTPLQT--------LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF--PAR 304 (416)
T ss_dssp CCSSSCCCCEEETTSTTSCSBC--------CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE--ECS
T ss_pred CCCCCceEEEEeCCCCCCCcEE--------eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee--cCC
Confidence 998 99999999863 2221 22 467899999999988899999999999999999886555444 678
Q ss_pred CCceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCCc
Q 004410 565 AGSQMFATFTSDG-KHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 565 ~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
...|.+++|+|++ .+|++++.|+.|+||++.+...
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 8999999999999 8999999999999999998763
No 86
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=2.2e-29 Score=274.69 Aligned_cols=252 Identities=12% Similarity=0.171 Sum_probs=204.0
Q ss_pred cceeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 276 TGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
..+.+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------------------- 111 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF--------------------------------- 111 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE---------------------------------
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee---------------------------------
Confidence 334678899999999999999 9999999999999999976643211
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCC
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNN 429 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~ 429 (755)
....+|...|.+++|+| ++ +|++++.|+.|++||+.+........ |..
T Consensus 112 ---------------------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 164 (383)
T 3ei3_B 112 ---------------------------IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDY 164 (383)
T ss_dssp ---------------------------ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSC
T ss_pred ---------------------------eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCC
Confidence 12246999999999999 55 99999999999999999644433333 458
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCC-eEEEEeCCCcEEEEECCC----CeE
Q 004410 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKD----NQL 504 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~----~~~ 504 (755)
.|.+++|+| ++++|++|+.|+.|++||++......+..|...|.+++|+|+++ +|++|+.|+.|++||+++ +..
T Consensus 165 ~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 243 (383)
T 3ei3_B 165 WYCCVDVSV-SRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY 243 (383)
T ss_dssp CEEEEEEET-TTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE
T ss_pred CeEEEEECC-CCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce
Confidence 899999999 99999999999999999997666667888999999999999999 899999999999999997 333
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeee-----cc----------CCceE
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF-----RV----------AGSQM 569 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-----~~----------~~~v~ 569 (755)
... + .+...|++++|+|.++.+|++++.|+.|++||+.+.......... .| ...+.
T Consensus 244 ~~~----~-----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 244 IAE----M-----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp EEE----E-----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred EEE----e-----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence 321 1 256799999999977889999999999999998865433222101 11 23455
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 570 FATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 570 ~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.++|+|+|++ +++.|+.|+|||+.+++.
T Consensus 315 ~~~~s~dg~~--s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 315 VAGRYPDDQL--LLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp EEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred EEEecCCccc--ccCCCCeEEEEecCCCce
Confidence 5777777777 788999999999998874
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=6.4e-30 Score=284.64 Aligned_cols=254 Identities=14% Similarity=0.148 Sum_probs=202.9
Q ss_pred ceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 277 GQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
.+...+|...|+||+|+| ++++||+|+.||.|+|||+.+++..
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~------------------------------------ 155 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP------------------------------------ 155 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC------------------------------------
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce------------------------------------
Confidence 345677999999999999 5789999999999999998765421
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCc
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNY 430 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~ 430 (755)
.+..+.+|.+.|++|+|+| ++ +|++++.|++|++||++++....... +...
T Consensus 156 ------------------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 211 (435)
T 4e54_B 156 ------------------------TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW 211 (435)
T ss_dssp ------------------------EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCC
T ss_pred ------------------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCcc
Confidence 1233568999999999998 45 99999999999999998776554443 4456
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCC-eEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
+.+++|+| ++.+|++|+.||.|++||++...+..+..|...|++++|+|++. +|++|+.|+.|++||+++.+......
T Consensus 212 ~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~ 290 (435)
T 4e54_B 212 FCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL 290 (435)
T ss_dssp CCCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS
T ss_pred EEEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE
Confidence 88999999 99999999999999999998877777888999999999999886 67789999999999999876443211
Q ss_pred EEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC------CceEEEEEecCCCEEEEE
Q 004410 510 ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA------GSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 510 ~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~------~~v~~l~fspdg~~L~sg 583 (755)
....|...|++++|+| ++.+|++++.|+.|+|||..+....... ..|. ..+..+.|+|++.+++++
T Consensus 291 -----~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
T 4e54_B 291 -----YSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGL--IPHPHRHFQHLTPIKAAWHPRYNLIVVG 362 (435)
T ss_dssp -----BCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEE--CCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred -----EeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEE--ecccccccccceeEEEEEcCCCCEEEEE
Confidence 1234678999999999 8999999999999999998876544433 2221 123445677777777666
Q ss_pred e------------CCCcEEEEEcCCCCc
Q 004410 584 S------------EDSNIYIWNYSNQDK 599 (755)
Q Consensus 584 s------------~Dg~I~iWd~~~~~~ 599 (755)
+ .++.|++||..+++.
T Consensus 363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~~ 390 (435)
T 4e54_B 363 RYPDPNFKSCTPYELRTIDVFDGNSGKM 390 (435)
T ss_dssp CCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred EcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence 4 345799999998873
No 88
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-29 Score=272.56 Aligned_cols=257 Identities=18% Similarity=0.232 Sum_probs=212.4
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC--CCEEEEEcC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGE 304 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd--g~~LaSgs~ 304 (755)
....+.+|...+.+++|+|++++||+|+.||.|+||++.... ....+.+.+|.+.|++++|+|+ +++|++|+.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence 345678899999999999999999999999999999976322 2234567899999999999987 999999999
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
||.|+|||+.+++.. .+..+
T Consensus 78 dg~v~iwd~~~~~~~------------------------------------------------------------~~~~~ 97 (379)
T 3jrp_A 78 DGKVLIWKEENGRWS------------------------------------------------------------QIAVH 97 (379)
T ss_dssp TSCEEEEEEETTEEE------------------------------------------------------------EEEEE
T ss_pred CCEEEEEEcCCCcee------------------------------------------------------------Eeeee
Confidence 999999999776421 13445
Q ss_pred cCCCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCeE---EEEEecCCcEEEEEEeeC------------CCCEEEE
Q 004410 385 QGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPV------------DDNYFIS 446 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~~---~~~~~h~~~V~~i~fsp~------------d~~~l~s 446 (755)
.+|...|.+++|+|+ + +|++++.|+.|++||+.++.. .....|...|++++|+|. ++.+|++
T Consensus 98 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (379)
T 3jrp_A 98 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 177 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEE
T ss_pred cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEE
Confidence 679999999999998 7 999999999999999988733 233359999999999994 5899999
Q ss_pred EeCCCcEEEEEcCCCe----EE-EeccCCcceEEEEEccC---CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 447 GSIDGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCPD---GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 447 gs~Dg~V~iwdl~~~~----~~-~~~~~~~~V~~v~~spd---g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
++.||.|++||++++. .. .+..|...|++++|+|+ +++|++++.||.|++||+.++........ .....
T Consensus 178 ~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~ 254 (379)
T 3jrp_A 178 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL---LKEEK 254 (379)
T ss_dssp EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE---SSSSC
T ss_pred EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeee---ecccc
Confidence 9999999999998653 22 56678899999999999 89999999999999999998642211111 11233
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
+...|++++|+| ++.+|++++.||.|++|+...
T Consensus 255 ~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 255 FPDVLWRASWSL-SGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEE
T ss_pred CCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCC
Confidence 667899999999 889999999999999999764
No 89
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=5e-29 Score=279.16 Aligned_cols=302 Identities=19% Similarity=0.262 Sum_probs=235.0
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEe--cCCCEEEEEcCC
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS--LDGQYLASGGED 305 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fs--pdg~~LaSgs~D 305 (755)
+..+.+|...+.+++|+|++ +|++|+.||+|+||++.... ..+.+.+|.+.|.+++|+ +++.+|++|+.|
T Consensus 155 ~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d 226 (464)
T 3v7d_B 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 226 (464)
T ss_dssp EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEEEESSSCEEEEEEETT
T ss_pred EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-------EEEEECCCCCccEEEEEecCCCCCEEEEEcCC
Confidence 34456778889999999998 99999999999999987543 335678999999999999 578999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|++||+.++............. . ....+. .....+..+.
T Consensus 227 ~~i~vwd~~~~~~~~~~~~~~~~~-~-----------------------------------~~~~~~---~~~~~~~~~~ 267 (464)
T 3v7d_B 227 NTLHVWKLPKESSVPDHGEEHDYP-L-----------------------------------VFHTPE---ENPYFVGVLR 267 (464)
T ss_dssp SCEEEEECCCCCCC------CCSS-E-----------------------------------EESCGG---GCTTEEEEEC
T ss_pred CcEEEeeCCCCcccccccccCCcc-e-----------------------------------EeeccC---CCeEEEEEcc
Confidence 999999998776443221111000 0 000000 0011245678
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
+|...|.++. +++ +|++++.|+.|++||+.+++++..+. |...|++++|+| ++++|++|+.||.|++||+++++.
T Consensus 268 ~~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~ 344 (464)
T 3v7d_B 268 GHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGEL 344 (464)
T ss_dssp CCSSCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEE
T ss_pred CccceEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcE
Confidence 8999998884 455 99999999999999999999998885 999999999999 999999999999999999999887
Q ss_pred E-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 464 ~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+ .+..|...|.+++|+ +++|++++.||.|++||+.++...... .+...+..++|+| ++.++++++ |
T Consensus 345 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~l~~~~-d 411 (464)
T 3v7d_B 345 MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY---------HHTNLSAITTFYV-SDNILVSGS-E 411 (464)
T ss_dssp EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE---------ECTTCCCEEEEEE-CSSEEEEEE-T
T ss_pred EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee---------cCCCCccEEEEEe-CCCEEEEec-C
Confidence 7 577899999999997 589999999999999999987654321 1445677889999 888999988 9
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+.|++||..+....... ...+...|.+++|+ +..++++++.||.+.+|-+
T Consensus 412 g~i~iwd~~~g~~~~~~-~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 412 NQFNIYNLRSGKLVHAN-ILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp TEEEEEETTTCCEEESC-TTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CeEEEEECCCCcEEehh-hccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 99999999886544321 25678899999997 4455666667776665543
No 90
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.5e-29 Score=267.73 Aligned_cols=267 Identities=13% Similarity=0.164 Sum_probs=213.5
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCc
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGT 307 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~ 307 (755)
.+.+|.+.+.+++|+|++++||+|+.||.|+||++....... .....+.+|.+.|.+++|+| |+++|++|+.||.
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW---ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE---EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc---eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 356788899999999999999999999999999987543221 23456789999999999999 6999999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|+|||+.++...... ...+++..+.+|
T Consensus 83 v~vwd~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~~~ 109 (351)
T 3f3f_A 83 VKLWEEDPDQEECSG-----------------------------------------------------RRWNKLCTLNDS 109 (351)
T ss_dssp EEEEEECTTSCTTSS-----------------------------------------------------CSEEEEEEECCC
T ss_pred EEEEecCCCcccccc-----------------------------------------------------cCcceeeeeccc
Confidence 999999776421000 000234567789
Q ss_pred CCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCeEEEEE--------------ecCCcEEEEEEeeC--CCCEEEEEe
Q 004410 388 SSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVF--------------SHNNYVTSVAFNPV--DDNYFISGS 448 (755)
Q Consensus 388 ~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~~~~~~--------------~h~~~V~~i~fsp~--d~~~l~sgs 448 (755)
...|.+++|+|+ + +|++++.|+.|++||+.+++.+..+ .|...+.+++|+|. ++.+|++++
T Consensus 110 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 189 (351)
T 3f3f_A 110 KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA 189 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE
T ss_pred CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec
Confidence 999999999998 7 8999999999999999877654332 37788999999993 289999999
Q ss_pred CCCcEEEEEcCCCeE---EEeccCCcceEEEEEccCC----CeEEEEeCCCcEEEEECCCCeEeeee-------------
Q 004410 449 IDGKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDG----KGGIVGTMTGNCRFYDIKDNQLYQQN------------- 508 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~---~~~~~~~~~V~~v~~spdg----~~la~gs~dg~I~iwD~~~~~~~~~~------------- 508 (755)
.|+.+.+|+...++. ..+..|...|++++|+|++ ++|++|+.||.|++||++.+......
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 269 (351)
T 3f3f_A 190 LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS 269 (351)
T ss_dssp TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCC
Confidence 999999998888764 2566788999999999998 89999999999999999865221100
Q ss_pred -------------------------eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 509 -------------------------QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 509 -------------------------~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
..........|...|++++|+| ++.+|++++.|+.|+||+....
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ---------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTT
T ss_pred cccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcEEEEecCcC
Confidence 0011122345778999999999 8899999999999999998764
No 91
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.3e-30 Score=290.26 Aligned_cols=204 Identities=14% Similarity=0.135 Sum_probs=168.0
Q ss_pred EecCCCCCEEEEEEcCC------C-eEEEEeCCCcEEEEeCCCCeE-----------EEEE-ecCCcEEEEEEeeCCCCE
Q 004410 383 EFQGHSSEVLDLSWSKN------G-FLLSSSADKTVRLWQVGIDRC-----------LRVF-SHNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~------~-~L~s~s~Dg~V~iWdl~s~~~-----------~~~~-~h~~~V~~i~fsp~d~~~ 443 (755)
.+.+|.+.|.+++|+|+ + +|++++.||+|+|||+..+.+ ...+ .|...|++++|+| + ..
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~ 279 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TT 279 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-Ce
Confidence 35568889999999996 3 899999999999999987642 1234 4889999999998 4 58
Q ss_pred EEEEeCCCcEEEEEcCCCeE--EEeccCCcceEEE--EEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 444 FISGSIDGKVRIWEVRRCQV--VDYTDIREIVSAV--CYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~--~~~~~~~~~V~~v--~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
|++|+.||+|++||++++.. ..+..|...|++| +|+|+| .+|++|+.|++|+|||+++++...... ++.
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~----~~~-- 353 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV----SRF-- 353 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE----EEC--
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc----ccc--
Confidence 99999999999999987632 3467899999999 578888 899999999999999999876543322 111
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
....|.+++|+| ++..+++++.|++|++||.......... .+|...|++++|+|+|++|++|+.||+|+|||+...
T Consensus 354 ~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l--~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 354 RGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPL--VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp SCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEE--EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred ccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceee--ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 113478899999 7888999999999999999876544443 569999999999999999999999999999998643
No 92
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=1.2e-28 Score=295.83 Aligned_cols=332 Identities=17% Similarity=0.215 Sum_probs=256.6
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
..+..|...+.+++|+|++++|++|+.||.|+||++..+. ..+.+.+|.+.|++++|+|++++|++++.||.|
T Consensus 49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 121 (814)
T 3mkq_A 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121 (814)
T ss_dssp EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEE
Confidence 3455667788899999999999999999999999987543 335678899999999999999999999999999
Q ss_pred EEEEccCC-eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 309 RVWKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 309 ~vWdv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
++|++.++ .....+..+...+.++.|.+... ...+.++.++.+.+|+... ..+...+..|
T Consensus 122 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---------------~~l~~~~~dg~v~vwd~~~----~~~~~~~~~~ 182 (814)
T 3mkq_A 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDP---------------STFASGCLDRTVKVWSLGQ----STPNFTLTTG 182 (814)
T ss_dssp EEEEGGGTSEEEEEEECCSSCEEEEEEETTEE---------------EEEEEEETTSEEEEEETTC----SSCSEEEECC
T ss_pred EEEECCCCceEEEEEcCCCCcEEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCC----CcceeEEecC
Confidence 99999887 55566666666666666655221 2334456677777776543 2334455544
Q ss_pred -CCCEEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 388 -SSEVLDLSWSK--NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 388 -~~~V~~l~~s~--~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
...|.+++|+| ++ .|++++.|+.|++||+.+++++..+. |...|++++|+| ++++|++++.||.|++||+.+++
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCS
T ss_pred CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc
Confidence 48999999999 77 99999999999999999999988886 899999999999 99999999999999999999987
Q ss_pred EE-EeccCCcceEEEEEccCCCe-EEEEeCCCcEEEEECCCCeEeeeee----EEe----------------c-------
Q 004410 463 VV-DYTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKDNQLYQQNQ----ICL----------------Q------- 513 (755)
Q Consensus 463 ~~-~~~~~~~~V~~v~~spdg~~-la~gs~dg~I~iwD~~~~~~~~~~~----~~~----------------~------- 513 (755)
.+ .+..+...+.+++|+|+|.. +++++.++.+.+|++.......... ... .
T Consensus 262 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (814)
T 3mkq_A 262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ 341 (814)
T ss_dssp EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccccc
Confidence 76 56677889999999999874 3555557788999876543211110 000 0
Q ss_pred --------ccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC
Q 004410 514 --------GKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 514 --------~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
.....+...+.+++|+| +++++++++ ++.+.+|+....... +.+.+.+++|+|+|++|++++.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-------~~~~i~~~~~spdg~~la~~~~ 412 (814)
T 3mkq_A 342 DEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-------AFGKCQDFVWGPDSNSYALIDE 412 (814)
T ss_dssp SSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-------EEEECSEEEECTTSSCEEEECT
T ss_pred CccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-------CCCceEEEEEeCCCCeEEEEeC
Confidence 00112344678999999 889999988 899999997643322 2345678899999999999999
Q ss_pred CCcEEEEEcCC
Q 004410 586 DSNIYIWNYSN 596 (755)
Q Consensus 586 Dg~I~iWd~~~ 596 (755)
||.|++|+.-.
T Consensus 413 ~g~v~l~~~~~ 423 (814)
T 3mkq_A 413 TGQIKYYKNFK 423 (814)
T ss_dssp TCCEEEEETTE
T ss_pred CCcEEEEECCC
Confidence 99999997543
No 93
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=8.8e-29 Score=270.60 Aligned_cols=255 Identities=12% Similarity=0.175 Sum_probs=210.4
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.+.+.+|.+.|++|+|+| ++|++|+.||.|+||++.+++....
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~----------------------------------- 51 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP----------------------------------- 51 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----------------------------------
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-----------------------------------
Confidence 356789999999999998 7999999999999999976642100
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC----C----eEEEEeCCCcEEEEeCCCCeE-----EE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN----G----FLLSSSADKTVRLWQVGIDRC-----LR 423 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~----~----~L~s~s~Dg~V~iWdl~s~~~-----~~ 423 (755)
...+..+.+|...|.+++|+++ + +|++++.|+.|++||+.+++. +.
T Consensus 52 ---------------------~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 110 (397)
T 1sq9_A 52 ---------------------KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE 110 (397)
T ss_dssp ---------------------GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE
T ss_pred ---------------------CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccce
Confidence 1224566789999999999998 5 889999999999999998875 66
Q ss_pred EEe-c-----CCcEEEEEEe----eCCCCE-EEEEeCCCcEEEEEcCC------CeEE------Ee-------ccCCcce
Q 004410 424 VFS-H-----NNYVTSVAFN----PVDDNY-FISGSIDGKVRIWEVRR------CQVV------DY-------TDIREIV 473 (755)
Q Consensus 424 ~~~-h-----~~~V~~i~fs----p~d~~~-l~sgs~Dg~V~iwdl~~------~~~~------~~-------~~~~~~V 473 (755)
.+. | ...|.+++|+ | ++++ |++++.||.|++||+.+ ++.+ .+ ..+...|
T Consensus 111 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 189 (397)
T 1sq9_A 111 KLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 189 (397)
T ss_dssp EECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC
T ss_pred eecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCc
Confidence 664 6 4999999999 9 8999 99999999999999987 4322 33 4478889
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC---CCCeEEEEEcCCCCCEEEEEECC---CcEEE
Q 004410 474 SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP---GKRITGFQFSPSDPSKVIVTSAD---SLVRV 547 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~---~~~I~~v~fsp~d~~~l~s~s~D---g~I~i 547 (755)
++++|+|++ .|++++.||.|++||+++++.+..+.. ...| ...|++++|+| ++.+|++++.| +.|++
T Consensus 190 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i 262 (397)
T 1sq9_A 190 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES-----QHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITL 262 (397)
T ss_dssp CEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC-----CC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEE
T ss_pred eEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec-----cccccccCCccceEEECC-CCCEEEEEecCCCCceEEE
Confidence 999999999 999999999999999999877654221 0114 67899999999 89999999999 99999
Q ss_pred EECCcceeeEEEeeec-------------cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 548 LCGENVVGKFKASAFR-------------VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~-------------~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
||..+....... .. |...|.+++|+|++++|++++.||.|+|||+.+++.
T Consensus 263 ~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 263 YETEFGERIGSL--SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp EETTTCCEEEEE--CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred EECCCCccccee--ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 999876555444 44 889999999999999999999999999999988763
No 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=265.17 Aligned_cols=250 Identities=11% Similarity=0.201 Sum_probs=202.9
Q ss_pred eeeecccccEEEEEEecCCCE-EEEEcC---CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 278 QEFLAHEGSILTMKFSLDGQY-LASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~-LaSgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
+.+.+|.+.|.+++|+|++.. |++++. ||.|+||++.+++...
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~--------------------------------- 58 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL--------------------------------- 58 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE---------------------------------
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc---------------------------------
Confidence 346789999999999999965 456665 9999999998765321
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCe-EEEEE-ec
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQVGIDR-CLRVF-SH 427 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~---~-~L~s~s~Dg~V~iWdl~s~~-~~~~~-~h 427 (755)
....+|...|.+++|+|+ + +|++++.|+.|++||+.+++ ++..+ .|
T Consensus 59 ----------------------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 110 (357)
T 3i2n_A 59 ----------------------------LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGH 110 (357)
T ss_dssp ----------------------------EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred ----------------------------eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEec
Confidence 112358899999999998 5 99999999999999999887 77776 49
Q ss_pred CCcEEEEEE------eeCCCCEEEEEeCCCcEEEEEcCCCe-EE-EeccCC----cceEEEE----EccCCCeEEEEeCC
Q 004410 428 NNYVTSVAF------NPVDDNYFISGSIDGKVRIWEVRRCQ-VV-DYTDIR----EIVSAVC----YCPDGKGGIVGTMT 491 (755)
Q Consensus 428 ~~~V~~i~f------sp~d~~~l~sgs~Dg~V~iwdl~~~~-~~-~~~~~~----~~V~~v~----~spdg~~la~gs~d 491 (755)
...|.+++| +| ++++|++++.||.|++||+.++. .+ .+..+. ..+.+++ |+|++++|++++.|
T Consensus 111 ~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 189 (357)
T 3i2n_A 111 KEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN 189 (357)
T ss_dssp SSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT
T ss_pred ccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC
Confidence 999999965 56 89999999999999999999875 33 343333 3788888 78899999999999
Q ss_pred CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC--CCCEEEEEECCCcEEEEECCcceeeEEE---eeeccCC
Q 004410 492 GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS--DPSKVIVTSADSLVRVLCGENVVGKFKA---SAFRVAG 566 (755)
Q Consensus 492 g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~--d~~~l~s~s~Dg~I~iwd~~~~~~~~~~---~~~~~~~ 566 (755)
|.|++||+++++.... ..+...|++++|+|. ++.++++++.|+.|++||..+....... ....|..
T Consensus 190 ~~i~i~d~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 190 GDIKLFDLRNMALRWE---------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS 260 (357)
T ss_dssp SEEEEEETTTTEEEEE---------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS
T ss_pred CeEEEEECccCceeee---------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC
Confidence 9999999999886432 224578999999996 6789999999999999998764332221 1237899
Q ss_pred ceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCC
Q 004410 567 SQMFATFTSDGK-HVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 567 ~v~~l~fspdg~-~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.|++++|+|+++ +|++++.||.|++||+.++.
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 999999999999 89999999999999998765
No 95
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.3e-28 Score=271.73 Aligned_cols=260 Identities=19% Similarity=0.276 Sum_probs=210.2
Q ss_pred eeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 278 QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
....+|.+.|++++|+|+ +.+||+++.||.|+||++.+......
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~----------------------------------- 166 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE----------------------------------- 166 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------------------------
Confidence 345689999999999997 78999999999999999965321000
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeE-------EEEE-e
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-------LRVF-S 426 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~-------~~~~-~ 426 (755)
......++..+.+|...|.+++|+|++ +|++++.||+|++||+..+.. ...+ .
T Consensus 167 -----------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 229 (430)
T 2xyi_A 167 -----------------PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 229 (430)
T ss_dssp -----------------TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC
T ss_pred -----------------ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC
Confidence 000023466788999999999999987 899999999999999987322 2333 5
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC----eEEEeccCCcceEEEEEccCCC-eEEEEeCCCcEEEEECCC
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----QVVDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~----~~~~~~~~~~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~ 501 (755)
|...|.+++|+|.++.+|++++.||.|++||+++. ....+..|...|++++|+|++. .|++|+.||.|++||+++
T Consensus 230 h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 89999999999977889999999999999999976 2335668889999999999987 688999999999999997
Q ss_pred Ce-EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce------------eeEEEeeeccCCce
Q 004410 502 NQ-LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV------------GKFKASAFRVAGSQ 568 (755)
Q Consensus 502 ~~-~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~------------~~~~~~~~~~~~~v 568 (755)
.. .+.. ...|...|++++|+|.+..+|++++.|+.|+|||+.... ........+|...|
T Consensus 310 ~~~~~~~--------~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 381 (430)
T 2xyi_A 310 LKLKLHS--------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381 (430)
T ss_dssp TTSCSEE--------EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE
T ss_pred CCCCeEE--------eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc
Confidence 43 2221 224678999999999555789999999999999987622 12333336788899
Q ss_pred EEEEEecCCC-EEEEEeCCCcEEEEEcCCC
Q 004410 569 MFATFTSDGK-HVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 569 ~~l~fspdg~-~L~sgs~Dg~I~iWd~~~~ 597 (755)
.+++|+|+++ +|++++.||.|+||++...
T Consensus 382 ~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 382 SDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999999999 9999999999999999754
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-29 Score=299.06 Aligned_cols=256 Identities=19% Similarity=0.283 Sum_probs=210.8
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+.+.+|.+.|++++|+|+|++|++|+.||.|+||++..+..
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~--------------------------------------- 43 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH--------------------------------------- 43 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------------------------
Confidence 45789999999999999999999999999999999864321
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCcE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNYV 431 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~V 431 (755)
..+..+.+|.+.|.+++|+++ + +|++++.||+|++||+.+++ .+..+ .|...|
T Consensus 44 ---------------------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V 102 (753)
T 3jro_A 44 ---------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 102 (753)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ---------------------ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCe
Confidence 124567789999999999987 7 99999999999999999986 44444 499999
Q ss_pred EEEEEeeCC--CCEEEEEeCCCcEEEEEcCCC---eEEEeccCCcceEEEEEcc-------------CCCeEEEEeCCCc
Q 004410 432 TSVAFNPVD--DNYFISGSIDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCP-------------DGKGGIVGTMTGN 493 (755)
Q Consensus 432 ~~i~fsp~d--~~~l~sgs~Dg~V~iwdl~~~---~~~~~~~~~~~V~~v~~sp-------------dg~~la~gs~dg~ 493 (755)
++++|+| + +++|++|+.||.|++||++++ .......|...|.+++|+| ++..|++|+.||.
T Consensus 103 ~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 103 NSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred EEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 9999999 7 899999999999999999887 3345678899999999999 5999999999999
Q ss_pred EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC--CCEEEEEECCCcEEEEECCcceeeE---EEeeeccCCce
Q 004410 494 CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD--PSKVIVTSADSLVRVLCGENVVGKF---KASAFRVAGSQ 568 (755)
Q Consensus 494 I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d--~~~l~s~s~Dg~I~iwd~~~~~~~~---~~~~~~~~~~v 568 (755)
|++||++++........ ....|...|++++|+|++ +.++++++.||.|++||........ ......|...|
T Consensus 182 I~iwd~~~~~~~~~~~~----~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 257 (753)
T 3jro_A 182 VKIWKYNSDAQTYVLES----TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257 (753)
T ss_dssp EEEEEEETTTTEEEEEE----EECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC
T ss_pred EEEEeccCCcccceeee----eecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce
Confidence 99999987743322111 233567899999999933 8999999999999999987743211 11124478899
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 569 MFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 569 ~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++++|+|+|++|++++.||.|++|++..+.
T Consensus 258 ~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 258 WRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999999999999999999999999998654
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=6.9e-29 Score=275.95 Aligned_cols=260 Identities=17% Similarity=0.300 Sum_probs=198.4
Q ss_pred cccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
.|.+.|++|+|+|+|++||+|+.||.|+||++.+++....... .
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~---~--------------------------------- 69 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR---G--------------------------------- 69 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC---C---------------------------------
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc---c---------------------------------
Confidence 4789999999999999999999999999999987652110000 0
Q ss_pred CCceEEEeCCcceeccCccceEecCCC------------CCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCCeEE----
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHS------------SEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCL---- 422 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~------------~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~~~~---- 422 (755)
..+.+..+.+|. ..|.+++|+|++ .|++++.|++|++||+.++...
T Consensus 70 ---------------~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 134 (447)
T 3dw8_B 70 ---------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGY 134 (447)
T ss_dssp ---------------CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECC
T ss_pred ---------------ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCccee
Confidence 001244566787 889999999985 7999999999999999765442
Q ss_pred -----------------------------------EEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-CeEE
Q 004410 423 -----------------------------------RVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVV 464 (755)
Q Consensus 423 -----------------------------------~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~~~~ 464 (755)
+.+ .|...|++++|+| ++++|++| .|+.|++||+++ .+.+
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~ 212 (447)
T 3dw8_B 135 NLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSF 212 (447)
T ss_dssp SCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEE
T ss_pred cccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCcee
Confidence 122 4999999999999 99999999 799999999994 4444
Q ss_pred E--------eccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc--------cCCCCCeEEEE
Q 004410 465 D--------YTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK--------KLPGKRITGFQ 527 (755)
Q Consensus 465 ~--------~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~--------~~~~~~I~~v~ 527 (755)
. +..|...|++++|+|++ ++|++|+.||.|++||++++.........+..+. ..+...|++++
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (447)
T 3dw8_B 213 NIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVK 292 (447)
T ss_dssp EEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEE
T ss_pred eeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEE
Confidence 3 45788899999999998 9999999999999999998875211111111111 01123899999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCc-ceeeEEEeeeccCC---------------ceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGEN-VVGKFKASAFRVAG---------------SQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~---------------~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
|+| ++.+|++++. +.|+|||... ....... ..|.. .+..++|+|++++|++|+.||.|+|
T Consensus 293 ~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~i 368 (447)
T 3dw8_B 293 FSH-SGRYMMTRDY-LSVKVWDLNMENRPVETY--QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRM 368 (447)
T ss_dssp ECT-TSSEEEEEES-SEEEEEETTCCSSCSCCE--ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEE
T ss_pred ECC-CCCEEEEeeC-CeEEEEeCCCCcccccee--eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEE
Confidence 999 8999999999 9999999875 3322222 22321 1334999999999999999999999
Q ss_pred EEcCCCC
Q 004410 592 WNYSNQD 598 (755)
Q Consensus 592 Wd~~~~~ 598 (755)
||+.+++
T Consensus 369 wd~~~~~ 375 (447)
T 3dw8_B 369 FDRNTKR 375 (447)
T ss_dssp EETTTCC
T ss_pred EEcCCCc
Confidence 9998875
No 98
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-27 Score=251.83 Aligned_cols=244 Identities=16% Similarity=0.195 Sum_probs=203.9
Q ss_pred cccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 274 ~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
+...+++.+|.+.|++++| |++++|++|+.||.|+|||+.++..
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~----------------------------------- 51 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL----------------------------------- 51 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-----------------------------------
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-----------------------------------
Confidence 3455678999999999999 9999999999999999999876543
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---eEEEEE-ecC
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID---RCLRVF-SHN 428 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~---~~~~~~-~h~ 428 (755)
...+..|...|.+++|+|++ +|++++.|+.|++|++... +.+..+ .|.
T Consensus 52 ---------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~ 104 (313)
T 3odt_A 52 ---------------------------GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ 104 (313)
T ss_dssp ---------------------------EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCS
T ss_pred ---------------------------EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcc
Confidence 23345688999999999999 9999999999999998654 444444 499
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
..|.++.|+ +++|++++.||.|++|| .......+..|...+.+++|.| +++.|++++.||.|++||.. .....
T Consensus 105 ~~i~~~~~~---~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~ 178 (313)
T 3odt_A 105 GNVCSLSFQ---DGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKT 178 (313)
T ss_dssp SCEEEEEEE---TTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEE
T ss_pred cCEEEEEec---CCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEE
Confidence 999999994 57999999999999999 3333446778899999999999 99999999999999999943 22221
Q ss_pred eeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 508 NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
....+...|++++|+| ++. +++++.|+.|++||..+....... ..|...|++++|+|++ +|++++.||
T Consensus 179 -------~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~-~l~~~~~dg 246 (313)
T 3odt_A 179 -------FSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTY--EGHESFVYCIKLLPNG-DIVSCGEDR 246 (313)
T ss_dssp -------ECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTS-CEEEEETTS
T ss_pred -------EeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhh--hcCCceEEEEEEecCC-CEEEEecCC
Confidence 1223678899999999 666 999999999999999876655554 6788999999999999 699999999
Q ss_pred cEEEEEcCCCC
Q 004410 588 NIYIWNYSNQD 598 (755)
Q Consensus 588 ~I~iWd~~~~~ 598 (755)
.|++||+.+++
T Consensus 247 ~v~iwd~~~~~ 257 (313)
T 3odt_A 247 TVRIWSKENGS 257 (313)
T ss_dssp EEEEECTTTCC
T ss_pred EEEEEECCCCc
Confidence 99999999886
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.2e-28 Score=263.44 Aligned_cols=249 Identities=15% Similarity=0.126 Sum_probs=206.3
Q ss_pred eecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
..+|.+.|++++|+|++++|++++.||.|+||++.++...
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~---------------------------------------- 46 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---------------------------------------- 46 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------------------------------------
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------------------------
Confidence 4579999999999999999999999999999998765310
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeC-CCCeEEEEEe--cCCcEEEE
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQV-GIDRCLRVFS--HNNYVTSV 434 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl-~s~~~~~~~~--h~~~V~~i 434 (755)
.+...+.+|...|.+++|+|++ +|++++.|+.|++||+ .+++...... |...|+++
T Consensus 47 -------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l 107 (342)
T 1yfq_A 47 -------------------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRI 107 (342)
T ss_dssp -------------------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEE
T ss_pred -------------------ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEE
Confidence 0122344789999999999987 4899999999999999 8888766667 99999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEcCC---------CeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC-CeE
Q 004410 435 AFNPVDDNYFISGSIDGKVRIWEVRR---------CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD-NQL 504 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwdl~~---------~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~-~~~ 504 (755)
+|+| +++|++++.|+.|++||+++ ++.+....+...|.+++|+|++ +++++.+|.|++||+++ +..
T Consensus 108 ~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 108 CKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC
T ss_pred EeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc
Confidence 9998 88999999999999999987 6666555588999999999987 99999999999999998 543
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc------eeeEEEeeecc---------CCceE
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV------VGKFKASAFRV---------AGSQM 569 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~------~~~~~~~~~~~---------~~~v~ 569 (755)
.... ....+...|.+++|+|.++.++++++.|+.|++|+.... ...... ..| ...|.
T Consensus 184 ~~~~------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~ 255 (342)
T 1yfq_A 184 NGTI------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF--RCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp CCEE------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE--ECCCCCTTCCSSCCCEE
T ss_pred ccee------eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee--ecccccccccccceeEE
Confidence 2111 122356789999999844689999999999999998764 333333 334 34999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 570 FATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 570 ~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
+++|+|++++|++++.||.|++||+.+++.
T Consensus 256 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 999999999999999999999999998874
No 100
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.3e-28 Score=269.73 Aligned_cols=297 Identities=12% Similarity=0.027 Sum_probs=222.3
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcc--cccccc--------------------------------------
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--ELSSLY-------------------------------------- 275 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~--~~~~~~-------------------------------------- 275 (755)
..+.+++|+|+|++|+++ .++.|++|++..+.. .+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 456789999999966655 578999999765540 011000
Q ss_pred ----------cceeeecccccEEEEEEecCCCEE-EEEcCCCcEEEEEcc--CCeeeeeeecCCCCCceeEEeeCCCCce
Q 004410 276 ----------TGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQL 342 (755)
Q Consensus 276 ----------~~~~l~~H~~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 342 (755)
......+|.+.|++++|+|++++| |+++.||.|+||++. +++.+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------- 144 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------- 144 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-------------------
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-------------------
Confidence 011123566789999999999996 999999999999997 554322111
Q ss_pred eEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeE
Q 004410 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC 421 (755)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~ 421 (755)
...|...|.+++|+|++ +|++++.++.|++|++.+++.
T Consensus 145 -----------------------------------------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~ 183 (450)
T 2vdu_B 145 -----------------------------------------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPE 183 (450)
T ss_dssp -----------------------------------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCC
T ss_pred -----------------------------------------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccc
Confidence 12467889999999999 999999999999999988775
Q ss_pred EE----EE-ecCCcEEEEEEeeCC---CCEEEEEeCCCcEEEEEcCCCeEEE--eccCCcceEEEEEccCCCeEEEEeCC
Q 004410 422 LR----VF-SHNNYVTSVAFNPVD---DNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMT 491 (755)
Q Consensus 422 ~~----~~-~h~~~V~~i~fsp~d---~~~l~sgs~Dg~V~iwdl~~~~~~~--~~~~~~~V~~v~~spdg~~la~gs~d 491 (755)
.. .+ .|...|++++|+| + +++|++|+.|+.|++||+++++.+. ...|...|++++|+ ++++|++|+.|
T Consensus 184 ~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 184 EKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp SSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred ccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 53 33 5999999999999 8 8899999999999999999887663 45788999999999 99999999999
Q ss_pred CcEEEEECCCCeEeeeeeEEec-----------------ccccCCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEEC--C
Q 004410 492 GNCRFYDIKDNQLYQQNQICLQ-----------------GKKKLPGKRITGFQFSPSDPSKVIVTS-ADSLVRVLCG--E 551 (755)
Q Consensus 492 g~I~iwD~~~~~~~~~~~~~~~-----------------~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~--~ 551 (755)
+.|++||+.+++.+........ .........|..++|+| ++.+|++++ .|+.|+||++ .
T Consensus 262 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~ 340 (450)
T 2vdu_B 262 DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEK 340 (450)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSS
T ss_pred CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccC
Confidence 9999999999987665432100 00002345799999999 888999998 8999999999 3
Q ss_pred cc-eeeEEEeeeccCCceEEEEEecCCCEEEEEeC------CCcEEEEEcCCC
Q 004410 552 NV-VGKFKASAFRVAGSQMFATFTSDGKHVVSPSE------DSNIYIWNYSNQ 597 (755)
Q Consensus 552 ~~-~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~------Dg~I~iWd~~~~ 597 (755)
.. ..........+ ..|.+++|+|++.++++++. +..|.||.+...
T Consensus 341 ~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 341 QKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp STTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 32 11222222344 88999999996544444443 556899987654
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.8e-28 Score=265.35 Aligned_cols=282 Identities=13% Similarity=0.128 Sum_probs=211.8
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEE-EEEcCCCcE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTV 308 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L-aSgs~Dg~I 308 (755)
....|.+.+.+++|+|||++||+|+.++ ++||+....... +..+...+..+++.++++++ ++++.|++|
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI---------MSQEMRHLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE---------EEEECSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee---------eeeecCCeEEEEEcCCCCEEEEEECCccEE
Confidence 4466788999999999999999998775 789997643221 11222358888999998887 467788999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
+|||+.+++.+.. +. |.
T Consensus 84 ~iWd~~~~~~~~~--------------------------------------------------------------~~-~~ 100 (355)
T 3vu4_A 84 HIWDDVKKQDVSR--------------------------------------------------------------IK-VD 100 (355)
T ss_dssp EEEETTTTEEEEE--------------------------------------------------------------EE-CS
T ss_pred EEEECCCCcEEEE--------------------------------------------------------------EE-CC
Confidence 9999988765432 22 45
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCC-eEEEEEecCCcEEEEEEeeCCCCEEEE--EeCCCcEEEEEcCCCe---
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRCQ--- 462 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~-~~~~~~~h~~~V~~i~fsp~d~~~l~s--gs~Dg~V~iwdl~~~~--- 462 (755)
..|.+++|+++..++ ..|+.|++||+.++ +.+..+.. ....+++++ .+++. |+.||.|++||+.++.
T Consensus 101 ~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~ 173 (355)
T 3vu4_A 101 APVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITDDIR--FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSAT 173 (355)
T ss_dssp SCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSCCEE--EEEEEEEET---TEEEEEESSCTTCEEEEECCC-----
T ss_pred CceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEEecc--CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccc
Confidence 689999999875333 24789999999988 66655544 445566666 56665 6899999999999865
Q ss_pred --------------EEEeccCCcceEEEEEccCCCeEEEEeCCCc-EEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 463 --------------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGN-CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 463 --------------~~~~~~~~~~V~~v~~spdg~~la~gs~dg~-I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
...+..|...|++++|+|+|++|++|+.||+ |++||+++++.+..+. ...|...|++++
T Consensus 174 ~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~------~g~h~~~v~~~~ 247 (355)
T 3vu4_A 174 TQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR------RGLDRADVVDMK 247 (355)
T ss_dssp -------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE------CTTCCSCEEEEE
T ss_pred cccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE------cCCCCCcEEEEE
Confidence 4567889999999999999999999999998 9999999988765421 012678999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEe---------------------eeccCCceEEEEEecCCCEEEEEeCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS---------------------AFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~---------------------~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
|+| ++.+|++++.|++|+|||+.......... ..........++|++||++|++++.|
T Consensus 248 ~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~d 326 (355)
T 3vu4_A 248 WST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHT 326 (355)
T ss_dssp ECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTT
T ss_pred ECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCC
Confidence 999 89999999999999999986532110000 00112234678999999999999999
Q ss_pred CcEEEEEcCCCC
Q 004410 587 SNIYIWNYSNQD 598 (755)
Q Consensus 587 g~I~iWd~~~~~ 598 (755)
|.+++|++..++
T Consensus 327 g~~~~~~~~~~~ 338 (355)
T 3vu4_A 327 RMIETFKVVFDD 338 (355)
T ss_dssp TEEEEEEEEEET
T ss_pred CeEEEEEEEcCC
Confidence 999999997665
No 102
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.4e-27 Score=264.67 Aligned_cols=282 Identities=10% Similarity=0.052 Sum_probs=231.3
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
.+.+++|+|++.++++++.++.|++|+....... .......+.+|.+.|.+++|+|+++++++++.|+.|++||+.++
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE--EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe--eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 3557999998888888888999999998765432 11111245689999999999999999999999999999999776
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+.+ ..+..|...+.+++|
T Consensus 202 ~~~--------------------------------------------------------------~~~~~~~~~~~~~~~ 219 (433)
T 3bws_A 202 AYK--------------------------------------------------------------ATVDLTGKWSKILLY 219 (433)
T ss_dssp CEE--------------------------------------------------------------EEEECSSSSEEEEEE
T ss_pred eEE--------------------------------------------------------------EEEcCCCCCeeEEEE
Confidence 532 334467888999999
Q ss_pred cCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEe--------CCCcEEEEEcCCCeEEEe
Q 004410 397 SKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS--------IDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 397 s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs--------~Dg~V~iwdl~~~~~~~~ 466 (755)
+|++ .+ ++++.|+.|++||+.+++.+..+.+...+.+++|+| +++++++++ .|+.|++||+.+++.+..
T Consensus 220 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 220 DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT 298 (433)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred cCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence 9999 55 455589999999999999999888778899999999 898998888 588999999999988877
Q ss_pred ccCCcceEEEEEccCCCeE-EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC----
Q 004410 467 TDIREIVSAVCYCPDGKGG-IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA---- 541 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~l-a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~---- 541 (755)
..+...+.+++|+|+++.+ ++++.++.|++||+.+++...... +...+.+++|+| ++.++++++.
T Consensus 299 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---------~~~~~~~~~~s~-dg~~l~~~~~~~~~ 368 (433)
T 3bws_A 299 IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---------VFDKPNTIALSP-DGKYLYVSCRGPNH 368 (433)
T ss_dssp EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---------CSSSEEEEEECT-TSSEEEEEECCCCC
T ss_pred ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---------CCCCCCeEEEcC-CCCEEEEEecCCCc
Confidence 7777789999999999765 556889999999999888764321 346789999999 8888888776
Q ss_pred -----------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC-CCcEEEEEcCC
Q 004410 542 -----------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE-DSNIYIWNYSN 596 (755)
Q Consensus 542 -----------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~-Dg~I~iWd~~~ 596 (755)
||.|++||..+....... .....+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 369 ~~~~~~~~g~~dg~v~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 369 PTEGYLKKGLVLGKVYVIDTTTDTVKEFW---EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTTCTTSCCSSCCEEEEEETTTTEEEEEE---ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cccccccccccceEEEEEECCCCcEEEEe---cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 579999999876544443 23567899999999999998875 99999999863
No 103
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=4.6e-28 Score=260.88 Aligned_cols=252 Identities=17% Similarity=0.278 Sum_probs=203.4
Q ss_pred cceeeecccccEEEEEEecC---CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcce
Q 004410 276 TGQEFLAHEGSILTMKFSLD---GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI 352 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspd---g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 352 (755)
..+.+.+|.+.|++|+|+|+ |++|++|+.||.|+|||+.+...
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------------------------- 76 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------------------------- 76 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------------------------------
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------------------------------
Confidence 44567899999999999999 69999999999999999976221
Q ss_pred eeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcE
Q 004410 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYV 431 (755)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V 431 (755)
.....+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++....|...|
T Consensus 77 --------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v 130 (368)
T 3mmy_A 77 --------------------------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPV 130 (368)
T ss_dssp --------------------------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred --------------------------eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCce
Confidence 0124466799999999999999 9999999999999999999999988999999
Q ss_pred EEEEE--eeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 432 TSVAF--NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 432 ~~i~f--sp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
++++| +| ++++|++++.||.|++||+++++.+........+.++.+. +..+++++.++.+++|++.........
T Consensus 131 ~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~- 206 (368)
T 3mmy_A 131 KTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRR- 206 (368)
T ss_dssp EEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEE-
T ss_pred EEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhh-
Confidence 99999 77 8889999999999999999998877655555667666665 458999999999999999876543221
Q ss_pred EEecccccCCCCCeEEEEEcCCCCC----EEEEEECCCcEEEEECCcce---eeEEEeeeccCC------------ceEE
Q 004410 510 ICLQGKKKLPGKRITGFQFSPSDPS----KVIVTSADSLVRVLCGENVV---GKFKASAFRVAG------------SQMF 570 (755)
Q Consensus 510 ~~~~~~~~~~~~~I~~v~fsp~d~~----~l~s~s~Dg~I~iwd~~~~~---~~~~~~~~~~~~------------~v~~ 570 (755)
........+..+.+.+ +.. .+++++.|+.|++|+..... ..... ..|.. .|++
T Consensus 207 -----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~ 278 (368)
T 3mmy_A 207 -----IESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF--KCHRSNGTNTSAPQDIYAVNG 278 (368)
T ss_dssp -----CCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE--ECSEEC----CCCEEECCEEE
T ss_pred -----ccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccceee--eeeecccccccccccccceEE
Confidence 1222334556666655 333 39999999999999988652 22222 33333 7999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 571 ATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 571 l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
++|+|++++|++++.||.|+|||+.+++.
T Consensus 279 ~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 279 IAFHPVHGTLATVGSDGRFSFWDKDARTK 307 (368)
T ss_dssp EEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred EEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence 99999999999999999999999998763
No 104
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.5e-28 Score=267.47 Aligned_cols=246 Identities=20% Similarity=0.283 Sum_probs=208.5
Q ss_pred eeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 234 ~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
|...+.+++|+|++++|++|+.||.|+||++.... ..+.+.+|.+.|.+++| ++++|++++.||.|++||+
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~ 203 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-------KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDV 203 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-------EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEec
Confidence 34567789999999999999999999999986543 33567799999999999 4679999999999999998
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.... ..+..+.+|...|.+
T Consensus 204 ~~~~-------------------------------------------------------------~~~~~~~~~~~~v~~ 222 (401)
T 4aez_A 204 RIAN-------------------------------------------------------------HQIGTLQGHSSEVCG 222 (401)
T ss_dssp TSSS-------------------------------------------------------------CEEEEEECCSSCEEE
T ss_pred ccCc-------------------------------------------------------------ceeeEEcCCCCCeeE
Confidence 6432 123456789999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEe--CCCcEEEEEcCCCeEEEeccC
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYTDI 469 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs--~Dg~V~iwdl~~~~~~~~~~~ 469 (755)
++|+|++ +|++++.|+.|++||+.+++++..+ .|...|.+++|+|....++++++ .|+.|++||+.+++.+....+
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~ 302 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA 302 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence 9999999 9999999999999999999998888 49999999999995556777765 799999999999998877778
Q ss_pred CcceEEEEEccCCCeEEEE--eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 470 REIVSAVCYCPDGKGGIVG--TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~g--s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
...|.+++|+|+++.|+++ +.||.|++||+.++....... ...|...|++++|+| ++.+|++++.|+.|++
T Consensus 303 ~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~------~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 303 GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD------IPAHDTRVLYSALSP-DGRILSTAASDENLKF 375 (401)
T ss_dssp SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE------EECCSSCCCEEEECT-TSSEEEEECTTSEEEE
T ss_pred CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE------ecCCCCCEEEEEECC-CCCEEEEEeCCCcEEE
Confidence 8899999999999999994 489999999999876654322 234678899999999 8999999999999999
Q ss_pred EECCcceee
Q 004410 548 LCGENVVGK 556 (755)
Q Consensus 548 wd~~~~~~~ 556 (755)
|++.+....
T Consensus 376 w~~~~~~~~ 384 (401)
T 4aez_A 376 WRVYDGDHV 384 (401)
T ss_dssp EECCC----
T ss_pred EECCCCccc
Confidence 998875443
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.9e-29 Score=274.64 Aligned_cols=262 Identities=10% Similarity=0.061 Sum_probs=208.5
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
.+.+.+++|+|||+++|+++.|++|+ +... .+.+.+|...|++++|+|+| .++.+.+|+.+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~----------~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~ 75 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKY----------AKDINCNSKNLFHVKEFPLE-------FENKLDFELAQ 75 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECC----------CSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCC
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccc----------cceecCCCccEEEEEECCCC-------CcceEEEEeCC
Confidence 46788899999999999999999999 5221 13457899999999999999 45555555432
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
... +.. ..|...|.++
T Consensus 76 ~~~---------------------------------------------------------------~~~-~~~~~~V~~v 91 (588)
T 2j04_A 76 QNG---------------------------------------------------------------LLN-SQPVCYPRVC 91 (588)
T ss_dssp SSC---------------------------------------------------------------SST-TSCSCCEEEE
T ss_pred Cce---------------------------------------------------------------Eee-cCCCCcEEEE
Confidence 111 011 1457889999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCC-----cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE-----
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNN-----YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV----- 463 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~-----~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~----- 463 (755)
+|+|+| .|++++.||+|++||..+ ++..+.|.. .|.+++|+| ++++|++|+.||+|+|||+.++..
T Consensus 92 awSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~ 168 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEF 168 (588)
T ss_dssp EECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccc
Confidence 999999 999999999999999654 666666544 499999999 999999999999999999998742
Q ss_pred ---EEe----ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 464 ---VDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 464 ---~~~----~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
..+ .+|...|.+++|+||| +++++.|+.|++||+.++....... .+ ...|...|.+++|+ +..|
T Consensus 169 i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~-tL---~~~h~~~V~svaFs---g~~L 239 (588)
T 2j04_A 169 YFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSR-MI---QNASRRKITDLKIV---DYKV 239 (588)
T ss_dssp EEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEE-EE---ECCCSSCCCCEEEE---TTEE
T ss_pred eeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccccee-ee---cccccCcEEEEEEE---CCEE
Confidence 233 5677899999999999 8889999999999998877321000 01 12356789999998 3788
Q ss_pred EEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEE--ecCCCEEEEEeCCCcEEEEEcC
Q 004410 537 IVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATF--TSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~f--spdg~~L~sgs~Dg~I~iWd~~ 595 (755)
++++ ++.|++||..+....... .+|...+..++| +||+..|+++++||. ++|.++
T Consensus 240 ASa~-~~tIkLWd~~~~~~~~~~--~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 240 VLTC-PGYVHKIDLKNYSISSLK--TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEC-SSEEEEEETTTTEEEEEE--CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEe-CCeEEEEECCCCeEEEEE--cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 8887 699999998876553332 479999999999 999999999999999 999974
No 106
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.2e-28 Score=270.75 Aligned_cols=253 Identities=17% Similarity=0.194 Sum_probs=176.0
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
|.+.+....+++++.+||+|+.|++|+|||+.+++....
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~----------------------------------------- 126 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ----------------------------------------- 126 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEE-----------------------------------------
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee-----------------------------------------
Confidence 333344444455677899999999999999987754321
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcC--------CC-eEEEEeCCCcEEEEeCCCCeEEE-EEecCCcEE
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK--------NG-FLLSSSADKTVRLWQVGIDRCLR-VFSHNNYVT 432 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~--------~~-~L~s~s~Dg~V~iWdl~s~~~~~-~~~h~~~V~ 432 (755)
.++..+.+|.+.|.+++|+| ++ +|++++.|++|+|||+.++.++. .+.|...|.
T Consensus 127 ----------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~ 190 (393)
T 4gq1_A 127 ----------------HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI 190 (393)
T ss_dssp ----------------EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE
T ss_pred ----------------eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE
Confidence 11334679999999999997 66 99999999999999998776654 457999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE--------------------------eccCCcceEEEEEc-cCCCeE
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--------------------------YTDIREIVSAVCYC-PDGKGG 485 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~--------------------------~~~~~~~V~~v~~s-pdg~~l 485 (755)
+++|+|.+.++|++|+.|++|++||+++++... ...|...+.++.|. |+|+.|
T Consensus 191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 999999444689999999999999998765331 13456678888887 799999
Q ss_pred EEEeCCCcEEEEECCCCeEeeeeeEEecc----------cccCCCCCeEEEEEcCC-CCCEEEEEECCCcEEEEECCcce
Q 004410 486 IVGTMTGNCRFYDIKDNQLYQQNQICLQG----------KKKLPGKRITGFQFSPS-DPSKVIVTSADSLVRVLCGENVV 554 (755)
Q Consensus 486 a~gs~dg~I~iwD~~~~~~~~~~~~~~~~----------~~~~~~~~I~~v~fsp~-d~~~l~s~s~Dg~I~iwd~~~~~ 554 (755)
++++.|+++++||+..++....+...... .............++|. ++.++++|+.|+.|+|||..+..
T Consensus 271 ~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred EEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 99999999999999877654432211000 00011122223344443 44466777889999999998766
Q ss_pred eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 555 GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 555 ~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
..... ..|...|.+++|+|||++||+++.|| |.+|.+.
T Consensus 351 ~~~~~--~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 351 SNSIP--IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCEEE--EECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEe--cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 55544 56888999999999999999998765 6666653
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-28 Score=264.75 Aligned_cols=278 Identities=10% Similarity=0.051 Sum_probs=212.5
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
..+.+++.+|++|+.||.|+||++..+... ..+. ...|.++.|+|+ |++++.|++|++|+......+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-------~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI-------TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCE-------EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEE-------EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence 455678899999999999999998754421 1222 467888999998 9999999999999975422111
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE-ecCCCCCEEEEEEcC-
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDLSWSK- 398 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gh~~~V~~l~~s~- 398 (755)
.+. . ...+.. ..+|...|.+++|+|
T Consensus 110 ~~~-------------------------~----------------------------~~~~~~~~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 110 DSK-------------------------T----------------------------NKVLREIEVDSANEIIYMYGHNE 136 (343)
T ss_dssp ETT-------------------------T----------------------------CCEEEEEECCCSSCEEEEECCC-
T ss_pred ecC-------------------------C----------------------------cceeEEeecCCCCCEEEEEcCCC
Confidence 100 0 011122 236778999999999
Q ss_pred -CC-eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--Eecc-CCc
Q 004410 399 -NG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTD-IRE 471 (755)
Q Consensus 399 -~~-~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~-~~~ 471 (755)
++ +|++++.|++|++||+.+++++..+ .+...|++++|+| ++.+|++|+.||.|++||+++++.+ .+.. |..
T Consensus 137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~ 215 (343)
T 3lrv_A 137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA 215 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC
Confidence 88 9999999999999999999997776 3566899999999 9999999999999999999988765 5666 899
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCe--EEEEEcCCCCCEEEEEEC-CCcEEEE
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI--TGFQFSPSDPSKVIVTSA-DSLVRVL 548 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I--~~v~fsp~d~~~l~s~s~-Dg~I~iw 548 (755)
.|++++|+|+|.+|++++ ++.|++||+++.+....... + ..+...+ .+++|+| ++.+|++++. |+.|+||
T Consensus 216 ~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 216 KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT-Y----TIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIY 288 (343)
T ss_dssp CEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC-C----BC-----CCEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc-c----ccccccccceEEEECC-CCCEEEEecCCCCcEEEE
Confidence 999999999999999999 55999999998765432211 0 0011222 5799999 8999999998 9999999
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEec---CCCEEEEEeCCCcEEEEEcCCC
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTS---DGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fsp---dg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+.......+.. .++..++|.+ +++.|++++.||.+.++-....
T Consensus 289 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 289 KFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 98665444332 4567788888 8999999999999999865443
No 108
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=1.3e-26 Score=258.51 Aligned_cols=279 Identities=19% Similarity=0.328 Sum_probs=229.0
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+.+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+..+..+...+.++.+.. ...
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~------------------~~l 172 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD------------------NII 172 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET------------------TEE
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC------------------CEE
Confidence 457889887533 2555799999999999999999999998888876666555554431 134
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~f 436 (755)
+.++.++.+.+|+... .+.+..+.+|...|.+++|++ +.|++++.|++|++||+.+++++..+. |...|.+++|
T Consensus 173 ~s~~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 173 ISGSTDRTLKVWNAET----GECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp EEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECCc----CcEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence 5667788888887654 345778899999999999963 389999999999999999999988884 8999999998
Q ss_pred eeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc
Q 004410 437 NPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
++++|++|+.||.|++||+++++.+ .+..|...|.+++| ++.++++|+.||.|++||+++++.+...
T Consensus 248 ---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~------- 315 (445)
T 2ovr_B 248 ---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL------- 315 (445)
T ss_dssp ---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE-------
T ss_pred ---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE-------
Confidence 5789999999999999999998877 56678899999999 8899999999999999999998876532
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee-eccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA-FRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
..+...+.++.+. +.++++++.|+.|++||..+......... ..|...|++++|+ +++|++|+.||.|++||+
T Consensus 316 -~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 316 -TGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp -CCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred -cCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 2356678888875 47999999999999999987655444311 1378899999995 689999999999999999
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.+++
T Consensus 390 ~~~~ 393 (445)
T 2ovr_B 390 KTGE 393 (445)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 8876
No 109
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=2.4e-27 Score=262.47 Aligned_cols=244 Identities=22% Similarity=0.335 Sum_probs=207.6
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
+|.+.|.+++|+|+|++||+|+.||.|+||++.... ..+.+.+|...|.++.|+ +.+|++|+.|+.+++||
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-------~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-------RLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHD 215 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-------EEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEee
Confidence 445668899999999999999999999999987543 335678999999998875 67999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
..... ..+..+.+|...+.
T Consensus 216 ~~~~~-------------------------------------------------------------~~~~~~~~h~~~~~ 234 (420)
T 4gga_A 216 VRVAE-------------------------------------------------------------HHVATLSGHSQEVC 234 (420)
T ss_dssp TTSSS-------------------------------------------------------------CEEEEEECCSSCEE
T ss_pred ecccc-------------------------------------------------------------eeeEEeccccccee
Confidence 86542 12455678999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeE----EEE-EecCCcEEEEEEeeCCCCEEEEE--eCCCcEEEEEcCCCeEE
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRC----LRV-FSHNNYVTSVAFNPVDDNYFISG--SIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~----~~~-~~h~~~V~~i~fsp~d~~~l~sg--s~Dg~V~iwdl~~~~~~ 464 (755)
.+.|++++ ++++++.|+.|++|++.+++. +.. ..|...|.+++|+|.+..+++++ +.|++|++||+.++++.
T Consensus 235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred eeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence 99999999 999999999999999987653 223 35899999999999777777764 57999999999999999
Q ss_pred EeccCCcceEEEEEccCCCeEEEEe--CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGT--MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs--~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
........+.++.|+|+++.+++++ .||.|+|||+.+++.+.. ...|...|++++|+| ++.+|++++.|
T Consensus 315 ~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~--------l~gH~~~V~~l~~sp-dg~~l~S~s~D 385 (420)
T 4gga_A 315 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--------LKGHTSRVLSLTMSP-DGATVASAAAD 385 (420)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT-TSSCEEEEETT
T ss_pred eeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEE--------EcCCCCCEEEEEEcC-CCCEEEEEecC
Confidence 8777888999999999999998866 689999999999887654 234778999999999 89999999999
Q ss_pred CcEEEEECCccee
Q 004410 543 SLVRVLCGENVVG 555 (755)
Q Consensus 543 g~I~iwd~~~~~~ 555 (755)
++|+|||+.+...
T Consensus 386 ~tvriWdv~~~~~ 398 (420)
T 4gga_A 386 ETLRLWRCFELDP 398 (420)
T ss_dssp TEEEEECCSCSSC
T ss_pred CeEEEEECCCCCc
Confidence 9999999876443
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2.6e-26 Score=250.78 Aligned_cols=266 Identities=14% Similarity=0.146 Sum_probs=215.0
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEE-EEEcCCCcEEEEEccCCeeeeeeecCC
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQD 326 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~~~~~~~~~~ 326 (755)
.++++++.++.|++|+..... ..+.+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~-------~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~----- 69 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK-------VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT----- 69 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-------EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-----
T ss_pred EEEEEcCCCCEEEEEECCCCe-------EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-----
Confidence 467889999999999987543 223455554 58999999999977 6777999999999988764322
Q ss_pred CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-E
Q 004410 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-S 404 (755)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s 404 (755)
+..| ..+.+++|+|++ +|+ +
T Consensus 70 ---------------------------------------------------------~~~~-~~v~~~~~spdg~~l~~~ 91 (391)
T 1l0q_A 70 ---------------------------------------------------------VPAG-SSPQGVAVSPDGKQVYVT 91 (391)
T ss_dssp ---------------------------------------------------------EECS-SSEEEEEECTTSSEEEEE
T ss_pred ---------------------------------------------------------EECC-CCccceEECCCCCEEEEE
Confidence 2222 379999999999 564 5
Q ss_pred EeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCC
Q 004410 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483 (755)
Q Consensus 405 ~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l-~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~ 483 (755)
++.++.|++||+.+++.+..+.+...+.+++|+| ++++| ++++.|+.|++||+.+++.+........+.+++|+|+++
T Consensus 92 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~ 170 (391)
T 1l0q_A 92 NMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGT 170 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSS
T ss_pred ECCCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCC
Confidence 5567999999999999999998888899999999 88866 788889999999999998887666667789999999999
Q ss_pred eE-EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE---CCCcEEEEECCcceeeEEE
Q 004410 484 GG-IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS---ADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 484 ~l-a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s---~Dg~I~iwd~~~~~~~~~~ 559 (755)
.| ++++.++.|++||+.+++...... +...+.+++|+| ++.+|++++ .++.|++||..+.......
T Consensus 171 ~l~~~~~~~~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 171 KVYVANFDSMSISVIDTVTNSVIDTVK---------VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE---------CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEe---------cCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence 88 567788999999999987664322 245789999999 788888877 7999999999876544333
Q ss_pred eeeccCCceEEEEEecCCCEE-EEEeCCCcEEEEEcCCCC
Q 004410 560 SAFRVAGSQMFATFTSDGKHV-VSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L-~sgs~Dg~I~iWd~~~~~ 598 (755)
. ....+.+++|+|+|++| ++++.|+.|++||+.+++
T Consensus 241 --~-~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 241 --P-VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp --E-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred --e-cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 2 23457899999999988 677889999999999876
No 111
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=1e-27 Score=260.60 Aligned_cols=228 Identities=16% Similarity=0.169 Sum_probs=179.9
Q ss_pred EeeCCCeEEEEECCCCcccccccccc--eeeecccccEEEEEEecCCCEEEEE--cCCCcEEEEEccCCeeeeeeecCCC
Q 004410 252 LGQRMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASG--GEDGTVRVWKVIEHERLDGFDVQDT 327 (755)
Q Consensus 252 sgs~dg~V~Vw~~~~~~~~~~~~~~~--~~l~~H~~~V~~l~fspdg~~LaSg--s~Dg~I~vWdv~~~~~~~~~~~~~~ 327 (755)
+|+.|+.+++|++......+...... .....+...+.+++|||||++||+| +.|++|+|||+.+++.+.
T Consensus 99 s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~------- 171 (365)
T 4h5i_A 99 QGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF------- 171 (365)
T ss_dssp HTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE-------
T ss_pred EecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE-------
Confidence 34568889999876544333222111 1223466779999999999998755 478999999998876432
Q ss_pred CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe
Q 004410 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (755)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s 406 (755)
.+ .|...|.+++|+|++ +|++++
T Consensus 172 -------------------------------------------------------~~-~~~~~V~~v~fspdg~~l~s~s 195 (365)
T 4h5i_A 172 -------------------------------------------------------EI-ETRGEVKDLHFSTDGKVVAYIT 195 (365)
T ss_dssp -------------------------------------------------------EE-ECSSCCCEEEECTTSSEEEEEC
T ss_pred -------------------------------------------------------Ee-CCCCceEEEEEccCCceEEecc
Confidence 22 367789999999999 677766
Q ss_pred CCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeCCCCEEEEEeCCC----cEEEEEcCCCeEE-----EeccCCcceE
Q 004410 407 ADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVV-----DYTDIREIVS 474 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~d~~~l~sgs~Dg----~V~iwdl~~~~~~-----~~~~~~~~V~ 474 (755)
++.+++|+..+++.+... .|...|.+++|+| ++.++++++.|+ .+++|++...... .+..|...|+
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~ 273 (365)
T 4h5i_A 196 -GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT 273 (365)
T ss_dssp -SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE
T ss_pred -ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeE
Confidence 556777777777765543 3888999999999 999999999887 6889998876532 4667888999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 475 AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 475 ~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
+++|+|||++||+|+.|++|+|||+.+++.+..+ ...|...|++++|+| ++++|++++.|++|+||++..
T Consensus 274 ~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~-------~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 274 SMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF-------KQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-------TTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCT
T ss_pred eEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe-------cCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999999999999999876431 345788999999999 999999999999999999864
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=7e-27 Score=256.97 Aligned_cols=245 Identities=17% Similarity=0.237 Sum_probs=200.7
Q ss_pred EEEEEEecCCCE-EEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 287 ILTMKFSLDGQY-LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 287 V~~l~fspdg~~-LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
...++++|+... +++++.||.|+||++......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~---------------------------------------------- 70 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV---------------------------------------------- 70 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC----------------------------------------------
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC----------------------------------------------
Confidence 345788887654 446789999999998654321
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcC-CC-eEEEEeCCCcEEEEeCCCC-------eEEEEE-ecCCcEEEEE
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGID-------RCLRVF-SHNNYVTSVA 435 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~-------~~~~~~-~h~~~V~~i~ 435 (755)
...+..+.+|.+.|.+++|+| ++ +|++++.|++|+|||+.++ +++..+ .|...|++++
T Consensus 71 ------------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 138 (402)
T 2aq5_A 71 ------------DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138 (402)
T ss_dssp ------------CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEE
T ss_pred ------------CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEE
Confidence 012345678999999999999 77 9999999999999999987 455666 4999999999
Q ss_pred EeeCCC-CEEEEEeCCCcEEEEEcCCCeEEE-e--ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 436 FNPVDD-NYFISGSIDGKVRIWEVRRCQVVD-Y--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 436 fsp~d~-~~l~sgs~Dg~V~iwdl~~~~~~~-~--~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
|+| ++ ++|++++.||.|++||+.+++.+. + ..|...|++++|+|++++|++++.||.|++||+++++.+....
T Consensus 139 ~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-- 215 (402)
T 2aq5_A 139 WHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD-- 215 (402)
T ss_dssp ECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred ECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--
Confidence 999 65 799999999999999999998874 4 5788999999999999999999999999999999988765321
Q ss_pred ecccccCCCC-CeEEEEEcCCCCCEEEEE---ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE-EeCC
Q 004410 512 LQGKKKLPGK-RITGFQFSPSDPSKVIVT---SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS-PSED 586 (755)
Q Consensus 512 ~~~~~~~~~~-~I~~v~fsp~d~~~l~s~---s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s-gs~D 586 (755)
..|.. .+..+.|+| ++.+|+++ +.|+.|++||..+...........+...+..++|+|++++|++ ++.|
T Consensus 216 -----~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 216 -----RPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp -----CSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred -----cCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 22333 489999999 88899998 7999999999987654333333567788999999999999975 5579
Q ss_pred CcEEEEEcCCCC
Q 004410 587 SNIYIWNYSNQD 598 (755)
Q Consensus 587 g~I~iWd~~~~~ 598 (755)
|.|++||+.+++
T Consensus 290 g~i~i~d~~~~~ 301 (402)
T 2aq5_A 290 SSIRYFEITSEA 301 (402)
T ss_dssp SCEEEEEECSST
T ss_pred CeEEEEEecCCC
Confidence 999999998876
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=6.8e-27 Score=259.81 Aligned_cols=269 Identities=16% Similarity=0.251 Sum_probs=208.3
Q ss_pred ceeeeeccCcceeecCC-CCeeEEeeCCCeEEEEECCCCcccc---cccccceeeecccccEEEEEEecCCC-EEEEEcC
Q 004410 230 AMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSREL---SSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGE 304 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~---~~~~~~~~l~~H~~~V~~l~fspdg~-~LaSgs~ 304 (755)
....|...+.+++|+|+ +.+||+++.+|.|+||++....... ........+.+|.+.|.+|+|+|++. +|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 34567788999999998 6799999999999999986521111 11334467889999999999999998 9999999
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
||.|+||++.++...... ..+...+
T Consensus 203 dg~i~vwd~~~~~~~~~~-------------------------------------------------------~~~~~~~ 227 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRV-------------------------------------------------------IDAKNIF 227 (430)
T ss_dssp TSCEEEEETTSCCBGGGE-------------------------------------------------------EECSEEE
T ss_pred CCeEEEEeCCCCCCCCce-------------------------------------------------------eccceee
Confidence 999999999764311000 0123456
Q ss_pred cCCCCCEEEEEEcCC-C-eEEEEeCCCcEEEEeCCCC---eEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 385 QGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGID---RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWdl~s~---~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
.+|...|.+++|+|+ + .|++++.|+.|++||++++ +.+..+ .|...|++++|+|....+|++|+.||.|++||+
T Consensus 228 ~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~ 307 (430)
T 2xyi_A 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307 (430)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeC
Confidence 789999999999994 4 8899999999999999977 455555 599999999999943347999999999999999
Q ss_pred CCC-e-EEEeccCCcceEEEEEccCCC-eEEEEeCCCcEEEEECCCCeEeeee------eEEecccccCCCCCeEEEEEc
Q 004410 459 RRC-Q-VVDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQN------QICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 459 ~~~-~-~~~~~~~~~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~~~~~~~~------~~~~~~~~~~~~~~I~~v~fs 529 (755)
++. . +..+..|...|++++|+|+++ +|++++.||.|++||+......... ...+......|...|++++|+
T Consensus 308 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 387 (430)
T 2xyi_A 308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387 (430)
T ss_dssp TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC
T ss_pred CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC
Confidence 973 3 346677899999999999985 6899999999999999873211100 000011133467789999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCcc
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
|++..+|++++.|+.|+||+....
T Consensus 388 p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 388 PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCCEEEEEECCCCEEEeEcccc
Confidence 944449999999999999997653
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=284.64 Aligned_cols=255 Identities=18% Similarity=0.226 Sum_probs=209.3
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC--CCEEEEEcCCC
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDG 306 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd--g~~LaSgs~Dg 306 (755)
..+.+|.+.+.+++|+|++++|++|+.||.|+||++.... ......+.+|.+.|++++|+|+ +++|++|+.||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 3567888999999999999999999999999999976332 2234567899999999999998 99999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|++||+.+++.. .+..+.+
T Consensus 78 ~I~vwd~~~~~~~------------------------------------------------------------~~~~~~~ 97 (753)
T 3jro_A 78 KVLIWKEENGRWS------------------------------------------------------------QIAVHAV 97 (753)
T ss_dssp CEEEEEEETTEEE------------------------------------------------------------EEEEECC
T ss_pred eEEEEECCCCccc------------------------------------------------------------ccccccC
Confidence 9999998776421 1345677
Q ss_pred CCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCeE---EEEEecCCcEEEEEEeeC------------CCCEEEEEe
Q 004410 387 HSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPV------------DDNYFISGS 448 (755)
Q Consensus 387 h~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~~---~~~~~h~~~V~~i~fsp~------------d~~~l~sgs 448 (755)
|...|.+++|+|+ + .|++++.||+|++||+.++.. .....|...|++++|+|. ++.+|++|+
T Consensus 98 h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs 177 (753)
T 3jro_A 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177 (753)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE
T ss_pred CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE
Confidence 9999999999998 7 999999999999999987732 333359999999999994 488999999
Q ss_pred CCCcEEEEEcCCC----eEE-EeccCCcceEEEEEccC---CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 449 IDGKVRIWEVRRC----QVV-DYTDIREIVSAVCYCPD---GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 449 ~Dg~V~iwdl~~~----~~~-~~~~~~~~V~~v~~spd---g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
.||.|++||++++ ... .+..|...|++++|+|+ +++|++|+.||.|++||+.++....... ......+.
T Consensus 178 ~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~~~~~~~ 254 (753)
T 3jro_A 178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT---LLKEEKFP 254 (753)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC---BSSSSCCS
T ss_pred CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE---EeccCCCC
Confidence 9999999999876 333 56788999999999999 8999999999999999999864221111 11123467
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
..|++++|+| ++.++++++.||.|++|+...
T Consensus 255 ~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 255 DVLWRASWSL-SGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SCCCCEEECT-TTCCEEEECSSSCEECCBCCS
T ss_pred CceEEEEEcC-CCCEEEEEcCCCEEEEEecCC
Confidence 7899999999 889999999999999999773
No 115
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=9.4e-26 Score=246.64 Aligned_cols=287 Identities=17% Similarity=0.240 Sum_probs=213.5
Q ss_pred CCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEE
Q 004410 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYF 334 (755)
Q Consensus 256 dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~ 334 (755)
++.++||+.... ...+.+.+|.+.|++|+|+| ++++||+|+.||.|+|||+.++.....+.....
T Consensus 22 ~~~~~v~~~~~~-------~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------- 87 (408)
T 4a11_B 22 ESTRRVLGLELN-------KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV------- 87 (408)
T ss_dssp HHHHHHHTEEEC-------TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE-------
T ss_pred cCcceeeccccC-------cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc-------
Confidence 344666664322 22345678999999999999 999999999999999999987754322210000
Q ss_pred eeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC-CC-eEEEEeCCCcEE
Q 004410 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVR 412 (755)
Q Consensus 335 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~L~s~s~Dg~V~ 412 (755)
.........+|...|.+++|+| ++ +|++++.|+.|+
T Consensus 88 ------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 88 ------------------------------------------CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125 (408)
T ss_dssp ------------------------------------------EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred ------------------------------------------ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence 0000112346999999999999 55 999999999999
Q ss_pred EEeCCCCeEEEEEecCCcEEEEEEeeC--CCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCe-EEEE
Q 004410 413 LWQVGIDRCLRVFSHNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKG-GIVG 488 (755)
Q Consensus 413 iWdl~s~~~~~~~~h~~~V~~i~fsp~--d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~-la~g 488 (755)
+||+.+++.+..+.+...+.++.++|. ++.++++++.|+.|++||+++++.+ .+..|...|++++|+|+++. |++|
T Consensus 126 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~ 205 (408)
T 4a11_B 126 VWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATA 205 (408)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEE
T ss_pred EeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEE
Confidence 999999999999999999999999983 2349999999999999999988765 56678899999999999985 8899
Q ss_pred eCCCcEEEEECCCCeEeee-ee-------EEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe
Q 004410 489 TMTGNCRFYDIKDNQLYQQ-NQ-------ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 489 s~dg~I~iwD~~~~~~~~~-~~-------~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 560 (755)
+.||.|++||++++..... .. .........+...|++++|+| ++.+|++++.|+.|++||..+........
T Consensus 206 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 284 (408)
T 4a11_B 206 SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNY 284 (408)
T ss_dssp ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCCCCC
T ss_pred cCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCccceecc
Confidence 9999999999987652211 10 001111245778899999999 89999999999999999988754432221
Q ss_pred ee---ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 561 AF---RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 561 ~~---~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.. .....+........+..+++++.|+.|++||+.+++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 326 (408)
T 4a11_B 285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ 326 (408)
T ss_dssp CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred ccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence 00 1111222222234456677778899999999988763
No 116
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=1.6e-25 Score=248.97 Aligned_cols=232 Identities=21% Similarity=0.317 Sum_probs=200.1
Q ss_pred ecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.+|...|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~------------------------------------------ 165 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC------------------------------------------ 165 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE------------------------------------------
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE------------------------------------------
Confidence 357778999887 799999999999999999877653
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEee
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP 438 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp 438 (755)
+..+.+|...|.+++| ++ .|++|+.||+|++||+.+++++..+. |...|.+++|++
T Consensus 166 --------------------~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 223 (435)
T 1p22_A 166 --------------------KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN 223 (435)
T ss_dssp --------------------EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT
T ss_pred --------------------EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC
Confidence 3445689999999999 45 99999999999999999999998884 899999999964
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEE----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVV----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
++|++|+.||.|++||+.++... ....|...|.+++| ++++|++|+.||.|++||+++++.+...
T Consensus 224 ---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~------ 292 (435)
T 1p22_A 224 ---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL------ 292 (435)
T ss_dssp ---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE------
T ss_pred ---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE------
Confidence 59999999999999999876542 46678899999999 8899999999999999999998876542
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
..|...|.++.+. +.++++++.|+.|++||..+....... ..|...|.+++| ++.+|++|+.||.|++||+
T Consensus 293 --~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 293 --NGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVL--EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp --ECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred --cCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEE--eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence 2466789999994 489999999999999999886555544 678899999998 7899999999999999999
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.++.
T Consensus 364 ~~~~ 367 (435)
T 1p22_A 364 VAAL 367 (435)
T ss_dssp HHHT
T ss_pred CCCC
Confidence 7665
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-25 Score=251.35 Aligned_cols=289 Identities=10% Similarity=-0.014 Sum_probs=203.0
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe---eeeeeecCCCCCceeEEeeC--CCCceeEEeecCcceeeeeeee
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE---RLDGFDVQDTDPSCLYFTIN--HLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
.+|.+++|+|||++|+++ .++.|++||+.+++ .+..+..+........+... ....+..... ..+..+. .
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENEN-ENKKLKS---N 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccc-ccccccc---C
Confidence 578899999999977766 57899999999998 55555433210000000000 0000000000 0000000 0
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eE-EEEeCCCcEEEEeCC--CCeEEEEE---ecCCcEE
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVG--IDRCLRVF---SHNNYVT 432 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~--s~~~~~~~---~h~~~V~ 432 (755)
.... . ...... ...+.....+|.+.|.+++|+|++ +| ++++.|++|+|||+. +++++..+ .|...|+
T Consensus 80 ~~~~--~---~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~ 153 (450)
T 2vdu_B 80 KGDS--I---KRTAAK-VPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN 153 (450)
T ss_dssp --------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEE
T ss_pred cCcc--c---cccCcc-ccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCce
Confidence 0000 0 000000 011223445788899999999999 64 889999999999999 88888777 4789999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-----EeccCCcceEEEEEccC---CCeEEEEeCCCcEEEEECCCCeE
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPD---GKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-----~~~~~~~~V~~v~~spd---g~~la~gs~dg~I~iwD~~~~~~ 504 (755)
+++|+| ++++|++|+.||.|++|++.++... .+..|...|++++|+|+ +++|++|+.|+.|++||+.++..
T Consensus 154 ~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 154 AISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred EEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence 999999 9999999999999999999877644 45678899999999999 99999999999999999998875
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeee----------------------
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF---------------------- 562 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~---------------------- 562 (755)
+... ...|...|++++|+ ++.+|++++.|+.|+|||+.+..........
T Consensus 233 ~~~~-------~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (450)
T 2vdu_B 233 VDKW-------LFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN 303 (450)
T ss_dssp EEEE-------CCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred eeee-------ecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccc
Confidence 5321 22467899999999 8899999999999999999876544433211
Q ss_pred -ccCCceEEEEEecCCCEEEEEe-CCCcEEEEEc
Q 004410 563 -RVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNY 594 (755)
Q Consensus 563 -~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~ 594 (755)
.....|..++|+|++++|++++ .|+.|+||++
T Consensus 304 ~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 304 DIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp -CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 2345789999999999999999 8999999999
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-27 Score=264.90 Aligned_cols=251 Identities=11% Similarity=0.109 Sum_probs=194.6
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+.+|...+.+++|+|+| .++.+.+|+..... .+. ..|...|.+++|||||++||+++.||.|+
T Consensus 47 ~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~~~--------~~~~~~V~~vawSPdG~~LAs~s~dg~V~ 110 (588)
T 2j04_A 47 DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-LLN--------SQPVCYPRVCKPSPIDDWMAVLSNNGNVS 110 (588)
T ss_dssp CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-SST--------TSCSCCEEEEEECSSSSCEEEEETTSCEE
T ss_pred eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-Eee--------cCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 446788899999999999 46666666543211 111 14678999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
||+... . +..+. |..
T Consensus 111 iwd~~~--~--------------------------------------------------------------l~~l~-~~~ 125 (588)
T 2j04_A 111 VFKDNK--M--------------------------------------------------------------LTNLD-SKG 125 (588)
T ss_dssp EEETTE--E--------------------------------------------------------------EEECC-CSS
T ss_pred EEeCCc--e--------------------------------------------------------------eeecc-CCC
Confidence 999532 1 12223 333
Q ss_pred -----CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe-------EEEEE-----ecCCcEEEEEEeeCCCCEEEEEeCCC
Q 004410 390 -----EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-------CLRVF-----SHNNYVTSVAFNPVDDNYFISGSIDG 451 (755)
Q Consensus 390 -----~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~-------~~~~~-----~h~~~V~~i~fsp~d~~~l~sgs~Dg 451 (755)
.|.+++|||+| +|++|+.||+|+|||+.++. .+.++ +|...|.+++|+| ++ +++++.|+
T Consensus 126 ~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~ 202 (588)
T 2j04_A 126 NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNN 202 (588)
T ss_dssp CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTC
T ss_pred ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCC
Confidence 59999999999 99999999999999999885 35665 2678999999999 77 88899999
Q ss_pred cEEEEEcCCCeEE----Ee-ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEE
Q 004410 452 KVRIWEVRRCQVV----DY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGF 526 (755)
Q Consensus 452 ~V~iwdl~~~~~~----~~-~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v 526 (755)
+|++||+.++... .+ ..|...|.+++|+ |+.||+++ +++|++||+.+++.... ...|...|..+
T Consensus 203 tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~--------~~gh~~~V~~v 271 (588)
T 2j04_A 203 SVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL--------KTGSLENFHII 271 (588)
T ss_dssp CEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE--------ECSCCSCCCEE
T ss_pred eEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE--------EcCCCceEEEE
Confidence 9999999887732 24 3677899999999 68899887 69999999999887421 22477899999
Q ss_pred EE--cCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 527 QF--SPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 527 ~f--sp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+| +| ++..++++..||+ ++|.... ++|+||+..+++. |++|++|+...+
T Consensus 272 a~~~s~-d~~~La~a~edG~-klw~~d~------------------~~~spd~~l~a~~--d~~v~lW~~~g~ 322 (588)
T 2j04_A 272 PLNHEK-ESTILLMSNKTSY-KVLLEDE------------------LHVTADNIIAPYL--EKKFKKWSTIWN 322 (588)
T ss_dssp EETTCS-SCEEEEECSSCEE-EEEESSS------------------EEEECCCSSHHHH--HHHHHHTTTTTT
T ss_pred EeeeCC-CCCEEEEEcCCCC-EEEeecc------------------EEECCCceEEEEc--CCEEEEEECCCC
Confidence 99 99 8899999999999 9998651 3466666655554 666666665433
No 119
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=1.6e-25 Score=236.45 Aligned_cols=242 Identities=22% Similarity=0.325 Sum_probs=203.0
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
+|...|.+++|+|++++||+|+.||+|+||++.... ..+.+.+|...+.++.+ ++.+|++++.++.+++|+
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-------~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~ 135 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-------RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 135 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-------eEEEecCccceEEEeec--CCCEEEEEecCCceEeee
Confidence 445568889999999999999999999999987543 33567899998887655 577999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
...... .+..+.+|...+.
