Query 004412
Match_columns 755
No_of_seqs 35 out of 37
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 23:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 96.5 5 0.00011 52.4 40.9 111 99-214 936-1046(1930)
2 TIGR02169 SMC_prok_A chromosom 96.4 3 6.6E-05 49.3 38.1 17 81-97 177-193 (1164)
3 PF13851 GAS: Growth-arrest sp 96.2 1.6 3.5E-05 44.1 21.5 164 128-302 13-191 (201)
4 PRK11637 AmiB activator; Provi 95.9 3.3 7.3E-05 45.3 28.0 16 247-262 212-227 (428)
5 KOG0933 Structural maintenance 95.9 5.6 0.00012 49.1 27.8 224 80-315 676-918 (1174)
6 PRK02224 chromosome segregatio 95.8 5.5 0.00012 46.8 41.5 29 414-442 525-553 (880)
7 TIGR02168 SMC_prok_B chromosom 95.4 8 0.00017 45.6 37.5 8 620-627 679-686 (1179)
8 TIGR00606 rad50 rad50. This fa 95.3 12 0.00025 47.0 37.0 66 222-287 315-380 (1311)
9 KOG0996 Structural maintenance 95.2 13 0.00028 46.8 34.2 157 114-277 385-544 (1293)
10 PF09726 Macoilin: Transmembra 93.9 13 0.00027 44.4 23.1 132 146-303 489-629 (697)
11 TIGR03321 alt_F1F0_F0_B altern 93.1 12 0.00026 38.5 19.2 118 166-296 50-170 (246)
12 PRK14474 F0F1 ATP synthase sub 93.0 11 0.00023 39.4 18.6 118 166-296 50-170 (250)
13 KOG0980 Actin-binding protein 92.9 30 0.00065 42.6 25.0 167 125-301 345-513 (980)
14 PRK12704 phosphodiesterase; Pr 92.7 23 0.0005 40.8 24.2 18 267-284 185-202 (520)
15 PF09726 Macoilin: Transmembra 92.5 12 0.00027 44.5 20.4 170 124-307 422-605 (697)
16 PF00261 Tropomyosin: Tropomyo 92.5 14 0.00031 37.8 22.5 51 142-192 89-139 (237)
17 COG1340 Uncharacterized archae 92.4 19 0.00042 39.2 26.3 188 82-282 49-249 (294)
18 PRK02224 chromosome segregatio 92.3 29 0.00064 41.0 42.2 38 426-464 572-609 (880)
19 TIGR00606 rad50 rad50. This fa 90.8 55 0.0012 41.3 37.5 68 421-488 739-812 (1311)
20 TIGR03319 YmdA_YtgF conserved 90.3 40 0.00086 38.9 22.0 16 269-284 181-196 (514)
21 PF12072 DUF3552: Domain of un 89.6 25 0.00054 35.4 23.3 115 116-235 60-174 (201)
22 PRK06231 F0F1 ATP synthase sub 89.5 26 0.00056 35.6 17.2 102 169-283 96-199 (205)
23 COG1196 Smc Chromosome segrega 88.6 75 0.0016 39.7 37.0 60 424-483 437-496 (1163)
24 PRK13461 F0F1 ATP synthase sub 88.3 24 0.00053 33.8 17.5 106 166-284 50-157 (159)
25 CHL00019 atpF ATP synthase CF0 88.2 28 0.00061 34.3 17.2 105 167-284 70-176 (184)
26 PF12128 DUF3584: Protein of u 88.0 84 0.0018 39.6 34.0 81 115-199 595-675 (1201)
27 PRK00106 hypothetical protein; 87.6 64 0.0014 37.7 21.9 15 618-636 455-469 (535)
28 COG1196 Smc Chromosome segrega 87.3 89 0.0019 39.1 41.7 73 412-484 695-774 (1163)
29 KOG0971 Microtubule-associated 87.2 53 0.0012 41.0 19.7 152 121-279 369-551 (1243)
30 PF12128 DUF3584: Protein of u 87.1 94 0.002 39.1 45.0 57 402-459 612-668 (1201)
31 KOG0250 DNA repair protein RAD 86.6 1E+02 0.0022 39.0 26.1 46 402-447 679-724 (1074)
32 CHL00118 atpG ATP synthase CF0 86.5 32 0.00069 33.2 15.3 71 167-237 68-140 (156)
33 PRK11637 AmiB activator; Provi 86.2 59 0.0013 35.9 28.0 15 263-277 221-235 (428)
34 KOG4674 Uncharacterized conser 85.9 1.1E+02 0.0023 40.8 22.4 201 105-312 283-512 (1822)
35 PRK14472 F0F1 ATP synthase sub 85.7 37 0.00081 33.2 17.2 99 172-283 69-169 (175)
36 PF00038 Filament: Intermediat 85.6 49 0.0011 34.4 25.0 78 78-155 72-152 (312)
37 PRK13460 F0F1 ATP synthase sub 85.2 39 0.00085 33.0 17.3 101 170-283 65-167 (173)
38 PRK13453 F0F1 ATP synthase sub 85.0 41 0.00089 33.0 17.3 105 167-284 64-170 (173)
39 TIGR02168 SMC_prok_B chromosom 84.6 96 0.0021 36.9 38.9 13 620-632 672-684 (1179)
40 PRK05759 F0F1 ATP synthase sub 83.7 40 0.00086 31.9 17.2 104 166-282 49-154 (156)
41 KOG0977 Nuclear envelope prote 83.7 1E+02 0.0022 36.5 29.4 97 387-487 265-361 (546)
42 PF10174 Cast: RIM-binding pro 83.1 1.2E+02 0.0027 37.0 28.8 171 142-316 389-575 (775)
43 PF00038 Filament: Intermediat 82.8 64 0.0014 33.6 27.8 62 428-489 218-283 (312)
44 TIGR01843 type_I_hlyD type I s 82.6 70 0.0015 33.8 21.2 20 77-96 77-96 (423)
45 COG1579 Zn-ribbon protein, pos 82.5 73 0.0016 33.9 18.2 128 125-267 8-137 (239)
46 PHA02562 46 endonuclease subun 82.1 91 0.002 34.8 29.2 12 42-53 149-160 (562)
47 PF15070 GOLGA2L5: Putative go 81.8 1.2E+02 0.0026 36.1 26.7 235 76-316 45-306 (617)
48 PRK09174 F0F1 ATP synthase sub 81.6 66 0.0014 32.9 15.3 35 170-204 102-136 (204)
49 PF07888 CALCOCO1: Calcium bin 81.4 1.2E+02 0.0026 35.8 30.0 74 226-299 297-381 (546)
50 KOG0996 Structural maintenance 81.2 1.7E+02 0.0038 37.5 26.4 152 118-282 403-570 (1293)
51 PRK14471 F0F1 ATP synthase sub 80.6 56 0.0012 31.5 17.2 104 168-286 55-163 (164)
52 PF06818 Fez1: Fez1; InterPro 79.9 52 0.0011 34.4 13.8 54 143-196 8-61 (202)
53 PRK13455 F0F1 ATP synthase sub 79.8 66 0.0014 31.7 16.8 66 170-235 76-143 (184)
54 PRK00409 recombination and DNA 79.2 49 0.0011 40.0 15.4 59 146-204 521-579 (782)
55 TIGR01069 mutS2 MutS2 family p 79.0 41 0.00089 40.5 14.7 65 143-207 513-577 (771)
56 PRK14473 F0F1 ATP synthase sub 78.6 65 0.0014 31.0 17.3 71 166-236 53-125 (164)
57 PRK07353 F0F1 ATP synthase sub 77.7 61 0.0013 30.2 15.2 71 166-236 50-122 (140)
58 KOG4809 Rab6 GTPase-interactin 77.6 1.6E+02 0.0036 35.1 20.1 99 87-192 312-413 (654)
59 PRK07352 F0F1 ATP synthase sub 77.6 74 0.0016 31.1 17.3 67 169-235 67-135 (174)
60 PF10146 zf-C4H2: Zinc finger- 76.9 96 0.0021 32.7 14.9 66 225-293 52-117 (230)
61 KOG0982 Centrosomal protein Nu 76.3 1.6E+02 0.0035 34.3 20.9 158 95-261 172-364 (502)
62 KOG0971 Microtubule-associated 76.0 2.3E+02 0.0049 35.9 26.3 204 78-297 228-469 (1243)
63 TIGR02680 conserved hypothetic 75.8 2.5E+02 0.0054 36.2 28.4 53 225-280 895-947 (1353)
64 PRK14475 F0F1 ATP synthase sub 73.3 95 0.0021 30.3 17.1 70 166-235 55-126 (167)
65 TIGR01144 ATP_synt_b ATP synth 72.7 85 0.0018 29.5 17.2 70 167-236 41-112 (147)
66 COG0711 AtpF F0F1-type ATP syn 72.6 1E+02 0.0022 30.3 17.7 71 172-242 57-129 (161)
67 TIGR02680 conserved hypothetic 71.9 3E+02 0.0066 35.5 31.2 37 77-113 233-269 (1353)
68 PRK13454 F0F1 ATP synthase sub 69.9 1.2E+02 0.0027 30.2 14.9 38 170-207 80-117 (181)
69 KOG4673 Transcription factor T 69.3 2.9E+02 0.0062 34.2 21.9 175 77-268 405-598 (961)
70 PF00769 ERM: Ezrin/radixin/mo 68.0 1.6E+02 0.0035 30.9 15.8 61 146-207 6-66 (246)
71 PRK08475 F0F1 ATP synthase sub 67.3 1.3E+02 0.0029 29.6 13.2 58 171-237 72-129 (167)
72 KOG0161 Myosin class II heavy 67.1 4.6E+02 0.0099 35.7 44.0 70 414-483 1099-1168(1930)
73 PRK09173 F0F1 ATP synthase sub 66.6 1.3E+02 0.0027 29.0 16.9 38 167-204 48-85 (159)
74 COG1579 Zn-ribbon protein, pos 64.7 2E+02 0.0044 30.7 19.0 77 124-202 21-100 (239)
75 KOG1937 Uncharacterized conser 63.9 3E+02 0.0065 32.4 19.8 149 142-313 266-424 (521)
76 PF10146 zf-C4H2: Zinc finger- 63.4 1.9E+02 0.0042 30.5 13.7 99 146-269 2-103 (230)
77 KOG0933 Structural maintenance 63.0 4.3E+02 0.0093 33.9 23.1 232 77-322 687-943 (1174)
78 PF04912 Dynamitin: Dynamitin 62.6 1.7E+02 0.0038 32.2 13.8 66 614-681 205-272 (388)
79 KOG0243 Kinesin-like protein [ 62.1 4.4E+02 0.0095 33.7 19.8 55 85-140 405-461 (1041)
80 PRK09039 hypothetical protein; 62.0 2.5E+02 0.0054 30.9 19.1 12 127-138 46-57 (343)
81 PRK12704 phosphodiesterase; Pr 59.1 3.5E+02 0.0075 31.6 19.0 42 258-299 121-164 (520)
82 PRK13428 F0F1 ATP synthase sub 59.0 3.2E+02 0.0069 31.1 17.0 60 176-235 56-117 (445)
83 PF00430 ATP-synt_B: ATP synth 58.9 95 0.0021 28.1 9.4 65 169-242 47-111 (132)
84 PF12329 TMF_DNA_bd: TATA elem 58.7 41 0.00089 29.5 6.8 36 127-162 12-50 (74)