T Consensus 136 ~~~~~~-------------------------------------------------------------~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 136 VRVAEH-------------------------------------------------------------HVATLSGHSQEVC 154 (318)
T ss_dssp TTSSSC-------------------------------------------------------------EEEEEECCSSCEE
T ss_pred cCCCce-------------------------------------------------------------eEEEEcCccCceE
Confidence 765431 2445678999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeEE-----EEEecCCcEEEEEEeeCCCCEE--EEEeCCCcEEEEEcCCCeEE
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCL-----RVFSHNNYVTSVAFNPVDDNYF--ISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~-----~~~~h~~~V~~i~fsp~d~~~l--~sgs~Dg~V~iwdl~~~~~~ 464 (755)
.+.+++++ +|++++.|++|++||+.+++.. ....+...|.+++++|.+...+ ++++.++.|++||.......
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 99999999 9999999999999999876532 2224888999999999555655 35677899999999999988
Q ss_pred EeccCCcceEEEEEccCCCeEEEEe--CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGT--MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs--~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
....+...+..++|+|++..+++++ .|+.|++||+.+++++.. ...|...|++++|+| ++.+|++++.|
T Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~--------l~gH~~~V~~l~~sp-dg~~l~S~s~D 305 (318)
T 4ggc_A 235 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--------LKGHTSRVLSLTMSP-DGATVASAAAD 305 (318)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT-TSSCEEEEETT
T ss_pred ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE--------EcCCCCCEEEEEEcC-CCCEEEEEecC
Confidence 8888889999999999999888765 799999999999987754 234778999999999 89999999999
Q ss_pred CcEEEEECCcc
Q 004410 543 SLVRVLCGENV 553 (755)
Q Consensus 543 g~I~iwd~~~~ 553 (755)
++|+|||+.+.
T Consensus 306 ~~v~iWd~~~~ 316 (318)
T 4ggc_A 306 ETLRLWRCFEL 316 (318)
T ss_dssp TEEEEECCSCC
T ss_pred CeEEEEECCCC
Confidence 99999998653
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=1.1e-25 Score=243.46 Aligned_cols=246 Identities=9% Similarity=0.062 Sum_probs=181.4
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+++.+|.+.|++++|+|||++||+|+.++ ++||++.+++.....
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~----------------------------------- 56 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ----------------------------------- 56 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE-----------------------------------
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee-----------------------------------
Confidence 34578999999999999999999998775 789998665432110
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~ 435 (755)
+...+..+++.+++ .+++++.|++|++||+.+++++..+.+...|.+++
T Consensus 57 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~ 107 (355)
T 3vu4_A 57 -----------------------------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLF 107 (355)
T ss_dssp -----------------------------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred -----------------------------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEE
Confidence 11135566777766 44678888999999999999999999999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCC-eEEEeccCCcceEEEEEccCCCeEEE--EeCCCcEEEEECCCCeEeeeeeEE-
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDIREIVSAVCYCPDGKGGIV--GTMTGNCRFYDIKDNQLYQQNQIC- 511 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~-~~~~~~~~~~~V~~v~~spdg~~la~--gs~dg~I~iwD~~~~~~~~~~~~~- 511 (755)
|++ + .++++ .|+.|++||+.+. +.+..... ....+++++ .++++ |+.+|.|++||+.++.........
T Consensus 108 ~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~ 179 (355)
T 3vu4_A 108 LSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV 179 (355)
T ss_dssp ECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------
T ss_pred EcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc
Confidence 987 3 34444 4889999999987 44422222 445566777 56666 588999999999986521100000
Q ss_pred ------e-cccccCCCCCeEEEEEcCCCCCEEEEEECCCc-EEEEECCcceeeEEEeeec-cCCceEEEEEecCCCEEEE
Q 004410 512 ------L-QGKKKLPGKRITGFQFSPSDPSKVIVTSADSL-VRVLCGENVVGKFKASAFR-VAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 512 ------~-~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~-I~iwd~~~~~~~~~~~~~~-~~~~v~~l~fspdg~~L~s 582 (755)
. ......|...|++++|+| ++.+|++++.|++ |+|||..+........ .+ |...|.+++|+|+|++|++
T Consensus 180 ~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~-~g~h~~~v~~~~~s~~~~~l~s 257 (355)
T 3vu4_A 180 QQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFR-RGLDRADVVDMKWSTDGSKLAV 257 (355)
T ss_dssp -------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEE-CTTCCSCEEEEEECTTSCEEEE
T ss_pred cccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEE-cCCCCCcEEEEEECCCCCEEEE
Confidence 0 112345788999999999 9999999999998 9999998866555542 13 8899999999999999999
Q ss_pred EeCCCcEEEEEcCCCC
Q 004410 583 PSEDSNIYIWNYSNQD 598 (755)
Q Consensus 583 gs~Dg~I~iWd~~~~~ 598 (755)
++.|+.|+|||+..+.
T Consensus 258 ~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 258 VSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EETTCEEEEEESSCCS
T ss_pred EECCCEEEEEEccCCC
Confidence 9999999999998763
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.7e-26 Score=246.80 Aligned_cols=232 Identities=13% Similarity=0.121 Sum_probs=178.2
Q ss_pred EEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeC
Q 004410 291 KFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370 (755)
Q Consensus 291 ~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (755)
.+.+++.+|++|+.||+|++||+.+++.+..+.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------------------------------------------- 75 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----------------------------------------------- 75 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----------------------------------------------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----------------------------------------------
Confidence 455688999999999999999998876543321
Q ss_pred CcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCC---------CCeEEEEEe--cCCcEEEEEEee-
Q 004410 371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVG---------IDRCLRVFS--HNNYVTSVAFNP- 438 (755)
Q Consensus 371 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~---------s~~~~~~~~--h~~~V~~i~fsp- 438 (755)
...|.++.|+|+ +++++.|++|++|+.. +++.+..+. |...|.+++|+|
T Consensus 76 -----------------~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 76 -----------------TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNE 136 (343)
T ss_dssp -----------------EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC-
T ss_pred -----------------cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCC
Confidence 122344556666 8888888888888654 666555553 668899999998
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEec--cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe-eeeeEEeccc
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY-QQNQICLQGK 515 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~--~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~-~~~~~~~~~~ 515 (755)
.++++|++++.||+|++||+++++.+... .+...|++++|+|+|.+|++|+.||.|++||+++++.. ..
T Consensus 137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~-------- 208 (343)
T 3lrv_A 137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR-------- 208 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEE--------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccE--------
Confidence 35789999999999999999998887433 45557999999999999999999999999999988754 22
Q ss_pred ccC-CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee-eccCCce--EEEEEecCCCEEEEEeC-CCcEE
Q 004410 516 KKL-PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA-FRVAGSQ--MFATFTSDGKHVVSPSE-DSNIY 590 (755)
Q Consensus 516 ~~~-~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~~v--~~l~fspdg~~L~sgs~-Dg~I~ 590 (755)
... |...|++++|+| ++.+|++++ |+.|++||+........... ..+...+ .+++|+|+|++|++++. |+.|+
T Consensus 209 ~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~ 286 (343)
T 3lrv_A 209 FPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT 286 (343)
T ss_dssp CCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred EeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence 222 678999999999 899999999 55999999887543221100 0122222 46999999999999998 99999
Q ss_pred EEEcCCCC
Q 004410 591 IWNYSNQD 598 (755)
Q Consensus 591 iWd~~~~~ 598 (755)
||++.+..
T Consensus 287 v~~~~~~~ 294 (343)
T 3lrv_A 287 IYKFDKKT 294 (343)
T ss_dssp EEEECTTT
T ss_pred EEEEcccc
Confidence 99997665
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=2.1e-26 Score=252.73 Aligned_cols=237 Identities=13% Similarity=0.117 Sum_probs=172.2
Q ss_pred cceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--------CCCEEEEEcCCCcEEE
Q 004410 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--------DGQYLASGGEDGTVRV 310 (755)
Q Consensus 239 ~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--------dg~~LaSgs~Dg~I~v 310 (755)
....+++++.+||+|+.|++|+||+....... .......+.+|.+.|++|+|+| |+++||||+.|++|+|
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~--~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~ 170 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETII--TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII 170 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEE--EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccc--eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence 34667888889999999999999997754321 1223345789999999999998 8999999999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.++.. +..+.+|...
T Consensus 171 Wd~~~~~~--------------------------------------------------------------~~~~~~~~~~ 188 (393)
T 4gq1_A 171 WRLTDEGP--------------------------------------------------------------ILAGYPLSSP 188 (393)
T ss_dssp EEEETTEE--------------------------------------------------------------EEEEEECSSC
T ss_pred EECCCCce--------------------------------------------------------------eeeecCCCCC
Confidence 99976643 2334568899
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE--------------------------ecCCcEEEEEEeeCCCC
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF--------------------------SHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~--------------------------~h~~~V~~i~fsp~d~~ 442 (755)
|.+++|+|++ +|++++.|++|++||+.+++..... .|...|.++.|.+.++.
T Consensus 189 v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~ 268 (393)
T 4gq1_A 189 GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS 268 (393)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC
T ss_pred cEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC
Confidence 9999999987 7999999999999999887654322 26678899999854999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEE-EeccCCcceE------------------EEEEcc--CCCeEEEEeCCCcEEEEECCC
Q 004410 443 YFISGSIDGKVRIWEVRRCQVV-DYTDIREIVS------------------AVCYCP--DGKGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 443 ~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~------------------~v~~sp--dg~~la~gs~dg~I~iwD~~~ 501 (755)
.|++++.|+++++||+..++.. .+..+...+. ...|+| ++.++++|+.||.|++||+.+
T Consensus 269 ~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~ 348 (393)
T 4gq1_A 269 GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE 348 (393)
T ss_dssp EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC
T ss_pred EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC
Confidence 9999999999999999876543 2222222222 233444 344667788999999999998
Q ss_pred CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 502 NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
+...... ..+...|.+++|+| ++++|++++.+| +.+|.
T Consensus 349 ~~~~~~~--------~~~~~~V~svafsp-dG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 349 KDSNSIP--------IQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp TTCCEEE--------EECSSCEEEEEECT-TSSEEEEEESSE-EEEEE
T ss_pred CcEEEEe--------cCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEE
Confidence 8765431 22557899999999 999999998776 44444
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=3.8e-24 Score=233.54 Aligned_cols=278 Identities=17% Similarity=0.195 Sum_probs=212.6
Q ss_pred cCcceeecCCCCee-EEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEE-EEcCCCcEEEEEcc
Q 004410 237 RHGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVI 314 (755)
Q Consensus 237 ~~~~~~~spdg~~l-asgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~La-Sgs~Dg~I~vWdv~ 314 (755)
.+.+++|+|+++++ ++++.++.|++|+...... .+.+..|. .|.+++|+|++++|+ +++.++.|++||+.
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~ 104 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence 45679999999976 6777899999999865432 23344444 899999999999875 55567999999998
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
+++.+..+ . +...+.++
T Consensus 105 ~~~~~~~~--------------------------------------------------------------~-~~~~~~~~ 121 (391)
T 1l0q_A 105 SNTVAGTV--------------------------------------------------------------K-TGKSPLGL 121 (391)
T ss_dssp TTEEEEEE--------------------------------------------------------------E-CSSSEEEE
T ss_pred CCeEEEEE--------------------------------------------------------------e-CCCCcceE
Confidence 77643221 1 23467899
Q ss_pred EEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEEcCCCeEEEeccCCc
Q 004410 395 SWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (755)
Q Consensus 395 ~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l-~sgs~Dg~V~iwdl~~~~~~~~~~~~~ 471 (755)
+|+|++ .| ++++.++.|++||+.+++.+..+.....+.+++|+| +++++ ++++.++.|++||+++++.+....+..
T Consensus 122 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 200 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC
Confidence 999999 55 688889999999999999999998778889999999 78776 677889999999999999887777788
Q ss_pred ceEEEEEccCCCeEEEEe---CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE-EEEECCCcEEE
Q 004410 472 IVSAVCYCPDGKGGIVGT---MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV-IVTSADSLVRV 547 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs---~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l-~s~s~Dg~I~i 547 (755)
.+.+++|+|+|++|++++ .++.|++||+.+++.+.... ....+.+++|+| ++++| ++++.|+.|++
T Consensus 201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~s~-dg~~l~~s~~~d~~v~v 270 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP---------VGPDPAGIAVTP-DGKKVYVALSFXNTVSV 270 (391)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE---------CCSSEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe---------cCCCccEEEEcc-CCCEEEEEcCCCCEEEE
Confidence 899999999999999988 68999999999987654322 123578999999 67666 66688999999
Q ss_pred EECCcceeeEEEeeeccCCce---------------EEEEEecCC----------CEEEEEeCCCcEEEEEcCCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQ---------------MFATFTSDG----------KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v---------------~~l~fspdg----------~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
||..+....... ..+..+. ....|+.+. ..+...+.|..+++|++.++.
T Consensus 271 ~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 271 IDTATNTITATM--AVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp EETTTTEEEEEE--ECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred EECCCCcEEEEE--ECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence 998875443332 1121111 112233222 345666778899999998776
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.6e-24 Score=226.83 Aligned_cols=281 Identities=16% Similarity=0.154 Sum_probs=193.5
Q ss_pred cEEEEEEecCCC---EEEEEcCCCcEEEEEccCC---eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 286 SILTMKFSLDGQ---YLASGGEDGTVRVWKVIEH---ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 286 ~V~~l~fspdg~---~LaSgs~Dg~I~vWdv~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
.+.+|.|-.-|- .++++++ .+|++|+..++ +.+++...+...+..+.+.++..+.+. +....-.+.....+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~v~sla 118 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC-VALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE-EEECSSSEEEEEEEC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee-eeeccccccceEEEE
Confidence 356666755443 6888886 58999999998 888888888877777777766555443 333333333333333
Q ss_pred ecCC----ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEe---CCCcEEEEeCC-CCeEEEEE-ecCCc
Q 004410 360 KSSD----LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS---ADKTVRLWQVG-IDRCLRVF-SHNNY 430 (755)
Q Consensus 360 ~~~~----~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s---~Dg~V~iWdl~-s~~~~~~~-~h~~~ 430 (755)
-+.+ .... .-.+|...|..+ +++.++.++ .|++|++|++. .++.+..+ .|...
T Consensus 119 ~spd~~~~~~~l---------------~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~ 180 (356)
T 2w18_A 119 CSSDDESEKQVL---------------LKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE 180 (356)
T ss_dssp C------CCEEE---------------EEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS
T ss_pred ECCCccccccEE---------------EeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc
Confidence 3333 2211 113444445554 566655554 49999999994 47776665 48888
Q ss_pred EEEEEEeeC--CCCEEEEEeCCCcEEEEEcCCCeEEE-eccCC---cceEEEEEccCCCeE------------EEEeCCC
Q 004410 431 VTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR---EIVSAVCYCPDGKGG------------IVGTMTG 492 (755)
Q Consensus 431 V~~i~fsp~--d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~~~---~~V~~v~~spdg~~l------------a~gs~dg 492 (755)
++.++|+|. ++.+|++|+.|++|+|||+.+++++. +..+. ..+.+++|+|+|+++ ++|+.|+
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 888888874 66999999999999999999998874 43333 367888999999887 5577899
Q ss_pred cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceE-EE
Q 004410 493 NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQM-FA 571 (755)
Q Consensus 493 ~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~-~l 571 (755)
+|++||..+++.+....+.+ ...|...+.+..+ ++.++++++.|++|+|||+.+....... .+|...+. .+
T Consensus 261 tIklWd~~tgk~l~v~~~~~---p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL--~gH~~~vvs~v 332 (356)
T 2w18_A 261 QLIVINPKTTLSVGVMLYCL---PPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALL--PPVSDQHWSFV 332 (356)
T ss_dssp EEEEEETTTTEEEEEEEECC---CTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEE--CCC--CCCCEE
T ss_pred EEEEEECCCCEEEEEEEeec---cCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEe--cCCCCCeEEEE
Confidence 99999999998775433222 1123333444444 3578999999999999999987655554 56666554 68
Q ss_pred EEecCCCEEEEEeCCCcEEEEEc
Q 004410 572 TFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 572 ~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+|+|||++|++|+.|++|+|||+
T Consensus 333 afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999999996
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=1.6e-24 Score=240.04 Aligned_cols=248 Identities=11% Similarity=0.106 Sum_probs=202.0
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
.+..+ ..+.+++|+|++.++++++.|+.|++||+.+++....+.
T Consensus 118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~----------------------------------- 161 (433)
T 3bws_A 118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP----------------------------------- 161 (433)
T ss_dssp EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC-----------------------------------
T ss_pred EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC-----------------------------------
Confidence 34444 346699999988888888999999999998876542211
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEE
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~f 436 (755)
...+.+|...|.+++|++++ .+++++.|+.|++||+.+++.+..+. |...+.+++|
T Consensus 162 ----------------------~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 219 (433)
T 3bws_A 162 ----------------------PEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLY 219 (433)
T ss_dssp ----------------------CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEE
T ss_pred ----------------------cccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEE
Confidence 11245788999999999999 88899999999999999999988885 8889999999
Q ss_pred eeCCCCEEE-EEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEe--------CCCcEEEEECCCCeEeee
Q 004410 437 NPVDDNYFI-SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT--------MTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 437 sp~d~~~l~-sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs--------~dg~I~iwD~~~~~~~~~ 507 (755)
+| ++++++ +++.|+.|++||+++++.+........+.+++|+|+|+.|++++ .||.|++||+.+++....
T Consensus 220 ~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 220 DP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT 298 (433)
T ss_dssp ET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred cC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence 99 777774 55589999999999999887666677899999999999999988 488999999999877653
Q ss_pred eeEEecccccCCCCCeEEEEEcCCCCC-EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC-
Q 004410 508 NQICLQGKKKLPGKRITGFQFSPSDPS-KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE- 585 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~fsp~d~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~- 585 (755)
.. +...+.+++|+| +++ ++++++.|+.|++||..+...... ..+...+.+++|+|+|++|++++.
T Consensus 299 ~~---------~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 299 IG---------PPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKVQKS---IPVFDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp EE---------EEECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEEEEE---EECSSSEEEEEECTTSSEEEEEECC
T ss_pred cc---------CCCCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcEEEE---ecCCCCCCeEEEcCCCCEEEEEecC
Confidence 21 123678999999 554 566778999999999987554433 346678999999999999998887
Q ss_pred --------------CCcEEEEEcCCCC
Q 004410 586 --------------DSNIYIWNYSNQD 598 (755)
Q Consensus 586 --------------Dg~I~iWd~~~~~ 598 (755)
||.|++||+.+++
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred CCccccccccccccceEEEEEECCCCc
Confidence 5799999998876
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=5.1e-24 Score=235.51 Aligned_cols=279 Identities=12% Similarity=0.065 Sum_probs=216.5
Q ss_pred cCcceeecCCCC-eeEEee----CCC----eEEEEEC--CCCcccccccccceeeecccccEEEEEEec-----------
Q 004410 237 RHGSATLKPGDH-ELTLGQ----RMR----RVRVHPV--KKQSRELSSLYTGQEFLAHEGSILTMKFSL----------- 294 (755)
Q Consensus 237 ~~~~~~~spdg~-~lasgs----~dg----~V~Vw~~--~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp----------- 294 (755)
.+....|.+.|. ++++|+ .+| .|+|||+ .++... ....+.+|...+..+++++
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~ 138 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-----AQNSYKVNKQWLRYAGHTASDEVFEKLTGI 138 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-----EEEEEEECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-----eeeEEEcChhHHHHHHHHHHHHHHHHHcCC
Confidence 455577888876 555775 467 8999998 654422 1245778888888888775
Q ss_pred ---CCCEEEEEcCC------CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 295 ---DGQYLASGGED------GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 295 ---dg~~LaSgs~D------g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
.+..|+.++.+ +.|++||+..+.
T Consensus 139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~------------------------------------------------ 170 (415)
T 2hqs_A 139 KGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN------------------------------------------------ 170 (415)
T ss_dssp CCCTTCEEEEEEECSSSSCCEEEEEEETTSCS------------------------------------------------
T ss_pred CCcCCCEEEEEEecCCCCccceEEEEcCCCCC------------------------------------------------
Confidence 25666666654 799999985332
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCC
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK---TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD 441 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg---~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~ 441 (755)
...+.+|...|.+++|+|+| .|++++.++ .|++||+.++++.....|...+.+++|+| ++
T Consensus 171 ---------------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp-dg 234 (415)
T 2hqs_A 171 ---------------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DG 234 (415)
T ss_dssp ---------------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TS
T ss_pred ---------------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcC-CC
Confidence 23455688899999999999 899998875 99999999999887777888999999999 88
Q ss_pred CEEE-EEeCCCc--EEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC-CC--cEEEEECCCCeEeeeeeEEeccc
Q 004410 442 NYFI-SGSIDGK--VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TG--NCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 442 ~~l~-sgs~Dg~--V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg--~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
++|+ +++.|+. |++||+.+++...+..+...+.+++|+|||+.|++++. ++ .|++||+.+++...
T Consensus 235 ~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~--------- 305 (415)
T 2hqs_A 235 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR--------- 305 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE---------
T ss_pred CEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE---------
Confidence 8777 6666665 99999999988888888889999999999999998886 44 68888998876432
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECC---CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC---cE
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSAD---SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS---NI 589 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg---~I 589 (755)
...+...+..++|+| ++++|++++.+ ..|++||..+..... . ..+ ..+.+++|+|||++|++++.|+ .|
T Consensus 306 l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l--~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l 380 (415)
T 2hqs_A 306 ITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQV-L--SST-FLDETPSLAPNGTMVIYSSSQGMGSVL 380 (415)
T ss_dssp CCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEEE-C--CCS-SSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred EecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEEE-e--cCC-CCcCCeEEcCCCCEEEEEEcCCCccEE
Confidence 112345788999999 88888877764 589999988754422 1 333 3889999999999999998887 79
Q ss_pred EEEEcCCCC
Q 004410 590 YIWNYSNQD 598 (755)
Q Consensus 590 ~iWd~~~~~ 598 (755)
++||+..+.
T Consensus 381 ~~~d~~g~~ 389 (415)
T 2hqs_A 381 NLVSTDGRF 389 (415)
T ss_dssp EEEETTSCC
T ss_pred EEEECCCCc
Confidence 999987544
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=5.5e-23 Score=215.31 Aligned_cols=213 Identities=13% Similarity=0.044 Sum_probs=153.3
Q ss_pred cccEEEEEEecC----CCEEEEEcCCCcEEEEEccCCeeeeee-ecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 284 EGSILTMKFSLD----GQYLASGGEDGTVRVWKVIEHERLDGF-DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 284 ~~~V~~l~fspd----g~~LaSgs~Dg~I~vWdv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
...|++|+|+|| ++++++++.+ ++||++.+++.+... ..+.. .+..+.+..
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~-------------~V~~~~~s~--------- 166 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQ-------------QVEVMTFAE--------- 166 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTC-------------EEEEEEECT---------
T ss_pred ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCC-------------cEEEEEECC---------
Confidence 347888888889 8899998854 888998777655432 11111 111111111
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC---CC-eEEEEeCCCcEEEEeCCCCeEEEEEe-c---CCc
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK---NG-FLLSSSADKTVRLWQVGIDRCLRVFS-H---NNY 430 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~---~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h---~~~ 430 (755)
.++.+..+.+|...+..++|++ ++ .|++++.|++|+|||+.++++++++. | ...
T Consensus 167 ------------------dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~ 228 (356)
T 2w18_A 167 ------------------DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQAS 228 (356)
T ss_dssp ------------------TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CC
T ss_pred ------------------CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceee
Confidence 0233456678999999999998 55 99999999999999999999999995 3 346
Q ss_pred EEEEEEeeCCCCEE------------EEEeCCCcEEEEEcCCCeEEEec------cCCcceEEEEEccCCCeEEEEeCCC
Q 004410 431 VTSVAFNPVDDNYF------------ISGSIDGKVRIWEVRRCQVVDYT------DIREIVSAVCYCPDGKGGIVGTMTG 492 (755)
Q Consensus 431 V~~i~fsp~d~~~l------------~sgs~Dg~V~iwdl~~~~~~~~~------~~~~~V~~v~~spdg~~la~gs~dg 492 (755)
+.+++|+| ++.++ ++|+.|++|++||..+++.+... +|...+.+..+ ++..+++|+.||
T Consensus 229 v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~Dg 305 (356)
T 2w18_A 229 VCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSG 305 (356)
T ss_dssp CEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTS
T ss_pred eEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCC
Confidence 88889999 88876 56889999999999999876422 44444443333 488999999999
Q ss_pred cEEEEECCCCeEeeeeeEEecccccCCCCC-eEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 493 NCRFYDIKDNQLYQQNQICLQGKKKLPGKR-ITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 493 ~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~-I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
+|+|||+.+++.+.++ . .|... +..++|+| ++++|++|+.|++|+|||.
T Consensus 306 TIkIWDl~tGk~l~tL----~----gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 306 TIAIWDLLLGQCTALL----P----PVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEETTTCSEEEEE----C----CC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cEEEEECCCCcEEEEe----c----CCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 9999999999987642 2 23333 44689999 9999999999999999984
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=1.4e-22 Score=231.39 Aligned_cols=319 Identities=12% Similarity=0.105 Sum_probs=230.7
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc--cCCee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV--IEHER 318 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv--~~~~~ 318 (755)
-+++|++.+++++..+++|.+||..+.. ..+++..+.. +..++|+|||++|++++.|+.|++||+ .+++.
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~-------~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDGDSKK-------IVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEETTTCC-------EEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred cccCCCCEEEEEEcCCCeEEEEECCCce-------EEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence 3589999999999999999999976543 2244552222 889999999999999999999999999 88888
Q ss_pred eeeeecCCCCCceeEEee----CCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC--------
Q 004410 319 LDGFDVQDTDPSCLYFTI----NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-------- 386 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------- 386 (755)
+..+.. ...+..+.|.+ ++. .++.... .+..+.+|+.... +++.++..
T Consensus 215 ~~~i~~-g~~p~~va~sp~~~~dg~-~l~v~~~--------------~~~~v~v~D~~t~----~~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 215 VAEIKI-GIEARSVESSKFKGYEDR-YTIAGAY--------------WPPQFAIMDGETL----EPKQIVSTRGMTVDTQ 274 (543)
T ss_dssp EEEEEC-CSEEEEEEECCSTTCTTT-EEEEEEE--------------ESSEEEEEETTTC----CEEEEEECCEECSSSC
T ss_pred EEEEec-CCCcceEEeCCCcCCCCC-EEEEEEc--------------cCCeEEEEecccc----ccceeecccCcccCcc
Confidence 877764 33455666665 332 2222211 1334444443322 22333322
Q ss_pred --C-CCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEE--EEecCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEEc
Q 004410 387 --H-SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEV 458 (755)
Q Consensus 387 --h-~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~--~~~h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iwdl 458 (755)
| ...+..+.+++++ .+++...+++|.+||+.+.+.+. .+.+...+.++.|+| ++++|++++ .+++|.+||+
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~ 353 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDS 353 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEET
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC-CCCEEEEEecCCCeEEEEEC
Confidence 2 2378999999987 67778889999999998866544 556778899999999 888776554 6899999999
Q ss_pred CCCeEEEecc-----CCcceEEEEEccC-CCeEEEEe-CCCcEEEEECCC-------CeEeeeeeEEecccccCCCCCeE
Q 004410 459 RRCQVVDYTD-----IREIVSAVCYCPD-GKGGIVGT-MTGNCRFYDIKD-------NQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 459 ~~~~~~~~~~-----~~~~V~~v~~spd-g~~la~gs-~dg~I~iwD~~~-------~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
.+++++.... |......+ ++|+ |..++++. .+++|.+||+.+ .+.++.+ ..+...+.
T Consensus 354 ~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l--------~~~g~~~~ 424 (543)
T 1nir_A 354 KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL--------QGQGGGSL 424 (543)
T ss_dssp TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE--------ECSCSCCC
T ss_pred CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE--------EcCCCCce
Confidence 9998875332 33333333 5777 55566665 579999999988 5555432 23456678
Q ss_pred EEEEcCCCCCEEEEEE-------CCCcEEEEECCcceeeEEEee-------eccCCceEEEEEecCCCEEEEEe-----C
Q 004410 525 GFQFSPSDPSKVIVTS-------ADSLVRVLCGENVVGKFKASA-------FRVAGSQMFATFTSDGKHVVSPS-----E 585 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s-------~Dg~I~iwd~~~~~~~~~~~~-------~~~~~~v~~l~fspdg~~L~sgs-----~ 585 (755)
.+.++| ++++|++++ .+++|.|||..+....+.... ..+...+..+.|+|+|++|+++. .
T Consensus 425 ~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~ 503 (543)
T 1nir_A 425 FIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKND 503 (543)
T ss_dssp CEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTS
T ss_pred EEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCC
Confidence 899999 899999987 277999999998765533321 23467899999999999998763 4
Q ss_pred CCcEEEEEcCCCC
Q 004410 586 DSNIYIWNYSNQD 598 (755)
Q Consensus 586 Dg~I~iWd~~~~~ 598 (755)
|+.|.|||..+++
T Consensus 504 ~~~i~v~D~~t~~ 516 (543)
T 1nir_A 504 SSALVVVDDKTLK 516 (543)
T ss_dssp CCEEEEEETTTTE
T ss_pred CCeEEEEECCCce
Confidence 7999999999987
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=3.5e-22 Score=220.76 Aligned_cols=246 Identities=13% Similarity=0.069 Sum_probs=194.0
Q ss_pred CCeeEEeeCC------CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC---cEEEEEccCCe
Q 004410 247 DHELTLGQRM------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---TVRVWKVIEHE 317 (755)
Q Consensus 247 g~~lasgs~d------g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg---~I~vWdv~~~~ 317 (755)
+..++.++.+ +.|++||..... .+.+.+|.+.|.+++|+|||++||+++.++ .|++||+.+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 5556655543 799999986321 245778999999999999999999999875 99999998765
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
.. .+..|...+.+++|+
T Consensus 215 ~~---------------------------------------------------------------~l~~~~~~~~~~~~s 231 (415)
T 2hqs_A 215 VR---------------------------------------------------------------QVASFPRHNGAPAFS 231 (415)
T ss_dssp EE---------------------------------------------------------------EEECCSSCEEEEEEC
T ss_pred EE---------------------------------------------------------------EeecCCCcccCEEEc
Confidence 31 234567789999999
Q ss_pred CCC-eEE-EEeCCCc--EEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CC--cEEEEEcCCCeEEEeccCC
Q 004410 398 KNG-FLL-SSSADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIR 470 (755)
Q Consensus 398 ~~~-~L~-s~s~Dg~--V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg--~V~iwdl~~~~~~~~~~~~ 470 (755)
|+| .|+ +++.++. |++||+.++++.....|...+.+++|+| ++++|++++. ++ .|++||+.+++...+..+.
T Consensus 232 pdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~ 310 (415)
T 2hqs_A 232 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG 310 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCC
Confidence 999 666 6666655 9999999998866667888999999999 9998888876 44 6888899988877766777
Q ss_pred cceEEEEEccCCCeEEEEeCC---CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC---c
Q 004410 471 EIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS---L 544 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~d---g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg---~ 544 (755)
..+.+++|+|||++|++++.+ +.|++||+.+++... +. .+ ..+..++|+| ++++|++++.++ .
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-----l~----~~-~~~~~~~~sp-dg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-----LS----ST-FLDETPSLAP-NGTMVIYSSSQGMGSV 379 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-----CC----CS-SSCEEEEECT-TSSEEEEEEEETTEEE
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-----ec----CC-CCcCCeEEcC-CCCEEEEEEcCCCccE
Confidence 889999999999999988764 579999999887632 11 12 2789999999 888888888777 7
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK 578 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~ 578 (755)
|++||..... ... ...+.+.|.+++|+|.-.
T Consensus 380 l~~~d~~g~~-~~~--l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 380 LNLVSTDGRF-KAR--LPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEETTSCC-EEE--CCCSSSEEEEEEECCCCC
T ss_pred EEEEECCCCc-EEE--eeCCCCCCcCCccccccc
Confidence 9999986432 222 266888999999999754
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=9.8e-22 Score=209.44 Aligned_cols=278 Identities=13% Similarity=0.152 Sum_probs=191.1
Q ss_pred eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC-CcEEEEEcc--CCeeeeeeecC
Q 004410 249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-GTVRVWKVI--EHERLDGFDVQ 325 (755)
Q Consensus 249 ~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D-g~I~vWdv~--~~~~~~~~~~~ 325 (755)
++++++.++.|++|++..... +. ..+ ...|...+.+++|+|+|++|++++.+ +.|++|++. ++...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~-~~---~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~------ 75 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA-LT---LTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT------ 75 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC-EE---EEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE------
T ss_pred EEEeCCCCCeEEEEEECCCCc-EE---Eee-eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee------
Confidence 344457799999999753111 11 111 23477789999999999999888876 899999986 33211
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEE
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s 404 (755)
.+..+..+. .+..++|+|++ +|++
T Consensus 76 ------------------------------------------------------~~~~~~~~~-~~~~~~~s~dg~~l~~ 100 (343)
T 1ri6_A 76 ------------------------------------------------------FAAESALPG-SLTHISTDHQGQFVFV 100 (343)
T ss_dssp ------------------------------------------------------EEEEEECSS-CCSEEEECTTSSEEEE
T ss_pred ------------------------------------------------------eccccccCC-CCcEEEEcCCCCEEEE
Confidence 011222222 67789999999 6666
Q ss_pred Ee-CCCcEEEEeC---CCCeEEEEEecCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEEcCC-CeEEE-----e-ccCCcc
Q 004410 405 SS-ADKTVRLWQV---GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR-CQVVD-----Y-TDIREI 472 (755)
Q Consensus 405 ~s-~Dg~V~iWdl---~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iwdl~~-~~~~~-----~-~~~~~~ 472 (755)
++ .++.|.+||+ ...+.+..+.....+.+++|+| +++++++++ .++.|++||+.+ ++... . ......
T Consensus 101 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 179 (343)
T 1ri6_A 101 GSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG 179 (343)
T ss_dssp EETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCC
T ss_pred EecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCC
Confidence 65 4889999999 4445556666666799999999 888887777 899999999987 65432 1 223457
Q ss_pred eEEEEEccCCCeEEEEe-CCCcEEEEECCC--CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE-EECCCcEEEE
Q 004410 473 VSAVCYCPDGKGGIVGT-MTGNCRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV-TSADSLVRVL 548 (755)
Q Consensus 473 V~~v~~spdg~~la~gs-~dg~I~iwD~~~--~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s-~s~Dg~I~iw 548 (755)
+..++|+|+|++|++++ .++.|.+||+.. +.+..................+..++|+| ++++|++ ...++.|.+|
T Consensus 180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~ 258 (343)
T 1ri6_A 180 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVF 258 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCEEEEE
Confidence 88999999999776655 789999999953 43321111111110111234677899999 7776664 4579999999
Q ss_pred ECCc--ceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 004410 549 CGEN--VVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYS 595 (755)
Q Consensus 549 d~~~--~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~ 595 (755)
+... ...........+ ..+..++|+|+|++|++++ .|+.|.+|+++
T Consensus 259 d~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 259 SVSEDGSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTSCCEEEEEEEECS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEcCCCCceEEeeeecCC-CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9873 222222221223 3488999999999998888 68999999665
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=2.5e-21 Score=230.00 Aligned_cols=283 Identities=11% Similarity=0.033 Sum_probs=206.9
Q ss_pred ccCcceeecCCCCeeEEeeC-CC-----eEEEEECCCCcccccccccceeeeccc------------------------c
Q 004410 236 DRHGSATLKPGDHELTLGQR-MR-----RVRVHPVKKQSRELSSLYTGQEFLAHE------------------------G 285 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~-dg-----~V~Vw~~~~~~~~~~~~~~~~~l~~H~------------------------~ 285 (755)
..+..++|+|||++|++++. ++ .|++|+..++... +.+..|. .
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR-------LLVDSKVVLPGTETLSDEEKARRERQRIAAMT 109 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE-------EEECGGGTC--------------------CCE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee-------Eccchhhcccccccccchhhhhhhhhhhcccc
Confidence 34667999999999999988 88 8999998765421 1122221 3
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
.|.+++|||||++|++++. +.|++||+.++...
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~---------------------------------------------- 142 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA---------------------------------------------- 142 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT----------------------------------------------
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc----------------------------------------------
Confidence 4789999999999999886 89999999766100
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEec-CCc-------------
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH-NNY------------- 430 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h-~~~------------- 430 (755)
.+..+..|...+..++|+||| .|++++ ++.|++||+.+++....... ...
T Consensus 143 --------------~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~ 207 (741)
T 2ecf_A 143 --------------AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEE 207 (741)
T ss_dssp --------------SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHH
T ss_pred --------------eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeec
Confidence 011234566789999999999 777776 56999999999887765542 221
Q ss_pred ---EEEEEEeeCCCCEEEEEeCCC---------------------------------cEEEEEcCC-CeEEEec---cCC
Q 004410 431 ---VTSVAFNPVDDNYFISGSIDG---------------------------------KVRIWEVRR-CQVVDYT---DIR 470 (755)
Q Consensus 431 ---V~~i~fsp~d~~~l~sgs~Dg---------------------------------~V~iwdl~~-~~~~~~~---~~~ 470 (755)
+..++|+| |+++|++++.|+ .|++||+.+ ++..... .+.
T Consensus 208 ~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 286 (741)
T 2ecf_A 208 MDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQD 286 (741)
T ss_dssp SCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSS
T ss_pred cccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcc
Confidence 47899999 999999988776 789999988 8766443 466
Q ss_pred cceEEEEEccCCCeEEEEeC-----CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 471 EIVSAVCYCPDGKGGIVGTM-----TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~-----dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
..+..++| |||+.|++++. +..|++||+.+++........ .......+..++|+| +++++++++.|+.+
T Consensus 287 ~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~ 360 (741)
T 2ecf_A 287 IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET----SPTWVPLHNSLRFLD-DGSILWSSERTGFQ 360 (741)
T ss_dssp EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE----CSSCCCCCSCCEECT-TSCEEEEECTTSSC
T ss_pred eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC----CCCcCCcCCceEECC-CCeEEEEecCCCcc
Confidence 78999999 99999998764 567999999998765433221 111111345789999 77788999999988
Q ss_pred EEEECCcceeeEEEeeeccCCceEEE-EEecCCCEEEEE-eCCC--cEEEEEcCC
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFA-TFTSDGKHVVSP-SEDS--NIYIWNYSN 596 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l-~fspdg~~L~sg-s~Dg--~I~iWd~~~ 596 (755)
+||....... ......+...+..+ .|+|+|++|+.. +.|+ .++||++..
T Consensus 361 ~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 361 HLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEEECSSSC--EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 8887652222 22224566778777 599999987654 4455 899999864
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2.3e-20 Score=198.50 Aligned_cols=278 Identities=10% Similarity=0.099 Sum_probs=193.9
Q ss_pred eeecCCCCe-eEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CCcEEEEEccCCee
Q 004410 241 ATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHER 318 (755)
Q Consensus 241 ~~~spdg~~-lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWdv~~~~~ 318 (755)
+.|.+++.. +++...++.|.+||...... ...+..+...+ .++|+|||++|++++. ++.|.+||+.+++.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI-------LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE-------EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce-------eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence 456666664 66778899999999875442 12233455566 9999999997766655 88999999977653
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
. ...+..+.....+++|+|
T Consensus 75 ~-------------------------------------------------------------~~~~~~~~~~~~~~~~s~ 93 (331)
T 3u4y_A 75 K-------------------------------------------------------------VVAIQEGQSSMADVDITP 93 (331)
T ss_dssp E-------------------------------------------------------------EEEEEECSSCCCCEEECT
T ss_pred e-------------------------------------------------------------EEecccCCCCccceEECC
Confidence 0 111223444444589999
Q ss_pred CC-eEEEEeCCC---cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC-EEEEEeCCCc-EEEEEcCCCeEE-----Eec
Q 004410 399 NG-FLLSSSADK---TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGK-VRIWEVRRCQVV-----DYT 467 (755)
Q Consensus 399 ~~-~L~s~s~Dg---~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~-~l~sgs~Dg~-V~iwdl~~~~~~-----~~~ 467 (755)
++ +|+++..++ .|.+||+.+++.+..+.....+.+++|+| +++ ++++...++. |.+|++.....+ ...
T Consensus 94 dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 172 (331)
T 3u4y_A 94 DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI 172 (331)
T ss_dssp TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE
T ss_pred CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccc
Confidence 99 677444442 89999999999999888778889999999 776 4555566688 999998753221 222
Q ss_pred cCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeE---eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CC
Q 004410 468 DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQL---YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-AD 542 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~---~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~D 542 (755)
.....+..++|+|+|+++++++ .++.|++||+.+++. +.... ....+..++|+| ++++++++. .+
T Consensus 173 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~---------~~~~~~~~~~sp-dg~~l~v~~~~~ 242 (331)
T 3u4y_A 173 SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG---------TNNLPGTIVVSR-DGSTVYVLTEST 242 (331)
T ss_dssp CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE---------CSSCCCCEEECT-TSSEEEEECSSE
T ss_pred cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc---------CCCCCceEEECC-CCCEEEEEEcCC
Confidence 4455689999999999776655 688999999998876 32211 235677899999 788666554 57
Q ss_pred CcEEEEECCcceeeEEEeeecc----C---CceEEEEEecCCCEEEEEeC-CCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRV----A---GSQMFATFTSDGKHVVSPSE-DSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~----~---~~v~~l~fspdg~~L~sgs~-Dg~I~iWd~~~~~ 598 (755)
+.|.+||..+...........+ . .....++|+|||++|++++. ++.|.+||+....
T Consensus 243 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 8899999887554322211111 1 12245899999999876665 5699999997654
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=2.4e-20 Score=230.15 Aligned_cols=333 Identities=10% Similarity=0.017 Sum_probs=232.5
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCC------CeEEEEECCCCcccccccccceeeecccccE-------EEEEEecCC
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRM------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSI-------LTMKFSLDG 296 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~d------g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V-------~~l~fspdg 296 (755)
.+..|...+.+++|||||++||+++.+ ..|++|+...+. .+.+..|...+ ..++|+|||
T Consensus 47 ~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~--------~~~lt~~~~~~~~~~~~~~~~~~SpDg 118 (1045)
T 1k32_A 47 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--------IKRITYFSGKSTGRRMFTDVAGFDPDG 118 (1045)
T ss_dssp EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--------EEECCCCCEEEETTEECSEEEEECTTC
T ss_pred EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC--------eEEcccCCCcccccccccccccCCCCC
Confidence 344556667789999999999987543 478999976532 23467788888 999999999
Q ss_pred CEEEEEcCC------CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEee-----------------------
Q 004410 297 QYLASGGED------GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDV----------------------- 347 (755)
Q Consensus 297 ~~LaSgs~D------g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------- 347 (755)
+++++++.+ ..|++|++.++....... . ....+.|.+ + ++....
T Consensus 119 ~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~--~~~~~~~sp-G---~l~~~~~~~~~~~~~~~~g~~~~~lw~~~ 191 (1045)
T 1k32_A 119 NLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-G--PATHILFAD-G---RRVIGRNTFELPHWKGYRGGTRGKIWIEV 191 (1045)
T ss_dssp CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-C--SCSEEEEET-T---EEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred EEEEEECCcCCCcccceEEEEECCCCCeEEecC-C--CcceeeeCC-C---EEEEeccCCCccccccccCCCcCCEEEEC
Confidence 988888754 358888887776432211 1 112223332 1 111100
Q ss_pred cCccee----------------eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCc
Q 004410 348 DKEKID----------------KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT 410 (755)
Q Consensus 348 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~ 410 (755)
...... ....+....++...+|.. .........+..|. .+..++|+|+| .|+++ .++.
T Consensus 192 ~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~---~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~ 266 (1045)
T 1k32_A 192 NSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYST---DLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGS 266 (1045)
T ss_dssp ETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEE---ETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTE
T ss_pred CCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEE---eCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCE
Confidence 000000 000111111222222211 11123344555554 46677999999 67766 5899
Q ss_pred EEEEeCCCCeEEEEEe------------cCCcEEEEEEe-eCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc-ceEEE
Q 004410 411 VRLWQVGIDRCLRVFS------------HNNYVTSVAFN-PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE-IVSAV 476 (755)
Q Consensus 411 V~iWdl~s~~~~~~~~------------h~~~V~~i~fs-p~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~-~V~~v 476 (755)
|++||+...+.. .+. |...+.+++|+ | ++++|++++ ++.|++|++.++....+..+.. .+..+
T Consensus 267 i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1045)
T 1k32_A 267 IYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRR 343 (1045)
T ss_dssp EEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEE
T ss_pred EEEecCCceEee-eeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEee
Confidence 999999555443 432 23478999999 9 999888887 8899999999988887777777 89999
Q ss_pred EEccCCCeEEEEeCCCcEE-EEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee
Q 004410 477 CYCPDGKGGIVGTMTGNCR-FYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG 555 (755)
Q Consensus 477 ~~spdg~~la~gs~dg~I~-iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~ 555 (755)
+|+ ||+.|+.++.++.+. +||+.++.... + ..+...+..++|+| ++++|++++.++.|++||..+...
T Consensus 344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-----l----~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~ 412 (1045)
T 1k32_A 344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-----F----EENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKP 412 (1045)
T ss_dssp CSS-SEEEEEEEETTEEEEEEEETTTCCEEE-----C----CCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE
T ss_pred eEc-CCCeEEEEECCCceEEEEECCCCCceE-----e----cCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCce
Confidence 999 999999999888898 99998876432 1 13456899999999 999999999999999999987654
Q ss_pred eEEEeeeccCCceEEEEEecCCCEEEEEeCCC----------cEEEEEcCCCC
Q 004410 556 KFKASAFRVAGSQMFATFTSDGKHVVSPSEDS----------NIYIWNYSNQD 598 (755)
Q Consensus 556 ~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg----------~I~iWd~~~~~ 598 (755)
.... ..|...+..++|+|||++|++++.++ .|++||+.+++
T Consensus 413 ~~~~--~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 413 TVIE--RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEEE--ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EEec--cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 4433 46788889999999999999887754 89999998875
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.1e-20 Score=196.08 Aligned_cols=254 Identities=15% Similarity=0.117 Sum_probs=188.1
Q ss_pred EeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC-CeeeeeeecCCCCCc
Q 004410 252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDGFDVQDTDPS 330 (755)
Q Consensus 252 sgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~-~~~~~~~~~~~~~~~ 330 (755)
.++.++.|++|+...... ..+..|.+.|.+++|+|||++|++++ ++.|++||+.+ ++....
T Consensus 17 ~~~~~~~i~~~d~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~--------- 78 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM--------RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV--------- 78 (297)
T ss_dssp -CCCCEEEEEEETTTTEE--------EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC---------
T ss_pred CCCcceeEEEEeCCCCce--------eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe---------
Confidence 345789999999875432 23566889999999999999999987 78999999977 543211
Q ss_pred eeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC-CCCEEEEEEcCCC-eEEEEe--
Q 004410 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDLSWSKNG-FLLSSS-- 406 (755)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~l~~s~~~-~L~s~s-- 406 (755)
..+| ...|.+++|+|++ .|++++
T Consensus 79 -----------------------------------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~ 105 (297)
T 2ojh_A 79 -----------------------------------------------------DTGFATICNNDHGISPDGALYAISDKV 105 (297)
T ss_dssp -----------------------------------------------------CCTTCCCBCSCCEECTTSSEEEEEECT
T ss_pred -----------------------------------------------------ccccccccccceEECCCCCEEEEEEeC
Confidence 1122 3567889999999 888887
Q ss_pred CCCcEEEE--eCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCcEEEEEc--CCCeEEEeccCCcceEEEEEccC
Q 004410 407 ADKTVRLW--QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEV--RRCQVVDYTDIREIVSAVCYCPD 481 (755)
Q Consensus 407 ~Dg~V~iW--dl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~V~iwdl--~~~~~~~~~~~~~~V~~v~~spd 481 (755)
.++.+.|| ++.+++ ...+.+...+..++|+| ++++|+ ++..++.++||++ .+++...+..+...+.+++|+|+
T Consensus 106 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d 183 (297)
T 2ojh_A 106 EFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPD 183 (297)
T ss_dssp TTSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTT
T ss_pred CCCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCC
Confidence 33445555 555555 34454555699999999 888776 7888999999985 55667777778889999999999
Q ss_pred CCeEEEEe-CCCcEEEEECC-CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-----------CcEEEE
Q 004410 482 GKGGIVGT-MTGNCRFYDIK-DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-----------SLVRVL 548 (755)
Q Consensus 482 g~~la~gs-~dg~I~iwD~~-~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-----------g~I~iw 548 (755)
|+.|++++ .++.+++|++. .+..... ...+...+..++|+| ++++|++++.+ +.|.+|
T Consensus 184 g~~l~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~ 254 (297)
T 2ojh_A 184 GRWIYFNSSRTGQMQIWRVRVDGSSVER--------ITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLM 254 (297)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSSCEEE--------CCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred CCEEEEEecCCCCccEEEECCCCCCcEE--------EecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEE
Confidence 99888766 58899999875 3322221 122345788999999 88888887765 569999
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
|..+...........|...+..++|+|+|++|++++.|.
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 255 DMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 988755444333346778899999999999999887664
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=2.4e-20 Score=198.09 Aligned_cols=271 Identities=11% Similarity=0.115 Sum_probs=198.2
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeee-cccc-cEEEEEEecCCCEE-EEEcCCCcEEEEEccCCeeeeeeec
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEG-SILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~-~H~~-~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
++|++++.++.|.+||...... .+.+. ++.. .+..++|+|||++| +++..++.|.+||+.+++.+..+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcE-------EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 4788999999999999865432 12222 2222 47889999999765 5566788999999988765543321
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~ 403 (755)
... ..|...+..++|+|++ +|+
T Consensus 75 ~~~---------------------------------------------------------~~~~~~~~~~~~s~dg~~l~ 97 (337)
T 1pby_B 75 STP---------------------------------------------------------EERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp CBT---------------------------------------------------------TEEEECTTCEEECTTSSEEE
T ss_pred CCc---------------------------------------------------------ccccccccceEECCCCCEEE
Confidence 100 0011234568999999 777
Q ss_pred EEe------------CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc
Q 004410 404 SSS------------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (755)
Q Consensus 404 s~s------------~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~ 471 (755)
++. .++.|.+||+.+++.+..+.....+.+++|+| ++++|+++ ++.|++||+.+++.+.......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred EEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence 775 57999999999999988887777889999999 88888777 6899999999998774333222
Q ss_pred ceEEEEEccCCCeEEEEeCCC------------------------cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 472 IVSAVCYCPDGKGGIVGTMTG------------------------NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg------------------------~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
....+.|+|+|+.+++....+ .|.+||+.+++.. .... ..+...+.+++
T Consensus 175 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~------~~~~~~~~~~~ 247 (337)
T 1pby_B 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV------RIMDVFYFSTA 247 (337)
T ss_dssp TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE------EECSSCEEEEE
T ss_pred cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec------CCCCCceeeEE
Confidence 112347899998776654333 4689999998765 2221 12335788999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|+| ++++++++ ++.|.+||..+....... .....+.+++|+|+|++|++++.|+.|++||+.+++
T Consensus 248 ~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 248 VNP-AKTRAFGA--YNVLESFDLEKNASIKRV---PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECT-TSSEEEEE--ESEEEEEETTTTEEEEEE---ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred ECC-CCCEEEEe--CCeEEEEECCCCcCccee---cCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 999 88888887 799999998875443332 233567899999999999999999999999998876
No 136
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.9e-19 Score=193.20 Aligned_cols=274 Identities=11% Similarity=0.116 Sum_probs=183.5
Q ss_pred CCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC---CCcEEEEEccCCeeeeeeecCCCCCce
Q 004410 255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSC 331 (755)
Q Consensus 255 ~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~ 331 (755)
.++.|.+|.+......+..+ ....+...+..++|+|||+ |++++. ++.|++|++.++...
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------ 76 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------ 76 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred CCCCEEEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence 35678888876433222211 2234556788899999999 555544 689999999665421
Q ss_pred eEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe-CCC
Q 004410 332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADK 409 (755)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s-~Dg 409 (755)
.+..+..+...+..++|+|++ +|++++ .++
T Consensus 77 ------------------------------------------------~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 77 ------------------------------------------------KLNTVVAPGTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp ------------------------------------------------EEEEEEEESCCCSEEEEETTTTEEEEEETTTT
T ss_pred ------------------------------------------------EeeeeecCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 012223355667889999999 777777 789
Q ss_pred cEEEEeCC-CC--eEEEEEecC----------CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC-CCeEEEe----ccCCc
Q 004410 410 TVRLWQVG-ID--RCLRVFSHN----------NYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVDY----TDIRE 471 (755)
Q Consensus 410 ~V~iWdl~-s~--~~~~~~~h~----------~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~-~~~~~~~----~~~~~ 471 (755)
.|.+|++. .+ ..+..+.+. ..+.+++|+| +++++++...++.|++|++. ++++... .....
T Consensus 109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF 187 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence 99999996 33 333333322 2488999999 88877777778999999998 5544321 22234
Q ss_pred ceEEEEEccCCCeEEE-EeCCCcEEEEECCC--CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE-EEEECCCcEEE
Q 004410 472 IVSAVCYCPDGKGGIV-GTMTGNCRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV-IVTSADSLVRV 547 (755)
Q Consensus 472 ~V~~v~~spdg~~la~-gs~dg~I~iwD~~~--~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l-~s~s~Dg~I~i 547 (755)
.+..++|+|||++|++ +..++.|.+|++.. +++.....+............+..++|+| ++++| ++...++.|.+
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEE
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEE
Confidence 6788999999997766 45678999999874 55432211111111111124688999999 77766 55667899999
Q ss_pred EECCcc-eeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-CcEEEEEcC
Q 004410 548 LCGENV-VGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-SNIYIWNYS 595 (755)
Q Consensus 548 wd~~~~-~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-g~I~iWd~~ 595 (755)
|++... ..........+...+..++|+|||++|++++.+ +.|.+|+++
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 267 FAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 998632 222222223345567899999999999888765 899999664
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=3.4e-20 Score=219.41 Aligned_cols=280 Identities=10% Similarity=0.065 Sum_probs=196.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccc---cEEEEEEecCCCEEEEEcCC---------
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGED--------- 305 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~fspdg~~LaSgs~D--------- 305 (755)
..+++|+|||+++++ +.||+|++|+..++.. .+.+.+|.. .|.+++|||||++||+++.+
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-------EEEeccccccccccceEEECCCCCEEEEEecCccceeecce
Confidence 456899999998776 6899999999765432 233445554 49999999999999999765
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.|++||+.+++. ..+ ....
T Consensus 91 ~~i~~~d~~~~~~-~~l-----------------------------------------------------------~~~~ 110 (723)
T 1xfd_A 91 GYYVLSKIPHGDP-QSL-----------------------------------------------------------DPPE 110 (723)
T ss_dssp SEEEEEESSSCCC-EEC-----------------------------------------------------------CCTT
T ss_pred eeEEEEECCCCce-Eec-----------------------------------------------------------cCCc
Confidence 6788999987753 111 1112
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCc------------------EEEEEEeeCCCCEEE
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY------------------VTSVAFNPVDDNYFI 445 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~------------------V~~i~fsp~d~~~l~ 445 (755)
+|...+..++|+||| .|++++. +.|++||+.+++...... +... +.+++|+| |+++|+
T Consensus 111 ~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la 188 (723)
T 1xfd_A 111 VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLA 188 (723)
T ss_dssp CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEE
T ss_pred cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEE
Confidence 455567889999999 8887776 799999999988776654 2332 37899999 999999
Q ss_pred EEeCCC----------------------------------cEEEEEcCCCeE-EEeccC------CcceEEEEEccCCCe
Q 004410 446 SGSIDG----------------------------------KVRIWEVRRCQV-VDYTDI------REIVSAVCYCPDGKG 484 (755)
Q Consensus 446 sgs~Dg----------------------------------~V~iwdl~~~~~-~~~~~~------~~~V~~v~~spdg~~ 484 (755)
+++.|+ .|++||+.+++. ..+..+ ...+..++|+|||+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~ 268 (723)
T 1xfd_A 189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV 268 (723)
T ss_dssp EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence 887653 799999998874 344433 567899999999998
Q ss_pred EEEEeCC----CcEEEEECCCCeEeeeeeEEecccccCCCCCe----EEEEEcCCCCCEEEE--EECCC------cEEEE
Q 004410 485 GIVGTMT----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI----TGFQFSPSDPSKVIV--TSADS------LVRVL 548 (755)
Q Consensus 485 la~gs~d----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I----~~v~fsp~d~~~l~s--~s~Dg------~I~iw 548 (755)
|++.... ..|++||+.+++........ +...+ ..++|+| +++.|+. +..++ .|.+|
T Consensus 269 l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~ 340 (723)
T 1xfd_A 269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDE-------SEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVS 340 (723)
T ss_dssp EEEEEETTSCEEEEEEEETTTCCEEEEEEEE-------CSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred EEEEEcCCCCeEEEEEEeCCCCcceEEEEec-------cCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEE
Confidence 8776543 56999999988765432211 11122 3679999 6665543 45666 46667
Q ss_pred E-CCccee--eEEEeeeccCCceEE-EEEecCCCEEEEEeCC---CcEEEEEcCCC
Q 004410 549 C-GENVVG--KFKASAFRVAGSQMF-ATFTSDGKHVVSPSED---SNIYIWNYSNQ 597 (755)
Q Consensus 549 d-~~~~~~--~~~~~~~~~~~~v~~-l~fspdg~~L~sgs~D---g~I~iWd~~~~ 597 (755)
| ...... .... ......+.. ++|+|||++|+..+.+ +.++||+++..
T Consensus 341 d~~~~~~~~~~~~l--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 341 SSQPNSSNDNIQSI--TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp CSSCCSSSCCCCBS--CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred eccCCCCccceeEe--ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 6 232220 1111 222333444 6999999999876665 78999998754
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=4.7e-19 Score=189.74 Aligned_cols=276 Identities=9% Similarity=0.056 Sum_probs=202.0
Q ss_pred ccCcceeecCCCCeeEEeeC-------CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEE-EEEcCCCc
Q 004410 236 DRHGSATLKPGDHELTLGQR-------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGT 307 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~-------dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L-aSgs~Dg~ 307 (755)
.....++++|+++.+++++. ++.|.+||...... .+.+. +...+..++|+|+|++| ++...++.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-------~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-------TQAIH-NDLKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-------EEEEE-ESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-------EEEEe-cCCCcceEEECCCCCEEEEEecCCCE
Confidence 34556999999998887763 56899999765432 12222 23447789999999955 45566899
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|.+||+.+++.+..+....... + -...
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~--------------------------------------------------~---~~~~ 139 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKR--------------------------------------------------T---EEVR 139 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCC--------------------------------------------------C---SSCC
T ss_pred EEEEeCCCCeeEEEEecCCCcc--------------------------------------------------c---cccC
Confidence 9999998887655443211100 0 0001
Q ss_pred CCCEEEEEEcCCC-eEEEEe--CCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 388 SSEVLDLSWSKNG-FLLSSS--ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s--~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
...+.+++|+|++ .+++++ .++.|.+||+.+++.+..+. +...+.+++|+| +++++++++.++.|.+||+.+++.
T Consensus 140 ~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~ 218 (353)
T 3vgz_A 140 PLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKI 218 (353)
T ss_dssp CCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEE
T ss_pred CCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeE
Confidence 1236789999998 566555 47899999999999999887 667789999999 999999999999999999999987
Q ss_pred EEecc-----CCcceEEEEEccCCCeEEEEeCC-CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 464 VDYTD-----IREIVSAVCYCPDGKGGIVGTMT-GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 464 ~~~~~-----~~~~V~~v~~spdg~~la~gs~d-g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
+.... +...+..++|+|+|+++++++.+ +.|.+||+.+++....... .....++|+| ++++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------~~~~~~~~s~-dg~~l~ 287 (353)
T 3vgz_A 219 LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA----------PESLAVLFNP-ARNEAY 287 (353)
T ss_dssp EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC----------SSCCCEEEET-TTTEEE
T ss_pred EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc----------CCCceEEECC-CCCEEE
Confidence 74332 34568889999999988777654 8999999999887654331 1124689999 677555
Q ss_pred EEE-CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 538 VTS-ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 538 s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
++. .++.|.+||..+....... .....+..++|+|||++|+.+..++
T Consensus 288 v~~~~~~~v~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 288 VTHRQAGKVSVIDAKSYKVVKTF---DTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEE---ECCSEEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCeEEEEECCCCeEEEEE---ecCCCCCeEEEcCCCCEEEEEEccc
Confidence 555 7899999998876544333 2345778999999999887776553
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=6.3e-20 Score=216.66 Aligned_cols=290 Identities=12% Similarity=0.106 Sum_probs=201.5
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
..+.+++|+|| +.++.+ .++.|++|+...+.. ..+..|.+.+.+++|||||++||++ .|+.|++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~ 150 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV--------TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK 150 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE--------EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce--------EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence 34667999999 655555 359999999865431 2344567778899999999999995 689999999987
Q ss_pred -----CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 316 -----HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 316 -----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
++........... + .+ +.+ ....+...
T Consensus 151 ~~~~~g~~~~~~~~~~~~-------------------------------------~-~~--------g~~--~~~ee~~~ 182 (706)
T 2z3z_A 151 LGEGMSRAIAVTIDGTET-------------------------------------L-VY--------GQA--VHQREFGI 182 (706)
T ss_dssp TTSCCCCCEESCSCCBTT-------------------------------------E-EE--------SSC--CGGGCTTC
T ss_pred ccccCCCcEEeccCCCCC-------------------------------------e-Ec--------ccc--hhhhhcCC
Confidence 5533211110000 0 00 000 11223345
Q ss_pred EEEEEEcCCC-eEEEEe---------------------------------CCCcEEEEeCCCCeEEEEE---ecCCcEEE
Q 004410 391 VLDLSWSKNG-FLLSSS---------------------------------ADKTVRLWQVGIDRCLRVF---SHNNYVTS 433 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s---------------------------------~Dg~V~iWdl~s~~~~~~~---~h~~~V~~ 433 (755)
+.+++|+||| +|++++ .+..|++||+.+++..... .|...+.+
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 6789999999 888877 4467999999999876655 36678999
Q ss_pred EEEeeCCCCEEEEEeCCC-----cEEEEEcCCC-eEEEec--cCCc---ceEEEEEcc--CCCeEEEEeCCCcEEEEECC
Q 004410 434 VAFNPVDDNYFISGSIDG-----KVRIWEVRRC-QVVDYT--DIRE---IVSAVCYCP--DGKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~-~~~~~~--~~~~---~V~~v~~sp--dg~~la~gs~dg~I~iwD~~ 500 (755)
++|+| ++++|++++.++ .|++||+.++ ...... .... .+..++|+| ||++|+++..+|.++||++.
T Consensus 263 ~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 263 LSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp EEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred EEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 99999 999999888776 8999999998 444332 1221 246789999 99999999999999998876
Q ss_pred -CCeEeeeeeEEecccccCCCCCeEE-EEEcCCCCCEEEEEEC-CC----cEEEEECCcceeeEEEeeeccCCceEEEEE
Q 004410 501 -DNQLYQQNQICLQGKKKLPGKRITG-FQFSPSDPSKVIVTSA-DS----LVRVLCGENVVGKFKASAFRVAGSQMFATF 573 (755)
Q Consensus 501 -~~~~~~~~~~~~~~~~~~~~~~I~~-v~fsp~d~~~l~s~s~-Dg----~I~iwd~~~~~~~~~~~~~~~~~~v~~l~f 573 (755)
++..... + ..+...+.. ++|+| +++.|+.++. ++ .|..||..+.. ... ..+...+..++|
T Consensus 342 ~~~~~~~~----l----~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~--l~~~~~~~~~~~ 408 (706)
T 2z3z_A 342 TTGRLIRQ----V----TKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK--TKD--LTPESGMHRTQL 408 (706)
T ss_dssp TTSCEEEE----C----CCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC--CEE--SCCSSSEEEEEE
T ss_pred CCCCEEEe----c----CCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC--cee--ccCCCceEEEEE
Confidence 4433321 1 123445766 79999 7776665554 44 56666665533 222 336677899999
Q ss_pred ecCCCEEEEEeCC----CcEEEEEcCCCC
Q 004410 574 TSDGKHVVSPSED----SNIYIWNYSNQD 598 (755)
Q Consensus 574 spdg~~L~sgs~D----g~I~iWd~~~~~ 598 (755)
+|||++|+.+..+ +.|++||+.+++
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 9999998876544 469999998775
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=1.6e-19 Score=222.89 Aligned_cols=280 Identities=13% Similarity=0.049 Sum_probs=209.6
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC-CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
.+.+|.+.+.++.|+++ .++++++.|+.++||.+.. +.....+..+. ......|.+++...+..
T Consensus 198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~------------- 262 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS------------- 262 (1045)
T ss_dssp EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-------------
T ss_pred ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-------------
Confidence 45678999999999998 7777888899999998764 33333333322 23344555554322111
Q ss_pred eeecCCceEEEeCCcceeccCccceEecC-----------CCCCEEEEEEc-CCC-eEEEEeCCCcEEEEeCCCCeEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQG-----------HSSEVLDLSWS-KNG-FLLSSSADKTVRLWQVGIDRCLRV 424 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------h~~~V~~l~~s-~~~-~L~s~s~Dg~V~iWdl~s~~~~~~ 424 (755)
.+..+.+|+... ..+..+.+ |...+..++|+ |+| .|++++ ++.|++|++..+.....
T Consensus 263 ----~~~~i~~~d~~~-----~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~ 332 (1045)
T 1k32_A 263 ----KGGSIYIFNPDT-----EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV 332 (1045)
T ss_dssp ----ETTEEEEECTTT-----CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC
T ss_pred ----eCCEEEEecCCc-----eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc
Confidence 133444444311 11222222 45578999999 999 777777 88999999998887665
Q ss_pred EecCC-cEEEEEEeeCCCCEEEEEeCCCcEE-EEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCC
Q 004410 425 FSHNN-YVTSVAFNPVDDNYFISGSIDGKVR-IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (755)
Q Consensus 425 ~~h~~-~V~~i~fsp~d~~~l~sgs~Dg~V~-iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~ 502 (755)
..|.. .+..++|+ +++.|+.++.++.|. +||+.+++...+..+...+..++|+|||++|++++.++.|++||+.++
T Consensus 333 ~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg 410 (1045)
T 1k32_A 333 PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 410 (1045)
T ss_dssp SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred cCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence 56777 89999998 788888888888899 999999887777777788999999999999999999999999999988
Q ss_pred eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC----------cEEEEECCcceeeEEEeeeccCCceEEEE
Q 004410 503 QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS----------LVRVLCGENVVGKFKASAFRVAGSQMFAT 572 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg----------~I~iwd~~~~~~~~~~~~~~~~~~v~~l~ 572 (755)
+..... ..+...+..++|+| ++++|++++.++ .|++||..+.. .. ....+...+..++
T Consensus 411 ~~~~~~--------~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~--~l~~~~~~~~~~~ 478 (1045)
T 1k32_A 411 KPTVIE--------RSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IF--AATTENSHDYAPA 478 (1045)
T ss_dssp CEEEEE--------ECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EE--ECSCSSSBEEEEE
T ss_pred ceEEec--------cCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EE--EeeCCCcccCCce
Confidence 765421 12556788999999 888888877654 89999988754 22 2256777888999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 573 FTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 573 fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
|+|||++|++++.++...+|+....
T Consensus 479 ~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 479 FDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp ECTTSCEEEEEESCCCCCEECSSSS
T ss_pred EcCCCCEEEEEecccCCcCcchhcc
Confidence 9999999999999999999987643
No 141
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.85 E-value=2.4e-19 Score=204.70 Aligned_cols=294 Identities=12% Similarity=0.089 Sum_probs=205.9
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEEC--CCCcccccccccceeeecccccEEEEEEec----CCCEEEEEcC-CCcEEE
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPV--KKQSRELSSLYTGQEFLAHEGSILTMKFSL----DGQYLASGGE-DGTVRV 310 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~--~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp----dg~~LaSgs~-Dg~I~v 310 (755)
+..++|+|||++|++++.+++|++||+ .+.. ..+++. +...+..++|+| ||++|++++. +++|.|
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v 252 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 252 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEE
Confidence 456899999999999999999999998 3322 223444 345679999999 9999999985 899999
Q ss_pred EEccCCeeeeeeecCCC-----------CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCc
Q 004410 311 WKVIEHERLDGFDVQDT-----------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (755)
||..+++.+..+..... .+..+.+.+.+.. .......++.+.+++.......
T Consensus 253 ~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~---------------~~vs~~~~g~i~vvd~~~~~~l-- 315 (543)
T 1nir_A 253 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE---------------FIVNVKETGKVLLVNYKDIDNL-- 315 (543)
T ss_dssp EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE---------------EEEEETTTTEEEEEECTTSSSC--
T ss_pred EeccccccceeecccCcccCccccccCCceEEEEECCCCCE---------------EEEEECCCCeEEEEEecCCCcc--
Confidence 99999998887765321 1222333322211 1223334455555554332111
Q ss_pred cceEecCCCCCEEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEe-CCC
Q 004410 380 PLHEFQGHSSEVLDLSWSKNG-FLLSS-SADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGS-IDG 451 (755)
Q Consensus 380 ~~~~~~gh~~~V~~l~~s~~~-~L~s~-s~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs-~Dg 451 (755)
.+..+ .+...+.++.|+|++ +|+++ ..+++|.+||+.+++++..+. |......+ ++|..+.+++++. .|+
T Consensus 316 ~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~ 393 (543)
T 1nir_A 316 TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDG 393 (543)
T ss_dssp EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSS
T ss_pred eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCc
Confidence 01122 356678889999999 55554 568999999999999998885 55444444 5773366777775 589
Q ss_pred cEEEEEcCC-------CeEE-EeccCCcceEEEEEccCCCeEEEEe-------CCCcEEEEECCCCeEeee-eeEEeccc
Q 004410 452 KVRIWEVRR-------CQVV-DYTDIREIVSAVCYCPDGKGGIVGT-------MTGNCRFYDIKDNQLYQQ-NQICLQGK 515 (755)
Q Consensus 452 ~V~iwdl~~-------~~~~-~~~~~~~~V~~v~~spdg~~la~gs-------~dg~I~iwD~~~~~~~~~-~~~~~~~~ 515 (755)
+|.+||+.+ .+++ .+..+...+..++++|+|++|++++ .+++|.+||+.+++...+ +.+.-...
T Consensus 394 ~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~ 473 (543)
T 1nir_A 394 SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD 473 (543)
T ss_dssp EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC
T ss_pred eEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcc
Confidence 999999988 6776 4556667788999999999999987 377999999998876521 11100000
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEE-----CCCcEEEEECCcceeeEEE
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTS-----ADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s-----~Dg~I~iwd~~~~~~~~~~ 559 (755)
...+...+..+.|+| +++.++++. .++.|.|||..+.......
T Consensus 474 ~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 474 LGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp CCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred cCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeEEEEECCCceEEEee
Confidence 123467899999999 888887663 3799999999987665544
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=1.3e-19 Score=215.21 Aligned_cols=295 Identities=10% Similarity=0.074 Sum_probs=202.3
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
..+..++|+|||++|++++. +.|++|++..+... ..+.+..|...+.+++|||||++||+++ ++.|++||+.+
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-----~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-----AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT-----SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc-----eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence 34667999999999999887 99999998764100 1123566788899999999999999987 46899999988
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
++........... +. .+ ...+ + .......+..++
T Consensus 182 g~~~~~~~~~~~~---~~-------------------------~g----------~~~~------v--~~~~~~~~~~~~ 215 (741)
T 2ecf_A 182 GRQMQLTADGSTT---IG-------------------------NG----------IAEF------V--ADEEMDRHTGYW 215 (741)
T ss_dssp TEEEECCCCCCSS---EE-------------------------ES----------CCCH------H--HHHHSCCCCSEE
T ss_pred CCEEEeccCCccc---ee-------------------------cc----------ccce------e--eeeccccccceE
Confidence 7643221110000 00 00 0000 0 000112356799
Q ss_pred EcCCC-eEEEEeCCC---------------------------------cEEEEeCCC-CeEEEEE---ecCCcEEEEEEe
Q 004410 396 WSKNG-FLLSSSADK---------------------------------TVRLWQVGI-DRCLRVF---SHNNYVTSVAFN 437 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg---------------------------------~V~iWdl~s-~~~~~~~---~h~~~V~~i~fs 437 (755)
|+||| .|++++.|+ .|++||+.+ ++..... .|...+..++|
T Consensus 216 ~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~- 294 (741)
T 2ecf_A 216 WAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW- 294 (741)
T ss_dssp ECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-
T ss_pred ECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-
Confidence 99999 888887765 799999998 8766554 36788999999
Q ss_pred eCCCCEEEEEeC-----CCcEEEEEcCCCeEEEeccCCc-----ceEEEEEccCCCeEEEEeCCCcEEEEECC-CCeEee
Q 004410 438 PVDDNYFISGSI-----DGKVRIWEVRRCQVVDYTDIRE-----IVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQLYQ 506 (755)
Q Consensus 438 p~d~~~l~sgs~-----Dg~V~iwdl~~~~~~~~~~~~~-----~V~~v~~spdg~~la~gs~dg~I~iwD~~-~~~~~~ 506 (755)
| ++++|++++. +..|++||+.+++......... .+..++|+|||++++++..+|.++||.+. .+. ..
T Consensus 295 p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~ 372 (741)
T 2ecf_A 295 R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA 372 (741)
T ss_dssp E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE
T ss_pred C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-ee
Confidence 9 9998887664 5679999999988764433222 35688999999988999999987777665 222 22
Q ss_pred eeeEEecccccCCCCCeEEE-EEcCCCCCEEE-EEECCC--cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE
Q 004410 507 QNQICLQGKKKLPGKRITGF-QFSPSDPSKVI-VTSADS--LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v-~fsp~d~~~l~-s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s 582 (755)
. ...+...+..+ .|+| +++.|+ +++.++ .++||+.......... ......+..++|+|||++|+.
T Consensus 373 ~--------l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~--l~~~~~~~~~~~spdg~~l~~ 441 (741)
T 2ecf_A 373 A--------LTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQR--LSKAPGMHSASFARNASVYVD 441 (741)
T ss_dssp E--------SCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEE--CCCSCSEEEEEECTTSSEEEE
T ss_pred e--------eeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeee--cccCCCceEEEECCCCCEEEE
Confidence 1 12234567777 5999 666665 455555 8999987532221222 223567889999999999887
Q ss_pred EeCC----CcEEEEEcCCC
Q 004410 583 PSED----SNIYIWNYSNQ 597 (755)
Q Consensus 583 gs~D----g~I~iWd~~~~ 597 (755)
...+ ..+++|+...+
T Consensus 442 ~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 442 SWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEETTEEEEEEEEETTSC
T ss_pred EecCCCCCCeEEEEEcCCC
Confidence 6544 46999998654
No 143
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=4.5e-19 Score=196.79 Aligned_cols=212 Identities=14% Similarity=0.095 Sum_probs=153.8
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcc---------cccccccceeeecccccEEEEEEecCCCEEE----EEc
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR---------ELSSLYTGQEFLAHEGSILTMKFSLDGQYLA----SGG 303 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~---------~~~~~~~~~~l~~H~~~V~~l~fspdg~~La----Sgs 303 (755)
....+++++++.++++++.++ ++||+...... .+..... .....|.+.|.+++|+|+|++|| +|+
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ-GLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCC-CEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCc-cccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 456699999999999999888 89987432110 0000111 11234677899999999999999 888
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|+.|+|||+.++.... ...... -..+..
T Consensus 116 ~d~~v~iwd~~~~~~~~-----~~~~~~----------------------------------------------~~~~~~ 144 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEA-----KQQKRP----------------------------------------------FAYHKL 144 (434)
T ss_dssp TEEEEEEEEHHHHHCTT-----CSSCCC----------------------------------------------SEEEEC
T ss_pred CCceEEEEEccccccCC-----cCCcce----------------------------------------------eeeeec
Confidence 99999999986541000 000000 001234
Q ss_pred ecCCCCCEEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 384 FQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
+.+|...|.+++|+|+ + +|++++.||+|++||++++..+... .|...|++++|+| ++++|++|+.||+|++||++.
T Consensus 145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~ 223 (434)
T 2oit_A 145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL 223 (434)
T ss_dssp CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC
T ss_pred cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC
Confidence 5679999999999998 5 8999999999999999998766444 5889999999999 899999999999999999983
Q ss_pred CeEEEecc-------CCcceEEEEEccCCCeEEE-EeCCCc------EEEEECCCC
Q 004410 461 CQVVDYTD-------IREIVSAVCYCPDGKGGIV-GTMTGN------CRFYDIKDN 502 (755)
Q Consensus 461 ~~~~~~~~-------~~~~V~~v~~spdg~~la~-gs~dg~------I~iwD~~~~ 502 (755)
.....+.. |...|.+++|++++.++++ ...+|. +++|++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 32222222 2237999999998877755 334433 899999865
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=1.9e-19 Score=207.72 Aligned_cols=267 Identities=12% Similarity=0.044 Sum_probs=196.9
Q ss_pred cCcceeecCCCCeeEEeeC-CCeEEEEECCCCcccccccccceeeeccc-ccEEEEEEecCCCEEEEEcC---CCcEEEE
Q 004410 237 RHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGE---DGTVRVW 311 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~-dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fspdg~~LaSgs~---Dg~I~vW 311 (755)
.+.+++|+|||+.||+++. +|+++||++..+. .+.+..|. ..|..++|+|| ++|++++. +...+||
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--------~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--------TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--------EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCC--------cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence 4667999999999999877 9999999963322 12344455 68999999999 78887765 5567777
Q ss_pred EccC--CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 312 KVIE--HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 312 dv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
.+.. .... . .+..+ .
T Consensus 94 ~~~~~~~g~~-------------------------------------------------------------~-~l~~~-~ 110 (582)
T 3o4h_A 94 KVNTSRPGEE-------------------------------------------------------------Q-RLEAV-K 110 (582)
T ss_dssp EEETTSTTCC-------------------------------------------------------------E-ECTTS-C
T ss_pred EEeccCCCcc-------------------------------------------------------------c-cccCC-C
Confidence 6543 1100 0 01111 1
Q ss_pred CEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC----CcEEEEEcCCCeE
Q 004410 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID----GKVRIWEVRRCQV 463 (755)
Q Consensus 390 ~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D----g~V~iwdl~~~~~ 463 (755)
.+...+|+|++ .+++.+.++.+.+||+.++++.....+.. .+++|+| |+++|++++.+ +.|++||+.+++.
T Consensus 111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~ 187 (582)
T 3o4h_A 111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGL 187 (582)
T ss_dssp SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence 23345777776 44455555556699999998877766554 8899999 99999988877 7899999999988
Q ss_pred EEeccCCcceEEEEEccCCCeEEEEeCCC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE--------EcCCCC
Q 004410 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ--------FSPSDP 533 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~la~gs~dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~--------fsp~d~ 533 (755)
..+..+...+..++|+|||+.|+++..+| .|++||+.+++.. .. ..+...+..+. |+| ++
T Consensus 188 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~sp-dg 257 (582)
T 3o4h_A 188 RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL--------ELPSKDFSSYRPTAITWLGYLP-DG 257 (582)
T ss_dssp EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC--------CCSCSHHHHHCCSEEEEEEECT-TS
T ss_pred eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec--------cCCCcChhhhhhccccceeEcC-CC
Confidence 88888888999999999999999888888 8999999988765 21 11223344444 999 66
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc---EEEEEcCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN---IYIWNYSN 596 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~---I~iWd~~~ 596 (755)
.++++++.++.++||+. . .... ...+.+.+++|+ +|+++++++.+.. |++|+..+
T Consensus 258 ~~~~~~~~~g~~~l~~~--g--~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 258 RLAVVARREGRSAVFID--G--ERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp CEEEEEEETTEEEEEET--T--EEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred cEEEEEEcCCcEEEEEE--C--Ceec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999999999999998 2 1111 234678899999 9999999888754 77777654
No 145
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=5.2e-18 Score=183.04 Aligned_cols=279 Identities=13% Similarity=0.154 Sum_probs=186.4
Q ss_pred cCCCCeeEEee----CCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC----CcEEEEEccC
Q 004410 244 KPGDHELTLGQ----RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----GTVRVWKVIE 315 (755)
Q Consensus 244 spdg~~lasgs----~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D----g~I~vWdv~~ 315 (755)
.+...+++.|+ .++.|.+|.+......+..+ ..+ |...+..++|+|||++|++++.+ +.|.+|++..
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~---~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPL---SDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEE---EEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEe---ecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence 34445556663 46789999875433222211 222 66778889999999999999886 7999999865
Q ss_pred --CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 316 --HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 316 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
++.. . +.....+......
T Consensus 85 ~~g~~~-~-----------------------------------------------------------~~~~~~~~~~p~~ 104 (361)
T 3scy_A 85 EKGTLH-L-----------------------------------------------------------LNTQKTMGADPCY 104 (361)
T ss_dssp TTTEEE-E-----------------------------------------------------------EEEEECSSSCEEE
T ss_pred CCCcEE-E-----------------------------------------------------------eeEeccCCCCcEE
Confidence 2210 0 1122234455677
Q ss_pred EEEcCCC-eEEEEe-CCCcEEEEeCCCCeEEE----EEec-----------CCcEEEEEEeeCCCCEEEEEe-CCCcEEE
Q 004410 394 LSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLR----VFSH-----------NNYVTSVAFNPVDDNYFISGS-IDGKVRI 455 (755)
Q Consensus 394 l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~~~~----~~~h-----------~~~V~~i~fsp~d~~~l~sgs-~Dg~V~i 455 (755)
+++ ++ +|++++ .++.|.+|++.....+. .+.+ ...+.+++|+| +++++++++ .++.|++
T Consensus 105 ~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v 181 (361)
T 3scy_A 105 LTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHK 181 (361)
T ss_dssp EEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred EEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEE
Confidence 777 55 565555 68899999997543322 1111 23468899999 888665554 5889999
Q ss_pred EEcCCCe-------E-------EEeccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 456 WEVRRCQ-------V-------VDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 456 wdl~~~~-------~-------~~~~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
|++.... + .........+..++|+|||+++++++ .++.|.+||+.++.+.....+.. ...+.
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~---~~~~~ 258 (361)
T 3scy_A 182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA---DTVNA 258 (361)
T ss_dssp EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES---CSSCC
T ss_pred EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec---CCCCC
Confidence 9887432 1 22334455688999999999888877 68999999999876543222211 12233
Q ss_pred CCeEEEEEcCCCCCEEEEEECC--CcEEEEECCc--ceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 004410 521 KRITGFQFSPSDPSKVIVTSAD--SLVRVLCGEN--VVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYS 595 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~D--g~I~iwd~~~--~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~ 595 (755)
.....++|+| ++++|+++..+ +.|.+|++.. ........... ...+..++|+|||++|++++ .++.|.+|+++
T Consensus 259 ~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 259 QGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 4578999999 88888776654 8999999862 22222222122 45678999999999998888 67899997665
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=9.1e-19 Score=206.72 Aligned_cols=280 Identities=10% Similarity=0.078 Sum_probs=191.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc-----------------ccEEEEEEecCCCEEE
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-----------------GSILTMKFSLDGQYLA 300 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-----------------~~V~~l~fspdg~~La 300 (755)
+..+.|. |..++++..++ | +||..++..... .+..|. ..|.+++|+|| ++|+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~------~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~ 96 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT------TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVV 96 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------C------EEEEHHHHHTTC-----------CCCEEEEETTT-TEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE------EeechhHhhhhccchhccccccccCceeEEECCC-CeEE
Confidence 4557788 66667777777 8 999876543101 112222 46999999999 5555
Q ss_pred EEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
.+. ++.|++||+.+++..
T Consensus 97 ~~~-~~~i~~~d~~~~~~~------------------------------------------------------------- 114 (706)
T 2z3z_A 97 LFT-QGGLVGFDMLARKVT------------------------------------------------------------- 114 (706)
T ss_dssp EEE-TTEEEEEETTTTEEE-------------------------------------------------------------
T ss_pred EEE-CCEEEEEECCCCceE-------------------------------------------------------------
Confidence 553 599999999876532
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC-----CeEEEEEe-cCCc--------------EEEEEEeeC
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-----DRCLRVFS-HNNY--------------VTSVAFNPV 439 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-----~~~~~~~~-h~~~--------------V~~i~fsp~ 439 (755)
.+..+...+.+++|+|+| .|++ ..++.|++||+.+ ++...... +... +.++.|+|
T Consensus 115 --~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp- 190 (706)
T 2z3z_A 115 --YLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP- 190 (706)
T ss_dssp --EEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-
T ss_pred --EccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-
Confidence 122344557778999999 7766 4789999999998 77665443 2222 58999999
Q ss_pred CCCEEEEEe---------------------------------CCCcEEEEEcCCCeEEEec---cCCcceEEEEEccCCC
Q 004410 440 DDNYFISGS---------------------------------IDGKVRIWEVRRCQVVDYT---DIREIVSAVCYCPDGK 483 (755)
Q Consensus 440 d~~~l~sgs---------------------------------~Dg~V~iwdl~~~~~~~~~---~~~~~V~~v~~spdg~ 483 (755)
|+++|++++ .+..|++||+.+++..... .+...+.+++|+|||+
T Consensus 191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 270 (706)
T 2z3z_A 191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN 270 (706)
T ss_dssp TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC
Confidence 999999987 4467999999998876544 4556799999999999
Q ss_pred eEEEEeCCC-----cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC-CCCCEEEEEECCCcEEEEECCcceeeE
Q 004410 484 GGIVGTMTG-----NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP-SDPSKVIVTSADSLVRVLCGENVVGKF 557 (755)
Q Consensus 484 ~la~gs~dg-----~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp-~d~~~l~s~s~Dg~I~iwd~~~~~~~~ 557 (755)
.|++++.++ .|++||+.+++....... .........+..++|+| .++++++++..|+.++||.........