85 PF08317 Spc7: Spc7 kinetochor 58.7 2.7E+02 0.0058 30.1 18.4 70 229-301 219-288 (325)
86 PF12718 Tropomyosin_1: Tropom 58.2 1.9E+02 0.0041 28.2 17.8 111 146-264 15-125 (143)
87 PF05701 WEMBL: Weak chloropla 57.8 3.5E+02 0.0077 31.3 34.4 65 209-273 124-191 (522)
88 KOG0963 Transcription factor/C 56.4 4.4E+02 0.0096 32.0 18.2 42 120-162 121-162 (629)
89 PRK01156 chromosome segregatio 55.4 4.5E+02 0.0098 31.8 24.8 7 409-415 867-873 (895)
90 PF06005 DUF904: Protein of un 54.5 1.2E+02 0.0026 26.8 8.9 62 222-283 7-68 (72)
91 PF15619 Lebercilin: Ciliary p 54.4 2.6E+02 0.0056 28.7 17.0 140 127-288 12-152 (194)
92 PF10174 Cast: RIM-binding pro 54.1 5.1E+02 0.011 32.0 36.0 78 77-162 77-163 (775)
93 PRK08476 F0F1 ATP synthase sub 53.4 2.1E+02 0.0046 27.4 14.9 61 173-242 59-119 (141)
94 KOG0018 Structural maintenance 53.2 6.2E+02 0.013 32.7 24.2 227 84-323 213-472 (1141)
95 PF00769 ERM: Ezrin/radixin/mo 53.0 3E+02 0.0065 29.0 14.3 21 169-189 1-21 (246)
96 PRK00409 recombination and DNA 52.8 5E+02 0.011 31.8 16.5 13 107-119 441-453 (782)
97 COG2433 Uncharacterized conser 52.3 1.6E+02 0.0034 35.6 11.9 77 120-196 422-504 (652)
98 PRK08476 F0F1 ATP synthase sub 51.5 2.3E+02 0.005 27.2 15.0 27 216-242 104-130 (141)
99 PF08172 CASP_C: CASP C termin 51.3 16 0.00034 38.6 3.6 38 429-466 89-126 (248)
100 PF05546 She9_MDM33: She9 / Md 50.5 3.3E+02 0.0072 28.8 14.9 32 212-243 92-123 (207)
101 PRK11546 zraP zinc resistance 50.4 1E+02 0.0022 30.7 8.7 62 226-287 61-122 (143)
102 CHL00019 atpF ATP synthase CF0 50.3 2.7E+02 0.0058 27.6 15.0 14 250-263 163-176 (184)
103 TIGR03319 YmdA_YtgF conserved 50.0 4.8E+02 0.01 30.5 19.5 42 258-299 115-158 (514)
104 PRK04863 mukB cell division pr 49.5 7.7E+02 0.017 32.7 34.8 51 258-309 408-458 (1486)
105 PF15070 GOLGA2L5: Putative go 47.9 5.7E+02 0.012 30.8 21.5 122 175-298 117-260 (617)
106 COG4942 Membrane-bound metallo 47.8 5E+02 0.011 30.1 23.8 85 91-187 38-126 (420)
107 TIGR01069 mutS2 MutS2 family p 47.7 6.1E+02 0.013 31.1 16.1 10 108-117 437-446 (771)
108 PF10473 CENP-F_leu_zip: Leuci 46.5 3.1E+02 0.0067 27.2 12.4 44 227-270 39-82 (140)
109 TIGR01000 bacteriocin_acc bact 46.2 4.7E+02 0.01 29.3 18.1 21 78-98 101-121 (457)
110 PTZ00491 major vault protein; 45.4 6.6E+02 0.014 31.6 15.9 93 146-242 700-792 (850)
111 PHA02562 46 endonuclease subun 45.1 4.9E+02 0.011 29.2 27.8 24 256-279 332-355 (562)
112 KOG0249 LAR-interacting protei 43.9 6.3E+02 0.014 31.6 15.1 109 194-302 138-257 (916)
113 PF08232 Striatin: Striatin fa 43.7 50 0.0011 31.8 5.4 30 113-142 18-47 (134)
114 PRK03918 chromosome segregatio 42.4 6.7E+02 0.014 30.0 41.0 15 125-139 198-212 (880)
115 KOG0612 Rho-associated, coiled 42.3 9.4E+02 0.02 31.7 23.9 49 78-137 512-560 (1317)
116 PF15290 Syntaphilin: Golgi-lo 41.5 5.5E+02 0.012 28.7 13.2 111 142-305 65-175 (305)
117 PF04111 APG6: Autophagy prote 41.0 5.1E+02 0.011 28.3 13.3 11 258-268 124-134 (314)
118 PRK04863 mukB cell division pr 40.8 1E+03 0.022 31.7 26.6 19 17-35 257-275 (1486)
119 PRK10884 SH3 domain-containing 40.6 2.9E+02 0.0062 28.7 10.6 17 175-191 120-136 (206)
120 PF10168 Nup88: Nuclear pore c 40.4 5.8E+02 0.013 31.1 14.4 14 289-302 699-712 (717)
121 PF13851 GAS: Growth-arrest sp 40.3 4.3E+02 0.0093 27.1 22.4 168 80-278 26-199 (201)
122 TIGR01005 eps_transp_fam exopo 39.8 7.2E+02 0.016 29.6 19.1 24 260-283 375-398 (754)
123 PRK00846 hypothetical protein; 39.8 1.2E+02 0.0027 27.4 6.8 60 419-488 2-61 (77)
124 KOG1029 Endocytic adaptor prot 38.5 9.3E+02 0.02 30.5 20.9 233 11-273 285-561 (1118)
125 PF12240 Angiomotin_C: Angiomo 38.1 5.2E+02 0.011 27.5 14.2 38 122-162 26-74 (205)
126 PF01213 CAP_N: Adenylate cycl 38.1 65 0.0014 35.3 5.8 62 620-681 5-76 (312)
127 KOG0612 Rho-associated, coiled 37.7 1.1E+03 0.024 31.1 23.0 19 650-668 1025-1043(1317)
128 PRK09174 F0F1 ATP synthase sub 37.4 4.8E+02 0.01 26.9 16.9 9 228-236 151-159 (204)
129 KOG0163 Myosin class VI heavy 36.7 9.9E+02 0.022 30.3 16.4 49 113-161 861-909 (1259)
130 PF05557 MAD: Mitotic checkpoi 36.1 12 0.00026 44.0 0.0 55 435-489 373-427 (722)
131 PF10473 CENP-F_leu_zip: Leuci 35.9 4.5E+02 0.0098 26.1 16.9 68 121-192 18-85 (140)
132 PRK10869 recombination and rep 35.8 7.8E+02 0.017 28.8 20.0 69 119-192 156-227 (553)
133 PF05557 MAD: Mitotic checkpoi 35.7 12 0.00026 43.9 0.0 71 119-189 60-130 (722)
134 PRK06231 F0F1 ATP synthase sub 34.6 5.2E+02 0.011 26.5 17.5 13 23-35 12-24 (205)
135 PF15619 Lebercilin: Ciliary p 34.3 5.4E+02 0.012 26.5 19.5 163 77-277 22-194 (194)
136 PRK10884 SH3 domain-containing 33.9 4.9E+02 0.011 27.1 11.0 68 125-192 91-158 (206)
137 COG1340 Uncharacterized archae 33.9 7E+02 0.015 27.7 24.4 53 81-144 13-65 (294)
138 TIGR02606 antidote_CC2985 puta 33.9 82 0.0018 27.3 4.7 46 653-698 9-56 (69)
139 COG2433 Uncharacterized conser 32.7 3.3E+02 0.0072 33.0 10.6 37 125-161 413-452 (652)
140 PF09731 Mitofilin: Mitochondr 32.2 8.4E+02 0.018 28.1 19.4 74 176-249 314-394 (582)
141 TIGR03185 DNA_S_dndD DNA sulfu 32.1 9.1E+02 0.02 28.5 28.7 65 78-142 206-284 (650)
142 PF05667 DUF812: Protein of un 31.6 9.8E+02 0.021 28.7 20.4 76 195-270 405-484 (594)
143 PRK03963 V-type ATP synthase s 31.4 5.2E+02 0.011 25.5 11.9 25 178-202 19-43 (198)
144 COG4913 Uncharacterized protei 31.2 5.9E+02 0.013 32.0 12.3 82 143-243 614-701 (1104)
145 TIGR03185 DNA_S_dndD DNA sulfu 31.2 9.4E+02 0.02 28.4 27.0 63 79-141 228-290 (650)
146 PRK00106 hypothetical protein; 31.1 9.7E+02 0.021 28.5 23.3 7 351-357 293-299 (535)
147 PF11932 DUF3450: Protein of u 30.9 4.7E+02 0.01 27.1 10.4 73 116-192 45-117 (251)
148 PF07111 HCR: Alpha helical co 30.8 1.1E+03 0.025 29.2 21.9 29 113-141 235-263 (739)
149 smart00721 BAR BAR domain. 30.8 1.9E+02 0.0042 28.3 7.3 97 615-726 1-107 (239)
150 PRK13454 F0F1 ATP synthase sub 30.6 5.6E+02 0.012 25.6 15.5 8 224-231 136-143 (181)
151 PRK04778 septation ring format 30.5 9.3E+02 0.02 28.1 26.2 68 205-272 296-366 (569)
152 PRK06568 F0F1 ATP synthase sub 30.4 5.7E+02 0.012 25.6 15.0 18 218-235 103-120 (154)
153 PTZ00419 valyl-tRNA synthetase 30.2 1.5E+02 0.0033 36.7 7.8 66 118-194 927-992 (995)
154 PF06785 UPF0242: Uncharacteri 29.9 4.9E+02 0.011 29.8 10.7 99 387-489 47-155 (401)
155 PF09304 Cortex-I_coil: Cortex 29.9 5.2E+02 0.011 25.0 12.1 62 174-247 10-72 (107)
156 PF03915 AIP3: Actin interacti 29.8 4.5E+02 0.0098 30.3 10.8 81 230-322 199-283 (424)
157 KOG4010 Coiled-coil protein TP 29.8 84 0.0018 33.0 4.7 35 120-154 44-81 (208)
158 COG4026 Uncharacterized protei 29.6 81 0.0018 34.0 4.7 49 440-488 156-204 (290)
159 PF02050 FliJ: Flagellar FliJ 29.3 3.7E+02 0.0079 23.0 13.0 82 80-161 11-93 (123)
160 smart00787 Spc7 Spc7 kinetocho 29.2 8E+02 0.017 27.0 15.3 138 45-209 134-282 (312)
161 PF04201 TPD52: Tumour protein 29.0 91 0.002 31.7 4.7 37 118-154 27-66 (162)
162 TIGR03017 EpsF chain length de 28.7 8.1E+02 0.018 26.9 18.1 180 103-283 150-364 (444)
163 cd07307 BAR The Bin/Amphiphysi 28.6 1.9E+02 0.0041 26.3 6.4 59 671-729 11-69 (194)
164 PF05622 HOOK: HOOK protein; 27.7 20 0.00044 42.2 0.0 103 124-232 243-359 (713)
165 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.4 5.4E+02 0.012 24.4 17.1 32 176-207 27-58 (132)
166 KOG0979 Structural maintenance 27.1 1.5E+03 0.032 29.4 19.5 64 406-469 637-700 (1072)
167 PF03114 BAR: BAR domain; Int 26.6 4.2E+02 0.0092 25.1 8.6 80 618-709 3-89 (229)
168 PF03908 Sec20: Sec20; InterP 26.5 4.1E+02 0.0088 23.7 7.9 63 226-288 8-70 (92)
169 KOG2072 Translation initiation 26.5 1.4E+03 0.031 29.1 30.3 31 166-197 670-700 (988)
170 PF07957 DUF3294: Protein of u 26.3 2.2E+02 0.0048 30.3 7.1 74 655-731 6-87 (216)
171 PF04508 Pox_A_type_inc: Viral 26.2 57 0.0012 23.9 2.0 20 441-460 2-21 (23)
172 PF06428 Sec2p: GDP/GTP exchan 25.6 1.2E+02 0.0027 28.4 4.7 74 167-243 2-75 (100)
173 KOG4674 Uncharacterized conser 25.4 1.9E+03 0.042 30.1 36.3 307 92-487 151-487 (1822)
174 PF09304 Cortex-I_coil: Cortex 25.1 6.4E+02 0.014 24.5 14.3 87 77-192 12-98 (107)
175 PRK12705 hypothetical protein; 24.9 1.2E+03 0.026 27.6 22.3 15 616-634 426-440 (508)
176 PRK13455 F0F1 ATP synthase sub 24.9 6.9E+02 0.015 24.7 15.8 7 117-123 54-60 (184)
177 PF03711 OKR_DC_1_C: Orn/Lys/A 24.8 67 0.0014 31.3 2.9 39 654-694 1-41 (136)
178 PF04880 NUDE_C: NUDE protein, 24.8 79 0.0017 32.1 3.5 52 223-278 4-55 (166)
179 PF09763 Sec3_C: Exocyst compl 24.7 1.2E+03 0.027 27.7 18.3 43 384-426 210-260 (701)
180 PRK04778 septation ring format 24.5 1.2E+03 0.025 27.3 19.7 28 291-318 399-426 (569)
181 PRK10361 DNA recombination pro 24.5 1.2E+03 0.026 27.5 23.1 145 116-287 56-220 (475)
182 PRK10328 DNA binding protein, 24.3 3.3E+02 0.0072 26.8 7.5 28 135-162 10-38 (134)
183 PF05667 DUF812: Protein of un 24.1 1.3E+03 0.028 27.7 18.8 74 198-271 491-564 (594)
184 cd07601 BAR_APPL The Bin/Amphi 24.0 2.2E+02 0.0047 29.9 6.6 75 670-744 19-107 (215)
185 PF04094 DUF390: Protein of un 24.0 1.5E+03 0.033 28.4 15.9 31 110-140 492-522 (828)
186 PF05529 Bap31: B-cell recepto 23.9 2.9E+02 0.0064 27.3 7.2 28 257-284 157-184 (192)
187 PF07111 HCR: Alpha helical co 23.7 1.5E+03 0.032 28.3 30.9 97 128-228 74-178 (739)
188 PRK14471 F0F1 ATP synthase sub 23.6 6.8E+02 0.015 24.2 15.7 9 223-231 101-109 (164)
189 KOG4466 Component of histone d 23.6 8.7E+02 0.019 27.1 11.0 70 174-243 36-114 (291)
190 cd07606 BAR_SFC_plant The Bin/ 23.6 1.6E+02 0.0035 30.4 5.5 73 671-743 19-104 (202)
191 PF12325 TMF_TATA_bd: TATA ele 23.2 6.9E+02 0.015 24.2 11.0 38 123-160 26-63 (120)
192 PF06637 PV-1: PV-1 protein (P 23.1 1.2E+03 0.027 27.1 12.8 21 205-225 352-373 (442)
193 PF10458 Val_tRNA-synt_C: Valy 23.1 4.6E+02 0.01 22.2 7.3 62 120-192 4-65 (66)
194 KOG3758 Uncharacterized conser 22.9 1.5E+03 0.032 27.9 14.7 85 206-294 62-149 (655)
195 PF07888 CALCOCO1: Calcium bin 22.9 1.4E+03 0.03 27.6 40.4 46 78-141 140-185 (546)
196 KOG0946 ER-Golgi vesicle-tethe 22.7 1.7E+03 0.036 28.5 18.5 20 75-94 672-691 (970)
197 PRK03963 V-type ATP synthase s 22.6 7.5E+02 0.016 24.4 14.3 26 257-284 88-113 (198)
198 PF05622 HOOK: HOOK protein; 22.6 29 0.00062 41.0 0.0 53 434-486 548-601 (713)
199 COG4026 Uncharacterized protei 22.5 5E+02 0.011 28.4 8.9 50 151-204 145-194 (290)
200 PTZ00121 MAEBL; Provisional 22.4 2.1E+03 0.046 29.6 24.3 201 99-323 1085-1285(2084)
201 PRK02793 phi X174 lysis protei 22.3 3.3E+02 0.0071 24.0 6.4 49 432-487 7-55 (72)
202 PF02841 GBP_C: Guanylate-bind 22.1 9.2E+02 0.02 25.7 10.9 55 81-135 197-251 (297)
203 cd07636 BAR_GRAF The Bin/Amphi 22.0 1.8E+02 0.0039 30.5 5.5 75 661-735 3-99 (207)
204 PF03693 RHH_2: Uncharacterise 21.9 1.2E+02 0.0027 27.0 3.8 61 654-719 13-75 (80)
205 PRK09039 hypothetical protein; 21.8 1.1E+03 0.024 26.0 17.7 40 240-279 123-162 (343)
206 PLN02943 aminoacyl-tRNA ligase 21.6 2.6E+02 0.0056 34.8 7.6 65 119-194 888-952 (958)
207 PF03962 Mnd1: Mnd1 family; I 21.6 6E+02 0.013 25.9 9.0 58 78-140 66-123 (188)
208 smart00338 BRLZ basic region l 21.6 1.6E+02 0.0035 24.5 4.2 34 435-468 28-61 (65)
209 TIGR02231 conserved hypothetic 21.4 9.1E+02 0.02 27.6 11.3 18 123-140 74-91 (525)
210 TIGR01554 major_cap_HK97 phage 21.4 4.5E+02 0.0099 28.5 8.6 19 123-141 2-20 (378)
211 PRK14472 F0F1 ATP synthase sub 21.3 7.9E+02 0.017 24.1 16.2 16 249-264 156-171 (175)
212 smart00338 BRLZ basic region l 21.2 1.3E+02 0.0028 25.1 3.6 39 446-484 25-63 (65)
213 PRK07353 F0F1 ATP synthase sub 21.2 6.8E+02 0.015 23.3 15.7 86 150-242 30-117 (140)
214 PF04859 DUF641: Plant protein 21.2 1.4E+02 0.003 29.3 4.3 47 443-489 76-122 (131)
215 KOG4691 Uncharacterized conser 21.1 1E+03 0.023 25.5 13.9 104 175-313 61-165 (227)
216 PF08614 ATG16: Autophagy prot 20.6 7.5E+02 0.016 24.8 9.4 26 108-141 20-45 (194)
217 smart00150 SPEC Spectrin repea 20.5 4.8E+02 0.01 21.3 7.9 67 655-736 30-99 (101)
218 PRK08404 V-type ATP synthase s 20.1 7.1E+02 0.015 23.1 13.3 78 169-246 6-85 (103)
219 PF01576 Myosin_tail_1: Myosin 20.1 34 0.00075 41.6 0.0 130 177-313 504-640 (859)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.47 E-value=5 Score=52.35 Aligned_cols=111 Identities=22% Similarity=0.291 Sum_probs=68.2
Q ss_pred hhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 004412 99 EDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKEL 178 (755)
Q Consensus 99 EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~kel 178 (755)
+....+.++..=..+..+-|..|...+-++|..|.+++..++ ..++.|.+.-+++|.....-...+..++.+-+.|
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~----e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l 1011 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLD----ENISKLSKEKKELEERIRELQDDLQAEEEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666667777777777777777777777743 4555566655666655554445555666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH
Q 004412 179 EEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAF 214 (755)
Q Consensus 179 eekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~ 214 (755)
....+..|...++|..++.++=.. ..++.|++..+
T Consensus 1012 ~k~~~kle~~l~~le~~le~e~~~-r~e~Ek~~rkl 1046 (1930)
T KOG0161|consen 1012 NKAKAKLEQQLDDLEVTLEREKRI-RMELEKAKRKL 1046 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 777777777777776666544333 34444444444
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.43 E-value=3 Score=49.31 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHhh
Q 004412 81 QKLDAAEREIEELKKLR 97 (755)
Q Consensus 81 ~kL~~AE~ei~eLKkrR 97 (755)
.+|..+...+.+|+...
T Consensus 177 ~~l~~~~~~l~el~~~~ 193 (1164)
T TIGR02169 177 EELEEVEENIERLDLII 193 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 3
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.15 E-value=1.6 Score=44.11 Aligned_cols=164 Identities=23% Similarity=0.331 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 004412 128 QIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEI 207 (755)
Q Consensus 128 qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl 207 (755)
+|..--++|.. .+=.-|..|.+.+.+|..-....++.+-+...+-+.|.+-|..++.-+.+|+ +.+..+.
T Consensus 13 ~iK~YYndIT~---~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~----k~L~~y~--- 82 (201)
T PF13851_consen 13 EIKNYYNDITL---NNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELR----KQLKNYE--- 82 (201)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHH---
Confidence 33344444443 4455677788888888777776667777778888889999999998887774 4444555
Q ss_pred HhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhH----HHHHH-----------HHHHHHHHhhhhhh
Q 004412 208 RKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESV----SFAQK-----------LSLEIVKMRKDLDQ 272 (755)
Q Consensus 208 ~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~----~~~qk-----------Ls~El~klRkd~e~ 272 (755)
|++..+-.+.+....++.+|..-.-+.+.....+..|...+++-- .+++. |---+..|...+|.