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~---~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFV---ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI 347 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEEE---EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE
T ss_pred EEEEEEeCCCCCeeEEEEEECCCCceeeEEEE---ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE
Confidence 999988775 899999999832222111 00111112346789998 245688888899999999875222222
Q ss_pred EEeeeccCCceEE-EEEecCCCEEEEEeCC-C----cEEEEEcCCCC
Q 004410 558 KASAFRVAGSQMF-ATFTSDGKHVVSPSED-S----NIYIWNYSNQD 598 (755)
Q Consensus 558 ~~~~~~~~~~v~~-l~fspdg~~L~sgs~D-g----~I~iWd~~~~~ 598 (755)
.. ...+...+.. ++|+|+|+.|+.++.+ + .|+.||+.+++
T Consensus 348 ~~-l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 348 RQ-VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EE-CCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred Ee-cCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 21 2445666766 7999999988766554 4 67777777664
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=8.5e-18 Score=179.88 Aligned_cols=243 Identities=9% Similarity=0.067 Sum_probs=183.9
Q ss_pred ccccEEEEEEecCCCEEEEEcC-------CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 283 HEGSILTMKFSLDGQYLASGGE-------DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~-------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+..
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------------------------------- 87 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN------------------------------- 87 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-------------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-------------------------------
Confidence 3456889999999998888774 56899999988765433221
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCeEEEEEecCC----
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFSHNN---- 429 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg~V~iWdl~s~~~~~~~~h~~---- 429 (755)
...+..++|++++ .++ +...++.|.+||+.+++.+..+....
T Consensus 88 --------------------------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 135 (353)
T 3vgz_A 88 --------------------------------DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT 135 (353)
T ss_dssp --------------------------------SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC
T ss_pred --------------------------------CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc
Confidence 1224568899998 454 45567999999999999988875321
Q ss_pred ------cEEEEEEeeCCCCEEEEEe--CCCcEEEEEcCCCeEEEecc-CCcceEEEEEccCCCeEEEEeCCCcEEEEECC
Q 004410 430 ------YVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 430 ------~V~~i~fsp~d~~~l~sgs--~Dg~V~iwdl~~~~~~~~~~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~ 500 (755)
.+.+++|+| +++++++++ .++.|.+||+.+++.+.... +...+..++|+|+|+.|++++.++.|.+||+.
T Consensus 136 ~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~ 214 (353)
T 3vgz_A 136 EEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTA 214 (353)
T ss_dssp SSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT
T ss_pred cccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECC
Confidence 278999999 888777665 47899999999998886555 55668899999999999999999999999999
Q ss_pred CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCE
Q 004410 501 DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKH 579 (755)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~ 579 (755)
+++....... ....+...+.+++|+| ++++++++.. ++.|.+||..+........ .. ....++|+|+|++
T Consensus 215 ~~~~~~~~~~----~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~---~~~~~~~s~dg~~ 285 (353)
T 3vgz_A 215 DNKILSRKKL----LDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNILAKVA-AP---ESLAVLFNPARNE 285 (353)
T ss_dssp TTEEEEEEEC----CCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCEEEEEE-CS---SCCCEEEETTTTE
T ss_pred CCeEEEEEEc----CCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEE-cC---CCceEEECCCCCE
Confidence 9987654332 1112345688999999 6776666554 5999999997765444332 11 1256899999997
Q ss_pred EEEEe-CCCcEEEEEcCCCC
Q 004410 580 VVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 580 L~sgs-~Dg~I~iWd~~~~~ 598 (755)
|+.++ .++.|.+||+.+++
T Consensus 286 l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 286 AYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EEEEETTTTEEEEEETTTTE
T ss_pred EEEEECCCCeEEEEECCCCe
Confidence 66665 68999999998876
No 148
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.82 E-value=6.8e-18 Score=179.54 Aligned_cols=269 Identities=14% Similarity=0.185 Sum_probs=177.9
Q ss_pred eccCcceeecCCCCeeEEeeCC-CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CCcEEEEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRM-RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWK 312 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~d-g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWd 312 (755)
...+..++|+|+|++|++++.+ +.|++|++......+. ....+..+. .+..++|+|+|++|++++. ++.|.+|+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 3456679999999988888876 9999999862211111 112333333 7889999999998876654 88899999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+.++..... +..+. ....+.
T Consensus 113 ~~~~~~~~~-----------------------------------------------------------~~~~~-~~~~~~ 132 (343)
T 1ri6_A 113 LEDGLPVGV-----------------------------------------------------------VDVVE-GLDGCH 132 (343)
T ss_dssp EETTEEEEE-----------------------------------------------------------EEEEC-CCTTBC
T ss_pred CCCCccccc-----------------------------------------------------------ccccc-CCCCce
Confidence 853321100 11122 223477
Q ss_pred EEEEcCCC-eEEEEe-CCCcEEEEeCCC-CeEEEE----E--ecCCcEEEEEEeeCCCCEEEEE-eCCCcEEEEEcCC--
Q 004410 393 DLSWSKNG-FLLSSS-ADKTVRLWQVGI-DRCLRV----F--SHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRR-- 460 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s-~Dg~V~iWdl~s-~~~~~~----~--~h~~~V~~i~fsp~d~~~l~sg-s~Dg~V~iwdl~~-- 460 (755)
+++|+|++ .|++++ .++.|++||+.+ ++.... + .....+.+++|+| ++++++++ ..++.|.+|++..
T Consensus 133 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~ 211 (343)
T 1ri6_A 133 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPH 211 (343)
T ss_dssp CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTT
T ss_pred EEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCC
Confidence 89999999 677776 899999999987 655322 2 2456789999999 88866554 4889999999953
Q ss_pred CeE--E-Eec--c-C---CcceEEEEEccCCCeEEEEe-CCCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 461 CQV--V-DYT--D-I---REIVSAVCYCPDGKGGIVGT-MTGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 461 ~~~--~-~~~--~-~---~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
++. . ... . . ...+..++|+|+|++|+++. .++.|.+||+. ++.......+ ..+ ..+..++|
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~-~~~~~~~~ 284 (343)
T 1ri6_A 212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ------PTE-TQPRGFNV 284 (343)
T ss_dssp SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE------ECS-SSCCCEEE
T ss_pred CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee------cCC-CccceEEE
Confidence 332 1 111 1 1 23567899999999887554 78999999998 3332221111 112 23788999
Q ss_pred cCCCCCEEEEEE-CCCcEEEEECC--cceeeEEEeeeccCCceEEEEEecCC
Q 004410 529 SPSDPSKVIVTS-ADSLVRVLCGE--NVVGKFKASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 529 sp~d~~~l~s~s-~Dg~I~iwd~~--~~~~~~~~~~~~~~~~v~~l~fspdg 577 (755)
+| ++++|++++ .++.|.+|+.. +........ ........+++|.++.
T Consensus 285 s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 285 DH-SGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR-YAVGQGPMWVVVNAHE 334 (343)
T ss_dssp CT-TSSEEEEECTTTCEEEEEEEETTTTEEEEEEE-EECSSSCCEEEEEEEC
T ss_pred CC-CCCEEEEecCCCCeEEEEEEcCCCceeeEccc-cccCCCCeeEEEEccc
Confidence 99 788787777 68999999554 332222221 2222445667776654
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=7.6e-18 Score=179.83 Aligned_cols=280 Identities=10% Similarity=0.050 Sum_probs=185.7
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc-ccEEEEEEecCCCEE-EEEcCCCcEEEEEccCCe
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~ 317 (755)
.+++++++.++++++.++.|++||..+... .+.+..+. ..+..++|+|||+++ +++..++.|.+||+.+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE-------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE-------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 467889999999999999999999875432 12233222 247789999999865 455678999999998887
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
....+...... - .+...+..++|+
T Consensus 77 ~~~~~~~~~~~----------------------------------------------------~----~~~~~~~~~~~s 100 (349)
T 1jmx_B 77 NTFHANLSSVP----------------------------------------------------G----EVGRSMYSFAIS 100 (349)
T ss_dssp EEEEEESCCST----------------------------------------------------T----EEEECSSCEEEC
T ss_pred EEEEEEccccc----------------------------------------------------c----cccccccceEEC
Confidence 55433211000 0 001235568999
Q ss_pred CCC-eEEEEeCC------------CcEEEEeCCCC---eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 398 KNG-FLLSSSAD------------KTVRLWQVGID---RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 398 ~~~-~L~s~s~D------------g~V~iWdl~s~---~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
|++ +|++++.+ +.|.+||+.++ +.+..+.+...+.+++|+| +++ +++++ +.|++||+.++
T Consensus 101 pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~ 176 (349)
T 1jmx_B 101 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTG 176 (349)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSC-EEEES--SSEEEECTTTC
T ss_pred CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC-CCc-EEEcc--CcEEEEeCCCC
Confidence 999 77777755 89999999884 4445566666799999999 888 55543 44999999998
Q ss_pred eEEEeccCCc-------------------------ceEEEEEccCCCeEEEEeCCC-cEEEEECCCCeEeeeeeEEeccc
Q 004410 462 QVVDYTDIRE-------------------------IVSAVCYCPDGKGGIVGTMTG-NCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 462 ~~~~~~~~~~-------------------------~V~~v~~spdg~~la~gs~dg-~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
+.+....... ....+++++++.......... .+..+|..+++.... . +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~--- 250 (349)
T 1jmx_B 177 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ-E--F--- 250 (349)
T ss_dssp CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE-E--E---
T ss_pred ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec-c--c---
Confidence 8764332221 345567776553221111111 122356655543221 1 1
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
......+..++|+|.++++++++ ++.|.+||..+....... .....+..++|+|+|++|++++.++.|++||+.
T Consensus 251 -~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 251 -ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAA---NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp -EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEE---ECSSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred -ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEE---cCCCCccceEECCCCCEEEEecCCCeEEEEecc
Confidence 11345788999999556677777 889999999875543332 233457789999999999999889999999998
Q ss_pred CCC
Q 004410 596 NQD 598 (755)
Q Consensus 596 ~~~ 598 (755)
+++
T Consensus 325 ~~~ 327 (349)
T 1jmx_B 325 TLE 327 (349)
T ss_dssp TTE
T ss_pred ccc
Confidence 775
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=7.1e-18 Score=174.74 Aligned_cols=200 Identities=16% Similarity=0.117 Sum_probs=148.9
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CeEEEEEe-c-CCcEEEEEEeeCCCCEEEEEeC--CCc--EEEE
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-DRCLRVFS-H-NNYVTSVAFNPVDDNYFISGSI--DGK--VRIW 456 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-~~~~~~~~-h-~~~V~~i~fsp~d~~~l~sgs~--Dg~--V~iw 456 (755)
..|...|.+++|+|++ +|++++ ++.|++||+.+ ++...... + ...|.+++|+| ++++|++++. ++. |.+|
T Consensus 38 ~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 38 WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEE
T ss_pred ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEE
Confidence 3467889999999999 677665 88999999999 87776664 3 47889999999 9999999983 344 5555
Q ss_pred EcCCCeEEEeccCCcceEEEEEccCCCeEE-EEeCCCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGI-VGTMTGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~spdg~~la-~gs~dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
++.++....+..+ ..+..++|+|+|+.|+ ++..++.+++|++. ++.... ...+...+.+++|+| ++
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~s~-dg 184 (297)
T 2ojh_A 116 PSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR---------LTHGEGRNDGPDYSP-DG 184 (297)
T ss_dssp ETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE---------CCCSSSCEEEEEECT-TS
T ss_pred ECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE---------cccCCCccccceECC-CC
Confidence 5566655444433 3489999999999887 67789999999854 443321 122456789999999 77
Q ss_pred CEEEEEE-CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----------CcEEEEEcCCCC
Q 004410 534 SKVIVTS-ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----------SNIYIWNYSNQD 598 (755)
Q Consensus 534 ~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----------g~I~iWd~~~~~ 598 (755)
.+|++++ .++.++||+.......... ...+...+..++|+|+|++|++++.+ +.|++||+.+++
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVER-ITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEEE-CCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred CEEEEEecCCCCccEEEECCCCCCcEE-EecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 7777666 5899999987632222221 24566788899999999999988876 569999998765
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=4.4e-18 Score=201.33 Aligned_cols=299 Identities=10% Similarity=0.077 Sum_probs=188.3
Q ss_pred CcceeecCCCCeeEEeeCC---------CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 238 HGSATLKPGDHELTLGQRM---------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~d---------g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
+.+++|||||++||+++.+ +.|.+|++..+.. ..+ ....+|...|..++|||||++||+++. +.|
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l---~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i 136 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--QSL---DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNI 136 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--EEC---CCTTCCSCCCSBCCBCSSTTCEEEEET-TEE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce--Eec---cCCccccccccccEECCCCCEEEEEEC-CeE
Confidence 5679999999999998764 7888999876542 111 122356666889999999999999886 799
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
++|++.+++.......+.... ...... + + +.. ..-.
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~-------------~~~g~~--------------~----------~------v~~-ee~~ 172 (723)
T 1xfd_A 137 YYCAHVGKQAIRVVSTGKEGV-------------IYNGLS--------------D----------W------LYE-EEIL 172 (723)
T ss_dssp EEESSSSSCCEEEECCCBTTT-------------EEEEEC--------------C----------H------HHH-HTTS
T ss_pred EEEECCCCceEEEecCCCCCc-------------eECccc--------------c----------e------eEE-EEec
Confidence 999998876433221111000 000000 0 0 000 0001
Q ss_pred CCEEEEEEcCCC-eEEEEeCCC----------------------------------cEEEEeCCCCeEEEEEe-c-----
Q 004410 389 SEVLDLSWSKNG-FLLSSSADK----------------------------------TVRLWQVGIDRCLRVFS-H----- 427 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg----------------------------------~V~iWdl~s~~~~~~~~-h----- 427 (755)
..+.+++|+||| .|++++.|+ .|++||+.++++...+. +
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 234667777777 666665432 79999999888655553 2
Q ss_pred -CCcEEEEEEeeCCCCEEEEEeC----CCcEEEEEcCCCeEEEec--cCCcce----EEEEEccCCCeEEEE--eCCC--
Q 004410 428 -NNYVTSVAFNPVDDNYFISGSI----DGKVRIWEVRRCQVVDYT--DIREIV----SAVCYCPDGKGGIVG--TMTG-- 492 (755)
Q Consensus 428 -~~~V~~i~fsp~d~~~l~sgs~----Dg~V~iwdl~~~~~~~~~--~~~~~V----~~v~~spdg~~la~g--s~dg-- 492 (755)
...+..++|+| |++++++... +..|++||+.++++.... .+...+ ..++|+|||+.|+.. ..++
T Consensus 253 ~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 253 REYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp SSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred ccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 56899999999 8988877653 357999999998876432 223333 378999999988764 4566
Q ss_pred ----cEEEEE-CCCCeE--eeeeeEEecccccCCCCCeEE-EEEcCCCCCEEEEEECC---CcEEEEECCccee-eEEEe
Q 004410 493 ----NCRFYD-IKDNQL--YQQNQICLQGKKKLPGKRITG-FQFSPSDPSKVIVTSAD---SLVRVLCGENVVG-KFKAS 560 (755)
Q Consensus 493 ----~I~iwD-~~~~~~--~~~~~~~~~~~~~~~~~~I~~-v~fsp~d~~~l~s~s~D---g~I~iwd~~~~~~-~~~~~ 560 (755)
.|.+|| ..++.. ... + ......+.. ++|+| +++.|+..+.+ +.++||++..... ....
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~----l----~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~- 401 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQS----I----TSGDWDVTKILAYDE-KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQC- 401 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCB----S----CCSSSCEEEEEEEET-TTTEEEEEESSSCTTCCEEEEECSSTTCCCBC-
T ss_pred cceeEEEEEeccCCCCccceeE----e----ecCCeEEEeeeEEcC-CCCEEEEEEcCCCCcceEEEEEeCCCCCCcce-
Confidence 577777 344430 111 1 111233444 69999 78887766655 7899998754221 1111
Q ss_pred eec---cCCceEEEEEecCCCEEEEEeCCC---cEEEEEcCCC
Q 004410 561 AFR---VAGSQMFATFTSDGKHVVSPSEDS---NIYIWNYSNQ 597 (755)
Q Consensus 561 ~~~---~~~~v~~l~fspdg~~L~sgs~Dg---~I~iWd~~~~ 597 (755)
... +...+..++|+|||++|+.....- ...+++..++
T Consensus 402 l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~ 444 (723)
T 1xfd_A 402 LSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK 444 (723)
T ss_dssp SSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred ecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCC
Confidence 111 456688999999999988754332 2344554433
No 152
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.79 E-value=2.7e-17 Score=174.73 Aligned_cols=236 Identities=13% Similarity=0.142 Sum_probs=170.6
Q ss_pred EEecCCC-EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEe
Q 004410 291 KFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL 369 (755)
Q Consensus 291 ~fspdg~-~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (755)
.|.++++ .+++++.++.|++||+.+++....+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~----------------------------------------------- 36 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI----------------------------------------------- 36 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-----------------------------------------------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-----------------------------------------------
Confidence 4555554 5778889999999999887653322
Q ss_pred CCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeC-CCcEEEEeCCCCeE-EEEEecCCcEEE-EEEeeCCCCEEE
Q 004410 370 PPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA-DKTVRLWQVGIDRC-LRVFSHNNYVTS-VAFNPVDDNYFI 445 (755)
Q Consensus 370 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWdl~s~~~-~~~~~h~~~V~~-i~fsp~d~~~l~ 445 (755)
..+...+ .++|+|++ ++++++. ++.|.+||+.+++. ...+.+...... ++|+| ++++++
T Consensus 37 ---------------~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~ 99 (331)
T 3u4y_A 37 ---------------TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAV 99 (331)
T ss_dssp ---------------ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEE
T ss_pred ---------------EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEE
Confidence 2234445 89999999 5666655 89999999999887 666654444445 99999 999888
Q ss_pred EEeCCC---cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEE-eCCCc-EEEEECCCCeEeeeeeEEecccccCCC
Q 004410 446 SGSIDG---KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGN-CRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 446 sgs~Dg---~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~g-s~dg~-I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
++..++ .|.+||+.+++.+........+..++|+|+|++|+++ ..++. |.+|++.....+..... ......
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~----~~~~~~ 175 (331)
T 3u4y_A 100 TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ----EFISGG 175 (331)
T ss_dssp ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE----EEECSS
T ss_pred EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC----ccccCC
Confidence 555553 8999999999988766666778999999999876665 45588 99999986443322111 111234
Q ss_pred CCeEEEEEcCCCCCEEEE-EECCCcEEEEECCccee---eEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 004410 521 KRITGFQFSPSDPSKVIV-TSADSLVRVLCGENVVG---KFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYS 595 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s-~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~ 595 (755)
.....++|+| +++++++ +..++.|.+||..+... ... ......+..++|+|||++|+.++ .++.|.+||+.
T Consensus 176 ~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 176 TRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNA---VGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp SSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEE---EECSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred CCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeee---ccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 5689999999 7775554 45689999999876544 222 23446778899999999877665 57889999998
Q ss_pred CCC
Q 004410 596 NQD 598 (755)
Q Consensus 596 ~~~ 598 (755)
+++
T Consensus 252 ~~~ 254 (331)
T 3u4y_A 252 SGT 254 (331)
T ss_dssp TTE
T ss_pred CCc
Confidence 875
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=2.1e-17 Score=179.70 Aligned_cols=282 Identities=13% Similarity=0.048 Sum_probs=184.3
Q ss_pred cceeecCCCCeeEEeeC-CCe--EEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 239 GSATLKPGDHELTLGQR-MRR--VRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 239 ~~~~~spdg~~lasgs~-dg~--V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
...+|+|||++|+.++. ++. |.+|+...... .+...+|...+..+.|+|||++|+.++.++.|++||+.+
T Consensus 39 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-------~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (388)
T 3pe7_A 39 YQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-------TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT 111 (388)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-------EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred cCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-------EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 34789999999998877 674 77777654332 122344555555678999999999999999999999988
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE-
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL- 394 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l- 394 (755)
++....+.. +...+...
T Consensus 112 g~~~~~~~~--------------------------------------------------------------~~~~~~~~~ 129 (388)
T 3pe7_A 112 LEENVVYQV--------------------------------------------------------------PAEWVGYGT 129 (388)
T ss_dssp CCEEEEEEC--------------------------------------------------------------CTTEEEEEE
T ss_pred Ccceeeeec--------------------------------------------------------------hhhcccccc
Confidence 764332221 11112111
Q ss_pred -EEcCCC-eEEE----------------------EeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 395 -SWSKNG-FLLS----------------------SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 395 -~~s~~~-~L~s----------------------~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
.+++++ .++. ...+..|++||+.+++......+...+..++|+|.+++.|+....+
T Consensus 130 ~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~ 209 (388)
T 3pe7_A 130 WVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEG 209 (388)
T ss_dssp EEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECS
T ss_pred eeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEec
Confidence 124444 2221 2244779999999998877777888899999999556777666653
Q ss_pred ------CcEEEEEcCCCeEEEeccCC--cceEEEEEccCCCeEEEEeC-CC----cEEEEECCCCeEeeeeeEEeccccc
Q 004410 451 ------GKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGKGGIVGTM-TG----NCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 451 ------g~V~iwdl~~~~~~~~~~~~--~~V~~v~~spdg~~la~gs~-dg----~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
..|.++|+..+....+..+. ..+..++|+|||+.|+..+. ++ .|++||+.+++...... +.+...
T Consensus 210 ~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~--~~~~~~ 287 (388)
T 3pe7_A 210 PHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS--MPACSH 287 (388)
T ss_dssp CTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE--ECCEEE
T ss_pred CCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc--CCCcee
Confidence 37888898877766655554 35788999999998866543 22 39999999887543211 111000
Q ss_pred CCCCCeEEEEEcCCCCCEEEEE---------ECCCcEEEEECCcceeeEEEeeeccCC-----------ceEEEEEecCC
Q 004410 518 LPGKRITGFQFSPSDPSKVIVT---------SADSLVRVLCGENVVGKFKASAFRVAG-----------SQMFATFTSDG 577 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~---------s~Dg~I~iwd~~~~~~~~~~~~~~~~~-----------~v~~l~fspdg 577 (755)
. ......+.|+| +++.|+.. ..+..|++||......... ..+.. .+..++|+|||
T Consensus 288 ~-~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~spDg 362 (388)
T 3pe7_A 288 L-MSNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV---ARHDTSWKVFEGDRQVTHPHPSFTPDD 362 (388)
T ss_dssp E-EECTTSSEEEE-EECCC------------CCCCEEEEEETTTTEEEEE---EECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred e-eecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCceEEe---ccccCcccccccccccCCCCccCCCCC
Confidence 0 00011236899 66666643 4567899999887543322 22333 47788999999
Q ss_pred CEEEEEe-CCCcEEEEEcCC
Q 004410 578 KHVVSPS-EDSNIYIWNYSN 596 (755)
Q Consensus 578 ~~L~sgs-~Dg~I~iWd~~~ 596 (755)
++|+.++ .+|...||.++-
T Consensus 363 ~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 363 KQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp SEEEEEECTTSSCEEEEEEC
T ss_pred CEEEEEecCCCceeEEEEEC
Confidence 9888766 467766766543
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=4.7e-18 Score=196.05 Aligned_cols=232 Identities=9% Similarity=0.040 Sum_probs=170.8
Q ss_pred ccccEEEEEEecCCCEEEEEcC-CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 283 HEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
+..+|++++|+|||++||+++. ||+++||++.+++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------------------------- 56 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------------------------- 56 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-------------------------------------------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-------------------------------------------
Confidence 3568999999999999999887 99999999855432
Q ss_pred CCceEEEeCCcceeccCccceEecCCC-CCEEEEEEcCCCeEEEEeC---CCcEEEEeCCC---CeEEEEEecCCcEEEE
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNGFLLSSSA---DKTVRLWQVGI---DRCLRVFSHNNYVTSV 434 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~s~~~~L~s~s~---Dg~V~iWdl~s---~~~~~~~~h~~~V~~i 434 (755)
..+..|. ..+..++|+|+..+++++. +...+||.+.. +... .+.....+...
T Consensus 57 --------------------~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~ 115 (582)
T 3o4h_A 57 --------------------VKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRIL 115 (582)
T ss_dssp --------------------EECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEE
T ss_pred --------------------EeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceee
Confidence 1222343 5788899999854455554 45556654432 2222 44333445577
Q ss_pred EEeeCCCC-EEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC----CcEEEEECCCCeEeeeee
Q 004410 435 AFNPVDDN-YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT----GNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 435 ~fsp~d~~-~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d----g~I~iwD~~~~~~~~~~~ 509 (755)
+|+| +++ .+++...++.+.+||+.+++...+..+.. .+++|+|||+.|+.++.+ +.|++||+.+++...
T Consensus 116 ~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~--- 189 (582)
T 3o4h_A 116 SGVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV--- 189 (582)
T ss_dssp EEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE---
T ss_pred eeCC-CCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE---
Confidence 8888 654 44444555566699999998776655544 789999999999988777 779999999887542
Q ss_pred EEecccccCCCCCeEEEEEcCCCCCEEEEEECCC--cEEEEECCcceeeEEEeeeccCCceEEEE--------EecCCCE
Q 004410 510 ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS--LVRVLCGENVVGKFKASAFRVAGSQMFAT--------FTSDGKH 579 (755)
Q Consensus 510 ~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~v~~l~--------fspdg~~ 579 (755)
+ ..+...+..++|+| |+++|+++..++ .|++||..+.... . ...+...+..++ |+|||.+
T Consensus 190 --l----~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~spdg~~ 259 (582)
T 3o4h_A 190 --F----DSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE-D--LELPSKDFSSYRPTAITWLGYLPDGRL 259 (582)
T ss_dssp --E----CCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE-E--CCCSCSHHHHHCCSEEEEEEECTTSCE
T ss_pred --e----ecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE-E--ccCCCcChhhhhhccccceeEcCCCcE
Confidence 1 22456789999999 899999888888 8999998875554 2 245655666666 9999999
Q ss_pred EEEEeCCCcEEEEEc
Q 004410 580 VVSPSEDSNIYIWNY 594 (755)
Q Consensus 580 L~sgs~Dg~I~iWd~ 594 (755)
+++++.|+.++||++
T Consensus 260 ~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 260 AVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEETTEEEEEET
T ss_pred EEEEEcCCcEEEEEE
Confidence 999999999999999
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=6.9e-18 Score=187.24 Aligned_cols=260 Identities=16% Similarity=0.116 Sum_probs=171.9
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
..+..|++++++.+|++++.|+ |+||+....... ....... .
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~----------------------------------~ 78 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDP----------------------------------N 78 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCT----------------------------------T
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cccccCc----------------------------------c
Confidence 3578899999999999999888 999886432100 0000000 0
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE----EEeCCCcEEEEeCCCC--------eE---EEEE-ec
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL----SSSADKTVRLWQVGID--------RC---LRVF-SH 427 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~----s~s~Dg~V~iWdl~s~--------~~---~~~~-~h 427 (755)
.... ..+... ..|...|.+++|++++ +|+ +++.|++|+|||+.++ +. +..+ .|
T Consensus 79 ~~~~---------~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h 148 (434)
T 2oit_A 79 KIVD---------KVQGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA 148 (434)
T ss_dssp CEEE---------CCCCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG
T ss_pred cccc---------cCcccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCC
Confidence 0000 001111 2467789999999999 777 7888999999998654 22 2333 38
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
...|++++|+|.++++|++++.||+|++||++++..+ ....|...|++++|+|+|++|++|+.||.|++||++ +....
T Consensus 149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~ 227 (434)
T 2oit_A 149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK 227 (434)
T ss_dssp GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE
T ss_pred CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc
Confidence 8999999999944899999999999999999988655 455678899999999999999999999999999998 43332
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEE-EECCCc------EEEEECCcce----eeEEEee-e-----ccCCceE
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIV-TSADSL------VRVLCGENVV----GKFKASA-F-----RVAGSQM 569 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s-~s~Dg~------I~iwd~~~~~----~~~~~~~-~-----~~~~~v~ 569 (755)
...... .....+...|.+++|++ +..++++ ...+|. +++|++.... ..+.... . ....+..
T Consensus 228 ~~~~~~-~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 305 (434)
T 2oit_A 228 VIPCPP-FYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHY 305 (434)
T ss_dssp EECCCT-TCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCE
T ss_pred cccCCc-ccCCCCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcce
Confidence 211100 00011234799999998 6555544 444543 8899987542 1111100 0 1222333
Q ss_pred EEEEecCCCEEEEEeC-CCcEEEEEcC
Q 004410 570 FATFTSDGKHVVSPSE-DSNIYIWNYS 595 (755)
Q Consensus 570 ~l~fspdg~~L~sgs~-Dg~I~iWd~~ 595 (755)
.+.+-++.+++++++. .+.|.|....
T Consensus 306 ~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 306 YLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred eeehhccCCEEEEecCCCCceeEEEec
Confidence 4444477777776654 3446666644
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.77 E-value=2.3e-16 Score=169.00 Aligned_cols=252 Identities=14% Similarity=0.135 Sum_probs=167.6
Q ss_pred ccCcceeecCCCCeeEEeeC---CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc-CCCcEEEE
Q 004410 236 DRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVW 311 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~---dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs-~Dg~I~vW 311 (755)
.....++|+|+|+ |++++. ++.|.+|++..+.. .....+..|...+..++|+|||++|++++ .++.|.+|
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-----~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-----HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-----EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-----EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 4556699999999 555443 68999999854331 12233455777889999999999888887 67899999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
++........+... .... ..+. ...+...+
T Consensus 114 ~~~~~g~~~~~~~~---------------------------------~~~~---------------~~p~--~~~~~~~~ 143 (347)
T 3hfq_A 114 KIAADGALTLTDTV---------------------------------QHSG---------------HGPR--PEQDGSHI 143 (347)
T ss_dssp EECTTSCEEEEEEE---------------------------------ECCC---------------CCSS--TTCSSCCE
T ss_pred EeCCCCCeeeccee---------------------------------ecCC---------------CCCC--ccccCCCc
Confidence 98532211111000 0000 0000 11234568
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCC-CCeEEEEE--e--cCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEEcCC--Ce
Q 004410 392 LDLSWSKNG-FLLSSSADKTVRLWQVG-IDRCLRVF--S--HNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRR--CQ 462 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~Dg~V~iWdl~-s~~~~~~~--~--h~~~V~~i~fsp~d~~~l~s-gs~Dg~V~iwdl~~--~~ 462 (755)
.+++|+|++ .+++...++.|++|++. +++..... . ....+..++|+| +++++++ +..++.|.+|++.. ++
T Consensus 144 ~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~ 222 (347)
T 3hfq_A 144 HYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGA 222 (347)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred eEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 899999999 66666678899999998 55443222 2 344688999999 8886555 56788999999874 54
Q ss_pred EE---EeccCC------cceEEEEEccCCCeEEE-EeCCCcEEEEECCCC-eEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 463 VV---DYTDIR------EIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKDN-QLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 463 ~~---~~~~~~------~~V~~v~~spdg~~la~-gs~dg~I~iwD~~~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
.. ...... ..+..++|+|||++|++ ...++.|.+||+... .+..... ...+...+..++|+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~------~~~~~~~~~~~~~sp- 295 (347)
T 3hfq_A 223 FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ------ISTEGDFPRDFDLDP- 295 (347)
T ss_dssp EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE------EECSSSCCCEEEECT-
T ss_pred eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE------EecCCCCcCeEEECC-
Confidence 32 122222 45889999999998855 556899999999732 2221111 122345678999999
Q ss_pred CCCEEEEEECC-CcEEEEECC
Q 004410 532 DPSKVIVTSAD-SLVRVLCGE 551 (755)
Q Consensus 532 d~~~l~s~s~D-g~I~iwd~~ 551 (755)
++++|++++.+ +.|.+|+..
T Consensus 296 dg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 296 TEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEEcCCCcEEEEEEe
Confidence 88888877764 899999543
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=5.3e-17 Score=175.83 Aligned_cols=281 Identities=9% Similarity=0.034 Sum_probs=180.7
Q ss_pred eEEeeCC--CeEEEEECCCCcccccccccceee-ecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc-CCeeeeeeecC
Q 004410 250 LTLGQRM--RRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQ 325 (755)
Q Consensus 250 lasgs~d--g~V~Vw~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~-~~~~~~~~~~~ 325 (755)
++.|+.. +.|.+|++......+..+ ... .++...+..++|+|||++|++++.+ .|.+|++. +++......
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~---~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-- 78 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLI---KRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-- 78 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEE---EEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE--
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEe---eEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE--
Confidence 4455442 568887754322222211 111 1233467889999999999999888 99999986 554321110
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-e-EE
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F-LL 403 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~-L~ 403 (755)
...+ +.+..++|+|+| + ++
T Consensus 79 ----------------------------------------------------------~~~~-g~~~~~~~spdg~~l~~ 99 (365)
T 1jof_A 79 ----------------------------------------------------------HPIG-GHPRANDADTNTRAIFL 99 (365)
T ss_dssp ----------------------------------------------------------EECC-SSGGGGCTTSCCEEEEE
T ss_pred ----------------------------------------------------------eecC-CCCccEEECCCCCEEEE
Confidence 0001 113347788888 3 33
Q ss_pred -EEe-------------CCCcEEEEeCC-CCeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcC-CC
Q 004410 404 -SSS-------------ADKTVRLWQVG-IDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVR-RC 461 (755)
Q Consensus 404 -s~s-------------~Dg~V~iWdl~-s~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~-~~ 461 (755)
++. .++++.+|++. .++....+. +...+.+++|+| ++++++++.. ++.|++||+. ++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g 178 (365)
T 1jof_A 100 LAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASG 178 (365)
T ss_dssp EECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTS
T ss_pred EEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCC
Confidence 332 68999999997 466544432 467899999999 8988877664 6799999998 67
Q ss_pred eEEE---ec--cCCcceEEEEEccCCCeEEEEeC-CCcEEEEECC--CCeEeeee-eEE-ecccccCCCC------CeEE
Q 004410 462 QVVD---YT--DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK--DNQLYQQN-QIC-LQGKKKLPGK------RITG 525 (755)
Q Consensus 462 ~~~~---~~--~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~--~~~~~~~~-~~~-~~~~~~~~~~------~I~~ 525 (755)
+... .. .+...+..++|+|||++|+++.. ++.|.+|++. ++++.... .+. +......+.. .+..
T Consensus 179 ~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 258 (365)
T 1jof_A 179 EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD 258 (365)
T ss_dssp CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccccc
Confidence 6532 21 13566899999999999988775 6889999765 45543211 111 1110011111 5889
Q ss_pred EE-EcCCCCCEEEEEECC-C-----cEEEEECC-cceeeEEE-eeeccCCceEEEEEec---CCCEEEEEeCC-CcEEEE
Q 004410 526 FQ-FSPSDPSKVIVTSAD-S-----LVRVLCGE-NVVGKFKA-SAFRVAGSQMFATFTS---DGKHVVSPSED-SNIYIW 592 (755)
Q Consensus 526 v~-fsp~d~~~l~s~s~D-g-----~I~iwd~~-~~~~~~~~-~~~~~~~~v~~l~fsp---dg~~L~sgs~D-g~I~iW 592 (755)
++ |+| ++++|+++..+ + .|.+|++. +....... ....+...+..++|+| ||++|++++.+ +.|.||
T Consensus 259 i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 259 VCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY 337 (365)
T ss_dssp EEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred EEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence 99 999 88887776543 2 89999985 33222111 1122344566789999 89999999875 899999
Q ss_pred EcCCC
Q 004410 593 NYSNQ 597 (755)
Q Consensus 593 d~~~~ 597 (755)
+++..
T Consensus 338 ~~~~~ 342 (365)
T 1jof_A 338 RWKDE 342 (365)
T ss_dssp EEETT
T ss_pred EEchh
Confidence 98764
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=4e-16 Score=168.17 Aligned_cols=278 Identities=10% Similarity=0.130 Sum_probs=179.9
Q ss_pred eccCcceeecCCCCeeEEeeCC----CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc-CCCcEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRM----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVR 309 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~d----g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs-~Dg~I~ 309 (755)
......++|+|||++|++++.+ +.|.+|++......+. ....+..+......+++ ++++|++++ .++.|.
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~---~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH---LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSIT 123 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE---EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE---EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEE
Confidence 4556669999999999988875 7999998765322221 12233345556777888 888777776 578999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+|++.....+..+.. . ... . .........+..
T Consensus 124 ~~~~~~~g~~~~~~~-------~-~~~----------------------~------------------g~~~~~~~~~~~ 155 (361)
T 3scy_A 124 VFPIGQDGALLPASD-------V-IEF----------------------K------------------GSGPDKERQTMP 155 (361)
T ss_dssp EEEBCTTSCBCSCSE-------E-EEC----------------------C------------------CCCSCTTTCSSC
T ss_pred EEEeCCCCcCcccce-------e-EEc----------------------c------------------CCCCCccccCCC
Confidence 999975433211100 0 000 0 000000112344
Q ss_pred CEEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCe-------E-------EEEEecCCcEEEEEEeeCCCCEEEEEe-CCCc
Q 004410 390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDR-------C-------LRVFSHNNYVTSVAFNPVDDNYFISGS-IDGK 452 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~-------~-------~~~~~h~~~V~~i~fsp~d~~~l~sgs-~Dg~ 452 (755)
.+.+++|+|++ +|++++ .++.|++|++.... . .....+...+..++|+| +++++++++ .++.
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~ 234 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGT 234 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCE
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCe
Confidence 57899999999 565555 58899999887543 1 12233566789999999 898877766 6899
Q ss_pred EEEEEcCCCeEEE---e---ccCCcceEEEEEccCCCeEEEEeCC--CcEEEEECC--CCeEeeeeeEEecccccCCCCC
Q 004410 453 VRIWEVRRCQVVD---Y---TDIREIVSAVCYCPDGKGGIVGTMT--GNCRFYDIK--DNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 453 V~iwdl~~~~~~~---~---~~~~~~V~~v~~spdg~~la~gs~d--g~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
|.+|++.++.+.. . ..+...+..++|+|||++|+++..+ +.|.+|++. ++++.....+ .. ...
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~------~~-g~~ 307 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ------LT-GIH 307 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE------EC-SSC
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe------cC-CCC
Confidence 9999998776532 1 1223456899999999999777665 889999996 4443322111 11 356
Q ss_pred eEEEEEcCCCCCEEEEEE-CCCcEEEEECCcceeeEEEee-eccCCceEEEEEe
Q 004410 523 ITGFQFSPSDPSKVIVTS-ADSLVRVLCGENVVGKFKASA-FRVAGSQMFATFT 574 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~-~~~~~~v~~l~fs 574 (755)
+..++|+| ++++|++++ .++.|.+|+............ ..+...+.++.|.
T Consensus 308 ~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 308 PRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 77899999 888888877 678999976543222222211 1234567888875
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.75 E-value=1.6e-16 Score=168.43 Aligned_cols=192 Identities=8% Similarity=0.008 Sum_probs=145.0
Q ss_pred EEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEecCC------cEEEEEEeeCCCCEEEEEe------------CC
Q 004410 391 VLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNN------YVTSVAFNPVDDNYFISGS------------ID 450 (755)
Q Consensus 391 V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~h~~------~V~~i~fsp~d~~~l~sgs------------~D 450 (755)
+..++|+|++ .+ +++..++.|.+||+.+++.+..+.... .+.+++|+| ++++|+++. .+
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccC
Confidence 5678999999 54 555668899999999999888776433 678899999 898888886 57
Q ss_pred CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
+.|.+||+.+++.+........+..++|+|+|++|+++ ++.|++||+.+++....... .. .... +.|+|
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~----~~--~~~~---~~~s~ 183 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPI----QS--WEAE---TYAQP 183 (337)
T ss_dssp CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECS----TT--TTTT---TBCCC
T ss_pred ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeec----cc--cCCC---ceeCC
Confidence 99999999998887655556678899999999999888 68999999999887643221 00 0112 26788
Q ss_pred CCCCEEEEEECC-C-----------------------cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 531 SDPSKVIVTSAD-S-----------------------LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 531 ~d~~~l~s~s~D-g-----------------------~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
++..+++.+.. + .|.+||..+.... ......+...+..++|+|||++|+++ +
T Consensus 184 -dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 184 -DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp -BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred -CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--C
Confidence 55544443332 2 4689998876544 33334566678899999999999988 7
Q ss_pred CcEEEEEcCCCC
Q 004410 587 SNIYIWNYSNQD 598 (755)
Q Consensus 587 g~I~iWd~~~~~ 598 (755)
+.|++||+.+++
T Consensus 260 ~~v~~~d~~~~~ 271 (337)
T 1pby_B 260 NVLESFDLEKNA 271 (337)
T ss_dssp SEEEEEETTTTE
T ss_pred CeEEEEECCCCc
Confidence 999999998775
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.74 E-value=3.4e-17 Score=193.68 Aligned_cols=275 Identities=11% Similarity=0.061 Sum_probs=187.1
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccc---cEEEEEEecCCCEEEEEcC---------CCc
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGE---------DGT 307 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~fspdg~~LaSgs~---------Dg~ 307 (755)
.++|+|+|++++++ .++.|++|+...+.. .+.+.+|.. .|.+++|||||++||+++. ++.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS-------YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCE-------EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcE-------EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence 58999999765554 699999999876542 122334443 3899999999999999876 789
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|++||+.+++.+... .+
T Consensus 92 i~~~d~~~g~~~~~~------------------------------------------------------------~l--- 108 (719)
T 1z68_A 92 YYIYDLSNGEFVRGN------------------------------------------------------------EL--- 108 (719)
T ss_dssp EEEEETTTTEECCSS------------------------------------------------------------CC---
T ss_pred EEEEECCCCccccce------------------------------------------------------------ec---
Confidence 999999887641100 00
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcE-----------------EEEEEeeCCCCEEEEE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYV-----------------TSVAFNPVDDNYFISG 447 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V-----------------~~i~fsp~d~~~l~sg 447 (755)
...+..++|+||| .|+++. ++.|++||+.+++...... +...| .+++|+| |+++|+++
T Consensus 109 ~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~ 186 (719)
T 1z68_A 109 PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYA 186 (719)
T ss_dssp CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEE
T ss_pred CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEE
Confidence 1346779999999 777765 7899999999887765432 22222 4899999 99999998
Q ss_pred eCCC----------------------------------cEEEEEcCCCeEE---E------eccCCcceEEEEEccCCCe
Q 004410 448 SIDG----------------------------------KVRIWEVRRCQVV---D------YTDIREIVSAVCYCPDGKG 484 (755)
Q Consensus 448 s~Dg----------------------------------~V~iwdl~~~~~~---~------~~~~~~~V~~v~~spdg~~ 484 (755)
+.|. .|++||+.+++.. . +..+...+..++|+||++.
T Consensus 187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~ 266 (719)
T 1z68_A 187 EFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV 266 (719)
T ss_dssp EEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE
T ss_pred EECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeE
Confidence 8653 7889999987642 2 2346778999999999877
Q ss_pred EEEEeCCC----cEEEEE----CCCCeEeeeeeEEecccccCCCCCeE-----EEEEcCCCCCEEEE--EECCCc--EEE
Q 004410 485 GIVGTMTG----NCRFYD----IKDNQLYQQNQICLQGKKKLPGKRIT-----GFQFSPSDPSKVIV--TSADSL--VRV 547 (755)
Q Consensus 485 la~gs~dg----~I~iwD----~~~~~~~~~~~~~~~~~~~~~~~~I~-----~v~fsp~d~~~l~s--~s~Dg~--I~i 547 (755)
+++....+ .|.+|| +.+++........ ...+...+. .+.|+| +++.++. ...++. |.+
T Consensus 267 ~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~ 341 (719)
T 1z68_A 267 CLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI----EESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHY 341 (719)
T ss_dssp EEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE----EECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEE
T ss_pred EEEEeccccCeEEEEEEcccCCCCCCceEEEEecc----cccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEE
Confidence 77644332 488899 7777654322100 012333444 789999 6664443 445564 555
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSN 596 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~ 596 (755)
|+....... . ...+...+..+.++ +++.|+..+.+ +.++||.+..
T Consensus 342 ~~~~~~~~~-~--lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 342 IKDTVENAI-Q--ITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp ESSCSTTCE-E--CSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EECCCCceE-e--cccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 665543311 1 13344567777777 88888777665 8899998864
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.73 E-value=6.1e-17 Score=191.55 Aligned_cols=287 Identities=11% Similarity=0.025 Sum_probs=187.7
Q ss_pred CcceeecCCCCeeEEeeC---------CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 238 HGSATLKPGDHELTLGQR---------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~---------dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
+.+++|||||++||+++. ++.|++|++.++... .. +.+ ...+..++|||||++||++. |+.|
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~-~~----~~l---~~~~~~~~~SPDG~~la~~~-~~~i 132 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV-RG----NEL---PRPIQYLCWSPVGSKLAYVY-QNNI 132 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CS----SCC---CSSBCCEEECSSTTCEEEEE-TTEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc-cc----eec---CcccccceECCCCCEEEEEE-CCeE
Confidence 567999999999998876 789999998765420 00 011 24588899999999999986 7899
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
++|++.+++........ .....+.||.
T Consensus 133 ~~~~~~~g~~~~l~~~~-----------------------------------------------------~~~~v~~g~~ 159 (719)
T 1z68_A 133 YLKQRPGDPPFQITFNG-----------------------------------------------------RENKIFNGIP 159 (719)
T ss_dssp EEESSTTSCCEECCCCC-----------------------------------------------------BTTTEEESSC
T ss_pred EEEeCCCCCcEEEecCC-----------------------------------------------------CcCCeEcccc
Confidence 99999877643211000 0000112332
Q ss_pred C---------CEEEEEEcCCC-eEEEEeCCC----------------------------------cEEEEeCCCCeEE--
Q 004410 389 S---------EVLDLSWSKNG-FLLSSSADK----------------------------------TVRLWQVGIDRCL-- 422 (755)
Q Consensus 389 ~---------~V~~l~~s~~~-~L~s~s~Dg----------------------------------~V~iWdl~s~~~~-- 422 (755)
. ...+++|+||| .|++++.|. .|++||+.+++..
T Consensus 160 ~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~ 239 (719)
T 1z68_A 160 DWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP 239 (719)
T ss_dssp CHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC
T ss_pred cceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce
Confidence 2 22578999999 888777552 7899999988752
Q ss_pred -EE-----E-ecCCcEEEEEEeeCCCCEEEEEeCCC----cEEEEE----cCCCeEEEec-----cCCcceE-----EEE
Q 004410 423 -RV-----F-SHNNYVTSVAFNPVDDNYFISGSIDG----KVRIWE----VRRCQVVDYT-----DIREIVS-----AVC 477 (755)
Q Consensus 423 -~~-----~-~h~~~V~~i~fsp~d~~~l~sgs~Dg----~V~iwd----l~~~~~~~~~-----~~~~~V~-----~v~ 477 (755)
.. + .|...+..++|+| |++++++....+ .|.+|| +.++++.... .+...+. .+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (719)
T 1z68_A 240 QEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPV 318 (719)
T ss_dssp EECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCE
T ss_pred eEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccE
Confidence 22 1 3777899999999 777777644332 488999 8777765433 4555565 789
Q ss_pred EccCCCeEEE--EeCCC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-----CCcEEEE
Q 004410 478 YCPDGKGGIV--GTMTG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-----DSLVRVL 548 (755)
Q Consensus 478 ~spdg~~la~--gs~dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-----Dg~I~iw 548 (755)
|+|||+.|+. ...+| .|.+||+.+++... + ..+...+..+.+. ++..|+..+. ++.+++|
T Consensus 319 ~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~-----l----t~~~~~v~~~~~~--d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 319 FSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQ-----I----TSGKWEAINIFRV--TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp ECTTSSCEEEEEECTTSCEEEEEESSCSTTCEE-----C----SCSSSCEEEEEEE--CSSEEEEEESCGGGCTTCBEEE
T ss_pred ECCCCCeEEEEEEccCCceEEEEEECCCCceEe-----c----ccCceEEEEEEEE--eCCEEEEEEecCCCCCceEEEE
Confidence 9999997665 44555 47777877665321 1 1123456777766 4455555554 4888998
Q ss_pred ECCccee--eEEEe---eeccCCceEEEEEecCCCEEEEE-eCC--CcEEEEEcCCCC
Q 004410 549 CGENVVG--KFKAS---AFRVAGSQMFATFTSDGKHVVSP-SED--SNIYIWNYSNQD 598 (755)
Q Consensus 549 d~~~~~~--~~~~~---~~~~~~~v~~l~fspdg~~L~sg-s~D--g~I~iWd~~~~~ 598 (755)
....... ..... ...+...+..+.|+|||++|+.. +.+ ..+++||+.+++
T Consensus 388 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 388 RISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred EEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 8653111 11110 01144567889999999887754 333 468999987775
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=1.8e-15 Score=163.49 Aligned_cols=281 Identities=11% Similarity=0.071 Sum_probs=186.0
Q ss_pred CCCCeeEEee------CCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CCCcE
Q 004410 245 PGDHELTLGQ------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTV 308 (755)
Q Consensus 245 pdg~~lasgs------~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~Dg~I 308 (755)
++++++++.. .|+.|.+||..+... ..++..+..+ .++|+|||++|+++. .++.|
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~-------~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKF-------LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCE-------EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeE-------EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 3555555442 377999999765432 2345555555 899999999999886 36789
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.+||+.+++.+..+...... ..+.
T Consensus 84 ~v~d~~t~~~~~~i~~~~~~--------------------------------------------------------~~~g 107 (361)
T 2oiz_A 84 EVWDADKLTFEKEISLPPKR--------------------------------------------------------VQGL 107 (361)
T ss_dssp EEEETTTCCEEEEEEECTTB--------------------------------------------------------CCBC
T ss_pred EEEECcCCcEEEEEEcCccc--------------------------------------------------------cccC
Confidence 99999887766554321100 0012
Q ss_pred CCEEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCeEEEE-EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-CeE
Q 004410 389 SEVLDLSWSKNG-FLLSSSA--DKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQV 463 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~--Dg~V~iWdl~s~~~~~~-~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~~~ 463 (755)
.....++++|+| +|+++.. +++|.+||+.+++.+.. +..... ..+.+.|.....+++.+.||++.+|++.. +++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 334568999999 7777653 68999999999999888 655433 33567784457888999999999999865 554
Q ss_pred EEe------ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC-C---CCCeEEEEEcCCCC
Q 004410 464 VDY------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL-P---GKRITGFQFSPSDP 533 (755)
Q Consensus 464 ~~~------~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~-~---~~~I~~v~fsp~d~ 533 (755)
... .........+.+++++..++..+.++.|.++|+............+...... . ......++|+| ++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg 265 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-AS 265 (361)
T ss_dssp EEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TT
T ss_pred eeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CC
Confidence 411 1111112234456788888888899999999997654322111111110000 0 01111368999 66
Q ss_pred CEEEEEEC-----------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 534 SKVIVTSA-----------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 534 ~~l~s~s~-----------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
..++++.. .+.|.+||..+....... ..+. +..++|+|||++|++++. +.|.+||..++
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i--~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI--PGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE--ECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE--ecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 66665532 347999999886554443 2233 899999999999999887 99999999988
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=9.9e-16 Score=166.53 Aligned_cols=298 Identities=11% Similarity=0.060 Sum_probs=186.3
Q ss_pred ccCcceeecCCCCeeEEeeCC---CeEEEEECCCCcccccccccceeeeccccc-EEEEEEecCCCEEEEEcCCCcEEEE
Q 004410 236 DRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSLDGQYLASGGEDGTVRVW 311 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~d---g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~-V~~l~fspdg~~LaSgs~Dg~I~vW 311 (755)
..+..++|+|||++|+..... ..|.+|+....... .+..+... +..+.|+|||++|+.++.++.|++|
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~--------~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~ 107 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV--------QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKV 107 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE--------ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE--------EeecCCCCccccceECCCCCEEEEEEcCCcEEEE
Confidence 346678999999998876543 46888887654311 12222222 2337899999999999999999999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
++.+++.......+.. +.+.. ..+++.... ....+ ..
T Consensus 108 d~~~~~~~~~~~~~~~------~~~~g--------------------------~~l~~~~~~------~~~~~-----~~ 144 (396)
T 3c5m_A 108 DLETLEEQVIYTVDEE------WKGYG--------------------------TWVANSDCT------KLVGI-----EI 144 (396)
T ss_dssp ETTTCCEEEEEECCTT------EEEEE--------------------------EEEECTTSS------EEEEE-----EE
T ss_pred ECCCCCcEEEEecccc------cCCCC--------------------------CEEEeccCC------ccccc-----cc
Confidence 9988764433321111 00000 000000000 00000 00
Q ss_pred EEEEEcCCC-eEEEE-----eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEEcC
Q 004410 392 LDLSWSKNG-FLLSS-----SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVR 459 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~-----s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D------g~V~iwdl~ 459 (755)
..+.|+|++ .++.. ..+..|++||+.+++......+...+..+.|+|.++..|+..+.+ ..|.+||+.
T Consensus 145 ~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (396)
T 3c5m_A 145 LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED 224 (396)
T ss_dssp EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence 124577887 44433 466789999999998877777888899999999446666655543 468999998
Q ss_pred CCeEEEeccC--CcceEEEEEccCCCeEEEEeCC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 460 RCQVVDYTDI--REIVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 460 ~~~~~~~~~~--~~~V~~v~~spdg~~la~gs~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+++...+..+ ...+..++|+|||+.|+.++.+ +.|++||+.+++...... . .... +.|+|.+
T Consensus 225 ~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~--~--------~~~~-~~~s~~d 293 (396)
T 3c5m_A 225 GSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV--M--------PPCS-HLMSNFD 293 (396)
T ss_dssp SCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE--C--------CSEE-EEEECSS
T ss_pred CCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee--C--------CCCC-CCccCCC
Confidence 7765554443 2358889999999988877654 449999999876543111 1 1123 7898845
Q ss_pred CCEEEEEE----------------CCCcEEEEECCcceeeEEEeeeccCC-----------ceEEEEEecCCCEEEEEeC
Q 004410 533 PSKVIVTS----------------ADSLVRVLCGENVVGKFKASAFRVAG-----------SQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 533 ~~~l~s~s----------------~Dg~I~iwd~~~~~~~~~~~~~~~~~-----------~v~~l~fspdg~~L~sgs~ 585 (755)
++++++++ .+..|++||......... ..+.. .+..++|+|||++|+.++.
T Consensus 294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL---CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp SSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEE---EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc---cCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 56777654 347899999876543222 22222 2566789999999887775
Q ss_pred -CCcEEE--EEcCCCC
Q 004410 586 -DSNIYI--WNYSNQD 598 (755)
Q Consensus 586 -Dg~I~i--Wd~~~~~ 598 (755)
++...| +++.++.
T Consensus 371 ~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 371 FEGVPAIYIADVPESY 386 (396)
T ss_dssp TTSSCEEEEEECCTTC
T ss_pred CCCCceEEEEEEcccc
Confidence 455444 4554443
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=1e-15 Score=181.72 Aligned_cols=277 Identities=10% Similarity=0.045 Sum_probs=181.4
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccc-----cEEEEEEecCCCEEEEEcCC-------
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-----SILTMKFSLDGQYLASGGED------- 305 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~-----~V~~l~fspdg~~LaSgs~D------- 305 (755)
...++|+|||++++++ ++.|++|+..++... +.+.+|.. ....+.|||||++|+.++.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~ 89 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-------VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS 89 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceE-------EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEc
Confidence 4468999999999886 899999998765431 22344432 33458899999999999876
Q ss_pred --CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 306 --GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 306 --g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
+.+.+||+.+++.. .
T Consensus 90 ~~~~~~~~d~~~~~~~---------------------------------------------------------------~ 106 (740)
T 4a5s_A 90 YTASYDIYDLNKRQLI---------------------------------------------------------------T 106 (740)
T ss_dssp EEEEEEEEETTTTEEC---------------------------------------------------------------C
T ss_pred cceEEEEEECCCCcEE---------------------------------------------------------------E
Confidence 55679999877532 1
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcE-----------------EEEEEeeCCCCE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYV-----------------TSVAFNPVDDNY 443 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V-----------------~~i~fsp~d~~~ 443 (755)
+..|...+...+||||| .|+.+ .++.|++||+.+++..+... +...+ ..+.|+| |++.
T Consensus 107 l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~ 184 (740)
T 4a5s_A 107 EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTF 184 (740)
T ss_dssp SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSE
T ss_pred cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCE
Confidence 33466789999999999 77776 57899999999887654332 22223 3489999 9999
Q ss_pred EEEEeCCC------------------------------------cEEEEEcCC---C---eEEEecc------CCcceEE
Q 004410 444 FISGSIDG------------------------------------KVRIWEVRR---C---QVVDYTD------IREIVSA 475 (755)
Q Consensus 444 l~sgs~Dg------------------------------------~V~iwdl~~---~---~~~~~~~------~~~~V~~ 475 (755)
|+.++.|. +|++||+.+ + +...+.. +...+..
T Consensus 185 la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (740)
T 4a5s_A 185 LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCD 264 (740)
T ss_dssp EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEE
T ss_pred EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEE
Confidence 98876332 488899988 7 5555443 6677999
Q ss_pred EEEccCCCeEEEEeCC----CcEEEEECCCCe----EeeeeeEEecccccCCCCC-----eEEEEEcCCCCCEEE-EEEC
Q 004410 476 VCYCPDGKGGIVGTMT----GNCRFYDIKDNQ----LYQQNQICLQGKKKLPGKR-----ITGFQFSPSDPSKVI-VTSA 541 (755)
Q Consensus 476 v~~spdg~~la~gs~d----g~I~iwD~~~~~----~~~~~~~~~~~~~~~~~~~-----I~~v~fsp~d~~~l~-s~s~ 541 (755)
++|+|||+.++..... ..|.+||+.+++ ......+.. ..+... .....|+| |++.|+ ..+.
T Consensus 265 ~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~----~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~ 339 (740)
T 4a5s_A 265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE----MSTTGWVGRFRPSEPHFTL-DGNSFYKIISN 339 (740)
T ss_dssp EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE----ECSSSCSSSSSCCCCEECT-TSSEEEEEEEC
T ss_pred EEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee----ccCCceEccCcCCCceEcC-CCCEEEEEEEc
Confidence 9999999977665433 369999999876 222111100 112222 23678999 777666 5553
Q ss_pred -CC--cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----C--cEEEEEcCCC
Q 004410 542 -DS--LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----S--NIYIWNYSNQ 597 (755)
Q Consensus 542 -Dg--~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g--~I~iWd~~~~ 597 (755)
+| .|.+|+......... ......+..+. .+|++.|+..+.. + .|+..++..+
T Consensus 340 ~~G~~~l~~~~~~~~~~~~l---T~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~ 401 (740)
T 4a5s_A 340 EEGYRHICYFQIDKKDCTFI---TKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDY 401 (740)
T ss_dssp TTSCEEEEEEETTCSSCEES---CCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred CCCceEEEEEECCCCceEec---ccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCC
Confidence 44 577777765433221 22334455443 2456666554433 3 4555555443
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=4.9e-14 Score=146.44 Aligned_cols=248 Identities=9% Similarity=0.106 Sum_probs=175.6
Q ss_pred cccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
+|-..+.+|+++++|+++++...++.|.+|+.. ++.+..+....
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~----------------------------------- 70 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG----------------------------------- 70 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-----------------------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC-----------------------------------
Confidence 455678999999999999998899999999975 43322221000
Q ss_pred CCceEEEeCCcceeccCccceEecCCCCCEEEEEE-cCCCeEEEEeC--CCcEEEEeCCCCeEEEEEe--cCCcEEEEEE
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW-SKNGFLLSSSA--DKTVRLWQVGIDRCLRVFS--HNNYVTSVAF 436 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~-s~~~~L~s~s~--Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~f 436 (755)
...+|...+..+++ .+++.|+.+.. ++.|++|| .+++.+..+. +...+.++++
T Consensus 71 ---------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~ 128 (286)
T 1q7f_A 71 ---------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV 128 (286)
T ss_dssp ---------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE
T ss_pred ---------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE
Confidence 00234556888999 46775555553 89999999 5677777764 4467899999
Q ss_pred eeCCCCEEEEEeCCCcEEEEEcCCCeEEEec--cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~--~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
+| +++++++...++.|.+||........+. .....+..++++|+|+.+++...++.|++||..... +.. +..
T Consensus 129 ~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~----~~~ 202 (286)
T 1q7f_A 129 DN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-LRQ----IGG 202 (286)
T ss_dssp CT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-EEE----ESC
T ss_pred eC-CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE-EEE----Ecc
Confidence 99 8888888888899999997654433332 334568999999999977777789999999986543 221 111
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCC-cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADS-LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
..+...+.+++++| ++.++++...++ .|.+|+..... ............+..++++|+|+++++ +.|+.|++|+
T Consensus 203 --~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 203 --EGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQL-ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp --TTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCE-EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred --CCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCE-EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 11235688999999 778888877776 99999965322 112211222334789999999987777 6799999999
Q ss_pred cCCCC
Q 004410 594 YSNQD 598 (755)
Q Consensus 594 ~~~~~ 598 (755)
+....
T Consensus 278 ~~~~~ 282 (286)
T 1q7f_A 278 YVQLA 282 (286)
T ss_dssp CSCCC
T ss_pred ccccc
Confidence 87644
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.69 E-value=2.2e-16 Score=187.51 Aligned_cols=249 Identities=12% Similarity=0.124 Sum_probs=169.4
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
....++|+|||++|+++ |+.|++||+.+++....+..+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~--------------------------------------- 56 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENST--------------------------------------- 56 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTT---------------------------------------
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechh---------------------------------------
Confidence 35578999999999987 8999999998887533222111
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCC---------CcEEEEeCCCCeEEEEEecCCcEEEEE
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD---------KTVRLWQVGIDRCLRVFSHNNYVTSVA 435 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~D---------g~V~iWdl~s~~~~~~~~h~~~V~~i~ 435 (755)
+..+.....+++||||| +|+.++.+ +.+.+||+.++++.....+...+..++
T Consensus 57 ------------------~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~ 118 (740)
T 4a5s_A 57 ------------------FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVT 118 (740)
T ss_dssp ------------------TTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEE
T ss_pred ------------------hhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeE
Confidence 01122233468899999 78887766 566799999999876556788999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc--CCcce-----------------EEEEEccCCCeEEEEeCCC----
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--IREIV-----------------SAVCYCPDGKGGIVGTMTG---- 492 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~--~~~~V-----------------~~v~~spdg~~la~gs~dg---- 492 (755)
|+| |++.|+.+. |+.|++||+.+++...+.. ....+ .++.|+|||+.||.++.|.
T Consensus 119 ~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~ 196 (740)
T 4a5s_A 119 WSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP 196 (740)
T ss_dssp ECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred ECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCc
Confidence 999 999998885 7899999999887665432 22222 3589999999999875332
Q ss_pred --------------------------------cEEEEECCC---CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 493 --------------------------------NCRFYDIKD---NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 493 --------------------------------~I~iwD~~~---~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
.|++||+.+ +.......+........+...+..++|+| |++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~ 275 (740)
T 4a5s_A 197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISL 275 (740)
T ss_dssp EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEE
T ss_pred eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEE
Confidence 477788777 52111111111000112556789999999 777666
Q ss_pred EEEC----CCcEEEEECCcce--------eeEEEeeeccCCceE-----EEEEecCCCEEE-EEeCC---CcEEEEEcCC
Q 004410 538 VTSA----DSLVRVLCGENVV--------GKFKASAFRVAGSQM-----FATFTSDGKHVV-SPSED---SNIYIWNYSN 596 (755)
Q Consensus 538 s~s~----Dg~I~iwd~~~~~--------~~~~~~~~~~~~~v~-----~l~fspdg~~L~-sgs~D---g~I~iWd~~~ 596 (755)
.... +..|.+||..+.. ..... ..+...+. .++|+|||+.|+ ..+.+ ..|++||+.+
T Consensus 276 ~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~--~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 276 QWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE--MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE--ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred EEeCCCCCEEEEEEEECCCCccccceeEEEEeee--ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 5533 3369999977654 11111 23444433 688999999887 66643 4589999887
Q ss_pred CC
Q 004410 597 QD 598 (755)
Q Consensus 597 ~~ 598 (755)
++
T Consensus 354 ~~ 355 (740)
T 4a5s_A 354 KD 355 (740)
T ss_dssp SS
T ss_pred Cc
Confidence 65
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.67 E-value=5.8e-15 Score=160.30 Aligned_cols=248 Identities=13% Similarity=0.102 Sum_probs=167.8
Q ss_pred eecccccEEE-----EEEecCCCEEEEEcC-CCc--EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcc
Q 004410 280 FLAHEGSILT-----MKFSLDGQYLASGGE-DGT--VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK 351 (755)
Q Consensus 280 l~~H~~~V~~-----l~fspdg~~LaSgs~-Dg~--I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 351 (755)
+..|...+.. .+|+|||++||.++. ++. |.+||+.+++....
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------------------ 75 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------------------ 75 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------------------
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------------------
Confidence 4455555555 789999999999887 664 77888877653221
Q ss_pred eeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCC
Q 004410 352 IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN 429 (755)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~ 429 (755)
..+|...+..+.|+|++ .|+.++.++.|++||+.+++....+. +..
T Consensus 76 --------------------------------t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~ 123 (388)
T 3pe7_A 76 --------------------------------TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE 123 (388)
T ss_dssp --------------------------------CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT
T ss_pred --------------------------------eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh
Confidence 12233334456799999 89999999999999999998877765 444
Q ss_pred cEEEEE--EeeCCCCEEEEE----------------------eCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc-CCCe
Q 004410 430 YVTSVA--FNPVDDNYFISG----------------------SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKG 484 (755)
Q Consensus 430 ~V~~i~--fsp~d~~~l~sg----------------------s~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp-dg~~ 484 (755)
.+.... ++| ++.+++.. ..+..|++||+.+++...+..+...+..++|+| ||+.
T Consensus 124 ~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~ 202 (388)
T 3pe7_A 124 WVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDST 202 (388)
T ss_dssp EEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEE
T ss_pred cccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCE
Confidence 454444 477 88887743 234679999999998887777778899999999 9999
Q ss_pred EEEEeCC------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCC----cEEEEECCcc
Q 004410 485 GIVGTMT------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADS----LVRVLCGENV 553 (755)
Q Consensus 485 la~gs~d------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg----~I~iwd~~~~ 553 (755)
|+..... ..|.++|+.++..... .. ......+..+.|+| +++.|+..+ .++ .|++||..+.
T Consensus 203 l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~--~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 203 VAFCHEGPHDLVDARMWLINEDGTNMRKV-----KT--HAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEEEECSCTTTSSCSEEEEETTSCCCEES-----CC--CCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred EEEEEecCCCCCcceEEEEeCCCCceEEe-----ee--CCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCCC
Confidence 9887763 3788888876654321 11 00112577889999 776554433 322 3999998876
Q ss_pred eeeEEEeeeccCCc---eEEEEEecCCCEEEEE---------eCCCcEEEEEcCCCC
Q 004410 554 VGKFKASAFRVAGS---QMFATFTSDGKHVVSP---------SEDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~~~~~~---v~~l~fspdg~~L~sg---------s~Dg~I~iWd~~~~~ 598 (755)
..........+... ...++|+|||++|+.. ..+..|++||+.+++
T Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 275 ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 54332221111000 1123799999988854 456789999998865
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=2.5e-15 Score=175.83 Aligned_cols=295 Identities=11% Similarity=-0.017 Sum_probs=188.5
Q ss_pred eeeeeccCcceeecCCCCeeEEe--eCCCeEEEEECCCCcccccccccceeeecccccEE---------EEEEe--cCCC
Q 004410 231 MARIIDRHGSATLKPGDHELTLG--QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSIL---------TMKFS--LDGQ 297 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasg--s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~---------~l~fs--pdg~ 297 (755)
+.+|...+..+++++++-+++.. ..+++..||....... .+.+..|...|. ...|+ |||+
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~ 91 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-------EESALPAPWNVRNRVFEYSGFPWAGVPRPAGG 91 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-------EEESSCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-------cceeCCCCccccccccccCCccceeeeecCCC
Confidence 44455667778999887666766 5588999998532211 223445555555 56666 9999
Q ss_pred E-EEEEcC-CCcEEEEEcc--C-CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCc
Q 004410 298 Y-LASGGE-DGTVRVWKVI--E-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (755)
Q Consensus 298 ~-LaSgs~-Dg~I~vWdv~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (755)
+ |+.++. +..|.+|++. . ++ ...+...
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~----------------------------------------------- 123 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPV----------------------------------------------- 123 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCC-CEECSCC-----------------------------------------------
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCC-CEeccCC-----------------------------------------------
Confidence 8 776654 4556666554 1 22 1110000
Q ss_pred ceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCC----------CcEEEEeCCC------CeEEEEE-ecCCcEEEE
Q 004410 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----------KTVRLWQVGI------DRCLRVF-SHNNYVTSV 434 (755)
Q Consensus 373 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~D----------g~V~iWdl~s------~~~~~~~-~h~~~V~~i 434 (755)
....|...+..++|+||| .|++++.+ ..|++||+.+ ++..... .+...+..+
T Consensus 124 ----------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (662)
T 3azo_A 124 ----------SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGP 193 (662)
T ss_dssp ----------CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCC
T ss_pred ----------ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCc
Confidence 000155678899999999 88888776 5899999988 6665555 566788899
Q ss_pred EEeeCCCCEEEEEeCCC--------cEEEEEcC-CC---eEEEecc-CCcceEEEEEccCCCeEEEEeCCC--cEEEEEC
Q 004410 435 AFNPVDDNYFISGSIDG--------KVRIWEVR-RC---QVVDYTD-IREIVSAVCYCPDGKGGIVGTMTG--NCRFYDI 499 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg--------~V~iwdl~-~~---~~~~~~~-~~~~V~~v~~spdg~~la~gs~dg--~I~iwD~ 499 (755)
+|+| |+++|+.++.++ .|++||+. ++ +...+.. +...+..++|+|||++++++..++ .|.+||+
T Consensus 194 ~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~ 272 (662)
T 3azo_A 194 RLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP 272 (662)
T ss_dssp EECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred eECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence 9999 999998877553 79999999 56 5554444 467899999999999777887788 6777777
Q ss_pred CCCeEeeeeeEEeccccc--CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE--CCcceeeEEEeeeccCCceEEE-EEe
Q 004410 500 KDNQLYQQNQICLQGKKK--LPGKRITGFQFSPSDPSKVIVTSADSLVRVLC--GENVVGKFKASAFRVAGSQMFA-TFT 574 (755)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~--~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~~~~~~v~~l-~fs 574 (755)
.+++....... ..... .-...+..++|+| ++.+++++.. +.++||. ..... ... ...+...+..+ +++
T Consensus 273 ~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~--~~~-l~~~~~~~~~~~s~~ 345 (662)
T 3azo_A 273 ATGAATQLCRR--EEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE--LVD-AAGPWTEWAATLTVS 345 (662)
T ss_dssp TTCCEEESSCC--SSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE--EEE-CCSSCCEEEEEEEEE
T ss_pred CCCceeecccc--cccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc--EEE-ecCCCCeEEEEEecC
Confidence 66654432110 00000 0001145688998 7889999988 9999994 43322 221 23455566665 444
Q ss_pred cCCCEEEEEeCCC--cEEEEEcCCCC
Q 004410 575 SDGKHVVSPSEDS--NIYIWNYSNQD 598 (755)
Q Consensus 575 pdg~~L~sgs~Dg--~I~iWd~~~~~ 598 (755)
.+.-++++++.+. .|++||+.+++
T Consensus 346 ~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 346 GTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp TTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3333344555554 46666766665
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.66 E-value=1.6e-14 Score=156.30 Aligned_cols=245 Identities=11% Similarity=0.069 Sum_probs=163.4
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECC-CCcccccccccceeeecccccEEEEEEecCCCE--EEEEc----------
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVK-KQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY--LASGG---------- 303 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~-~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~--LaSgs---------- 303 (755)
.+..++|+|+|++|++++.+ .|.+|++. .+.. ... .....+ +.+.+++|+|||++ |+++.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~--~~~---~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 113 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI--VHE---ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE--EEE---EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE--EEe---eEeecC-CCCccEEECCCCCEEEEEEecCCcceeccce
Confidence 35569999999999988887 99999975 3221 100 011111 23456899999994 55654
Q ss_pred ---CCCcEEEEEccC-CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCc
Q 004410 304 ---EDGTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (755)
Q Consensus 304 ---~Dg~I~vWdv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (755)
.+|.+.+|++.. ++....+.
T Consensus 114 ~~~~~g~v~v~~~~~~g~~~~~~~-------------------------------------------------------- 137 (365)
T 1jof_A 114 FYKFAGYGNVFSVSETGKLEKNVQ-------------------------------------------------------- 137 (365)
T ss_dssp ESSSCCEEEEEEECTTCCEEEEEE--------------------------------------------------------
T ss_pred eecCCceEEEEccCCCCcCcceEe--------------------------------------------------------
Confidence 688999999863 43211110
Q ss_pred cceEe-cCCCCCEEEEEEcCCC-eEEEEe-CCCcEEEEeCC-CCeEEE--EEe---cCCcEEEEEEeeCCCCEEEEEeC-
Q 004410 380 PLHEF-QGHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVG-IDRCLR--VFS---HNNYVTSVAFNPVDDNYFISGSI- 449 (755)
Q Consensus 380 ~~~~~-~gh~~~V~~l~~s~~~-~L~s~s-~Dg~V~iWdl~-s~~~~~--~~~---h~~~V~~i~fsp~d~~~l~sgs~- 449 (755)
.+ ..+...+.+++|+|+| +|+++. .++.|++||+. +++... .+. +...+..++|+| +++++++++.
T Consensus 138 ---~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~ 213 (365)
T 1jof_A 138 ---NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEA 213 (365)
T ss_dssp ---EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETT
T ss_pred ---eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECC
Confidence 00 1245678999999999 676665 46899999998 676532 232 366799999999 9988887765
Q ss_pred CCcEEEEEcC--CCeEE----Eecc-------CCc------ceEEEE-EccCCCeEEEEeCCC------cEEEEECC-CC
Q 004410 450 DGKVRIWEVR--RCQVV----DYTD-------IRE------IVSAVC-YCPDGKGGIVGTMTG------NCRFYDIK-DN 502 (755)
Q Consensus 450 Dg~V~iwdl~--~~~~~----~~~~-------~~~------~V~~v~-~spdg~~la~gs~dg------~I~iwD~~-~~ 502 (755)
++.|.+|++. +++.. .... +.. .+..++ |+|||++|+++..+. .|.+|++. ++
T Consensus 214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g 293 (365)
T 1jof_A 214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG 293 (365)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC
Confidence 7899999875 45432 1111 111 588999 999999988776433 89999996 56
Q ss_pred eEeeeeeEEecccccCCCCCeEEEEEcCC--CCCEEEEEECC-CcEEEEECCcc
Q 004410 503 QLYQQNQICLQGKKKLPGKRITGFQFSPS--DPSKVIVTSAD-SLVRVLCGENV 553 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~v~fsp~--d~~~l~s~s~D-g~I~iwd~~~~ 553 (755)
++...... . ..+...+..++|+|. ++++|++++.+ +.|.||+....
T Consensus 294 ~~~~~~~~-~----~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 294 SIEKQLFL-S----PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CEEEEEEE-E----ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CEEEeeee-e----ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 54321110 1 112234556889995 57888888764 89999987654
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=5.9e-14 Score=149.20 Aligned_cols=276 Identities=10% Similarity=0.019 Sum_probs=186.6
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
..+.+++|+|++..++....++.+++|... ....+..+...+.+++|+|+|++++++..++.|.+||..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE----------PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET 75 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE----------EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred cccceeeecCCccceeEEeecccCcccccc----------eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence 346678899998888777778888888321 1123455667789999999999888889999999999876
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
++.... ...+...+.+++
T Consensus 76 ~~~~~~--------------------------------------------------------------~~~~~~~~~~i~ 93 (333)
T 2dg1_A 76 KEIKRP--------------------------------------------------------------FVSHKANPAAIK 93 (333)
T ss_dssp CCEEEE--------------------------------------------------------------EECSSSSEEEEE
T ss_pred CcEEEE--------------------------------------------------------------eeCCCCCcceEE
Confidence 642110 112446789999
Q ss_pred EcCCC-eEEEEeCC----CcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeC------CCcEEEEEcCCC
Q 004410 396 WSKNG-FLLSSSAD----KTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEVRRC 461 (755)
Q Consensus 396 ~s~~~-~L~s~s~D----g~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~------Dg~V~iwdl~~~ 461 (755)
+++++ .+++...+ +.|.+||..++.....+. +...+.+++++| +++++++... .+.|..+|..++
T Consensus 94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFR 172 (333)
T ss_dssp ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCC
Confidence 99999 45554445 589999998887654442 456799999999 8888877654 356777777666
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEE-eCCCcEEEEECCC-CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKD-NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~-~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
+...+......+..++|+|+|+.|+++ +.++.|.+||+.+ +............... ....+..+++.+ ++.++++.
T Consensus 173 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~-~G~l~v~~ 250 (333)
T 2dg1_A 173 TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT-GHEGPDSCCIDS-DDNLYVAM 250 (333)
T ss_dssp CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC-SSSEEEEEEEBT-TCCEEEEE
T ss_pred EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC-CCCCCCceEECC-CCCEEEEE
Confidence 655444444567899999999876554 4578999999964 3322111100000001 114678899999 78877777
Q ss_pred ECCCcEEEEECCcceeeEEEeeec----cCCceEEEEEecCCCEEEEEeCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFR----VAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~----~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
..++.|.+||.... ......... +...+.+++|++|++.|+.++.++
T Consensus 251 ~~~~~v~~~d~~g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 251 YGQGRVLVFNKRGY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp ETTTEEEEECTTSC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred cCCCEEEEECCCCC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 78899999997432 211211110 111578999999988777665553
No 171
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.64 E-value=8.4e-15 Score=156.06 Aligned_cols=232 Identities=8% Similarity=-0.012 Sum_probs=157.6
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEE
Q 004410 289 TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVV 368 (755)
Q Consensus 289 ~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (755)
.+++++++.++++++.++.|++||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------------------------------------------- 39 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------------------------------------------- 39 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------------------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--------------------------------------------
Confidence 356788999999999999999999988865443321
Q ss_pred eCCcceeccCccceEecCCCCCEEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEecC-------CcEEEEEEeeC
Q 004410 369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHN-------NYVTSVAFNPV 439 (755)
Q Consensus 369 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~h~-------~~V~~i~fsp~ 439 (755)
++...+..++|+|++ .+ ++...++.|.+||+.+++.+..+... ..+.+++|+|
T Consensus 40 -----------------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp- 101 (349)
T 1jmx_B 40 -----------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP- 101 (349)
T ss_dssp -----------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-
T ss_pred -----------------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-
Confidence 111135678999998 44 45557899999999999988777532 2378999999
Q ss_pred CCCEEEEEeCC------------CcEEEEEcCCCeE---EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 440 DDNYFISGSID------------GKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 440 d~~~l~sgs~D------------g~V~iwdl~~~~~---~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
++++|++++.+ +.|.+||+.+++. +....+...+.+++|+|+|+ +++++ +.|++||+.+++.
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY 178 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE
T ss_pred CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce
Confidence 99999988865 8999999988432 23333445688999999999 66654 4499999998887
Q ss_pred eeeeeEEecccc-------------cCCCC---CeEEEEEcCCCC----------CEEEEEECCCcEEEEECCcceeeEE
Q 004410 505 YQQNQICLQGKK-------------KLPGK---RITGFQFSPSDP----------SKVIVTSADSLVRVLCGENVVGKFK 558 (755)
Q Consensus 505 ~~~~~~~~~~~~-------------~~~~~---~I~~v~fsp~d~----------~~l~s~s~Dg~I~iwd~~~~~~~~~ 558 (755)
............ ..... ....+++++++. .++.....++.+++|+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 250 (349)
T 1jmx_B 179 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF-------- 250 (349)
T ss_dssp EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE--------
T ss_pred eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc--------
Confidence 653221100000 00000 234466665211 11122333445555443
Q ss_pred EeeeccCCceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 559 ASAFRVAGSQMFATFTS-DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 559 ~~~~~~~~~v~~l~fsp-dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..+...+..++|+| +|++|+++ ++.|++||+.+++
T Consensus 251 ---~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 251 ---ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp ---EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred ---ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 22455788999999 99999988 8899999998875
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=8.9e-14 Score=148.52 Aligned_cols=253 Identities=10% Similarity=0.034 Sum_probs=168.8
Q ss_pred ceeecCCCCeeEEee---------CCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC---C-
Q 004410 240 SATLKPGDHELTLGQ---------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---G- 306 (755)
Q Consensus 240 ~~~~spdg~~lasgs---------~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D---g- 306 (755)
..++ ||+.++... .++.|.+|+...+.. +.+ ..+..++|||||++||.++.+ +
T Consensus 19 ~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------~~l----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 19 DPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR--------RFI----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp EEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE--------EEE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred cceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce--------EEc----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 3556 888777642 256788998765431 112 468889999999999988754 2
Q ss_pred -cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 307 -TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 307 -~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
.|.+|++.+++.... .
T Consensus 85 ~~l~~~~~~~g~~~~l---------------------------------------------------------------~ 101 (347)
T 2gop_A 85 SEIWVADLETLSSKKI---------------------------------------------------------------L 101 (347)
T ss_dssp EEEEEEETTTTEEEEE---------------------------------------------------------------E
T ss_pred ceEEEEECCCCceEEE---------------------------------------------------------------E
Confidence 377777766543211 1
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeC---------------------------CCcEEEEeCCCCeEEEEEecCCcEEEEEEe
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSA---------------------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~---------------------------Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fs 437 (755)
.+.. +..++|+|++ .|+.++. ...|++||+.+++.+..+... .+..++|+
T Consensus 102 ~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~s 179 (347)
T 2gop_A 102 EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWH 179 (347)
T ss_dssp EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEE
T ss_pred cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCC
Confidence 1112 7788888888 6666653 257999999998874444333 88899999
Q ss_pred eCCCCEEEEEeCCC-------cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC--------CcEEEEECCCC
Q 004410 438 PVDDNYFISGSIDG-------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT--------GNCRFYDIKDN 502 (755)
Q Consensus 438 p~d~~~l~sgs~Dg-------~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d--------g~I~iwD~~~~ 502 (755)
| ++ +++++..++ ...||.+.+++...+..+ ..+..+ +|||+.|+.++.+ ..|.+|| ++
T Consensus 180 p-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~ 252 (347)
T 2gop_A 180 R-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK 252 (347)
T ss_dssp T-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS
T ss_pred C-Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC
Confidence 9 88 777776542 334444446665555444 455544 9999999887754 3688888 44
Q ss_pred eEeeeeeEEecccccCCCCCeEE-EEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEE
Q 004410 503 QLYQQNQICLQGKKKLPGKRITG-FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~-v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
+... + ...+...+.. +.|+ ++ ++++++.++.++|| ..+... ... ..+...|.+++|+| .+++
T Consensus 253 ~~~~-----l---~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~~-~~~--~~~~~~v~~~~~s~--~~~~ 315 (347)
T 2gop_A 253 EVMG-----I---LDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGEI-KPI--AKGRHWIMGFDVDE--IVVY 315 (347)
T ss_dssp CEEE-----S---STTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EESSSE-EEE--ECSSSEEEEEEESS--SEEE
T ss_pred ceEe-----c---cccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-EcCCce-EEE--ecCCCeEEeeeeeC--cEEE
Confidence 4321 1 1223456775 8898 45 88899999999999 763222 222 34567899999999 7888
Q ss_pred EEeCCCcE-EEEEcC
Q 004410 582 SPSEDSNI-YIWNYS 595 (755)
Q Consensus 582 sgs~Dg~I-~iWd~~ 595 (755)
+++.++.. .||.++
T Consensus 316 ~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 316 LKETATRLRELFTWD 330 (347)
T ss_dssp EEECSSSCCEEEEES
T ss_pred EEcCCCChHHheEeC
Confidence 88877765 778776
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.62 E-value=2.8e-13 Score=140.74 Aligned_cols=243 Identities=11% Similarity=0.098 Sum_probs=169.2
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEe-cCCCEEEEEcC-CCcEEEEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS-LDGQYLASGGE-DGTVRVWK 312 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fs-pdg~~LaSgs~-Dg~I~vWd 312 (755)
......++++|++.++++...++.|.+|+..... +..+.....-.+|...+..++++ ++++++++... ++.|.+|+
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 3445568999999988888889999999976321 11111100112455678999994 77777777643 88999998
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
.+++.+..+. ..+...+.
T Consensus 107 -~~g~~~~~~~-------------------------------------------------------------~~~~~~~~ 124 (286)
T 1q7f_A 107 -QYGQFVRKFG-------------------------------------------------------------ATILQHPR 124 (286)
T ss_dssp -TTSCEEEEEC-------------------------------------------------------------TTTCSCEE
T ss_pred -CCCcEEEEec-------------------------------------------------------------CccCCCce
Confidence 4444322110 12334678
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~ 468 (755)
++++.+++ .+++...++.|.+||.. ++.+..+. +...+..|+++| +++++++...++.|++||.....+..+..