T Consensus 83 -kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 83 -KDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEK 161 (201)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667666666666666666666555555555555544444443321 11111 23456788999999
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 004412 273 KDKILSAMLRKSKSDTAEKQMLLKEVKISK 302 (755)
Q Consensus 273 KDkilSaMLrkSklD~~EKemLlrEvk~~k 302 (755)
||+-|+.+|..+++|++.-..+.+.|.-+-
T Consensus 162 keaqL~evl~~~nldp~~~~~v~~~l~~~l 191 (201)
T PF13851_consen 162 KEAQLNEVLAAANLDPAALSQVSKKLEDVL 191 (201)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998777766555443
No 4
>PRK11637 AmiB activator; Provisional
Probab=95.95 E-value=3.3 Score=45.31 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=6.0
Q ss_pred HhhhhhHHHHHHHHHH
Q 004412 247 EQKEESVSFAQKLSLE 262 (755)
Q Consensus 247 e~kee~~~~~qkLs~E 262 (755)
..+.+.......|..+
T Consensus 212 ~~k~e~~~~l~~L~~~ 227 (428)
T PRK11637 212 QARNERKKTLTGLESS 227 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333334333
No 5
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.93 E-value=5.6 Score=49.07 Aligned_cols=224 Identities=21% Similarity=0.286 Sum_probs=122.0
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh---------------ch
Q 004412 80 SQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKK---------------KD 144 (755)
Q Consensus 80 ~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~---------------k~ 144 (755)
.|+|..++.| ++..+.|=+..+.-..++++.... =+.|.+|+...+-++.-+..+ ..
T Consensus 676 l~~l~~~~~~---~~~~q~el~~le~eL~~le~~~~k-----f~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~ 747 (1174)
T KOG0933|consen 676 LQKLKQAQKE---LRAIQKELEALERELKSLEAQSQK-----FRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELL 747 (1174)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 3455555554 556667777888888888887543 257888998888888777652 34
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhh
Q 004412 145 ESISELNEKLKDMELLVRSKDRVLEEDEQKR----KELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSN 220 (755)
Q Consensus 145 ~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~----keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~ 220 (755)
+.+.+++..+++.+.++-..+.++.--+++. ..=+.||..+++-- .++++.+++-+.++.||.-.|--|.--
T Consensus 748 e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~kei----k~~k~~~e~~~~~~ek~~~e~e~l~lE 823 (1174)
T KOG0933|consen 748 EEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEI----KTAKQRAEESSKELEKRENEYERLQLE 823 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777643333332222222 23344555555443 466777788788887777666333333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHH
Q 004412 221 QRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKI 300 (755)
Q Consensus 221 QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~ 300 (755)
..+++.++...-.++...+..++++-....+.-+=+.+.-.+..+...++.+-++.+...=..-+--..+.+-.+.|...
T Consensus 824 ~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~ 903 (1174)
T KOG0933|consen 824 HEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSD 903 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhc
Confidence 34444555555555555555555444444444333344444444444444433332222111111112344455555555
Q ss_pred HHHHHHHhHHHHHHH
Q 004412 301 SKAKRRQAELETERW 315 (755)
Q Consensus 301 ~kAkrK~AE~E~erW 315 (755)
.+-.++--+.|-.+.
T Consensus 904 ~~l~~kkle~e~~~~ 918 (1174)
T KOG0933|consen 904 GELERKKLEHEVTKL 918 (1174)
T ss_pred ccchHHHHHhHHHHh
Confidence 555555555554443
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=95.82 E-value=5.5 Score=46.84 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=15.7
Q ss_pred HHHHHHHhccchhhHHHHHHHhhhhHHHH
Q 004412 414 LEAFAEQMRMKDEKLEGYRWRLLSMEIES 442 (755)
Q Consensus 414 IeAF~eQmRlKDEKLEaFRwrllsmE~E~ 442 (755)
|+...+++--.-++++.++-++-.++.++
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554444
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.36 E-value=8 Score=45.58 Aligned_cols=8 Identities=13% Similarity=0.650 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 004412 620 LKRLKQQL 627 (755)
Q Consensus 620 ikrLkqql 627 (755)
|..|++++
T Consensus 679 ~~~l~~~~ 686 (1179)
T TIGR02168 679 IEELEEKI 686 (1179)
T ss_pred HHHHHHHH
Confidence 33333333
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.28 E-value=12 Score=46.97 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCC
Q 004412 222 RQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSD 287 (755)
Q Consensus 222 rqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD 287 (755)
.+.+.++...-.++...+.++..+............+|..+....-+.+...+.++..+-.+..++
T Consensus 315 ~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1311)
T TIGR00606 315 REKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELD 380 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 334455555555555666666666666666666677788888888888888888877777666643
No 9
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.15 E-value=13 Score=46.75 Aligned_cols=157 Identities=19% Similarity=0.262 Sum_probs=88.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004412 114 QEQSWFSERKQLRQQIGALINELRILDK---KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAE 190 (755)
Q Consensus 114 heqsW~~ErKrLr~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~ 190 (755)
..-+|+.++..+-++=-.....+-.+-. +-++.+.+...+..|++.+.+..+..+++=+.+-.+|++.+...+..++
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445665555555544444444444332 2233455556666667777665555565556666788888888888888
Q ss_pred HHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 004412 191 ELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDL 270 (755)
Q Consensus 191 eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~ 270 (755)
+....++.+.+..++++.++.+.. ..+..++++|..+++-+.+||+-++...+...-=+.+|..-|..++.++
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel-------~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~ 537 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKEL-------MPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESL 537 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887777766 2223444444445555555554444444444444444444444444444
Q ss_pred hhhHHHH
Q 004412 271 DQKDKIL 277 (755)
Q Consensus 271 e~KDkil 277 (755)
+.+--.|
T Consensus 538 ~e~~~~l 544 (1293)
T KOG0996|consen 538 KEKKTEL 544 (1293)
T ss_pred HHHHHHH
Confidence 3333333
No 10
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.88 E-value=13 Score=44.41 Aligned_cols=132 Identities=30% Similarity=0.335 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHhhHHHHHHHHhhHHHH
Q 004412 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAK-QEAQEHSNEIRKHKTAFIELVSNQRQL 224 (755)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~ak-rEaqehS~dl~Khk~a~lEl~s~Qrql 224 (755)
.+..|+++|.|-...-.+-++++-++++.+++.+++-+.+ ++. ..+. -|..++ ++...++|
T Consensus 489 ~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~--~~~---~~~~r~e~~e~-------------~r~r~~~l 550 (697)
T PF09726_consen 489 SLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARA--LAQ---AQATRQECAES-------------CRQRRRQL 550 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc--ccc---chhccchhHHH-------------HHHHHHHH
Confidence 5566666666655555555555555555555544433222 110 0000 011111 23333444
Q ss_pred HHHHHH-------HHHHHHHhHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHH
Q 004412 225 EAELGR-------AHRQVEARKEELDLVLEQ-KEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLK 296 (755)
Q Consensus 225 EaeL~r-------A~~~l~a~~~EL~sv~e~-kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlr 296 (755)
|.|+.+ .-.++...+.|+..+... ++ +..=++-|.+.|..||-...+=+.=||+ .+.=|.||..
T Consensus 551 E~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~sLsa-------EtriKldLfs 622 (697)
T PF09726_consen 551 ESELKKLRRELKQKEEQIRELESELQELRKYEKE-SEKDTEVLMSALSAMQDKNQHLENSLSA-------ETRIKLDLFS 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHH
Confidence 444444 444444445555444443 33 3334567777888887766665555555 6777899986
Q ss_pred HHHHHHH
Q 004412 297 EVKISKA 303 (755)
Q Consensus 297 Evk~~kA 303 (755)
-+--+|.
T Consensus 623 aLg~akr 629 (697)
T PF09726_consen 623 ALGDAKR 629 (697)
T ss_pred HHHHHHH
Confidence 5544433
No 11
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=93.10 E-value=12 Score=38.55 Aligned_cols=118 Identities=25% Similarity=0.278 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 004412 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (755)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (755)
+...+......+.+.+|+.+..-+.++.+.++.+++....++. -+.++--...+++.++|.|-.+|..++..-=
T Consensus 50 ~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei---- 125 (246)
T TIGR03321 50 TKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRT---- 125 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4455556666788888999999999999988888887655553 3333333555566666666666665553322
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc-cCChHHHHHHHH
Q 004412 244 LVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKS-KSDTAEKQMLLK 296 (755)
Q Consensus 244 sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkS-klD~~EKemLlr 296 (755)
..-++.+|.++..+.. +.+.-.++|..++.+- .+..+++.-|+.
T Consensus 126 -----~~la~~~A~kil~~~~----d~~~~~~lid~~i~~l~~l~~~~~~~l~~ 170 (246)
T TIGR03321 126 -----GAEVFAIARKVLTDLA----DTDLEERMVDVFVQRLRTLDPDEKAALAE 170 (246)
T ss_pred -----HHHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 2335566666665433 3344457888888554 566666777653
No 12
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=92.99 E-value=11 Score=39.39 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 004412 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (755)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (755)
...++.+....+.+.+|+.++.-+.++.+.++.+++....++. -+.++--....++.+++.|-.+|..++..--.
T Consensus 50 ~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~--- 126 (250)
T PRK14474 50 QRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTG--- 126 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4445566667788888999999999998988888888666553 23333335556666666666666665544333
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hccCChHHHHHHHH
Q 004412 244 LVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLR-KSKSDTAEKQMLLK 296 (755)
Q Consensus 244 sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLr-kSklD~~EKemLlr 296 (755)
+-+..+|.++..++. +.+.-.++|...+. -..++.++|+-|..
T Consensus 127 ------~la~~~A~kiL~~~~----d~~~~~~lid~~i~~l~~l~~~~r~~l~~ 170 (250)
T PRK14474 127 ------QQMVKIIRAALADLA----NATLEQQIVGIFIARLEHLSEAERQALAN 170 (250)
T ss_pred ------HHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHhcccCHHHHHHHHh
Confidence 335667777766544 33333478888884 45888888888863
No 13
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.88 E-value=30 Score=42.62 Aligned_cols=167 Identities=22% Similarity=0.276 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 004412 125 LRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEE--LRENAKQEAQE 202 (755)
Q Consensus 125 Lr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~e--LrE~akrEaqe 202 (755)
|..++..++.|.+..=.+...++.+++-.+.+...++. ++.++.++=+.++...++.-..+-.- |.+.+.+.+.-
T Consensus 345 ~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~q---e~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~ 421 (980)
T KOG0980|consen 345 LKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQ---ENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALA 421 (980)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444444444444555666677777777777665 67777665555555555443333221 23444433333
Q ss_pred hhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 004412 203 HSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLR 282 (755)
Q Consensus 203 hS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLr 282 (755)
-=....||++..-+|+...-.|=...+-..+|++.+..-++.+.+.+.+-+-+..+++.+....-.-.|.+-++++.|
T Consensus 422 ~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l-- 499 (980)
T KOG0980|consen 422 AENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESL-- 499 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--
Confidence 233445888888888888877778888888888888888888888888888888888887776655666666666655
Q ss_pred hccCChHHHHHHHHHHHHH
Q 004412 283 KSKSDTAEKQMLLKEVKIS 301 (755)
Q Consensus 283 kSklD~~EKemLlrEvk~~ 301 (755)
+.|..-|+.|++..
T Consensus 500 -----~~El~~l~~e~~~l 513 (980)
T KOG0980|consen 500 -----RQELALLLIELEEL 513 (980)
T ss_pred -----HHHHHHHHHHHHHH
Confidence 33444445444443
No 14
>PRK12704 phosphodiesterase; Provisional
Probab=92.68 E-value=23 Score=40.77 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=9.9
Q ss_pred hhhhhhhHHHHHHHHhhc
Q 004412 267 RKDLDQKDKILSAMLRKS 284 (755)
Q Consensus 267 Rkd~e~KDkilSaMLrkS 284 (755)
.-+-.-|+-|..||=|=+
T Consensus 185 ~a~~~a~~i~~~a~qr~a 202 (520)
T PRK12704 185 EADKKAKEILAQAIQRCA 202 (520)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 334445555666665554
No 15
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.52 E-value=12 Score=44.46 Aligned_cols=170 Identities=18% Similarity=0.272 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhHHHHHHHHH---HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 004412 124 QLRQQIGALINELRILDKKKDESISELNEKLK---DMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRE---NAK 197 (755)
Q Consensus 124 rLr~qI~al~~E~~~le~~k~~~i~EL~~kLk---E~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE---~ak 197 (755)
+|.+.|..|+.|+...|..- .||+-+|. .-|..+. -.+..-+++..+|+.|+..+...-..=|. ++.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E----~ELRsqis~l~~~Er~lk---~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LE 494 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSE----QELRSQISSLTNNERSLK---SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLE 494 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhH----HHHHHHHhhccccchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888766322 23333322 2222222 33444455666666666665554433332 222
Q ss_pred HHHHHhhHHHHhhHHHHH-HHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHH
Q 004412 198 QEAQEHSNEIRKHKTAFI-ELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKI 276 (755)
Q Consensus 198 rEaqehS~dl~Khk~a~l-El~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDki 276 (755)
+-+.+ -.+.|..-++-| |.+++.++-|+--+++...-.+.+.|-....-+ =.+.|-.|+-+||.|+-.||.-
T Consensus 495 krL~e-E~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~------r~~~lE~E~~~lr~elk~kee~ 567 (697)
T PF09726_consen 495 KRLAE-ERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQ------RRRQLESELKKLRRELKQKEEQ 567 (697)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 111111112223 444444444443333332223333333322222 2357779999999999999998
Q ss_pred HHHHHhhc-------cCChHHHHHHHHHHHHHHHHHHH
Q 004412 277 LSAMLRKS-------KSDTAEKQMLLKEVKISKAKRRQ 307 (755)
Q Consensus 277 lSaMLrkS-------klD~~EKemLlrEvk~~kAkrK~ 307 (755)
+..|=..- +=+..|-|+|+-.|...+.|--+
T Consensus 568 ~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~ 605 (697)
T PF09726_consen 568 IRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQH 605 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 88774432 22344667777777766665444
No 16
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.46 E-value=14 Score=37.80 Aligned_cols=51 Identities=35% Similarity=0.439 Sum_probs=38.1
Q ss_pred hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 142 KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (755)
Q Consensus 142 ~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (755)
.-+..+..|+.+|++....+...+...++..+|...++..|..++.=+..+
T Consensus 89 ~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~ 139 (237)
T PF00261_consen 89 SDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAA 139 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456788888889998888888777777777777777777766666655443
No 17
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.43 E-value=19 Score=39.24 Aligned_cols=188 Identities=23% Similarity=0.323 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh------chhhHHHHHHHHH
Q 004412 82 KLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKK------KDESISELNEKLK 155 (755)
Q Consensus 82 kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~------k~~~i~EL~~kLk 155 (755)
++..--+++.+++..|. .-|++|..+ +.+|+.+...+..|+++++.+... ....+..|++.+.
T Consensus 49 kvrE~~e~~~elr~~rd---eineev~el--------K~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~ 117 (294)
T COG1340 49 KVRELREKAQELREERD---EINEEVQEL--------KEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIE 117 (294)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHH
Confidence 33333334444444443 356677554 677888888888888888877653 5567899999999
Q ss_pred HHHHHHhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH----HHHHhhHHHHHHHH
Q 004412 156 DMELLVRSKDRVLEED---EQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAF----IELVSNQRQLEAEL 228 (755)
Q Consensus 156 E~E~l~~~kdka~Eee---~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~----lEl~s~QrqlEaeL 228 (755)
..++..+-...-.+.+ .++-.+|...|-.+.+.-+. .+.. .|+..-+.++++....| -+|+.-=.+.=.+|
T Consensus 118 ~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~-~~~~-~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m 195 (294)
T COG1340 118 RLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEE-NEKL-KELKAEIDELKKKAREIHEKIQELANEAQEYHEEM 195 (294)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998886555555555 33445666666666554321 1111 22223244444333333 34444444555789
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 004412 229 GRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLR 282 (755)
Q Consensus 229 ~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLr 282 (755)
..+....|-.+.+.+.+-+.-.+....+..+..++.-++.++.+=++.|.++..
T Consensus 196 ~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 196 IKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987654
No 18
>PRK02224 chromosome segregation protein; Provisional
Probab=92.28 E-value=29 Score=41.03 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=20.7
Q ss_pred hhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhch
Q 004412 426 EKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNM 464 (755)
Q Consensus 426 EKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~ 464 (755)
+++..++-++-+++.++.++. .+..+..++..+..+-.
T Consensus 572 ~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~ 609 (880)
T PRK02224 572 EEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIE 609 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 356666666666666666665 35555544444333333
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.85 E-value=55 Score=41.34 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=54.0
Q ss_pred hccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhh------HHHHHHHHHHHHHhh
Q 004412 421 MRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFER------EEELHSLKEQFISQL 488 (755)
Q Consensus 421 mRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~R------e~El~sLk~ql~~~~ 488 (755)
-++++..+..++-++-.++.++..+.+.++.+...+..+.++.-.+++|+-.= ..++..++.++...-
T Consensus 739 ~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~ 812 (1311)
T TIGR00606 739 IDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQA 812 (1311)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888999999999999999999999999999888888764433 567777887777654
No 20
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.33 E-value=40 Score=38.89 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=8.1
Q ss_pred hhhhhHHHHHHHHhhc
Q 004412 269 DLDQKDKILSAMLRKS 284 (755)
Q Consensus 269 d~e~KDkilSaMLrkS 284 (755)
+-.-|+-|..||=|=+
T Consensus 181 ~~~a~~i~~~aiqr~a 196 (514)
T TIGR03319 181 DKKAKEILATAIQRYA 196 (514)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3334555556665544
No 21
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=89.58 E-value=25 Score=35.43 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 116 QSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELREN 195 (755)
Q Consensus 116 qsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~ 195 (755)
.-|+.-|..+-+++..-.+++..++.+ +..-++.|......+..+...++.....-......|...+.-...+...
T Consensus 60 ee~~~~r~~~E~E~~~~~~el~~~E~r----l~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~ 135 (201)
T PF12072_consen 60 EEAQKLRQELERELKERRKELQRLEKR----LQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEE 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666555555554432 2222222222222222222222222222223333344444444455555
Q ss_pred HHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004412 196 AKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQV 235 (755)
Q Consensus 196 akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l 235 (755)
...+|.+ ++-|..+.+--+=|..-..++..+.+..+++.
T Consensus 136 ~~~~Le~-iAglT~eEAk~~Ll~~le~e~~~e~a~~ir~~ 174 (201)
T PF12072_consen 136 QQQELEE-IAGLTAEEAKEILLEKLEEEARREAAALIRRI 174 (201)
T ss_pred HHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666 44554444433333333444445555444443
No 22
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=89.55 E-value=26 Score=35.63 Aligned_cols=102 Identities=21% Similarity=0.302 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004412 169 EEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVL 246 (755)
Q Consensus 169 Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~ 246 (755)
++.+....+.+.+|..+..-+.++.+.++.++..--.++. -+.++--.+..++.++|.+-..|..++..-=..|
T Consensus 96 ~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~l---- 171 (205)
T PRK06231 96 QQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVEL---- 171 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3444445566666666666666666666666654322221 1222223444555555555555555543322222
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 004412 247 EQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRK 283 (755)
Q Consensus 247 e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrk 283 (755)
+..+|.++..+-. |-++-+++|..++++
T Consensus 172 -----Av~iA~kiL~k~l----d~~~~~~lI~~~i~~ 199 (205)
T PRK06231 172 -----AMLAAEELIKKKV----DREDDDKLVDEFIRE 199 (205)
T ss_pred -----HHHHHHHHHHhhC----CHHHHHHHHHHHHHH
Confidence 3444555443321 334446777777754
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=88.60 E-value=75 Score=39.71 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=30.9
Q ss_pred chhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHH
Q 004412 424 KDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQ 483 (755)
Q Consensus 424 KDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~q 483 (755)
.+..++.++|.+-.++..+..++..+..+++++.+++.....++.-+..-...+.+|+..
T Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 496 (1163)
T COG1196 437 LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496 (1163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555444444444444443
No 24
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=88.32 E-value=24 Score=33.75 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 004412 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (755)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (755)
...++......+.+.+|..+..-+.++++.++.+++....++. -+.++--.+..++.+++.+-.+|..++..-=.
T Consensus 50 ~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~--- 126 (159)
T PRK13461 50 EDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAV--- 126 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4444556666778888888888888888888888877554443 22222223444444444444444444432222
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 004412 244 LVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKS 284 (755)
Q Consensus 244 sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkS 284 (755)
+-+..+|.++...-. +-++-+++|...+.+.
T Consensus 127 ------~lA~~~a~kil~~~~----~~~~~~~li~~~i~~~ 157 (159)
T PRK13461 127 ------DLAVLLSSKALEESI----DESEHRRLIKDFISKV 157 (159)
T ss_pred ------HHHHHHHHHHHHhHc----CHHHHHHHHHHHHhHc
Confidence 223444444433222 3344456666666554
No 25
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=88.20 E-value=28 Score=34.32 Aligned_cols=105 Identities=16% Similarity=0.073 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 004412 167 VLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDL 244 (755)
Q Consensus 167 a~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~s 244 (755)
..++......+.+.+|..+...+.++.+.++.+++.....+. -+.++--.+..++.+++.+-.+|..++..-=.
T Consensus 70 ~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~---- 145 (184)
T CHL00019 70 RREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVF---- 145 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 334555666677778888888888888888777766444332 22222224444445555555555444432222
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 004412 245 VLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKS 284 (755)
Q Consensus 245 v~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkS 284 (755)
+-++.+|.++..+.. +.++-+++|...+.+.