T Consensus 125 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~ 202 (286)
T 1q7f_A 125 GVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGG 202 (286)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEEEESC
T ss_pred EEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCCCEEEEEcc
Confidence 89999999 55666678899999964 55666663 445789999999 88888888889999999986554444433
Q ss_pred C--CcceEEEEEccCCCeEEEEeCCC-cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 469 I--REIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 469 ~--~~~V~~v~~spdg~~la~gs~dg-~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
. ...+..++++++|+++++...++ .|.+||.. ++.+..+.. ......+.+++++| ++.++++ +.++.|
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~------~~~~~~~~~i~~~~-~g~l~vs-~~~~~v 273 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALES------KVKHAQCFDVALMD-DGSVVLA-SKDYRL 273 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEE------SSCCSCEEEEEEET-TTEEEEE-ETTTEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcc------cCCCCcceeEEECC-CCcEEEE-CCCCeE
Confidence 2 35789999999998888877776 99999965 444332221 11233578999999 7766555 679999
Q ss_pred EEEECCc
Q 004410 546 RVLCGEN 552 (755)
Q Consensus 546 ~iwd~~~ 552 (755)
++|+...
T Consensus 274 ~v~~~~~ 280 (286)
T 1q7f_A 274 YIYRYVQ 280 (286)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9998654
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.61 E-value=6.7e-13 Score=141.28 Aligned_cols=203 Identities=11% Similarity=0.110 Sum_probs=145.0
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe-EEEEEe----------cCCcEEEEEEeeCCCCEEEEEe-CCCc
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLRVFS----------HNNYVTSVAFNPVDDNYFISGS-IDGK 452 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~-~~~~~~----------h~~~V~~i~fsp~d~~~l~sgs-~Dg~ 452 (755)
++......+++++++ .+++...++.|++||..... .+..+. +-.....|+++|.+++++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 345678899999999 66777778999999986552 455552 2346899999985677888876 6999
Q ss_pred EEEEEcCCCeEEE-ecc----------CCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 453 VRIWEVRRCQVVD-YTD----------IREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 453 V~iwdl~~~~~~~-~~~----------~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
|++||. ++..+. +.. .-.....|+++|+ +.++++...++.|++||..+++.+.... .....
T Consensus 168 I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~------~~~~~ 240 (329)
T 3fvz_A 168 IVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK------HASFG 240 (329)
T ss_dssp EEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC------CTTTT
T ss_pred EEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe------ccccC
Confidence 999994 454443 321 1234899999998 6667777788899999999777665322 12345
Q ss_pred CCeEEEEEcCCCCCEEEEEE-------CCCcEEEEECCcceeeEEEe-eeccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 004410 521 KRITGFQFSPSDPSKVIVTS-------ADSLVRVLCGENVVGKFKAS-AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s-------~Dg~I~iwd~~~~~~~~~~~-~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
..+..++|+| +..+.+.+ .+..|++|+..+........ ...+...+..++++|+|.++++...++.|++|
T Consensus 241 ~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 241 RNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp TCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred CCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 6788999998 23333322 34589999977654333321 12455678999999999888888899999999
Q ss_pred EcCCC
Q 004410 593 NYSNQ 597 (755)
Q Consensus 593 d~~~~ 597 (755)
++...
T Consensus 319 ~~~~~ 323 (329)
T 3fvz_A 319 TLTEK 323 (329)
T ss_dssp EEEEC
T ss_pred eCCcc
Confidence 98653
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.57 E-value=6.2e-13 Score=141.56 Aligned_cols=248 Identities=12% Similarity=0.074 Sum_probs=175.3
Q ss_pred ccCcceeecCCCCeeEEeeCC------------------------CeEEEEECCCCcccccccccceee-ecccccEEEE
Q 004410 236 DRHGSATLKPGDHELTLGQRM------------------------RRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTM 290 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~d------------------------g~V~Vw~~~~~~~~~~~~~~~~~l-~~H~~~V~~l 290 (755)
..+..++++|+|+++++...+ ++|.+||...+... +.+ .++-.....|
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~p~gi 96 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------QSSGKNLFYLPHGL 96 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE-------EEECTTTCSSEEEE
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE-------eccCCCccCCceEE
Confidence 456679999999999888777 47899987644321 111 2345578999
Q ss_pred EEecCCCEEEEEcCCCcEEEEEccCCe-eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEe
Q 004410 291 KFSLDGQYLASGGEDGTVRVWKVIEHE-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL 369 (755)
Q Consensus 291 ~fspdg~~LaSgs~Dg~I~vWdv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (755)
+++|+|+++++...++.|++|+..... .+..+.....
T Consensus 97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~------------------------------------------ 134 (329)
T 3fvz_A 97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ------------------------------------------ 134 (329)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB------------------------------------------
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC------------------------------------------
Confidence 999999999999999999999974331 1111110000
Q ss_pred CCcceeccCccceEecCCCCCEEEEEEcC-CC-eEEEEe-CCCcEEEEeCCCCeEEEEEec-C----------CcEEEEE
Q 004410 370 PPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSS-ADKTVRLWQVGIDRCLRVFSH-N----------NYVTSVA 435 (755)
Q Consensus 370 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~L~s~s-~Dg~V~iWdl~s~~~~~~~~h-~----------~~V~~i~ 435 (755)
...-.++......++++| ++ .+++.+ .++.|++|| ..++.+..+.. . .....|+
T Consensus 135 -----------~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia 202 (329)
T 3fvz_A 135 -----------PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLA 202 (329)
T ss_dssp -----------CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEE
T ss_pred -----------CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEE
Confidence 000023555788999999 67 555554 589999999 56777777741 1 3489999
Q ss_pred EeeCC-CCEEEEEeCCCcEEEEEcCCCeEEEec---cCCcceEEEEEcc------CCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 436 FNPVD-DNYFISGSIDGKVRIWEVRRCQVVDYT---DIREIVSAVCYCP------DGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 436 fsp~d-~~~l~sgs~Dg~V~iwdl~~~~~~~~~---~~~~~V~~v~~sp------dg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
++| + ++++++...++.|++||..+++.+... .+...+.+++|+| +|+..++...+..|++||+.+++++
T Consensus 203 ~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~ 281 (329)
T 3fvz_A 203 LVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII 281 (329)
T ss_dssp EET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE
T ss_pred EEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE
Confidence 999 6 788888888999999999977776433 3456788999999 3333333344558999999998876
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
..+. ....+.....+++++| ++.++++...++.|++|+..
T Consensus 282 ~~~~-----~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 282 DVFK-----PVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEC-----CSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEE
T ss_pred EEEc-----CCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCC
Confidence 5421 1123456789999999 77888888889999999864
No 176
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=4.6e-14 Score=166.23 Aligned_cols=284 Identities=11% Similarity=-0.012 Sum_probs=182.6
Q ss_pred eecCCCCeeEEeeCCC---eEEEEEC--CCCc-ccccccccceeeecccccEEEEEEecCCCEEE-----EEcCCCcEEE
Q 004410 242 TLKPGDHELTLGQRMR---RVRVHPV--KKQS-RELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-----SGGEDGTVRV 310 (755)
Q Consensus 242 ~~spdg~~lasgs~dg---~V~Vw~~--~~~~-~~~~~~~~~~~l~~H~~~V~~l~fspdg~~La-----Sgs~Dg~I~v 310 (755)
..+|+|++++....++ .-.||.. .... ..+.. ....-.+|...+..++|||||++|| .|+.+..|++
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d--~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v 151 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLD--PNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV 151 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEEC--GGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEc--hHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence 3458899888765543 3444543 2221 11110 0011135667899999999999999 4445678999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.+++.+... .+... .
T Consensus 152 ~dl~tg~~~~~~------------------------------------------------------------~~~~~--~ 169 (695)
T 2bkl_A 152 IDVDSGEWSKVD------------------------------------------------------------VIEGG--K 169 (695)
T ss_dssp EETTTCCBCSSC------------------------------------------------------------CBSCC--T
T ss_pred EECCCCCCcCCc------------------------------------------------------------ccCcc--c
Confidence 999887632000 00011 1
Q ss_pred EEEEEEcCCC-eEEEEeCCCc-------------EEEEeCCCCeE--EEEEe---cCCcEEEEEEeeCCCCEEEEEeCCC
Q 004410 391 VLDLSWSKNG-FLLSSSADKT-------------VRLWQVGIDRC--LRVFS---HNNYVTSVAFNPVDDNYFISGSIDG 451 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~-------------V~iWdl~s~~~--~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg 451 (755)
...++|+||| .|+.++.|.. |++|++.+++. ...+. +...+..+.|+| ++++|+.++.++
T Consensus 170 ~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~ 248 (695)
T 2bkl_A 170 YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRG 248 (695)
T ss_dssp TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEET
T ss_pred ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCC
Confidence 1468999999 8888888776 99999998762 23332 456899999999 899888877666
Q ss_pred ----cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC----CCcEEEEECCCCeEeeeeeEEecccccCCCCCe
Q 004410 452 ----KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523 (755)
Q Consensus 452 ----~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~----dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I 523 (755)
.|++|+..+++...+..+...+....+ ++|. |++.+. ++.|.+||+.++.......+ +.. .....+
T Consensus 249 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~---~~~~~l 322 (695)
T 2bkl_A 249 WSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEI-VPE---DSSASL 322 (695)
T ss_dssp TTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEE-ECC---CSSCEE
T ss_pred CCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEE-ecC---CCCCeE
Confidence 788888777666666666666666666 6777 655554 57899999987642000000 110 113457
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe----CCCcEEEEEcCCCC
Q 004410 524 TGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS----EDSNIYIWNYSNQD 598 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs----~Dg~I~iWd~~~~~ 598 (755)
..++|+ ++.++++...|+..+||.................+.+..++++|+++.|+... ..+.|++||+.+++
T Consensus 323 ~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 323 LSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 788887 56788888999988888654211112211122356677888999998776332 35789999998876
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.57 E-value=3.3e-14 Score=154.41 Aligned_cols=191 Identities=9% Similarity=0.051 Sum_probs=133.0
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEE-------------------EEEeeCCCCEEEEE-----
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS-------------------VAFNPVDDNYFISG----- 447 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~-------------------i~fsp~d~~~l~sg----- 447 (755)
+.|+|++ .|+.++.++.|++||+.+++....+. +...... +.|+| +++.++.+
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~ 164 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHT 164 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHT
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccC
Confidence 6799999 88899999999999999988776665 3332222 24556 55555443
Q ss_pred eCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc-CCCeEEEEeCC------CcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 448 SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMT------GNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 448 s~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp-dg~~la~gs~d------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
..+..|++||+.+++...+..+...+..+.|+| +++.|+..+.+ ..|.+||+.++..... .. ....
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~--~~~~ 237 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI-----KE--HAEG 237 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES-----SC--CCTT
T ss_pred CCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe-----ec--cCCC
Confidence 356689999999988776666777899999999 88877776653 3588899876653221 11 0012
Q ss_pred CCeEEEEEcCCCCCEEEEEECC-----CcEEEEECCcceeeEEEeeeccCCceEEEEEec-CCCEEEEEe----------
Q 004410 521 KRITGFQFSPSDPSKVIVTSAD-----SLVRVLCGENVVGKFKASAFRVAGSQMFATFTS-DGKHVVSPS---------- 584 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-dg~~L~sgs---------- 584 (755)
..+..+.|+| +++.|+..+.+ +.|++||..+........ .. ... +.|+| ||++|++++
T Consensus 238 ~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 238 ESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp EEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CC-SEE-EEEECSSSSEEEEEECCC-------
T ss_pred ccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CC-CCC-CCccCCCCceEEEecCCcceeeccc
Confidence 3578899999 77766665443 349999987654333221 11 123 89999 999988765
Q ss_pred ------CCCcEEEEEcCCCC
Q 004410 585 ------EDSNIYIWNYSNQD 598 (755)
Q Consensus 585 ------~Dg~I~iWd~~~~~ 598 (755)
.++.|++||+.+++
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp ---CCCCCCEEEEEETTTTB
T ss_pred cccccCCCCcEEEEecccCc
Confidence 34789999998765
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.57 E-value=6.2e-14 Score=163.94 Aligned_cols=258 Identities=10% Similarity=0.030 Sum_probs=169.6
Q ss_pred eeeecccccEEEEEEecCCCEEEEE--cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASG--GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSg--s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
+.+.+|...|..++|++++-++++. +.++...||....+.....+..+....
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-------------------------- 70 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNV-------------------------- 70 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCB--------------------------
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccc--------------------------
Confidence 3466799999999999987777777 668899999864333222211110000
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc--CCC-e-EEEEeC-CCcEEEEeCC--C-CeEEEEEe-
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS--KNG-F-LLSSSA-DKTVRLWQVG--I-DRCLRVFS- 426 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s--~~~-~-L~s~s~-Dg~V~iWdl~--s-~~~~~~~~- 426 (755)
......+.+. ...|+ ||| . |+.++. +..|.+|++. . ++......
T Consensus 71 -------------------------~~~~~~~~~~--~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~ 123 (662)
T 3azo_A 71 -------------------------RNRVFEYSGF--PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPV 123 (662)
T ss_dssp -------------------------CCCGGGTCCC--CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCC
T ss_pred -------------------------cccccccCCc--cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCC
Confidence 0000111111 34454 888 6 665554 5667777776 3 44433333
Q ss_pred ----cCCcEEEEEEeeCCCCEEEEEeCC----------CcEEEEEcCC------CeEEEec-cCCcceEEEEEccCCCeE
Q 004410 427 ----HNNYVTSVAFNPVDDNYFISGSID----------GKVRIWEVRR------CQVVDYT-DIREIVSAVCYCPDGKGG 485 (755)
Q Consensus 427 ----h~~~V~~i~fsp~d~~~l~sgs~D----------g~V~iwdl~~------~~~~~~~-~~~~~V~~v~~spdg~~l 485 (755)
|...+..++|+| |++.|++++.+ ..|++||+.+ ++...+. .+...+..++|+|||++|
T Consensus 124 ~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~l 202 (662)
T 3azo_A 124 SAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQA 202 (662)
T ss_dssp CCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEE
T ss_pred ccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEE
Confidence 566789999999 99999988877 5899999998 7776666 666788899999999999
Q ss_pred EEEeCCC--------cEEEEECC-CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC--cEEEEECCcce
Q 004410 486 IVGTMTG--------NCRFYDIK-DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS--LVRVLCGENVV 554 (755)
Q Consensus 486 a~gs~dg--------~I~iwD~~-~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg--~I~iwd~~~~~ 554 (755)
+.++.++ .|++||+. ++.......+ ...+...+..+.|+| |+++++++..++ .|.+||..+..
T Consensus 203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l-----~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 203 VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL-----LGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE-----EEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCC
T ss_pred EEEECCCCCCCCCCcEEEEEEECCCCcccccEEe-----CCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCc
Confidence 9877553 79999998 5622111111 111245788999999 777888888888 45555543332
Q ss_pred eeEEEeeeccCCc--------eEEEEEecCCCEEEEEeCCCcEEEE--EcCCCC
Q 004410 555 GKFKASAFRVAGS--------QMFATFTSDGKHVVSPSEDSNIYIW--NYSNQD 598 (755)
Q Consensus 555 ~~~~~~~~~~~~~--------v~~l~fspdg~~L~sgs~Dg~I~iW--d~~~~~ 598 (755)
.. .....+... +..++|+++++++++++. +.++|| |+.+++
T Consensus 277 ~~--~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 277 AT--QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp EE--ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred ee--ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 21 111111111 457899999999999999 999999 544443
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=1.4e-12 Score=138.84 Aligned_cols=267 Identities=7% Similarity=-0.048 Sum_probs=182.4
Q ss_pred eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeE
Q 004410 254 QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (755)
Q Consensus 254 s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~ 333 (755)
+.++.|.++|..+.... ...+....-.........|.+. +++++++...++.|.+||..+++.+..+.
T Consensus 14 ~~~~~l~~~d~~t~~~~-~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~---------- 81 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVE-NEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT---------- 81 (328)
T ss_dssp SCCBEEEEEETTTTEEE-CSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE----------
T ss_pred CCCceEEEEECCCCEEh-hhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC----------
Confidence 34889999998765421 1111000000112346777774 45566666778999999998887544331
Q ss_pred EeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEe-CCCcEE
Q 004410 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS-ADKTVR 412 (755)
Q Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s-~Dg~V~ 412 (755)
.......+++++++.++.+. .++.|.
T Consensus 82 -----------------------------------------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~ 108 (328)
T 3dsm_A 82 -----------------------------------------------------GFTSPRYIHFLSDEKAYVTQIWDYRIF 108 (328)
T ss_dssp -----------------------------------------------------CCSSEEEEEEEETTEEEEEEBSCSEEE
T ss_pred -----------------------------------------------------CCCCCcEEEEeCCCeEEEEECCCCeEE
Confidence 12456778898888555555 899999
Q ss_pred EEeCCCCeEEEEEecCC------cEEEEEEeeCCCCEEEEEe-CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeE
Q 004410 413 LWQVGIDRCLRVFSHNN------YVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG 485 (755)
Q Consensus 413 iWdl~s~~~~~~~~h~~------~V~~i~fsp~d~~~l~sgs-~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~l 485 (755)
+||+.+++....+.... ....+++ . ++.++++.. .++.|.++|+.+++++...........++++|+|+++
T Consensus 109 ~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~ 186 (328)
T 3dsm_A 109 IINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMW 186 (328)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEE
T ss_pred EEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEE
Confidence 99999999888776444 6677887 4 555555554 4899999999999887655555567789999999876
Q ss_pred EEEeCC----------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee
Q 004410 486 IVGTMT----------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG 555 (755)
Q Consensus 486 a~gs~d----------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~ 555 (755)
+++..+ +.|.++|..++++.....+ ........++|+| +++.|+++.. .|.+||..+...
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-------~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF-------KLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC-------CTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSC
T ss_pred EEECCCccCCccccCCceEEEEECCCCeEEEEEec-------CCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCce
Confidence 665554 7899999999887643221 1124678999999 7777777654 899999876432
Q ss_pred eEEEeeeccCCceEEEEEec-CCCEEEEE----eCCCcEEEEEcCCCC
Q 004410 556 KFKASAFRVAGSQMFATFTS-DGKHVVSP----SEDSNIYIWNYSNQD 598 (755)
Q Consensus 556 ~~~~~~~~~~~~v~~l~fsp-dg~~L~sg----s~Dg~I~iWd~~~~~ 598 (755)
...............++++| ++.++++. ..++.|.+||.. ++
T Consensus 257 ~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 257 PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 11110011135678999999 55666665 578999999987 65
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=2.8e-12 Score=133.91 Aligned_cols=242 Identities=10% Similarity=0.029 Sum_probs=167.8
Q ss_pred eeeecccccEEEEEEecCCC-EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~-~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
+.+..+.....+++|+|+|+ +++++..++.|.+|+..++ ..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~------------------------------------ 62 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS------------------------------------ 62 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE------------------------------------
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE------------------------------------
Confidence 34455666788999999998 7888889999999998654 11
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-----cCCc
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNY 430 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-----h~~~ 430 (755)
.+..+...+.++++++++ .+++...++.|.+||..+++...... ....
T Consensus 63 --------------------------~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 116 (296)
T 3e5z_A 63 --------------------------PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNS 116 (296)
T ss_dssp --------------------------EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCC
T ss_pred --------------------------EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCC
Confidence 122345568899999999 55555556899999998887655442 2245
Q ss_pred EEEEEEeeCCCCEEEEE----e-------------CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCc
Q 004410 431 VTSVAFNPVDDNYFISG----S-------------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN 493 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sg----s-------------~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~ 493 (755)
+..++++| +++++++. + ..+.|..++.. ++.............++|+|+|+.+++.+.++.
T Consensus 117 ~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~ 194 (296)
T 3e5z_A 117 PNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNA 194 (296)
T ss_dssp CCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTE
T ss_pred CCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCe
Confidence 67899999 89988873 3 13466666665 555555566667899999999999977777899
Q ss_pred EEEEECC-CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEE
Q 004410 494 CRFYDIK-DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFAT 572 (755)
Q Consensus 494 I~iwD~~-~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~ 572 (755)
|.+||+. ++.+...... +. .....+.++++.+ ++.++++. ++.|.+|+.... ..... ..+.. +.+++
T Consensus 195 i~~~~~~~~g~~~~~~~~-~~----~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~g~-~~~~~--~~~~~-~~~~~ 262 (296)
T 3e5z_A 195 THRYCLNARGETEYQGVH-FT----VEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPDGD-ELGRV--LTPQT-TSNLC 262 (296)
T ss_dssp EEEEEECSSSCEEEEEEE-EC----CSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTTSC-EEEEE--ECSSC-CCEEE
T ss_pred EEEEEECCCCcCcCCCeE-ee----CCCCCCCeEEECC-CCCEEEEc--CCeEEEECCCCC-EEEEE--ECCCC-ceeEE
Confidence 9999997 4544011111 11 1334567899999 77755555 889999997632 22222 33444 88999
Q ss_pred E-ecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 573 F-TSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 573 f-spdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
| +|+++.|++++.+ .|.-++..+.+
T Consensus 263 f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 263 FGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp EESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred EECCCCCEEEEEcCC-eEEEEEccccc
Confidence 9 5899999988876 45555555443
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=7.4e-13 Score=156.34 Aligned_cols=245 Identities=13% Similarity=0.085 Sum_probs=168.4
Q ss_pred cccccEEEEEEecCCCEEEEEcCCC-----cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDG-----TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg-----~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
+|...+..++|||||++||.+..++ .|++||+.+++.....
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~---------------------------------- 167 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV---------------------------------- 167 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE----------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc----------------------------------
Confidence 4556789999999999999876543 8999999888643210
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCc----------------EEEEeCCCC
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT----------------VRLWQVGID 419 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~----------------V~iWdl~s~ 419 (755)
+.. ..+..++|+||| .|+.++.++. |++|++.++
T Consensus 168 ---------------------------~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~ 218 (710)
T 2xdw_A 168 ---------------------------LER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD 218 (710)
T ss_dssp ---------------------------EEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred ---------------------------ccC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence 000 114568999999 8888887766 999999887
Q ss_pred eE--EEEEe---cCCcEEEEEEeeCCCCEEEEEeC-----CCcEEEEEcCC------C--eEEEeccCCcceEEEEEccC
Q 004410 420 RC--LRVFS---HNNYVTSVAFNPVDDNYFISGSI-----DGKVRIWEVRR------C--QVVDYTDIREIVSAVCYCPD 481 (755)
Q Consensus 420 ~~--~~~~~---h~~~V~~i~fsp~d~~~l~sgs~-----Dg~V~iwdl~~------~--~~~~~~~~~~~V~~v~~spd 481 (755)
+. ...+. +...+..+.|+| ++++|+.++. +..|++||+.+ + ....+..+...+.. .|+|+
T Consensus 219 ~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~d 296 (710)
T 2xdw_A 219 QSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNE 296 (710)
T ss_dssp GGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEE
T ss_pred cccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEecc
Confidence 62 22332 456688999999 9998887765 56899999986 4 34555555555554 58899
Q ss_pred CCeEEEEeCCC----cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE--EEEECCccee
Q 004410 482 GKGGIVGTMTG----NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV--RVLCGENVVG 555 (755)
Q Consensus 482 g~~la~gs~dg----~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I--~iwd~~~~~~ 555 (755)
|+.|+..+..+ .|.+||+.++.... .. .+... .....+..+.|++ ++.++++...++.. .+|+..+...
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~-~l~~~--~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTDPEESK-WK-VLVPE--HEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL 371 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCCGGG-CE-EEECC--CSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCCccc-ce-eccCC--CCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE
Confidence 99888876543 59999998763200 00 01110 0113578899986 77788888888854 5566544332
Q ss_pred eEEEeeeccCCceEEEEEecCCCEEEEE-e---CCCcEEEEEcCCCC
Q 004410 556 KFKASAFRVAGSQMFATFTSDGKHVVSP-S---EDSNIYIWNYSNQD 598 (755)
Q Consensus 556 ~~~~~~~~~~~~v~~l~fspdg~~L~sg-s---~Dg~I~iWd~~~~~ 598 (755)
.... ..+.+.+..++++|+++.|+.. + ..+.|++||+.+++
T Consensus 372 ~~~l--~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 372 LKIF--PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEE--CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEec--CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2222 3346778889999999876633 2 35789999998876
No 182
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.55 E-value=4.3e-13 Score=144.84 Aligned_cols=254 Identities=11% Similarity=0.022 Sum_probs=169.3
Q ss_pred ceeecCCCCeeEEee----------CCCeEEEEECCCCcccccccccceeeec------ccccEEEEEEecCCCEEEEEc
Q 004410 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLA------HEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 240 ~~~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~~~l~~------H~~~V~~l~fspdg~~LaSgs 303 (755)
.++|+|||++|+++. .++.|.+||..+... .+++.. +......++|+|||++|+++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-------~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n 126 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-------EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN 126 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-------EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-------EEEEEcCccccccCCCcceEEECCCCCEEEEEC
Confidence 589999999998876 367899999764321 122221 223456789999999999886
Q ss_pred C--CCcEEEEEccCCeeeee-eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 304 E--DGTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 304 ~--Dg~I~vWdv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
. ++.|.+||+.+++.+.. +...
T Consensus 127 ~~~~~~v~v~d~~~~~~~~~~i~~~------------------------------------------------------- 151 (361)
T 2oiz_A 127 ASPATSIGIVDVAKGDYVEDVTAAA------------------------------------------------------- 151 (361)
T ss_dssp ESSSEEEEEEETTTTEEEEEEGGGT-------------------------------------------------------
T ss_pred CCCCCeEEEEECCCCcEEEEEecCC-------------------------------------------------------
Confidence 4 57999999988865543 2210
Q ss_pred ceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CeEEEEE------e-cCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVF------S-HNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s-~~~~~~~------~-h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
....+.+.|++ .+++.+.||.+.+|++.. ++..... . .... ..+.+.| ++..++..+.+
T Consensus 152 ---------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~ 220 (361)
T 2oiz_A 152 ---------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYY 220 (361)
T ss_dssp ---------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTT
T ss_pred ---------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeCC
Confidence 01123455554 667778888888888754 5444221 1 1111 2233466 67777777889
Q ss_pred CcEEEEEcCCCeEE--E-eccC----------CcceEEEEEccCCCeEEEEeC-----------CCcEEEEECCCCeEee
Q 004410 451 GKVRIWEVRRCQVV--D-YTDI----------REIVSAVCYCPDGKGGIVGTM-----------TGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 451 g~V~iwdl~~~~~~--~-~~~~----------~~~V~~v~~spdg~~la~gs~-----------dg~I~iwD~~~~~~~~ 506 (755)
+.|.++|+...... . +... ......++|+|+++.++++.. .+.|.+||+.+++.+.
T Consensus 221 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~ 300 (361)
T 2oiz_A 221 GNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA 300 (361)
T ss_dssp SEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE
T ss_pred CeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE
Confidence 99999999754322 1 1100 011123789999998887654 3479999999998776
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK 578 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~ 578 (755)
.... +. ..+++|+| ++++|+++.. +.|.+||..+...+..............++++|+|+
T Consensus 301 ~i~~--------~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 301 RIPG--------RD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEC--------TT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEec--------CC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 4321 22 89999999 8888888876 999999998862233332234566778899999986
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=2.5e-11 Score=126.04 Aligned_cols=277 Identities=6% Similarity=0.042 Sum_probs=190.5
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
..+.+++++|+|.++++...++.|.+|+.. .. +..+ .+..+...+.+|+++++|.++++...++.|..|+..
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~--~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GK--ITEY----PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CC--EEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CC--eEEe----cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 345568999999987776668899999976 22 1111 112245679999999999988888778889999864
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
++. ..+. +..+...+..++
T Consensus 87 g~~-~~~~------------------------------------------------------------~~~~~~~~~~i~ 105 (299)
T 2z2n_A 87 GII-KEYT------------------------------------------------------------LPNPDSAPYGIT 105 (299)
T ss_dssp SCE-EEEE------------------------------------------------------------CSSTTCCEEEEE
T ss_pred CcE-EEEe------------------------------------------------------------CCCcCCCceeeE
Confidence 221 1100 011234678899
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe--ccCC
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIR 470 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~--~~~~ 470 (755)
+.+++ .+++...++.|.+||. +++..... .....+..+++.+ +++++++...++.|..||. +++.... ....
T Consensus 106 ~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~ 182 (299)
T 2z2n_A 106 EGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPA 182 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred ECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCC
Confidence 99988 4455556789999998 55544332 2456789999998 8888887777889999999 6665543 2334
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
..+..++++++|...++...++.|.+||. ++.... . .. ......+.++++.+ ++.++++...++.|.+||.
T Consensus 183 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~--~~----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 183 SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-F--KI----PTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-E--EC----SSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET
T ss_pred CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-E--EC----CCCCCCceeEEECC-CCCEEEeccCCceEEEECC
Confidence 56889999999987666666889999999 665432 1 11 12346789999999 6776666557889999998
Q ss_pred CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 551 ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 551 ~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
......+.. ..+...+.++++ ++|.++++.. .+.|..++..++
T Consensus 254 ~g~~~~~~~--~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 254 NNIIEEYPI--QIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TTEEEEEEC--SSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCceEEEeC--CCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 432222211 234467889999 8888777665 577888887654
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=4e-11 Score=136.57 Aligned_cols=289 Identities=12% Similarity=0.099 Sum_probs=194.6
Q ss_pred cceeecCCCCeeEEeeCCCeEEEEECC--CCcccccccccceeeecccccEEEEEEe----cCCCEEEEEcC-CCcEEEE
Q 004410 239 GSATLKPGDHELTLGQRMRRVRVHPVK--KQSRELSSLYTGQEFLAHEGSILTMKFS----LDGQYLASGGE-DGTVRVW 311 (755)
Q Consensus 239 ~~~~~spdg~~lasgs~dg~V~Vw~~~--~~~~~~~~~~~~~~l~~H~~~V~~l~fs----pdg~~LaSgs~-Dg~I~vW 311 (755)
..+.|+|||+++++++.++.|.+||+. +. +.+ .++.... ....++|+ |||++|+++.. ++.|.|+
T Consensus 200 ~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v------~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 200 HISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTV------AEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEE------EEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred cceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEe------EEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence 358999999999999999999999985 22 111 2333322 35789999 69999888775 4899999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC-CCC
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSE 390 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~ 390 (755)
|..+.+.+..+....... .....| ...
T Consensus 272 D~~t~~~~~~i~~~~~~~----------------------------------------------------~~~~~~p~~r 299 (567)
T 1qks_A 272 DGETLEPKKIQSTRGMTY----------------------------------------------------DEQEYHPEPR 299 (567)
T ss_dssp ETTTCCEEEEEECCEECT----------------------------------------------------TTCCEESCCC
T ss_pred ECCCCcEEEEEecccccc----------------------------------------------------ccccccCCCc
Confidence 998887765544211000 000012 125
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEE--EEecCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEEcCCCeEEE
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~--~~~h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iwdl~~~~~~~ 465 (755)
+..+..++++ .++....+|.|.++|....+.+. .+.......++.|+| ++++|+++. .+++|.++|+.+++++.
T Consensus 300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEE
Confidence 6677788876 56666778999999988764433 334666788999999 888877665 57899999999998774
Q ss_pred eccC------CcceEEEEEccCCCeEEE-Ee-CCCcEEEEECCC-------CeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 466 YTDI------REIVSAVCYCPDGKGGIV-GT-MTGNCRFYDIKD-------NQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 466 ~~~~------~~~V~~v~~spdg~~la~-gs-~dg~I~iwD~~~-------~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
.... ...... -++|++..+++ +. .++.|.++|... .+.+..... .+..-..+..+|
T Consensus 379 ~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~--------~g~g~~~i~~~p 449 (567)
T 1qks_A 379 IEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA--------LGGGSLFIKTHP 449 (567)
T ss_dssp EEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--------SCSCCCCEECCT
T ss_pred EEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec--------CCCCCEEEEeCC
Confidence 3332 111112 26887555544 43 468999999987 334332211 112223466889
Q ss_pred CCCCEEEEEEC-------CCcEEEEECCcc-----eeeEEEeee-------ccCCceEEEEEecCCCEEEEEe-----CC
Q 004410 531 SDPSKVIVTSA-------DSLVRVLCGENV-----VGKFKASAF-------RVAGSQMFATFTSDGKHVVSPS-----ED 586 (755)
Q Consensus 531 ~d~~~l~s~s~-------Dg~I~iwd~~~~-----~~~~~~~~~-------~~~~~v~~l~fspdg~~L~sgs-----~D 586 (755)
+++++.+... .+.|.|+|..+. ...+..... .....+..+.|+++|+++..+. .+
T Consensus 450 -~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~ 528 (567)
T 1qks_A 450 -NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQE 528 (567)
T ss_dssp -TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSC
T ss_pred -CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCC
Confidence 8888888763 459999998876 322222111 1235788999999999887763 37
Q ss_pred CcEEEEEcCCCC
Q 004410 587 SNIYIWNYSNQD 598 (755)
Q Consensus 587 g~I~iWd~~~~~ 598 (755)
+.|.|+|..+.+
T Consensus 529 ~~i~v~D~~t~~ 540 (567)
T 1qks_A 529 SALVVVDDKTLE 540 (567)
T ss_dssp CEEEEEETTTTE
T ss_pred CcEEEEECCCce
Confidence 999999999876
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=5.1e-12 Score=129.58 Aligned_cols=239 Identities=10% Similarity=0.004 Sum_probs=168.1
Q ss_pred cEEEEEEecCCCEEE-EEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 286 SILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 286 ~V~~l~fspdg~~La-Sgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
...+|+++++|++++ +...++.|.+|+..+..... +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~------------------------------------------ 61 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-L------------------------------------------ 61 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-C------------------------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-E------------------------------------------
Confidence 678899999999777 54778899999864432100 0
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCE
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~ 443 (755)
...+...+.++++.+++.|+.+..++.|.+||.......... .....+..++++| ++++
T Consensus 62 -------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l 121 (270)
T 1rwi_B 62 -------------------PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAV 121 (270)
T ss_dssp -------------------CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCE
T ss_pred -------------------eeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCE
Confidence 011223456789999885544444889999998766543222 2336789999999 8888
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEe-ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCC
Q 004410 444 FISGSIDGKVRIWEVRRCQVVDY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~~~~-~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
+++...++.|.+|+..+...... ......+..++++++|+.+++...++.|.+||..+...... .......
T Consensus 122 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~ 193 (270)
T 1rwi_B 122 YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--------PFTDITA 193 (270)
T ss_dssp EEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--------CCSSCCS
T ss_pred EEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--------cccCCCC
Confidence 88877889999998766544322 22234678899999998777666788999999987654321 1112256
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.++++.+ ++.++++...++.|.+|+.......... ..+...+.+++++++|+++++...++.|+++++...+
T Consensus 194 p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 194 PWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLP--FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECC--CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeec--cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 88999999 6777777777899999998654332211 2233568999999999988999999999999987654
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.47 E-value=7e-12 Score=130.88 Aligned_cols=224 Identities=12% Similarity=0.042 Sum_probs=156.8
Q ss_pred CcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 238 HGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 238 ~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
..+++|+|+|+ +++++..++.|.+|+.... . +.+..+...+.+|+|+|+|+++++...++.|.+||..++
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~------~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---L------SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---E------EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---e------EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 34589999998 7888888999999997654 1 234456778999999999999888877889999998776
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+........ .......+.++++
T Consensus 101 ~~~~~~~~~----------------------------------------------------------~~~~~~~~~~i~~ 122 (296)
T 3e5z_A 101 EWESIADSF----------------------------------------------------------EGKKLNSPNDVCL 122 (296)
T ss_dssp CEEEEECEE----------------------------------------------------------TTEECCCCCCEEE
T ss_pred cEEEEeecc----------------------------------------------------------CCCCCCCCCCEEE
Confidence 532110000 0001234567889
Q ss_pred cCCC-eEEE----Ee-------------CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 397 SKNG-FLLS----SS-------------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 397 s~~~-~L~s----~s-------------~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
.++| .+++ ++ ..+.|..++.. ++......+......++|+| +++++++.+.++.|++|++
T Consensus 123 d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~ 200 (296)
T 3e5z_A 123 APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCL 200 (296)
T ss_dssp CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEE
Confidence 9999 4444 22 13456666665 55555556777889999999 8888877888899999999
Q ss_pred C-CCeE---E-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE-cCCC
Q 004410 459 R-RCQV---V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF-SPSD 532 (755)
Q Consensus 459 ~-~~~~---~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f-sp~d 532 (755)
. ++.+ . .+......+..++++++|++.++. ++.|.+||.. ++.+..+ ..+.. +++++| .| +
T Consensus 201 ~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~--------~~~~~-~~~~~f~~~-d 267 (296)
T 3e5z_A 201 NARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV--------LTPQT-TSNLCFGGP-E 267 (296)
T ss_dssp CSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE--------ECSSC-CCEEEEEST-T
T ss_pred CCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE--------ECCCC-ceeEEEECC-C
Confidence 7 4544 1 122344556789999999855554 8899999987 4443321 12334 888999 46 8
Q ss_pred CCEEEEEECCC
Q 004410 533 PSKVIVTSADS 543 (755)
Q Consensus 533 ~~~l~s~s~Dg 543 (755)
++.|++++.++
T Consensus 268 ~~~L~v~t~~~ 278 (296)
T 3e5z_A 268 GRTLYMTVSTE 278 (296)
T ss_dssp SCEEEEEETTE
T ss_pred CCEEEEEcCCe
Confidence 88888888764
No 187
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=2.3e-12 Score=152.80 Aligned_cols=282 Identities=14% Similarity=0.059 Sum_probs=173.6
Q ss_pred ecCCCCeeEEeeCCCe---EEEEECCCC---ccccccc-ccceeeecccccEEEEEEecCCCEEEEEcCC-----CcEEE
Q 004410 243 LKPGDHELTLGQRMRR---VRVHPVKKQ---SRELSSL-YTGQEFLAHEGSILTMKFSLDGQYLASGGED-----GTVRV 310 (755)
Q Consensus 243 ~spdg~~lasgs~dg~---V~Vw~~~~~---~~~~~~~-~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D-----g~I~v 310 (755)
.+|+|++++....++. ..+|..... ......+ ...+.-.+|...+..++|||||++||.+..+ ..|++
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 3499998887654332 455543211 1101100 0000112355578999999999999987654 46999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.+++.+... + +...
T Consensus 194 ~dl~tg~~~~~~----------------------------------------------------------~-----~~~~ 210 (741)
T 1yr2_A 194 VGVADGKPLADE----------------------------------------------------------L-----KWVK 210 (741)
T ss_dssp EETTTCCEEEEE----------------------------------------------------------E-----EEEE
T ss_pred EECCCCCCCCcc----------------------------------------------------------C-----CCce
Confidence 999888643210 0 0001
Q ss_pred EEEEEEcCCCeEEEEeCCC--------------cEEEEeCCCCeE--EEEEe---cCCcEEEEEEeeCCCCEEEEEeCCC
Q 004410 391 VLDLSWSKNGFLLSSSADK--------------TVRLWQVGIDRC--LRVFS---HNNYVTSVAFNPVDDNYFISGSIDG 451 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s~Dg--------------~V~iWdl~s~~~--~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg 451 (755)
+..++|+||..|+.++.++ .|++|++.+++. ...+. +...+..+.|+| ++++|+..+.++
T Consensus 211 ~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~ 289 (741)
T 1yr2_A 211 FSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEG 289 (741)
T ss_dssp SCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECT
T ss_pred eccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEcc
Confidence 2346788876555555544 389999987752 23333 334689999999 999888777544
Q ss_pred -----cEEEEEcCCC--e-EEEeccCCcceEEEEEccCCCeEEEEeCC----CcEEEEECCCCe-EeeeeeEEecccccC
Q 004410 452 -----KVRIWEVRRC--Q-VVDYTDIREIVSAVCYCPDGKGGIVGTMT----GNCRFYDIKDNQ-LYQQNQICLQGKKKL 518 (755)
Q Consensus 452 -----~V~iwdl~~~--~-~~~~~~~~~~V~~v~~spdg~~la~gs~d----g~I~iwD~~~~~-~~~~~~~~~~~~~~~ 518 (755)
.|++||+.++ + ...+..+...+.... +|+|+.|+..+.+ +.|.+||+.++. .... .+. .
T Consensus 290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~---l~~----~ 361 (741)
T 1yr2_A 290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT---VVP----E 361 (741)
T ss_dssp TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE---EEC----C
T ss_pred CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEE---Eec----C
Confidence 8999999877 5 555555555555553 4999999888764 459999998742 1111 111 1
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE----eCCCcEEEEEc
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP----SEDSNIYIWNY 594 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg----s~Dg~I~iWd~ 594 (755)
+...+..+.+. ++.++++...|+..+||.................+.+..++++|+++.|+.. ...+.|++||+
T Consensus 362 ~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 362 SKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp CSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred CCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 22346677776 5578888888998887765421112222112245678889999998866532 23578999999
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.+++
T Consensus 440 ~tg~ 443 (741)
T 1yr2_A 440 ATAK 443 (741)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8876
No 188
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.47 E-value=1.9e-10 Score=124.45 Aligned_cols=284 Identities=10% Similarity=-0.005 Sum_probs=183.8
Q ss_pred ecCCCCeeEEeeC--CC---eEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CCCc
Q 004410 243 LKPGDHELTLGQR--MR---RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGT 307 (755)
Q Consensus 243 ~spdg~~lasgs~--dg---~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~Dg~ 307 (755)
..|+++++++... .. .|.++|..+... + .++.....+ .++++|||++|+.+. .++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~-~------~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~ 98 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-L------GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeE-E------EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence 4477776666543 22 889999775432 1 233333333 899999999999885 3678
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|.+||..+.+.+..+..... .. +. +
T Consensus 99 v~viD~~t~~~~~~i~~~~~-----------------------------------------------------~~-~~-~ 123 (373)
T 2mad_H 99 VEVFDPVTFLPIADIELPDA-----------------------------------------------------PR-FD-V 123 (373)
T ss_pred EEEEECCCCcEEEEEECCCc-----------------------------------------------------cc-cc-c
Confidence 99999987776554432100 00 00 1
Q ss_pred CCCEEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCeEEEE-EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSA--DKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~--Dg~V~iWdl~s~~~~~~-~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
......++|+|+| +|+.+.. ++.|.++| .+++.+.. +.... ++.+.|...+.+++.+.||++.++|. +++.
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~ 198 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA 198 (373)
T ss_pred CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence 1223478999999 7777664 57899999 99998887 65433 24556645567788889999999999 7776
Q ss_pred EEecc------CCcc-eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc----ccCCCCCeEEEEEcCCC
Q 004410 464 VDYTD------IREI-VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK----KKLPGKRITGFQFSPSD 532 (755)
Q Consensus 464 ~~~~~------~~~~-V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~----~~~~~~~I~~v~fsp~d 532 (755)
+.... .... .....+.+++..++..+..+.+.+.|+.+........+.+... ..........+.++| +
T Consensus 199 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d 277 (373)
T 2mad_H 199 AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-S 277 (373)
T ss_pred EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-C
Confidence 62211 1111 2335677777666666678899999997654322111111110 000112244578899 6
Q ss_pred CCEEEEEEC----------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCCc
Q 004410 533 PSKVIVTSA----------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPS-EDSNIYIWNYSNQDK 599 (755)
Q Consensus 533 ~~~l~s~s~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs-~Dg~I~iWd~~~~~~ 599 (755)
+..+++... .+.|.++|..+....... ........++|+|||+ +++++. .++.|.+||+.+++.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i---~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI---SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE---ECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 676666543 357999998876554443 2233578999999999 777777 589999999998873
No 189
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.47 E-value=6.1e-11 Score=135.09 Aligned_cols=278 Identities=10% Similarity=0.057 Sum_probs=186.4
Q ss_pred ecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc--CCeeee
Q 004410 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLD 320 (755)
Q Consensus 243 ~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~--~~~~~~ 320 (755)
.+|.+.++++...++.|.|+|..+... + .++.. ...+..+.|+|||++|++++.|+.|.+||+. +++.+.
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v-~------~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEI-K------TVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCE-E------EEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeE-E------EEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE
Confidence 345556777778899999999875432 1 12221 2346689999999999999999999999985 554332
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc---
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS--- 397 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s--- 397 (755)
++. . ......++|+
T Consensus 235 ~i~--------------------------------------------------------------~-G~~P~~ia~s~~~ 251 (567)
T 1qks_A 235 EIK--------------------------------------------------------------I-GSEARSIETSKME 251 (567)
T ss_dssp EEE--------------------------------------------------------------C-CSEEEEEEECCST
T ss_pred EEe--------------------------------------------------------------c-CCCCceeEEcccc
Confidence 221 1 1234678999
Q ss_pred -CCC-eEEEE-eCCCcEEEEeCCCCeEEEEEec------------CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 398 -KNG-FLLSS-SADKTVRLWQVGIDRCLRVFSH------------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 398 -~~~-~L~s~-s~Dg~V~iWdl~s~~~~~~~~h------------~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
|+| +++++ ..+++|.++|..+.+.++.+.- ...+..+.+++....+++....+|+|.++|..+..
T Consensus 252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~ 331 (567)
T 1qks_A 252 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 331 (567)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence 688 55544 4669999999999999887741 12678888888444555666677999999998754
Q ss_pred EE--EeccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 463 VV--DYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 463 ~~--~~~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.. ...........+.|+|+|++|+++. .++.|.++|+.++++..... ..+ ...|...-..+ ++|..+...++.
T Consensus 332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~--vgg-~~Phpg~g~~~-~~p~~g~v~~t~ 407 (567)
T 1qks_A 332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED--TGG-QTPHPGRGANF-VHPTFGPVWATS 407 (567)
T ss_dssp EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE--CSS-SSBCCTTCEEE-EETTTEEEEEEE
T ss_pred cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe--ccC-cCCCCccceee-ECCCCCcEEEeC
Confidence 32 2333445677899999999988766 57889999999998765432 101 12222222222 577334444444
Q ss_pred E-CCCcEEEEECCc-------ceeeEEEeeeccCCceEEEEEecCCCEEEEEeC-------CCcEEEEEcCCC
Q 004410 540 S-ADSLVRVLCGEN-------VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE-------DSNIYIWNYSNQ 597 (755)
Q Consensus 540 s-~Dg~I~iwd~~~-------~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~-------Dg~I~iWd~~~~ 597 (755)
. .++.|.++|... ....... ......-..+..+|++++|.+... .+.|.++|+.+.
T Consensus 408 ~~g~~~Vsvid~~~~~~~~~~~kvv~~i--~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 408 HMGDDSVALIGTDPEGHPDNAWKILDSF--PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEE--ECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCCeEEEecCCCCCCccccCEEEEEE--ecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 3 468999999876 2222222 212222244678999999998763 459999999876
No 190
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.45 E-value=5.1e-12 Score=134.80 Aligned_cols=183 Identities=9% Similarity=0.056 Sum_probs=126.9
Q ss_pred CEEEEEEcCCC-eEEEEeCC---C--cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC-------------
Q 004410 390 EVLDLSWSKNG-FLLSSSAD---K--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID------------- 450 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~D---g--~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D------------- 450 (755)
.+..++|+|+| .|+.++.+ + .|.+||+.+++......+.. +..++|+| +++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------C
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEccc
Confidence 46789999999 77776654 2 48888999988877776555 99999999 89888887642
Q ss_pred --------------CcEEEEEcCCCeE-EEeccCCcceEEEEEccCCCeEEEEeCCC-------cEEEEECCCCeEeeee
Q 004410 451 --------------GKVRIWEVRRCQV-VDYTDIREIVSAVCYCPDGKGGIVGTMTG-------NCRFYDIKDNQLYQQN 508 (755)
Q Consensus 451 --------------g~V~iwdl~~~~~-~~~~~~~~~V~~v~~spdg~~la~gs~dg-------~I~iwD~~~~~~~~~~ 508 (755)
..|++||+.+++. ..+.. . .+..++|+||| .++++..++ ...||.+.+++....
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l- 213 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM- 213 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE-
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe-
Confidence 5799999999887 44444 3 78899999999 777775542 334444335543221
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECC--------CcEEEEECCcceeeEEEeeeccCCceEE-EEEecCCCE
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD--------SLVRVLCGENVVGKFKASAFRVAGSQMF-ATFTSDGKH 579 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D--------g~I~iwd~~~~~~~~~~~~~~~~~~v~~-l~fspdg~~ 579 (755)
. . + ..+..+ +| ++++|+.++.+ ..|.+|| +. ........+...+.. +.|+ || +
T Consensus 214 ~----~----~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~--~~~~l~~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 214 F----E----K-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GK--EVMGILDEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp E----E----E-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SS--CEEESSTTCCSEEEEEEEET-TE-E
T ss_pred c----c----C-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CC--ceEeccccCCcccCCccEEc-Cc-E
Confidence 1 1 1 234443 88 77777776644 3677787 22 222222345567776 8999 98 9
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 004410 580 VVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 580 L~sgs~Dg~I~iWd~~~~ 597 (755)
+++++.++.++|| +.++
T Consensus 276 ~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp EEEEEETTEEEEE-EESS
T ss_pred EEEEecCCcEEEE-EcCC
Confidence 9999999999999 8743
No 191
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.44 E-value=5.4e-11 Score=124.76 Aligned_cols=247 Identities=13% Similarity=0.134 Sum_probs=167.5
Q ss_pred cccEEEEEEecCCCEEEE-------EcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 284 EGSILTMKFSLDGQYLAS-------GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaS-------gs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
-....+++|+++|+++++ +..++.|.+|+..+++... +..
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~-------------------------------- 63 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICK-------------------------------- 63 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EEC--------------------------------
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEe--------------------------------
Confidence 345678999999988887 5678899999976664311 000
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC-CeEEEEeCCCcEEEEeCCCCeEEEE-Ee-----cCC
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRV-FS-----HNN 429 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~L~s~s~Dg~V~iWdl~s~~~~~~-~~-----h~~ 429 (755)
....++...+.++++.++ +.|+.++....|.+||.. ++.... .. ...
T Consensus 64 -------------------------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 117 (314)
T 1pjx_A 64 -------------------------PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQ 117 (314)
T ss_dssp -------------------------CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCB
T ss_pred -------------------------cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCcccc
Confidence 001123356889999999 766666666689999998 766544 32 124
Q ss_pred cEEEEEEeeCCCCEEEEEeCC---------------CcEEEEEcCCCeEEEeccCCcceEEEEEc----cCCCeEEEE-e
Q 004410 430 YVTSVAFNPVDDNYFISGSID---------------GKVRIWEVRRCQVVDYTDIREIVSAVCYC----PDGKGGIVG-T 489 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~D---------------g~V~iwdl~~~~~~~~~~~~~~V~~v~~s----pdg~~la~g-s 489 (755)
.+.++++++ +++++++...+ +.|..||.. ++.............++++ |+|+.|+++ .
T Consensus 118 ~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~ 195 (314)
T 1pjx_A 118 GCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAET 195 (314)
T ss_dssp CCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEET
T ss_pred CCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEEC
Confidence 588999999 88888877655 567788776 5555444444557889999 999776665 4
Q ss_pred CCCcEEEEECC-CCeEeeeeeEEecccccCCC-CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCc
Q 004410 490 MTGNCRFYDIK-DNQLYQQNQICLQGKKKLPG-KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGS 567 (755)
Q Consensus 490 ~dg~I~iwD~~-~~~~~~~~~~~~~~~~~~~~-~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 567 (755)
.++.|.+||+. ++......... ....+. ..+..+++.+ ++.++++...++.|.+||..+....... ..+...
T Consensus 196 ~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~--~~~~~~ 269 (314)
T 1pjx_A 196 PTKKLWSYDIKGPAKIENKKVWG---HIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRI--RCPFEK 269 (314)
T ss_dssp TTTEEEEEEEEETTEEEEEEEEE---ECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEE--ECSSSC
T ss_pred CCCeEEEEECCCCCccccceEEE---ECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEE--eCCCCC
Confidence 67899999986 44432111110 011122 4578899999 7888888888899999998743322222 224467
Q ss_pred eEEEEEecCCCEEE-EEeCCCcEEEEEcCCC
Q 004410 568 QMFATFTSDGKHVV-SPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 568 v~~l~fspdg~~L~-sgs~Dg~I~iWd~~~~ 597 (755)
+.+++|+++|++|+ +...++.|..|++...
T Consensus 270 ~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 270 PSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 89999999999554 5556789999998753
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.43 E-value=3.8e-10 Score=117.02 Aligned_cols=274 Identities=8% Similarity=0.075 Sum_probs=186.1
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
...+++++++|.+.++...++.|.+|+.. .. +..+ .+..+...+.+|+++++|+++++...++.|.+||.. +
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~--~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GR--IKEF----EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SC--EEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-Cc--eEEE----ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34458899999988877778999999976 22 1111 122344678999999999988887778889999875 4
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+.. .+. +......+.++++
T Consensus 93 ~~~-~~~------------------------------------------------------------~~~~~~~~~~i~~ 111 (300)
T 2qc5_A 93 GFT-EYP------------------------------------------------------------LPQPDSGPYGITE 111 (300)
T ss_dssp CEE-EEE------------------------------------------------------------CSSTTCCEEEEEE
T ss_pred CeE-Eec------------------------------------------------------------CCCCCCCCccceE
Confidence 321 110 0112345788999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEE-Ee-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec--cCCc
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIRE 471 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~-~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~--~~~~ 471 (755)
.+++ .+++...++.|..||.. ++.... +. ....+.++++.+ +++++++...++.|..+|. +++...+. ....
T Consensus 112 ~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 188 (300)
T 2qc5_A 112 GLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAA 188 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTC
T ss_pred CCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCC
Confidence 9888 44444457899999987 555432 22 456789999999 8887777766889999998 55554332 2345
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
.+..+++.++|...++....+.|.+||. ++..... .+ ......+.++++.+ ++.+.++...++.|.+++..
T Consensus 189 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~---~~----~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 189 APVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY---DI----PTPNARPHAITAGK-NSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE---EC----SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT
T ss_pred CcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE---EC----CCCCCCceEEEECC-CCCEEEeccCCCeEEEECCC
Confidence 6899999999976666666778999998 4443321 11 12345688999999 67766666567899999974
Q ss_pred cceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 552 NVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 552 ~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.....+.. ......+.+++++++|+++++.. . .|..+|..
T Consensus 260 g~~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 260 NTIQEYQL--QTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp SCEEEEEC--CSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CcEEEEEC--CccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 32222221 22345678899999998766655 4 77777653
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.43 E-value=5.9e-12 Score=133.65 Aligned_cols=201 Identities=13% Similarity=0.138 Sum_probs=143.6
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCC----CcEEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSID----GKVRIWE 457 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~D----g~V~iwd 457 (755)
+..+...+.+++|++++ .++++..++.|.+||..+++..... .+...+.+++++| +++++++...+ +.|.+||
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEEC
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEe
Confidence 44566677899999999 5556778899999999988876655 4678899999999 88888877766 6899999
Q ss_pred cCCCeEEEec---cCCcceEEEEEccCCCeEEEEeC------CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 458 VRRCQVVDYT---DIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 458 l~~~~~~~~~---~~~~~V~~v~~spdg~~la~gs~------dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
..++...... .....+..++++|+|+.+++... .+.|..||..+++...... ....+..++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~i~~ 189 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---------NISVANGIAL 189 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE---------EESSEEEEEE
T ss_pred CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec---------CCCcccceEE
Confidence 9887655221 23456899999999987766543 3567777776654432110 1135788999
Q ss_pred cCCCCCEE-EEEECCCcEEEEECCcc---eeeEEEe-e--eccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 529 SPSDPSKV-IVTSADSLVRVLCGENV---VGKFKAS-A--FRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 529 sp~d~~~l-~s~s~Dg~I~iwd~~~~---~~~~~~~-~--~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
+| +++.+ ++...++.|.+|+.... ...+... . ......+..++++++|+++++...++.|.+||.+
T Consensus 190 ~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 190 ST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp CT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 99 77655 44556789999998531 1111100 0 1111467889999999998888888999999974
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.42 E-value=1.8e-11 Score=144.36 Aligned_cols=240 Identities=8% Similarity=0.016 Sum_probs=158.6
Q ss_pred CcceeecCCCCeeEEeeCCC-----eEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc-----
Q 004410 238 HGSATLKPGDHELTLGQRMR-----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT----- 307 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg-----~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~----- 307 (755)
+..++|||||++||.+..++ .|+||++.++..... .+ +...+..++|+|||+.|+.++.++.
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------VL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------EE--EEECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------cc--cCcccceEEEEeCCCEEEEEEECCcccccc
Confidence 34589999999999765533 899999876543111 11 1123667999999999999988765
Q ss_pred -----------EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec
Q 004410 308 -----------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (755)
Q Consensus 308 -----------I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (755)
|++|++.++....
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~-------------------------------------------------------- 222 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSED-------------------------------------------------------- 222 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGC--------------------------------------------------------
T ss_pred ccccccCCCCEEEEEECCCCcccc--------------------------------------------------------
Confidence 7777776543100
Q ss_pred cCccceEecCCCCCEEEEEEcCCC-eEEEEeC-----CCcEEEEeCCC------C--eEEEEEecCCcEEEEEEeeCCCC
Q 004410 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA-----DKTVRLWQVGI------D--RCLRVFSHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 377 ~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~-----Dg~V~iWdl~s------~--~~~~~~~h~~~V~~i~fsp~d~~ 442 (755)
..+.....|...+..+.|+|+| +|+.++. +..|++||+.+ + .......+...+.. .|+| +++
T Consensus 223 --~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~-dg~ 298 (710)
T 2xdw_A 223 --ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTN-EGT 298 (710)
T ss_dssp --EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEE-ETT
T ss_pred --eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEec-cCC
Confidence 0011112355567889999999 6666554 57899999976 4 33333445555554 4788 777
Q ss_pred EEEEEeCC----CcEEEEEcCCCe---EEEeccCCc--ceEEEEEccCCCeEEEEeCCCc--EEEEECCCCeEeeeeeEE
Q 004410 443 YFISGSID----GKVRIWEVRRCQ---VVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGN--CRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 443 ~l~sgs~D----g~V~iwdl~~~~---~~~~~~~~~--~V~~v~~spdg~~la~gs~dg~--I~iwD~~~~~~~~~~~~~ 511 (755)
.|+..+.+ +.|.+||+.++. ...+..+.. .+..++|++++.++++...++. |.+||+.+++....+.
T Consensus 299 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~-- 376 (710)
T 2xdw_A 299 VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP-- 376 (710)
T ss_dssp EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--
T ss_pred EEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--
Confidence 76665543 369999998763 233444433 6888999888788888888885 6667876665443221
Q ss_pred ecccccCCCCCeEEEEEcCCCCCEEE-EEEC---CCcEEEEECCcce
Q 004410 512 LQGKKKLPGKRITGFQFSPSDPSKVI-VTSA---DSLVRVLCGENVV 554 (755)
Q Consensus 512 ~~~~~~~~~~~I~~v~fsp~d~~~l~-s~s~---Dg~I~iwd~~~~~ 554 (755)
.+...+..+.++| ++..++ +.+. .+.|.+||..+..
T Consensus 377 ------~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 377 ------LEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ------CCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ------CCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2345788899999 555554 4333 4789999987644
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.41 E-value=7.2e-11 Score=122.23 Aligned_cols=213 Identities=12% Similarity=-0.014 Sum_probs=158.7
Q ss_pred CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 295 dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
.+++|++++.|+.|.+||.++++.+.++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--------------------------------------------------- 32 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--------------------------------------------------- 32 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE---------------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC---------------------------------------------------
Confidence 46789999999999999998998655443
Q ss_pred eccCccceEecCCC-CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEeeCCCCEEEEEeC-C
Q 004410 375 RLLEKPLHEFQGHS-SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSI-D 450 (755)
Q Consensus 375 ~~~~~~~~~~~gh~-~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h--~~~V~~i~fsp~d~~~l~sgs~-D 450 (755)
.+. ..+.++.+.|+|.++. +.++.|..||. +++.+..+.. ...+.++.+.| +++++++.+. +
T Consensus 33 -----------~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~ 98 (276)
T 3no2_A 33 -----------LEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGHP 98 (276)
T ss_dssp -----------CCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEESTT
T ss_pred -----------CCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCCC
Confidence 122 3466788999994444 56788999999 8988888863 35788999999 9999999887 7
Q ss_pred CcEEEEEcCCCeEE-Eec------cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCe
Q 004410 451 GKVRIWEVRRCQVV-DYT------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523 (755)
Q Consensus 451 g~V~iwdl~~~~~~-~~~------~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I 523 (755)
+.|..+|. +++.+ .+. .+......+++.++|+++++...++.|..||.. ++.+..... ....
T Consensus 99 ~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~---------~~~~ 167 (276)
T 3no2_A 99 STILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL---------SGTP 167 (276)
T ss_dssp EEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---------SSCC
T ss_pred CEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC---------CCCc
Confidence 78888886 45544 322 122245567789999999999999999999998 777654332 1244
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeec----cCCceEEEEEecCCCEEEEEe
Q 004410 524 TGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFR----VAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~----~~~~v~~l~fspdg~~L~sgs 584 (755)
.++.+.+ ++..++++..++.|..+|..+........... ....+..++..++|.++++..
T Consensus 168 ~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 168 FSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred cceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 5677788 88889888888899999988766666553111 112378888999999988874
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.41 E-value=8.6e-11 Score=124.89 Aligned_cols=235 Identities=7% Similarity=-0.013 Sum_probs=164.5
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
+++. ++++.++...++.|.+||..+... .+++. .......|++++++++.++...++.|.+||..+++...
T Consensus 49 i~~~-~~~lyv~~~~~~~v~viD~~t~~~-------~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 49 MVIR-DGIGWIVVNNSHVIFAIDINTFKE-------VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETTTCCE-------EEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred EEEE-CCEEEEEEcCCCEEEEEECcccEE-------EEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence 4553 345555666789999999875432 12232 23568899999999655555588999999998887654
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
.+..... .++......+++ .++
T Consensus 120 ~i~~g~~---------------------------------------------------------~~~~~~p~~i~~-~~~ 141 (328)
T 3dsm_A 120 YIECPDM---------------------------------------------------------DMESGSTEQMVQ-YGK 141 (328)
T ss_dssp EEECTTC---------------------------------------------------------CTTTCBCCCEEE-ETT
T ss_pred EEEcCCc---------------------------------------------------------cccCCCcceEEE-ECC
Confidence 4432110 011112334555 345
Q ss_pred eEEEEe--CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC----------CcEEEEEcCCCeEEEecc
Q 004410 401 FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID----------GKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 401 ~L~s~s--~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D----------g~V~iwdl~~~~~~~~~~ 468 (755)
.|+.+. .++.|.++|+.+++.+..+........++++| ++++++++..+ +.|.++|..++++.....
T Consensus 142 ~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 142 YVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp EEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 555554 48999999999999988887666678899999 88877776654 789999999998774333
Q ss_pred C--CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE----ECC
Q 004410 469 I--REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT----SAD 542 (755)
Q Consensus 469 ~--~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~----s~D 542 (755)
. ......++++|+++.|+++.. .|.+||+.++++..... .........+++++|.++.++++. ..+
T Consensus 221 ~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~------~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~ 292 (328)
T 3dsm_A 221 FKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF------LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQ 292 (328)
T ss_dssp CCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS------BCCCSSCEEEEEECTTTCCEEEEECTTSSSE
T ss_pred cCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee------ecCCCCceEEEEEcCCCCeEEEEcccccccC
Confidence 3 346899999999999988765 89999999887532110 111245788999999666666666 578
Q ss_pred CcEEEEECC
Q 004410 543 SLVRVLCGE 551 (755)
Q Consensus 543 g~I~iwd~~ 551 (755)
+.|.+||..
T Consensus 293 ~~V~v~d~~ 301 (328)
T 3dsm_A 293 GIVYRYSPQ 301 (328)
T ss_dssp EEEEEECTT
T ss_pred CEEEEECCC
Confidence 899999976
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.39 E-value=4.2e-11 Score=122.73 Aligned_cols=236 Identities=8% Similarity=-0.044 Sum_probs=163.6
Q ss_pred cCcceeecCCCCeeE-EeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 237 RHGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 237 ~~~~~~~spdg~~la-sgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
....++++|+|++++ +...++.|.+|+......... ...+...+.+|+++++|+++++.. ++.|.+|+...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-------CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-------eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC
Confidence 344589999999777 547789999998654322111 112334678899999999777766 88999998754
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
.... .+ .......+.+++
T Consensus 97 ~~~~-~~-------------------------------------------------------------~~~~~~~p~~i~ 114 (270)
T 1rwi_B 97 NNQT-VL-------------------------------------------------------------PFDGLNYPEGLA 114 (270)
T ss_dssp SCCE-EC-------------------------------------------------------------CCCSCSSEEEEE
T ss_pred ceEe-ee-------------------------------------------------------------ecCCcCCCcceE
Confidence 3210 00 001224578899
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec-cCCcc
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIREI 472 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~-~~~~~ 472 (755)
+.+++ .+++...++.|.+|+..+....... .....+.+|+++| +++++++...++.|.+||.......... .....
T Consensus 115 ~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (270)
T 1rwi_B 115 VDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITA 193 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCS
T ss_pred ECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCC
Confidence 99988 5555566789999987665443222 2335678999999 8888888777899999999887665432 22367
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
+..++++++|..+++...++.|.+||..+...... .......+.++++.| ++.++++...++.|++++...
T Consensus 194 p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~--------~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 194 PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--------PFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC--------CCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECCCG
T ss_pred ceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee--------ccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcCCC
Confidence 89999999997666666788999999976543220 111235689999999 778888888899999998765
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.38 E-value=1.5e-11 Score=144.66 Aligned_cols=242 Identities=10% Similarity=-0.010 Sum_probs=158.1
Q ss_pred cCcceeecCCCCeeE-----EeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc----
Q 004410 237 RHGSATLKPGDHELT-----LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT---- 307 (755)
Q Consensus 237 ~~~~~~~spdg~~la-----sgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~---- 307 (755)
.+..++|||||++|| .|+.+..|+||++.++..... ..+.... ...++|+|||+.|+.++.|..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----DVIEGGK--YATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----CCBSCCT--TCCCEECTTSSEEEEEECCCCTTSC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----cccCccc--ccceEEecCCCEEEEEEecCCCCCc
Confidence 345689999999999 445567899999887653201 0111111 157899999999999988776
Q ss_pred ---------EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 308 ---------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 308 ---------I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
|++|++.++....
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~---------------------------------------------------------- 216 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKD---------------------------------------------------------- 216 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGC----------------------------------------------------------
T ss_pred cccCCCCCEEEEEECCCCchhc----------------------------------------------------------
Confidence 8999887664110
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEeCCC----cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEe---CC
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK----TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS---ID 450 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg----~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs---~D 450 (755)
..+.....|...+..+.|+|+| +|+.++.++ .|++|+..+++......+...+....+ + ++.+++... .+
T Consensus 217 ~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~ 294 (695)
T 2bkl_A 217 TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPR 294 (695)
T ss_dssp EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-E-TTEEEEEECTTCTT
T ss_pred eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-c-CCcEEEEECCCCCC
Confidence 0011223455678899999999 777766655 688888766666555566666677766 5 555545444 25
Q ss_pred CcEEEEEcCCCeE---EEeccC--CcceEEEEEccCCCeEEEEeCCCcEEEEECC-CCeEeeeeeEEecccccCCCCCeE
Q 004410 451 GKVRIWEVRRCQV---VDYTDI--REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 451 g~V~iwdl~~~~~---~~~~~~--~~~V~~v~~spdg~~la~gs~dg~I~iwD~~-~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
+.|.+||+.++.. ..+..+ ...+..++++ ++.++++...++..+||.+. ++....... ......+.
T Consensus 295 ~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-------~~~~~~v~ 366 (695)
T 2bkl_A 295 QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ-------LPGVGAAS 366 (695)
T ss_dssp CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC-------CSSSSEEC
T ss_pred CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec-------CCCCeEEE
Confidence 7899999987642 333333 4467888888 67788888889987777554 233222111 01134567
Q ss_pred EEEEcCCCCCEEEE-EEC---CCcEEEEECCcce
Q 004410 525 GFQFSPSDPSKVIV-TSA---DSLVRVLCGENVV 554 (755)
Q Consensus 525 ~v~fsp~d~~~l~s-~s~---Dg~I~iwd~~~~~ 554 (755)
.+.++| ++..++. .+. .+.|++||..+..
T Consensus 367 ~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 367 NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 788888 5655553 332 4689999987644
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.38 E-value=1.8e-10 Score=123.56 Aligned_cols=286 Identities=12% Similarity=0.056 Sum_probs=185.2
Q ss_pred eeecCCCCeeEEeeC-----CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CC
Q 004410 241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------ED 305 (755)
Q Consensus 241 ~~~spdg~~lasgs~-----dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~D 305 (755)
....|+++.++.... ++.|.+.|..+... ..++..-..+ . ++++|||++|+++. .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-------EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence 556799998887755 67999999765432 2233333334 3 99999999887775 36
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.|.+||..+.+.+..+....... .
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r-------------------------------------------------------~ 133 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPR-------------------------------------------------------F 133 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCC-------------------------------------------------------C
T ss_pred CEEEEEECCCCeEEEEEECCCccc-------------------------------------------------------c
Confidence 789999999988766554321000 0
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-C
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSA--DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-C 461 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~--Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~ 461 (755)
........++++||| +|+.+.. ++.|.++|+.+++.+..+.-.+. ..+.|...+.|++.+.||++.+.++.. +
T Consensus 134 ~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g 210 (386)
T 3sjl_D 134 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEG 210 (386)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCC
Confidence 001123358899999 6666653 68999999999999998864442 223354667888999999999999976 5
Q ss_pred eEEEec-cC----Ccce-EEEEEc-cCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc----ccCCCCCeEEEEEcC
Q 004410 462 QVVDYT-DI----REIV-SAVCYC-PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK----KKLPGKRITGFQFSP 530 (755)
Q Consensus 462 ~~~~~~-~~----~~~V-~~v~~s-pdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~----~~~~~~~I~~v~fsp 530 (755)
++.... .. ...+ ....|. ++|++++ .+.+|.|+++|+.+........+.+... .......+..++++|
T Consensus 211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~ 289 (386)
T 3sjl_D 211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 289 (386)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred eEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence 543211 11 1122 124554 6776555 5668999999998765332222211000 000112233467788
Q ss_pred CCCCEEEEEEC----------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEE-eCCCcEEEEEcCCCC
Q 004410 531 SDPSKVIVTSA----------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSP-SEDSNIYIWNYSNQD 598 (755)
Q Consensus 531 ~d~~~l~s~s~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sg-s~Dg~I~iWd~~~~~ 598 (755)
+++.+++... .+.|.++|..+......... ...+..++|++|++ +|+++ ..++.|.++|..+++
T Consensus 290 -~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 290 -ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp -TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred -CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 6666666532 25799999988665554432 23678999999997 66665 458999999999887
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.38 E-value=8.4e-10 Score=114.34 Aligned_cols=235 Identities=7% Similarity=0.012 Sum_probs=167.9
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
+...+.+|+++++|+++++...++.|.+|+.. +... .+.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~--------------------------------------- 51 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYP--------------------------------------- 51 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEE---------------------------------------
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-Eec---------------------------------------
Confidence 45679999999999988877778899999876 4311 110
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEee
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNP 438 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp 438 (755)
+..+...+.++++.+++ .+++...++.|..||.. ++. ..+. ....+.++++.|
T Consensus 52 ---------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~ 108 (299)
T 2z2n_A 52 ---------------------LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP 108 (299)
T ss_dssp ---------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT
T ss_pred ---------------------CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC
Confidence 01133568889999998 44444457889999986 333 2332 456799999998
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEe--ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~~~--~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
+++++++...++.|.+||. +++.... ......+..+++.++|...++...++.|..||. +++.... ..
T Consensus 109 -~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~---~~---- 178 (299)
T 2z2n_A 109 -NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEF---KI---- 178 (299)
T ss_dssp -TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE---EC----
T ss_pred -CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe---eC----
Confidence 8888888777899999999 5555433 223456899999999987777667789999999 6654321 11
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
......+.++++.+ ++.++++...++.|.+|+. +..... .........+..++++++|+++++...++.|.+||.
T Consensus 179 ~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 179 PTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 12345688999999 6776666667889999998 432221 111234467889999999997777767899999998
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.37 E-value=1.4e-10 Score=120.15 Aligned_cols=218 Identities=10% Similarity=0.051 Sum_probs=154.8
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc-ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
.+++|++++.++.|.+||..++.... ++..|. ..+.++.++|+|++|++ .++.|..||. +++.+..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w-------~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVW-------EYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEE-------EEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEE-------EeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcC
Confidence 46788999999999999976554322 233343 46788999999999983 4678999998 6765544321
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~ 403 (755)
++...+.++.+.++| .++
T Consensus 74 -------------------------------------------------------------~~~~~~~~~~~~~dG~~lv 92 (276)
T 3no2_A 74 -------------------------------------------------------------PAGCEMQTARILPDGNALV 92 (276)
T ss_dssp -------------------------------------------------------------CTTCEEEEEEECTTSCEEE
T ss_pred -------------------------------------------------------------CCCccccccEECCCCCEEE
Confidence 112346778899999 667
Q ss_pred EEeC-CCcEEEEeCCCCeEEEEEecC-------CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEE
Q 004410 404 SSSA-DKTVRLWQVGIDRCLRVFSHN-------NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475 (755)
Q Consensus 404 s~s~-Dg~V~iWdl~s~~~~~~~~h~-------~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~ 475 (755)
+.+. ++.|..+|. .++.+..+... .....+.+.+ +++++++...++.|..||.. ++.+........+.+
T Consensus 93 ~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~ 169 (276)
T 3no2_A 93 AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFS 169 (276)
T ss_dssp EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCE
T ss_pred EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccc
Confidence 6666 777888886 67777666411 2344567788 99999999999999999998 777744444456777
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
+...++|+.++++..++.|..+|..+++.+.+... ..........+..++..+ ++..+++..
T Consensus 170 ~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~--~~~~~~~l~~~~~~~~~~-~G~i~v~~~ 231 (276)
T 3no2_A 170 SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA--NDIEGVQLFFVAQLFPLQ-NGGLYICNW 231 (276)
T ss_dssp EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG--GGSBSCCCSEEEEEEECT-TSCEEEEEE
T ss_pred eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC--CCCCCccccccccceEcC-CCCEEEEec
Confidence 88899999999988888999999998988765431 000011223467788887 666666543
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.31 E-value=5.9e-10 Score=116.74 Aligned_cols=242 Identities=8% Similarity=0.081 Sum_probs=158.5
Q ss_pred cCcceeecCCCCeeEE-------eeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCCcE
Q 004410 237 RHGSATLKPGDHELTL-------GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTV 308 (755)
Q Consensus 237 ~~~~~~~spdg~~las-------gs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I 308 (755)
...+++|+++|.++++ +..++.|.+|+....... .+.. ....++...+.+++++++ |+++++... +.|
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~~-~~l 94 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT--VICK-PEVNGYGGIPAGCQCDRDANQLFVADMR-LGL 94 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE--EEEC-CEETTEECCEEEEEECSSSSEEEEEETT-TEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE--EEEe-cccCCCCCCCceEEEecCCCcEEEEECC-CCE
Confidence 3456899999988887 677899999986544321 1100 011235577999999999 776665543 468
Q ss_pred EEEEccCCeeeee-eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 309 RVWKVIEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 309 ~vWdv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
.+|+.. ++.... .... ...+
T Consensus 95 ~~~d~~-g~~~~~~~~~~----------------------------------------------------------~~~~ 115 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDS----------------------------------------------------------EGRR 115 (314)
T ss_dssp EEEETT-SCEEECCSBCT----------------------------------------------------------TSCB
T ss_pred EEEeCC-CCEEEEEeccC----------------------------------------------------------CCcc
Confidence 889876 542211 0000 0001
Q ss_pred CCCEEEEEEcCCC-eEEEEeCC---------------CcEEEEeCCCCeEEEEEecCCcEEEEEEe----eCCCCEE-EE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSAD---------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFN----PVDDNYF-IS 446 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~D---------------g~V~iWdl~s~~~~~~~~h~~~V~~i~fs----p~d~~~l-~s 446 (755)
...+.++++.+++ .+++...+ +.|..||.. ++......+......++++ | +++.+ ++
T Consensus 116 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~-dg~~l~v~ 193 (314)
T 1pjx_A 116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDG-RPYQLIVA 193 (314)
T ss_dssp CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTS-CEEEEEEE
T ss_pred ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCC-CCCEEEEE
Confidence 2346788999988 44444333 567778776 6655555555667899999 8 77655 44
Q ss_pred EeCCCcEEEEEcC-CCeEE------EeccCC-cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 447 GSIDGKVRIWEVR-RCQVV------DYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 447 gs~Dg~V~iwdl~-~~~~~------~~~~~~-~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
...++.|.+||+. +++.. ....+. ..+..++++++|+++++...++.|.+||..+++..... ..
T Consensus 194 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~--------~~ 265 (314)
T 1pjx_A 194 ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI--------RC 265 (314)
T ss_dssp ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE--------EC
T ss_pred ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE--------eC
Confidence 4568899999986 44421 222222 56889999999988887778899999999866554322 12
Q ss_pred CCCCeEEEEEcCCCCCEEEE-EECCCcEEEEECCc
Q 004410 519 PGKRITGFQFSPSDPSKVIV-TSADSLVRVLCGEN 552 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s-~s~Dg~I~iwd~~~ 552 (755)
+...+.+++|+| ++..|++ ...++.|..|+...
T Consensus 266 ~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 266 PFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 336789999998 7775554 45568898888654
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.30 E-value=8.3e-10 Score=120.49 Aligned_cols=283 Identities=11% Similarity=0.045 Sum_probs=184.4
Q ss_pred CCCCeeEEeeC-C----CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CCCcEE
Q 004410 245 PGDHELTLGQR-M----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVR 309 (755)
Q Consensus 245 pdg~~lasgs~-d----g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~Dg~I~ 309 (755)
|+++.+++... + +.|.+.|..+... + .++..-..+ .++++|||++|+.+. .++.|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v-v------~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs 152 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI-L------GMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE 152 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEE-E------EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEE-E------EEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence 56665555443 2 6999999765432 2 223322334 799999999888875 367899
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
++|..+++.+..+....... + ....
T Consensus 153 viD~~t~~vv~~I~v~g~~r------------------------------------------------------~-~~g~ 177 (426)
T 3c75_H 153 VFDPVTFLPIADIELPDAPR------------------------------------------------------F-LVGT 177 (426)
T ss_dssp EECTTTCCEEEEEEETTCCC------------------------------------------------------C-CBSC
T ss_pred EEECCCCcEEEEEECCCccc------------------------------------------------------c-ccCC
Confidence 99999988766654321000 0 0011
Q ss_pred CEEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 390 EVLDLSWSKNG-FLLSSSA--DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~--Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
....+.++|++ +|+.+.. ++.|.+.|+.+++.+..+.-... ....|.....+++.+.||++.+.++.++++...
T Consensus 178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 12357899999 7777664 57899999999999988864432 344453457778888899999889866655421
Q ss_pred ----ccC-Ccc-eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc-C---CCCCeEEEEEcCCCCCEE
Q 004410 467 ----TDI-REI-VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK-L---PGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 467 ----~~~-~~~-V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~-~---~~~~I~~v~fsp~d~~~l 536 (755)
... ... ...+.|.+++..++..+..+.+.+.|+.+........+.+..... . .......++++| ++..+
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rl 333 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRI 333 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEE
Confidence 111 111 124578999999888888999999999766543222111110000 0 001122368899 66666
Q ss_pred EEEEC----------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCC
Q 004410 537 IVTSA----------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 537 ~s~s~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
++... .+.|.++|..+.......... .....+.|+|||+ +++++. .++.|.++|+.+.+
T Consensus 334 yVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 334 YLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 55532 357999999886555444222 2477899999999 888888 59999999999887
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.26 E-value=1.2e-08 Score=105.51 Aligned_cols=236 Identities=7% Similarity=0.006 Sum_probs=166.6
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
....+.+|+++++|+++++...++.|.+|+.. ++.. .+.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~--------------------------------------- 56 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFE--------------------------------------- 56 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE---------------------------------------
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEE---------------------------------------
Confidence 34578899999999988888778899999876 4321 010
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-e-cCCcEEEEEEeeC
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S-HNNYVTSVAFNPV 439 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~-h~~~V~~i~fsp~ 439 (755)
+..+...+..+++.+++ .+++...++.|..||.. ++..... . ....+.++++.+
T Consensus 57 ---------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~- 113 (300)
T 2qc5_A 57 ---------------------VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL- 113 (300)
T ss_dssp ---------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-
T ss_pred ---------------------CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-
Confidence 11223567889999988 44444457889999988 5553222 1 346799999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEe--ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~~~~--~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
+++++++...++.|..+|.. ++...+ ......+..+++.++|+..++...++.|..||. +++... ... .
T Consensus 114 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~----~ 184 (300)
T 2qc5_A 114 NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPL----P 184 (300)
T ss_dssp TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EEC----S
T ss_pred CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeC----C
Confidence 88888887778899999988 655533 223457899999999996666556788999998 554432 111 1
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.....+.++++.+ ++.++++....+.|.+|+.......+.. ......+.+++++++|+++++...++.|..|+.
T Consensus 185 ~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 185 TNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDI--PTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp STTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEEC--SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEEC--CCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 2345688999998 7777666666778999997332222211 234466889999999997777767789999987
No 205
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.24 E-value=1.9e-09 Score=113.13 Aligned_cols=233 Identities=9% Similarity=0.052 Sum_probs=152.9
Q ss_pred ecccccEEEEEEecCCC-EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~-~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
..+........|+|+|+ ++++...++.|..|+. +++.
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~----------------------------------------- 78 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV----------------------------------------- 78 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-----------------------------------------
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-----------------------------------------
Confidence 33445667899999998 6777778889999986 3321
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEe-CCCcEEEEeCCCCeEEEEEe-----cCCcEEE
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS-ADKTVRLWQVGIDRCLRVFS-----HNNYVTS 433 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s-~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~ 433 (755)
..+..+...+..+++.++|.|+++. .++.|.+|+.. ++...... ....+..
T Consensus 79 ----------------------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~ 135 (305)
T 3dr2_A 79 ----------------------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPND 135 (305)
T ss_dssp ----------------------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCC
T ss_pred ----------------------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCC
Confidence 1112234567889999999555555 45789999986 55433322 1245678
Q ss_pred EEEeeCCCCEEEE----EeC-------------CCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC-----
Q 004410 434 VAFNPVDDNYFIS----GSI-------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT----- 491 (755)
Q Consensus 434 i~fsp~d~~~l~s----gs~-------------Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d----- 491 (755)
+++.| +++++++ |.. .+.|..||..+++...+. .......++|+||++.|+++...
T Consensus 136 i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~ 213 (305)
T 3dr2_A 136 LIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHG 213 (305)
T ss_dssp EEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---C
T ss_pred EEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCC
Confidence 99999 8998886 332 256888888777655444 44567889999999988887765
Q ss_pred -CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEE
Q 004410 492 -GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMF 570 (755)
Q Consensus 492 -g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~ 570 (755)
+.|.+|++..+.+ ........ .......++++.+ +++ |.++..+ .|.+|+..... .... . ....+..
T Consensus 214 ~~~i~~~~~~~~~l-~~~~~~~~----~~~~~pdgi~~d~-~G~-lwv~~~~-gv~~~~~~g~~-~~~~--~-~~~~~~~ 281 (305)
T 3dr2_A 214 SVEITAFAWRDGAL-HDRRHFAS----VPDGLPDGFCVDR-GGW-LWSSSGT-GVCVFDSDGQL-LGHI--P-TPGTASN 281 (305)
T ss_dssp CCEEEEEEEETTEE-EEEEEEEC----CSSSCCCSEEECT-TSC-EEECCSS-EEEEECTTSCE-EEEE--E-CSSCCCE
T ss_pred CCEEEEEEecCCCc-cCCeEEEE----CCCCCCCeEEECC-CCC-EEEecCC-cEEEECCCCCE-EEEE--E-CCCceeE
Confidence 6899999987652 21111111 1223456788888 666 4444444 49999874322 2121 1 2235888
Q ss_pred EEEecCCCEEEEEeCCCcEEEEE
Q 004410 571 ATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 571 l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
++|+++++.|+.++.+ .|+.++
T Consensus 282 ~~f~~d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 282 CTFDQAQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp EEECTTSCEEEEEETT-EEEEEE
T ss_pred EEEeCCCCEEEEEcCC-eEEEEE
Confidence 9999999988888876 444444
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.22 E-value=2.6e-09 Score=117.01 Aligned_cols=244 Identities=10% Similarity=-0.020 Sum_probs=161.6
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
.....|+|+++|+++++...++.|++||..++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~------------------------------------------ 168 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH------------------------------------------ 168 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee------------------------------------------
Confidence 35789999999998888888899999998776532111
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCeEEEEE----e-cCCcEEEEEE
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVF----S-HNNYVTSVAF 436 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg--~V~iWdl~s~~~~~~~----~-h~~~V~~i~f 436 (755)
. ...... ++|++++ .|+++..++ .|.+|+...+.....+ . ....+.++++
T Consensus 169 --------------------~-~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav 226 (409)
T 3hrp_A 169 --------------------P-GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVAL 226 (409)
T ss_dssp --------------------E-TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEE
T ss_pred --------------------c-cCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEE
Confidence 0 011123 8899998 777777765 7999998766554444 3 4567889999
Q ss_pred eeCCCCEEEEEeCCCcEEEEEcCCCeEEEe----c-cCCcce-E-EEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeee
Q 004410 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDY----T-DIREIV-S-AVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~----~-~~~~~V-~-~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~ 508 (755)
+| ++..|+.+..++.|+.||..++....+ . ...... . .++|+|+ +.++++-..++.|+.|+.........-
T Consensus 227 ~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g 305 (409)
T 3hrp_A 227 DE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCG 305 (409)
T ss_dssp CT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEE
T ss_pred eC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEe
Confidence 99 555555577788999999987765433 1 111112 2 8999995 555555566788999998754221100
Q ss_pred eEEeccc-----ccCCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEECCcceee-EEEee--e---------ccCCceEE
Q 004410 509 QICLQGK-----KKLPGKRITGFQFSPSDPSKVIVTS-ADSLVRVLCGENVVGK-FKASA--F---------RVAGSQMF 570 (755)
Q Consensus 509 ~~~~~~~-----~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~~~~~~~-~~~~~--~---------~~~~~v~~ 570 (755)
.....+. .........+++++| ++.++++-. .++.|+.|+..+.... +.... . ..-.....
T Consensus 306 ~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~g 384 (409)
T 3hrp_A 306 SATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYD 384 (409)
T ss_dssp CTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEE
T ss_pred CCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceE
Confidence 0000000 001124578999999 777777777 8899999996544322 22110 0 00245789
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEc
Q 004410 571 ATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 571 l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
++++++|.++++-..++.|+.+++
T Consensus 385 iavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 385 ICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEcCCCCEEEEECCCCeEEEEEe
Confidence 999999988888888889988875
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.22 E-value=1.6e-08 Score=105.57 Aligned_cols=230 Identities=10% Similarity=0.040 Sum_probs=151.2
Q ss_pred cccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 284 EGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 284 ~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
..-..+..|+|+ +.++++...++.|..||..++... .
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~----------------------------------------- 49 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-R----------------------------------------- 49 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-E-----------------------------------------
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-E-----------------------------------------
Confidence 344567889995 556777777899999998765421 0
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEec-----CCcEEEEEEe
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH-----NNYVTSVAFN 437 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h-----~~~V~~i~fs 437 (755)
..+...+.++++++++.|+.+. ++.|.+||..+++....... ...+..++++
T Consensus 50 ----------------------~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d 106 (297)
T 3g4e_A 50 ----------------------VTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVD 106 (297)
T ss_dssp ----------------------EECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEEC
T ss_pred ----------------------EeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEEC
Confidence 0123468889999999555555 57899999998876544432 2458899999
Q ss_pred eCCCCEEEEEeCC---------CcEEEEEcC-CCeEEEeccCCcceEEEEEccCCCeEEE-EeCCCcEEEEEC--CCCeE
Q 004410 438 PVDDNYFISGSID---------GKVRIWEVR-RCQVVDYTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDI--KDNQL 504 (755)
Q Consensus 438 p~d~~~l~sgs~D---------g~V~iwdl~-~~~~~~~~~~~~~V~~v~~spdg~~la~-gs~dg~I~iwD~--~~~~~ 504 (755)
| +++++++.... ..-.||.+. .++.............++|+||++.|++ .+.++.|.+||+ .++.+
T Consensus 107 ~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 107 P-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp T-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred C-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 9 88877755322 223445443 2344333334455789999999997755 455788999987 45554
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe-cCCCEEEEE
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT-SDGKHVVSP 583 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs-pdg~~L~sg 583 (755)
.....+ .. .........++++.+ ++++.++....+.|.+||..+....... ..+...+++++|. |+++.|+.+
T Consensus 186 ~~~~~~-~~--~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i--~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 186 SNRRSV-YK--LEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTV--KLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp EEEEEE-EE--CCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEE--ECSSSBEEEEEEESGGGCEEEEE
T ss_pred cCcEEE-EE--CCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEE--ECCCCCceEEEEeCCCCCEEEEE
Confidence 211111 00 111224678899999 7787777778889999998754433332 2344678999998 898877665
Q ss_pred eC
Q 004410 584 SE 585 (755)
Q Consensus 584 s~ 585 (755)
+.
T Consensus 260 ~~ 261 (297)
T 3g4e_A 260 CA 261 (297)
T ss_dssp EB
T ss_pred cC
Confidence 54
No 208
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.21 E-value=5e-10 Score=120.59 Aligned_cols=176 Identities=9% Similarity=0.029 Sum_probs=130.1
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCccccc----ccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~----~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
.+..+++++...++++|+.++ ++||+.....+... .+.. .....+.+ |+.|+| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 466799999999999999884 66698653221000 0111 12335667 999999 99999999 889999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+.+..... ....|...|.
T Consensus 113 v~sl~~~~--------------------------------------------------------------~~~~~~~~v~ 130 (388)
T 1xip_A 113 LEELSEFR--------------------------------------------------------------TVTSFEKPVF 130 (388)
T ss_dssp SSSTTCEE--------------------------------------------------------------EEEECSSCEE
T ss_pred chhhhccC--------------------------------------------------------------ccceeeccee
Confidence 87654211 1122444566
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE--E-Ee---
Q 004410 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--V-DY--- 466 (755)
Q Consensus 393 ~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~--~-~~--- 466 (755)
++.+.+. .+++++.||.|.+||+..++... +...|+|++|+| ++ ++.|..||++++|+....++ . .+
T Consensus 131 ~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P 203 (388)
T 1xip_A 131 QLKNVNN-TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP 203 (388)
T ss_dssp EEEECSS-EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred eEEecCC-CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCC
Confidence 6666654 38889999999999999887754 456899999999 77 78899999999999988774 3 22
Q ss_pred ---c---cCCcceEEEEEccCCCeEEE
Q 004410 467 ---T---DIREIVSAVCYCPDGKGGIV 487 (755)
Q Consensus 467 ---~---~~~~~V~~v~~spdg~~la~ 487 (755)
. ++...|.+|+|.+++.++++
T Consensus 204 p~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 204 SELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp HHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cccccccCCCeeEEEEEEecCCeEEEE
Confidence 2 36788999999999888876
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.19 E-value=2.3e-08 Score=105.95 Aligned_cols=187 Identities=12% Similarity=0.041 Sum_probs=121.9
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEec-----CCcEEEEEEeeCCCCEEEEEeC------CCcEEEEE
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH-----NNYVTSVAFNPVDDNYFISGSI------DGKVRIWE 457 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h-----~~~V~~i~fsp~d~~~l~sgs~------Dg~V~iwd 457 (755)
..+.+++|.+++.++.++.+ .|.+||..+++....... ...+.+++++| +++++++... .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe
Confidence 45888999999955555544 499999988876544332 23689999999 8887766542 24566666
Q ss_pred cCCCeEEEeccCCcceEEEEEccCCCeEEEE-eCCCcEEEEECC--CC-eEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIK--DN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 458 l~~~~~~~~~~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~--~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
+++...+.........++|+|||+.|+++ +.++.|.+||+. ++ .+.....+. . .........++++.+ ++
T Consensus 168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~-~--~~~~~~~p~gi~~d~-~G 241 (326)
T 2ghs_A 168 --KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-D--STGIKGGMDGSVCDA-EG 241 (326)
T ss_dssp --TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-E--CTTSSSEEEEEEECT-TS
T ss_pred --CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE-E--CCCCCCCCCeeEECC-CC
Confidence 56555443333457889999999987665 456889999986 55 321110010 0 111234567899998 77
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe-cCCCEEEEEeCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT-SDGKHVVSPSED 586 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs-pdg~~L~sgs~D 586 (755)
.+.++...++.|.+|+... ...... ......+++++|+ ++++.|+.++..
T Consensus 242 ~lwva~~~~~~v~~~d~~g-~~~~~i--~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDTDG-NHIARY--EVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CEEEEEETTTEEEEECTTC-CEEEEE--ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CEEEEEeCCCEEEEECCCC-CEEEEE--ECCCCCcEEEEEecCCCCEEEEEecC
Confidence 7777776778999999743 222222 2334568999998 888877655443
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=2.5e-10 Score=122.88 Aligned_cols=189 Identities=10% Similarity=0.021 Sum_probs=132.6
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
.+..+++++...+|++|+.++ ++||++.+...... .....
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~~------------------------------------- 78 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT--SDSTP------------------------------------- 78 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSCC-------------------------------------
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--ccccc-------------------------------------
Confidence 588999999999999999885 66699765431000 00000
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCE
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~ 443 (755)
-.+... ..+.. |+.|+| ++ .|+++ .++.|++||+.+....... .|...|.++.+.+ . .
T Consensus 79 ------------~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~ 138 (388)
T 1xip_A 79 ------------LTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--T 138 (388)
T ss_dssp ------------CCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--E
T ss_pred ------------ccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--C
Confidence 001111 23556 999999 66 77777 8899999998766544433 4777788887765 2 3
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc---CCC
Q 004410 444 FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK---LPG 520 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~---~~~ 520 (755)
+++++.||.|.+||+.++.... +...|++++|+|+| +++|..||++++|+..+........+....... .+.
T Consensus 139 ~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~ 213 (388)
T 1xip_A 139 LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE 213 (388)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT
T ss_pred EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC
Confidence 8889999999999999887754 45689999999999 788999999999999887752111111111111 256
Q ss_pred CCeEEEEEcCCCCCEEEEEE
Q 004410 521 KRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s 540 (755)
..|.+++|.+ +..++++-.
T Consensus 214 ~~V~sI~wl~-~~~flv~y~ 232 (388)
T 1xip_A 214 YSPLSVTILS-PQDFLAVFG 232 (388)
T ss_dssp SEEEEEEESS-SSEEEEEEE
T ss_pred eeEEEEEEec-CCeEEEEEc
Confidence 8899999999 777776643
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.18 E-value=2e-09 Score=127.51 Aligned_cols=240 Identities=11% Similarity=0.005 Sum_probs=149.5
Q ss_pred CcceeecCCCCeeEEeeCC-----CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc-----
Q 004410 238 HGSATLKPGDHELTLGQRM-----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT----- 307 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~d-----g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~----- 307 (755)
+..++|||||++||.+..+ ..|+|||+.++... . ...+...+..++|+|| +.|+.++.|+.
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~-~-------~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL-A-------DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-E-------EEEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-C-------ccCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 4558999999999887553 46999998765431 1 1112222357899999 99998887654
Q ss_pred ---------EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 308 ---------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 308 ---------I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
|++|++.++....
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~---------------------------------------------------------- 257 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSAD---------------------------------------------------------- 257 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGC----------------------------------------------------------
T ss_pred cccCCCCCEEEEEECCCCchhC----------------------------------------------------------
Confidence 5666654432100
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCC--e-EEEEEecCCcEEEEEEeeCCCCEEEEEeC
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK-----TVRLWQVGID--R-CLRVFSHNNYVTSVAFNPVDDNYFISGSI 449 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg-----~V~iWdl~s~--~-~~~~~~h~~~V~~i~fsp~d~~~l~sgs~ 449 (755)
..+.....|...+..+.|+||| +|+..+.++ .|++||+.++ + ......+...+.... .| +++.|+..+.
T Consensus 258 ~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~ 335 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSG 335 (741)
T ss_dssp EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE-ETTEEEEEEC
T ss_pred EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec-cCCEEEEEEC
Confidence 0011112334457889999999 777666443 8999999877 4 334444555555553 47 7787777765
Q ss_pred C----CcEEEEEcCCC--eEEEec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECC-CCeEeeeeeEEecccccCCCC
Q 004410 450 D----GKVRIWEVRRC--QVVDYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 450 D----g~V~iwdl~~~--~~~~~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~-~~~~~~~~~~~~~~~~~~~~~ 521 (755)
+ +.|.+||+.++ ....+. .+...+..+++. ++.++++...++..+||.+. ++.....+. .....
T Consensus 336 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-------~~~~~ 407 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS-------LPGIG 407 (741)
T ss_dssp TTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB-------CSSSC
T ss_pred CCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc-------CCCCe
Confidence 3 45999999874 344333 334456677777 56677888888887766543 233222111 11245
Q ss_pred CeEEEEEcCCCCCEEEEEEC---CCcEEEEECCcce
Q 004410 522 RITGFQFSPSDPSKVIVTSA---DSLVRVLCGENVV 554 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s~---Dg~I~iwd~~~~~ 554 (755)
.+..+.++|++..++++.+. .+.|++||..+..
T Consensus 408 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 408 SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 68889999943334444432 4789999987644
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.16 E-value=7.3e-10 Score=130.19 Aligned_cols=240 Identities=14% Similarity=0.118 Sum_probs=153.5
Q ss_pred cccccEEEEEEecCCCEEEEE-----cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 282 AHEGSILTMKFSLDGQYLASG-----GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSg-----s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
+|...|..++|||||++||-+ +....|+|||+.+++.+...
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~---------------------------------- 171 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP---------------------------------- 171 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE----------------------------------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc----------------------------------
Confidence 456678999999999999843 33457999999988643210
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCC-------------cEEEEeCCCCeE-
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK-------------TVRLWQVGIDRC- 421 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg-------------~V~iWdl~s~~~- 421 (755)
+.+. ....++|+ |+ .|+.++.+. .|++|++.+.+.
T Consensus 172 ---------------------------~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~ 221 (693)
T 3iuj_A 172 ---------------------------LKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED 221 (693)
T ss_dssp ---------------------------EEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG
T ss_pred ---------------------------cCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc
Confidence 0000 01246788 88 777777664 399999987653
Q ss_pred -EEEEe----cCCcEEEEEEeeCCCCEEEEEeC----CCcEEEEEcCCC--eEEEeccCCcceEEEEEccCCCeEEEEeC
Q 004410 422 -LRVFS----HNNYVTSVAFNPVDDNYFISGSI----DGKVRIWEVRRC--QVVDYTDIREIVSAVCYCPDGKGGIVGTM 490 (755)
Q Consensus 422 -~~~~~----h~~~V~~i~fsp~d~~~l~sgs~----Dg~V~iwdl~~~--~~~~~~~~~~~V~~v~~spdg~~la~gs~ 490 (755)
...+. +...+..+.|+| ++++|+.... +..|+++|+.++ +...+..+....... ++++|..|+..+.
T Consensus 222 ~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~ 299 (693)
T 3iuj_A 222 DRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTN 299 (693)
T ss_dssp CEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEEC
T ss_pred ceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEEC
Confidence 33332 244678999999 8887755432 258999999776 455555555555555 6777777766554
Q ss_pred C----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-CC--cEEEEECCcceeeEEEeeec
Q 004410 491 T----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-DS--LVRVLCGENVVGKFKASAFR 563 (755)
Q Consensus 491 d----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg--~I~iwd~~~~~~~~~~~~~~ 563 (755)
. +.|..+|+.++.... ... +. .+...+. .|++ ++..|+.... ++ .|++|+....... .....
T Consensus 300 ~~~~~~~l~~~d~~~~~~~~-~~~-l~----~~~~~~~--~~s~-~g~~lv~~~~~~g~~~l~~~d~~g~~~~--~l~~p 368 (693)
T 3iuj_A 300 RDAPNRRLVTVDAANPGPAH-WRD-LI----PERQQVL--TVHS-GSGYLFAEYMVDATARVEQFDYEGKRVR--EVALP 368 (693)
T ss_dssp TTCTTCEEEEEETTSCCGGG-CEE-EE----CCCSSCE--EEEE-ETTEEEEEEEETTEEEEEEECTTSCEEE--EECCS
T ss_pred CCCCCCEEEEEeCCCCCccc-cEE-Ee----cCCCCEE--EEEE-ECCEEEEEEEECCeeEEEEEECCCCeeE--EeecC
Confidence 2 579999998764310 000 11 1222333 7888 5566655544 44 6788887643222 21133
Q ss_pred cCCceEEEEEecCCCEEEEEeCC----CcEEEEEcCCCC
Q 004410 564 VAGSQMFATFTSDGKHVVSPSED----SNIYIWNYSNQD 598 (755)
Q Consensus 564 ~~~~v~~l~fspdg~~L~sgs~D----g~I~iWd~~~~~ 598 (755)
..+.+..+.++++++.|+....+ +.|+.||+.+++
T Consensus 369 ~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 369 GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 45567778888888877665544 789999998776
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.16 E-value=2.7e-08 Score=107.52 Aligned_cols=236 Identities=10% Similarity=-0.039 Sum_probs=151.4
Q ss_pred ceeecCCCCeeEEee----------CCCeEEEEECCCCcccccccccc--eeeecccccEEEEEEecCCCEEEEEcC--C
Q 004410 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--D 305 (755)
Q Consensus 240 ~~~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~--~~l~~H~~~V~~l~fspdg~~LaSgs~--D 305 (755)
.++++|||++|+.+. .++.|.+||..+... ....... .... +...-..++|+|||++|+.+.. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-~~~i~~~~~~~~~-~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFD-VGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE-EEEEECCCccccc-cCCCccceEECCCCCEEEEEecCCC
Confidence 589999999988875 367899999764321 1111110 0000 0123457899999999998874 4
Q ss_pred CcEEEEEccCCeeeee-eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 306 GTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
+.|.++| .+++.+.. +...
T Consensus 148 ~~v~viD-~t~~~~~~~i~~~----------------------------------------------------------- 167 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSSP----------------------------------------------------------- 167 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCCC-----------------------------------------------------------
Confidence 7899999 88865433 2210
Q ss_pred cCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe------cCCc-EEEEEEeeCCCCEEEEEeCCCcEEE
Q 004410 385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS------HNNY-VTSVAFNPVDDNYFISGSIDGKVRI 455 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~------h~~~-V~~i~fsp~d~~~l~sgs~Dg~V~i 455 (755)
. ++.+.+++ .+++.+.||.+.++|. +++...... .... .....+.+ ++..++..+..+.|.+
T Consensus 168 ----~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~v~v 238 (373)
T 2mad_H 168 ----T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYSGKILQ 238 (373)
T ss_pred ----c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe-cCCEEEEEcCCceEEE
Confidence 0 12233443 5566677888889998 776663321 1111 23345677 4444444447889999
Q ss_pred EEcCCCeE--EE-ecc----------CCcceEEEEEccCCCeEEEEeC----------CCcEEEEECCCCeEeeeeeEEe
Q 004410 456 WEVRRCQV--VD-YTD----------IREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 456 wdl~~~~~--~~-~~~----------~~~~V~~v~~spdg~~la~gs~----------dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
.|+..... +. +.. .......+.++|+++.++++.. .+.|.++|+.+++.+..+..
T Consensus 239 id~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-- 316 (373)
T 2mad_H 239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-- 316 (373)
T ss_pred EeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--
Confidence 99976532 21 110 1122445789999998888654 35799999999988765432
Q ss_pred cccccCCCCCeEEEEEcCCCCC-EEEEEE-CCCcEEEEECCcceee
Q 004410 513 QGKKKLPGKRITGFQFSPSDPS-KVIVTS-ADSLVRVLCGENVVGK 556 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~-~l~s~s-~Dg~I~iwd~~~~~~~ 556 (755)
.....+++|+| |++ +++++. .++.|.++|..+....
T Consensus 317 -------g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 317 -------GHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred -------CCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 23578999999 676 777776 5899999998875544
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.15 E-value=6.6e-09 Score=113.81 Aligned_cols=244 Identities=14% Similarity=0.032 Sum_probs=158.4
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC--cEEEEEcc
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVI 314 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg--~I~vWdv~ 314 (755)
....++++|+++++++...++.|++|+...... ..+ ... ..... ++|+|++++|+++..++ .|.+|+..
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~--~~~-----~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV--TTV-----HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEE--EEE-----EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEE--EEe-----ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence 344589999999888888889999999765332 111 111 12223 89999999999988866 67777765
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC-CCCCEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLD 393 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~ 393 (755)
.+.....+ ..+.. +...+.+
T Consensus 203 ~~~~~~~~-----------------------------------------------------------g~~~~~~~~~p~~ 223 (409)
T 3hrp_A 203 SGWAPTRI-----------------------------------------------------------GQLGSTFSGKIGA 223 (409)
T ss_dssp GTTCEEEE-----------------------------------------------------------EECCTTSCSCCCB
T ss_pred CCceeEEe-----------------------------------------------------------eeccchhcCCcEE
Confidence 44221110 00001 2344567
Q ss_pred EEEcC-CCeEEEEeCCCcEEEEeCCCCeEEEE----Ee-cCCcE-E-EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 394 LSWSK-NGFLLSSSADKTVRLWQVGIDRCLRV----FS-HNNYV-T-SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 394 l~~s~-~~~L~s~s~Dg~V~iWdl~s~~~~~~----~~-h~~~V-~-~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
++++| ++.|+.+..++.|+.||..++..... .. +...- . .++|+|.++.++++-..++.|+.|+.... ...
T Consensus 224 iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~ 302 (409)
T 3hrp_A 224 VALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEW 302 (409)
T ss_dssp CEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEE
T ss_pred EEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEE
Confidence 89999 56666677788999999987764333 11 11222 2 99999945666777777889999998754 333
Q ss_pred eccC---------------CcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEeeeeeE-Eeccc-----ccCCCCCe
Q 004410 466 YTDI---------------REIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQI-CLQGK-----KKLPGKRI 523 (755)
Q Consensus 466 ~~~~---------------~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~-~~~~~-----~~~~~~~I 523 (755)
+.+. -.....++++|+|+++++-. .++.|+.||+.++.+....-. ...+. ........
T Consensus 303 ~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P 382 (409)
T 3hrp_A 303 FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYP 382 (409)
T ss_dssp EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSE
T ss_pred EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCc
Confidence 2222 13478999999999777766 788999999887765321110 00000 00112468
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 524 TGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
.++++.| ++.++++-..++.|+.+++
T Consensus 383 ~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 383 YDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred eEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 8999999 6777777777888887753
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.14 E-value=1.9e-08 Score=104.89 Aligned_cols=223 Identities=14% Similarity=0.148 Sum_probs=145.3
Q ss_pred ceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCee
Q 004410 240 SATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 240 ~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
+..|+|++. ++++....++|..|+....... ...+...+.+++++++|+++++. ++.|.+||..+++.
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---------RVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA 85 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------EEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcEE---------EEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE
Confidence 378999655 5666677899999997654321 11234679999999999966654 56799999877653
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
........ ......+.++++.+
T Consensus 86 ~~~~~~~~----------------------------------------------------------~~~~~~~~di~~d~ 107 (297)
T 3g4e_A 86 VVLATVDN----------------------------------------------------------DKKNNRFNDGKVDP 107 (297)
T ss_dssp EEEEECCT----------------------------------------------------------TCSSEEEEEEEECT
T ss_pred EEEEecCC----------------------------------------------------------CCCCCCCCCEEECC
Confidence 21110000 00123467899999
Q ss_pred CCeEEEEeC----------CCcEEEEeCC-CCeEEEEEecCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEEc--CCCeEE
Q 004410 399 NGFLLSSSA----------DKTVRLWQVG-IDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEV--RRCQVV 464 (755)
Q Consensus 399 ~~~L~s~s~----------Dg~V~iWdl~-s~~~~~~~~h~~~V~~i~fsp~d~~~l-~sgs~Dg~V~iwdl--~~~~~~ 464 (755)
+|.|+.++. .....||.+. .++......+......++|+| +++.| ++.+.++.|.+|++ .++.+.
T Consensus 108 dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~ 186 (297)
T 3g4e_A 108 AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQIS 186 (297)
T ss_dssp TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEE
T ss_pred CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCccc
Confidence 994444432 1233455443 244444444556678999999 88755 55566789999997 455432
Q ss_pred ------EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc-CCCCCEEE
Q 004410 465 ------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS-PSDPSKVI 537 (755)
Q Consensus 465 ------~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs-p~d~~~l~ 537 (755)
.+......+..++++++|++.++....+.|.+||..+++++.... .+...+++++|. | +.+.|+
T Consensus 187 ~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~--------~p~~~~t~~~f~g~-d~~~L~ 257 (297)
T 3g4e_A 187 NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK--------LPVDKTTSCCFGGK-NYSEMY 257 (297)
T ss_dssp EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--------CSSSBEEEEEEESG-GGCEEE
T ss_pred CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--------CCCCCceEEEEeCC-CCCEEE
Confidence 222234568899999999877777777889999999887765432 234578999998 6 666665
Q ss_pred EEEC
Q 004410 538 VTSA 541 (755)
Q Consensus 538 s~s~ 541 (755)
+++.
T Consensus 258 vt~~ 261 (297)
T 3g4e_A 258 VTCA 261 (297)
T ss_dssp EEEB
T ss_pred EEcC
Confidence 5543
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.14 E-value=2.6e-09 Score=114.09 Aligned_cols=279 Identities=14% Similarity=0.063 Sum_probs=172.5
Q ss_pred cCcceeecCCCCeeEEee--CCCeEEEEECCCCcccccccccc-eeeecccccEEEEEEecCCCEEEEEcC-----CCcE
Q 004410 237 RHGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELSSLYTG-QEFLAHEGSILTMKFSLDGQYLASGGE-----DGTV 308 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs--~dg~V~Vw~~~~~~~~~~~~~~~-~~l~~H~~~V~~l~fspdg~~LaSgs~-----Dg~I 308 (755)
....++++|+|+++++.. .++.++||.+... . +..+... ....+|-..+..|+++++|+++++-.. ++.|
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-G-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-E-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCC-C-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 445699999999988854 2343555554322 1 2222110 112346678999999999987666543 5789
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.+||+.+++.+..+..+.. ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~--------------------------------------------------------~~~~~ 119 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPP--------------------------------------------------------ITLSN 119 (343)
T ss_dssp EEEETTTTEEEEEEECCTT--------------------------------------------------------TSCTT
T ss_pred EEEECCCCeEEEEEECChh--------------------------------------------------------hcccc
Confidence 9999988875544432110 01133
Q ss_pred CCEEEEEEcCC-Ce-EEEEe---CCCcEEEEeCCCCeEEEEEe-cCCcEE-EEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 389 SEVLDLSWSKN-GF-LLSSS---ADKTVRLWQVGIDRCLRVFS-HNNYVT-SVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~-~~-L~s~s---~Dg~V~iWdl~s~~~~~~~~-h~~~V~-~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
..+.++++.++ +. +++-. .++.|.+||+.+++..+.+. |..... ...+.+ ++..|.+.+.++.++.|.
T Consensus 120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~---- 194 (343)
T 2qe8_A 120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH---- 194 (343)
T ss_dssp CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC----
T ss_pred cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE-CCEEEEeccCCCceecee----
Confidence 45678889875 44 44544 67899999999888777663 211110 134555 677777777888876653
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeCCC-cEEEEECC---CCeEee---eeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDIK---DNQLYQ---QNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~dg-~I~iwD~~---~~~~~~---~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
..+..|+|+|+|+.|+++...+ .+..++.. .+.+.. ...+...+ +.....++++.+ ++.
T Consensus 195 ---------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g----~~g~pdgia~d~-~G~ 260 (343)
T 2qe8_A 195 ---------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS----EKPICDGISIDK-DHN 260 (343)
T ss_dssp ---------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE----ECCSCSCEEECT-TCC
T ss_pred ---------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc----cCCCCceEEECC-CCC
Confidence 2467899999999999887766 45555432 111000 00000000 112456789999 788
Q ss_pred EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 535 KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 535 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
++++...++.|.+||..+........ .........++|.++|+++++.+..+.+.+|+
T Consensus 261 l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 261 IYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 88888889999999983332222211 22345688999999999888887655554443
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.07 E-value=6.9e-08 Score=102.18 Aligned_cols=220 Identities=16% Similarity=0.132 Sum_probs=140.9
Q ss_pred ceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCee
Q 004410 240 SATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 240 ~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
...|+|++. ++++...++.|.+|+...+... .+ .+...|.+++|+|+|+++++. .+ .|.+||..+++.
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--------~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKT--------VH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--------EE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE--------EE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE
Confidence 378999855 5566667889999997654321 11 124579999999999987765 34 488999876653
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
....... . ......+.++++++
T Consensus 122 ~~~~~~~----------------------------------------------------~------~~~~~~~~~i~~d~ 143 (326)
T 2ghs_A 122 TLHAELE----------------------------------------------------S------DLPGNRSNDGRMHP 143 (326)
T ss_dssp EEEECSS----------------------------------------------------T------TCTTEEEEEEEECT
T ss_pred EEEeeCC----------------------------------------------------C------CCCCCCCCCEEECC
Confidence 2100000 0 00123578899999
Q ss_pred CCeEEEEeC-------CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCcEEEEEcC--CC-e-----
Q 004410 399 NGFLLSSSA-------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVR--RC-Q----- 462 (755)
Q Consensus 399 ~~~L~s~s~-------Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~V~iwdl~--~~-~----- 462 (755)
+|.++.++. .+.|..++ +++......+......++|+| +++.++ +.+.++.|.+||+. ++ .
T Consensus 144 ~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~ 220 (326)
T 2ghs_A 144 SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE 220 (326)
T ss_dssp TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCce
Confidence 994444432 24555566 565544444445678999999 887664 44567899999986 55 2
Q ss_pred EE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc-CCCCCEEEEEE
Q 004410 463 VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS-PSDPSKVIVTS 540 (755)
Q Consensus 463 ~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs-p~d~~~l~s~s 540 (755)
.. .+......+..+++.++|.+.++...++.|.+||. +++..... ..+...+++++|. | ++..|++++
T Consensus 221 ~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i--------~~~~~~~~~~af~g~-d~~~L~vt~ 290 (326)
T 2ghs_A 221 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY--------EVPGKQTTCPAFIGP-DASRLLVTS 290 (326)
T ss_dssp EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE--------ECSCSBEEEEEEEST-TSCEEEEEE
T ss_pred EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE--------ECCCCCcEEEEEecC-CCCEEEEEe
Confidence 22 22223456788999999987776666788999998 45444322 1234568999998 7 666565554
Q ss_pred C
Q 004410 541 A 541 (755)
Q Consensus 541 ~ 541 (755)
.
T Consensus 291 ~ 291 (326)
T 2ghs_A 291 A 291 (326)
T ss_dssp B
T ss_pred c
Confidence 3
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.06 E-value=9.8e-09 Score=120.58 Aligned_cols=236 Identities=10% Similarity=0.078 Sum_probs=147.0
Q ss_pred CcceeecCCCCeeEEe-----eCCCeEEEEECCCCcccccccccceeeecccccE--EEEEEecCCCEEEEEcCCCc---
Q 004410 238 HGSATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSI--LTMKFSLDGQYLASGGEDGT--- 307 (755)
Q Consensus 238 ~~~~~~spdg~~lasg-----s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V--~~l~fspdg~~LaSgs~Dg~--- 307 (755)
+..++|||||++||.+ +....|+|||+.++.... .+...+ ..++|+ ||+.|+.++.+..
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~----------~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE----------TPLKDVKFSGISWL-GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE----------EEEEEEESCCCEEE-TTTEEEEEESSCCC--
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc----------cccCCceeccEEEe-CCCEEEEEEecCcccc
Confidence 3447899999998853 334679999988654211 122222 568999 9999999887743
Q ss_pred ----------EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceecc
Q 004410 308 ----------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (755)
Q Consensus 308 ----------I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (755)
|++|++.++....
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~--------------------------------------------------------- 222 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDD--------------------------------------------------------- 222 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGC---------------------------------------------------------
T ss_pred cccccCCCcEEEEEECCCCcccc---------------------------------------------------------
Confidence 7777765543100
Q ss_pred CccceEecC-CCCCEEEEEEcCCC-eEE-EEeC---CCcEEEEeCCCC--eEEEEEecCCcEEEEEEeeCCCCEEEEEeC
Q 004410 378 EKPLHEFQG-HSSEVLDLSWSKNG-FLL-SSSA---DKTVRLWQVGID--RCLRVFSHNNYVTSVAFNPVDDNYFISGSI 449 (755)
Q Consensus 378 ~~~~~~~~g-h~~~V~~l~~s~~~-~L~-s~s~---Dg~V~iWdl~s~--~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~ 449 (755)
..+..... |...+..+.|+|++ +|+ +.+. ...|+++|+.++ +......+....... +++.++.+++....
T Consensus 223 -~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~ 300 (693)
T 3iuj_A 223 -RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNR 300 (693)
T ss_dssp -EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECT
T ss_pred -eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECC
Confidence 01111223 44557789999999 554 3332 358999999776 344444455555555 55624445555544
Q ss_pred C---CcEEEEEcCCCeE---EEeccCCcceEEEEEccCCCeEEEEeCCC---cEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 450 D---GKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 450 D---g~V~iwdl~~~~~---~~~~~~~~~V~~v~~spdg~~la~gs~dg---~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
+ +.|.++|+.++.. ..+..+...+. .|+++++.|+....++ .|++||+.++.... +.+ ...
T Consensus 301 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~---l~~-----p~~ 370 (693)
T 3iuj_A 301 DAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVRE---VAL-----PGL 370 (693)
T ss_dssp TCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEE---ECC-----SSS
T ss_pred CCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEE---eec-----CCC
Confidence 4 5799999987653 34555555554 8999999888776544 68999988654321 111 122
Q ss_pred CCeEEEEEcCCCCCEEEEEECC----CcEEEEECCcce
Q 004410 521 KRITGFQFSPSDPSKVIVTSAD----SLVRVLCGENVV 554 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~D----g~I~iwd~~~~~ 554 (755)
..+..+.++| ++..++....+ +.|..||..+..
T Consensus 371 ~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 371 GSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SEEEECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ceEEeeecCC-CCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4566777888 44444444333 789999976543
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.06 E-value=1.2e-08 Score=107.03 Aligned_cols=225 Identities=11% Similarity=0.048 Sum_probs=146.1
Q ss_pred cceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 239 GSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 239 ~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
....|+|+|+ +++++..++.|..|+..... +.+..+...+..++++++|+++++...++.|.+|+.. ++
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~---------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWREDGTV---------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEETTSCE---------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeCCCCE---------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 3488999999 66777788999999863221 2234456778999999999977776666789999864 43
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC-CCCCEEEEEE
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSW 396 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~l~~ 396 (755)
.. .+.. ...+ ....+.++++
T Consensus 118 ~~-~~~~----------------------------------------------------------~~~~~~~~~~~~i~~ 138 (305)
T 3dr2_A 118 AH-LLVG----------------------------------------------------------RYAGKRLNSPNDLIV 138 (305)
T ss_dssp EE-EEEC----------------------------------------------------------EETTEECSCCCCEEE
T ss_pred EE-EEEe----------------------------------------------------------ccCCCccCCCCCEEE
Confidence 21 1100 0000 1123556888
Q ss_pred cCCCeEEE-----EeC-------------CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC------Cc
Q 004410 397 SKNGFLLS-----SSA-------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID------GK 452 (755)
Q Consensus 397 s~~~~L~s-----~s~-------------Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D------g~ 452 (755)
.++|.+.. +.. .+.|..||..+++..... .......++|+| +++.|+.+... +.
T Consensus 139 d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 139 ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECT-TSSEEEEEECCC---CCCE
T ss_pred CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcC-CCCEEEEEecCCcCCCCCE
Confidence 88884443 322 256788887767655444 445678899999 88877776665 78
Q ss_pred EEEEEcCCCeEE----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 453 VRIWEVRRCQVV----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 453 V~iwdl~~~~~~----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
|++|++....+. ...........++++++|+ |.+++.+ .|.+|+.. ++.+..+. .+ ..+..++|
T Consensus 217 i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~-g~~~~~~~--------~~-~~~~~~~f 284 (305)
T 3dr2_A 217 ITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSD-GQLLGHIP--------TP-GTASNCTF 284 (305)
T ss_dssp EEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTT-SCEEEEEE--------CS-SCCCEEEE
T ss_pred EEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCC-CCEEEEEE--------CC-CceeEEEE
Confidence 999998765421 1111234456789999998 5555544 59999985 44433221 11 24788999
Q ss_pred cCCCCCEEEEEECCCcEEE
Q 004410 529 SPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 529 sp~d~~~l~s~s~Dg~I~i 547 (755)
.| +++.|++++.++..++
T Consensus 285 ~~-d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 285 DQ-AQQRLFITGGPCLWML 302 (305)
T ss_dssp CT-TSCEEEEEETTEEEEE
T ss_pred eC-CCCEEEEEcCCeEEEE
Confidence 97 7788888877654443
No 220
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.06 E-value=1e-08 Score=109.94 Aligned_cols=254 Identities=12% Similarity=0.036 Sum_probs=157.3
Q ss_pred eeecCCCCeeEEee----------CCCeEEEEECCCCcccccccccc--eeeecccccEEEEEEecCCCEEEEEcC--CC
Q 004410 241 ATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--DG 306 (755)
Q Consensus 241 ~~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~--~~l~~H~~~V~~l~fspdg~~LaSgs~--Dg 306 (755)
++++|||++|+++. .++.|.+||..+... ...+... .... ....-..++|+|||++|+.+.. ++
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v-~~~I~v~~g~r~~-~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP-TADIELPDAPRFL-VGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEEETTCCCCC-BSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE-EEEEECCCccccc-cCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 89999999887765 367899999876432 1111100 0000 0112346899999999888864 68
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|.|+|+.+++.+.++.....
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~----------------------------------------------------------- 181 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDC----------------------------------------------------------- 181 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSE-----------------------------------------------------------
T ss_pred eEEEEECCCCcEEEEEECCCc-----------------------------------------------------------
Confidence 999999999987766542110
Q ss_pred CCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CeEEEEEe-----cCCcEE-EEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-----HNNYVT-SVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 387 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s-~~~~~~~~-----h~~~V~-~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
...+ |.+ .+++.+.||.+.+.++.+ ++...... ....+. ...|.+.++++++ .+.+|.|.+.|
T Consensus 182 ------~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d 253 (386)
T 3sjl_D 182 ------YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQID 253 (386)
T ss_dssp ------EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEE
T ss_pred ------ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEE
Confidence 0111 222 455666677776666654 44322111 111221 2356532665544 56689999999
Q ss_pred cCCCeE--EE-ec--c--------CCcceEEEEEccCCCeEEEEeC----------CCcEEEEECCCCeEeeeeeEEecc
Q 004410 458 VRRCQV--VD-YT--D--------IREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 458 l~~~~~--~~-~~--~--------~~~~V~~v~~spdg~~la~gs~----------dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
+.+... .. +. . .......++++++++.+++... .+.|.++|+.+++.+..+...
T Consensus 254 ~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--- 330 (386)
T 3sjl_D 254 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--- 330 (386)
T ss_dssp CTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---
T ss_pred CCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---
Confidence 976642 21 11 0 1223445788999999988753 246999999999988765542
Q ss_pred cccCCCCCeEEEEEcCCCCC-EEEEEE-CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecC
Q 004410 515 KKKLPGKRITGFQFSPSDPS-KVIVTS-ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~-~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspd 576 (755)
..+..++++| +++ +|+++. .++.|.++|..+..........+ .-..+.+++|
T Consensus 331 ------~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~---~p~~l~~s~d 384 (386)
T 3sjl_D 331 ------HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG---HGPQVITTAD 384 (386)
T ss_dssp ------EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC---SSCCEEEECC
T ss_pred ------CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC---CCceeEECCc
Confidence 3678999999 554 666654 58999999998876555443333 3345566665
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.97 E-value=3.1e-07 Score=99.13 Aligned_cols=191 Identities=11% Similarity=0.158 Sum_probs=128.2
Q ss_pred EEEEEcCCCeEEEEeCC------CcEEEEeCCCCeEEEEEecC----CcEEEEEEeeCCCCEEEEEe-------------
Q 004410 392 LDLSWSKNGFLLSSSAD------KTVRLWQVGIDRCLRVFSHN----NYVTSVAFNPVDDNYFISGS------------- 448 (755)
Q Consensus 392 ~~l~~s~~~~L~s~s~D------g~V~iWdl~s~~~~~~~~h~----~~V~~i~fsp~d~~~l~sgs------------- 448 (755)
..+...|+|.++++..+ +.|.++|..+.+.+..+... ..-..+.|+| +++.+++..
T Consensus 141 h~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 141 HTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred cceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence 45677888844444443 78999999999999988522 2345688899 888888874
Q ss_pred ------CCCcEEEEEcCCCeEEEeccCC---cceEEEEE--ccCCCeEEEEe------CCCcEEEEECCCCeEeeeeeEE
Q 004410 449 ------IDGKVRIWEVRRCQVVDYTDIR---EIVSAVCY--CPDGKGGIVGT------MTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 449 ------~Dg~V~iwdl~~~~~~~~~~~~---~~V~~v~~--spdg~~la~gs------~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
.+.+|.+||+.+++++...... .....+.| +|+++++.+++ .+++|.+|....+.......+.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 4789999999998877544443 34556656 99999998877 4668888776666543333222
Q ss_pred eccccc---C---------CCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEECCcc-eeeEEEee-ec-c-----------
Q 004410 512 LQGKKK---L---------PGKRITGFQFSPSDPSKVIVTSA-DSLVRVLCGENV-VGKFKASA-FR-V----------- 564 (755)
Q Consensus 512 ~~~~~~---~---------~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~iwd~~~~-~~~~~~~~-~~-~----------- 564 (755)
+..... . .......+.++| |+++|.++.. .+.|.+||+.+. ..+..... .+ .
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~ 378 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK 378 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred CCCccccccccccccccccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence 222110 0 034678899999 7777776665 789999998532 22222211 11 0
Q ss_pred -CCceEEEEEecCCCEEEEEe
Q 004410 565 -AGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 565 -~~~v~~l~fspdg~~L~sgs 584 (755)
.+.-..+.++|||++|+++.
T Consensus 379 ~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 379 LTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCCEEEEcCCCCEEEEEc
Confidence 01346789999999999998
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.94 E-value=2.7e-08 Score=106.64 Aligned_cols=262 Identities=10% Similarity=-0.039 Sum_probs=159.8
Q ss_pred eEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CCCcEEEEEccCCeeeeeeecCCC
Q 004410 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVRVWKVIEHERLDGFDVQDT 327 (755)
Q Consensus 258 ~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~Dg~I~vWdv~~~~~~~~~~~~~~ 327 (755)
+|.|.|..+... + .++..-..+ .+.++|||++|+++. .++.|.+||+.+++.+.++..+..
T Consensus 47 ~vsvID~~t~~v-~------~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVT-L------GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEE-E------EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred eEEEEECCCCeE-E------EEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence 788999765432 2 233322334 699999999988886 368899999999988776643210
Q ss_pred CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe
Q 004410 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (755)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s 406 (755)
.. ...+ .....++++||| +|+.+.
T Consensus 118 ~~-----------------------------------------------------~~~g--~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 118 PR-----------------------------------------------------FSVG--PRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp CS-----------------------------------------------------CCBS--CCTTSEEECTTSSCEEEEE
T ss_pred cc-----------------------------------------------------cccC--CCcceEEEcCCCCEEEEEc
Confidence 00 0000 112348899999 777776
Q ss_pred C--CCcEEE--EeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-----CeEEE-----eccCCcc
Q 004410 407 A--DKTVRL--WQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-----CQVVD-----YTDIREI 472 (755)
Q Consensus 407 ~--Dg~V~i--Wdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-----~~~~~-----~~~~~~~ 472 (755)
. ...|.+ +|+.+ +..+.-.+. +.+.|.....+++.+.||++.+.|+.+ +++.. +.....+
T Consensus 143 ~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 143 FGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp CSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred cCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence 4 467888 99877 444432221 223453456677778899999999987 44321 1111222
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc-ccCCC---CCeEEEEEcCCCCCEEEEEEC-------
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK-KKLPG---KRITGFQFSPSDPSKVIVTSA------- 541 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~-~~~~~---~~I~~v~fsp~d~~~l~s~s~------- 541 (755)
. . .+++..++..+. +.+.+.|+.+........+.+... ..... .....++++| +++.++++..
T Consensus 217 ~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 217 A---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCL 290 (368)
T ss_dssp E---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTT
T ss_pred c---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCccc
Confidence 2 3 666777777677 999999997643211111111000 00000 1111267999 6666665532
Q ss_pred --CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCC
Q 004410 542 --DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 542 --Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
++.+.++|..+........ .......++|+|||+ .+++.. .++.|.++|+.+.+
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~---vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred ccCCCEEEEECCCCeEEEEEE---CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 2356699988765443332 112578899999998 456666 59999999999887
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.93 E-value=5e-08 Score=104.07 Aligned_cols=188 Identities=13% Similarity=0.109 Sum_probs=126.7
Q ss_pred CCCCCEEEEEEcCCCeEEEEeC------CCcEEEEeCCCCeEEEEEec-------CCcEEEEEEeeCCCCEEEEEe---C
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSA------DKTVRLWQVGIDRCLRVFSH-------NNYVTSVAFNPVDDNYFISGS---I 449 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~------Dg~V~iWdl~s~~~~~~~~h-------~~~V~~i~fsp~d~~~l~sgs---~ 449 (755)
+|...+..+++.+++.|+.+.. +..|.+||+.+++.+..+.. ...+..++++|.++..+++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 4667899999999995555443 57899999999998777742 245789999983344556555 6
Q ss_pred CCcEEEEEcCCCeEEEeccC-Ccc-eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 450 DGKVRIWEVRRCQVVDYTDI-REI-VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 450 Dg~V~iwdl~~~~~~~~~~~-~~~-V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
++.|.+||+.+++....... ... .....+.++|..+.+...+|.+..|. ..+..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~----------------------~~~~gia 201 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH----------------------LGVNGIV 201 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC----------------------CCEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee----------------------cccceeE
Confidence 78999999998887654432 111 00134555777777777777664442 2357899
Q ss_pred EcCCCCCEEEEEECCC-cEEEEECCcce----------eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 528 FSPSDPSKVIVTSADS-LVRVLCGENVV----------GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg-~I~iwd~~~~~----------~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
|+| +++.|+++..++ .|..++..... ..+.. .++.+....++++++|.++++...++.|.+||..+
T Consensus 202 ~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 202 LDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER--YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp ECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE--EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT
T ss_pred ecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe--cccCCCCceEEECCCCCEEEEccCCCeEEEEECCC
Confidence 999 788888777665 55555432110 00111 12333556789999999999999999999999844
Q ss_pred CC
Q 004410 597 QD 598 (755)
Q Consensus 597 ~~ 598 (755)
++
T Consensus 279 G~ 280 (343)
T 2qe8_A 279 RA 280 (343)
T ss_dssp TE
T ss_pred CC
Confidence 43
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.90 E-value=2.2e-06 Score=92.26 Aligned_cols=302 Identities=11% Similarity=0.032 Sum_probs=173.5
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeee-cc--cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeee
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF 322 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~-~H--~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~ 322 (755)
.+..+++++.++.|..+|..++..... ........ .+ ...+.+.- ..++..|+.++.++.|..+|..+++.+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWS-VSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEE-EECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeee-ecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 466777888889999999876543221 11100000 00 12232221 124557777888999999999999887766
Q ss_pred ecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec---------CCCCCEEE
Q 004410 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ---------GHSSEVLD 393 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------gh~~~V~~ 393 (755)
............. ....+....++.+..++.... +.+..+. +...++
T Consensus 130 ~~~~~~~~~p~~~------------------~~~v~v~~~~g~l~~~d~~tG----~~~W~~~~~~~~~~~~~~~~~~-- 185 (376)
T 3q7m_A 130 KVAGEALSRPVVS------------------DGLVLIHTSNGQLQALNEADG----AVKWTVNLDMPSLSLRGESAPT-- 185 (376)
T ss_dssp ECSSCCCSCCEEE------------------TTEEEEECTTSEEEEEETTTC----CEEEEEECCC-----CCCCCCE--
T ss_pred eCCCceEcCCEEE------------------CCEEEEEcCCCeEEEEECCCC----cEEEEEeCCCCceeecCCCCcE--
Confidence 5443211111100 011122233344444443221 1111111 111221
Q ss_pred EEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcE-----EE---EEEee-CCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV-----TS---VAFNP-VDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 394 l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V-----~~---i~fsp-~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
.. ++.++.++.++.|..+|..+++.+..+...... .. +...| ..+..++.++.++.|..+|..+++.+
T Consensus 186 --~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~ 262 (376)
T 3q7m_A 186 --TA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM 262 (376)
T ss_dssp --EE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE
T ss_pred --EE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE
Confidence 11 457888888999999999999988776532110 00 10111 13567788888999999999999877
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
..... .....+.. ++..|++++.+|.|..+|..+++.+.... . .....+..... .+..|++++.+|.
T Consensus 263 w~~~~-~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~----~---~~~~~~~~~~~---~~~~l~v~~~~g~ 329 (376)
T 3q7m_A 263 WKREL-GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS----D---LLHRLLTSPVL---YNGNLVVGDSEGY 329 (376)
T ss_dssp EEECC-CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC----T---TTTSCCCCCEE---ETTEEEEECTTSE
T ss_pred eeccC-CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec----c---cCCCcccCCEE---ECCEEEEEeCCCe
Confidence 43332 23344443 56788889999999999999998764321 0 11112222222 2367888999999
Q ss_pred EEEEECCcceeeEEEeeeccCCceEE-EEEecCCCEEEEEeCCCcEEEEE
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMF-ATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~-l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
|.++|..+......... ....+.. ... .+..|+.++.||.|+.|+
T Consensus 330 l~~~d~~tG~~~~~~~~--~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 330 LHWINVEDGRFVAQQKV--DSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEETTTCCEEEEEEC--CTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEEECCCCcEEEEEec--CCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 99999888665554422 1122221 222 256788899999999997
No 225
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.88 E-value=7.5e-08 Score=105.02 Aligned_cols=240 Identities=10% Similarity=-0.002 Sum_probs=149.4
Q ss_pred ceeecCCCCeeEEee----------CCCeEEEEECCCCcccccccccc--eeeecccccEEEEEEecCCCEEEEEcC--C
Q 004410 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--D 305 (755)
Q Consensus 240 ~~~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~--~~l~~H~~~V~~l~fspdg~~LaSgs~--D 305 (755)
.++++|||++|+++. .++.|.++|..+... ...+... ..+. +......+.|+|||++|+.+.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v-v~~I~v~g~~r~~-~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP-IADIELPDAPRFL-VGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEEETTCCCCC-BSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE-EEEEECCCccccc-cCCCcceEEEcCCCCEEEEEecCCC
Confidence 589999999888775 467899999776432 1111110 0000 0112345799999999998864 5
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.|.|.|+.+++.+..+.....
T Consensus 200 ~~VsVID~~t~kvv~~I~v~g~---------------------------------------------------------- 221 (426)
T 3c75_H 200 PAVGVVDLEGKTFDRMLDVPDC---------------------------------------------------------- 221 (426)
T ss_dssp CEEEEEETTTTEEEEEEECCSE----------------------------------------------------------
T ss_pred CeEEEEECCCCeEEEEEEcCCc----------------------------------------------------------
Confidence 7899999999987766543110
Q ss_pred CCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEE----Ee-cCCc-EEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRV----FS-HNNY-VTSVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 386 gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~----~~-h~~~-V~~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
....|++ .+++.+.||.+.+.+..+++.... +. .... ...+.|.+ ++..++..+..+.|.+.|
T Consensus 222 --------~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 222 --------YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp --------EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEE
T ss_pred --------eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEe
Confidence 0111111 333344444444444433333211 11 1111 12346788 677766667889999999
Q ss_pred cCCCeEEEecc-------------CCcceEEEEEccCCCeEEEEeC----------CCcEEEEECCCCeEeeeeeEEecc
Q 004410 458 VRRCQVVDYTD-------------IREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 458 l~~~~~~~~~~-------------~~~~V~~v~~spdg~~la~gs~----------dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
+.......... .......++++|+++.+++... .+.|.++|+.+.+.+..+...
T Consensus 293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--- 369 (426)
T 3c75_H 293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--- 369 (426)
T ss_dssp ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---
T ss_pred ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---
Confidence 97655431110 0111223789999998888653 357999999999988765432
Q ss_pred cccCCCCCeEEEEEcCCCCC-EEEEEE-CCCcEEEEECCcceeeEE
Q 004410 515 KKKLPGKRITGFQFSPSDPS-KVIVTS-ADSLVRVLCGENVVGKFK 558 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~-~l~s~s-~Dg~I~iwd~~~~~~~~~ 558 (755)
....++.|+| +++ +++++. .++.|.|+|..+......
T Consensus 370 ------~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 370 ------HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp ------EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred ------CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 2478899999 676 888887 599999999988655433
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.85 E-value=1.6e-07 Score=109.65 Aligned_cols=187 Identities=11% Similarity=0.053 Sum_probs=127.3
Q ss_pred CCcEEEEeCCCCeEEEEEecCCc---------------------------------EEEEEEeeCCCCEEEEEeCCC---
Q 004410 408 DKTVRLWQVGIDRCLRVFSHNNY---------------------------------VTSVAFNPVDDNYFISGSIDG--- 451 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~h~~~---------------------------------V~~i~fsp~d~~~l~sgs~Dg--- 451 (755)
++.|+.||..+++.+-.+..... ...++++| ++++++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 68999999999999877742111 13578888 778888877664
Q ss_pred ----------------cEEEEEcCCCeEEEe-cc--CC-------cceEEEEEccCC---CeEEEEeCCCcEEEEECCCC
Q 004410 452 ----------------KVRIWEVRRCQVVDY-TD--IR-------EIVSAVCYCPDG---KGGIVGTMTGNCRFYDIKDN 502 (755)
Q Consensus 452 ----------------~V~iwdl~~~~~~~~-~~--~~-------~~V~~v~~spdg---~~la~gs~dg~I~iwD~~~~ 502 (755)
.|..+|..+++.+-. .. +. ....-+....+| ..+++++.+|.++++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 499999999988732 21 21 123333444578 68899999999999999999
Q ss_pred eEeeeeeEEecc---cccCCCC------------------------CeEEEEEcCCCCCEEEEEEC--------------
Q 004410 503 QLYQQNQICLQG---KKKLPGK------------------------RITGFQFSPSDPSKVIVTSA-------------- 541 (755)
Q Consensus 503 ~~~~~~~~~~~~---~~~~~~~------------------------~I~~v~fsp~d~~~l~s~s~-------------- 541 (755)
+++......... ....... .-..++++| +..++++...
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~ 426 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEF 426 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeeccccccc
Confidence 987654321000 0000000 112568888 6666666543
Q ss_pred -----------------------------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 004410 542 -----------------------------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 542 -----------------------------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
.+.|..||..+.+...... +..++....+..++.+++.++.||.|++|
T Consensus 427 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~---~~~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 427 NQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE---HVSPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp TCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE---ESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred ccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC---CCCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 2779999998877666643 33344555677788899999999999999
Q ss_pred EcCCCCc
Q 004410 593 NYSNQDK 599 (755)
Q Consensus 593 d~~~~~~ 599 (755)
|..+++.
T Consensus 504 D~~tG~~ 510 (677)
T 1kb0_A 504 HAATGEK 510 (677)
T ss_dssp ETTTCCE
T ss_pred ECCCCce
Confidence 9999984
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.83 E-value=1.9e-07 Score=109.25 Aligned_cols=288 Identities=13% Similarity=0.077 Sum_probs=173.4
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeee---ccc-ccE-EEEEEecCCCEEEEEcCCCcEEEEEccCCeeeee
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL---AHE-GSI-LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG 321 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~---~H~-~~V-~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~ 321 (755)
+..|++++.++.|..+|..++..... ........ ... ..+ ..+.. ++..|+.++.|+.|..+|..+|+.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWK-YDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEE-ECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEE-EcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 55666777788888888766553222 11100000 000 000 11122 356788889999999999999987765
Q ss_pred eecC-CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 322 FDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 322 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
+... .... . ......++. .++
T Consensus 147 ~~~~~~~~~---------------------------------------------------~--~~~~~sP~v-----~~g 168 (689)
T 1yiq_A 147 VDTRADHKR---------------------------------------------------S--YTITGAPRV-----VNG 168 (689)
T ss_dssp EECCSCTTS---------------------------------------------------C--CBCCSCCEE-----ETT
T ss_pred ecCcCCCCC---------------------------------------------------C--ccccCCcEE-----ECC
Confidence 5431 1000 0 000011111 134
Q ss_pred eEEEEe------CCCcEEEEeCCCCeEEEEEecC--C------------------------------cEEEEEEeeCCCC
Q 004410 401 FLLSSS------ADKTVRLWQVGIDRCLRVFSHN--N------------------------------YVTSVAFNPVDDN 442 (755)
Q Consensus 401 ~L~s~s------~Dg~V~iWdl~s~~~~~~~~h~--~------------------------------~V~~i~fsp~d~~ 442 (755)
.++.++ .++.|+.||..+++.+-.+... . ....++++| +.+
T Consensus 169 ~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~ 247 (689)
T 1yiq_A 169 KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELN 247 (689)
T ss_dssp EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTT
T ss_pred EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCC
Confidence 444433 3689999999999988776411 0 012578888 788
Q ss_pred EEEEEeCCCc-------------------EEEEEcCCCeEEE-ecc--CC-------cceEEEEEccCCC---eEEEEeC
Q 004410 443 YFISGSIDGK-------------------VRIWEVRRCQVVD-YTD--IR-------EIVSAVCYCPDGK---GGIVGTM 490 (755)
Q Consensus 443 ~l~sgs~Dg~-------------------V~iwdl~~~~~~~-~~~--~~-------~~V~~v~~spdg~---~la~gs~ 490 (755)
+++.++.++. |..+|..+++.+- +.. +. ..+.......+|+ .++.++.
T Consensus 248 ~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~ 327 (689)
T 1yiq_A 248 LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPK 327 (689)
T ss_dssp EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT
T ss_pred EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECC
Confidence 8888887764 9999999998873 221 11 1222223334665 7889999
Q ss_pred CCcEEEEECCCCeEeeeeeEEe-------c----------cc---ccC-----------CCCCeEEEEEcCCCCCEEEEE
Q 004410 491 TGNCRFYDIKDNQLYQQNQICL-------Q----------GK---KKL-----------PGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 491 dg~I~iwD~~~~~~~~~~~~~~-------~----------~~---~~~-----------~~~~I~~v~fsp~d~~~l~s~ 539 (755)
+|.++++|..+++++....... . .. ... ....-..++|+| +..++++.
T Consensus 328 ~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~ 406 (689)
T 1yiq_A 328 NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIP 406 (689)
T ss_dssp TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEE
T ss_pred CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEe
Confidence 9999999999999874322110 0 00 000 001122368888 55566654
Q ss_pred EC---------------------------------------------CCcEEEEECCcceeeEEEeeeccCCceEEEEEe
Q 004410 540 SA---------------------------------------------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFT 574 (755)
Q Consensus 540 s~---------------------------------------------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs 574 (755)
.. +|.|..||..+.+...... +..+.....++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~---~~~~~~~g~~~ 483 (689)
T 1yiq_A 407 AHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP---YVTIFNGGTLS 483 (689)
T ss_dssp EEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE---ESSSCCCCEEE
T ss_pred ccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc---CCCCccCccce
Confidence 22 3779999998877766653 22333444666
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 575 SDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 575 pdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
..+.+|+.++.||.|+.||..+++..
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCCEEEEECCCCcEEEEECCCCccc
Confidence 78889999999999999999999843
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.80 E-value=2.1e-06 Score=92.78 Aligned_cols=234 Identities=16% Similarity=0.201 Sum_probs=147.1
Q ss_pred eec--CCCCeeEE-eeCCCeEEEEECCCCcccccccccceeee------c-ccccEEEEEEecCCCEEEEEcCC------
Q 004410 242 TLK--PGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFL------A-HEGSILTMKFSLDGQYLASGGED------ 305 (755)
Q Consensus 242 ~~s--pdg~~las-gs~dg~V~Vw~~~~~~~~~~~~~~~~~l~------~-H~~~V~~l~fspdg~~LaSgs~D------ 305 (755)
.++ +++++|+. |..+++|.|+|+.+...... ..+++. . -...-..+..+|+| +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~---~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPK---IIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGP 163 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCE---EEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCce---eeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence 445 78886665 56689999999875433222 222221 0 11234567788999 77776655
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|.+.|..+++.+..+.....
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~---------------------------------------------------------- 185 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRG---------------------------------------------------------- 185 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCT----------------------------------------------------------
T ss_pred CeEEEEECCCCeEEEEEccCCC----------------------------------------------------------
Confidence 6799999888876655432111
Q ss_pred CCCCCEEEEEEcCCC-eEEEEe-------------------CCCcEEEEeCCCCeEEEEEecC---CcEEEEEE--eeCC
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSS-------------------ADKTVRLWQVGIDRCLRVFSHN---NYVTSVAF--NPVD 440 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s-------------------~Dg~V~iWdl~s~~~~~~~~h~---~~V~~i~f--sp~d 440 (755)
...--.++-|+|++ .+++.. ...+|.+||+.+++.+.++... .....|.| +| +
T Consensus 186 -~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-d 263 (462)
T 2ece_A 186 -DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-T 263 (462)
T ss_dssp -TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-T
T ss_pred -CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-C
Confidence 01112356778877 555553 3789999999999888888643 34556666 99 8
Q ss_pred CCEEEEEe------CCCcEEEEEcCCCe-----EEEeccC----------------CcceEEEEEccCCCeEEEEeC-CC
Q 004410 441 DNYFISGS------IDGKVRIWEVRRCQ-----VVDYTDI----------------REIVSAVCYCPDGKGGIVGTM-TG 492 (755)
Q Consensus 441 ~~~l~sgs------~Dg~V~iwdl~~~~-----~~~~~~~----------------~~~V~~v~~spdg~~la~gs~-dg 492 (755)
++++++++ .+++|.+|....+. .+..... ......|.++|||++|.++.. .+
T Consensus 264 g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d 343 (462)
T 2ece_A 264 KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG 343 (462)
T ss_dssp CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTT
T ss_pred CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCC
Confidence 88777666 56788877665543 2111110 245788999999999988776 67
Q ss_pred cEEEEECCCC-eEeeeeeEEecccc--------cCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 493 NCRFYDIKDN-QLYQQNQICLQGKK--------KLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 493 ~I~iwD~~~~-~~~~~~~~~~~~~~--------~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
.|.+||+... ++.....+...+.. ..-...-..++++| ++++|+++.
T Consensus 344 ~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 344 EVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp EEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred EEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 8999998632 22222223232211 00011357789999 888888876
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.70 E-value=6.3e-06 Score=88.60 Aligned_cols=270 Identities=11% Similarity=0.069 Sum_probs=156.9
Q ss_pred CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCce-eEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL-IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 296 g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
+..|+.++.++.|..+|..+++.+..+........ .......+ ....... ...+....++.+..++....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~-----~~v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW----FSKEPALLSGGVTVSG-----GHVYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---C----CSCCCCCEEEEEEEET-----TEEEEEETTSEEEEEETTTC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCcccccc----ccccCcccccCceEeC-----CEEEEEcCCCEEEEEECCCC
Confidence 56778888889999999999988776655322100 00000000 0000111 11122233444444444321
Q ss_pred eccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEE------EEEEeeCCCCEEEEEe
Q 004410 375 RLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVT------SVAFNPVDDNYFISGS 448 (755)
Q Consensus 375 ~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~------~i~fsp~d~~~l~sgs 448 (755)
+.+............... .++.++.++.++.|..+|..+++.+..+.....+. .... .+..++.++
T Consensus 124 ----~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~ 195 (376)
T 3q7m_A 124 ----TVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGG 195 (376)
T ss_dssp ----CEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECC
T ss_pred ----CEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEc
Confidence 112222211111111111 24588888999999999999999888776443332 2222 245778888
Q ss_pred CCCcEEEEEcCCCeEEEeccCCcc--------eEEEEEcc--CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 449 IDGKVRIWEVRRCQVVDYTDIREI--------VSAVCYCP--DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~~~~~~~~~~--------V~~v~~sp--dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
.++.|..+|..+++.+........ +..+...| .+..+++++.+|.+..+|..+++.+.....
T Consensus 196 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-------- 267 (376)
T 3q7m_A 196 DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-------- 267 (376)
T ss_dssp TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--------
T ss_pred CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--------
Confidence 899999999999887733222111 00011111 356788888999999999999987653221
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.....+.. ++..|++++.++.|..+|..+.......... ....+..+.. .+..|+.++.+|.|+++|..+++
T Consensus 268 --~~~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 268 --GSVNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp --CCEEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred --CCCCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 12334444 3568888889999999999887666554211 1112222232 35688889999999999999886
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.69 E-value=8.6e-07 Score=93.07 Aligned_cols=301 Identities=12% Similarity=0.046 Sum_probs=173.0
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeee
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~ 319 (755)
+..+..++. +..++.++.|..|+ ..+.. +.. +..+...+.++...++|. |..++.+ |..+|. +++..
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~-~~~------~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~ 90 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSV-KWF------FKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEK 90 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCE-EES------SCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGG
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcE-EEE------EecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEE
Confidence 355556665 55667788888888 54432 111 112345567777777775 4445544 888885 55554
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
..+............. .-..+.+..++.+..++.. . +.......+...+.++...++
T Consensus 91 ~~~~~~~~~~~~~~~~------------------~~~l~v~t~~~~l~~~d~~-g----~~~~~~~~~~~~~~~~~~~~~ 147 (330)
T 3hxj_A 91 WRFDTKKAIVSDFTIF------------------EDILYVTSMDGHLYAINTD-G----TEKWRFKTKKAIYATPIVSED 147 (330)
T ss_dssp GGSCC-----CCEEEE------------------TTEEEEECTTSEEEEECTT-S----CEEEEEECSSCCCSCCEECTT
T ss_pred EEEECCCCcccCceEE------------------CCEEEEEecCCEEEEEcCC-C----CEEEEEcCCCceeeeeEEcCC
Confidence 4433222111111110 1112223334445555443 1 122233333444556667777
Q ss_pred CeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEE
Q 004410 400 GFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVC 477 (755)
Q Consensus 400 ~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~ 477 (755)
+.|+.++.++.|..+|.. ++.+..+. ....+.++.+.+ ++.+++ ++ +.|..+| .+++.. ........+.++.
T Consensus 148 g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~ 221 (330)
T 3hxj_A 148 GTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPA 221 (330)
T ss_dssp SCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCE
T ss_pred CEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceE
Confidence 788888889999999998 77766664 345566777766 666544 44 8899999 665544 4444445678888
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeE
Q 004410 478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF 557 (755)
Q Consensus 478 ~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~ 557 (755)
..++| .|.+++.++.|..+|.. +....... . ....+..+.+.+ ...|.+++.++.|..+|. +.....
T Consensus 222 ~~~~g-~l~v~t~~~gl~~~~~~-g~~~~~~~--~------~~~~~~~~~~~~--~g~l~v~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 222 ISEDG-TIYVTSLDGHLYAINPD-GTEKWRFK--T------GKRIESSPVIGN--TDTIYFGSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp ECTTS-CEEEEETTTEEEEECTT-SCEEEEEE--C------SSCCCSCCEECT--TSCEEEECTTCEEEEECT-TSCEEE
T ss_pred ECCCC-eEEEEcCCCeEEEECCC-CCEeEEee--C------CCCccccceEcC--CCeEEEecCCCCEEEECC-CCcEEE
Confidence 88877 56667778889989854 44332211 1 111222344443 456778888989999985 333333
Q ss_pred EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 558 KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 558 ~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.. ......+.++...++|. |..++.+|.+++......+
T Consensus 289 ~~--~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 289 NF--ETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EE--ECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred EE--EcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 32 22344566677777776 5568899999998876544
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.68 E-value=2.5e-09 Score=115.49 Aligned_cols=180 Identities=12% Similarity=0.078 Sum_probs=104.1
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCc-ceE-E
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIRE-IVS-A 475 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~-~V~-~ 475 (755)
++.+++++.|+.|+.||..+++.+..+.. ..+.+..+.. ++..+++++.||.|+.||..+++.+ .+..+.. .+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 34889999999999999999999988866 5565555655 6778888889999999999887764 3322211 110 1
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG 555 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~ 555 (755)
.++. ++..|++++.++.|+.||..+++.+...... . ...++| ++..+++++.|+.|+.||..+...
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~--------~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA--------F----ADSLSP-STSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC--------C----cccccc-cCCEEEEEecCCEEEEEECCCCCE
Confidence 1111 3456788888999999999999886543211 0 234567 778899999999999999887655
Q ss_pred eEEEeeeccCCceEEEEEecCC---CEEEEEeCCCcEEEEEcCCCC
Q 004410 556 KFKASAFRVAGSQMFATFTSDG---KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 556 ~~~~~~~~~~~~v~~l~fspdg---~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
......... ...++..+. ..+++++.||.|+.||..+++
T Consensus 153 ~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 153 RWNATYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp CCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred EEeEecccc----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 444321211 122333332 567788999999999999887
No 232
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.68 E-value=3.1e-06 Score=85.90 Aligned_cols=201 Identities=9% Similarity=0.032 Sum_probs=137.1
Q ss_pred CEEEEEEcCCCeEEEE-eC--CCcEEEEeCCCCeEEEEEecCC--cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 390 EVLDLSWSKNGFLLSS-SA--DKTVRLWQVGIDRCLRVFSHNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~-s~--Dg~V~iWdl~s~~~~~~~~h~~--~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
....|.|++++.|+.+ +. ++.|++.|+.+++.+..+.... ....+++. .+.++++.-.++.+.++|..+.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4689999998844444 33 5899999999999999876333 33345554 3455556667899999999999888
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
...... .-....+++||+.++++..++.|.++|..+.+......+...+. ....++.+.|. ++..++....++.
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~---p~~~~nele~~--dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGH---RVIRLNELEYI--NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTE---ECCCEEEEEEE--TTEEEEEETTSSE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCc---ccccceeEEEE--CCEEEEecCCCCe
Confidence 544322 11124466789988888888999999999988776655432211 12346778887 4444444446789
Q ss_pred EEEEECCcceeeEEEeeecc-----------CCceEEEEEecCCCEE-EEEeCCCcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKASAFRV-----------AGSQMFATFTSDGKHV-VSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~-----------~~~v~~l~fspdg~~L-~sgs~Dg~I~iWd~~~~~ 598 (755)
|.+.|..+....-.....+. ......++|+|+++.| +++...+.|++-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999988654444322211 1356899999998755 555578899999987654
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.67 E-value=7.3e-09 Score=111.87 Aligned_cols=220 Identities=12% Similarity=0.037 Sum_probs=118.4
Q ss_pred CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 295 dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
++..|++++.||.|+.||..+|+.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------------------- 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------------------- 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence 577899999999999999999987654432
Q ss_pred eccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecC--CcEE-EEEEeeCCCCEEEEEeCC
Q 004410 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVT-SVAFNPVDDNYFISGSID 450 (755)
Q Consensus 375 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~--~~V~-~i~fsp~d~~~l~sgs~D 450 (755)
+.+.+..+..++ .+++++.|+.|+.||..+++.+..+... ..+. +..+ . .+..+++++.|
T Consensus 38 --------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~-~-~~~~v~~g~~d 101 (369)
T 2hz6_A 38 --------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCR-S-SDGILYMGKKQ 101 (369)
T ss_dssp --------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEE
T ss_pred --------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceE-e-cCCEEEEEeCC
Confidence 011111122345 6666789999999999998877665421 1110 0011 1 34577888889
Q ss_pred CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
+.|+.||..+++.+....... ...++|++..+++++.++.|+.||..+++.+......- .....+.+
T Consensus 102 g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~----------~~~~~~~~ 168 (369)
T 2hz6_A 102 DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD----------YAASLPED 168 (369)
T ss_dssp EEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE----------ECCBCCCC
T ss_pred CEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc----------ccCccccC
Confidence 999999999998774332222 24566788899999999999999999998765543211 01112222
Q ss_pred C--CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEE-EEEecCCCEE----EEEeCCCcEEEEEcCCCC
Q 004410 531 S--DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMF-ATFTSDGKHV----VSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 531 ~--d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~-l~fspdg~~L----~sgs~Dg~I~iWd~~~~~ 598 (755)
. ....+++++.|+.|..||..+........ ...++.. ..++++|... +.+ ++.++.+|..+++
T Consensus 169 ~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~---~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 169 DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN---YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGE 238 (369)
T ss_dssp CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE---CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHH
T ss_pred CccccceEEEECCCCEEEEEECCCCcEEEEec---CCCceEEEEEecCCceEeccceeec--ccceeeeehhcCC
Confidence 0 11567788999999999998876665542 3344433 4455566432 112 3455666655543
No 234
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.66 E-value=4.3e-06 Score=97.44 Aligned_cols=292 Identities=10% Similarity=0.065 Sum_probs=165.5
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC------CCcEEEEEccCCeee
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE------DGTVRVWKVIEHERL 319 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~------Dg~I~vWdv~~~~~~ 319 (755)
++..+++++.++.|..+|..++..... ........ +...+.+--.-.++ .|+.++. ++.|+.+|..+|+.+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~-~~~~~~~~-~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWH-QNTFEGQK-GSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEE-EETTTTCC-SSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEee-ecCCcCcC-cCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEE
Confidence 456788888899999999876654322 11100000 00111110011134 4454443 799999999999988
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
..+.............+ .... ....|.. ... .....+.......+++.++
T Consensus 204 W~~~~~~~~~~~~~~~~---------~~~~---------------g~~~w~~-----~g~-~~~~~~g~~~w~~~~~d~~ 253 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDE---------SMKR---------------AARTWDP-----SGK-WWEAGGGGTMWDSMTFDAE 253 (677)
T ss_dssp EEEESSCCCTTSCCSSH---------HHHH---------------HHTTSCG-----GGC-HHHHCEECCCCSCEEEETT
T ss_pred EEeccCCCCcccccccc---------cccc---------------ccccccc-----cCc-eeEeCCCcccccceeEcCC
Confidence 77654332210000000 0000 0000000 000 0000011122234667776
Q ss_pred C-eEEEEeCCC-------------------cEEEEeCCCCeEEEEEe---cC-------CcEEEEEEeeCCC---CEEEE
Q 004410 400 G-FLLSSSADK-------------------TVRLWQVGIDRCLRVFS---HN-------NYVTSVAFNPVDD---NYFIS 446 (755)
Q Consensus 400 ~-~L~s~s~Dg-------------------~V~iWdl~s~~~~~~~~---h~-------~~V~~i~fsp~d~---~~l~s 446 (755)
+ .++.+..++ .|..+|..+++.+-.+. |. ....-+.... ++ ..++.
T Consensus 254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~ 332 (677)
T 1kb0_A 254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILH 332 (677)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEE
T ss_pred CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEE
Confidence 6 666655543 59999999999988875 21 1223334444 56 68999
Q ss_pred EeCCCcEEEEEcCCCeEEEeccCC------------cce------------------------EEEEEccCCCeEEEEeC
Q 004410 447 GSIDGKVRIWEVRRCQVVDYTDIR------------EIV------------------------SAVCYCPDGKGGIVGTM 490 (755)
Q Consensus 447 gs~Dg~V~iwdl~~~~~~~~~~~~------------~~V------------------------~~v~~spdg~~la~gs~ 490 (755)
++.+|.|+++|..+++++...... ..+ ..++|+|++.++++...
T Consensus 333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~ 412 (677)
T 1kb0_A 333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ 412 (677)
T ss_dssp CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence 999999999999999887322110 001 15688999888888654
Q ss_pred C-------------------------------------------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 491 T-------------------------------------------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 491 d-------------------------------------------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
+ |.|..||+.+++.+...... ..+.+..
T Consensus 413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---------~~~~~g~ 483 (677)
T 1kb0_A 413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---------SPWNGGT 483 (677)
T ss_dssp ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES---------SSCCCCE
T ss_pred hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC---------CCCcCcc
Confidence 2 77999999999987654321 1223333
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s 582 (755)
+.. .+.++++++.|+.+++||..+......... .+.....-+.|..+|+.++.
T Consensus 484 ~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~-~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 484 LTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPT-GTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEE-TTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEEEETTEEEEE
T ss_pred eEe-CCCEEEEECCCCcEEEEECCCCceeeeeeC-CCCcccCCEEEEeCCEEEEE
Confidence 444 667888899999999999998777666532 22222334566788875443
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.64 E-value=3.8e-06 Score=98.11 Aligned_cols=181 Identities=12% Similarity=0.109 Sum_probs=118.2
Q ss_pred EEEEcCCC-eEEEEeCCC-------------------cEEEEeCCCCeEEEEEe---cC-------CcEEEEEEeeCCCC
Q 004410 393 DLSWSKNG-FLLSSSADK-------------------TVRLWQVGIDRCLRVFS---HN-------NYVTSVAFNPVDDN 442 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg-------------------~V~iWdl~s~~~~~~~~---h~-------~~V~~i~fsp~d~~ 442 (755)
.+++.+++ .++.++.++ .|..||+.+++.+-.+. |. ..+....... ++.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCc
Confidence 46677765 677776665 39999999999988775 21 1222223333 454
Q ss_pred ---EEEEEeCCCcEEEEEcCCCeEEEeccCCc----------------------------------------ceEEEEEc
Q 004410 443 ---YFISGSIDGKVRIWEVRRCQVVDYTDIRE----------------------------------------IVSAVCYC 479 (755)
Q Consensus 443 ---~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~----------------------------------------~V~~v~~s 479 (755)
.++.++.+|.|+++|..+++++....... .-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999998872111000 01126889
Q ss_pred cCCCeEEEEeC---------------------------------------------CCcEEEEECCCCeEeeeeeEEecc
Q 004410 480 PDGKGGIVGTM---------------------------------------------TGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 480 pdg~~la~gs~---------------------------------------------dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
|+..++++... +|.|+.||+.+++.+......
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--- 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--- 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence 98888877632 377999999999987654331
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCE-EEEEeC
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKH-VVSPSE 585 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~-L~sgs~ 585 (755)
..+..-.+.. .+.++++++.|+.++.||..+.+...+... .......-+.|..+|+. +++.+.
T Consensus 475 ------~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~-~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 475 ------TIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPA-ASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp ------SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ------CCccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeC-CCCcccCceEEEECCEEEEEEEec
Confidence 1122223444 667899999999999999998877666532 22222234667788874 444443
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.63 E-value=7.9e-07 Score=95.25 Aligned_cols=234 Identities=9% Similarity=-0.090 Sum_probs=135.6
Q ss_pred ceeecCCCCeeEEee----------CCCeEEEEECCCCcccccccccceeeecc-------cccEEEEEEecCCCEEEEE
Q 004410 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLAH-------EGSILTMKFSLDGQYLASG 302 (755)
Q Consensus 240 ~~~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H-------~~~V~~l~fspdg~~LaSg 302 (755)
.++++||++.++++. .++.|.+||..+... ..++..+ ......++|+|||++|+++
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-------v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVa 141 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-------IADIELPDAPRFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-------EEEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence 489999999888876 478899999876442 1222211 0124468999999999988
Q ss_pred cC--CCcEEE--EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcc-----
Q 004410 303 GE--DGTVRV--WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV----- 373 (755)
Q Consensus 303 s~--Dg~I~v--Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 373 (755)
.. +..|.+ +|+.+ +..+..... ....+.+.... ...+.++.....+...
T Consensus 142 n~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~---------------~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 142 LFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATH---------------YLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp ECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEE---------------ECCCCTTSCEEEECCSSCCCC
T ss_pred ccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEE---------------EEEcCCCCEEEEECccccccC
Confidence 64 457888 98877 344433211 10111111100 0111111111111111
Q ss_pred eeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe--EEEEEec-----------CCcEEEEEEeeC
Q 004410 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFSH-----------NNYVTSVAFNPV 439 (755)
Q Consensus 374 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~--~~~~~~h-----------~~~V~~i~fsp~ 439 (755)
..........+.-...+. . .+++ .++..+. +.|.+.|+.+.. .+..+.. ......++++|
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~- 273 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK- 273 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-
Confidence 000000000001112233 3 4444 6666666 999999986542 3332211 11112268999
Q ss_pred CCCEEEEEeC---------CCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEE-Ee-CCCcEEEEECCCCeEeeee
Q 004410 440 DDNYFISGSI---------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV-GT-MTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 440 d~~~l~sgs~---------Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~-gs-~dg~I~iwD~~~~~~~~~~ 508 (755)
+++.++.+.. ++.+.++|+.+.+++...........++|+|||+.+++ .. .++.|.++|+.+++.+..+
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence 7777765533 23566999999998876656667899999999986544 44 4899999999999987654
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.61 E-value=5.1e-06 Score=84.33 Aligned_cols=201 Identities=8% Similarity=0.007 Sum_probs=133.7
Q ss_pred EEEEEEecCCCEEEEEcC--CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 287 ILTMKFSLDGQYLASGGE--DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 287 V~~l~fspdg~~LaSgs~--Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
...|.|++|+.+.++.+. ++.|++.|+.+++.+..+....
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-------------------------------------- 64 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-------------------------------------- 64 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT--------------------------------------
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC--------------------------------------
Confidence 678999998766665553 5799999999998766543211
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecC-CcEEEEEEeeCCCCE
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHN-NYVTSVAFNPVDDNY 443 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~-~~V~~i~fsp~d~~~ 443 (755)
+ .....+++..+...++.-.++.|.++|..+.+.+..+... .. ...+++ +++.
T Consensus 65 ----------------------~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~-Dg~~ 118 (266)
T 2iwa_A 65 ----------------------S-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLAT-DGKI 118 (266)
T ss_dssp ----------------------T-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEE-CSSS
T ss_pred ----------------------C-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEE-CCCE
Confidence 0 1112344543224444557899999999999999998644 22 244666 6666
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEeccCC------cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE-ecc--
Q 004410 444 FISGSIDGKVRIWEVRRCQVVDYTDIR------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQG-- 514 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~~~~~~~~------~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~-~~~-- 514 (755)
++.+..+++|.++|..+.+.+...... ..+..+.|. +|...+....++.|.+.|+.+++.+..+... +..
T Consensus 119 l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~ 197 (266)
T 2iwa_A 119 LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL 197 (266)
T ss_dssp EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH
T ss_pred EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence 666667899999999998776432221 136677887 7754444446789999999999987765432 100
Q ss_pred --cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 515 --KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 515 --~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
.........++++|+|....+++++...+.+.+.++..
T Consensus 198 ~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 198 IDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp HHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred ccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 01112346799999995555666666788888887654
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.59 E-value=9.9e-07 Score=98.53 Aligned_cols=186 Identities=13% Similarity=0.053 Sum_probs=118.9
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC------------------------------------
Q 004410 408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG------------------------------------ 451 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg------------------------------------ 451 (755)
++.|.+.|..+.+.+..+.-.+....++++| +++++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 4578889999988888876444567788898 888888877553
Q ss_pred --cEEEEEcCC--CeE-EEeccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEe------eeeeEEecccccCC
Q 004410 452 --KVRIWEVRR--CQV-VDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLY------QQNQICLQGKKKLP 519 (755)
Q Consensus 452 --~V~iwdl~~--~~~-~~~~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~------~~~~~~~~~~~~~~ 519 (755)
.|.|.|.++ ++. +..........++.++|||++++++. .+.+|.+||+.+.+.. ....+.. ....
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~---~v~v 329 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA---EPEL 329 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE---CCBC
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE---EcCC
Confidence 366666666 333 33333344567899999999888765 5788999999965310 0000000 1123
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce--------eeEEEeeeccCCce-----EEEEEecCCCEEEEEeC-
Q 004410 520 GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV--------GKFKASAFRVAGSQ-----MFATFTSDGKHVVSPSE- 585 (755)
Q Consensus 520 ~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~--------~~~~~~~~~~~~~v-----~~l~fspdg~~L~sgs~- 585 (755)
+.....++|+| ++...++.-.|++|.+|++.... .........|-.+- ....++|||++|+++..
T Consensus 330 G~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 330 GLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp CSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred CCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 45788999999 66555566679999999977621 11111112222111 12245899999999864
Q ss_pred --CCc----------EEEEEcCCCC
Q 004410 586 --DSN----------IYIWNYSNQD 598 (755)
Q Consensus 586 --Dg~----------I~iWd~~~~~ 598 (755)
|.. -.++|+..++
T Consensus 409 skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 409 SKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CccccccCCCCCCCcceEEEcCCCc
Confidence 432 1889995544
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.57 E-value=0.00026 Score=84.19 Aligned_cols=326 Identities=11% Similarity=0.036 Sum_probs=187.0
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccce--eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQ--EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~--~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
+.++...++|.+.+ |+.++-+.+|+...... ..+.... ...-....|.+|...++|.+.+ |+.+ -|.+|+..+
T Consensus 217 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~ 291 (795)
T 4a2l_A 217 IQAILQQSPTRIWV-ATEGAGLFLINPKTKEI--KNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGT 291 (795)
T ss_dssp EEEEEEEETTEEEE-EEBSSCEEEEETTTTEE--EEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTT
T ss_pred eEEEEEcCCCCEEE-EECCCCeEEEeCCCCeE--EEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCC
Confidence 44556666666544 44444488888654321 1110000 0001235799999998887555 4445 488899877
Q ss_pred CeeeeeeecCCC-----CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec-----
Q 004410 316 HERLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ----- 385 (755)
Q Consensus 316 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 385 (755)
+....-...... ......+..+....+. .++...-+..++..... ...+.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW---------------igt~~~Gl~~~~~~~~~-----~~~~~~~~~~ 351 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW---------------LGTYFGGLNYYHPIRNR-----FKNIRNIPYK 351 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE---------------EEESSSCEEEECGGGGS-----SEEECCCTTS
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE---------------EEECCCCeEEeCCCccc-----ceEEcCCCCC
Confidence 654322111100 0011111111111111 12222223333322110 11111
Q ss_pred --CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe---------cCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 386 --GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 386 --gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~---------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
-....|.++...++|.|..|+.++-|..||..+++...... ....|.++...+ ++++|..|+.++-|.