T Consensus 146 -----~lav~~A~kil~~~l----d~~~~~~lid~~i~~l 176 (184)
T CHL00019 146 -----QLALQRALGTLNSCL----NNELHLRTINANIGLL 176 (184)
T ss_pred -----HHHHHHHHHHHHhHc----CHHHHHHHHHHHHHHH
Confidence 223444444433322 3334456666666543
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.03 E-value=84 Score=39.56 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 115 EQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRE 194 (755)
Q Consensus 115 eqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE 194 (755)
.+.|......|++++..+...+..+.+. .+++++.|+....-+.....++....+..+....++..+......++.
T Consensus 595 ~pd~~~~ee~L~~~l~~~~~~l~~~~~~----~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 670 (1201)
T PF12128_consen 595 VPDYAASEEELRERLEQAEDQLQSAEER----QEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQ 670 (1201)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3458888889999998888887775533 455555555544444333344444444445555555544444444444
Q ss_pred HHHHH
Q 004412 195 NAKQE 199 (755)
Q Consensus 195 ~akrE 199 (755)
..+++
T Consensus 671 ~~~~~ 675 (1201)
T PF12128_consen 671 EIEEA 675 (1201)
T ss_pred HHHHH
Confidence 33333
No 27
>PRK00106 hypothetical protein; Provisional
Probab=87.55 E-value=64 Score=37.73 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 004412 618 YKLKRLKQQLLMLERFTGK 636 (755)
Q Consensus 618 yKikrLkqqll~lErl~g~ 636 (755)
.=||||++ ||+++..
T Consensus 455 ~~i~rl~~----lE~ia~~ 469 (535)
T PRK00106 455 NYIKRLRD----LEEIANS 469 (535)
T ss_pred HHHHHHHH----HHHHHhc
Confidence 34788774 7888544
No 28
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=87.34 E-value=89 Score=39.11 Aligned_cols=73 Identities=33% Similarity=0.408 Sum_probs=38.5
Q ss_pred hhHHHHHHHhccchhhHHHHHHH-------hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHH
Q 004412 412 LELEAFAEQMRMKDEKLEGYRWR-------LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQF 484 (755)
Q Consensus 412 ~EIeAF~eQmRlKDEKLEaFRwr-------llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql 484 (755)
.++..+..++.-..-.++..+++ +-..+.+.+++++++..+...+..+..+...+..=+..-+.++.++.++.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (1163)
T COG1196 695 NELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454444444444444444 33444555566666666666655555555445555555555565555554
No 29
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.24 E-value=53 Score=40.95 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 004412 121 ERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENA---- 196 (755)
Q Consensus 121 ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~a---- 196 (755)
+=|+|-+|=.-|++-++.||.-.-.+--+-++.-+|+|..- .++++-++-..-|..++..+|.+..+|+|.-
T Consensus 369 qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~----sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl 444 (1243)
T KOG0971|consen 369 QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKN----SELEELRRQKERLSRELDQAESTIADLKEQVDAAL 444 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45777777778888888777522222122222222222221 2233333333445555555555555555511
Q ss_pred H-------------------HHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHH
Q 004412 197 K-------------------QEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQ 257 (755)
Q Consensus 197 k-------------------rEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~q 257 (755)
+ +.+-+-+.||..-++.==.|..+++|+|-+|. +++|-++.....+.-+++.....+-
T Consensus 445 GAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLr---eEld~~~g~~kel~~r~~aaqet~y 521 (1243)
T KOG0971|consen 445 GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLR---EELDMAKGARKELQKRVEAAQETVY 521 (1243)
T ss_pred cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 1 23334444444333333478888999998886 5666667777777778888888888
Q ss_pred HHHHHHHHHhhhh--------hhhHHHHHH
Q 004412 258 KLSLEIVKMRKDL--------DQKDKILSA 279 (755)
Q Consensus 258 kLs~El~klRkd~--------e~KDkilSa 279 (755)
++.-=|.|+|.-. +.+|...|.
T Consensus 522 DrdqTI~KfRelva~Lqdqlqe~~dq~~Ss 551 (1243)
T KOG0971|consen 522 DRDQTIKKFRELVAHLQDQLQELTDQQESS 551 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 8888888887543 345655554
No 30
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=87.10 E-value=94 Score=39.13 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHh
Q 004412 402 YAAVIEKRHHLELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQL 459 (755)
Q Consensus 402 ya~~Ie~rH~~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~ 459 (755)
....| ..|..+.++.+.++..-..+++..+-.+-....++++.+..++.|+.+..++
T Consensus 612 ~~~~l-~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 668 (1201)
T PF12128_consen 612 AEDQL-QSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQL 668 (1201)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344 3456667888888887788888877777777777766666666665555444
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.59 E-value=1e+02 Score=39.00 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhh
Q 004412 402 YAAVIEKRHHLELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQS 447 (755)
Q Consensus 402 ya~~Ie~rH~~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS 447 (755)
..+....+|...|+-|.+-|+..++..+.--.++.....|+..|+.
T Consensus 679 ~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 679 ELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667788888888888888888888888888888888888877
No 32
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=86.51 E-value=32 Score=33.16 Aligned_cols=71 Identities=25% Similarity=0.242 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004412 167 VLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEA 237 (755)
Q Consensus 167 a~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a 237 (755)
..++......+.+.+|+.+..-+.++.+.++.+++....++. .+.++--.+..++.+++.+-.+|..++.+
T Consensus 68 ~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~ 140 (156)
T CHL00118 68 ILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEE 140 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556677788888888888888888887777665553 23333335555566666666655555543
No 33
>PRK11637 AmiB activator; Provisional
Probab=86.24 E-value=59 Score=35.93 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=5.6
Q ss_pred HHHHhhhhhhhHHHH
Q 004412 263 IVKMRKDLDQKDKIL 277 (755)
Q Consensus 263 l~klRkd~e~KDkil 277 (755)
+..|.++.......|
T Consensus 221 l~~L~~~~~~~~~~l 235 (428)
T PRK11637 221 LTGLESSLQKDQQQL 235 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 34
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=85.93 E-value=1.1e+02 Score=40.79 Aligned_cols=201 Identities=18% Similarity=0.178 Sum_probs=129.6
Q ss_pred hhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 004412 105 EKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISI 184 (755)
Q Consensus 105 eKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~ 184 (755)
.|.+.+|-+.-..|..+..-|.+-|..+.+=+-. -..++.+..+.|++.+.... +..+.-..++..++.-|..
T Consensus 283 ~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled----~~~~~~e~~d~l~e~~~sl~---~~~~~~~k~~~~le~~l~~ 355 (1822)
T KOG4674|consen 283 KKLNELWKSKLEELSHEVAELQRAIEELEKLLED----ASERNKENTDQLKELEQSLS---KLNEKLEKKVSRLEGELED 355 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 3788999999999999998888888766543333 44567777788888887775 5555555667666666655
Q ss_pred HHHHHHHHHH-HHHHHHHHhhHHHHhhHHHHH------------------HHHhh----------HHHHHHHHHHHHHHH
Q 004412 185 AEKIAEELRE-NAKQEAQEHSNEIRKHKTAFI------------------ELVSN----------QRQLEAELGRAHRQV 235 (755)
Q Consensus 185 aEk~~~eLrE-~akrEaqehS~dl~Khk~a~l------------------El~s~----------QrqlEaeL~rA~~~l 235 (755)
+..-...-.+ .+--+....++++.+-.--+. |+... =.+.+-.|.+++..+
T Consensus 356 an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~ 435 (1822)
T KOG4674|consen 356 ANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSEL 435 (1822)
T ss_pred hhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5544433111 111110122333322222221 22111 122336677788888
Q ss_pred HHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhHHHH
Q 004412 236 EARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAELET 312 (755)
Q Consensus 236 ~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE~E~ 312 (755)
+.+...+-+++...+.++-=.+++-.++..+++.+.+.-.-+-.|.---.-=..+..+|+.|+..++...+++.-..
T Consensus 436 e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~ 512 (1822)
T KOG4674|consen 436 ERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSD 512 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc
Confidence 88888888888888888877778888888888887777776666655544445667789999999999998876544
No 35
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=85.70 E-value=37 Score=33.16 Aligned_cols=99 Identities=23% Similarity=0.307 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh--hHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 004412 172 EQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRK--HKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQK 249 (755)
Q Consensus 172 ~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~K--hk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~k 249 (755)
.....+.+.+|..++.-+.++.+.++.++.....++.. +.++--.+..++.+++.+-.+|..++..-=..+
T Consensus 69 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~l------- 141 (175)
T PRK14472 69 EAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADL------- 141 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 33344455556666666666666666555554444321 122222445555556666666655553332222
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 004412 250 EESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRK 283 (755)
Q Consensus 250 ee~~~~~qkLs~El~klRkd~e~KDkilSaMLrk 283 (755)
+..+|.++...-. +.++-+++|..++++
T Consensus 142 --A~~~a~kil~~~l----~~~~~~~li~~~i~~ 169 (175)
T PRK14472 142 --AVKGAEKIIRTSL----DADKQKKVVDSMIQD 169 (175)
T ss_pred --HHHHHHHHHHHHC----CHHHHHHHHHHHHHH
Confidence 3444444433322 334445566666544
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.56 E-value=49 Score=34.41 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=44.2
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHH
Q 004412 78 KLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQE---QSWFSERKQLRQQIGALINELRILDKKKDESISELNEKL 154 (755)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAshe---qsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kL 154 (755)
.|..-+..+..++.++|.+-.+-...+..+-.=+.+-+ ..=...|-.|..+|..|.+|+..+...++..+.+|..++
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 34444555555555554443333333322221111111 112235677888899999999999888888888888877
Q ss_pred H
Q 004412 155 K 155 (755)
Q Consensus 155 k 155 (755)
.
T Consensus 152 ~ 152 (312)
T PF00038_consen 152 Q 152 (312)
T ss_dssp -
T ss_pred c
Confidence 6
No 37
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=85.25 E-value=39 Score=33.02 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004412 170 EDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLE 247 (755)
Q Consensus 170 ee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e 247 (755)
+......+.+.+|..+..-+.++.+.++.++.....++. -++++--.+.+++.+++.+-.+|..++..-=..|
T Consensus 65 eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~l----- 139 (173)
T PRK13460 65 EAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEM----- 139 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 344445566777777777777777777777776555553 3334444566666677777666666664332222
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 004412 248 QKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRK 283 (755)
Q Consensus 248 ~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrk 283 (755)
++.+|.++...-. +.++-+++|...+.+
T Consensus 140 ----A~~~a~kil~~~l----~~~~~~~lid~~i~~ 167 (173)
T PRK13460 140 ----TITIASKVLEKQL----KKEDYKAFIETELAK 167 (173)
T ss_pred ----HHHHHHHHHHHHC----CHHHHHHHHHHHHHH
Confidence 3444444443322 334445666666644
No 38
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=84.95 E-value=41 Score=33.02 Aligned_cols=105 Identities=17% Similarity=0.242 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh--hHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 004412 167 VLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRK--HKTAFIELVSNQRQLEAELGRAHRQVEARKEELDL 244 (755)
Q Consensus 167 a~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~K--hk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~s 244 (755)
..++......+.+.+|..+..-+.++.+.++.++.....++.. +.++--.+..++.+++.+-..|..++..--.++
T Consensus 64 ~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~l-- 141 (173)
T PRK13453 64 AKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSEL-- 141 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3344455556777777888888888888777777665544431 222222344555555555555555553332222
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 004412 245 VLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKS 284 (755)
Q Consensus 245 v~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkS 284 (755)
+..+|.++...-. +.++-+++|..+|.+.