T Consensus 352 ~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~ 430 (795)
T 4a2l_A 352 NSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLS 430 (795)
T ss_dssp SSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEE
T ss_pred CCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCcee
Confidence 12456999999888888889999889999998876554321 135799999887 777577788878899
Q ss_pred EEEcCCCeEEEecc-----CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 455 IWEVRRCQVVDYTD-----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 455 iwdl~~~~~~~~~~-----~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
+||..+++...+.. ....|.++...++|. |.+|+. +.+.+||..+++....... ..........|.++...
T Consensus 431 ~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 431 ILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRD 506 (795)
T ss_dssp EEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEEC
T ss_pred EEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEcccc--ccccccCCceEEEEEEC
Confidence 99999887765542 245789999888876 455555 5688999988765432110 00012234678888888
Q ss_pred CCCCCEEEEEECCCcEEEEECCcceeeEEE---eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVVGKFKA---SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~---~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+ ++. |.+++. +-|..|+..+....+.. ........|.++...++|.+.++.. . .|..||..+++
T Consensus 507 ~-~g~-lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 507 S-HKR-LWIGGE-EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQ 573 (795)
T ss_dssp T-TCC-EEEEES-SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTE
T ss_pred C-CCC-EEEEeC-CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCc
Confidence 7 555 444445 56788886553321110 0011345788999999998766554 3 68889876654
No 240
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.56 E-value=1e-05 Score=85.08 Aligned_cols=199 Identities=10% Similarity=0.029 Sum_probs=120.1
Q ss_pred CEEEEEEcC-CCeEEEEeCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEeC--------------
Q 004410 390 EVLDLSWSK-NGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSI-------------- 449 (755)
Q Consensus 390 ~V~~l~~s~-~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs~-------------- 449 (755)
.+..+++.+ ++.|+.+...+.|..+|..++....... .......+++.+.+++++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 477899997 6777777666668899977654322211 12357889988734566665432
Q ss_pred ---CCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEE-eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEE
Q 004410 450 ---DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525 (755)
Q Consensus 450 ---Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~ 525 (755)
++.|..||..+++...+...-.....|+++|+|+.|+++ +..+.|.+|++.+...-. ... +. ... . ...
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~-~~---~~~-g-P~g 233 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEV-LV---KIP-N-PGN 233 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEE-EE---ECS-S-EEE
T ss_pred cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cce-EE---eCC-C-CCC
Confidence 367889998877655433323445679999999977766 456889999988532100 000 00 011 2 678
Q ss_pred EEEcCCCCCEEEEEEC----------CCcEEEEECCcceeeEEEeeec-c-CCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 526 FQFSPSDPSKVIVTSA----------DSLVRVLCGENVVGKFKASAFR-V-AGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~----------Dg~I~iwd~~~~~~~~~~~~~~-~-~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+++.+ ++.+.++... .+.|..+|..... ........ . ...++.+++ .+++++++....+.|.+++
T Consensus 234 i~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~-~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 234 IKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNI-LEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp EEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCE-EEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred eEECC-CCCEEEEecCcccccccCCCccEEEEECCCCCE-EEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 99998 6666555544 4667888764321 11111111 1 234566666 4666666666788999999
Q ss_pred cCCCC
Q 004410 594 YSNQD 598 (755)
Q Consensus 594 ~~~~~ 598 (755)
+....
T Consensus 311 ~~~~~ 315 (322)
T 2fp8_A 311 YDKKG 315 (322)
T ss_dssp C----
T ss_pred ccccc
Confidence 86443
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.53 E-value=0.00048 Score=81.89 Aligned_cols=325 Identities=11% Similarity=0.059 Sum_probs=188.0
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
+.++...+++.+.+ |+.++.|..|+...... ..+. ...+...|.++...++|.+.+. +.++-|.+|+..+++
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~--~~~~----~~~~~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTF--EKVI----PILGTKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCE--EECC--------CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeE--EEec----CCCCCCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCe
Confidence 45566677776544 56554588888654331 1110 0113467999998888876554 444348889987765
Q ss_pred eeeeeecCCC------CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec--c-CccceEecCCC
Q 004410 318 RLDGFDVQDT------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL--L-EKPLHEFQGHS 388 (755)
Q Consensus 318 ~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~gh~ 388 (755)
... +..... ......+..+....+.... .. -+..++...... . ..+.....-..
T Consensus 247 ~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt---------------~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (795)
T 4a2l_A 247 IKN-YLHSPSNPKSISSNYIRSLAMDSQNRLWIGT---------------FN-DLNIYHEGTDSFASYSSNPVENGSLSQ 309 (795)
T ss_dssp EEE-ECCCTTCTTSCSCSBEEEEEECTTSCEEEEE---------------SS-CEEEEETTTTEEEEECCCTTSTTSCSS
T ss_pred EEE-eecCCCCccccCCCeEEEEEEcCCCCEEEEe---------------CC-hhheEcCCCCeEEEEecCCCCCCCCCC
Confidence 432 211100 0011111112222222111 11 122222211100 0 00000001123
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
..|.++...++|.|..|+.++-|..|+..++....... ....|.++...+ +++ |..|+.++-|..||..++
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQ 387 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTTC
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCC
Confidence 57999999999988899998999999876654322211 245699998876 555 555788878999999887
Q ss_pred eEEEecc---------CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 462 QVVDYTD---------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 462 ~~~~~~~---------~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+...+.. ....|.+++..++|..|.+|+.++-|.+||..+++..... ..........|.++...+ +
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~----~~~~~l~~~~v~~i~~d~-~ 462 (795)
T 4a2l_A 388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN----QRNSQLVNENVYAILPDG-E 462 (795)
T ss_dssp CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC----TTTSCCSCSCEEEEEECS-S
T ss_pred cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee----cCCCCcCCCeeEEEEECC-C
Confidence 7654431 2356899999888876888898888999999887654311 001113456788988877 5
Q ss_pred CCEEEEEECCCcEEEEECCcceeeEEEee----eccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKFKASA----FRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+. |.+|+. +-+.+|+..+......... .-....|.++...++|.+.+... +.|+.||..+++
T Consensus 463 g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 463 GN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp SC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred CC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 55 444555 4588888765432211100 01235688999999998776554 568889876553
No 242
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.53 E-value=9.2e-06 Score=81.55 Aligned_cols=193 Identities=10% Similarity=0.036 Sum_probs=130.1
Q ss_pred CCCCC--EEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 386 GHSSE--VLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 386 gh~~~--V~~l~~s~~~-~L~s~s~Dg--~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.|... ...|.|+ ++ .+.+.+.+| .|+++|+.+++.+..+.-........+.+.++.+++..-.++.+.+||..+
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence 45443 4789998 66 566666665 899999999999998875555544334442345555555689999999999
Q ss_pred CeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
.+++........- ..+++|++.|++...++.|.++|..+.+......+...+. .-..++.+.|. ++...+..-
T Consensus 117 ~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~---~~~~lNELe~~--~G~lyan~w 189 (262)
T 3nol_A 117 LRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE---ELPELNELEWV--DGEIFANVW 189 (262)
T ss_dssp CCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE---ECCCEEEEEEE--TTEEEEEET
T ss_pred CcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc---cccccceeEEE--CCEEEEEEc
Confidence 9888544433322 3344688888887778889999999998877655533221 12345667775 455444444
Q ss_pred CCCcEEEEECCcceeeEEEeeec----------cCCceEEEEEecCCCEEEEEeCC
Q 004410 541 ADSLVRVLCGENVVGKFKASAFR----------VAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~~----------~~~~v~~l~fspdg~~L~sgs~D 586 (755)
.++.|.+.|..+....-.....+ .....+.++|+|+++.|+..+..
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 68899999988765444433211 12356899999998888777653
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.51 E-value=0.00023 Score=72.29 Aligned_cols=253 Identities=6% Similarity=-0.069 Sum_probs=145.1
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEE-EEcCCCcEEEEEccCCeeeeeeecCC
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQD 326 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~La-Sgs~Dg~I~vWdv~~~~~~~~~~~~~ 326 (755)
.+|+.+.. +.|+.++....... .......+......+..++|++++..|. +-..++.|.+++........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~--~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~------ 72 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMK--KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT------ 72 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBC--GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE------
T ss_pred cEEEEEcC-CeEEEEEecCcccc--cccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE------
Confidence 34555543 47888887653321 1100011222234678999999765554 55557789998875432100
Q ss_pred CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-E
Q 004410 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-S 404 (755)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s 404 (755)
.+.........+++.+++ .|+ +
T Consensus 73 --------------------------------------------------------~~~~~~~~p~~ia~d~~~~~lyv~ 96 (267)
T 1npe_A 73 --------------------------------------------------------IIRQDLGSPEGIALDHLGRTIFWT 96 (267)
T ss_dssp --------------------------------------------------------EECTTCCCEEEEEEETTTTEEEEE
T ss_pred --------------------------------------------------------EEECCCCCccEEEEEecCCeEEEE
Confidence 001112356789999864 444 4
Q ss_pred EeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEcCCCeEEEec-cCCcceEEEEEc
Q 004410 405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVVDYT-DIREIVSAVCYC 479 (755)
Q Consensus 405 ~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~---Dg~V~iwdl~~~~~~~~~-~~~~~V~~v~~s 479 (755)
-...+.|.++++.......... .......++++| ++..|+.+.. .+.|..+++.......+. ........++++
T Consensus 97 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d 175 (267)
T 1npe_A 97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFD 175 (267)
T ss_dssp ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEE
T ss_pred ECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEc
Confidence 4556789999987544332332 225678999999 5555544443 368888888654322221 223467899999
Q ss_pred cCCCeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEE
Q 004410 480 PDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFK 558 (755)
Q Consensus 480 pdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~ 558 (755)
|++..|+++. ..+.|.++|+.+...... .. ......+++.. ++.++++....+.|.++|..+......
T Consensus 176 ~~~~~lyv~d~~~~~I~~~~~~g~~~~~~----~~-----~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 176 AFSSQLCWVDAGTHRAECLNPAQPGRRKV----LE-----GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDT 244 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEETTEEEEEEE----EE-----CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEecCCCceEEE----ec-----CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEE
Confidence 9887776655 457899999986543221 11 12234566553 334444444568999999876544333
Q ss_pred EeeeccCCceEEEEEecCCC
Q 004410 559 ASAFRVAGSQMFATFTSDGK 578 (755)
Q Consensus 559 ~~~~~~~~~v~~l~fspdg~ 578 (755)
.. .+.......+++.|++.
T Consensus 245 i~-~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 245 FH-PHKQTRLYGITIALSQC 263 (267)
T ss_dssp EC-CSSCCCCCCEEEECSCC
T ss_pred Ec-cccccccceeeecCccC
Confidence 31 12222356777877764
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.46 E-value=3.7e-05 Score=80.68 Aligned_cols=244 Identities=9% Similarity=0.027 Sum_probs=141.0
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccce--------------eeecccccEEEEEEec-CCCEEEEE
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQ--------------EFLAHEGSILTMKFSL-DGQYLASG 302 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~--------------~l~~H~~~V~~l~fsp-dg~~LaSg 302 (755)
...++++++|+++.++..++.|..|+...... ..+.... ......+.+..|++.+ +|+++++.
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 44589999999888888899999998664321 1110000 0011224578999998 66555443
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
. .+.|.+++..++.. ..+..
T Consensus 99 ~-~~~i~~~d~~~g~~-~~~~~---------------------------------------------------------- 118 (322)
T 2fp8_A 99 C-YYHLSVVGSEGGHA-TQLAT---------------------------------------------------------- 118 (322)
T ss_dssp T-TTEEEEECTTCEEC-EEEES----------------------------------------------------------
T ss_pred C-CCCEEEEeCCCCEE-EEecc----------------------------------------------------------
Confidence 3 44477777654321 11100
Q ss_pred Eec-CCCCCEEEEEEcC-CCeEEEEeC------------------CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC
Q 004410 383 EFQ-GHSSEVLDLSWSK-NGFLLSSSA------------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 383 ~~~-gh~~~V~~l~~s~-~~~L~s~s~------------------Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~ 442 (755)
... .......++++.+ +|.|..+.. ++.|..||..+++.............|+++| +++
T Consensus 119 ~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~ 197 (322)
T 2fp8_A 119 SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA-DSS 197 (322)
T ss_dssp EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECT-TSS
T ss_pred cCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECC-CCC
Confidence 000 0112356688888 774444332 3678889988776544433334456799999 887
Q ss_pred EEEEE-eCCCcEEEEEcCCC---eEEEeccCCcceEEEEEccCCCeEEEEeC----------CCcEEEEECCCCeEeeee
Q 004410 443 YFISG-SIDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 443 ~l~sg-s~Dg~V~iwdl~~~---~~~~~~~~~~~V~~v~~spdg~~la~gs~----------dg~I~iwD~~~~~~~~~~ 508 (755)
.|+.+ ...+.|.+|++... ....+..... ...+++.++|++.++... .+.|..+|.. ++.+..+
T Consensus 198 ~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~ 275 (322)
T 2fp8_A 198 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVI 275 (322)
T ss_dssp EEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEE
Confidence 55544 56689999998752 2222112233 788999999986555443 4678888875 4444322
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
.. .. ......++.+++. ++.++++....+.|.+++...
T Consensus 276 ~~--~~--g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 276 PL--PP--PFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EC--CT--TTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC--
T ss_pred EC--CC--CCccccceEEEEe--CCEEEEeecCCCceEEEeccc
Confidence 11 11 0112346666663 555555555678888887653
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.46 E-value=1.2e-05 Score=93.56 Aligned_cols=287 Identities=10% Similarity=0.093 Sum_probs=168.5
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeee---ccc-ccE-EEEEEecCCCEEEEEcCCCcEEEEEccCCeeeee
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL---AHE-GSI-LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG 321 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~---~H~-~~V-~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~ 321 (755)
+..+++++.++.|..+|..++..... ........ .+. ..+ ..+.+ ++..|+.++.|+.|..+|..+|+.+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWR-YDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEE-ECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceE-ECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 45666677788888888765543222 11110000 000 000 11222 355788888999999999999987765
Q ss_pred eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCe
Q 004410 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401 (755)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~ 401 (755)
+........ ......++. .++.
T Consensus 143 ~~~~~~~~~-----------------------------------------------------~~~~~~P~v-----~~~~ 164 (668)
T 1kv9_A 143 QQTTDPAKP-----------------------------------------------------YSITGAPRV-----VKGK 164 (668)
T ss_dssp EECSCTTSS-----------------------------------------------------CBCCSCCEE-----ETTE
T ss_pred eccCCCCCc-----------------------------------------------------ceecCCCEE-----ECCE
Confidence 543211000 000011111 1344
Q ss_pred EEEEe------CCCcEEEEeCCCCeEEEEEecC--C------------------------------cEEEEEEeeCCCCE
Q 004410 402 LLSSS------ADKTVRLWQVGIDRCLRVFSHN--N------------------------------YVTSVAFNPVDDNY 443 (755)
Q Consensus 402 L~s~s------~Dg~V~iWdl~s~~~~~~~~h~--~------------------------------~V~~i~fsp~d~~~ 443 (755)
++.+. .++.|+.+|..+++.+-.+... . ....+++.| ..++
T Consensus 165 v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~ 243 (668)
T 1kv9_A 165 VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDL 243 (668)
T ss_dssp EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTE
T ss_pred EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCE
Confidence 44433 2588999999999988777421 0 012467888 7788
Q ss_pred EEEEeCCCc-------------------EEEEEcCCCeEEE-ecc--CC-------cceEEEEEccCCC---eEEEEeCC
Q 004410 444 FISGSIDGK-------------------VRIWEVRRCQVVD-YTD--IR-------EIVSAVCYCPDGK---GGIVGTMT 491 (755)
Q Consensus 444 l~sgs~Dg~-------------------V~iwdl~~~~~~~-~~~--~~-------~~V~~v~~spdg~---~la~gs~d 491 (755)
++.++.++. |..+|..+++.+- +.. +. .......+..+|+ .+++++.+
T Consensus 244 vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~ 323 (668)
T 1kv9_A 244 LYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKN 323 (668)
T ss_dssp EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTT
T ss_pred EEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCC
Confidence 888877663 9999999999873 221 21 2233333444775 68889999
Q ss_pred CcEEEEECCCCeEeeeeeEE-------eccc---------ccCC------------CCCeEEEEEcCCCCCEEEEEE---
Q 004410 492 GNCRFYDIKDNQLYQQNQIC-------LQGK---------KKLP------------GKRITGFQFSPSDPSKVIVTS--- 540 (755)
Q Consensus 492 g~I~iwD~~~~~~~~~~~~~-------~~~~---------~~~~------------~~~I~~v~fsp~d~~~l~s~s--- 540 (755)
|.++++|..+++++...... +... .... ...-..++++| +..++++..
T Consensus 324 G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~~g~~yv~~~~~ 402 (668)
T 1kv9_A 324 GFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGLVYIPYQEV 402 (668)
T ss_dssp SEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEEC
T ss_pred CEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-CCCEEEEecccc
Confidence 99999999999987432210 0000 0000 00011256777 444444311
Q ss_pred ---------------------------------CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 541 ---------------------------------ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 541 ---------------------------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
.+|.|..||..+.....+... ........+...+.+|+.++.|+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg 479 (668)
T 1kv9_A 403 PGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAG 479 (668)
T ss_dssp CEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTS
T ss_pred ceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcc
Confidence 237799999988777666532 22333344556788999999999
Q ss_pred cEEEEEcCCCCc
Q 004410 588 NIYIWNYSNQDK 599 (755)
Q Consensus 588 ~I~iWd~~~~~~ 599 (755)
.|++||..+++.
T Consensus 480 ~l~a~d~~tG~~ 491 (668)
T 1kv9_A 480 QMHAYSADKGEA 491 (668)
T ss_dssp EEEEEETTTCCE
T ss_pred cchhhhhhcChh
Confidence 999999999984
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.42 E-value=8.1e-06 Score=91.24 Aligned_cols=186 Identities=16% Similarity=0.219 Sum_probs=128.3
Q ss_pred CC-eEE-EEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEE-e-eCCCCEEEEEe------------------CCCcEE
Q 004410 399 NG-FLL-SSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAF-N-PVDDNYFISGS------------------IDGKVR 454 (755)
Q Consensus 399 ~~-~L~-s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~f-s-p~d~~~l~sgs------------------~Dg~V~ 454 (755)
|| +|. +...+..|.+.|+.+.++.+.+. ....+..+++ . | ++.++++++ .++.|.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence 66 444 44456779999999999988554 4566889998 4 8 888888874 345799
Q ss_pred EEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCC--------------------------------------cEEE
Q 004410 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG--------------------------------------NCRF 496 (755)
Q Consensus 455 iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg--------------------------------------~I~i 496 (755)
+.|..+.+++...........++++|+|+++++.+.+. .|.+
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999988875443333556788999999999988653 2455
Q ss_pred EECCC--CeE-eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEECCccee----------eEEEeee
Q 004410 497 YDIKD--NQL-YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADSLVRVLCGENVVG----------KFKASAF 562 (755)
Q Consensus 497 wD~~~--~~~-~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~~~~~~----------~~~~~~~ 562 (755)
.|..+ ++. +..... .....++.++| |++++++++ .+.+|.++|..+... ..... .
T Consensus 259 ID~~~~~~~~~~~~Ipv---------g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~-v 327 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPI---------ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-P 327 (595)
T ss_dssp EECSGGGCCSSEEEEEE---------ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC-C
T ss_pred EeCcccCCceeEEEEec---------CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE-c
Confidence 55554 222 111111 23456789999 777666554 688999999886421 11111 2
Q ss_pred ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 563 RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 563 ~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
........++|+++|...++.-.|+.|.+||+.+
T Consensus 328 ~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 3345678899999994445666899999999987
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.41 E-value=1.7e-05 Score=79.70 Aligned_cols=188 Identities=11% Similarity=-0.018 Sum_probs=128.4
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccC
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI 469 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~ 469 (755)
-...|.|+.+..+.+.+.+|.|+++|+.+++.+..+ -..........+..+.+++..-.++.+.+||..+.+++.....
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 457889885337778888899999999999988877 5444444333332456666666789999999999998854443
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
...-..++ +|++.|+++..++.|+++|..+.+.+....+...+. .-..++.+.|. ++...+..-.++.|.+.|
T Consensus 135 ~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~---~v~~lNeLe~~--dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 135 SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ---PVELINELECA--NGVIYANIWHSSDVLEID 207 (268)
T ss_dssp SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE---ECCCEEEEEEE--TTEEEEEETTCSEEEEEC
T ss_pred CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc---ccccccccEEe--CCEEEEEECCCCeEEEEe
Confidence 33333444 688899888889999999999998887665543322 22355777776 455444444678999999
Q ss_pred CCcceeeEEEeeec-----------cCCceEEEEEecCCCEEEEEeC
Q 004410 550 GENVVGKFKASAFR-----------VAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 550 ~~~~~~~~~~~~~~-----------~~~~v~~l~fspdg~~L~sgs~ 585 (755)
..+....-.....+ .....+.++++|+++.|+..+.
T Consensus 208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 88765444332221 1235689999998766665553
No 248
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.41 E-value=8.1e-05 Score=74.02 Aligned_cols=190 Identities=9% Similarity=-0.036 Sum_probs=129.3
Q ss_pred CCEEEEEEcCCCeEEEEeCC--CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 389 SEVLDLSWSKNGFLLSSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~D--g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
.-...|.|+.+-.+.+.+.+ ..|+.+|+.+++.+..+.-..........+.++.+++..-.++.+.+||..+.+++..
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 45778999873355566665 4899999999999998875555444434442455566666789999999999998854
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
......-..+ .++++.|+++..++.|.++|..+.+.+....+...+. .-..++.+.+. ++...+..-.+..|.
T Consensus 101 i~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~---~~~~lNeLe~~--~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 101 FRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR---PLDNLNELEWV--NGELLANVWLTSRIA 173 (243)
T ss_dssp EECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE---ECCCEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc---ccccceeeEEe--CCEEEEEECCCCeEE
Confidence 4433333344 4678888888888999999999998877665543221 12355667765 455444444678899
Q ss_pred EEECCcceeeEEEeeec-----------cCCceEEEEEecCCCEEEEEeC
Q 004410 547 VLCGENVVGKFKASAFR-----------VAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~-----------~~~~v~~l~fspdg~~L~sgs~ 585 (755)
+.|..+....-.....+ .....+.++++|+++.|+..+.
T Consensus 174 vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 174 RIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99988765444432221 1235689999998887776664
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.41 E-value=2.5e-05 Score=78.41 Aligned_cols=187 Identities=13% Similarity=0.139 Sum_probs=120.9
Q ss_pred EEEEEEecCCCEEEEEcCCC--cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 287 ILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 287 V~~l~fspdg~~LaSgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
...|.|+ ++.+..+.+.+| .|+++|+.+++.+..+.....
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~------------------------------------- 86 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR------------------------------------- 86 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-------------------------------------
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-------------------------------------
Confidence 4788998 777777877776 899999999987665542110
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEE
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l 444 (755)
.---.++...+...+..-.++.+.+||..+.+.+..+.....= ..+++ ++..|
T Consensus 87 ------------------------~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~glt~-dg~~L 139 (262)
T 3nol_A 87 ------------------------YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGLTH-NDQYL 139 (262)
T ss_dssp ------------------------CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC--CCEEE-CSSCE
T ss_pred ------------------------cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc--eEEec-CCCEE
Confidence 0011233332223333446889999999999999999754432 33345 56666
Q ss_pred EEEeCCCcEEEEEcCCCeEEEeccC---C---cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE-eccc--
Q 004410 445 ISGSIDGKVRIWEVRRCQVVDYTDI---R---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQGK-- 515 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~~~~~~~~~---~---~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~-~~~~-- 515 (755)
+....+++|.++|..+.+++..... . ..+..+.|. +|+..+..-.++.|.+.|..+++....+... +...
T Consensus 140 ~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~ 218 (262)
T 3nol_A 140 IMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG 218 (262)
T ss_dssp EECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC
T ss_pred EEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc
Confidence 6666678899999999877643221 1 234456775 7765554546889999999999988765432 1110
Q ss_pred -ccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 516 -KKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 516 -~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
......-.++++|+| +.+.|++++
T Consensus 219 ~~~~~~~vlNGIA~dp-~~~~lfVTG 243 (262)
T 3nol_A 219 PLPSPIDVLNGIAWDK-EHHRLFVTG 243 (262)
T ss_dssp SCCSSCCCEEEEEEET-TTTEEEEEE
T ss_pred cccCcCCceEEEEEcC-CCCEEEEEC
Confidence 112234679999999 555555554
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.36 E-value=0.00017 Score=73.21 Aligned_cols=196 Identities=8% Similarity=-0.016 Sum_probs=124.5
Q ss_pred CEEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 390 EVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~-s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
.+..++|.+++ .|+ +-...+.|..+++........+. .......++++|..+.++++-...+.|.++++.......+
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 46789999865 444 44567899999998765444443 2357899999983345555556678999999876433222
Q ss_pred cc-CCcceEEEEEccCCCeEEEEeC---CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 467 TD-IREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 467 ~~-~~~~V~~v~~spdg~~la~gs~---dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
.. .......++++|++..|+++.. .+.|..+++....... +. ........+++++|+++.++++-...
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~-----~~---~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-----LA---QDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-----EE---CTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE-----EE---ECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 22 2246789999997666666554 3688888886533211 10 01234678999999434455555567
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
+.|.+++.......... . .......+++. +.+|+.+. ..+.|.++|..+++
T Consensus 189 ~~I~~~~~~g~~~~~~~--~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVL--E-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TEEEEEETTEEEEEEEE--E-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEecCCCceEEEe--c-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCC
Confidence 89999998753322222 1 22334566654 45555554 56889999998775
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.35 E-value=0.00034 Score=72.71 Aligned_cols=227 Identities=13% Similarity=0.084 Sum_probs=136.4
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
.....++|+++|+++++-..++.|..||..... ...+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~------------------------------------------ 68 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHA------------------------------------------ 68 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEE------------------------------------------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEE------------------------------------------
Confidence 356789999999988877778888888764321 1000
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEe--CCC-cEEEEeCCCCeEEEEEe--cCCcEEEEEEeeC
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS--ADK-TVRLWQVGIDRCLRVFS--HNNYVTSVAFNPV 439 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s--~Dg-~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~ 439 (755)
.....+..+++.+++.|+.+. .++ .|..+|..+++...... .......++..+
T Consensus 69 ---------------------~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~- 126 (306)
T 2p4o_A 69 ---------------------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS- 126 (306)
T ss_dssp ---------------------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-
T ss_pred ---------------------eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-
Confidence 011246788999998444443 222 47777877877654443 223345555554
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCe--EEEec---------cCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCC-CeEee
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQ--VVDYT---------DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKD-NQLYQ 506 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~--~~~~~---------~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~-~~~~~ 506 (755)
++..+++-..++.|.++|...+. +.... ..-.....+ +|+++.|+++. ..+.|..|++.. +.+..
T Consensus 127 ~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~ 204 (306)
T 2p4o_A 127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE 204 (306)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC
T ss_pred CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc
Confidence 45455555568899999987653 22111 111234555 88888776654 567899999875 33211
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe---cCCCEEEEE
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT---SDGKHVVSP 583 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs---pdg~~L~sg 583 (755)
...... ......+++.+ +++++++....+.|.+++..... .............++++|. ++++.|+.+
T Consensus 205 -~~~~~~------~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~G~~-~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 205 -PEIFVE------QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRST-TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp -CEEEEE------SCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCE-EEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred -cEEEec------cCCCCCeEECC-CCCEEEEeCCCCeEEEECCCCCE-EEEeecccccCCceEEEEecccCCCCEEEEE
Confidence 111000 12456688998 77777777778899999865221 1111111123568899998 898877776
Q ss_pred eCCC
Q 004410 584 SEDS 587 (755)
Q Consensus 584 s~Dg 587 (755)
+..+
T Consensus 276 ~~~~ 279 (306)
T 2p4o_A 276 TNGG 279 (306)
T ss_dssp ECTT
T ss_pred CCCC
Confidence 6543
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.33 E-value=6.2e-05 Score=75.51 Aligned_cols=187 Identities=10% Similarity=0.020 Sum_probs=123.9
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
-...|.|+ ++.+..+.+.+|.|+++|+.+++.+..+ ....
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-------------------------------------- 95 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-------------------------------------- 95 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT--------------------------------------
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC--------------------------------------
Confidence 34678887 4677888889999999999998865443 1110
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~ 445 (755)
..-..+++..+...+..-.++.+.+||..+.+.+..+.....-..++ + ++..|+
T Consensus 96 -----------------------~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~-Dg~~L~ 149 (268)
T 3nok_A 96 -----------------------IFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--Y-WNGKLV 149 (268)
T ss_dssp -----------------------CCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--E-ETTEEE
T ss_pred -----------------------cceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--c-CCCEEE
Confidence 00112344333333445578999999999999999997544434444 4 567777
Q ss_pred EEeCCCcEEEEEcCCCeEEEecc---CCc---ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE-eccc---
Q 004410 446 SGSIDGKVRIWEVRRCQVVDYTD---IRE---IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQGK--- 515 (755)
Q Consensus 446 sgs~Dg~V~iwdl~~~~~~~~~~---~~~---~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~-~~~~--- 515 (755)
.+..+++|.++|..+.+++.... ... .++.+.|. +|+..+..-.++.|.+.|..+++.+..+... +...
T Consensus 150 vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~ 228 (268)
T 3nok_A 150 RSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAG 228 (268)
T ss_dssp EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTT
T ss_pred EECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccc
Confidence 77778999999999988774222 111 34566776 7755544446889999999999988765542 1110
Q ss_pred -ccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 516 -KKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 516 -~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
......-.+++++.|....++++|
T Consensus 229 ~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 229 QVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccCcCCceEEEEEcCCCCEEEEeC
Confidence 112335679999999555555555
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.33 E-value=0.0002 Score=81.63 Aligned_cols=196 Identities=11% Similarity=-0.017 Sum_probs=119.7
Q ss_pred CCeEEEEeC------CCcEEEEeCCCCeEEEEEecCCcE---------------------------------------EE
Q 004410 399 NGFLLSSSA------DKTVRLWQVGIDRCLRVFSHNNYV---------------------------------------TS 433 (755)
Q Consensus 399 ~~~L~s~s~------Dg~V~iWdl~s~~~~~~~~h~~~V---------------------------------------~~ 433 (755)
++.++.++. ++.|+.+|..+++.+-.+...... ..
T Consensus 160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~ 239 (571)
T 2ad6_A 160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW 239 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence 345555544 789999999999988777532211 13
Q ss_pred EEEeeCCCCEEEEEeCC----------------CcEEEEEcCCCeEEEecc---CC-------cceEEEEEccCCC---e
Q 004410 434 VAFNPVDDNYFISGSID----------------GKVRIWEVRRCQVVDYTD---IR-------EIVSAVCYCPDGK---G 484 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~D----------------g~V~iwdl~~~~~~~~~~---~~-------~~V~~v~~spdg~---~ 484 (755)
+++.+ ....++.+..+ +.|..+|..+++.+-... +. ....-+...++|+ .
T Consensus 240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 56667 55666666532 359999999998873221 11 1111223335774 5
Q ss_pred EEEEeCCCcEEEEECCCCeEeeeeeEEecc----ccc-CCCCC--------------------------eEEEEEcCCCC
Q 004410 485 GIVGTMTGNCRFYDIKDNQLYQQNQICLQG----KKK-LPGKR--------------------------ITGFQFSPSDP 533 (755)
Q Consensus 485 la~gs~dg~I~iwD~~~~~~~~~~~~~~~~----~~~-~~~~~--------------------------I~~v~fsp~d~ 533 (755)
+++++.+|.++++|..+++++......... ... ....+ -..++++| +.
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~ 397 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-ES 397 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-CC
Confidence 778899999999999999887654321000 000 00001 12456777 44
Q ss_pred CEEEEEE-------------------------------------CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecC
Q 004410 534 SKVIVTS-------------------------------------ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 534 ~~l~s~s-------------------------------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspd 576 (755)
.++++.. .++.|..||..+.....+... ...+....+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~---~~~~~~~~~~t~ 474 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE---KFAAWGGTLYTK 474 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEET
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC---CCCccceeEEEC
Confidence 5555543 347888999887766655432 122222333445
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCc
Q 004410 577 GKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 577 g~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
+..|+.++.||.|+.||..+++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCCE
Confidence 67788899999999999999883
No 254
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.0013 Score=78.06 Aligned_cols=328 Identities=9% Similarity=0.001 Sum_probs=180.4
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCccccccccc---------ceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYT---------GQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~---------~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
.+.++...++|.+ ..|+..+-|.+++...... ..+.. .....-....|.+|...++|. |..|+.++-
T Consensus 259 ~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 259 YIFSIKQLKDNKL-WIATELNGIMILDLQQNQF--LLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CEEEEEECTTSEE-EEEESSSCEEEEETTCC-----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred eEEEEEECCCCCE-EEEeCCCCeEEECCCCCee--eeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 3555666677664 4455545577888654321 11100 000012346799999998886 555666677
Q ss_pred EEEEEccCCeeeeeeecC-------C-CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCc
Q 004410 308 VRVWKVIEHERLDGFDVQ-------D-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (755)
|..++..+..... +... . .......+..+....+. .++...-+..++........-
T Consensus 335 l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW---------------igt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 335 INFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGKLW---------------IGTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp EEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSCEE---------------EEEBSSCEEEEETTEEEEECC
T ss_pred EEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCCEE---------------EEeCCCcEEEEECCCCeEEEc
Confidence 8888876543221 1110 0 00001111111111111 111111222232221111000
Q ss_pred cceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 380 PLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 380 ~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
..........|.++...+++.|..|+.++.|..+|..+++...... ....|.++...+ ++. |..|+. +-|.+|
T Consensus 399 -~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~ 474 (781)
T 3v9f_A 399 -KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVI 474 (781)
T ss_dssp ------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEE
T ss_pred -cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEE
Confidence 0000123467999998888888888888889999988876543321 346799998876 555 555555 568899
Q ss_pred EcCCCeEEEeccC------CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 457 EVRRCQVVDYTDI------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 457 dl~~~~~~~~~~~------~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
|..+++....... ...|.++...++|. |.+|+..+-+..||..+++... +..........|.++...+
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~-----~~~~~~l~~~~i~~i~~d~ 548 (781)
T 3v9f_A 475 DLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRK-----FNQYEGFCSNTINQIYRSS 548 (781)
T ss_dssp ESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEE-----ECTTTTCSCSCEEEEEECT
T ss_pred eCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEE-----ccCCCCCCCCeeEEEEECC
Confidence 9887665433221 35789999988886 5566765558889988775432 1111223456788988877
Q ss_pred CCCCEEEEEECCCcEEEEECCcceeeEEEeeec-cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 531 SDPSKVIVTSADSLVRVLCGENVVGKFKASAFR-VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 531 ~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++. |.+++.+|.|..||..+..........+ ....|.++...++|.+.+++ .+ -|..|+..+..
T Consensus 549 -~g~-lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~-Gl~~~~~~~~~ 613 (781)
T 3v9f_A 549 -KGQ-MWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NT-GISCYITSKKC 613 (781)
T ss_dssp -TSC-EEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SS-CEEEEETTTTE
T ss_pred -CCC-EEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CC-ceEEEECCCCc
Confidence 555 4555556765888866533221111011 12357788888888876654 34 47777776543
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.28 E-value=0.00016 Score=71.86 Aligned_cols=189 Identities=11% Similarity=0.057 Sum_probs=121.1
Q ss_pred ccEEEEEEecCCCEEEEEcCCC--cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 285 GSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
.-...+.|++ +.+..+.+.+| .|+++|+.+++.+..+......
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~---------------------------------- 65 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY---------------------------------- 65 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC----------------------------------
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc----------------------------------
Confidence 3466899986 66777777754 8999999999877655432110
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~ 442 (755)
---.++...+......-.++.+.+||..+.+.+..+.....=..++ + ++.
T Consensus 66 ---------------------------fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~ 115 (243)
T 3mbr_X 66 ---------------------------FGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDS 115 (243)
T ss_dssp ---------------------------CEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSS
T ss_pred ---------------------------ceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCC
Confidence 0012333322233445578999999999999999997554434444 5 556
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEeccC---C---cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE-eccc
Q 004410 443 YFISGSIDGKVRIWEVRRCQVVDYTDI---R---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQGK 515 (755)
Q Consensus 443 ~l~sgs~Dg~V~iwdl~~~~~~~~~~~---~---~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~-~~~~ 515 (755)
.|+.+..+++|.++|..+.+++..... . ..++.+.+. +|+..+..-.+..|.+.|..+++.+..+... +...
T Consensus 116 ~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~ 194 (243)
T 3mbr_X 116 HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD 194 (243)
T ss_dssp CEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT
T ss_pred EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc
Confidence 666656688999999999877642222 1 234556654 6665544446889999999999988765432 1111
Q ss_pred c----cCCCCCeEEEEEcCCCCCEEEEE
Q 004410 516 K----KLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 516 ~----~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
. .....-.+++++.|...+++++|
T Consensus 195 ~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 195 ADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 1 12334679999999444444444
No 256
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.26 E-value=0.00027 Score=71.18 Aligned_cols=209 Identities=10% Similarity=0.132 Sum_probs=136.0
Q ss_pred EecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
.+.+-...+..|+|.|++ ++++...++.|...|+. ++.++.+. .....-.|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 344555689999999976 44557778899999998 88888774 335788899987 7777677667788999988
Q ss_pred CCCe---EEEec-------cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEec--ccccCCCCCeEEE
Q 004410 459 RRCQ---VVDYT-------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ--GKKKLPGKRITGF 526 (755)
Q Consensus 459 ~~~~---~~~~~-------~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~--~~~~~~~~~I~~v 526 (755)
.... .+... ........++|+|+++.|+++.......+|.+..........+... -........+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 6543 12111 1234468999999998888887766666666542100001111000 0011234567899
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeecc------CCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 527 QFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRV------AGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~------~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+++|..+.+++.......+.++|.............+. -.....++|.++|+..++ ++-+.++++.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 99997777777777788888999775433222211111 125578999999985554 77776766653
No 257
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.24 E-value=4.3e-05 Score=88.80 Aligned_cols=273 Identities=12% Similarity=0.036 Sum_probs=150.4
Q ss_pred ceeecC-CCCeeEEeeCCC-----------eEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CC
Q 004410 240 SATLKP-GDHELTLGQRMR-----------RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DG 306 (755)
Q Consensus 240 ~~~~sp-dg~~lasgs~dg-----------~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg 306 (755)
++++.| ++++++.|+.+. .+.+||........ +.. .-..+.....++++.++|++++.|+. +.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~--~~~--~~~~~~~~~~~~~~~~~g~lyv~GG~~~~ 265 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD--RTV--TVTKHDMFCPGISMDGNGQIVVTGGNDAK 265 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC--CEE--EECSCCCSSCEEEECTTSCEEEECSSSTT
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe--Ccc--cCCCCCCccccccCCCCCCEEEeCCCCCC
Confidence 467777 888888887542 57888877654321 111 01123333345677889999999984 45
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.+.+||..+.+....-. +..
T Consensus 266 ~v~~yd~~t~~W~~~~~------------------------------------------------------------~~~ 285 (656)
T 1k3i_A 266 KTSLYDSSSDSWIPGPD------------------------------------------------------------MQV 285 (656)
T ss_dssp CEEEEEGGGTEEEECCC------------------------------------------------------------CSS
T ss_pred ceEEecCcCCceeECCC------------------------------------------------------------CCc
Confidence 79999987664321100 000
Q ss_pred CCCCEEEEEEcCCC-eEEEEe-CC-----CcEEEEeCCCCeEEEEE-----ecCCcEEEEEEeeCCCCEEEEEeCCC---
Q 004410 387 HSSEVLDLSWSKNG-FLLSSS-AD-----KTVRLWQVGIDRCLRVF-----SHNNYVTSVAFNPVDDNYFISGSIDG--- 451 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s-~D-----g~V~iWdl~s~~~~~~~-----~h~~~V~~i~fsp~d~~~l~sgs~Dg--- 451 (755)
.. .-..++..+++ .++.|+ .+ ..+.+||..+++....- .....-....+.. ++..++.|+.+|
T Consensus 286 ~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~ 363 (656)
T 1k3i_A 286 AR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVF 363 (656)
T ss_dssp CC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEE
T ss_pred cc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEECCCCcEE
Confidence 00 01234455566 666666 34 57999999988765531 0000000011112 455556665554
Q ss_pred ------cEEEEEcCCCeEEEecc-C---------CcceEEEEEcc-CCCeEEEEeCCC-----------cEEEEECCCCe
Q 004410 452 ------KVRIWEVRRCQVVDYTD-I---------REIVSAVCYCP-DGKGGIVGTMTG-----------NCRFYDIKDNQ 503 (755)
Q Consensus 452 ------~V~iwdl~~~~~~~~~~-~---------~~~V~~v~~sp-dg~~la~gs~dg-----------~I~iwD~~~~~ 503 (755)
.+.+||..+........ . ...-.++.|.. +++.+++|+.++ .|.+||..++.
T Consensus 364 ~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 443 (656)
T 1k3i_A 364 QAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP 443 (656)
T ss_dssp ECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC
T ss_pred EecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC
Confidence 46788887765332111 1 11234555544 778888887543 57788887765
Q ss_pred EeeeeeEEecccccCCCCC-eEEEEEcCCCCCEEEEEECC-----------CcEEEEECCcceeeEEEeeeccCCceEEE
Q 004410 504 LYQQNQICLQGKKKLPGKR-ITGFQFSPSDPSKVIVTSAD-----------SLVRVLCGENVVGKFKASAFRVAGSQMFA 571 (755)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~-I~~v~fsp~d~~~l~s~s~D-----------g~I~iwd~~~~~~~~~~~~~~~~~~v~~l 571 (755)
-.... .. ..+..+ -.+++..| +++++++|+.+ ..+.+||..+..................+
T Consensus 444 W~~~~----~~--~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a 516 (656)
T 1k3i_A 444 NTVFA----SN--GLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSIS 516 (656)
T ss_dssp EEEEC----TT--CCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEE
T ss_pred eeEEc----cC--CCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHh
Confidence 43211 00 112222 23456667 78888888754 56889998764433222111111222345
Q ss_pred EEecCCCEEEEEeC
Q 004410 572 TFTSDGKHVVSPSE 585 (755)
Q Consensus 572 ~fspdg~~L~sgs~ 585 (755)
.+.+||+.++.|+.
T Consensus 517 ~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 517 LLLPDGRVFNGGGG 530 (656)
T ss_dssp EECTTSCEEEEECC
T ss_pred hcCCCcEEEecCCC
Confidence 56799999999985
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=0.0018 Score=76.68 Aligned_cols=201 Identities=10% Similarity=0.027 Sum_probs=130.4
Q ss_pred CCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 388 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
...|.++...+++.|..|+.++-|.+||..++...... .....|.++...+ ++.+ ..|+.++-|..+|..+++.
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNL-WFGTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCE-EEEETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCE-EEEeccCCEEEEcCCCCcE
Confidence 35699999888888888888888999998765433211 1346789998876 5554 4577777899999988877
Q ss_pred EEecc---CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 464 VDYTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 464 ~~~~~---~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
..+.. ....|.++...++|. |.+|+. +.|..||..+++...... ..........|.++...+ ++. |.+++
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~---~~~~~~~~~~i~~i~~d~-~g~-lWigt 512 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYD---TSNSQLLENFVRSIAQDS-EGR-FWIGT 512 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEEC---TTTSSCSCSCEEEEEECT-TCC-EEEEE
T ss_pred EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEeccc---CcccccccceeEEEEEcC-CCC-EEEEE
Confidence 65432 346789998888775 666666 568999988765432110 000112246788888876 544 55566
Q ss_pred CCCcEEEEECCcceeeEEEeee-ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 541 ADSLVRVLCGENVVGKFKASAF-RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~-~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.++-|..++............. -....|.++...++|.+.++.. +|-|..||..+++
T Consensus 513 ~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 513 FGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp SSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred cCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 6445777886543222111000 1234688899888998766554 6655888876654
No 259
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.23 E-value=0.00022 Score=81.34 Aligned_cols=188 Identities=12% Similarity=0.018 Sum_probs=114.3
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcE---------------------------------------EEEEEeeCCCCEEEEE
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHNNYV---------------------------------------TSVAFNPVDDNYFISG 447 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~~~V---------------------------------------~~i~fsp~d~~~l~sg 447 (755)
.++.|+.+|..+++.+-.+...... ..+++.+ ...+++.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 3789999999999998777532211 1345666 66777777
Q ss_pred eCC----------------CcEEEEEcCCCeEEE-ecc--CCc-------ceEEEEEc-cCC---CeEEEEeCCCcEEEE
Q 004410 448 SID----------------GKVRIWEVRRCQVVD-YTD--IRE-------IVSAVCYC-PDG---KGGIVGTMTGNCRFY 497 (755)
Q Consensus 448 s~D----------------g~V~iwdl~~~~~~~-~~~--~~~-------~V~~v~~s-pdg---~~la~gs~dg~I~iw 497 (755)
..+ +.|..+|..+++++- +.. +.. ...-+... .+| +.++.++.+|.++++
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEE
Confidence 655 379999999998872 221 111 11112222 567 467778999999999
Q ss_pred ECCCCeEeeeeeEEecc----ccc-CCC--------------------------CCeEEEEEcCCCCCEEEEEE------
Q 004410 498 DIKDNQLYQQNQICLQG----KKK-LPG--------------------------KRITGFQFSPSDPSKVIVTS------ 540 (755)
Q Consensus 498 D~~~~~~~~~~~~~~~~----~~~-~~~--------------------------~~I~~v~fsp~d~~~l~s~s------ 540 (755)
|..+++++......... ... ... ..-..++++| +..++++..
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~ 417 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICMD 417 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-CCCEEEEecccccee
Confidence 99999987654321000 000 000 0112345666 333433321
Q ss_pred ---------------------------------CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 541 ---------------------------------ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 541 ---------------------------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
.+|.|..||..+.+...+... ..+...-.+...+.+|+.++.|+
T Consensus 418 ~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagg~vf~gt~dg 494 (599)
T 1w6s_A 418 WEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDG 494 (599)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTS
T ss_pred eecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC---CCCccCcceEecCCEEEEECCCC
Confidence 346788888877666555421 11222112334677888899999
Q ss_pred cEEEEEcCCCCc
Q 004410 588 NIYIWNYSNQDK 599 (755)
Q Consensus 588 ~I~iWd~~~~~~ 599 (755)
.|+.||..+++.
T Consensus 495 ~l~A~D~~tG~~ 506 (599)
T 1w6s_A 495 YLKARDSDTGDL 506 (599)
T ss_dssp EEEEEETTTCCE
T ss_pred eEEEEECCCCCE
Confidence 999999999984
No 260
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.22 E-value=0.00011 Score=76.78 Aligned_cols=261 Identities=12% Similarity=0.003 Sum_probs=145.0
Q ss_pred cceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCee
Q 004410 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 239 ~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
.++...++|.+.+ ++.+ |..++.. + ..+..... +...+....+. +..|..++.++.|..+|.. ++.
T Consensus 63 ~~~~~~~~g~l~v-~t~~--l~~~d~~-g-~~~~~~~~------~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~ 128 (330)
T 3hxj_A 63 CRPSIGKDGTIYF-GSDK--VYAINPD-G-TEKWRFDT------KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE 128 (330)
T ss_dssp ECCEETTTTEECC-SSCE--EEEECCC-G-GGGGGSCC-----------CCEEEE--TTEEEEECTTSEEEEECTT-SCE
T ss_pred cceEEecCCcEEE-ecCc--EEEECCC-C-cEEEEEEC------CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE
Confidence 3456666666443 4444 7777742 2 22222111 11112223333 4567778888999999987 666
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
.............+.... ... .+.+..+..+..++.. . +.+..+..+...+.++...+
T Consensus 129 ~~~~~~~~~~~~~~~~~~--~g~---------------l~vgt~~~~l~~~d~~-g----~~~~~~~~~~~~~~~~~~d~ 186 (330)
T 3hxj_A 129 KWRFKTKKAIYATPIVSE--DGT---------------IYVGSNDNYLYAINPD-G----TEKWRFKTNDAITSAASIGK 186 (330)
T ss_dssp EEEEECSSCCCSCCEECT--TSC---------------EEEECTTSEEEEECTT-S----CEEEEEECSSCCCSCCEECT
T ss_pred EEEEcCCCceeeeeEEcC--CCE---------------EEEEcCCCEEEEECCC-C----CEeEEEecCCCceeeeEEcC
Confidence 555443322222111110 111 1222333445555443 1 12223333344566677777
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEE
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVC 477 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~ 477 (755)
++.|..++ +.|..+| .+++.+..+. ....+.++...+ ++ .+..++.++.|..+|...............+..+.
T Consensus 187 ~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~ 261 (330)
T 3hxj_A 187 DGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPV 261 (330)
T ss_dssp TCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCE
T ss_pred CCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECCCCCEeEEeeCCCCccccce
Confidence 77666666 8899999 6776665554 445677888876 55 45567778888888854444434443333344555
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 478 ~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
+.+++ .|.+++.+|.|..+|. +++...... .....+.++...+ ++ .|.+++.+|.+++.....
T Consensus 262 ~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~--------~~~~~~~~~~~d~-~g-~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 262 IGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE--------TGSWIIATPVIDE-NG-TIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp ECTTS-CEEEECTTCEEEEECT-TSCEEEEEE--------CSSCCCSCCEECT-TC-CEEEECTTSCEEEEEC--
T ss_pred EcCCC-eEEEecCCCCEEEECC-CCcEEEEEE--------cCCccccceEEcC-CC-EEEEEcCCCeEEEEeccc
Confidence 65555 6778888999999996 555543321 1233455566655 43 477789999999876543
No 261
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.08 E-value=0.004 Score=65.00 Aligned_cols=201 Identities=10% Similarity=-0.008 Sum_probs=125.4
Q ss_pred CCEEEEEEcCCC-eE-EEEeCCCcEEEEeCCC----CeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 389 SEVLDLSWSKNG-FL-LSSSADKTVRLWQVGI----DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s----~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
..+..++|.+.+ .| ++-...+.|..+++.. ......+. .-.....|++.+.+++++++-...+.|.+.++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 456789999754 44 4445668999999876 22222232 22456889998745566666677889999999876
Q ss_pred eEEEec-cCCcceEEEEEccCCCeEEEEeCC--CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 462 QVVDYT-DIREIVSAVCYCPDGKGGIVGTMT--GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 462 ~~~~~~-~~~~~V~~v~~spdg~~la~gs~d--g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
....+. ........++++|.+..|+.+... +.|..+++........ . ........++++.|.++.++++
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~----~----~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE----E----CSSCSCEEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE----E----ECCCCCceEEEEeccCCEEEEE
Confidence 544332 233567899999976666655543 6888888865432210 0 1123467899999955555556
Q ss_pred EECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 539 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
-...+.|..+|.....................+++. .+..+++-...+.|..++..+++
T Consensus 182 D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 566789999997643222222111123345677775 45556666677889999976665
No 262
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.07 E-value=0.0011 Score=76.91 Aligned_cols=180 Identities=10% Similarity=0.102 Sum_probs=112.0
Q ss_pred EEEEcCCC-eEEEEeCCC-------------------cEEEEeCCCCeEEEEEe---cC-------CcEEEEEEeeCCCC
Q 004410 393 DLSWSKNG-FLLSSSADK-------------------TVRLWQVGIDRCLRVFS---HN-------NYVTSVAFNPVDDN 442 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg-------------------~V~iWdl~s~~~~~~~~---h~-------~~V~~i~fsp~d~~ 442 (755)
.+++.++. .++.++.++ .|..+|+.+++.+-.+. |. ..+....+.. +++
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~ 312 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGK 312 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCc
Confidence 45677655 666666554 49999999999988875 22 2233333333 554
Q ss_pred ---EEEEEeCCCcEEEEEcCCCeEEEeccCC-------------cce------------------------EEEEEccCC
Q 004410 443 ---YFISGSIDGKVRIWEVRRCQVVDYTDIR-------------EIV------------------------SAVCYCPDG 482 (755)
Q Consensus 443 ---~l~sgs~Dg~V~iwdl~~~~~~~~~~~~-------------~~V------------------------~~v~~spdg 482 (755)
.++.++.+|.|+++|..+++++...... ..+ ..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 6889999999999999999887211100 000 126788876
Q ss_pred CeEEEEe------------------------------------CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEE
Q 004410 483 KGGIVGT------------------------------------MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGF 526 (755)
Q Consensus 483 ~~la~gs------------------------------------~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v 526 (755)
..+++.. .+|.|..||+.+++.+...... ......
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~---------~~~~~~ 463 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP---------THWNGG 463 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES---------SSCCCC
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC---------CCCcCc
Confidence 6665521 2378999999999987654321 112222
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEe
Q 004410 527 QFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPS 584 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs 584 (755)
.+.. .+.++++++.|+.+++||..+.......... ....-.-+.+..+|+ |++.++
T Consensus 464 ~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~-~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 464 TLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ-SGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETTEEEEEEEE
T ss_pred eeEe-CCCEEEEECCcccchhhhhhcChhheEecCC-CCcccCceEEEECCEEEEEEEe
Confidence 2333 5678889999999999999887666655322 111112234456776 455444
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.04 E-value=0.0021 Score=69.30 Aligned_cols=199 Identities=9% Similarity=-0.053 Sum_probs=128.4
Q ss_pred CCEEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 389 SEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
..+..++|.+.+ .| ++-...+.|+.+++........+. .......+++.+..++++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 457789999754 44 444567889999998776554443 234567889988556666776677889999987654332
Q ss_pred -eccCCcceEEEEEccCCCeEEEEeC-C-CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 466 -YTDIREIVSAVCYCPDGKGGIVGTM-T-GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 466 -~~~~~~~V~~v~~spdg~~la~gs~-d-g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
..........|+++|.+..|+.... . +.|..+++........ . .......++++++|.++.++++-...
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~----~----~~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII----A----DTHLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E----CSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE----E----ECCCCCeeeEEEeCCCCEEEEEECCC
Confidence 2233356789999997766665543 3 6788888875432211 0 11234578999998555566666667
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|..++.......... .........+++ ..+..+++-...+.|..++..+++
T Consensus 268 ~~I~~~d~dG~~~~~~~--~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 268 HVIERANLDGSHRKAVI--SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp TEEEEECTTSCSCEEEE--CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEeCCCCeeEEEE--ECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 88999987643222222 222345677777 445556666677889888866665
No 264
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.03 E-value=0.00059 Score=77.61 Aligned_cols=160 Identities=11% Similarity=0.063 Sum_probs=98.9
Q ss_pred cEEEEeCCCCeEEEEEecC---C-------cEEEEEEeeCCC---CEEEEEeCCCcEEEEEcCCCeEEEeccCCc-----
Q 004410 410 TVRLWQVGIDRCLRVFSHN---N-------YVTSVAFNPVDD---NYFISGSIDGKVRIWEVRRCQVVDYTDIRE----- 471 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~---~-------~V~~i~fsp~d~---~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~----- 471 (755)
.|..+|..+++.+-.++.. . ...-+...+ ++ ..++.++.+|.|.++|..+++++.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 5999999999988777521 1 111122223 56 367788999999999999998773221111
Q ss_pred ---------ce--------------------------EEEEEccCCCeEEEEe---------------------------
Q 004410 472 ---------IV--------------------------SAVCYCPDGKGGIVGT--------------------------- 489 (755)
Q Consensus 472 ---------~V--------------------------~~v~~spdg~~la~gs--------------------------- 489 (755)
++ ..++|+|+..+|++.+
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 11 2467888877777764
Q ss_pred ----------CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEE
Q 004410 490 ----------MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 490 ----------~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 559 (755)
.+|.|..||+.+++.+...... ..+....+.. .+..+++++.|+.|+.+|..+.....+.
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---------~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---------FAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEES---------SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCC---------CCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 2478999999999877654321 1111111122 4567888999999999999887776665
Q ss_pred eeeccCCceEEEEEecCCCEEE
Q 004410 560 SAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L~ 581 (755)
... ....-.-+.+..+|+.++
T Consensus 502 ~~~-~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 502 KMP-SGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp ECS-SCCCSCCEEEEETTEEEE
T ss_pred eCC-CCcEeeeEEEEECCEEEE
Confidence 322 111111233556776444
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.01 E-value=0.00072 Score=70.21 Aligned_cols=200 Identities=9% Similarity=-0.006 Sum_probs=121.6
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEEcCCCeEEE
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG--KVRIWEVRRCQVVD 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg--~V~iwdl~~~~~~~ 465 (755)
.....++|.+++ .+++-..++.|..||.... ....+.....+..+++.+ +++++++..... .|..+|..++++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 457789999988 4444457889999998754 444555566799999999 888766654432 47777877777654
Q ss_pred eccC--CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE-ec-ccccCCCCCeEEEEEcCCCCCE-EEEEE
Q 004410 466 YTDI--REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQ-GKKKLPGKRITGFQFSPSDPSK-VIVTS 540 (755)
Q Consensus 466 ~~~~--~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~-~~-~~~~~~~~~I~~v~fsp~d~~~-l~s~s 540 (755)
+... ......++..+++..+++-..+|.|+++|..++......... +. ..........+.+ +| ++.. +++-.
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d~ 186 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSNT 186 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEET
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEeC
Confidence 3322 223345555555544444446889999998765321100000 00 0000111234555 77 5554 45555
Q ss_pred CCCcEEEEECCc-ce-eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 541 ADSLVRVLCGEN-VV-GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 541 ~Dg~I~iwd~~~-~~-~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
..+.|.+++... .. ..... .........++++++|+++++....+.|.+++..
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~--~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEI--FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEE--EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCCEEEEEEeCCCCCCCccEE--EeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 678999999763 11 11111 1111345568899999988887778899999865
No 266
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.99 E-value=0.0012 Score=72.28 Aligned_cols=206 Identities=10% Similarity=0.074 Sum_probs=114.8
Q ss_pred CCEEEEEEcCCCeEEEEeCCC-----cEEEEeCCCCeE-EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 389 SEVLDLSWSKNGFLLSSSADK-----TVRLWQVGIDRC-LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg-----~V~iWdl~s~~~-~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
.....+++.+++.|+.+...+ .+...+...+.. ...+........++++|.++.++++-..++.|+.+|..++.
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~ 261 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT 261 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence 446788888888444444321 133333222111 11222334456788888566666666677889999998776
Q ss_pred E-EEec--cCCcceEEEEEccCCCeEEEEe-CCCcEEEEECC--CCeEeeeeeEEec-cc--------ccCCCCCeEEEE
Q 004410 463 V-VDYT--DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIK--DNQLYQQNQICLQ-GK--------KKLPGKRITGFQ 527 (755)
Q Consensus 463 ~-~~~~--~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~--~~~~~~~~~~~~~-~~--------~~~~~~~I~~v~ 527 (755)
. ..+. ........++|+|+|+.|+++. ..+.|+.++.. ++.+.....+.-. +. ..........++
T Consensus 262 ~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gia 341 (433)
T 4hw6_A 262 LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGI 341 (433)
T ss_dssp EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEE
T ss_pred EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEE
Confidence 5 2221 1222345799999999666655 46789998865 3322111011000 00 001123467788
Q ss_pred E---------cCCCCCEEEEEECCCcEEEEECCcceeeEEEeee--------c------cCCceEEEEEe-cCCCEEEEE
Q 004410 528 F---------SPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF--------R------VAGSQMFATFT-SDGKHVVSP 583 (755)
Q Consensus 528 f---------sp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~--------~------~~~~v~~l~fs-pdg~~L~sg 583 (755)
+ .+ ++.++++-...+.|+.++.......+..... + .-.....++++ ++|.++++=
T Consensus 342 v~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD 420 (433)
T 4hw6_A 342 FVKNEAYAGEED-EYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGD 420 (433)
T ss_dssp EEECGGGTTSSC-CEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred EEccccccccCC-CCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEe
Confidence 8 44 6666666667788999985432222221100 0 11236789999 666666666
Q ss_pred eCCCcEEEEEcC
Q 004410 584 SEDSNIYIWNYS 595 (755)
Q Consensus 584 s~Dg~I~iWd~~ 595 (755)
...+.|+.++++
T Consensus 421 ~~n~rIr~i~~e 432 (433)
T 4hw6_A 421 CDNHRVRKIAPE 432 (433)
T ss_dssp GGGTEEEEEEEC
T ss_pred CCCCEEEEEecC
Confidence 667778887764
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.99 E-value=0.0032 Score=66.73 Aligned_cols=199 Identities=9% Similarity=-0.051 Sum_probs=127.3
Q ss_pred CCEEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 389 SEVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~-s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
..+..++|.+.+ .|+ +-...+.|+.+++........+. .......+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 347889999754 444 44567889999988766444443 334567899988556666776777899999988654333
Q ss_pred e-ccCCcceEEEEEccCCCeEEEEe-CC-CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 466 Y-TDIREIVSAVCYCPDGKGGIVGT-MT-GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 466 ~-~~~~~~V~~v~~spdg~~la~gs-~d-g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+ ...-.....++++|.+..|+... .. +.|..+++........ ........++++++|.++.++++-...
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--------~~~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--------ADTHLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES--------CCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE--------EECCCCCcceEEEeCCCCEEEEEECCC
Confidence 2 23335678999999666655544 34 7788888875432211 011234578999998555555666667
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|..++.......... .........+++ ..+..+++-...+.|..++..+++
T Consensus 225 ~~I~~~~~dG~~~~~~~--~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 225 HVIERANLDGSHRKAVI--SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp TEEEEEETTSCSCEEEE--CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEeCCCCceEEEE--eCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 88999987643222222 222345567777 345555565567788888865554
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.99 E-value=0.00011 Score=85.30 Aligned_cols=206 Identities=10% Similarity=0.069 Sum_probs=115.6
Q ss_pred EEEEEcCCC-eEEEEe-CCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEe-CC-----CcEEEEEcCCC
Q 004410 392 LDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGS-ID-----GKVRIWEVRRC 461 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs-~D-----g~V~iwdl~~~ 461 (755)
.++++..++ .++.|+ .+..+.+||..+++....-. ....-.++++.+ ++++++.|+ .+ ..+.+||..+.
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCC
Confidence 346667777 666666 45689999998886654432 222223455566 889999988 44 56999999887
Q ss_pred eEEEecc-----CCcceEEEEEccCCCeEEEEeCCC---------cEEEEECCCCeEeeeeeEEeccc-ccCCCCCeEEE
Q 004410 462 QVVDYTD-----IREIVSAVCYCPDGKGGIVGTMTG---------NCRFYDIKDNQLYQQNQICLQGK-KKLPGKRITGF 526 (755)
Q Consensus 462 ~~~~~~~-----~~~~V~~v~~spdg~~la~gs~dg---------~I~iwD~~~~~~~~~~~~~~~~~-~~~~~~~I~~v 526 (755)
+-..... ....-....+..++..++.|+.+| .+..||..+..-........... .......-.++
T Consensus 325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 6554311 100000112234566666665554 46788888765432211100000 00011122445
Q ss_pred EEcCCCCCEEEEEECCC-----------cEEEEECCcceeeEEE-eeeccCCceEEEEEecCCCEEEEEeCC--------
Q 004410 527 QFSPSDPSKVIVTSADS-----------LVRVLCGENVVGKFKA-SAFRVAGSQMFATFTSDGKHVVSPSED-------- 586 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg-----------~I~iwd~~~~~~~~~~-~~~~~~~~v~~l~fspdg~~L~sgs~D-------- 586 (755)
.|...+++++++|+.++ .|.+||..+....... ........-.+++..|+|++++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 55444677888877532 5677776654332221 011122223455667899999999865
Q ss_pred ---CcEEEEEcCCCC
Q 004410 587 ---SNIYIWNYSNQD 598 (755)
Q Consensus 587 ---g~I~iWd~~~~~ 598 (755)
..+.+||..+.+
T Consensus 485 ~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDT 499 (656)
T ss_dssp SBCCCCEEEEGGGTE
T ss_pred CcccceEEEcCCCCc
Confidence 468999987765
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=0.0012 Score=72.27 Aligned_cols=207 Identities=11% Similarity=0.130 Sum_probs=113.2
Q ss_pred CCEEEEEEcCCC-eEEEEeCC-C----cEEEEeCCCCeE-EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 389 SEVLDLSWSKNG-FLLSSSAD-K----TVRLWQVGIDRC-LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~D-g----~V~iWdl~s~~~-~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
.....|+|++++ .|+.+... + .+.+.+...... ...+........++++|.++.++++-..++.|..++..++
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~ 258 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ 258 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence 456788999988 46665542 1 233344322111 1223223445678899856666777667889999999887
Q ss_pred eEEEec--cCCcceEEEEEccCCCeEEEE-eCCCcEEEEECCC--CeEeeeeeEEec-ccc--------cCCCCCeE-EE
Q 004410 462 QVVDYT--DIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKD--NQLYQQNQICLQ-GKK--------KLPGKRIT-GF 526 (755)
Q Consensus 462 ~~~~~~--~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~--~~~~~~~~~~~~-~~~--------~~~~~~I~-~v 526 (755)
....+. ........++|+|+|++|+++ ...+.|..++... +.+.....+.-. +.. ......-. .+
T Consensus 259 ~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv 338 (430)
T 3tc9_A 259 ETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGT 338 (430)
T ss_dssp EEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEE
T ss_pred cEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceE
Confidence 653322 222457889999999966555 4567899987663 332111111000 000 00011223 45
Q ss_pred EEcC-------CCCCEEEEEECCCcEEEEECCcceeeEEEee----ec----------cCCceEEEEEecC-CCEEEEEe
Q 004410 527 QFSP-------SDPSKVIVTSADSLVRVLCGENVVGKFKASA----FR----------VAGSQMFATFTSD-GKHVVSPS 584 (755)
Q Consensus 527 ~fsp-------~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----~~----------~~~~v~~l~fspd-g~~L~sgs 584 (755)
++.+ .++.++++-...+.|+.++.......+.... .+ .-.....++++++ |.++++-.
T Consensus 339 ~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 418 (430)
T 3tc9_A 339 FVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDR 418 (430)
T ss_dssp EEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred EEccccccccCCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEEC
Confidence 5532 1344555555667888888433222222210 00 0124688999995 55555555
Q ss_pred CCCcEEEEEcC
Q 004410 585 EDSNIYIWNYS 595 (755)
Q Consensus 585 ~Dg~I~iWd~~ 595 (755)
....|+.++++
T Consensus 419 ~n~rIr~i~~e 429 (430)
T 3tc9_A 419 ENRRIRKIGYE 429 (430)
T ss_dssp GGTEEEEEEEC
T ss_pred CCCeEEEEccC
Confidence 66778887754
No 270
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.94 E-value=0.0039 Score=70.97 Aligned_cols=146 Identities=11% Similarity=0.055 Sum_probs=86.7
Q ss_pred CcEEEEEcCCCeEEEec---cCC-------cceEEEEEc-cCCC---eEEEEeCCCcEEEEECCCCeEeeeeeEEec---
Q 004410 451 GKVRIWEVRRCQVVDYT---DIR-------EIVSAVCYC-PDGK---GGIVGTMTGNCRFYDIKDNQLYQQNQICLQ--- 513 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~---~~~-------~~V~~v~~s-pdg~---~la~gs~dg~I~iwD~~~~~~~~~~~~~~~--- 513 (755)
+.|..+|..+++.+-.. .+. ....-+... .+|+ .++.++.+|.++++|..+++++......-.
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 58999999999987322 121 111112222 4674 778899999999999999998765432100
Q ss_pred --------cc------ccC--------CC------------CCeEEEEEcCCCCCEEEEEE-------------------
Q 004410 514 --------GK------KKL--------PG------------KRITGFQFSPSDPSKVIVTS------------------- 540 (755)
Q Consensus 514 --------~~------~~~--------~~------------~~I~~v~fsp~d~~~l~s~s------------------- 540 (755)
+. ... .. ..-..++++|..+.+++...
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 00 000 00 00113566663333333221
Q ss_pred -------------CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 541 -------------ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 541 -------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.+|.|..||..+.+...+.... .++........+.+++.++.||.|+.||.++++.
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 2578889998887766655321 1222222233567888899999999999999983
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.87 E-value=0.012 Score=63.70 Aligned_cols=204 Identities=10% Similarity=-0.010 Sum_probs=129.6
Q ss_pred CCCCCEEEEEEcCCC-eEE-EEeCCCcEEEEeCCCC----eEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 386 GHSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGID----RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~-s~s~Dg~V~iWdl~s~----~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
.....+..|+|.+.+ .|. +-...+.|+.+++... .....+. .......|++.+..++++++-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 345678899999854 444 4456788999998752 2233333 44568899999856666677777889999999
Q ss_pred CCCeEEEec-cCCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 459 RRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 459 ~~~~~~~~~-~~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
.......+. ........|+++|.+..|+.... .+.|...++........ . .......++|++.|.++.+
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~----~----~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE----E----CSSCSCEEEEEEETTTTEE
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE----E----ECCCCceEEEEEEeCCCEE
Confidence 876554333 23455789999997666666553 36899999876433211 0 1122467899999855555
Q ss_pred EEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 536 VIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+++-...+.|..+|.....................+++. .+.++++-...+.|..+|..+++
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred EEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence 555566788999997653333222111223345567763 34455566667889999976665
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.86 E-value=0.028 Score=58.81 Aligned_cols=192 Identities=8% Similarity=0.045 Sum_probs=103.8
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc--CCCeEEE
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV--RRCQVVD 465 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl--~~~~~~~ 465 (755)
.+..+.+.+++.++.++.++.|..- ...++.-... .....+..+++.| ++.+++.+...+.++-+|- .+-+.+.
T Consensus 123 ~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW~~~~ 200 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAWEPHN 200 (327)
T ss_dssp CEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSSCEEEE
T ss_pred CeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCceeECC
Confidence 3556666666644445556655332 1222221222 3456789999998 7777766644333444443 2333332
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
......+..+.+.+++..+ +++.+|.+++.+...++....... . .......+..+.+.+ ++..+++ +.++.|
T Consensus 201 -~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~---~-~~~~~~~~~~v~~~~-~~~~~~~-g~~g~i 272 (327)
T 2xbg_A 201 -RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLS---P-LRRNSVGFLDLAYRT-PNEVWLA-GGAGAL 272 (327)
T ss_dssp -CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBC---T-TSSCCSCEEEEEESS-SSCEEEE-ESTTCE
T ss_pred -CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccC---C-cccCCcceEEEEecC-CCEEEEE-eCCCeE
Confidence 2345678899999988755 455678877765333433221110 0 001224588999987 5555555 456766
Q ss_pred EEEECCcceeeEEEeee--ccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 546 RVLCGENVVGKFKASAF--RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~--~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.+ ..... ........ .....+..+.|.+++ .++.++.+|.|+-++-
T Consensus 273 ~~-S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 273 LC-SQDGG-QTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EE-ESSTT-SSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EE-eCCCC-cccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 33 22211 22221111 123567788887555 4667778898776653
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.83 E-value=0.0034 Score=63.10 Aligned_cols=203 Identities=10% Similarity=0.101 Sum_probs=125.3
Q ss_pred eccCcceeecCCCCeeE-EeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 235 IDRHGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 235 ~~~~~~~~~spdg~~la-sgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
.+....++++|++..|+ +...++.|...+.. .+.+..+. +.+ ....-.|++.+++.++++.-.++.+.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~----l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIP----LDF-VKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEE----CSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEe----cCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 34566699999877555 57778888888876 22222221 122 245778888899988777667788888887
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.....+....... .++. ...+....-.
T Consensus 99 ~~~~~i~~~~~~~----------------------------------------------------~~~~-~~~~N~g~EG 125 (255)
T 3qqz_A 99 TPNSEVKILKKIK----------------------------------------------------IPLQ-ESPTNCGFEG 125 (255)
T ss_dssp CTTCCEEEEEEEE----------------------------------------------------CCCS-SCCCSSCCEE
T ss_pred CCCCeeeeeeeec----------------------------------------------------cccc-cccccCCcce
Confidence 6543211100000 0000 0123455788
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCC---CCeEEEEEe--------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVG---IDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~---s~~~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
|+|.+.+ .|+++.......||.+. ....+..+. +...+..++++|..+++++.......|.++|....
T Consensus 126 LA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 126 LAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE 205 (255)
T ss_dssp EEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred EEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence 9999988 66666655555555443 111222221 33457899999988888888888889999997755
Q ss_pred eEEEeccCC----------cceEEEEEccCCCeEEEEeCCCcEEEEEC
Q 004410 462 QVVDYTDIR----------EIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (755)
Q Consensus 462 ~~~~~~~~~----------~~V~~v~~spdg~~la~gs~dg~I~iwD~ 499 (755)
++...... .....|+|.++|+. .+.+..+.++.|.-
T Consensus 206 -~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 206 -VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTP 251 (255)
T ss_dssp -EEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC
T ss_pred -EEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEe
Confidence 44322222 25789999999974 44476666666643
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.83 E-value=0.00062 Score=80.26 Aligned_cols=146 Identities=11% Similarity=0.096 Sum_probs=82.3
Q ss_pred EEEEcCCC-eEEEEeCC-----CcEEEEeCCCCeE--EEEE--ecCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEcC
Q 004410 393 DLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRC--LRVF--SHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVR 459 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~D-----g~V~iWdl~s~~~--~~~~--~h~~~V~~i~fsp~d~~~l~sgs~---Dg~V~iwdl~ 459 (755)
.++|+||+ .|+....| ..|+++++.+++. ..++ ........+.|+| |+++|+..+. ...|+++|+.
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECC
Confidence 47899998 66666554 3688889887642 2333 2345677899999 8988876653 3468889998
Q ss_pred CC--eE--EEecc-CCcceEEEEEccCCCeEEEEeCC-----CcEEEEECCCC-eEeeeeeEEecccccCCCCCeEEEEE
Q 004410 460 RC--QV--VDYTD-IREIVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKDN-QLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 460 ~~--~~--~~~~~-~~~~V~~v~~spdg~~la~gs~d-----g~I~iwD~~~~-~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
++ +. ..+.. .......+.|+. |..|+..+.. ..|..+|+.+. .... . + +.. .....+..+.+
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~-~-l-i~~---~~~~~l~~~~~ 376 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSH-V-L-VDH---SEDVFMESIAV 376 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCC-E-E-ECC---CSSEEEEEEEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccccee-e-E-ECC---CCCcEEEEEEE
Confidence 75 33 33322 233444454433 6666554443 25777777642 1110 0 0 000 01113455555
Q ss_pred cCCCCCEEEEEECCCcEEEE
Q 004410 529 SPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 529 sp~d~~~l~s~s~Dg~I~iw 548 (755)
. ++.++++...++..+||
T Consensus 377 ~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 377 R--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp C--SSEEEEEEEETTEEEEE
T ss_pred E--CCEEEEEEEeCCEEEEE
Confidence 4 44566677777765544
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.80 E-value=0.0063 Score=63.44 Aligned_cols=181 Identities=7% Similarity=-0.089 Sum_probs=115.6
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC----CeEEEec-cCCcceEEEEEccC
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR----CQVVDYT-DIREIVSAVCYCPD 481 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~----~~~~~~~-~~~~~V~~v~~spd 481 (755)
....|+..|+.+.+....+.....+..++|++.++.++++-...+.|..+++.. .....+. ..-.....+++.+.
T Consensus 8 ~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp CBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 346789999998877666666677899999984455566666678999999876 2222222 22245678999875
Q ss_pred CCeEEE-EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-CcEEEEECCcceeeEEE
Q 004410 482 GKGGIV-GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-SLVRVLCGENVVGKFKA 559 (755)
Q Consensus 482 g~~la~-gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-g~I~iwd~~~~~~~~~~ 559 (755)
+..|+. -...+.|.++++........ . ........++++.|.++.++++.... +.|..++..........
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~----~----~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTL----F----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEE----E----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEE----E----ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence 555544 45678899999876543211 1 11234678999999444444444333 67888876543222221
Q ss_pred eeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCC
Q 004410 560 SAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQ 597 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~ 597 (755)
...-.....+++++++..|+.+. ..+.|..+|++..
T Consensus 160 --~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 160 --TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred --ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 12334678999999877776655 5578999999754
No 276
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.0091 Score=65.79 Aligned_cols=207 Identities=8% Similarity=0.090 Sum_probs=119.0
Q ss_pred CCEEEEEE-------cCCC-eEEEEeCCC-------cEEEEeCCC-C--------eEEEEEecCCcEEEEEEeeCCCCEE
Q 004410 389 SEVLDLSW-------SKNG-FLLSSSADK-------TVRLWQVGI-D--------RCLRVFSHNNYVTSVAFNPVDDNYF 444 (755)
Q Consensus 389 ~~V~~l~~-------s~~~-~L~s~s~Dg-------~V~iWdl~s-~--------~~~~~~~h~~~V~~i~fsp~d~~~l 444 (755)
.....|+| ++++ .|+.+...+ .|.+.+... + ..+..+. ....++++|.++.++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~---~p~giavdp~~g~LY 262 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK---QCNGATIHPINGELY 262 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES---CCCCEEECTTTCCEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC---CceEEEEcCCCCeEE
Confidence 34677888 8888 566665543 266665333 1 2222333 335678899666677
Q ss_pred EEEeCCCcEEEEEcC-------CCeE--------------EEeccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECC--
Q 004410 445 ISGSIDGKVRIWEVR-------RCQV--------------VDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIK-- 500 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~-------~~~~--------------~~~~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~-- 500 (755)
++-..++.|..+|+. ++.. +...........|+|+|+|+.|+++. ....|+.++..
T Consensus 263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~ 342 (496)
T 3kya_A 263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI 342 (496)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence 777788889999997 4443 11122234568999999999766654 56678886543
Q ss_pred CCeEeeeeeEEec-ccc--------cCCCCCeE-EEEEcC------CCCCEEEEEECCCcEEEEECCcceeeEEEeee--
Q 004410 501 DNQLYQQNQICLQ-GKK--------KLPGKRIT-GFQFSP------SDPSKVIVTSADSLVRVLCGENVVGKFKASAF-- 562 (755)
Q Consensus 501 ~~~~~~~~~~~~~-~~~--------~~~~~~I~-~v~fsp------~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-- 562 (755)
.+.+.....+.-. +.. ...-.... .+.... .++.++++-...+.|+.++.......+.+...
T Consensus 343 ~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~ 422 (496)
T 3kya_A 343 KKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGAST 422 (496)
T ss_dssp TTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTH
T ss_pred cceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEecccccc
Confidence 3332100000000 100 01112344 445531 25566666677889999985433333332100
Q ss_pred --------c----------cCCceEEEEEecC-CCEEEEEeCCCcEEEEEcCCCC
Q 004410 563 --------R----------VAGSQMFATFTSD-GKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 563 --------~----------~~~~v~~l~fspd-g~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+ .-.....++++++ |.++++=.....|+.+++....
T Consensus 423 ~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 423 SLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp HHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred cccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 0 1123578899986 6666666677789988887654
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.67 E-value=0.0067 Score=64.26 Aligned_cols=197 Identities=8% Similarity=-0.071 Sum_probs=125.9
Q ss_pred EEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec-cC
Q 004410 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DI 469 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~-~~ 469 (755)
..|.+..++..|+.+ ....|+..++..............+..++|++.++.++++-...+.|..+++.......+. ..
T Consensus 36 ~~C~~~~~~~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 36 RSCKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp SCEEESSSCCEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred CcccccccCceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 345555554445444 3456888898877766666666678999999845555666667788999999876544332 22
Q ss_pred CcceEEEEEccCCCeE-EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-CcEEE
Q 004410 470 REIVSAVCYCPDGKGG-IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-SLVRV 547 (755)
Q Consensus 470 ~~~V~~v~~spdg~~l-a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-g~I~i 547 (755)
......+++.+.+..| ++-...+.|.++++........ . ........++++.|.++.++++-... +.|..
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l----~----~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL----L----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----E----CTTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE----E----eCCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 2446788999855555 4445567899999876532211 1 11234578999999555555555555 78888
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
++.......... .........++|++++..|+.+. ..+.|..++++...
T Consensus 187 ~~~dG~~~~~~~--~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~ 236 (349)
T 3v64_C 187 SSMDGSGRRIIA--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH 236 (349)
T ss_dssp EETTSCSCEESC--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EeCCCCCcEEEE--ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence 876643222211 12234568999998777666554 45779999987543
No 278
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.65 E-value=0.01 Score=62.01 Aligned_cols=182 Identities=15% Similarity=0.229 Sum_probs=118.5
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCC----C---EEEEEe-C--CCcEEEEEc--CCCeEEEecc
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD----N---YFISGS-I--DGKVRIWEV--RRCQVVDYTD 468 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~----~---~l~sgs-~--Dg~V~iwdl--~~~~~~~~~~ 468 (755)
.++.....+.+.+||+ .++.+..+.. +.++.+..-| +- . ++++.. . +++|++|++ .++++.....
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 6666677889999999 8888887754 6778888776 21 1 233333 3 578999977 4455444322
Q ss_pred ------CC-cceEEEEE--ccC-CC-eEEEEeCCCcEEEEECC---CC----eEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 469 ------IR-EIVSAVCY--CPD-GK-GGIVGTMTGNCRFYDIK---DN----QLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 469 ------~~-~~V~~v~~--spd-g~-~la~gs~dg~I~iwD~~---~~----~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
.. ..+..+|+ +|. ++ ++++...+|.+..|++. .+ +++.++. -...+..++..+
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~---------lgsq~EgcvvDd 189 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK---------MNSQTEGMAADD 189 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE---------CSSCEEEEEEET
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec---------CCCCcceEEEcC
Confidence 11 45677888 774 44 68888889999999883 23 2222221 134788899988
Q ss_pred CCCCEEEEEECCCcEEEEECCcc---eeeEEEee-ec-cCCceEEEEE--ecCCC-EEEEEe-CCCcEEEEEcC
Q 004410 531 SDPSKVIVTSADSLVRVLCGENV---VGKFKASA-FR-VAGSQMFATF--TSDGK-HVVSPS-EDSNIYIWNYS 595 (755)
Q Consensus 531 ~d~~~l~s~s~Dg~I~iwd~~~~---~~~~~~~~-~~-~~~~v~~l~f--spdg~-~L~sgs-~Dg~I~iWd~~ 595 (755)
....|+++-.+.-|..++.... ........ .+ ....+..+++ .++|+ ||++++ .++.+.+||..
T Consensus 190 -~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 190 -EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp -TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred -CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 7789999999877777775421 11222111 12 2236777877 56666 677666 67799999986
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.61 E-value=0.013 Score=63.25 Aligned_cols=187 Identities=7% Similarity=-0.068 Sum_probs=120.4
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC----eEEE-eccCCcceEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----QVVD-YTDIREIVSA 475 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~----~~~~-~~~~~~~V~~ 475 (755)
+|+.+ ....|+..++..............+..|+|++.++.++++-...+.|+.+++... .... ..........
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 44444 3478999999887766666677789999999845555556566788999998752 1222 2223456788
Q ss_pred EEEccCCCeE-EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEECCcc
Q 004410 476 VCYCPDGKGG-IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-DSLVRVLCGENV 553 (755)
Q Consensus 476 v~~spdg~~l-a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~iwd~~~~ 553 (755)
+++.+.+..| ++-...+.|.+.++......... ........++++.|.++.++++-.. .+.|...++...
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~--------~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--------ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--------eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 9999854444 44456788999998865433211 1123457899999944444444323 378888887653
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCC
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
...... .........+++++++..|+.+. ..+.|..+|++...
T Consensus 236 ~~~~~~--~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 236 DIYSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp SCEEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred ccEEEE--ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 333222 22335678999998887777665 45789999987543
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.54 E-value=0.0073 Score=64.95 Aligned_cols=194 Identities=8% Similarity=-0.063 Sum_probs=123.8
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc-CCc
Q 004410 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-IRE 471 (755)
Q Consensus 393 ~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~-~~~ 471 (755)
+.+..+..+|+.+ ....|+..++..............+..++|++.++.++++-...+.|+.+++.......+.. ...
T Consensus 81 C~~~~~~~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 159 (386)
T 3v65_B 81 CKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 159 (386)
T ss_dssp EEECSSCCEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS
T ss_pred ECCccccceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC
Confidence 4444444444444 34678889988777666666666789999998455566666677889999998776544322 223
Q ss_pred ceEEEEEccCCCeEE-EEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-CcEEEEE
Q 004410 472 IVSAVCYCPDGKGGI-VGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-SLVRVLC 549 (755)
Q Consensus 472 ~V~~v~~spdg~~la-~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-g~I~iwd 549 (755)
....+++.+.+..|+ +-...+.|.++++........ + ........++++.|.++.++++-... +.|..++
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l----~----~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL----L----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE----E----CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe----e----cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 456788988655554 445567888888875432211 1 11234678999999555555554445 7788888
Q ss_pred CCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCC
Q 004410 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQ 597 (755)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~ 597 (755)
.......... .........++|+|++..|+.+. ..+.|..++++..