T Consensus 142 -------A~~~a~kll~~~l----~~~~~~~lI~~~i~~~ 170 (173)
T PRK13453 142 -------SVLIASKVLRKEI----SEQDQKALVDKYLKEA 170 (173)
T ss_pred -------HHHHHHHHHHhHc----CHHHHHHHHHHHHHhh
Confidence 3344444432211 3344567777777654
No 39
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=84.56 E-value=96 Score=36.95 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 004412 620 LKRLKQQLLMLER 632 (755)
Q Consensus 620 ikrLkqqll~lEr 632 (755)
|..|.+++-.|++
T Consensus 672 ~~~l~~e~~~l~~ 684 (1179)
T TIGR02168 672 ILERRREIEELEE 684 (1179)
T ss_pred hhhHHHHHHHHHH
Confidence 4444444444443
No 40
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=83.70 E-value=40 Score=31.86 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 004412 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (755)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (755)
...++.+....+.+.+|..+..-+.++++.++.+++....++. .+.++--....++.+++.+-..|..++..--.+
T Consensus 49 ~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~-- 126 (156)
T PRK05759 49 RAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVAD-- 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4445556667788888888888888888888877777554443 223333344444555555555544444333222
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 004412 244 LVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLR 282 (755)
Q Consensus 244 sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLr 282 (755)
-+..+|.++...-. |.+.-.++|...+.
T Consensus 127 -------lA~~~a~k~l~~~~----d~~~~~~~i~~~i~ 154 (156)
T PRK05759 127 -------LAVAGAEKILGREL----DAAAQSDLIDKLIA 154 (156)
T ss_pred -------HHHHHHHHHHHhHc----CHHHHHHHHHHHHh
Confidence 24555555554422 22333455555554
No 41
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.70 E-value=1e+02 Score=36.47 Aligned_cols=97 Identities=20% Similarity=0.354 Sum_probs=71.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhh
Q 004412 387 DGKRLEGWVRLEAEKYAAVIEKRHHLELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKL 466 (755)
Q Consensus 387 ~~~~le~W~~~e~erya~~Ie~rH~~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~l 466 (755)
+-++++.|++..-..--+..+.-+-..=.+=+|.++++. .+..+|-+|-.+|..-.-|-..|+.|+..+ ..+.-.-
T Consensus 265 nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~-~i~~Lr~klselE~~n~~L~~~I~dL~~ql---~e~~r~~ 340 (546)
T KOG0977|consen 265 NRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRS-RISGLRAKLSELESRNSALEKRIEDLEYQL---DEDQRSF 340 (546)
T ss_pred hHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHh-cccchhhhhccccccChhHHHHHHHHHhhh---hhhhhhh
Confidence 556788888875444443333334333344566666664 689999999999999999999999998654 4566778
Q ss_pred HHHHHhhHHHHHHHHHHHHHh
Q 004412 467 EALLFEREEELHSLKEQFISQ 487 (755)
Q Consensus 467 Eall~~Re~El~sLk~ql~~~ 487 (755)
|+.|.+++.+++-+.++...+
T Consensus 341 e~~L~~kd~~i~~mReec~~l 361 (546)
T KOG0977|consen 341 EQALNDKDAEIAKMREECQQL 361 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999988886555
No 42
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=83.06 E-value=1.2e+02 Score=37.03 Aligned_cols=171 Identities=27% Similarity=0.399 Sum_probs=109.4
Q ss_pred hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004412 142 KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRK-------------ELEEKISIAEKIAEELRENAKQEAQEHSNEIR 208 (755)
Q Consensus 142 ~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~k-------------eleekLa~aEk~~~eLrE~akrEaqehS~dl~ 208 (755)
+++..|..|..++.-++..+..+|+.+.....+.. .|++=+..-+++.+.|++.-.+.-++...++.
T Consensus 389 ~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele 468 (775)
T PF10174_consen 389 KKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELE 468 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667778888888888888777777776654443 45555556666666665543344456666777
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccC--
Q 004412 209 KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKS-- 286 (755)
Q Consensus 209 Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSkl-- 286 (755)
+|+.-+-++...-..|+.+|.-.--+|+.++.+.-++...-+...+-+..|--++.+.+-+.+ ++.+.+-+ ++.
T Consensus 469 ~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~---kl~~ql~k-~~~~~ 544 (775)
T PF10174_consen 469 TYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHE---KLEKQLEK-LRANA 544 (775)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHH---HHHHHHHH-HHhCH
Confidence 888888777777778888888888888888888888888888877777666666666555554 23333322 111
Q ss_pred C-hHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004412 287 D-TAEKQMLLKEVKISKAKRRQAELETERWK 316 (755)
Q Consensus 287 D-~~EKemLlrEvk~~kAkrK~AE~E~erWk 316 (755)
+ +..=.+|-++|...+..--.+-.|.||-.
T Consensus 545 e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl 575 (775)
T PF10174_consen 545 ELRDRIQQLEQEVTRYREESEKAQAEVERLL 575 (775)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11223555666666544444445555544
No 43
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.82 E-value=64 Score=33.57 Aligned_cols=62 Identities=27% Similarity=0.390 Sum_probs=44.9
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhc----hhhHHHHHhhHHHHHHHHHHHHHhhh
Q 004412 428 LEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDN----MKLEALLFEREEELHSLKEQFISQLK 489 (755)
Q Consensus 428 LEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~----~~lEall~~Re~El~sLk~ql~~~~~ 489 (755)
+-..|-++=++..++..|++....|...+..+.+.. ..+.+.+..++.|+..++.++..++.
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 455666667777777777777777777776665433 34677788889999999998887764
No 44
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.57 E-value=70 Score=33.85 Aligned_cols=20 Identities=10% Similarity=0.126 Sum_probs=12.6
Q ss_pred hhHHhHHHHHHHHHHHHHHh
Q 004412 77 CKLSQKLDAAEREIEELKKL 96 (755)
Q Consensus 77 ~~L~~kL~~AE~ei~eLKkr 96 (755)
..+..++..++.++..++..
T Consensus 77 ~~~~~~l~~l~~~~~~l~a~ 96 (423)
T TIGR01843 77 TDVEADAAELESQVLRLEAE 96 (423)
T ss_pred chhhhHHHHHHHHHHHHHHH
Confidence 34556777777777766544
No 45
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.45 E-value=73 Score=33.95 Aligned_cols=128 Identities=23% Similarity=0.266 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 004412 125 LRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAK--QEAQE 202 (755)
Q Consensus 125 Lr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~ak--rEaqe 202 (755)
....|..+-.++..++.+....-.+|.++..+++.+- +.++.-+..-..++......+....++|++.+ ++.+-
T Consensus 8 ~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~----~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~ 83 (239)
T COG1579 8 SLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALN----KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS 83 (239)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666655566666666666665554 33444444444444444444444444444332 12221
Q ss_pred hhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 004412 203 HSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMR 267 (755)
Q Consensus 203 hS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klR 267 (755)
-. -.. .-.+.|..++..|-++..+.+.+|.-++....+-..-...|...+..++
T Consensus 84 ~v---~~~--------~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 84 AV---KDE--------RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred cc---ccH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 000 1123455677777777777777776555444433333333333333333
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.09 E-value=91 Score=34.83 Aligned_cols=12 Identities=17% Similarity=0.280 Sum_probs=7.5
Q ss_pred CchhhHHHHHHH
Q 004412 42 DDKWSELHDKML 53 (755)
Q Consensus 42 d~k~~~~lq~ML 53 (755)
+..|.+++..++
T Consensus 149 ~~er~~il~~l~ 160 (562)
T PHA02562 149 APARRKLVEDLL 160 (562)
T ss_pred hHhHHHHHHHHh
Confidence 345677777755
No 47
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=81.83 E-value=1.2e+02 Score=36.09 Aligned_cols=235 Identities=19% Similarity=0.283 Sum_probs=114.5
Q ss_pred hhhHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh----------hchh
Q 004412 76 KCKLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDK----------KKDE 145 (755)
Q Consensus 76 ~~~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~----------~k~~ 145 (755)
+....+++...|..|.+|+.--.+-..-+. ..-...-++.+..|=..|+.+++.|...+...-. .++.
T Consensus 45 k~~~~~~V~eLE~sL~eLk~q~~~~~~~~~--pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEe 122 (617)
T PF15070_consen 45 KEHDISRVQELERSLSELKNQMAEPPPPEP--PAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEE 122 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888766655543332 1233344567777777777777777765554321 1222
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Q 004412 146 SISELNEKLKDMELLVRSKDRVLEEDEQ----------KRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFI 215 (755)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~----------k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~l 215 (755)
++.+|++.+.+.+.-.....+-++.-+. --++|.+.|+.++..-+.|. .-|-|+.. +-....|.. -
T Consensus 123 rL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt-ne~~elt~-~lq~Eq~~~--k 198 (617)
T PF15070_consen 123 RLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT-NENMELTS-ALQSEQHVK--K 198 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH-HhhhHhhH-HHHHHHHHH--H
Confidence 3333333333333222211111111100 01334444444444333331 11222222 111112211 1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCh
Q 004412 216 ELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEES-------VSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDT 288 (755)
Q Consensus 216 El~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~-------~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~ 288 (755)
||..+--+++..|+.-...+..+..|+.++..+.+.. ++-.+.|..|-..|.+.+-+---.+..+=..=.=.+
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~ 278 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGK 278 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4444445666677777777777777777777766652 233456667766666665433332222211111112
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004412 289 AEKQMLLKEVKISKAKRRQAELETERWK 316 (755)
Q Consensus 289 ~EKemLlrEvk~~kAkrK~AE~E~erWk 316 (755)
..-++..+|+..+++.=..+..+-+.-+
T Consensus 279 ~~~E~~~~ELq~~qe~Lea~~qqNqqL~ 306 (617)
T PF15070_consen 279 VQLEMAHQELQEAQEHLEALSQQNQQLQ 306 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 2336677777777666555554444443
No 48
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=81.62 E-value=66 Score=32.93 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004412 170 EDEQKRKELEEKISIAEKIAEELRENAKQEAQEHS 204 (755)
Q Consensus 170 ee~~k~keleekLa~aEk~~~eLrE~akrEaqehS 204 (755)
+.+....+.+.+|+.+..-+.++.+.++.+++...