T Consensus 232 ~dG~~~~~~~--~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 232 MDGSGRRIIA--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp TTSCSCEEEE--CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CCCCCcEEEE--ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 7643333222 22334568999998777666554 4577999998754
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.52 E-value=0.022 Score=59.43 Aligned_cols=198 Identities=6% Similarity=-0.020 Sum_probs=126.5
Q ss_pred CEEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCeEE-EEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 390 EVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 390 ~V~~l~~s~~-~-~L~s~s~Dg~V~iWdl~s~~~~-~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
.+..+.|.+. + .+++-...+.|..+++...... ..+ ..-.....+++.+..++++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 4567899875 4 4445556788999998766321 122 2334567899987566666776677899999998654332
Q ss_pred e-ccCCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 466 Y-TDIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 466 ~-~~~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+ .........+++.|.+..|+.... .+.|..+++........ .. ......++++++|.++.++++-+..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~----~~----~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII----IN----SEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE----EC----SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE----EE----CCCCCccEEEEeccCCEEEEEECCC
Confidence 2 234456789999997666666553 57888888875432110 00 1124568999999555555666667
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|..++.......... .........+++. .+.++++-...+.|..++..+++
T Consensus 188 ~~I~~~d~dG~~~~~~~--~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVV--KGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TEEEEEETTSCSCEEEE--CSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEEe--cCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCC
Confidence 88999987643222222 2233455677775 33455555567889999987776
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.51 E-value=0.0027 Score=74.74 Aligned_cols=194 Identities=10% Similarity=0.045 Sum_probs=107.3
Q ss_pred CEEEEEEc-CCC-eEEEEe-CCC----cEEEEeCCCC-eEEEE-EecCCcEEEEEEeeCCCCEEEEEeCC-----CcEEE
Q 004410 390 EVLDLSWS-KNG-FLLSSS-ADK----TVRLWQVGID-RCLRV-FSHNNYVTSVAFNPVDDNYFISGSID-----GKVRI 455 (755)
Q Consensus 390 ~V~~l~~s-~~~-~L~s~s-~Dg----~V~iWdl~s~-~~~~~-~~h~~~V~~i~fsp~d~~~l~sgs~D-----g~V~i 455 (755)
.+...+|| ||| +|+.+. .+| +|+++|+.++ +.+.. +. .....+.|+| |++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGP-DHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECS-STTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEec-CCCEEEEEEECCCCCCCEEEE
Confidence 57789999 999 555443 333 4999999988 63211 11 1134678999 88777766665 36888
Q ss_pred EEcCCCe----EEEeccCCcceEEEEEccCCCeEEEEeCC---CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 456 WEVRRCQ----VVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 456 wdl~~~~----~~~~~~~~~~V~~v~~spdg~~la~gs~d---g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
+++.+++ ++...........+.|+|||++|+....+ ..|+++|+.++....... .+. .........+.|
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~-~l~---~~~~~~~~s~~~ 327 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE-IVR---PREKGVRYDVQM 327 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE-ESS---CCCTTCCEEEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE-Eee---cCCCCceEEEee
Confidence 8887753 22222223446788999999998876633 358888988652100000 011 112234455555
Q ss_pred cCCCCCEEEEEECC--C--cEEEEECCcc-eeeEEEeeeccCC--ceEEEEEecCCCEEEEEeCCCc--EEEEEc
Q 004410 529 SPSDPSKVIVTSAD--S--LVRVLCGENV-VGKFKASAFRVAG--SQMFATFTSDGKHVVSPSEDSN--IYIWNY 594 (755)
Q Consensus 529 sp~d~~~l~s~s~D--g--~I~iwd~~~~-~~~~~~~~~~~~~--~v~~l~fspdg~~L~sgs~Dg~--I~iWd~ 594 (755)
+. ++.+++.+..+ + .|.+++..+. ...... ..+.. .+..+.+. .+.++++...|+. |+++++
T Consensus 328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l--i~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL--VDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE--ECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE--ECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 43 44444454443 2 5666665532 111101 22222 34444444 2344566677776 455554
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.50 E-value=0.039 Score=64.79 Aligned_cols=205 Identities=10% Similarity=-0.019 Sum_probs=127.7
Q ss_pred ecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCC----eEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID----RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~----~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
+......+..|+|.+.+ .+++-...+.|+.+++... .....+. .......|++.+..++++++-...+.|.+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 33345667889998854 4445556688999988753 2233333 445678899998455677777778899999
Q ss_pred EcCCCeEEEec-cCCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 457 EVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 457 dl~~~~~~~~~-~~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
++.......+. ........|++.|.+..|+.... .+.|...++......... ........+|++.+..+
T Consensus 499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv--------~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--------TENIQWPNGITLDLLSG 570 (791)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE--------CSSCSCEEEEEEETTTT
T ss_pred eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE--------eCCCCCceEEEEecCCC
Confidence 99876654433 23345889999997666666553 267999998765432211 11235688999998555
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE-EeCCCcEEEEEcCCCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS-PSEDSNIYIWNYSNQD 598 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s-gs~Dg~I~iWd~~~~~ 598 (755)
.++++-...+.|..+++....................|++. +.+|+. -...+.|...|..+++
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCc
Confidence 55555556678999987654333332111122344566663 334444 4456778888877765
No 284
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.48 E-value=0.016 Score=60.02 Aligned_cols=202 Identities=8% Similarity=0.056 Sum_probs=127.0
Q ss_pred CCCEEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCeEEEE-Eec-------CCcEEEEEE---eeCCCCEEEEEeC-----
Q 004410 388 SSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRV-FSH-------NNYVTSVAF---NPVDDNYFISGSI----- 449 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~~~~~-~~h-------~~~V~~i~f---sp~d~~~l~sgs~----- 449 (755)
..---++.|.+.. .|+.++ ..++|..||...+..... +.. ...+..|.| .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 3344568998755 666666 789999999986654444 222 113689999 68 6777775432
Q ss_pred --------CCcEEEEEcC---CCeEEEeccC--------------CcceEEEEEccCCCeEEEEeCC-CcEEEEECCCCe
Q 004410 450 --------DGKVRIWEVR---RCQVVDYTDI--------------REIVSAVCYCPDGKGGIVGTMT-GNCRFYDIKDNQ 503 (755)
Q Consensus 450 --------Dg~V~iwdl~---~~~~~~~~~~--------------~~~V~~v~~spdg~~la~gs~d-g~I~iwD~~~~~ 503 (755)
+..|..||+. +++.+..... ......++..++|+..++++.. +.|..++.....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6779999999 6665532221 1247899999999999999988 888888887653
Q ss_pred EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee-eEEEeeec---cCCceEE-EEEecCCC
Q 004410 504 LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG-KFKASAFR---VAGSQMF-ATFTSDGK 578 (755)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~~---~~~~v~~-l~fspdg~ 578 (755)
.. .+. +...........++++++| ++..|++....+.+..+|+..... .+.....+ ....... +..-.+|+
T Consensus 171 ~~-~~~--~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 171 VS-TFA--WESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp EE-EEE--ECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred Ee-eee--ecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 32 111 1111122234578999999 788777776699999999885432 11110001 1112233 33335777
Q ss_pred E-EEEEeCCCcEEEEEc
Q 004410 579 H-VVSPSEDSNIYIWNY 594 (755)
Q Consensus 579 ~-L~sgs~Dg~I~iWd~ 594 (755)
. |++....+.+.+.+-
T Consensus 247 vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSW 263 (334)
T ss_dssp EEEEEEETTEEEEEECS
T ss_pred EEEEEcCCCCEEEEECC
Confidence 7 555556655555543
No 285
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.42 E-value=0.011 Score=67.38 Aligned_cols=60 Identities=20% Similarity=0.099 Sum_probs=42.8
Q ss_pred CCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 450 Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
+|.|..||+.+++.+-.......+..-.....+..+++|+.||.++.||.++++.+..++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 578999999999887333222222222222356788889999999999999999887654
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.42 E-value=0.084 Score=57.51 Aligned_cols=155 Identities=8% Similarity=0.004 Sum_probs=96.4
Q ss_pred CCEEEEEEcCC---CeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC---C-cEEEEEcCCC
Q 004410 389 SEVLDLSWSKN---GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---G-KVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~---~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D---g-~V~iwdl~~~ 461 (755)
.....|+|.++ +.|+.+...+.|+.+|+.++..............|++++ +++++++.... . .+...+....
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 34568999985 566666655899999998888777666666799999999 88855554321 1 1333333221
Q ss_pred eE-EEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC-EEEE
Q 004410 462 QV-VDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS-KVIV 538 (755)
Q Consensus 462 ~~-~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~-~l~s 538 (755)
.. ............++++| +|.+.++-..++.|+.+|..++....... ..+ ....-..++|+| +++ ++++
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~--~~~----~~~~~~~ia~dp-dG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV--MMD----TKGSNFHIVWHP-TGDWAYII 290 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE--ECS----CCSSCEEEEECT-TSSEEEEE
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe--ccC----CCCCcccEEEeC-CCCEEEEE
Confidence 11 00111223456688999 66555555567889999998776522111 011 112335799999 666 4555
Q ss_pred EECCCcEEEEECC
Q 004410 539 TSADSLVRVLCGE 551 (755)
Q Consensus 539 ~s~Dg~I~iwd~~ 551 (755)
-...+.|+.++..
T Consensus 291 d~~~~~I~~~~~d 303 (433)
T 4hw6_A 291 YNGKHCIYRVDYN 303 (433)
T ss_dssp ETTTTEEEEEEBC
T ss_pred eCCCCEEEEEeCC
Confidence 5567889998754
No 287
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.40 E-value=0.29 Score=59.99 Aligned_cols=315 Identities=12% Similarity=0.107 Sum_probs=154.4
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC------CCEEEEEcC-CCcEEEEEccCCeeee
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------GQYLASGGE-DGTVRVWKVIEHERLD 320 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd------g~~LaSgs~-Dg~I~vWdv~~~~~~~ 320 (755)
.+++.+. .+.+.++++.... +... .. ..-...|.|+++.|. ++++|.|.. |++|+|+++.+.+.+.
T Consensus 524 ~~vvva~-g~~l~~fel~~~~--L~~~---~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQE--LRQI---SH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETTE--EEEE---EE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CEEEEEE-CCEEEEEEeeCCc--eeee---cc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence 3555554 5667776654321 1111 11 112457999999863 379999996 9999999998766554
Q ss_pred eeecCC-CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEe--CCcceeccCccceEecCCCCCEEEEEEc
Q 004410 321 GFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL--PPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 321 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
...... ..+..+.+. ... .......+-.++.++.+ +.....+.... ..+.| ..++.-..+.
T Consensus 597 ~~~L~~~~~p~si~l~----------~~~----~~~~L~igl~dG~l~~~~~d~~tg~l~d~r-~~~LG-~~pv~L~~~~ 660 (1158)
T 3ei3_A 597 KEMLGGEIIPRSILMT----------TFE----SSHYLLCALGDGALFYFGLNIETGLLSDRK-KVTLG-TQPTVLRTFR 660 (1158)
T ss_dssp EEECCSSCCEEEEEEE----------EET----TEEEEEEEETTSEEEEEEECTTTCCEEEEE-EEECC-SSCCEEEEEE
T ss_pred EEECCCCCCCcEEEEE----------EeC----CCcEEEEEeCCCeEEEEEEcCCCCccccce-eEEcC-CCceEEEEEe
Confidence 433322 112222211 111 01222233333333222 22111111111 11222 2233333333
Q ss_pred CCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCC-CCEEEEEeCCCcEEEEEcCCCe--EEEeccCCcc
Q 004410 398 KNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREI 472 (755)
Q Consensus 398 ~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d-~~~l~sgs~Dg~V~iwdl~~~~--~~~~~~~~~~ 472 (755)
..+ .+++.+ ++...++--...-....+....--....|+... .+-++..+ ++.++|..+.+-+ .+........
T Consensus 661 ~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~T 738 (1158)
T 3ei3_A 661 SLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYES 738 (1158)
T ss_dssp SSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSE
T ss_pred eCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCC
Confidence 333 333333 344444433322111111122112233343311 23455443 5669998875432 2344556778
Q ss_pred eEEEEEccCCCeEEEEeCC-------------------------------------------------CcEEEEECCCCe
Q 004410 473 VSAVCYCPDGKGGIVGTMT-------------------------------------------------GNCRFYDIKDNQ 503 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~d-------------------------------------------------g~I~iwD~~~~~ 503 (755)
+..++++|+.+.+++++.+ +.|+++|..+.+
T Consensus 739 prri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~ 818 (1158)
T 3ei3_A 739 PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE 818 (1158)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCC
T ss_pred ceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCe
Confidence 9999999988877665532 124445544444
Q ss_pred EeeeeeEEecccccCCCCCeEEEE---EcCCCCCEEEEEE----------CCCcEEEEECCcceeeEEEeeeccCCceEE
Q 004410 504 LYQQNQICLQGKKKLPGKRITGFQ---FSPSDPSKVIVTS----------ADSLVRVLCGENVVGKFKASAFRVAGSQMF 570 (755)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~I~~v~---fsp~d~~~l~s~s----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~ 570 (755)
.+..+. + .....+.+++ |......++++|+ ..|.|.+|+..+...++... ....+.+++
T Consensus 819 ~i~~~~--l-----~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~-~~v~g~v~a 890 (1158)
T 3ei3_A 819 VLHAHQ--F-----LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE-KEVKGAVYS 890 (1158)
T ss_dssp EEEEEE--C-----CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-EEESSCEEE
T ss_pred EEEEEe--C-----CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-EEcCCcCEE
Confidence 332211 1 1223344444 3332356888886 35789999986443333322 345678888
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 571 ATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 571 l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++-- +|+ |++|- ...|++|++...+
T Consensus 891 l~~~-~g~-Lla~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 891 MVEF-NGK-LLASI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEE-TTE-EEEEE-TTEEEEEEECTTS
T ss_pred Eeee-CCE-EEEEc-CCEEEEEECCCCc
Confidence 7743 454 44443 3699999997654
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.34 E-value=0.055 Score=56.45 Aligned_cols=117 Identities=15% Similarity=0.273 Sum_probs=82.7
Q ss_pred CEEEEEE--cCC-C--eEEEEeCCCcEEEEeC-------CCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 390 EVLDLSW--SKN-G--FLLSSSADKTVRLWQV-------GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 390 ~V~~l~~--s~~-~--~L~s~s~Dg~V~iWdl-------~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
.+..+++ ++. + +++....+|.+..|++ .+.+.++.|.....+..+.+.+ ....|+.+-.+.-|..++
T Consensus 129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~d 207 (355)
T 3amr_A 129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYGRLYIAEEDEAIWKFS 207 (355)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEEE
T ss_pred CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCCeEEEecccceEEEEe
Confidence 3445665 553 4 6778888899999988 2446778888888899999998 788889999887777777
Q ss_pred cC-----CCeEEEecc---CCcceEEEEE--ccCCC-eEEEEe-CCCcEEEEECC-CCeEeee
Q 004410 458 VR-----RCQVVDYTD---IREIVSAVCY--CPDGK-GGIVGT-MTGNCRFYDIK-DNQLYQQ 507 (755)
Q Consensus 458 l~-----~~~~~~~~~---~~~~V~~v~~--spdg~-~la~gs-~dg~I~iwD~~-~~~~~~~ 507 (755)
.+ +.+++.... ....+..|++ .++++ +|++.+ .+.+..+||.. +.+.+..
T Consensus 208 a~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 208 AEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp CSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 55 345554432 2346788877 55666 566666 56789999997 5554443
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.27 E-value=0.0063 Score=66.46 Aligned_cols=158 Identities=11% Similarity=0.089 Sum_probs=102.0
Q ss_pred CcEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC-C----cEEEEECCCC
Q 004410 429 NYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-G----NCRFYDIKDN 502 (755)
Q Consensus 429 ~~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g----~I~iwD~~~~ 502 (755)
.....|+++|. ++. |+.+...+.|+.+|+..+.+..+.........|+|+++|+.|+++... + .+.+++.. +
T Consensus 137 ~~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp SCCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 34677899872 344 444444488999999988877666666678999999999977766642 2 24444433 2
Q ss_pred eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE
Q 004410 503 QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s 582 (755)
....... +. ......+++++|.++.++++-..++.|..++........... .........++|+|+|++|+.
T Consensus 215 ~~~~~~~--l~-----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~-~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITE--LT-----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT-IQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEE--EE-----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE-CSSSSCCEEEEECTTSSEEEE
T ss_pred ceeeeee--ec-----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE-cCCCCcceeEEEcCCCCEEEE
Confidence 2211101 11 123456788999666666666678899999987644322111 222245678999999995554
Q ss_pred E-eCCCcEEEEEcCC
Q 004410 583 P-SEDSNIYIWNYSN 596 (755)
Q Consensus 583 g-s~Dg~I~iWd~~~ 596 (755)
+ ...+.|+.++.+.
T Consensus 287 ~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EECCCCEEEEEeCCc
Confidence 4 5677899988764
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.27 E-value=0.032 Score=65.57 Aligned_cols=183 Identities=7% Similarity=-0.091 Sum_probs=118.0
Q ss_pred eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----EE-EeccCCcceEEEEEcc
Q 004410 406 SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCP 480 (755)
Q Consensus 406 s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~-~~~~~~~~V~~v~~sp 480 (755)
+....|+..++..............+..|+|++.++.++++-...+.|+.+++.... .. ...........|++.+
T Consensus 401 an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 401 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp ECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred ccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 345678888888777666666677889999998555566666667889999987531 12 2222344567899998
Q ss_pred CCCeEEEE-eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-CcEEEEECCcceeeEE
Q 004410 481 DGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-SLVRVLCGENVVGKFK 558 (755)
Q Consensus 481 dg~~la~g-s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-g~I~iwd~~~~~~~~~ 558 (755)
.+..|+.+ ...+.|.+.++......... ........+|++.|..+.++++-... +.|.+.++........
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~--------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLF--------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEE--------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEE--------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 77655554 45678999999865432211 11234578999999444444444333 6788888765433332
Q ss_pred EeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCC
Q 004410 559 ASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 559 ~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
. .........|++++.+..|+.+. ..+.|...+++...
T Consensus 553 v--~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 553 V--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp E--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred E--eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 2 22335678999998777776664 45679999987654
No 291
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.18 E-value=0.01 Score=67.60 Aligned_cols=198 Identities=14% Similarity=0.172 Sum_probs=123.3
Q ss_pred CCeEEEEeC-CCcEEEEeC-CCCeEEEEEecCCc------------EEEEEEeeCCCCE----EEEEeCCCcEEEEEcCC
Q 004410 399 NGFLLSSSA-DKTVRLWQV-GIDRCLRVFSHNNY------------VTSVAFNPVDDNY----FISGSIDGKVRIWEVRR 460 (755)
Q Consensus 399 ~~~L~s~s~-Dg~V~iWdl-~s~~~~~~~~h~~~------------V~~i~fsp~d~~~----l~sgs~Dg~V~iwdl~~ 460 (755)
++.++.++. ++.|.-+|. .+++.+-.+..... ...+++.| .+.. ++.++.|+.|..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEEEEECCC
Confidence 456777777 899999999 89999877753221 12345544 3344 78888999999999999
Q ss_pred CeEEEeccCCc-----ceEE-EEEccCCCeEEEEe------CCCcEEEEECCCCeEeeeeeEEecccc------------
Q 004410 461 CQVVDYTDIRE-----IVSA-VCYCPDGKGGIVGT------MTGNCRFYDIKDNQLYQQNQICLQGKK------------ 516 (755)
Q Consensus 461 ~~~~~~~~~~~-----~V~~-v~~spdg~~la~gs------~dg~I~iwD~~~~~~~~~~~~~~~~~~------------ 516 (755)
++++-...... .+++ ..+ .++ .+++++ .+|.|+-||..+++++...........
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 98873222211 1211 111 144 556655 379999999999998765442111000
Q ss_pred -----------------cCCCCCe-EEEEEcCCCCCEEEEEECC----------------CcEEEEECCcceeeEEEeee
Q 004410 517 -----------------KLPGKRI-TGFQFSPSDPSKVIVTSAD----------------SLVRVLCGENVVGKFKASAF 562 (755)
Q Consensus 517 -----------------~~~~~~I-~~v~fsp~d~~~l~s~s~D----------------g~I~iwd~~~~~~~~~~~~~ 562 (755)
......+ ..+++.+ ...+|+.+..+ +.|..+|..+..........
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred cccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 0000011 1345556 55677776655 37888999887777766544
Q ss_pred ccCC-------ceEEEEEe-cCC---CEEEEEeCCCcEEEEEcCCCCcc
Q 004410 563 RVAG-------SQMFATFT-SDG---KHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 563 ~~~~-------~v~~l~fs-pdg---~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
.|.. ...-+... .+| +.|+.++.+|.|+++|..+++.+
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 4321 11112332 578 56788999999999999999843
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.17 E-value=0.85 Score=55.87 Aligned_cols=176 Identities=11% Similarity=0.167 Sum_probs=110.1
Q ss_pred cEEEEeCCCCeEEEEEe--cCCcEEEEEEee---CCCCEEEEEe----------CCCcEEEEEcCCCeEE--EeccCCcc
Q 004410 410 TVRLWQVGIDRCLRVFS--HNNYVTSVAFNP---VDDNYFISGS----------IDGKVRIWEVRRCQVV--DYTDIREI 472 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp---~d~~~l~sgs----------~Dg~V~iwdl~~~~~~--~~~~~~~~ 472 (755)
.|++.|..+.+.+..+. ....+.+++... ....+|+.|+ ..|.|++|++..+++. .....++.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 47777877777766664 455566666433 1247888887 3478999999755443 45556788
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
+++++-- +| +|++|- ..+|++|++...+.+. .... .. ..-.+..+.. .++++++|..-..|.++....
T Consensus 888 v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~-~~~~----~~-~~i~~~~l~~---~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELR-TECN----HY-NNIMALYLKT---KGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEE-EEEE----EC-CCSCEEEEEE---ETTEEEEEESSBCEEEEEEET
T ss_pred CEEEeee-CC-EEEEEc-CCEEEEEECCCCceEE-EEee----cc-ccEEEEEEec---cCCEEEEEEhhheEEEEEEEc
Confidence 9988743 45 455543 5789999998765333 1110 00 0001223333 457888988887777765433
Q ss_pred ceeeEEEe-eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 553 VVGKFKAS-AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 553 ~~~~~~~~-~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
....+... .......++++.|-.+ ..++.+..+|+|.+...+...
T Consensus 956 ~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~ 1001 (1158)
T 3ei3_A 956 MEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAA 1001 (1158)
T ss_dssp TTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTC
T ss_pred CCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCC
Confidence 22222221 1335567888888755 478889999999999987643
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.14 E-value=0.014 Score=60.33 Aligned_cols=167 Identities=7% Similarity=0.055 Sum_probs=109.2
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe-ccC-------CcceEEEEE---ccCCCeEEEEeC-----
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDI-------REIVSAVCY---CPDGKGGIVGTM----- 490 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~-~~~-------~~~V~~v~~---spdg~~la~gs~----- 490 (755)
...+..++.|++.++.++++.-..++|..||...+..... ... ...+..|.| .|+++++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 4455678899984444444444799999999986654433 111 114689999 688777776442
Q ss_pred --------CCcEEEEECC---CCeEeeeeeEEecccccC-------CCCCeEEEEEcCCCCCEEEEEECC-CcEEEEECC
Q 004410 491 --------TGNCRFYDIK---DNQLYQQNQICLQGKKKL-------PGKRITGFQFSPSDPSKVIVTSAD-SLVRVLCGE 551 (755)
Q Consensus 491 --------dg~I~iwD~~---~~~~~~~~~~~~~~~~~~-------~~~~I~~v~fsp~d~~~l~s~s~D-g~I~iwd~~ 551 (755)
+..|..||+. +++.+.... +...... .......++..+ +++..++++.. +.|..++..
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~d--L~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVN--FEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEE--SHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTT
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEec--CccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCC
Confidence 5779999999 776654322 1111100 113478999999 88888888887 888777765
Q ss_pred cceee-EEEee--eccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 552 NVVGK-FKASA--FRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 552 ~~~~~-~~~~~--~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
..... +.... .......+.++++|+|+.|++...+|.|..+|+..
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 43211 11110 11122356899999999999887799999999884
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.10 E-value=0.033 Score=57.98 Aligned_cols=181 Identities=8% Similarity=-0.080 Sum_probs=112.1
Q ss_pred CCCcEEEEeCCCCe--EEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE--EEeccCCcceEEEEEccCC
Q 004410 407 ADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--VDYTDIREIVSAVCYCPDG 482 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~--~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~--~~~~~~~~~V~~v~~spdg 482 (755)
....|+..++.... ....+.....+..++|++.++.++++-...+.|..+++..... ......-.....+++.+.+
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 35678899987663 2223333345778999985566666666778899999877631 1111222346678998755
Q ss_pred CeE-EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE--CCCcEEEEECCcceeeEEE
Q 004410 483 KGG-IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS--ADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 483 ~~l-a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s--~Dg~I~iwd~~~~~~~~~~ 559 (755)
..| ++-...+.|.++++........ . ........++++.| .+..|+.+. ..+.|...+..........
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l----~----~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 161 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVL----F----WQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGSSRFIII 161 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEE----E----CSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEE----E----eCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence 544 4445567899999876432211 1 11234678999998 444444444 2577888876543222221
Q ss_pred eeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCC
Q 004410 560 SAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
...-.....++|++++..|+.+. ..+.|..++++...
T Consensus 162 --~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~ 199 (318)
T 3sov_A 162 --NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN 199 (318)
T ss_dssp --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred --ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc
Confidence 12234568999999777666654 56789999987543
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.07 E-value=0.077 Score=56.02 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=41.2
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC---CCEEEEEcC-C-----CcE
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE-D-----GTV 308 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd---g~~LaSgs~-D-----g~I 308 (755)
...++|.|+|+++++ ...|+|++++ ......+..+. .+.........|+|+|+ +.+|..+.. . +.|
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~---v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELS---VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecce---EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 345999999995554 5669999998 32211111111 11222456789999998 444444332 2 445
Q ss_pred EEEEcc
Q 004410 309 RVWKVI 314 (755)
Q Consensus 309 ~vWdv~ 314 (755)
..|+..
T Consensus 108 ~r~~~~ 113 (352)
T 2ism_A 108 VRLRHL 113 (352)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 555554
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.05 E-value=0.36 Score=49.53 Aligned_cols=263 Identities=8% Similarity=0.109 Sum_probs=163.7
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEee
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI 336 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~ 336 (755)
..|.|-|+........ +.+.+ + +.-.+|..+.||--. ..++.|+|+++...+..+..
T Consensus 49 ~~VvIiDl~n~~~~~R-----rpi~A-d----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~------------ 105 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIR-----RPISA-D----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM------------ 105 (365)
T ss_dssp EEEEEEETTSTTSCEE-----EECCC-S----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC------------
T ss_pred CEEEEEECCCCCCccc-----ccccc-c----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec------------
Confidence 3677888765443211 11222 1 233588888777655 57899999998876654432
Q ss_pred CCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeC
Q 004410 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416 (755)
Q Consensus 337 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl 416 (755)
..+|.-=.|-....|+..+ +..|+-|++
T Consensus 106 ---------------------------------------------------~e~VvfWkWis~~~L~lVT-~taVyHWs~ 133 (365)
T 2xzh_A 106 ---------------------------------------------------TDDVTFWKWISLNTVALVT-DNAVYHWSM 133 (365)
T ss_dssp ---------------------------------------------------SSCEEEEEECSSSEEEEEE-SSEEEEEES
T ss_pred ---------------------------------------------------CCccEEEEecCCCeEEEEc-CCcEEEEcc
Confidence 2345555666666444443 367999998
Q ss_pred CC-CeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEeC-------CCcEEEEEcCCCeEEEeccCCcceEEEEEccC--
Q 004410 417 GI-DRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSI-------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD-- 481 (755)
Q Consensus 417 ~s-~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs~-------Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spd-- 481 (755)
.. ..+.+.|. ....|.....++ +.++++..+. .|.+.+|..+.+....+.+|......+.+.-+
T Consensus 134 ~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~ 212 (365)
T 2xzh_A 134 EGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAE 212 (365)
T ss_dssp STTCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSS
T ss_pred cCCCCCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCC
Confidence 64 46667774 345677777787 7777665442 37889999998877777776655433333211
Q ss_pred -CCeEEEEeC---CCcEEEEECCCC---e-EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 482 -GKGGIVGTM---TGNCRFYDIKDN---Q-LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 482 -g~~la~gs~---dg~I~iwD~~~~---~-~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
.+.++.+.. .++++|.++... . ........+.-.......--.+++.++ .-..+..-+.-|.|++||+.+.
T Consensus 213 ~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTg 291 (365)
T 2xzh_A 213 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETG 291 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTC
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccC
Confidence 123333333 258999998432 1 111111112111223344566788888 7788999999999999999999
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...+.. .-....|...+-..+..=++.....|.|.--.++...
T Consensus 292 t~i~~n--rIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 292 TCIYMN--RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp CEEEEE--ECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred cEEEEe--ccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 888877 3345566655655555556666788888887777654
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.04 E-value=0.0013 Score=76.63 Aligned_cols=201 Identities=11% Similarity=-0.011 Sum_probs=120.4
Q ss_pred CCEEEEEEcCCC-eEEEE-eCCCcEEEEeCCC----CeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 389 SEVLDLSWSKNG-FLLSS-SADKTVRLWQVGI----DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~-s~Dg~V~iWdl~s----~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
..+..|+|.+.+ .|+.+ ...+.|+.+++.. ......+. .......|++.+..++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345678898755 55444 4567899999875 22222221 22345678888645666666667789999999876
Q ss_pred eEEEecc-CCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 462 QVVDYTD-IREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 462 ~~~~~~~-~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
....+.. .......|+++|.+..|+.... .+.|..+++........ . .......++|+|+|.++.++++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l----~----~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE----S----CSSCSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE----E----eCCCCCccEEEEeccCCEEEEE
Confidence 6554433 2345678899997665555443 26788888765332110 0 0112356789999966667777
Q ss_pred EECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 539 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
-...+.|.+++.....................+++..+ .++++....+.|..++..+++
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 77788999999764322222211111223345555443 444555566889999877665
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.00 E-value=0.75 Score=52.39 Aligned_cols=198 Identities=8% Similarity=-0.010 Sum_probs=117.8
Q ss_pred CCEEEEEEcCC-CeEE-EEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 389 SEVLDLSWSKN-GFLL-SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 389 ~~V~~l~~s~~-~~L~-s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
..+.+|+|.+. +.|+ +-...+.|+.+++........+. .-.....+++.+..++++++-+..+.|.+.++.......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 45778999884 4444 44457889999987654433333 335678899987566677776777899999988664332
Q ss_pred ec-cCCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 466 YT-DIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 466 ~~-~~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+. ..-.....|++.|....|..... .+.|...++........ . .......+++++.+..+.++++-+..
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l----~----~~~l~~P~GlalD~~~~~LY~aD~~~ 500 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVL----V----NTSLGWPNGLALDYDEGKIYWGDAKT 500 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E----CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEE----E----eCCCCCCeeeEEcccCCEEEEEECCC
Confidence 22 23456789999997445554442 35677777765432210 0 11235678999998455555555566
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
+.|..++.......... .........+++..+ +|+.+. ..+.|..-|..++.
T Consensus 501 ~~I~~~~~dG~~~~~~~--~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 501 DKIEVMNTDGTGRRVLV--EDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp TEEEEEESSSCCCEEEE--ECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred CEEEEEecCCCceEEEe--ccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 78888887543332221 111122234454433 444443 44567777766653
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.97 E-value=0.32 Score=51.23 Aligned_cols=193 Identities=15% Similarity=0.050 Sum_probs=94.7
Q ss_pred CCCEEEEEEcCC----CeEEEEeC-C-----CcEEEEeCCCCeE------EEEEec----CCcEEEEEEeeCCCCEEEEE
Q 004410 388 SSEVLDLSWSKN----GFLLSSSA-D-----KTVRLWQVGIDRC------LRVFSH----NNYVTSVAFNPVDDNYFISG 447 (755)
Q Consensus 388 ~~~V~~l~~s~~----~~L~s~s~-D-----g~V~iWdl~s~~~------~~~~~h----~~~V~~i~fsp~d~~~l~sg 447 (755)
......|+++|+ +.|..+.. . ..|..|+...+.. +..+.. ......|+|.| ++.++++.
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~ 152 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTT 152 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEEC
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEE
Confidence 345788999997 44443332 2 5677888764321 111221 12346899999 88777764
Q ss_pred eC-------------CCcEEEEEcCCC--------------eEEEeccCCcceEEEEEcc-CCCeEEEEeCCCcE-----
Q 004410 448 SI-------------DGKVRIWEVRRC--------------QVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNC----- 494 (755)
Q Consensus 448 s~-------------Dg~V~iwdl~~~--------------~~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I----- 494 (755)
+. .|+|.-++.... ..+...++ .....++|+| +|.++++-.....+
T Consensus 153 G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~ 231 (352)
T 2ism_A 153 GEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGH 231 (352)
T ss_dssp CCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CC
T ss_pred CCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCC
Confidence 32 245666665431 01111122 2356789999 55544443322221
Q ss_pred -EEEECCCCeEee----eeeEE----eccc-ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeE----EEe
Q 004410 495 -RFYDIKDNQLYQ----QNQIC----LQGK-KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF----KAS 560 (755)
Q Consensus 495 -~iwD~~~~~~~~----~~~~~----~~~~-~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~----~~~ 560 (755)
.|.-+..+...- ..... .... .-.+.....+++|. ++.++++....+.|...+.......+ ...
T Consensus 232 dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~ 309 (352)
T 2ism_A 232 DEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVET 309 (352)
T ss_dssp CEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchhe
Confidence 122222222100 00000 0000 00122345677773 55666655566777777655332110 111
Q ss_pred eeccCCceEEEEEecCCCEEEEEe
Q 004410 561 AFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 561 ~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
.......+..+++.|||.++++..
T Consensus 310 ~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 310 ALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEESSCCEEEEEECTTSCEEEEEC
T ss_pred ecccCCCeeEEEECCCCcEEEEEe
Confidence 122346788999999998776654
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.92 E-value=0.5 Score=49.03 Aligned_cols=189 Identities=6% Similarity=0.003 Sum_probs=99.9
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeCCCcEE-EEEcC-CCe
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVR-IWEVR-RCQ 462 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~-iwdl~-~~~ 462 (755)
..+.+|.+.+ +.++.++.++.|.. ....++.-.... +...+..|.+.+ ++..++.+ .+|.|. -.|-- +-+
T Consensus 80 ~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S~DgG~tW~ 155 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRTKDSGKNWQ 155 (327)
T ss_dssp CEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEESSTTSSEE
T ss_pred ccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEEcCCCCCCE
Confidence 3467777775 43333455565544 222233222221 234577888876 66666555 456543 22211 112
Q ss_pred EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEE-EEC--CCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF-YDI--KDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~i-wD~--~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.+ .......+..+.+.+++.+++++. .|.+.. .|- .+.+.+. ......+..+.+.+ ++.. ++.
T Consensus 156 ~~-~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~----------~~~~~~~~~~~~~~-~g~~-~~~ 221 (327)
T 2xbg_A 156 AL-VQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN----------RTTSRRLHNMGFTP-DGRL-WMI 221 (327)
T ss_dssp EE-ECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE----------CCSSSCEEEEEECT-TSCE-EEE
T ss_pred Ee-ecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC----------CCCCCccceeEECC-CCCE-EEE
Confidence 22 223455788999999988777664 455443 332 1222210 12345788899988 5554 455
Q ss_pred ECCCcEEEEECCcceeeEEEeeec---cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFR---VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~---~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.+|.+++.+.. .-..+...... ....+..+.+.+++..++++. +|.| ++..+.++
T Consensus 222 ~~~G~~~~s~~D-~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 222 VNGGKIAFSDPD-NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ 280 (327)
T ss_dssp ETTTEEEEEETT-EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS
T ss_pred eCCceEEEecCC-CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc
Confidence 667887776321 11122111111 223578899998887666654 6766 44455554
No 301
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.91 E-value=0.22 Score=52.47 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=40.5
Q ss_pred CCeEEEEEcCC------CCCEEEEEECCCcEEEEECCcceeeEEEeee-ccCCceEEEEEecCCCEEEEEe-CCCcE
Q 004410 521 KRITGFQFSPS------DPSKVIVTSADSLVRVLCGENVVGKFKASAF-RVAGSQMFATFTSDGKHVVSPS-EDSNI 589 (755)
Q Consensus 521 ~~I~~v~fsp~------d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-~~~~~v~~l~fspdg~~L~sgs-~Dg~I 589 (755)
.....+.|... ++.++++.-..+.|...+.......-..... .....+..+++.|||.++++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 35677888642 3556666666777877776543211111112 2235789999999998666543 34433
No 302
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.91 E-value=0.4 Score=54.72 Aligned_cols=197 Identities=9% Similarity=-0.053 Sum_probs=127.7
Q ss_pred CCEEEEEEcCCC-e-EEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 389 SEVLDLSWSKNG-F-LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~-L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
..+..|+|.+.+ . +++-..++.|+.+++........+. .......|++.+..++++++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 457789999865 4 4455567889999987655444443 224578899987556666776677889999997654332
Q ss_pred ec-cCCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 466 YT-DIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 466 ~~-~~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+. ..-.....|++.|....|+.... .+.|...++........ .. ......++++.+.++.++++-...
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l----~~-----~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL----VP-----NVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----EC-----SCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE----EC-----CCCCcceEEEccccCEEEEEECCC
Confidence 22 33355789999996556665553 56788888876543221 11 235678999999555555555667
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|..++.......... ........+++.. +..+++-...+.|...|..+++
T Consensus 188 ~~I~~~d~dG~~~~v~~---~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 188 NLIESSNMLGLNREVIA---DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TEEEEEETTSCSCEEEE---ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEee---ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 88999997654333222 2233456777754 4444454557889999877665
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.86 E-value=0.29 Score=51.61 Aligned_cols=65 Identities=15% Similarity=0.039 Sum_probs=39.7
Q ss_pred CcceEEEEEc-------cCCCeEEEEeCCCcEEEEECCCC-eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 470 REIVSAVCYC-------PDGKGGIVGTMTGNCRFYDIKDN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 470 ~~~V~~v~~s-------pdg~~la~gs~dg~I~iwD~~~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
......++|. .+|.++++....+.|..+++... .......+ +. .....+..+++.| ++.++++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-~~----~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF-FK----NVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE-CT----TTSCCEEEEEECT-TSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee-cc----CCCCCeeEEEECC-CCcEEEEEe
Confidence 3457788883 56766666666778888888753 22211111 11 1245789999999 676655553
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.79 E-value=1.1 Score=51.01 Aligned_cols=183 Identities=7% Similarity=-0.062 Sum_probs=110.5
Q ss_pred eCCCcEEEEeCCCCeEEE-EE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec-cCCcceEEEEEccC
Q 004410 406 SADKTVRLWQVGIDRCLR-VF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIREIVSAVCYCPD 481 (755)
Q Consensus 406 s~Dg~V~iWdl~s~~~~~-~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~-~~~~~V~~v~~spd 481 (755)
+..+.|+..++....... .+ ..-..+..|+|.+.++.++++-...+.|+.+++.......+. ..-.....+++.+.
T Consensus 323 ~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~ 402 (619)
T 3s94_A 323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV 402 (619)
T ss_dssp EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc
Confidence 344567777776543211 12 234567899999855555566556788999998764333222 22345678999875
Q ss_pred CCeEE-EEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEECCcceeeEEE
Q 004410 482 GKGGI-VGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-DSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 482 g~~la-~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~iwd~~~~~~~~~~ 559 (755)
+..|+ +-+..+.|.+.++.+..... +. ........++++.|..+.++++-.. ...|...++.........
T Consensus 403 ~~~lY~tD~~~~~I~v~~~~G~~~~~-----l~---~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~ 474 (619)
T 3s94_A 403 ARNLYWTDTGTDRIEVTRLNGTMRKI-----LI---SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV 474 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEE-----EE---CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred cCcEEEEeCCCCcEEEEeCCCCeEEE-----EE---ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE
Confidence 55554 44557789999987653211 11 1123567899999944554444322 356666665432222221
Q ss_pred eeeccCCceEEEEEecCCCEEEEEeC-CCcEEEEEcCCCC
Q 004410 560 SAFRVAGSQMFATFTSDGKHVVSPSE-DSNIYIWNYSNQD 598 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L~sgs~-Dg~I~iWd~~~~~ 598 (755)
...-.....+++++++..|+.+.. .+.|...+++...
T Consensus 475 --~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 475 --NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred --eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 223456788999987777776654 4679999986544
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.74 E-value=1.2 Score=50.78 Aligned_cols=340 Identities=7% Similarity=-0.080 Sum_probs=177.9
Q ss_pred CcceeecCCCCeeEEe-eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 238 ~~~~~~spdg~~lasg-s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
...+++++++..|..+ ...+.|...++......+ +...-.....|++.. +.+.+|-...+.|...|..++
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v--------~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREV--------IADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--------EEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCceEE--------eeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 3458999987766655 456789999986543321 222223345777764 455566666788998887777
Q ss_pred eeeeeeecCCCCCceeEEeeCCC--------------CceeEEee--------cCcc-ee-eeeeeeecCCceEEEe-CC
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHL--------------SQLIPIDV--------DKEK-ID-KTKSLRKSSDLTCVVL-PP 371 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~--------~~~~-~~-~~~~~~~~~~~~~~~~-~~ 371 (755)
+....+......+..+....... ..+..... .... +. ....... ....+++. ..
T Consensus 239 ~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~-~~~~Ll~s~~~ 317 (628)
T 4a0p_A 239 QNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA-PTTFLLFSQKS 317 (628)
T ss_dssp CSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEEC-CSSEEEEEETT
T ss_pred CceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCcc-ccceeeeeccc
Confidence 65544443322222222111100 00110000 0000 00 0000000 00000000 00
Q ss_pred cceecc--Cc--cceEec-CCCCCEEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCeEEEEEe-------cCCcEEEEEEe
Q 004410 372 KVFRLL--EK--PLHEFQ-GHSSEVLDLSWSKNG-FLLSS-SADKTVRLWQVGIDRCLRVFS-------HNNYVTSVAFN 437 (755)
Q Consensus 372 ~~~~~~--~~--~~~~~~-gh~~~V~~l~~s~~~-~L~s~-s~Dg~V~iWdl~s~~~~~~~~-------h~~~V~~i~fs 437 (755)
.+..+. .. +...+. .....+..|+|.+.+ .|+.+ ...+.|+.+++........+. ....+..|++.
T Consensus 318 ~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD 397 (628)
T 4a0p_A 318 AINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 397 (628)
T ss_dssp EEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEE
T ss_pred eEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEee
Confidence 111110 00 001111 123457889998855 44444 456788888876544333332 23468899999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeEEEe-ccCCcceEEEEEcc-CCCeEEEEeCCC--cEEEEECCCCeEeeeeeEEec
Q 004410 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIREIVSAVCYCP-DGKGGIVGTMTG--NCRFYDIKDNQLYQQNQICLQ 513 (755)
Q Consensus 438 p~d~~~l~sgs~Dg~V~iwdl~~~~~~~~-~~~~~~V~~v~~sp-dg~~la~gs~dg--~I~iwD~~~~~~~~~~~~~~~ 513 (755)
...++++++-+..+.|.+.++.......+ ........+|++.| .|..+++-.... .|...++........ .
T Consensus 398 ~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l----~- 472 (628)
T 4a0p_A 398 IYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVL----F- 472 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEE----E-
T ss_pred ccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEE----E-
Confidence 84566667777788999999876543322 22345689999999 555555533332 577777764432211 0
Q ss_pred ccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 514 GKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 514 ~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
.......+++++.+..++++++-+..+.|...+.......... .........+++.. +..+.+=.....|...|
T Consensus 473 ---~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~--~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~ 546 (628)
T 4a0p_A 473 ---FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLE--DSNILQPVGLTVFE-NWLYWIDKQQQMIEKID 546 (628)
T ss_dssp ---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CSSCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred ---eccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEE--cCCCCCcEEEEEEC-CEEEEEECCCCeEEEEE
Confidence 1123467899999844444455555688999987543322222 12234456777654 44444444566788888
Q ss_pred cCCCC
Q 004410 594 YSNQD 598 (755)
Q Consensus 594 ~~~~~ 598 (755)
..+++
T Consensus 547 k~~G~ 551 (628)
T 4a0p_A 547 MTGRE 551 (628)
T ss_dssp TTSSS
T ss_pred CcCCC
Confidence 77665
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.69 E-value=0.37 Score=50.76 Aligned_cols=192 Identities=12% Similarity=0.037 Sum_probs=97.0
Q ss_pred CCEEEEEEcCC----CeEEEEeC----C----CcEEEEeCCCC-------eEE-EEEe--cCCcEEEEEEeeCCCCEEEE
Q 004410 389 SEVLDLSWSKN----GFLLSSSA----D----KTVRLWQVGID-------RCL-RVFS--HNNYVTSVAFNPVDDNYFIS 446 (755)
Q Consensus 389 ~~V~~l~~s~~----~~L~s~s~----D----g~V~iWdl~s~-------~~~-~~~~--h~~~V~~i~fsp~d~~~l~s 446 (755)
.....|+++|+ +.|..+.. + ..|..|+.... +.+ ..+. .......|+|.| ++.++++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt 151 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYIT 151 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEE
Confidence 45778999987 44443332 3 56777776544 111 1122 122356799999 8887776
Q ss_pred EeC-------------CCcEEEEEcCCC---------eEEEeccCCcceEEEEEcc-CCCeEEEEeCCC---cEEEEECC
Q 004410 447 GSI-------------DGKVRIWEVRRC---------QVVDYTDIREIVSAVCYCP-DGKGGIVGTMTG---NCRFYDIK 500 (755)
Q Consensus 447 gs~-------------Dg~V~iwdl~~~---------~~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg---~I~iwD~~ 500 (755)
.+. .|+|.-++.... ..+...++. ....++|+| +|.++++-...+ .|.+..
T Consensus 152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~-- 228 (354)
T 3a9g_A 152 TGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL-- 228 (354)
T ss_dssp CCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--
T ss_pred ECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--
Confidence 432 245655555432 111122222 345789999 555444422221 133322
Q ss_pred CCeEee----eeeEE----eccccc--CCCCCeEEEEEcC------CCCCEEEEEECCCcEEEEECCcceee--EEEeee
Q 004410 501 DNQLYQ----QNQIC----LQGKKK--LPGKRITGFQFSP------SDPSKVIVTSADSLVRVLCGENVVGK--FKASAF 562 (755)
Q Consensus 501 ~~~~~~----~~~~~----~~~~~~--~~~~~I~~v~fsp------~d~~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~ 562 (755)
.+...- ..... ...... ........++|.. -++.++++....+.|...+....... ......
T Consensus 229 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~ 308 (354)
T 3a9g_A 229 KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK 308 (354)
T ss_dssp TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT
T ss_pred CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc
Confidence 221000 00000 000000 1234678888842 15566666666778888887642111 111111
Q ss_pred ccCCceEEEEEecCCCEEEEEe
Q 004410 563 RVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 563 ~~~~~v~~l~fspdg~~L~sgs 584 (755)
.....+..+++.|||.++++..
T Consensus 309 ~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 309 NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCeeEEEECCCCcEEEEEe
Confidence 2245788999999998776664
No 307
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.68 E-value=0.041 Score=60.58 Aligned_cols=161 Identities=12% Similarity=0.117 Sum_probs=102.5
Q ss_pred cEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCCeEEEeccCC----cceEEEEE-------ccCCCeEEEEeCCC-----
Q 004410 430 YVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVVDYTDIR----EIVSAVCY-------CPDGKGGIVGTMTG----- 492 (755)
Q Consensus 430 ~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~----~~V~~v~~-------spdg~~la~gs~dg----- 492 (755)
....|+|+|. .++++++-...+.|++.|+.++.+..+.... .....|+| +++|..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 4556666555578999999998887654332 35899999 99999777776654
Q ss_pred --cEEEEECCC-CeEee-e-eeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC-------ccee-----
Q 004410 493 --NCRFYDIKD-NQLYQ-Q-NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE-------NVVG----- 555 (755)
Q Consensus 493 --~I~iwD~~~-~~~~~-~-~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~-------~~~~----- 555 (755)
.|.+++... +.... . ... +. ......+++++|.++.++++-..++.|..+|.. +...
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~-v~-----~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQL-IA-----AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEE-EE-----EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CceEEEEecCCCCceeeccccee-ec-----cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 266666443 22210 0 000 11 012445778899667777777788889999986 2221
Q ss_pred -e----E-EEeeeccCCceEEEEEecCCCEEEEE-eCCCcEEEEEcCC
Q 004410 556 -K----F-KASAFRVAGSQMFATFTSDGKHVVSP-SEDSNIYIWNYSN 596 (755)
Q Consensus 556 -~----~-~~~~~~~~~~v~~l~fspdg~~L~sg-s~Dg~I~iWd~~~ 596 (755)
. + .............++|+|+|++|+.+ .....|+.++++.
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 0 1 11112233456899999999965544 4567788877643
No 308
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.67 E-value=0.85 Score=49.75 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=23.1
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
...+.|+|.|||+++++-...+.|++++..++
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 35679999999998887654456777765433
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.58 E-value=0.94 Score=47.56 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=39.2
Q ss_pred cceEEEEEcc-------CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 471 EIVSAVCYCP-------DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 471 ~~V~~v~~sp-------dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
..+..+.|.. +|.++++....+.|...++..++......+ + .....++..+++.| ++.++++.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~-~----~~~~~rp~~v~~~p-dG~lyv~t 340 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI-L----TDRGQRIRDVRTGP-DGYLYVLT 340 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE-S----GGGCCCEEEEEECT-TSCEEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc-c----cCCCCceeEEEECC-CCcEEEEE
Confidence 3566777753 466666666777888888876644322111 1 11235789999999 77655543
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.47 E-value=1.2 Score=47.52 Aligned_cols=263 Identities=8% Similarity=0.104 Sum_probs=164.8
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEee
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI 336 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~ 336 (755)
..|.|-|+........ +.+.+ -+.-.+|..+.||-=. ..++.|+|+++...+..+...
T Consensus 48 ~~vvIiDl~~~~~~~r-----rpi~A-----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~----------- 105 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIR-----RPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----------- 105 (494)
T ss_dssp CEEEEEETTSTTSCEE-----EECCC-----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-----------
T ss_pred CeEEEEECCCCCccee-----ccccc-----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-----------
Confidence 3677777765433211 11111 1234677777776654 678999999988766554322
Q ss_pred CCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeC
Q 004410 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416 (755)
Q Consensus 337 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl 416 (755)
.+|.-=.|-.+..|+..+ +..|+-|++
T Consensus 106 ----------------------------------------------------e~VvfWkWis~~~l~lVT-~taVyHWsi 132 (494)
T 1bpo_A 106 ----------------------------------------------------DDVTFWKWISLNTVALVT-DNAVYHWSM 132 (494)
T ss_dssp ----------------------------------------------------SCCCEEEEEETTEEEEEC-SSEEEEEES
T ss_pred ----------------------------------------------------CCceEEEecCCCeEEEEc-CCeeEEecc
Confidence 123334455444444333 467889998
Q ss_pred CC-CeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEe-------CCCcEEEEEcCCCeEEEeccCCcceEEEEEccC--
Q 004410 417 GI-DRCLRVFS-----HNNYVTSVAFNPVDDNYFISGS-------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD-- 481 (755)
Q Consensus 417 ~s-~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs-------~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spd-- 481 (755)
.. ..+.+.|. ....|.....++ +.++++..+ ..|.+.+|..+.+....+.+|......+.+.-+
T Consensus 133 ~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~ 211 (494)
T 1bpo_A 133 EGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAE 211 (494)
T ss_dssp SSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSS
T ss_pred cCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCC
Confidence 63 45666774 345677777787 777766543 247889999998877777777665544444221
Q ss_pred -CCeEEEEeCC---CcEEEEECCCC----eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 482 -GKGGIVGTMT---GNCRFYDIKDN----QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 482 -g~~la~gs~d---g~I~iwD~~~~----~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
.+.++.+... +.++|.++... .........+.-.......--.+++.++ ....+..-+.-|.|++||+.+.
T Consensus 212 ~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTg 290 (494)
T 1bpo_A 212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETG 290 (494)
T ss_dssp EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTC
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccc
Confidence 1234444433 78999998543 1111111112111223344566788888 7788999999999999999999
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...+... -....|...+-.....=++.....|.|.--.++...
T Consensus 291 t~i~~nr--Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 291 TCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp CEEEEEE--CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred eeeeeec--ccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 8888873 345566666666666667777788888888887665
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.37 E-value=0.9 Score=47.69 Aligned_cols=187 Identities=12% Similarity=0.120 Sum_probs=107.8
Q ss_pred EEEEEEcCCCeEEEEe-------------CCCcEEEEeCCC--CeEEEEEe--------cCCcEEEEEEeeC-CCC--EE
Q 004410 391 VLDLSWSKNGFLLSSS-------------ADKTVRLWQVGI--DRCLRVFS--------HNNYVTSVAFNPV-DDN--YF 444 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s-------------~Dg~V~iWdl~s--~~~~~~~~--------h~~~V~~i~fsp~-d~~--~l 444 (755)
.-+++..++|.+++++ .+|.|.++|..+ .+. ..+. ..-....|.+.+. ++. ++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 4466678888555554 689999999873 232 2222 1236778888662 232 44
Q ss_pred EEEeC--CCcEEEEEcCC--CeEEE---ecc-CCcceEEEEEccCCCeEEEEeC-----------------CCcEEEEEC
Q 004410 445 ISGSI--DGKVRIWEVRR--CQVVD---YTD-IREIVSAVCYCPDGKGGIVGTM-----------------TGNCRFYDI 499 (755)
Q Consensus 445 ~sgs~--Dg~V~iwdl~~--~~~~~---~~~-~~~~V~~v~~spdg~~la~gs~-----------------dg~I~iwD~ 499 (755)
++-.. +..|.+|++.. +.... ..+ .-...+.+.+.++|...++... .|.|+.||.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 45777877654 33221 211 1235789999999987666541 244555555
Q ss_pred CCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE-ECCCcEEEEECCcc--eeeEEEeeeccCCceEEEEEec-
Q 004410 500 KDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT-SADSLVRVLCGENV--VGKFKASAFRVAGSQMFATFTS- 575 (755)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~-s~Dg~I~iwd~~~~--~~~~~~~~~~~~~~v~~l~fsp- 575 (755)
..-+.+ ..+ -..-++++|+| |++.++++ +..+.|..|+.... ...... ....+..-.+++.+
T Consensus 211 ~~~~~~------~~~-----l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~--~~~~g~PDGi~vD~e 276 (355)
T 3sre_A 211 NDVRVV------AEG-----FDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRV--LSFDTLVDNISVDPV 276 (355)
T ss_dssp TCCEEE------EEE-----ESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEE--EECSSEEEEEEECTT
T ss_pred CeEEEe------ecC-----CcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEE--EeCCCCCceEEEeCC
Confidence 321111 111 13568999999 66655554 56789999997531 111111 22345667888998
Q ss_pred CCCEEEEEeCC-CcEEEE
Q 004410 576 DGKHVVSPSED-SNIYIW 592 (755)
Q Consensus 576 dg~~L~sgs~D-g~I~iW 592 (755)
+|.+.+++..+ +.|..|
T Consensus 277 ~G~lwva~~~~g~~v~~~ 294 (355)
T 3sre_A 277 TGDLWVGCHPNGMRIFFY 294 (355)
T ss_dssp TCCEEEEEESCHHHHHSC
T ss_pred CCcEEEEecCCceEEEEE
Confidence 59888877644 334444
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.28 E-value=0.17 Score=53.96 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=93.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC---eEEEecc--CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee--------
Q 004410 440 DDNYFISGSIDGKVRIWEVRRC---QVVDYTD--IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ-------- 506 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~---~~~~~~~--~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~-------- 506 (755)
++.-++.+- ++.||.-++... +.+.... .-..|..+..+|+|++||+.+ +..|.|..+..+....
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444433 467777776632 2333332 123578899999999999976 5589998887332111
Q ss_pred --eeeEEecccccCCCCCeEEEEEcCCC--CCEEEEEECCCcEEEEECCcceeeEE-E-------eeeccCCceEEEEEe
Q 004410 507 --QNQICLQGKKKLPGKRITGFQFSPSD--PSKVIVTSADSLVRVLCGENVVGKFK-A-------SAFRVAGSQMFATFT 574 (755)
Q Consensus 507 --~~~~~~~~~~~~~~~~I~~v~fsp~d--~~~l~s~s~Dg~I~iwd~~~~~~~~~-~-------~~~~~~~~v~~l~fs 574 (755)
.....+.........+|..+.|||-. +..|++-..|+.|++||+........ . ........|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 11122222111235789999999953 45899999999999999875211100 0 001122578899999
Q ss_pred cCCCEEEEEe--CCCcEEEE
Q 004410 575 SDGKHVVSPS--EDSNIYIW 592 (755)
Q Consensus 575 pdg~~L~sgs--~Dg~I~iW 592 (755)
+++-.|...+ ..|-|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887777755 77887754
No 313
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.13 E-value=0.0046 Score=72.05 Aligned_cols=181 Identities=8% Similarity=-0.088 Sum_probs=107.2
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC----CeEEEec-cCCcceEEEEEccC
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR----CQVVDYT-DIREIVSAVCYCPD 481 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~----~~~~~~~-~~~~~V~~v~~spd 481 (755)
..+.|+..++.+.+....+.....+..|+|++..+.++++-...+.|+.+++.. .....+. ........|++.+.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 346788888888776655555566788999983444444445568899999875 2222221 11233567888865
Q ss_pred CCeEE-EEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-CcEEEEECCcceeeEEE
Q 004410 482 GKGGI-VGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-SLVRVLCGENVVGKFKA 559 (755)
Q Consensus 482 g~~la-~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-g~I~iwd~~~~~~~~~~ 559 (755)
+..|+ +-...+.|.++++......... ........++++.|.++.++++-... +.|.++++.........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~--------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLF--------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEEC--------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEE--------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 54444 4455678999998865433211 11123456788988445444443333 67887776543222211
Q ss_pred eeeccCCceEEEEEecCCCEEEE-EeCCCcEEEEEcCCC
Q 004410 560 SAFRVAGSQMFATFTSDGKHVVS-PSEDSNIYIWNYSNQ 597 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L~s-gs~Dg~I~iWd~~~~ 597 (755)
.........|+|+|++..|+. -+..+.|.++++...
T Consensus 536 --~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 536 --TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp --CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred --eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 112234568999987655544 455678999998753
No 314
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.10 E-value=1.3 Score=45.42 Aligned_cols=174 Identities=8% Similarity=-0.015 Sum_probs=91.5
Q ss_pred EEEEeCCCCeEEEEEecCCcE--EEEEEeeCCCCEEEEEeCC--------CcEEEEEcCCCeEEEeccCCcc--eEEEEE
Q 004410 411 VRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSID--------GKVRIWEVRRCQVVDYTDIREI--VSAVCY 478 (755)
Q Consensus 411 V~iWdl~s~~~~~~~~h~~~V--~~i~fsp~d~~~l~sgs~D--------g~V~iwdl~~~~~~~~~~~~~~--V~~v~~ 478 (755)
+.+||..+++....-.....- .+++.. ++.+++.|+.+ ..+.+||+.+.+-......... -.+++
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~- 145 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL- 145 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-
Confidence 778898887754332211111 112222 56777777743 4589999988765543322211 11222
Q ss_pred ccCCCeEEEEeC-C-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC-----cEEE
Q 004410 479 CPDGKGGIVGTM-T-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS-----LVRV 547 (755)
Q Consensus 479 spdg~~la~gs~-d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg-----~I~i 547 (755)
..+++.++.|+. + ..+.+||+.+..-..... .......-..+.+ ++.+++.|+.++ .+.+
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP------MQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC------CSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEE
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC------CCCchhceEEEEE---CCEEEEEeccCCCCccceEEE
Confidence 246677777776 2 458999998876433211 1111112222333 557777777654 4778
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC--------------cEEEEEcCCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS--------------NIYIWNYSNQD 598 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg--------------~I~iWd~~~~~ 598 (755)
||..+..-............ .+++ .-++++++.|+.++ .|.+||+.+.+
T Consensus 217 yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 217 YSITDNKWAPFEAFPQERSS-LSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EECCCCeEEECCCCCCcccc-eeEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 88776543333211111111 1222 23677777777642 36778876654
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.10 E-value=1.7 Score=45.42 Aligned_cols=240 Identities=12% Similarity=0.015 Sum_probs=122.5
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
-..-+.|+|.|||++|++--..|.|++++..++... .+...
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~-------------------------------------- 71 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEV-------------------------------------- 71 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEEC--------------------------------------
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eeccc--------------------------------------
Confidence 345789999999998888766888988875444321 00000
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC----CeEEEE---eCCCcEEEEeCCCC----------eEE-EEE
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN----GFLLSS---SADKTVRLWQVGID----------RCL-RVF 425 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~----~~L~s~---s~Dg~V~iWdl~s~----------~~~-~~~ 425 (755)
+ ..+.......+.|+++|+ +.|... ..+..|.-|.+..+ +.+ ..+
T Consensus 72 ----------------~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~ 134 (347)
T 3das_A 72 ----------------P-GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGI 134 (347)
T ss_dssp ----------------T-TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEE
T ss_pred ----------------C-ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcC
Confidence 0 001123456788999985 433332 23455666655431 111 112
Q ss_pred e--cCCcEEEEEEeeCCCCEEEEEeC-------------CCcEEEEEcCCC---------eEEEeccCCcceEEEEEccC
Q 004410 426 S--HNNYVTSVAFNPVDDNYFISGSI-------------DGKVRIWEVRRC---------QVVDYTDIREIVSAVCYCPD 481 (755)
Q Consensus 426 ~--h~~~V~~i~fsp~d~~~l~sgs~-------------Dg~V~iwdl~~~---------~~~~~~~~~~~V~~v~~spd 481 (755)
. ....-..|+|.| ++.++++.+. .|+|.-.+.... ..+.-.++. ....++|+|+
T Consensus 135 p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~ 212 (347)
T 3das_A 135 PKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDK 212 (347)
T ss_dssp CCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTT
T ss_pred CCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCC
Confidence 1 223456799999 8887777542 355555555432 112223333 3457899998
Q ss_pred CCeEEEEe-CCCcEEEEECCCCeEeeeeeEEe---------ccc--ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 482 GKGGIVGT-MTGNCRFYDIKDNQLYQQNQICL---------QGK--KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 482 g~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~---------~~~--~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
|.+.++=. .++.-.|.-+..+...- ..... ... ...+......++|. ++.+++..-..+.|....
T Consensus 213 G~L~~~d~g~~~~deln~i~~G~nyG-wP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~~~~l~~v~ 289 (347)
T 3das_A 213 QRLFASEFGQDTWDELNAIKPGDNYG-WPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGLRGERLWRIP 289 (347)
T ss_dssp CCEEEEECCSSSCEEEEEECTTCBCC-TTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEESTTCSEEEEE
T ss_pred CCEEEEecCCCCCceeeEEcCCCEec-CCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeeccccCCEEEEEE
Confidence 76555422 23323333333222110 00000 000 00011245677776 345555555556666555
Q ss_pred CCccee--eEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 550 GENVVG--KFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 550 ~~~~~~--~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
+..... ..........+.+..++..|||.++++..
T Consensus 290 ~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 290 LKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 443211 11111123346789999999997766654
No 316
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.01 E-value=3.4 Score=48.13 Aligned_cols=194 Identities=10% Similarity=0.103 Sum_probs=116.6
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~ 467 (755)
..|.++.-..++.|..++.+| +..||..+.+...... ....|.++.. . ++ .|..++.+ -|..+|..+++...+.
T Consensus 63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-Q-GD-TLWLGALN-GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-E-TT-EEEEEETT-EEEEEETTTCCEEEEC
T ss_pred ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-c-CC-cEEEEcCC-cceeEeCCCCeEEEec
Confidence 457888777778777777655 7899988775432111 2335777654 3 44 45556655 6888998877765441
Q ss_pred -----cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 468 -----DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 468 -----~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
.....|.++....+|.. .+|+.. -+..||..+++.... ............|.++...+ ++..|.+++.
T Consensus 138 ~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~---~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~- 210 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTKDNQI-YVGTYN-GLCRYIPSNGKFEGI---PLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE- 210 (758)
T ss_dssp HHHHCCSCSCEEEEEECTTCCE-EEEETT-EEEEEETTTTEEEEE---CCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-
T ss_pred cCCCCcCCCeEEEEEEcCCCCE-EEEeCC-CHhhCccCCCceEEe---cCCCccccccceeEEEEEEC-CCCEEEEEEC-
Confidence 12346888888777754 456654 578889887764321 11111111234578887766 5555555654
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+-+..++..+....... ......|.++....+|.+.+.. . +-|.+++..++.
T Consensus 211 ~Gl~~~~~~~~~~~~~~--~l~~~~i~~i~~d~~g~lWigT-~-~Gl~~~~~~~~~ 262 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTE--AFHNNSIKSLALDGNGDLLAGT-D-NGLYVYHNDTTP 262 (758)
T ss_dssp EEEEEEETTTTEEEEEE--EEEEEEEEEEEECTTCCEEEEE-T-TEEEEECCTTSC
T ss_pred CCCeEEcCCCCeEEecc--CCCCCeEEEEEEcCCCCEEEEe-C-CceeEEecCCCc
Confidence 45777886653222111 1123457888888888776654 4 468888876543
No 317
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.82 E-value=0.12 Score=50.12 Aligned_cols=178 Identities=8% Similarity=-0.056 Sum_probs=100.7
Q ss_pred eEEEEeCCCcEEEEeCCCCe------EEEEEec--CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcc
Q 004410 401 FLLSSSADKTVRLWQVGIDR------CLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI 472 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~------~~~~~~h--~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~ 472 (755)
.|+....| +|+.=....+. ....+.. =..++.++|+| ++.+.++ .+|.|+-.+..+.....+......
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 56666666 65555444443 2334433 24678999999 8887777 678877777655333333332223
Q ss_pred --------eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee--eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 473 --------VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ--QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 473 --------V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~--~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
..++.|.|+|.+.++ .||.|+-++-.+..... .....+ ....-..+..|.+.| ++.+.++. |
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~v---g~~gw~~~~~lff~p-~G~Lyav~--d 153 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEV---GSGGWSGFKFLFFHP-NGYLYAVH--G 153 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEE---ECSSGGGEEEEEECT-TSCEEEEE--T
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEe---ccCCCCceEEEEECC-CceEEEEe--C
Confidence 378999999988888 56988877753311100 000000 000114678999999 88877777 7
Q ss_pred CcEEEEECCcc-------eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 543 SLVRVLCGENV-------VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 543 g~I~iwd~~~~-------~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
+.+.-...... ...... ...-.....+.|+++|.+.+.. +| +||....
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g--~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIG--QGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEE--SSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred CcEEecCCCCCCCcccccccceec--cCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence 76543322210 011111 1222234456799998877766 66 4454433
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.80 E-value=1.1 Score=45.34 Aligned_cols=133 Identities=10% Similarity=0.082 Sum_probs=74.1
Q ss_pred CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEEcCCCeEEEeccCCc---ceEEEEE
Q 004410 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIRE---IVSAVCY 478 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D-----g~V~iwdl~~~~~~~~~~~~~---~V~~v~~ 478 (755)
..+.+||+.+.+....-. ....-.+++. - ++.+++.|+.+ ..+.+||+.+.+-........ ...++.+
T Consensus 128 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 205 (301)
T 2vpj_A 128 TSMERYDPNIDQWSMLGDMQTAREGAGLVV-A-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL 205 (301)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred ceEEEEcCCCCeEEECCCCCCCcccceEEE-E-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE
Confidence 358889988876654432 1111122222 2 67788887765 458999998876554332222 1222222
Q ss_pred ccCCCeEEEEeCC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-----CcEEEE
Q 004410 479 CPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-----SLVRVL 548 (755)
Q Consensus 479 spdg~~la~gs~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-----g~I~iw 548 (755)
+++.++.|+.+ ..+.+||+.+++-..... ..........+.+ ++.+++.|+.+ ..|.+|
T Consensus 206 --~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~y 274 (301)
T 2vpj_A 206 --NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS------MTTPRCYVGATVL---RGRLYAIAGYDGNSLLSSIECY 274 (301)
T ss_dssp --TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEEEECCBCSSSBEEEEEEE
T ss_pred --CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC------CCCcccceeEEEE---CCEEEEEcCcCCCcccccEEEE
Confidence 66777777764 468999999876543211 1111112222333 55677777655 356777
Q ss_pred ECCcce
Q 004410 549 CGENVV 554 (755)
Q Consensus 549 d~~~~~ 554 (755)
|..+..
T Consensus 275 d~~~~~ 280 (301)
T 2vpj_A 275 DPIIDS 280 (301)
T ss_dssp ETTTTE
T ss_pred cCCCCe
Confidence 776543
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.68 E-value=0.47 Score=48.30 Aligned_cols=183 Identities=13% Similarity=0.087 Sum_probs=99.5
Q ss_pred eEEEEeCC-----CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEEcCCCeEEEecc
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~~~~~~~~ 468 (755)
.++.|+.+ ..+.+||..+.+....-. ....-.+++. - ++.+++.|+.++ .+.+||+.+.+-.....
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 141 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP 141 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-E-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC
Confidence 55566544 458899998887654432 1111122222 2 577888887664 57889988876554332
Q ss_pred CCc---ceEEEEEccCCCeEEEEeCC-------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 469 IRE---IVSAVCYCPDGKGGIVGTMT-------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 469 ~~~---~V~~v~~spdg~~la~gs~d-------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
... ...++. -+++.++.|+.+ ..+.+||+.++.-..... ..........+.+ ++.+++.
T Consensus 142 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~ 210 (302)
T 2xn4_A 142 MNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE------MSTRRSGAGVGVL---NNLLYAV 210 (302)
T ss_dssp CSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEEEE
T ss_pred CCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC------CccccccccEEEE---CCEEEEE
Confidence 221 122222 266777776643 358899998876443211 1111111222333 5577777
Q ss_pred EECC-----CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC-----cEEEEEcCCCC
Q 004410 539 TSAD-----SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS-----NIYIWNYSNQD 598 (755)
Q Consensus 539 ~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg-----~I~iWd~~~~~ 598 (755)
|+.+ ..+.+||..+..-............ ..++ .-++++++.|+.++ .|.+||+.+.+
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEE-EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 7654 4688899876543332211111111 1122 23677778877653 48888887664
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.60 E-value=0.65 Score=47.17 Aligned_cols=183 Identities=15% Similarity=0.047 Sum_probs=99.5
Q ss_pred eEEEEeCC-----CcEEEEeCCCCe---EEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEEcCCCeEEE
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDR---CLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVD 465 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~---~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~~~~~ 465 (755)
.++.|+.+ ..+.+||+.+.+ ....-. ....-.+++. - ++.+++.|+.++ .+.+||+.+.+-..
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 142 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-L-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM 142 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-E-CCEEEEEcccCCCcccceEEEEcCCCCeEEE
Confidence 55666644 468999988776 433321 1111122222 2 567777777543 58899998876543
Q ss_pred eccCC---cceEEEEEccCCCeEEEEeCC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 466 YTDIR---EIVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 466 ~~~~~---~~V~~v~~spdg~~la~gs~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
..... ....++.+ +++.++.|+.+ ..+.+||+.++.-..... ..........+.+ ++.+++
T Consensus 143 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~r~~~~~~~~---~~~i~v 211 (301)
T 2vpj_A 143 LGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP------MATKRSGAGVALL---NDHIYV 211 (301)
T ss_dssp EEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEEE
T ss_pred CCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC------CCcccccceEEEE---CCEEEE
Confidence 32211 11222222 67777777754 458999998876543211 1111112222333 557777
Q ss_pred EEECC-----CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 538 VTSAD-----SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 538 s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
.|+.+ ..+.+||..+..-............. .+ ..-++++++.|+.+ ..|.+||+.+.+
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV-GA-TVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce-eE-EEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 77664 46889998765443332111111111 22 22367777888765 357888887654
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.58 E-value=0.17 Score=53.93 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=95.3
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecC-----CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe--------
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN-----NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-------- 462 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~-----~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-------- 462 (755)
+.+| .++.+ .++.||.-++.....-+.+... ..|..+..+| +|++|+..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 3444 44433 4588888888744444444332 2588899999 999998875 5689998887321
Q ss_pred -----EEEec--c----CCcceEEEEEcc---CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc-----ccCCCCCe
Q 004410 463 -----VVDYT--D----IREIVSAVCYCP---DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK-----KKLPGKRI 523 (755)
Q Consensus 463 -----~~~~~--~----~~~~V~~v~~sp---dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~-----~~~~~~~I 523 (755)
+..+. . ....|..+.|+| .+..|++-+.|+.|++||+........ .+... .......|
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~---~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI---VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---EESCCCSEEESCSSCCCE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---chhccccccCCCcccceE
Confidence 11111 1 246799999999 467899999999999999986221111 11111 11233679
Q ss_pred EEEEEcCCCCCEEEEEE--CCCcEEEE
Q 004410 524 TGFQFSPSDPSKVIVTS--ADSLVRVL 548 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s--~Dg~I~iw 548 (755)
.+++|.+ ++-.|.+.+ ..|.|+-.
T Consensus 183 ~S~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECT-TSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcC-CCcEEEEEecCCCCCEEEE
Confidence 9999999 777777755 77888653
No 322
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.53 Score=49.03 Aligned_cols=96 Identities=9% Similarity=-0.028 Sum_probs=57.6
Q ss_pred eCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEee--------CCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcc
Q 004410 406 SADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNP--------VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI 472 (755)
Q Consensus 406 s~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~i~fsp--------~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~ 472 (755)
+.||.|..++..+|.....+. ...++.. .-.| ..+..+++|+.+|++...|+.+++.+........
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 578999999988885554443 2222221 1001 0456889999999999999999998854433321
Q ss_pred e--------EEEEEc-----cCCCeEEEEeCCCcEEEEECCCCe
Q 004410 473 V--------SAVCYC-----PDGKGGIVGTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 473 V--------~~v~~s-----pdg~~la~gs~dg~I~iwD~~~~~ 503 (755)
. .|.... -.+..|++|..+..+.+.+ ++++
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA 185 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC-TTSC
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC
Confidence 1 111111 1245677777777777777 4454
No 323
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.50 E-value=2.3 Score=44.59 Aligned_cols=109 Identities=14% Similarity=0.198 Sum_probs=66.4
Q ss_pred CCEEEEEEcCCCeEEEEeC------------------CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEE-eC
Q 004410 389 SEVLDLSWSKNGFLLSSSA------------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SI 449 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~------------------Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sg-s~ 449 (755)
...+++.+.++|.+..+++ .+.|.-+|. +++......-...+.|+|+| +++.|+.+ +.
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~sp-Dg~~lYvadt~ 241 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISP-DGKYVYIAELL 241 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECT-TSSEEEEEEGG
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECC-CCCEEEEEeCC
Confidence 3567888888884433332 234555554 34333334446679999999 88766555 46
Q ss_pred CCcEEEEEcCC-CeEE--EeccCCcceEEEEEcc-CCCeEEEEeCC-CcEEEEECC
Q 004410 450 DGKVRIWEVRR-CQVV--DYTDIREIVSAVCYCP-DGKGGIVGTMT-GNCRFYDIK 500 (755)
Q Consensus 450 Dg~V~iwdl~~-~~~~--~~~~~~~~V~~v~~sp-dg~~la~gs~d-g~I~iwD~~ 500 (755)
.+.|..|++.. +.+. .........-.+++.+ +|.+.+++..+ +.|..|+..
T Consensus 242 ~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 242 AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 78899999863 3332 1223456678889988 58876655544 344445443
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.38 E-value=1.6 Score=44.28 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=79.2
Q ss_pred eEEEEeCC------CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeC---------CCcEEEEEcCCCeE
Q 004410 401 FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSI---------DGKVRIWEVRRCQV 463 (755)
Q Consensus 401 ~L~s~s~D------g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~---------Dg~V~iwdl~~~~~ 463 (755)
.++.|+.+ ..+.+||..+.+....-. ....-.+++. - ++.+++.|+. -..+.+||+.+.+-
T Consensus 104 iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 104 IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-A-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-E-CCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence 55555544 468899998887654432 1111122222 2 5677777764 34588999998865
Q ss_pred EEeccCCc---ceEEEEEccCCCeEEEEeCC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 464 VDYTDIRE---IVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 464 ~~~~~~~~---~V~~v~~spdg~~la~gs~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
........ .-.++.+ +++.++.|+.+ ..+.+||+.+++-..... ..........+.+ ++.+
T Consensus 182 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~i 250 (306)
T 3ii7_A 182 TELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP------MPWKGVTVKCAAV---GSIV 250 (306)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCC------CSCCBSCCEEEEE---TTEE
T ss_pred EECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC------CCCCccceeEEEE---CCEE
Confidence 54432221 1222222 66777777654 358999998876433211 1111122233333 5577
Q ss_pred EEEEECC-----CcEEEEECCcceee
Q 004410 536 VIVTSAD-----SLVRVLCGENVVGK 556 (755)
Q Consensus 536 l~s~s~D-----g~I~iwd~~~~~~~ 556 (755)
++.|+.+ ..+.+||..+..-.
T Consensus 251 ~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 251 YVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 7777754 45778887764433
No 325
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.27 E-value=0.58 Score=47.68 Aligned_cols=183 Identities=11% Similarity=0.023 Sum_probs=100.0
Q ss_pred eEEEEeCC----CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEEcCCCeEEEecc
Q 004410 401 FLLSSSAD----KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 401 ~L~s~s~D----g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D------g~V~iwdl~~~~~~~~~~ 468 (755)
.++.|+.+ ..+.+||+.+++....-. ....-.+++. - ++.+++.|+.+ ..+.+||+.+.+-.....
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 135 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-A-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS 135 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-E-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC
T ss_pred EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-E-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC
Confidence 55666644 678899998887654432 1111112222 2 67788888765 468999999876554332
Q ss_pred CCc---ceEEEEEccCCCeEEEEeC---------CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 469 IRE---IVSAVCYCPDGKGGIVGTM---------TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 469 ~~~---~V~~v~~spdg~~la~gs~---------dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
... ...++. -+++.++.|+. -..+.+||+.+..-..... .......-..+.+ ++.++
T Consensus 136 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~i~ 204 (306)
T 3ii7_A 136 MLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP------MIEARKNHGLVFV---KDKIF 204 (306)
T ss_dssp CSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEE
T ss_pred CcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC------ccchhhcceEEEE---CCEEE
Confidence 221 122222 26677777654 3458899999876443211 1111111222222 45677
Q ss_pred EEEECC-----CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 537 IVTSAD-----SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 537 ~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
+.|+.+ ..+.+||..+..-...............+.+ ++++++.|+.+ ..|.+||+.+.+
T Consensus 205 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 205 AVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 776653 4578888776543322211111111222222 67788888754 458888887654
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.02 E-value=2.1 Score=43.72 Aligned_cols=174 Identities=11% Similarity=0.041 Sum_probs=89.3
Q ss_pred EEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC-------CcEEEEEcCCCeEEEeccCCcce--EEEEEc
Q 004410 411 VRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-------GKVRIWEVRRCQVVDYTDIREIV--SAVCYC 479 (755)
Q Consensus 411 V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D-------g~V~iwdl~~~~~~~~~~~~~~V--~~v~~s 479 (755)
+.+||..+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-.......... .+++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS- 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-
Confidence 7788888776644322 11111122222 56777787764 24888999887655433322211 11222
Q ss_pred cCCCeEEEEeC------CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-----CcEEEE
Q 004410 480 PDGKGGIVGTM------TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-----SLVRVL 548 (755)
Q Consensus 480 pdg~~la~gs~------dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-----g~I~iw 548 (755)
.+++.++.|+. -..+.+||+.+++-..... ..........+.+ ++.+++.|+.+ ..+.+|
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP------MKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAF 227 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC------CCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEE
Confidence 46777777764 2359999999876443211 1111111222332 55777777654 346678
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC--------------CcEEEEEcCCCC
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED--------------SNIYIWNYSNQD 598 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D--------------g~I~iWd~~~~~ 598 (755)
|..+..-............ .+++ .-++++++.|+.+ ..|.+||+.+.+
T Consensus 228 d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 228 DLKTNKWEVMTEFPQERSS-ISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp ETTTCCEEECCCCSSCCBS-CEEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred ECCCCeEEECCCCCCcccc-eEEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 8766433322211111111 1222 2366777777654 346777776554
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.41 E-value=1.3 Score=48.33 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=63.9
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE---ecc------CCcceEEEEEccC---CCeEEEEeC-----
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTD------IREIVSAVCYCPD---GKGGIVGTM----- 490 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---~~~------~~~~V~~v~~spd---g~~la~gs~----- 490 (755)
-.....|+|.| +++++++-...+.|++++..++.... +.. .......|+|+|+ +..|.+...
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 88877765444578888876554332 211 2355779999995 555655442
Q ss_pred --------CCcEEEEECCCC--eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 491 --------TGNCRFYDIKDN--QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 491 --------dg~I~iwD~~~~--~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
...|.-|++... .+.. .+..+........+....|+|.| ++.++++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~-~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEK-PVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEE-EEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCC-cEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 134665655432 2211 11111111112235678999999 7776666543
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.27 E-value=1.6 Score=44.18 Aligned_cols=175 Identities=14% Similarity=0.154 Sum_probs=94.3
Q ss_pred CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEEcCCCeEEEeccCCc---ceEEEEE
Q 004410 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVDYTDIRE---IVSAVCY 478 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~~~~~~~~~~~---~V~~v~~ 478 (755)
..+.+||+.+.+....-. ....-.+++. - ++.+++.|+.++ .+.+||..+.+-........ ...++.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 458889988876544321 1111112222 2 677788887653 58899998876554332221 1222222
Q ss_pred ccCCCeEEEEeCCC-----cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-------CcEE
Q 004410 479 CPDGKGGIVGTMTG-----NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-------SLVR 546 (755)
Q Consensus 479 spdg~~la~gs~dg-----~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-------g~I~ 546 (755)
+++.++.|+.++ .+.+||+.+++-..... ..........+.+ ++.+++.|+.+ ..+.
T Consensus 108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 108 --NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP------MNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp --TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEE
T ss_pred --CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC------CCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEE
Confidence 677778877654 48889998876543211 1111111222222 55666666542 4588
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
+||..+..-............ .+++ .-++++++.|+.+ ..+.+||+.+.+
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSG-AGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EEeCCCCcEEECCCCcccccc-ccEE-EECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 888876544333211111111 1222 2367777887765 368888887764
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.99 E-value=7.8 Score=41.44 Aligned_cols=240 Identities=13% Similarity=0.211 Sum_probs=140.4
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecc--cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H--~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
++..+|..+.+|.-. ..++.|++++.+.+ +..| ...|.-=+|-.+ +.|+-.+ +..|.-|++....
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~k----------lks~~~~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s 136 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSK----------MKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGES 136 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEE----------EEEEECSSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhh----------hcceecCCCceEEEecCC-CeEEEEc-CCeeEEecccCCC
Confidence 367889999888765 67899999886554 2222 235655667543 3555555 4579999996532
Q ss_pred -eeeeeecCC--CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 318 -RLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 318 -~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
..+.+..+. .....+.+..+.......+. -+. ..++ .+.-....+....+.-+.+.||......+
T Consensus 137 ~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~----------GI~-~~~~-~v~G~mQLYS~er~~sQ~ieGhaa~F~~~ 204 (494)
T 1bpo_A 137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT----------GIS-AQQN-RVVGAMQLYSVDRKVSQPIEGHAASFAQF 204 (494)
T ss_dssp CCEEEEECCGGGTTCEEEEEEECTTSSEEEEE----------EEE-EETT-EEEEEEEEEESTTCCEEEECCSEEEEEEE
T ss_pred CchhheecchhcccceEEEEEECCCCCeEEEE----------eec-ccCC-cccceEEEeeccccccchheeeeeeeEEE
Confidence 222332221 12222333333322221111 010 0111 11111223333344556778887666555
Q ss_pred EEcCCC----eEEEEeCC---CcEEEEeCCCC---------eEEEEE-e---cCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 395 SWSKNG----FLLSSSAD---KTVRLWQVGID---------RCLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 395 ~~s~~~----~L~s~s~D---g~V~iWdl~s~---------~~~~~~-~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
....+. .++.+... +.++|-++... +....+ . ..+...++.+++ ....++.-+.-|.|.
T Consensus 205 ~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~ 283 (494)
T 1bpo_A 205 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIH 283 (494)
T ss_dssp ECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEE
T ss_pred ecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEE
Confidence 443222 33333332 78999998543 111111 1 467788999998 888899999999999
Q ss_pred EEEcCCCeEEEec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 455 IWEVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 455 iwdl~~~~~~~~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
+||+.++.++... -..+.|...+.+.....++.....|.|.-..+....++
T Consensus 284 lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 284 LYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred EEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 9999999988533 34556666666666677777778888877777766554
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.92 E-value=1.4 Score=46.07 Aligned_cols=154 Identities=9% Similarity=0.006 Sum_probs=84.7
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe-------ccCCcceEEEEEccC---CCeEEEE-e--CCCc
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-------TDIREIVSAVCYCPD---GKGGIVG-T--MTGN 493 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~-------~~~~~~V~~v~~spd---g~~la~g-s--~dg~ 493 (755)
.-.....|+|.| ++++|++--..|.|++++..+++.... .........|+++|+ +..|.+. + .++.
T Consensus 30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 345678999999 888777765589999998765554321 122456789999995 3445443 2 3455
Q ss_pred EEEEECCCCe----EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-------------CCcEEEEECCccee-
Q 004410 494 CRFYDIKDNQ----LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-------------DSLVRVLCGENVVG- 555 (755)
Q Consensus 494 I~iwD~~~~~----~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-------------Dg~I~iwd~~~~~~- 555 (755)
|.-|.+..+. .....+.-+........+.-..|.|.| ++.++++.+. .|.|.-++......
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 6666665421 111111111111112233456799999 7776666542 24454444332100
Q ss_pred -----eEEEeeeccCCceEEEEEecCCCEEEEE
Q 004410 556 -----KFKASAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 556 -----~~~~~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
.......++. ....++|+|+|.+.++=
T Consensus 188 ~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 188 GNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp TCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred CCCCCCCeEEeeCCC-CcceEEECCCCCEEEEe
Confidence 0011113333 34578898887765543
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.90 E-value=3.3 Score=42.13 Aligned_cols=182 Identities=12% Similarity=0.062 Sum_probs=97.7
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEE-ec-CCcEEEEEEeeCCCCEEEEEeC----C-------CcEEEEEcCCCeEEEec
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVF-SH-NNYVTSVAFNPVDDNYFISGSI----D-------GKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~-~h-~~~V~~i~fsp~d~~~l~sgs~----D-------g~V~iwdl~~~~~~~~~ 467 (755)
.++.|+ ..+.+||..+++....- .. ........... ++.+++.|+. + ..+.+||..+.+-....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 57999999988865421 11 12222222233 7788888874 1 12788999887755433
Q ss_pred cCCcc---eEEEEEccCCCeEEEEeCC--------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 468 DIREI---VSAVCYCPDGKGGIVGTMT--------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 468 ~~~~~---V~~v~~spdg~~la~gs~d--------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
..... ...+.+ +++.++.|+.+ ..+.+||+.+++-..... .......-..+.+ ++.++
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iy 152 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP------LPYVVYGHTVLSH---MDLVY 152 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC------CSSCCBSCEEEEE---TTEEE
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC------CCCcccceeEEEE---CCEEE
Confidence 32222 122222 66677777642 358999998876432111 1111111222222 55677
Q ss_pred EEEEC-C-----CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC-----cEEEEEcCCCC
Q 004410 537 IVTSA-D-----SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS-----NIYIWNYSNQD 598 (755)
Q Consensus 537 ~s~s~-D-----g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg-----~I~iWd~~~~~ 598 (755)
+.|+. + ..+.+||..+..-....... ....-.+++ .-++++++.|+.++ .+.+||+.+.+
T Consensus 153 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 153 VIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EECCBCTTSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEeCCCCCCcccceEEEEeCCCCeEEECCCCC-CchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 77765 2 46888887765433322111 111111222 23677888887654 48888887764
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.83 E-value=0.29 Score=47.38 Aligned_cols=98 Identities=9% Similarity=-0.007 Sum_probs=59.0
Q ss_pred EEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEE------EEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR------VFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~------~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
..++.|.++|.|..+ .||.|+-++-.+..... .+. .=..+..|.|.| ++.+.+.. |+.++-+......
T Consensus 90 F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCC
Confidence 457889999966666 66999888764322111 111 114679999999 88887777 7876554444322
Q ss_pred EEEe-------c-cCCcceEEEEEccCCCeEEEEeCCCcE
Q 004410 463 VVDY-------T-DIREIVSAVCYCPDGKGGIVGTMTGNC 494 (755)
Q Consensus 463 ~~~~-------~-~~~~~V~~v~~spdg~~la~gs~dg~I 494 (755)
...+ . ..-...+.+.|.++|...++. +|.+
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 1111 1 122234556788888777776 6633
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.82 E-value=1.3 Score=45.07 Aligned_cols=175 Identities=11% Similarity=0.015 Sum_probs=93.8
Q ss_pred CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEEcCCCeEEEeccCC---cceEEEEE
Q 004410 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIR---EIVSAVCY 478 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D-----g~V~iwdl~~~~~~~~~~~~---~~V~~v~~ 478 (755)
..+.+||+.+.+....-. ....-.+++. - ++.+++.|+.+ ..+.+||+.+.+-....... ....++.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGV-I-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEE-E-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEE-E-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 468899998876544322 1111112222 2 56777777644 36889999887655433222 11222333
Q ss_pred ccCCCeEEEEeCC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-----CcEEEE
Q 004410 479 CPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-----SLVRVL 548 (755)
Q Consensus 479 spdg~~la~gs~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-----g~I~iw 548 (755)
+++.++.|+.+ ..+.+||+.++.-..... ..........+.+ ++.+++.|+.+ ..+.+|
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA------MNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC------CSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC------CCCccccceEEEE---CCEEEEEeCCCCCCccceEEEE
Confidence 67777777654 458999998876443211 1111112223333 55677777654 568889
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
|..+..-............ .+++. -++++++.|+.+ ..|.+||+.+.+
T Consensus 237 d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp ETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eCCCCcEEECCCCCCCccc-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 9876543322211111111 12222 367777777754 347778876654
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.64 E-value=3.5 Score=50.60 Aligned_cols=204 Identities=8% Similarity=0.099 Sum_probs=112.8
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCC-CeEEEEEe-c----CCcEEEEEEeeCCCCEEEEEe-------CCCcEEEE
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRCLRVFS-H----NNYVTSVAFNPVDDNYFISGS-------IDGKVRIW 456 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s-~~~~~~~~-h----~~~V~~i~fsp~d~~~l~sgs-------~Dg~V~iw 456 (755)
+|.-=.|-....|+..+ +..|+.|++.. ..+.+.|. | +..|..-..++ +.++++..+ ..|.+.+|
T Consensus 107 ~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 107 DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred CceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeee
Confidence 34445565555333333 35689999863 34555553 2 45566777777 777766543 35889999
Q ss_pred EcCCCeEEEeccCCcceEEEEEc--cC-CCeEEEEeC---CCcEEEEECCCC----eEeeeeeEEecccccCCCCCeEEE
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYC--PD-GKGGIVGTM---TGNCRFYDIKDN----QLYQQNQICLQGKKKLPGKRITGF 526 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~s--pd-g~~la~gs~---dg~I~iwD~~~~----~~~~~~~~~~~~~~~~~~~~I~~v 526 (755)
..+.+....+.+|......+... +. .+.++.+.. .+.++|.++... .........+.-.......-..++
T Consensus 185 S~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~ 264 (1630)
T 1xi4_A 185 SVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (1630)
T ss_pred ecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE
Confidence 98876655555555444333332 11 122332222 268999988543 111111111111011123334567
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 527 QFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.++ .-..+..-+.-|.|.++|+.+....+... -...+|...+-.....=++.....|.|.--.++...
T Consensus 265 ~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~r--is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 265 QISE-KHDVVFLITKYGYIHLYDLETGTCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred Eecc-ccCEEEEEecCceEEEEecccchhhhhcc--ccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 7887 67788889999999999999987777652 233344433433333334444466666666655443
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.048 Score=56.98 Aligned_cols=198 Identities=8% Similarity=0.063 Sum_probs=103.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEecC--CcEEEEEEe--eCCCCEEEEE-eCCCcEEEEEcCCCeEEEeccCCcce
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFN--PVDDNYFISG-SIDGKVRIWEVRRCQVVDYTDIREIV 473 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~--~~V~~i~fs--p~d~~~l~sg-s~Dg~V~iwdl~~~~~~~~~~~~~~V 473 (755)
++.++.++.||.|.-.|..+|+.+-.+... .++....-. +.++..++.. +.||.|..++..++...........+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 347889999999999999999999888643 222221100 1122333333 68999999999887544211111111
Q ss_pred E--EEEEc-----------cCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE---EcC-CCCCEE
Q 004410 474 S--AVCYC-----------PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ---FSP-SDPSKV 536 (755)
Q Consensus 474 ~--~v~~s-----------pdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~---fsp-~d~~~l 536 (755)
. -+... ..+..+++|+.+|++...|+.+|+.+........... .......+.. +.. ..+..|
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~-~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGY-FGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---------------------CCEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccc-ccccccccccccccccccCCCeE
Confidence 0 01110 1456788999999999999999999876432110000 0000000111 100 123466
Q ss_pred EEEECCCcEEEEECCcceeeEEEee--e-ccCC--ce-EEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 537 IVTSADSLVRVLCGENVVGKFKASA--F-RVAG--SQ-MFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~~~~~--~-~~~~--~v-~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
+.+..+..+.+.+ .+.. ...... . .... .+ ..-..+.|+.+ +.++.||.|+.+|..++...
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 6666666666554 2211 111000 0 0000 00 00001234666 45789999999999888743
No 336
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.45 E-value=7.9 Score=39.77 Aligned_cols=242 Identities=12% Similarity=0.185 Sum_probs=138.5
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC-ee
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH-ER 318 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~-~~ 318 (755)
++..+|..+.+|.-. ...+.|++++.+.+.-+ . . ....|.-=+|-.+ +.|+-.+ +..|.-|++... ..
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks-~------~-~~e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P 139 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA-H------T-MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQP 139 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE-E------E-CSSCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcc-e------e-cCCccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCC
Confidence 367799999888776 67899999887654211 1 1 1246666677644 3455544 357999998753 22
Q ss_pred eeeeecCC--CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 319 LDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 319 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
.+-+..+. .....+.+..+.......+. -+.. .++ .+.-....+....+.-+.+.||......+..
T Consensus 140 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~----------GI~~-~~~-~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~ 207 (365)
T 2xzh_A 140 VKMFDRHSSLAGCQIINYRTDAKQKWLLLT----------GISA-QQN-RVVGAMQLYSVDRKVSQPIEGHAASFAQFKM 207 (365)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSCEEEEE----------EEEE-ETT-EEEEEEEEEETTTTEEEEECCSEEEEEEECC
T ss_pred ceeeecchhcccceEEEEEECCCCCEEEEE----------eEec-cCC-ccceeEEEEeecccccceeeeeeeeeEEEec
Confidence 22332221 12222333333322221111 0100 111 1111122233334445667788655544433
Q ss_pred cCCC---eE-EEEeC---CCcEEEEeCCCC---------eEEEEE-e---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 397 SKNG---FL-LSSSA---DKTVRLWQVGID---------RCLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 397 s~~~---~L-~s~s~---Dg~V~iWdl~s~---------~~~~~~-~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
..+. .| +.+.. .+.++|-++... +....+ . ..+...++.+++ ....++.-+.-|.|++|
T Consensus 208 ~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihly 286 (365)
T 2xzh_A 208 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLY 286 (365)
T ss_dssp TTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEE
T ss_pred CCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEE
Confidence 2221 23 33322 258899988542 112222 1 467788899998 88889999999999999
Q ss_pred EcCCCeEEEec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 457 EVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 457 dl~~~~~~~~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
|+.++.++... -..+.|...+.+.....++.....|.|.-..++...++
T Consensus 287 DleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 287 DLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred EcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 99999998533 34556666666666667777778888887777766544
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.81 E-value=2.4 Score=44.03 Aligned_cols=176 Identities=9% Similarity=-0.006 Sum_probs=88.7
Q ss_pred CcEEEEeCCCCeEEEEEecC---CcEEEEEEeeCCCCEEEEEeCC-----------------------------------
Q 004410 409 KTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSID----------------------------------- 450 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~h~---~~V~~i~fsp~d~~~l~sgs~D----------------------------------- 450 (755)
..+.+||+.+.+....-... ..-.+++. . ++.+++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 46899999888765433211 11122222 3 77888888865
Q ss_pred ----CcEEEEEcCCCeEEEeccCCc--ce-EEEEEccCCCeEEEEeC------CCcEEEEEC--CCCeEeeeeeEEeccc
Q 004410 451 ----GKVRIWEVRRCQVVDYTDIRE--IV-SAVCYCPDGKGGIVGTM------TGNCRFYDI--KDNQLYQQNQICLQGK 515 (755)
Q Consensus 451 ----g~V~iwdl~~~~~~~~~~~~~--~V-~~v~~spdg~~la~gs~------dg~I~iwD~--~~~~~~~~~~~~~~~~ 515 (755)
..+.+||+.+.+-........ .- .+++. -+++.++.|+. ...+.+||+ .+..-... ..
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~-----~~- 236 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL-----AP- 236 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEEC-----CC-
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEec-----CC-
Confidence 578999998876543322221 11 22222 26667777654 345777887 44332211 00
Q ss_pred ccCCCC--CeEEEEEcCCCCCEEEEEECC----------------------CcEEEEECCcceeeEEEeeeccCCceEEE
Q 004410 516 KKLPGK--RITGFQFSPSDPSKVIVTSAD----------------------SLVRVLCGENVVGKFKASAFRVAGSQMFA 571 (755)
Q Consensus 516 ~~~~~~--~I~~v~fsp~d~~~l~s~s~D----------------------g~I~iwd~~~~~~~~~~~~~~~~~~v~~l 571 (755)
...... ....+.+ ++.+++.|+.+ ..+.+||..+..-............ ..
T Consensus 237 ~~~~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~ 311 (357)
T 2uvk_A 237 VSSPDGVAGGFAGIS---NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GV 311 (357)
T ss_dssp SSTTTCCBSCEEEEE---TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SE
T ss_pred CCCCcccccceEEEE---CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ce
Confidence 111111 1122222 55677777632 2577888776544333321211111 22
Q ss_pred EEecCCCEEEEEeCCC------cEEEEEcCCCC
Q 004410 572 TFTSDGKHVVSPSEDS------NIYIWNYSNQD 598 (755)
Q Consensus 572 ~fspdg~~L~sgs~Dg------~I~iWd~~~~~ 598 (755)
+...++++++.|+.++ .|.++++++++
T Consensus 312 ~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 312 SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 2335788888888653 36666887765
No 338
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.58 E-value=1.8 Score=44.04 Aligned_cols=175 Identities=8% Similarity=-0.004 Sum_probs=94.0
Q ss_pred CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeC----C-----CcEEEEEcCCCeEEEeccCC---cceE
Q 004410 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSI----D-----GKVRIWEVRRCQVVDYTDIR---EIVS 474 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~----D-----g~V~iwdl~~~~~~~~~~~~---~~V~ 474 (755)
..+.+||..+++....-. ....-.+++. - ++.+++.|+. + ..+.+||+.+.+-....... ....
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 468888988877554321 1111112222 2 5677777765 2 46889999887655433222 1222
Q ss_pred EEEEccCCCeEEEEeCC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-----Cc
Q 004410 475 AVCYCPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-----SL 544 (755)
Q Consensus 475 ~v~~spdg~~la~gs~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-----g~ 544 (755)
.+.+ +++.++.|+.+ ..+.+||+.+++-..... .......-..+.+ ++.+++.|+.+ ..
T Consensus 117 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~ 185 (308)
T 1zgk_A 117 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP------MLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNS 185 (308)
T ss_dssp EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC------CSSCCBSCEEEEE---TTEEEEECCBCSSCBCCC
T ss_pred EEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC------CCccccceEEEEE---CCEEEEEeCCCCCCcCce
Confidence 2333 67777777644 358899998876543211 1111112222333 55677777654 45
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
+.+||..+..-............ .+++. -++++++.|+.+ ..|.+||+.+.+
T Consensus 186 ~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 186 AECYYPERNEWRMITAMNTIRSG-AGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp EEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEEeCCCCeEeeCCCCCCcccc-ceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 88888776543322211111111 12222 267777777765 458899987765
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=92.28 E-value=4.8 Score=40.97 Aligned_cols=175 Identities=10% Similarity=0.031 Sum_probs=92.3
Q ss_pred cEEEEeCCCCeEEEEE-ec-CCcEEEEEEeeCCCCEEEEEeC----CC-------cEEEEEcCCCeEEEeccCCc---ce
Q 004410 410 TVRLWQVGIDRCLRVF-SH-NNYVTSVAFNPVDDNYFISGSI----DG-------KVRIWEVRRCQVVDYTDIRE---IV 473 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~-~h-~~~V~~i~fsp~d~~~l~sgs~----Dg-------~V~iwdl~~~~~~~~~~~~~---~V 473 (755)
.+.+||..+++....- .. ........... ++.+++.|+. ++ .+.+||..+.+-........ ..
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 3789999988765521 11 11122222233 6788888873 12 17788988876654332221 12
Q ss_pred EEEEEccCCCeEEEEeCC-------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-----
Q 004410 474 SAVCYCPDGKGGIVGTMT-------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA----- 541 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~d-------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~----- 541 (755)
..+.+ +++.++.|+.+ ..+.+||+.+++-..... +.... ..-..+. . ++.+++.|+.
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r----~~~~~~~--~-~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN--LPIKV----YGHNVIS--H-NGMIYCLGGKTDDKK 172 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC--CSSCE----ESCEEEE--E-TTEEEEECCEESSSC
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC--CCCcc----cccEEEE--E-CCEEEEEcCCCCCCC
Confidence 22222 67777777754 248889998876543211 11101 1111222 2 5667777654
Q ss_pred -CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 542 -DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 542 -Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
-..+.+||..+..-....... ....-.+++. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMK-TPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ccceEEEEcCCCCEEEECCCCC-CCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 245888998775443332111 1111112222 367777777754 347788887765
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.24 E-value=5.2 Score=41.40 Aligned_cols=95 Identities=5% Similarity=-0.048 Sum_probs=48.6
Q ss_pred CcEEEEeCCCCeEEEEEe--cCCcE-EEEEEeeCCCCEEEEEeC------CCcEEEEEc--CCCeEEEeccCC---cceE
Q 004410 409 KTVRLWQVGIDRCLRVFS--HNNYV-TSVAFNPVDDNYFISGSI------DGKVRIWEV--RRCQVVDYTDIR---EIVS 474 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~--h~~~V-~~i~fsp~d~~~l~sgs~------Dg~V~iwdl--~~~~~~~~~~~~---~~V~ 474 (755)
..+.+||+.+.+....-. ....- .+++.. ++.+++.|+. ...+.+||+ .+.+-....... ....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 578999998877655432 11112 233332 5677777764 345777887 444433322221 1111
Q ss_pred EEEEccCCCeEEEEeCC----------------------CcEEEEECCCCeEe
Q 004410 475 AVCYCPDGKGGIVGTMT----------------------GNCRFYDIKDNQLY 505 (755)
Q Consensus 475 ~v~~spdg~~la~gs~d----------------------g~I~iwD~~~~~~~ 505 (755)
+.+...+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~ 298 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD 298 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee
Confidence 11223367777777632 24788998876543
No 341
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.15 E-value=21 Score=41.30 Aligned_cols=200 Identities=12% Similarity=0.084 Sum_probs=116.5
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCe--EEEEEe--------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR--CLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~--~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
..|.++.-..+|.|..|+.+ -+..++..+++ ....+. ....|.++.-.. ++++. .|+ ++-|..||.
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lW-igt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK-EQQLW-IAT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT-TSCEE-EEE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECC-CCCEE-EEe-CCcHhhcCc
Confidence 46888888888877777765 46667665432 122222 124588888766 55544 455 467999999
Q ss_pred CCCeEEEec--c-----CCcceEEEEEccCCCeEEEEeCCCcEEEEECCC------CeEeeeeeEEecccccCCCCCeEE
Q 004410 459 RRCQVVDYT--D-----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD------NQLYQQNQICLQGKKKLPGKRITG 525 (755)
Q Consensus 459 ~~~~~~~~~--~-----~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~------~~~~~~~~~~~~~~~~~~~~~I~~ 525 (755)
.+++...+. . ....|.++....+| .|.+|+..+-|.+||..+ ...... .............|.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~i~~ 476 (758)
T 3ott_A 400 ATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG-QLWISTCLGGIFVVDKHKLMQSTSGQYIAE--QNYSVHNGLSGMFINQ 476 (758)
T ss_dssp TTTEEEEEEEECCC--CBSSSEEEEEECTTS-EEEEEESSSCEEEEEHHHHHHCCSSEEECS--EEECGGGTCSCSCEEE
T ss_pred CCCcEEEeecCCCcCCCCCceEEEEEEcCCC-CEEEEECCCceEEEccccccccCCcceecc--cccccccccccceeee
Confidence 888766432 1 12457888877665 577788777788898653 111100 0011111223456888
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe-eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS-AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+...+ ++.+.+.++..+-|..+|..+........ .......+.++....+|.+.+.. .. -|..|+..++.
T Consensus 477 i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~ 547 (758)
T 3ott_A 477 IIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HG-GVMRINPKDES 547 (758)
T ss_dssp EEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TT-EEEEECC--CC
T ss_pred EEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cC-ceEEEecCCCc
Confidence 88877 55544433444557778876543222110 00112457788888888877654 44 58888876554
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.73 E-value=4.6 Score=46.55 Aligned_cols=194 Identities=10% Similarity=0.126 Sum_probs=103.5
Q ss_pred eEEEEeCC----CcEEEEeCCCCeEEEEE-e-------cCC-cEEEEEEeeCCCCEEEEEeCCC------cEEEEEcCCC
Q 004410 401 FLLSSSAD----KTVRLWQVGIDRCLRVF-S-------HNN-YVTSVAFNPVDDNYFISGSIDG------KVRIWEVRRC 461 (755)
Q Consensus 401 ~L~s~s~D----g~V~iWdl~s~~~~~~~-~-------h~~-~V~~i~fsp~d~~~l~sgs~Dg------~V~iwdl~~~ 461 (755)
.++.|+.+ ..+.+||..+++....- . ... .-..+.+.. ++.+++.|+.++ .+.+||+.+.
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 56666643 46889998887665443 1 111 122223221 566777777543 5889999887
Q ss_pred eEEEeccCCcc--eEEEEEccCCCeEEEEeCCC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 462 QVVDYTDIREI--VSAVCYCPDGKGGIVGTMTG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 462 ~~~~~~~~~~~--V~~v~~spdg~~la~gs~dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
+-........+ -.+++.-.+++.++.|+.++ .+.+||+.++.-..... .+..........++.+...++.+++
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~---~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP---KDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC---SSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC---CCCCCCcccceeEEEEeCCCCEEEE
Confidence 65543322221 22333334788888887655 69999999876432110 1111112222334555552366777
Q ss_pred EEEC--C-----CcEEEEECCcce------eeEEEeeeccCCceEEEEEecCCCEEEEEeCC--------CcEEEEEcCC
Q 004410 538 VTSA--D-----SLVRVLCGENVV------GKFKASAFRVAGSQMFATFTSDGKHVVSPSED--------SNIYIWNYSN 596 (755)
Q Consensus 538 s~s~--D-----g~I~iwd~~~~~------~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D--------g~I~iWd~~~ 596 (755)
.|+. + +.+.+||..+.. .............-.+++...++++++.|+.+ ..|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7765 2 358888877654 12111100111111223333347777777743 4577888776
Q ss_pred CC
Q 004410 597 QD 598 (755)
Q Consensus 597 ~~ 598 (755)
.+
T Consensus 636 ~~ 637 (695)
T 2zwa_A 636 ET 637 (695)
T ss_dssp TE
T ss_pred Ce
Confidence 54
No 343
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=90.77 E-value=16 Score=37.48 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=62.7
Q ss_pred eEEEEeCCCcEEEEeCC--C---------CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe-------
Q 004410 401 FLLSSSADKTVRLWQVG--I---------DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ------- 462 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~--s---------~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~------- 462 (755)
.|+..+..|.+..+.+. . |.....+.....|.++...+ .+.+++..+..|.++.-.+..-.
T Consensus 159 ~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~ 237 (327)
T 3uc1_A 159 DLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEEYPVQGRGGK 237 (327)
T ss_dssp EEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred EEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHHccccCcCCC
Confidence 67777777877777655 1 22222233566788777766 66789999999999888764321
Q ss_pred -EE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC
Q 004410 463 -VV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 463 -~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~ 501 (755)
.. .+....+.+..+....+...++..+.+|.+.-++...
T Consensus 238 G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 238 GVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred cEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 11 1222133454444444556777788889888887654
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.55 E-value=24 Score=38.96 Aligned_cols=115 Identities=17% Similarity=0.040 Sum_probs=66.6
Q ss_pred cCCcceEEEEEccCCCeEEEEeC-CCcEEEEECCCCeEeee-----eeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQ-----NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~~~~~~-----~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
........+.++|||+++++++. +.++.++|+........ ..-.+.. ....+......+|.+ ++.-..+---
T Consensus 320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a-e~e~GlGPlHt~Fd~-~G~aYTtlfi 397 (638)
T 3sbq_A 320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG-EPELGLGPLHTTFDG-RGNAYTTLFI 397 (638)
T ss_dssp EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE-CCBCCSCEEEEEECS-SSEEEEEETT
T ss_pred eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe-eccCCCcccEEEECC-CCceEeeeee
Confidence 33445677899999999988664 77899999984211000 0000001 111345667889998 6755555558
Q ss_pred CCcEEEEECCccee--------eEEEeeeccCCceEEEEE------ecCCCEEEEEeC
Q 004410 542 DSLVRVLCGENVVG--------KFKASAFRVAGSQMFATF------TSDGKHVVSPSE 585 (755)
Q Consensus 542 Dg~I~iwd~~~~~~--------~~~~~~~~~~~~v~~l~f------spdg~~L~sgs~ 585 (755)
|+.|.-|++..... .......-| ..+-.+.- .+||++|++...
T Consensus 398 dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~-YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 398 DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH-YQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp TTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-SCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred cceEEEEeccHHHHHhcCccCCeeeeccccc-cCCcccccCCCccCCCCccEEEEecc
Confidence 99999999765321 111111112 12222322 578999999753
No 345
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.28 E-value=20 Score=37.62 Aligned_cols=153 Identities=8% Similarity=-0.078 Sum_probs=77.8
Q ss_pred CCEEEEEEcC--CCeEEEEeCCC----cEEEEeCCCCeEEEEEe---------------cCCcEEEEEEeeCC-CCEEEE
Q 004410 389 SEVLDLSWSK--NGFLLSSSADK----TVRLWQVGIDRCLRVFS---------------HNNYVTSVAFNPVD-DNYFIS 446 (755)
Q Consensus 389 ~~V~~l~~s~--~~~L~s~s~Dg----~V~iWdl~s~~~~~~~~---------------h~~~V~~i~fsp~d-~~~l~s 446 (755)
..|.+|++.| .+.|..+...+ .|...+ ..++.-..+. ....|.+|++.|.+ .+.++.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4588899988 44566665555 454432 2222211111 11257889998744 556666
Q ss_pred EeCCCcEEEEEcCCCeEEEecc-------------------CCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEee
Q 004410 447 GSIDGKVRIWEVRRCQVVDYTD-------------------IREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 447 gs~Dg~V~iwdl~~~~~~~~~~-------------------~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
+...+.|...+-....-..... ....+.+|.++|. ...|++++.++.|...+-. ++...
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~ 212 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWK 212 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCE
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCce
Confidence 6666655544322222111110 1235789999983 4567777666555444322 22111
Q ss_pred eeeEEeccc-cc----CCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 507 QNQICLQGK-KK----LPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 507 ~~~~~~~~~-~~----~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.....+... .. .....+..+.+.|.++..|+++...+
T Consensus 213 ~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 213 PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 100000000 00 00235889999996677888877655
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.20 E-value=10 Score=38.62 Aligned_cols=161 Identities=6% Similarity=-0.076 Sum_probs=90.2
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEe----CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCe
Q 004410 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS----IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs----~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~ 484 (755)
..|+..++...+....... . +..|++ +++.|+-.. ....|...++.......+..+.. ..++|+++.
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~--~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD--P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEEEECS--C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTE
T ss_pred CeEEEEeCCCCcceEeecC--C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCE
Confidence 4677778777654333222 1 236777 677776655 34456666776555444444332 456888988
Q ss_pred EEEEeC-CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC--CcEEEEECCcceeeEEEee
Q 004410 485 GIVGTM-TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD--SLVRVLCGENVVGKFKASA 561 (755)
Q Consensus 485 la~gs~-dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D--g~I~iwd~~~~~~~~~~~~ 561 (755)
|+-.+. ...|.+.++.++..... ..+ ... ..+.| ++.+|+-.... ..|..-++........
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~~l----~~~-------~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~~~L--- 222 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEALF----YDC-------NCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPNPVVL--- 222 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEEEE----ECS-------CEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCCCEEC---
T ss_pred EEEEeCCCceEEEEECCCCCEEEE----eCC-------Ccc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCCeEEE---
Confidence 887665 56788888887654321 111 112 23558 56666655443 2455555443322211
Q ss_pred eccCCceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCC
Q 004410 562 FRVAGSQMFATFTSDGKHVVSPSE--DSNIYIWNYSNQD 598 (755)
Q Consensus 562 ~~~~~~v~~l~fspdg~~L~sgs~--Dg~I~iWd~~~~~ 598 (755)
. ...+ ..|+|++++|+-+.. .+.|..-+++...
T Consensus 223 t--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 223 T--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp S--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred e--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 1 1222 348889999887643 3566666666543
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.77 E-value=33 Score=35.85 Aligned_cols=194 Identities=11% Similarity=0.019 Sum_probs=94.7
Q ss_pred CCEEEEEEcC---CCeEEEEeCCCcEEEEeCCCCeEEEEEe--------------------cCCcEEEEEEeeCCCCEEE
Q 004410 389 SEVLDLSWSK---NGFLLSSSADKTVRLWQVGIDRCLRVFS--------------------HNNYVTSVAFNPVDDNYFI 445 (755)
Q Consensus 389 ~~V~~l~~s~---~~~L~s~s~Dg~V~iWdl~s~~~~~~~~--------------------h~~~V~~i~fsp~d~~~l~ 445 (755)
..|.+|++.| .+.|..+...+.|...+-. ++.-..+. ....|.+|.++|.+.+.++
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 3577788875 3466666666666555322 22111111 1245889999884455555
Q ss_pred EEeCCCcEEEEEcCCCeEEEecc-C------------CcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 446 SGSIDGKVRIWEVRRCQVVDYTD-I------------REIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 446 sgs~Dg~V~iwdl~~~~~~~~~~-~------------~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
.+..++.|...+-....-..... . ...+.+|.++|+ ...|++++..+ |...+-....- ....
T Consensus 194 vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~tW-~~~~-- 269 (394)
T 3b7f_A 194 IGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGVW-KRIG-- 269 (394)
T ss_dssp EEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTEE-ECGG--
T ss_pred EEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCcc-eECC--
Confidence 55544544443222111111110 0 134889999985 46677776544 54444332222 1110
Q ss_pred ecccccCCC---CCeEEEEEcCCCCCEEEEEEC-----------CCcEEEEECCcceeeEEEeeeccCC-------ceEE
Q 004410 512 LQGKKKLPG---KRITGFQFSPSDPSKVIVTSA-----------DSLVRVLCGENVVGKFKASAFRVAG-------SQMF 570 (755)
Q Consensus 512 ~~~~~~~~~---~~I~~v~fsp~d~~~l~s~s~-----------Dg~I~iwd~~~~~~~~~~~~~~~~~-------~v~~ 570 (755)
..... ..+..+.+.|.+...|+++.. ++...||...+.-..+......... ....
T Consensus 270 ----~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~ 345 (394)
T 3b7f_A 270 ----DAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQA 345 (394)
T ss_dssp ----GGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBS
T ss_pred ----CCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEE
Confidence 00111 345678888866666666542 3334566544432222221111111 1135
Q ss_pred EEEecC-CCEEEEEeCCCcEEE
Q 004410 571 ATFTSD-GKHVVSPSEDSNIYI 591 (755)
Q Consensus 571 l~fspd-g~~L~sgs~Dg~I~i 591 (755)
++++|. ...|+.++.++.|+.
T Consensus 346 ~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 346 MTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp EEECCSSSCCEEEECTTSCEEE
T ss_pred EEECCCCCCEEEEEeCCCeEEE
Confidence 777774 345666665665543
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.56 E-value=10 Score=41.26 Aligned_cols=116 Identities=8% Similarity=0.018 Sum_probs=64.1
Q ss_pred cceEEEEEccCCC-eEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc-----CCCCCeEEEEEcCC---CCCEEEEEEC
Q 004410 471 EIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK-----LPGKRITGFQFSPS---DPSKVIVTSA 541 (755)
Q Consensus 471 ~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~-----~~~~~I~~v~fsp~---d~~~l~s~s~ 541 (755)
.....|+|.|||. .|+++...|.|++++......... ...+..... .....+..|+|+|+ ++.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~-~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEP-YLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSC-SEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeee-ecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 4567899999996 677778899999997543321111 111111111 12467889999993 2344443332
Q ss_pred C------------CcEEEEECCc----------ceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 542 D------------SLVRVLCGEN----------VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 542 D------------g~I~iwd~~~----------~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
+ ..|.-|.... ....+.............++|.|||.+.++.++.+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1333344321 11122221112234567899999998888776543
No 349
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=84.52 E-value=18 Score=44.52 Aligned_cols=240 Identities=11% Similarity=0.183 Sum_probs=125.6
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe-ee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-RL 319 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~-~~ 319 (755)
+..+|..+.+|.-. ..++.|+++....+.-+ .. -...|.-=+|-.+ +.|+-.+ +..|.-|++.... ..
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks-~~-------~~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~ 139 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKA-HT-------MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPV 139 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcc-cc-------cCCCceEEEecCC-CeeEEEc-CCeEEEeccCCCCccH
Confidence 56778888777765 67899999876554211 11 1235666677543 3444444 3579999996422 22
Q ss_pred eeeecCC--CCCceeEEeeCCCCceeEE-eecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 320 DGFDVQD--TDPSCLYFTINHLSQLIPI-DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 320 ~~~~~~~--~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+.+..+. .....+.+..+.......+ +.... .+.-.+.+- .+....+.-+.+.||.+....+..
T Consensus 140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~--------~~~v~G~mQ-----LyS~er~~sQ~iegha~~F~~~~~ 206 (1630)
T 1xi4_A 140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ--------QNRVVGAMQ-----LYSVDRKVSQPIEGHAASFAQFKM 206 (1630)
T ss_pred HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccC--------CCcccceee-----eeecccccchhhhHhHhhhheecc
Confidence 2222111 1111222222222211111 11000 001111222 222223334455677655544443
Q ss_pred cCC--C-eEEE-EeC---CCcEEEEeCCCC---------eEEEEE-e---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 397 SKN--G-FLLS-SSA---DKTVRLWQVGID---------RCLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 397 s~~--~-~L~s-~s~---Dg~V~iWdl~s~---------~~~~~~-~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
..+ . .|++ +.. .+.++|-++... +.+..+ . ..+...++..++ ....+..-+.-|.|.+|
T Consensus 207 ~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~ 285 (1630)
T 1xi4_A 207 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLY 285 (1630)
T ss_pred CCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEE
Confidence 211 1 2322 221 268888888543 111111 1 355667888888 77788888899999999
Q ss_pred EcCCCeEEEec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 457 EVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 457 dl~~~~~~~~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
|+.++.++... -....|...+.+.....++.....|.|.-..+....++
T Consensus 286 d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 286 DLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred ecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 99999888433 23445555555555556666667887777766665554
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=84.35 E-value=12 Score=43.07 Aligned_cols=151 Identities=14% Similarity=0.118 Sum_probs=84.5
Q ss_pred CC-eEEEEeCC------CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEEcCCCeEEEec
Q 004410 399 NG-FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG--KVRIWEVRRCQVVDYT 467 (755)
Q Consensus 399 ~~-~L~s~s~D------g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg--~V~iwdl~~~~~~~~~ 467 (755)
++ .++.|+.+ ..+.+||..+.+....-. ....-.+++... ++.+++.|+.++ .+.+||..+..-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 45 55666543 358899998876554322 111222333323 678888888765 6999999987755433
Q ss_pred c------CCcceEEEEEccC-CCeEEEEeC--C-----CcEEEEECCCCeE-----eeeeeEEecccccCCCCCeEEEEE
Q 004410 468 D------IREIVSAVCYCPD-GKGGIVGTM--T-----GNCRFYDIKDNQL-----YQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 468 ~------~~~~V~~v~~spd-g~~la~gs~--d-----g~I~iwD~~~~~~-----~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
. ......++.+..+ ++.++.|+. + ..+.+||+.++.- ..... ... .........+.+
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~-~~p---~~~R~~~~~~~~ 605 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKL-QHP---LFQRYGSQIKYI 605 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEE-ECG---GGCCBSCEEEEE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcC-CCC---CCCcccceEEEe
Confidence 2 1222334556555 667777765 2 3589999988762 11110 000 011112223333
Q ss_pred cCCCCCEEEEEEC--------CCcEEEEECCcceee
Q 004410 529 SPSDPSKVIVTSA--------DSLVRVLCGENVVGK 556 (755)
Q Consensus 529 sp~d~~~l~s~s~--------Dg~I~iwd~~~~~~~ 556 (755)
. ++.+++.|+. ...|.+||..+....
T Consensus 606 ~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 606 T--PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp E--TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred C--CCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 2 3677777774 356889998765443
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=83.75 E-value=39 Score=34.09 Aligned_cols=171 Identities=11% Similarity=0.043 Sum_probs=89.3
Q ss_pred EEcCCC-eEEEEe----CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCCCeEEEecc
Q 004410 395 SWSKNG-FLLSSS----ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 395 ~~s~~~-~L~s~s----~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~~~~~~~~~ 468 (755)
.|++++ .|+-.. ....|...++......+...+.. ..++| +++.|+-.+. ...|.+.++..+....+..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~ 184 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNT-SDRYFYYNNPKNGQLYRYDTASQSEALFYD 184 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEE-ETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeE-ECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence 455555 555444 34456666776554444444432 45677 6666665554 6788888888776554432
Q ss_pred CCcceEEEEEccCCCeEEEEeCCC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC--CCc
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA--DSL 544 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~--Dg~ 544 (755)
+.. ...+.|++.+|+-....+ .|..-++.+..... + ....+. .|+| ++.+|+-+.. .+.
T Consensus 185 --~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~-----L------t~~~~~--~~~~-~g~~Iy~~~~~~~~~ 247 (302)
T 3s25_A 185 --CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV-----L------TEANIE--HYNV-YGSLIFYQRGGDNPA 247 (302)
T ss_dssp --SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE-----C------SCSCEE--EEEE-ETTEEEEEECSSSCE
T ss_pred --CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE-----E------eCCCcc--eEEE-CCCEEEEEECCCCcE
Confidence 222 234669998888766543 56666776654322 1 112232 3667 5566665432 345
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEc
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNY 594 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~ 594 (755)
|...++......... .. .+. .+++.+.+|+-.. ..+.|+.-++
T Consensus 248 i~~~~~DG~~r~~l~--~~---~~~--~i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 248 LCVVKNDGTGFKELA--KG---EFC--NINVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp EEEEETTSCCCEEEE--ES---CEE--EEEECSSEEEEEETTTCCEEEEES
T ss_pred EEEEECCCCccEEee--CC---ccc--eEEEeCCEEEEEECCCCeEEEEEC
Confidence 555555432222111 11 122 3455666666554 3344444443
No 352
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=83.25 E-value=48 Score=34.72 Aligned_cols=170 Identities=7% Similarity=0.047 Sum_probs=95.6
Q ss_pred cEEEEeCCCC--eEEEEEe-------cCCcEEEEEEeeC--C----CCEEEE-EeCCCcEEEEEcCCCeEEEecc----C
Q 004410 410 TVRLWQVGID--RCLRVFS-------HNNYVTSVAFNPV--D----DNYFIS-GSIDGKVRIWEVRRCQVVDYTD----I 469 (755)
Q Consensus 410 ~V~iWdl~s~--~~~~~~~-------h~~~V~~i~fsp~--d----~~~l~s-gs~Dg~V~iwdl~~~~~~~~~~----~ 469 (755)
.|.+||+.++ +.++.+. ....+..+.+... + +.+++. =+..+-|.|+|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778999999 8888874 3456888998821 1 334333 3346789999999887654331 0
Q ss_pred ---------------CcceEEEEEccC----CCeEEEEeCCCcEEEEECC-----CCeEeeeeeEEecccccCCCCCeEE
Q 004410 470 ---------------REIVSAVCYCPD----GKGGIVGTMTGNCRFYDIK-----DNQLYQQNQICLQGKKKLPGKRITG 525 (755)
Q Consensus 470 ---------------~~~V~~v~~spd----g~~la~gs~dg~I~iwD~~-----~~~~~~~~~~~~~~~~~~~~~~I~~ 525 (755)
...+..|+++|+ ++.|.-....+. ++|.+. ..... ..+...+.+ .....-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~--~~v~~~G~k-g~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGK--LNPELLGNR-GKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCC--CCCEEEEEC-CTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchh--hceEEeeec-CCCCCcce
Confidence 135777888887 666666555442 233322 11111 111112211 11234455
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCc-ce--eeEEEee-eccCCceEEEEEecCCCEEEEE
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGEN-VV--GKFKASA-FRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~-~~--~~~~~~~-~~~~~~v~~l~fspdg~~L~sg 583 (755)
+++.+.++.++++--..+.|..|+... .. ..+.... ...-.....+.+..+|.+.+..
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 667643677777778888999999765 21 1111100 1122345667766666554444
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=83.18 E-value=55 Score=35.33 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=35.6
Q ss_pred eccCcceeecCCCC-eeEEeeCCCeEEEEECCCCc--ccccccccceeee----cccccEEEEEEecC
Q 004410 235 IDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQS--RELSSLYTGQEFL----AHEGSILTMKFSLD 295 (755)
Q Consensus 235 ~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~--~~~~~~~~~~~l~----~H~~~V~~l~fspd 295 (755)
.+....++|.|+|. .|+++...|+|++++..... ..+..+... ... +..+....|+|+|+
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~-~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKL-VQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTT-BCCCCSSSCCCSEEEEEECTT
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcce-eccCccccCCCcceeeEeCCC
Confidence 34445699999996 55666788999999754221 111111100 011 12467889999996
No 354
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=83.12 E-value=39 Score=33.62 Aligned_cols=203 Identities=11% Similarity=0.073 Sum_probs=116.9
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEE---eCCCCeEEEEEecCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCCe--
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLW---QVGIDRCLRVFSHNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQ-- 462 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iW---dl~s~~~~~~~~h~~~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~~-- 462 (755)
.+..+.-.... +|+..+.+|.++-- ++........+.....|..+.. +. ++.+++..+.+|.++-..+..-.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 34444433333 67777777776643 3322211101555667777754 32 46789999999999998876532
Q ss_pred ---EE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 463 ---VV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 463 ---~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
.. .+. ..+.+..+........++..+..|.+..+....-........-.....-..+..|..+...+ +...++
T Consensus 104 ~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~-~~~~ll 181 (276)
T 3no0_A 104 AQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN-GEPYLL 181 (276)
T ss_dssp STTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES-SCSEEE
T ss_pred cCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC-CCCEEE
Confidence 11 122 23456566666666789999999999888765322110000000011112345677666555 566889
Q ss_pred EEECCCcEEEEECCcceee------EEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEE--EEcCCC
Q 004410 538 VTSADSLVRVLCGENVVGK------FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYI--WNYSNQ 597 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~~~~~------~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~i--Wd~~~~ 597 (755)
..+..|.++.....+.... ... ....+.+..+....+...|+..+.+|.+.. ++.+.-
T Consensus 182 ~~T~~G~~kr~~~~e~~~~~R~gkGv~~--i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 182 VITAKGRVKKISHEEIPKTNRGVKGTEV--SGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEETTSCEEEEEGGGSCCCCTTCCCEEC--CCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EEeCCCcEEEeEHHHcccCCCCCcceEE--EcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 9999999998886543211 111 123345555544444567788888899888 887543
No 355
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=80.63 E-value=58 Score=33.93 Aligned_cols=197 Identities=10% Similarity=0.090 Sum_probs=114.4
Q ss_pred CCC-eEEEEeCCCcEEEEeCCC---------CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc---CC----
Q 004410 398 KNG-FLLSSSADKTVRLWQVGI---------DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV---RR---- 460 (755)
Q Consensus 398 ~~~-~L~s~s~Dg~V~iWdl~s---------~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl---~~---- 460 (755)
++. .+++.+.+|.|+--.+.. +.....+...+.+..+.... ..+.++..+..|.++.+.. +.
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 445 888899999999764321 23334445677888777776 6677777788888766543 32
Q ss_pred --CeEE-Ee--ccCCcceEEEEEcc---CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 461 --CQVV-DY--TDIREIVSAVCYCP---DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 461 --~~~~-~~--~~~~~~V~~v~~sp---dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+..+ .+ ....+.|.++..-. ++.+|+.++..|.++.-.+..-......-+... ... .+..+..+.... +
T Consensus 84 a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai-~L~-~~d~lv~v~~~~-~ 160 (370)
T 3l6v_A 84 ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAI-NLD-EGDALVGVALTD-G 160 (370)
T ss_dssp SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESS-CCC-TTCCEEEEEEEC-S
T ss_pred cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEE-EeC-CCCEEEEEEEeC-C
Confidence 2211 11 12234555554332 456899999999999888654322110000000 011 234555555544 5
Q ss_pred CCEEEEEECCCcEEEEECCccee------eEEEeeeccCCceEEEEEec-------------------------------
Q 004410 533 PSKVIVTSADSLVRVLCGENVVG------KFKASAFRVAGSQMFATFTS------------------------------- 575 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~------~~~~~~~~~~~~v~~l~fsp------------------------------- 575 (755)
...|+..+.+|.+..+....... -.+.........|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 56788888899888887554211 11111122334555555443
Q ss_pred ----CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 576 ----DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 576 ----dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++.+|++.+..|..+...+..-.
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~ 267 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYP 267 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSC
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhc
Confidence 45689999999999999886543
No 356
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=79.67 E-value=56 Score=33.13 Aligned_cols=191 Identities=11% Similarity=0.042 Sum_probs=114.2
Q ss_pred eEEEEeCCCcEEEEeCCCCe-------EE--EEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-------
Q 004410 401 FLLSSSADKTVRLWQVGIDR-------CL--RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV------- 464 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~-------~~--~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~------- 464 (755)
.+++.+.+|.|+--.+..-+ -+ ..+...+.+..+.... ..+.++..+..|.++-.....-...
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~ 88 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRASKGQ 88 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC-------C
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCccCCCc
Confidence 78888999999887654321 11 1223556676666666 6677888888998777665321111
Q ss_pred ------EeccCCcceEEEEEcc---CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 465 ------DYTDIREIVSAVCYCP---DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 465 ------~~~~~~~~V~~v~~sp---dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
.+ ...+.|.++...+ +..+|+..+..|.++...+..-......-... ..-..+..+..+.... +...
T Consensus 89 ~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~--i~L~~~d~lv~~~~~~-~~~~ 164 (312)
T 1suu_A 89 NISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIV--IKLNDKDFVTSAEIVF-KDEK 164 (312)
T ss_dssp BGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEEC--BCCCTTCCEEEEEEEC-TTCE
T ss_pred ChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEE--EecCCCCEEEEEEEeC-CCCE
Confidence 11 1223455544333 46788899999999988875432211000001 1111245566665554 5568
Q ss_pred EEEEECCCcEEEEECCccee------eEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 536 VIVTSADSLVRVLCGENVVG------KFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~~~------~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
++..+.+|.+..+...+... -...........|..+..-.++..|++.+..|..+..++..
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 88999999999988665211 11111122344566666656677888999999999998864
No 357
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=79.19 E-value=53 Score=32.62 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=60.7
Q ss_pred eEEEEeCCCcEEEEeCC---------CCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe--------E
Q 004410 401 FLLSSSADKTVRLWQVG---------IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--------V 463 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~---------s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~--------~ 463 (755)
.++..+..|.+..+.+. .|.....+.....|..+...+ ++..++..+..|.++...+..-. .
T Consensus 129 ~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~-~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv 207 (276)
T 3no0_A 129 HILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN-GEPYLLVITAKGRVKKISHEEIPKTNRGVKGT 207 (276)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES-SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCE
T ss_pred EEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC-CCCEEEEEeCCCcEEEeEHHHcccCCCCCcce
Confidence 67777777877777542 122222234556777776665 66788899999999988875321 2
Q ss_pred EEeccCCcceEEEEEccCCCeEEEEeCCCcEEE--EECCC
Q 004410 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF--YDIKD 501 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~i--wD~~~ 501 (755)
... ...+.+..+....+...++..+.+|.+.. ++...
T Consensus 208 ~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 208 EVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp ECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 222 23344444433334456777788888877 77654
No 358
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=75.65 E-value=74 Score=32.41 Aligned_cols=199 Identities=12% Similarity=0.098 Sum_probs=109.0
Q ss_pred cCCCeEEEEeCCCcEEEEeC---C------CCeEEEE---EecCCcEEEEEEeeC--CCCEEEEEeCCCcEEEEEcCCC-
Q 004410 397 SKNGFLLSSSADKTVRLWQV---G------IDRCLRV---FSHNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRC- 461 (755)
Q Consensus 397 s~~~~L~s~s~Dg~V~iWdl---~------s~~~~~~---~~h~~~V~~i~fsp~--d~~~l~sgs~Dg~V~iwdl~~~- 461 (755)
+....|+..+..|.++-... . .|..+.. +.....|..+...+. ++.+++..+.+|.++-..+..-
T Consensus 48 ~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~ 127 (323)
T 1wp5_A 48 NTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYK 127 (323)
T ss_dssp ETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGC
T ss_pred CCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhh
Confidence 33447777888888666543 2 2332211 234455666544331 2568899999999999887421
Q ss_pred ------eEE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 462 ------QVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 462 ------~~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
-.. .+.. .+.+..+........|+..+.+|.+..+....-........-.....-..+..|.++...+.+.
T Consensus 128 ~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~ 206 (323)
T 1wp5_A 128 AQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKD 206 (323)
T ss_dssp CSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTT
T ss_pred hccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCC
Confidence 111 2222 2455555555556678889999999888875422111000001111112345566665544233
Q ss_pred CEEEEEECCCcEEEEECCccee-------eEEEeee-ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVG-------KFKASAF-RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~-------~~~~~~~-~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
..+++.+..|..+..+...... ....... .....+..+....++..|+..+..|.+...+++.
T Consensus 207 ~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 207 ESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred cEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 3788889999888877655211 1111001 1222454443334456677777888877777654
No 359
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=74.45 E-value=56 Score=37.99 Aligned_cols=162 Identities=9% Similarity=0.120 Sum_probs=84.1
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccC-------CcceEEEEEccC-CCeEEEEeCCCc----E
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-------REIVSAVCYCPD-GKGGIVGTMTGN----C 494 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~-------~~~V~~v~~spd-g~~la~gs~dg~----I 494 (755)
....|.+|+++|.+...++.+...+.|...+=....-...... ...+.+|+++|. ...++++..... -
T Consensus 13 ~~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 13 GGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 3468999999997678888888777776554332222222221 236999999984 345555543321 3
Q ss_pred EEEE-CCCCeEeeeeeEEecccc-cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeee-----ccCCc
Q 004410 495 RFYD-IKDNQLYQQNQICLQGKK-KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF-----RVAGS 567 (755)
Q Consensus 495 ~iwD-~~~~~~~~~~~~~~~~~~-~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-----~~~~~ 567 (755)
.||- ...++.-......+.... ......+..++++|.++..++++...+.| |...+.-..+..... .....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCCC
Confidence 3443 334443332211000000 00111356788888667777777644443 332222222221100 11245
Q ss_pred eEEEEEecC-CCEEEEEeCC-CcEE
Q 004410 568 QMFATFTSD-GKHVVSPSED-SNIY 590 (755)
Q Consensus 568 v~~l~fspd-g~~L~sgs~D-g~I~ 590 (755)
+..+.+.|. +..|+.+..+ +.|+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEEECTTSTTCEEEEESSTTCEE
T ss_pred eEEEEECCCCCCEEEEEEcCCCeEE
Confidence 778888874 4566666655 4443
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=74.22 E-value=81 Score=32.19 Aligned_cols=195 Identities=11% Similarity=0.126 Sum_probs=113.6
Q ss_pred eEEEEeCCCcEEEE---eCC------CCeEEEE---EecCCcEEEEEEeeC--CCCEEEEEeCCCcEEEEEcCCCe----
Q 004410 401 FLLSSSADKTVRLW---QVG------IDRCLRV---FSHNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQ---- 462 (755)
Q Consensus 401 ~L~s~s~Dg~V~iW---dl~------s~~~~~~---~~h~~~V~~i~fsp~--d~~~l~sgs~Dg~V~iwdl~~~~---- 462 (755)
.|+..+..|.++-. ++. .|..+.. +.....|..+...+. +..+++..+.+|.|+-..+....
T Consensus 55 ~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r 134 (327)
T 3uc1_A 55 LILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS 134 (327)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS
T ss_pred EEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc
Confidence 66666667765544 333 2333211 234556666654431 46799999999999998875422
Q ss_pred --EE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 463 --VV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 463 --~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
.. .+.. .+.+..+........|+..+..|.+..+... .-........-.....-..+..|.++...+ ....+
T Consensus 135 ~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~l 212 (327)
T 3uc1_A 135 GGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYL 212 (327)
T ss_dssp SCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEE
T ss_pred CceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEE
Confidence 11 2222 3445555555566788889999999888876 322110000000011112345677777766 55689
Q ss_pred EEEECCCcEEEEECCcceee------EEE-eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 537 IVTSADSLVRVLCGENVVGK------FKA-SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~------~~~-~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+..+..|.++.-.+...... ... ......+.+..+....+...|+..+.+|.+.-++...-
T Consensus 213 l~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 213 LVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred EEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 99999999998876543221 111 11111344555555555667888888888888887643
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.90 E-value=1.5e+02 Score=35.16 Aligned_cols=38 Identities=11% Similarity=0.344 Sum_probs=32.8
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS 426 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~ 426 (755)
..+.+++..++. ++++.+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357778887776 99999999999999999999988764
No 362
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=73.57 E-value=1.7 Score=29.25 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=16.5
Q ss_pred CCcccccccccccccccccCC
Q 004410 4 VSNEEEEEQFFDTCEEISYVS 24 (755)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (755)
.|+|+||-+||||-+=|....
T Consensus 12 ~SdEDed~EfFDA~efITv~~ 32 (47)
T 2rr3_B 12 MSDEDDENEFFDAPEIITMPE 32 (47)
T ss_dssp SCCCCCSSCCBCCCSSCSSCS
T ss_pred ccccccccccccccceeEccC
Confidence 577888999999988666543
No 363
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=72.11 E-value=86 Score=31.59 Aligned_cols=196 Identities=10% Similarity=0.074 Sum_probs=108.6
Q ss_pred CCeEEEEeCCCcEEEEeC---C------CCeEEE---EEecCCcEEEEEEee--CCCCEEEEEeCCCcEEEEEcCCC---
Q 004410 399 NGFLLSSSADKTVRLWQV---G------IDRCLR---VFSHNNYVTSVAFNP--VDDNYFISGSIDGKVRIWEVRRC--- 461 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl---~------s~~~~~---~~~h~~~V~~i~fsp--~d~~~l~sgs~Dg~V~iwdl~~~--- 461 (755)
...|+..+..|.++-... . .|..+. .+.....|..+...+ .++.+++..+.+|.++-..+..-
T Consensus 53 ~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~ 132 (307)
T 1zi0_A 53 HDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 132 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTC
T ss_pred CCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcc
Confidence 336677777777655543 2 233221 133455676665432 14668899999999999877421
Q ss_pred ---eEE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 462 ---QVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 462 ---~~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
-.. .+... +.+..+....+...|+..+.+|.+..++...-........-.....-..+..|.++.... +...+
T Consensus 133 ~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~l 210 (307)
T 1zi0_A 133 RTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPR-GDGAI 210 (307)
T ss_dssp CTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCC-SSCEE
T ss_pred ccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEec-CCCEE
Confidence 111 23333 455555555555678888999998888775422211000000111112345677766554 45678
Q ss_pred EEEECCCcEEEEECCcceee------EEE-eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 537 IVTSADSLVRVLCGENVVGK------FKA-SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~------~~~-~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
++.+..|.++-.++...... ... ......+.+..+....+...|+..+.+|.+.-.++..
T Consensus 211 l~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 211 LTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 88899999988876543211 111 1111224555544444456667777778777777654
No 364
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=67.47 E-value=1.8e+02 Score=33.34 Aligned_cols=193 Identities=13% Similarity=0.099 Sum_probs=94.5
Q ss_pred CEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEec-------CCcEEEEEEeeCCCCEEEEEeCC-------CcE
Q 004410 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSH-------NNYVTSVAFNPVDDNYFISGSID-------GKV 453 (755)
Q Consensus 390 ~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h-------~~~V~~i~fsp~d~~~l~sgs~D-------g~V 453 (755)
.|..|+++|.+ .++.+...+.|..++-....-.....+ ...|.+|+++|.+.+.++.+... +..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~ 103 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMG 103 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCc
Confidence 78999999975 677777677777776443333332221 24599999999655555554421 124
Q ss_pred EEEEcCC-C---eEEEeccC-------CcceEEEEEccC-CCeEEEEeCCCcEEEEE-CCCCeEeeeeeEEeccc-----
Q 004410 454 RIWEVRR-C---QVVDYTDI-------REIVSAVCYCPD-GKGGIVGTMTGNCRFYD-IKDNQLYQQNQICLQGK----- 515 (755)
Q Consensus 454 ~iwdl~~-~---~~~~~~~~-------~~~V~~v~~spd-g~~la~gs~dg~I~iwD-~~~~~~~~~~~~~~~~~----- 515 (755)
.||--.+ + +.+..... ...+..|+++|. ...|+++...|. -||- ...++.-.... .+...
T Consensus 104 ~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~-gl~~S~DgG~tW~~~~-~~~~~~~~~~ 181 (737)
T 2cn3_A 104 AILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGN-GLWRSTDYGVTWSKVE-SFPNPGTYIY 181 (737)
T ss_dssp EEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTC-CEEEESSTTSSCEECT-TCCCCCCCBS
T ss_pred cEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCC-cEEEeCCCCcceeccc-CCCCCccccc
Confidence 4454332 2 22221110 113467999984 466777664322 2333 33232211110 00000
Q ss_pred -----ccCCCCCeEEEEEcCCCC------CEEEEEECCCcEEEEECCcceeeEEEee-eccCCceEEEEEecCCCEEEEE
Q 004410 516 -----KKLPGKRITGFQFSPSDP------SKVIVTSADSLVRVLCGENVVGKFKASA-FRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 516 -----~~~~~~~I~~v~fsp~d~------~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~~v~~l~fspdg~~L~sg 583 (755)
.......++.+.+.|.+. ..|+++..++.-.||...+.-..+.... .........+.++|++.++++.
T Consensus 182 ~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~~~~~~~~~~~~~~~l~~~~ 261 (737)
T 2cn3_A 182 DPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLASNGMLYITY 261 (737)
T ss_dssp CTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCCSSEEEEEEECTTSEEEEEE
T ss_pred CcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCCcccceEEEECCCCeEEEEe
Confidence 001123477888887543 2666666554323444333222232211 0111112345677777666654
Q ss_pred e
Q 004410 584 S 584 (755)
Q Consensus 584 s 584 (755)
.
T Consensus 262 ~ 262 (737)
T 2cn3_A 262 G 262 (737)
T ss_dssp E
T ss_pred c
Confidence 3
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=65.17 E-value=1.2e+02 Score=30.53 Aligned_cols=192 Identities=10% Similarity=0.120 Sum_probs=107.6
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEE---------EEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc---CC------Ce
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLR---------VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV---RR------CQ 462 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~---------~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl---~~------~~ 462 (755)
.+++.+.+|.|+--.+...+..+ .+...+.+..+.... ..+.++..+..|.++-+.. +. +.
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~ 83 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRGARGR 83 (307)
T ss_dssp EEEEEETTSEEEEEECC--------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSSSCCE
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCCCCCe
Confidence 67888889998877665432211 123456666666665 6677777788888666554 32 22
Q ss_pred EE-Ee--ccCCcceEEEEEc---cCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 463 VV-DY--TDIREIVSAVCYC---PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 463 ~~-~~--~~~~~~V~~v~~s---pdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
.+ .. ....+.|.++..- .++.+++..+.+|.++--.+..-......-.... ... ....+..+.... +...|
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i-~l~-~~d~lv~~~~~~-~~~~i 160 (307)
T 1zi0_A 84 PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAI-KLV-DGDELIGVDLTS-GEDEV 160 (307)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESS-CCC-TTCCEEEEEEEC-TTCEE
T ss_pred EhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEE-EEC-CCCEEEEEEEeC-CCCEE
Confidence 11 01 1233456555432 3566899999999999887753221110000000 011 224555555554 45678
Q ss_pred EEEECCCcEEEEECCcceee------EEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 537 IVTSADSLVRVLCGENVVGK------FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~------~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
+..+.+|.+..+...+.... ...........|.++....++..|++.+..|.++-.++..
T Consensus 161 ~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 88889998888876543211 1111122345666666555667889999999999888743
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.11 E-value=33 Score=40.97 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=35.0
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
..|.++...++..+|+|-+.|+++|||++.+++++.+...
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3678888888999999999999999999999998877654
No 367
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=62.38 E-value=1.3e+02 Score=29.84 Aligned_cols=183 Identities=12% Similarity=-0.016 Sum_probs=96.0
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEE-EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC-eEEEec
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYT 467 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~-~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-~~~~~~ 467 (755)
.|..++......++. . ||.|+.|-....-.+-. ......|..|+... ...+.-. ||.|+.|-.... ++-...
T Consensus 64 ~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 566666654443333 4 89999996543211111 11234677777654 3444445 999999976542 221111
Q ss_pred cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
.....|..|+...+ ..++-+ +|.|+.|-......+. . .......|..++... ...++- .||.|..
T Consensus 138 ~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg-----~---p~~~~~~v~~i~~G~---~hs~al-~~G~v~~ 202 (282)
T 3qhy_B 138 EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTT-----V---PAEAQSGVDDVAGGI---FHSLAL-KDGKVIA 202 (282)
T ss_dssp GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTS-----C---CGGGGSSEEEEEECS---SEEEEE-ETTEEEE
T ss_pred cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCC-----C---ceecCCCeEEEEecC---CEEEEE-ECCeEEE
Confidence 22345666665433 233334 7999999765422111 0 001124577777643 333333 5999999
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|-.....+.-.. ......|..++...... ++.. ||.|+.|-.+...
T Consensus 203 wG~n~~gqlg~p--~~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~~g 248 (282)
T 3qhy_B 203 WGDNRYKQTTVP--TEALSGVSAIASGEWYS-LALK--NGKVIAWGSSRTA 248 (282)
T ss_dssp EECCTTSTTCCC--GGGGSSCCEEEECSSCE-EEEE--TTEEEEESTTCCC
T ss_pred EECCCCCCCCCC--cccCCCceEEEcCCCEE-EEEE--CCEEEEecCCCCc
Confidence 975542111100 12223566666544333 3333 9999999766543
No 368
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=60.29 E-value=1.6e+02 Score=30.46 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=104.5
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCC---------C-eE-EEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGI---------D-RC-LRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s---------~-~~-~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
+..++.+... +.+....||.|+.|-... . .. ...+. ....|..|+. .....+.-..||.|+.|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEe
Confidence 3344554444 666677889999995321 0 11 11111 2235666664 44666667789999999
Q ss_pred EcCCC----------e--EEEecc-CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCC-eE------eeeeeEEecccc
Q 004410 457 EVRRC----------Q--VVDYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN-QL------YQQNQICLQGKK 516 (755)
Q Consensus 457 dl~~~----------~--~~~~~~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~-~~------~~~~~~~~~~~~ 516 (755)
-.... . ...... ....|..++........++-..+|.|+.|-.... ++ .......+ .
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v---~ 260 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKI---D 260 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEEC---G
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEe---c
Confidence 75321 1 111111 2234666665443356667788999999964321 10 00001111 1
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce--------eeEEEeeec--cCCceEEEEEecCCCEEEEEeCC
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV--------GKFKASAFR--VAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~--------~~~~~~~~~--~~~~v~~l~fspdg~~L~sgs~D 586 (755)
......|..++.. ....++-..+|.|..|-..... ......... ....|..++. ...+.+.-..|
T Consensus 261 ~~~~~~v~~v~~G---~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~ 335 (389)
T 3kci_A 261 SLTGLGVVKVECG---SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTED 335 (389)
T ss_dssp GGTTSCEEEEEEE---TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETT
T ss_pred ccCCCcEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCC
Confidence 1223356666653 3566666889999999754310 011110011 1124555544 34556666889
Q ss_pred CcEEEEEcCCC
Q 004410 587 SNIYIWNYSNQ 597 (755)
Q Consensus 587 g~I~iWd~~~~ 597 (755)
|.|+.|=.+..
T Consensus 336 G~v~~wG~n~~ 346 (389)
T 3kci_A 336 GEVYTWGDNDE 346 (389)
T ss_dssp CCEEEEECCTT
T ss_pred CCEEEeeCCCC
Confidence 99999987653
No 369
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=59.13 E-value=22 Score=39.23 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=69.8
Q ss_pred CEEEEEEcCCC-e-EEEEeCCCcEEEEeCCC------CeE-------EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 390 EVLDLSWSKNG-F-LLSSSADKTVRLWQVGI------DRC-------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 390 ~V~~l~~s~~~-~-L~s~s~Dg~V~iWdl~s------~~~-------~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
....+..+||| + ++++--+.+|.++|++. ++. .......-.....+|.+ +++...+...|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceEE
Confidence 34568889999 4 44555788999999873 111 22223455678889999 887777778999999
Q ss_pred EEEcCCC----------eEEEeccCCcceEEEEE------ccCCCeEEEEeC
Q 004410 455 IWEVRRC----------QVVDYTDIREIVSAVCY------CPDGKGGIVGTM 490 (755)
Q Consensus 455 iwdl~~~----------~~~~~~~~~~~V~~v~~------spdg~~la~gs~ 490 (755)
-|++... .+++..+.+..+-.+.- .|||++|++...
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 9999753 45555555555555554 579999998754
No 370
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=59.13 E-value=1.9e+02 Score=33.29 Aligned_cols=159 Identities=8% Similarity=0.057 Sum_probs=79.0
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc------------CCcceEEEEEcc-CCCeEEEEeCC--
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD------------IREIVSAVCYCP-DGKGGIVGTMT-- 491 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~------------~~~~V~~v~~sp-dg~~la~gs~d-- 491 (755)
..+.|.+|+++|.+.+.++.+...|.|...+=....-..... ....+.+|+++| +...++++...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~ 98 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYV 98 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCT
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccc
Confidence 567899999999777888888777766544322222122111 123589999998 44555554432
Q ss_pred ---CcEEEEE-CCCCeEeeeeeEEecccccCCCC-CeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee-e---
Q 004410 492 ---GNCRFYD-IKDNQLYQQNQICLQGKKKLPGK-RITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA-F--- 562 (755)
Q Consensus 492 ---g~I~iwD-~~~~~~~~~~~~~~~~~~~~~~~-~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~--- 562 (755)
....||- ...++.-................ ....++++|.+...++++...+.|. ...+.-..+.... .
T Consensus 99 ~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~--~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 99 QWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW--RSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE--EESSTTSSCEECTTSCCC
T ss_pred cCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE--EECCCCcCccccccCccc
Confidence 1234443 33343322211100000000111 1246889987777777776554333 3222222222110 0
Q ss_pred -ccCCceEEEEEecCC-CEEEEEeCCC
Q 004410 563 -RVAGSQMFATFTSDG-KHVVSPSEDS 587 (755)
Q Consensus 563 -~~~~~v~~l~fspdg-~~L~sgs~Dg 587 (755)
.....+..++++|.. ..|+.+..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 011346788888753 4455565555
No 371
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=59.12 E-value=2.5e+02 Score=32.33 Aligned_cols=154 Identities=11% Similarity=0.123 Sum_probs=81.2
Q ss_pred CCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEec-------CCcEEEEEEeeCCCCEEEEEeCCCc----EE
Q 004410 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSH-------NNYVTSVAFNPVDDNYFISGSIDGK----VR 454 (755)
Q Consensus 388 ~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h-------~~~V~~i~fsp~d~~~l~sgs~Dg~----V~ 454 (755)
.+.|.+|+++|.+ .++++...+.|...+=....-.....+ ...|.+|+++|.+.+.++.+..+.. -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 3589999999965 777788778777665333222222221 2469999999855555555543311 23
Q ss_pred EE-EcCCCeEEEeccC----------CcceEEEEEccC-CCeEEEEeCCCcEEEEEC-CCCeEeeeeeEEecccccCCCC
Q 004410 455 IW-EVRRCQVVDYTDI----------REIVSAVCYCPD-GKGGIVGTMTGNCRFYDI-KDNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 455 iw-dl~~~~~~~~~~~----------~~~V~~v~~spd-g~~la~gs~dg~I~iwD~-~~~~~~~~~~~~~~~~~~~~~~ 521 (755)
|| ....++.-..... ...+..++++|. ...++++...+. ||-. ..++.-..... +. .......
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~-~~-~~~~~~~ 169 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTS-IP-DAFTNGI 169 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETT-SC-CCCSTTT
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCcc-Cc-cccCCCC
Confidence 33 3333332211110 113567888874 456666664443 3332 22332211100 00 0001124
Q ss_pred CeEEEEEcCCCCCEEEEEECC-CcE
Q 004410 522 RITGFQFSPSDPSKVIVTSAD-SLV 545 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s~D-g~I 545 (755)
.+..+.++|.++..++++..+ +.|
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~~~~v 194 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATAPQGM 194 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESSTTCE
T ss_pred CeEEEEECCCCCCEEEEEEcCCCeE
Confidence 688899999777777777765 443
No 372
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=56.06 E-value=1.7e+02 Score=29.40 Aligned_cols=152 Identities=14% Similarity=0.204 Sum_probs=87.6
Q ss_pred CeEEEEeCCCcEEEEeCC---CC------eE---EEEEecCCcEEEEEEeeC--CCCEEEEEeCCCcEEEEEcCCCe---
Q 004410 400 GFLLSSSADKTVRLWQVG---ID------RC---LRVFSHNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQ--- 462 (755)
Q Consensus 400 ~~L~s~s~Dg~V~iWdl~---s~------~~---~~~~~h~~~V~~i~fsp~--d~~~l~sgs~Dg~V~iwdl~~~~--- 462 (755)
..++..+..|.++-.... .. .. ...+.....|..+...+. +..+|+..+..|.++...+..-.
T Consensus 59 ~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r 138 (312)
T 1suu_A 59 DYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK 138 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC--
T ss_pred CEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC
Confidence 367777777876666542 11 11 011234455666544321 35678888999999988874321
Q ss_pred ----EE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 463 ----VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 463 ----~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
.. .+.. .+.+..+....+...++..+.+|.+..+....-........-.....-..+..|..+.... ++..++
T Consensus 139 ~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~-~~~~l~ 216 (312)
T 1suu_A 139 SRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVK-ENPYLL 216 (312)
T ss_dssp --CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECT-TCSEEE
T ss_pred CCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEEC-CCCeEE
Confidence 11 2222 4455555555556788899999999999876422111000000111111345666766655 456788
Q ss_pred EEECCCcEEEEECCcc
Q 004410 538 VTSADSLVRVLCGENV 553 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~~ 553 (755)
+.+..|..........
T Consensus 217 ~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 217 IVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEETTSEEEEEEGGGS
T ss_pred EEECCCceEEEEHHHh
Confidence 8899999998887653
No 373
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=55.19 E-value=1.3e+02 Score=34.42 Aligned_cols=114 Identities=10% Similarity=0.132 Sum_probs=63.0
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccC-------CcceEEEEEcc-CCCeEEEEeCCC-------c
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-------REIVSAVCYCP-DGKGGIVGTMTG-------N 493 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~-------~~~V~~v~~sp-dg~~la~gs~dg-------~ 493 (755)
..|..|+++|.+.+.++.+...+.|...+-....-..+... ...|.+|+++| +...++++.... .
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 38999999996667777787677776665433332332221 24589999999 445666554321 2
Q ss_pred EEEEECC-CCeEeeeeeEEecccccCC-CCCeEEEEEcCCCCCEEEEEECC
Q 004410 494 CRFYDIK-DNQLYQQNQICLQGKKKLP-GKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 494 I~iwD~~-~~~~~~~~~~~~~~~~~~~-~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
..||... .++.-.............. ...+..++++|.++..|+++...
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 4455443 3332222111000000001 12346799999777878777643
No 374
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=53.45 E-value=1.6e+02 Score=29.08 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=95.0
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEE-EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC-eEEEec
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYT 467 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~-~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-~~~~~~ 467 (755)
.|..++......++. . ||.|+.|-....-.+.. ......|..|+... ...++. . ||.|+.|-.... ++-.-.
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 466666554333333 5 89999996543211111 11234566676543 233333 4 899999976542 211111
Q ss_pred cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCC-eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
.....|..|+...+ ..++-+ +|.|+.|-.... ++-. .......|..++... ...++-. ||.|.
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~---------~~~~~~~i~~i~~G~---~~~~~l~-~G~v~ 162 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV---------PAEAQSGVTALDGGV---YTALAVK-NGGVI 162 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC---------CGGGGSSEEEEEECS---SEEEEEE-TTEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC---------CccCCCCeEEEEccc---CEEEEEE-CCEEE
Confidence 12345777766443 444445 999999976542 2210 111224577776643 3333344 79999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
.|-.....+.-.. ......|..++...+. .++. .||.|+.|-.+..
T Consensus 163 ~wG~n~~gqlg~p--~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 163 AWGDNYFGQTTVP--AEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRY 208 (282)
T ss_dssp EEECCTTSTTSCC--GGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTT
T ss_pred EecCCCCCCCCCc--eecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCC
Confidence 9975542111100 1223456666654432 2333 5999999987654
No 375
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=45.58 E-value=2.5e+02 Score=28.31 Aligned_cols=192 Identities=7% Similarity=0.022 Sum_probs=110.1
Q ss_pred eEEEEeCCCcEEEEeCCC----CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc---CC------CeEE-Ee
Q 004410 401 FLLSSSADKTVRLWQVGI----DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV---RR------CQVV-DY 466 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s----~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl---~~------~~~~-~~ 466 (755)
.+++.+.+|.|+--.+.. +.....+...+.+..+.... ..+.++..+..|.++-... +. +..+ ..
T Consensus 7 ~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~ 85 (323)
T 1wp5_A 7 VIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANI 85 (323)
T ss_dssp EEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGT
T ss_pred EEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhc
Confidence 677888888888765431 11111233556666666666 6677777888888666554 22 2211 11
Q ss_pred --ccCCcceEEE-EEcc--CCCeEEEEeCCCcEEEEECCCCeEee-eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 467 --TDIREIVSAV-CYCP--DGKGGIVGTMTGNCRFYDIKDNQLYQ-QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 467 --~~~~~~V~~v-~~sp--dg~~la~gs~dg~I~iwD~~~~~~~~-~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
....+.|.++ .... ++.+++..+.+|.++.-.+..-.... ..-.... .-.....+..+.... +...|+..+
T Consensus 86 i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai--~l~e~d~lv~~~~~~-~~~~i~l~T 162 (323)
T 1wp5_A 86 IPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGI--NLKNDDQVVDVHLTD-GMNELFLVT 162 (323)
T ss_dssp SCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECS--CCCTTCCEEEEEEEC-SCSEEEEEE
T ss_pred cCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEE--EeCCCCEEEEEEEeC-CCCEEEEEe
Confidence 1123445554 3432 26689999999999998875332211 0000000 111224555555554 556788899
Q ss_pred CCCcEEEEECCccee------eEEEeeeccCCceEEEEEecCCC-EEEEEeCCCcEEEEEcCC
Q 004410 541 ADSLVRVLCGENVVG------KFKASAFRVAGSQMFATFTSDGK-HVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~------~~~~~~~~~~~~v~~l~fspdg~-~L~sgs~Dg~I~iWd~~~ 596 (755)
.+|.+..+...+... -.+.........|.++..-+++. .|++.+..|..+.-++..
T Consensus 163 ~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 163 HNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp TTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 999998888655321 11111122334566665544455 888999999988888765
No 376
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=41.57 E-value=3.2e+02 Score=28.26 Aligned_cols=195 Identities=11% Similarity=0.099 Sum_probs=105.7
Q ss_pred eEEEEeCCCcEEEEe---CC------CCeEEEE---EecCCcEEEEEEee--CCCCEEEEEeCCCcEEEEEcCCCe----
Q 004410 401 FLLSSSADKTVRLWQ---VG------IDRCLRV---FSHNNYVTSVAFNP--VDDNYFISGSIDGKVRIWEVRRCQ---- 462 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWd---l~------s~~~~~~---~~h~~~V~~i~fsp--~d~~~l~sgs~Dg~V~iwdl~~~~---- 462 (755)
.|+..+..|.++-+. +. .|..+.. +.....|.++.... ..+.+|+.++..|.++...+....
T Consensus 59 ~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~ 138 (370)
T 3l6v_A 59 TLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLA 138 (370)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCT
T ss_pred EEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccC
Confidence 566666677665543 32 2222211 23456666665432 135689999999999998865321
Q ss_pred --EE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC-------
Q 004410 463 --VV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS------- 531 (755)
Q Consensus 463 --~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~------- 531 (755)
.. .+.. .+.+..+........|+..+.+|.+..|+...-........-.....-..+..|.++...+.
T Consensus 139 ~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~ 217 (370)
T 3l6v_A 139 RGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDE 217 (370)
T ss_dssp TCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC------
T ss_pred CceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccc
Confidence 11 2222 34455555555566888889999988887653221110000001111112345555554431
Q ss_pred ---------------------------CCCEEEEEECCCcEEEEECCcceeeE------E-EeeeccCCceEEEEEecCC
Q 004410 532 ---------------------------DPSKVIVTSADSLVRVLCGENVVGKF------K-ASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 532 ---------------------------d~~~l~s~s~Dg~I~iwd~~~~~~~~------~-~~~~~~~~~v~~l~fspdg 577 (755)
+...+++.+..|..+..........- . .......+.+..+.+..+.
T Consensus 218 ~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~ 297 (370)
T 3l6v_A 218 VEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGST 297 (370)
T ss_dssp -----------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTT
T ss_pred cccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCC
Confidence 34578899999999888765432211 1 1111223455555444455
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 004410 578 KHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 578 ~~L~sgs~Dg~I~iWd~~~ 596 (755)
..|+..+..|.+.-..+..
T Consensus 298 d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 298 DEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp CEEEEEETTCCEEEEEGGG
T ss_pred ceEEEEcCCCeEEEeeHhh
Confidence 6677777778777776654
No 377
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=41.33 E-value=3.1e+02 Score=28.18 Aligned_cols=190 Identities=15% Similarity=0.180 Sum_probs=101.1
Q ss_pred eEEEEeCCCcEEEEeCCCC--------e--EE-EEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC------
Q 004410 401 FLLSSSADKTVRLWQVGID--------R--CL-RVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC------ 461 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~--------~--~~-~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~------ 461 (755)
..+....||.|+.|-.... . .. ..+. ....+..+++.. .....+.-..||.|+.|-....
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 5566677888888853211 1 11 1111 234456667765 6677777788999999965321
Q ss_pred ------eEEEeccCC-cceEEEEEccCCCeEEEEeCCCcEEEEECCC-CeEe---eeeeEEecccccCCCCCeEEEEEcC
Q 004410 462 ------QVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD-NQLY---QQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 462 ------~~~~~~~~~-~~V~~v~~spdg~~la~gs~dg~I~iwD~~~-~~~~---~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
......... ..|..|+. -....++-+.+|.|+.|-... +++- .................|..++...
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~ 220 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS 220 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC
T ss_pred CCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC
Confidence 111122211 24555554 345666677899999996532 1100 0000000111122345677777653
Q ss_pred CCCCEEEEEECCCcEEEEECCccee---------eEEEeeec-cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 531 SDPSKVIVTSADSLVRVLCGENVVG---------KFKASAFR-VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 531 ~d~~~l~s~s~Dg~I~iwd~~~~~~---------~~~~~~~~-~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
.....++-..|+.|..|-....-+ ........ ....|..++.. ..+.+.-..||.|+.|-...
T Consensus 221 -g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 221 -GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp -SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCG
T ss_pred -CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCC
Confidence 346777778899999996443110 11111011 11235555543 34555667899999998654
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.24 E-value=2.1e+02 Score=34.64 Aligned_cols=37 Identities=11% Similarity=0.346 Sum_probs=30.6
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS 426 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~ 426 (755)
.+.+++..++. ++++.+.|+++|||++.+++|+.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44555666665 89999999999999999999998864
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=34.13 E-value=41 Score=38.34 Aligned_cols=38 Identities=16% Similarity=0.422 Sum_probs=31.5
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
..|.++.+ +..+|+|-+.|+++|+|++.+++++.....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35666655 478999999999999999999998877765
No 380
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=31.62 E-value=30 Score=42.26 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=34.0
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecC
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
.|.+++..++..+|+|-+.|+++|||++.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4566677788899999999999999999999998876643
No 381
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=30.70 E-value=6.5e+02 Score=28.66 Aligned_cols=153 Identities=12% Similarity=0.041 Sum_probs=77.4
Q ss_pred CCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE-e------------cCCcEEEEEEeeCCCCEEEEEeCC-
Q 004410 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-S------------HNNYVTSVAFNPVDDNYFISGSID- 450 (755)
Q Consensus 387 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~-~------------h~~~V~~i~fsp~d~~~l~sgs~D- 450 (755)
-.+.|..|+++|.+ .++.+...+.|...+= .++.-..+ . ....|.+|+++|.+.+.++.+...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~D-gG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNA-AKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECC-CCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999976 6666776676665542 23222222 1 123589999998555555554321
Q ss_pred ----CcEEEEEc-CCC---eEEEeccC-----Cc--ceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 451 ----GKVRIWEV-RRC---QVVDYTDI-----RE--IVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 451 ----g~V~iwdl-~~~---~~~~~~~~-----~~--~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
....||-- ..+ +.+..... .. ....++++|. ...++++...+.|. .....++.-.... .+..
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~-~~~~ 175 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMN-QLPD 175 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECT-TSCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccc-cCcc
Confidence 12333332 323 22221100 11 1246888884 35555565544332 2223333221110 0000
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.......+..+.+.|.++..++++..++
T Consensus 176 -~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 -SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp -CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred -cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 0011245788999997777677777665
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=27.31 E-value=84 Score=35.78 Aligned_cols=37 Identities=5% Similarity=0.234 Sum_probs=29.8
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEec
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH 427 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h 427 (755)
.|.++.+ ++.++++-+.|+++|+|++.+++++....-
T Consensus 223 ~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555544 355999999999999999999999888754
No 383
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.58 E-value=4.4e+02 Score=25.41 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=84.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCe--EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc-cC
Q 004410 442 NYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK-KL 518 (755)
Q Consensus 442 ~~l~sgs~Dg~V~iwdl~~~~--~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~-~~ 518 (755)
..+++.+.+|.|+--...... .+.+. ..+.+..+........|+..+..|.++-+....-......-.++.... -.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lk-e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYK-AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCC-TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 345566777777655443311 11122 223444444444556777788899877665432100000000111111 12
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceee----EEEeeeccCCceEEEEEe-cCCCEEEEEeCCCcEEEEE
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGK----FKASAFRVAGSQMFATFT-SDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~----~~~~~~~~~~~v~~l~fs-pdg~~L~sgs~Dg~I~iWd 593 (755)
.+..|.++.... +..+|+..+..|.++.....+.... ...........+..+... .++..|+..+.+|.+..++
T Consensus 82 ~~e~Iv~~~~~~-~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMES-DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCC-TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeC-CCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 345677774433 5667889999999999887653211 111112223455555555 3567899999999999999
Q ss_pred cCCC
Q 004410 594 YSNQ 597 (755)
Q Consensus 594 ~~~~ 597 (755)
++.=
T Consensus 161 ~~ei 164 (256)
T 1zvt_A 161 VSDL 164 (256)
T ss_dssp GGGS
T ss_pred HHHC
Confidence 8653
No 384
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=23.70 E-value=2.1e+02 Score=31.56 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred CcEEEEEEeeCCCCEEEEEeC------------CCcEEEEEcCCCeEEEeccCC--cceEEEEEccCCCeEEEE
Q 004410 429 NYVTSVAFNPVDDNYFISGSI------------DGKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGKGGIVG 488 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~------------Dg~V~iwdl~~~~~~~~~~~~--~~V~~v~~spdg~~la~g 488 (755)
.....|.|.+ ++.+.+.... ...|..++..++++..+.... ..++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
No 385
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=21.80 E-value=1.9e+02 Score=32.19 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=40.8
Q ss_pred cEEEEEEeeCCCCEEEEEeCC------------CcEEEEEcCCCeEEEec--cCCcceEEEEEccCCCeEEEE
Q 004410 430 YVTSVAFNPVDDNYFISGSID------------GKVRIWEVRRCQVVDYT--DIREIVSAVCYCPDGKGGIVG 488 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~D------------g~V~iwdl~~~~~~~~~--~~~~~V~~v~~spdg~~la~g 488 (755)
..-.|+|+| .+++++.-..+ ..+.+.+..++++..+. .....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 356789999 88877664322 24566677777766432 345689999999999988775
Done!