T Consensus 102 eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~ 136 (204)
T PRK09174 102 EADAAVAAYEQELAQARAKAHSIAQAAREAAKAKA 136 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666777777777777777766666544
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.42 E-value=1.2e+02 Score=35.83 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhh-----------hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHH
Q 004412 226 AELGRAHRQVEARKEELDLVLEQKE-----------ESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQML 294 (755)
Q Consensus 226 aeL~rA~~~l~a~~~EL~sv~e~ke-----------e~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemL 294 (755)
..|..+..+....+.||.++...++ +...++..|+.....||..--+++....++..-+..+.++-+.|
T Consensus 297 e~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L 376 (546)
T PF07888_consen 297 EQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKL 376 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333344444444445544444432 44555666777777777777788888777776666666666666
Q ss_pred HHHHH
Q 004412 295 LKEVK 299 (755)
Q Consensus 295 lrEvk 299 (755)
-+|+-
T Consensus 377 ~~el~ 381 (546)
T PF07888_consen 377 SRELQ 381 (546)
T ss_pred HHHHH
Confidence 66653
No 50
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.24 E-value=1.7e+02 Score=37.53 Aligned_cols=152 Identities=21% Similarity=0.282 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh----------chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 004412 118 WFSERKQLRQQIGALINELRILDKK----------KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEK 187 (755)
Q Consensus 118 W~~ErKrLr~qI~al~~E~~~le~~----------k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk 187 (755)
-....|++.+.|.-|.+++...+.. ....|.+|+..+..++.+.. +.+++|.+.+....+
T Consensus 403 ~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~----------~~~~~l~e~~~~l~~ 472 (1293)
T KOG0996|consen 403 REEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLE----------KEERELDEILDSLKQ 472 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhh
Confidence 3445677777777777777665542 33355555555554444443 333555555555555
Q ss_pred HHHHHHHHHH---HHHHHhhHHHHhhHHHHHHHHhhHHHHH---HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHH
Q 004412 188 IAEELRENAK---QEAQEHSNEIRKHKTAFIELVSNQRQLE---AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSL 261 (755)
Q Consensus 188 ~~~eLrE~ak---rEaqehS~dl~Khk~a~lEl~s~QrqlE---aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~ 261 (755)
-.+-+++... .++.--+.++ -++-.|+.-++-+|+ -....+.+.+++.+.-|.+.++...+-...+-++-.
T Consensus 473 ~t~~~~~e~~~~ekel~~~~~~~---n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~ 549 (1293)
T KOG0996|consen 473 ETEGIREEIEKLEKELMPLLKQV---NEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKE 549 (1293)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443221 1111111111 111123344444444 334567788888888888888888888888888888
Q ss_pred HHHHHhhhhhhhHHHHHHHHh
Q 004412 262 EIVKMRKDLDQKDKILSAMLR 282 (755)
Q Consensus 262 El~klRkd~e~KDkilSaMLr 282 (755)
+|..+..++.++.+-|-.+..
T Consensus 550 ~l~~~k~e~~~~~k~l~~~~~ 570 (1293)
T KOG0996|consen 550 ELPSLKQELKEKEKELPKLRK 570 (1293)
T ss_pred hhhhHHHHHHHHHHhHHHHHH
Confidence 888888888888777766654
No 51
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=80.62 E-value=56 Score=31.48 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004412 168 LEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLV 245 (755)
Q Consensus 168 ~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv 245 (755)
.++......+.+.+|+.+..-+.++.+.++.++.....++. -+.++--.+..++.+++.+-.+|..++..-=..
T Consensus 55 ~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~---- 130 (164)
T PRK14471 55 RKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVAN---- 130 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 33444555667777777777777777777777776555553 233344455566666666666665555332222
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHhhccC
Q 004412 246 LEQKEESVSFAQKLSLEIVKMRKDL---DQKDKILSAMLRKSKS 286 (755)
Q Consensus 246 ~e~kee~~~~~qkLs~El~klRkd~---e~KDkilSaMLrkSkl 286 (755)
-+..+|.++. .+.+ ++-+++|..++.+..+
T Consensus 131 -----la~~~a~kil------~~~l~~~~~~~~lid~~i~~~~~ 163 (164)
T PRK14471 131 -----LSVEIAEKVL------RKELSNKEKQHKLVEKMLGDVKL 163 (164)
T ss_pred -----HHHHHHHHHH------HHHcCcHhHHHHHHHHHHHhcCC
Confidence 2344444443 3333 2236788888876654
No 52
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=79.90 E-value=52 Score=34.35 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=41.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 143 KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENA 196 (755)
Q Consensus 143 k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~a 196 (755)
|-.+|+=|+.+|+|-..=+..|+-+|..-+...+++..++...+....+|+.++
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~ 61 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL 61 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455678888888887777777777777777778888888888888888887755
No 53
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=79.78 E-value=66 Score=31.74 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh--HHHHHHHHhhHHHHHHHHHHHHHHH
Q 004412 170 EDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKH--KTAFIELVSNQRQLEAELGRAHRQV 235 (755)
Q Consensus 170 ee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Kh--k~a~lEl~s~QrqlEaeL~rA~~~l 235 (755)
+......+.+.+|..+..-+.++.+.++.+++.-...+... .++--.+.+++.+++.+=.+|..++
T Consensus 76 eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l 143 (184)
T PRK13455 76 EAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAV 143 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666677777777777777766666543333211 1111233444444444444444443
No 54
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=79.24 E-value=49 Score=39.95 Aligned_cols=59 Identities=31% Similarity=0.400 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004412 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHS 204 (755)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS 204 (755)
-|.+|+++..+.|...........+.++...+++.++...+.--..+.+.+++++++..
T Consensus 521 li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l 579 (782)
T PRK00409 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAI 579 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333333332222333333333444444444444444444444444444433
No 55
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=79.00 E-value=41 Score=40.52 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 004412 143 KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEI 207 (755)
Q Consensus 143 k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl 207 (755)
-++-|.+|+++..+.|.......+...+.+...++++.++...++--.++.+.|++|+++...+.
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a 577 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKAL 577 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444334444444555555555555555555555555555555544333
No 56
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=78.62 E-value=65 Score=31.05 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004412 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVE 236 (755)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~ 236 (755)
+..++......+.+.+|..+..-+.++.+.++.+++....++. .+.++--.+..++.+++.+-.+|..+|.
T Consensus 53 ~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~ 125 (164)
T PRK14473 53 KVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELK 125 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777888888888888888888877776444442 2333333455555555555555555553
No 57
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=77.66 E-value=61 Score=30.18 Aligned_cols=71 Identities=24% Similarity=0.256 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004412 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVE 236 (755)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~ 236 (755)
+..++......+.+.+|..+..-+.++++.++.++......+. .+.++--.+.+++.+++.+-..|..++.
T Consensus 50 ~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~ 122 (140)
T PRK07353 50 ERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLE 122 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666788888888888888888888887777555553 2333333445555555555555544443
No 58
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.64 E-value=1.6e+02 Score=35.12 Aligned_cols=99 Identities=27% Similarity=0.386 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh---chhhHHHHHHHHHHHHHHHhh
Q 004412 87 EREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKK---KDESISELNEKLKDMELLVRS 163 (755)
Q Consensus 87 E~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~---k~~~i~EL~~kLkE~E~l~~~ 163 (755)
|.-|+-|+.-|.-|-| |+.-.| .++..|+|.|...|++|..++..-+.. -.++.+.|.-...-+..-+-+
T Consensus 312 er~IerLkeqr~rder--E~~EeI-----e~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~ 384 (654)
T KOG4809|consen 312 ERIIERLKEQRERDER--ERLEEI-----ESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKS 384 (654)
T ss_pred HHHHHHhcchhhhhHH--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 4556666655544443 455555 356789999999999998877664431 112333333333333333334
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 164 KDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (755)
Q Consensus 164 kdka~Eee~~k~keleekLa~aEk~~~eL 192 (755)
.|.++|.-..+|-.++..|.+|-+++.+-
T Consensus 385 leIalEqkkEec~kme~qLkkAh~~~dda 413 (654)
T KOG4809|consen 385 LEIALEQKKEECSKMEAQLKKAHNIEDDA 413 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 45666677777778888888887777654
No 59
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=77.56 E-value=74 Score=31.11 Aligned_cols=67 Identities=27% Similarity=0.264 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh--hHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004412 169 EEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRK--HKTAFIELVSNQRQLEAELGRAHRQV 235 (755)
Q Consensus 169 Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~K--hk~a~lEl~s~QrqlEaeL~rA~~~l 235 (755)
++.+....+.+.+|+.+..-+.+++..++.+++.-..++.. +.++--....++.+++.+-..|..++
T Consensus 67 ~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l 135 (174)
T PRK07352 67 RQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQL 135 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666777777777777777777666664444431 11222234444444444444444444
No 60
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.88 E-value=96 Score=32.65 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHH
Q 004412 225 EAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQM 293 (755)
Q Consensus 225 EaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKem 293 (755)
..+|.-...|+.+.+..+.+....+......++.+-.|+..|+-+++ .+...|+--+.+..-+-|+
T Consensus 52 ~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in---~~R~e~lgl~~Lp~l~eE~ 117 (230)
T PF10146_consen 52 VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN---ELRKEYLGLEPLPSLEEEE 117 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcCCCCCCcccccc
Confidence 34444445555555556655555666666666666666666655543 2333334445554444333
No 61
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.29 E-value=1.6e+02 Score=34.30 Aligned_cols=158 Identities=19% Similarity=0.239 Sum_probs=92.4
Q ss_pred HhhhhhhhhhhhHHHhhhhh--hh----------------hhHHHHHHHHHHHHHHHHHHHHhhh---------------
Q 004412 95 KLRHEDAKANEKVVGIFAAQ--EQ----------------SWFSERKQLRQQIGALINELRILDK--------------- 141 (755)
Q Consensus 95 krR~EDAKANeKVv~IfAsh--eq----------------sW~~ErKrLr~qI~al~~E~~~le~--------------- 141 (755)
.++..--++|+---.|+.+- .+ .--.+|-.+-.++..|...+..++.
T Consensus 172 s~~~~a~~snsptkriss~~~~nssg~ssn~~~tedl~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqE 251 (502)
T KOG0982|consen 172 SVKKDAERSNSPTKRISSSSSFNSSGKSSNKLETEDLLVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQE 251 (502)
T ss_pred cccchhhccCchhhhhhhhhhcccccccccccchhhhhhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHH
Confidence 34445556777777776221 11 1123444555555555555555553
Q ss_pred --hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHh
Q 004412 142 --KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVS 219 (755)
Q Consensus 142 --~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s 219 (755)
+-..++-.|+++++|+|.-+. ..+.++.+.++++..|+.....+..|.=++--+-+.+-.++|| +.+-=|.+
T Consensus 252 nlqLvhR~h~LEEq~reqElrae---E~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelR---s~~arlks 325 (502)
T KOG0982|consen 252 NLQLVHRYHMLEEQRREQELRAE---ESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELR---SLIARLKS 325 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 234478889999999999997 8899999999999888776655554442222233333233333 33334556
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHH
Q 004412 220 NQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSL 261 (755)
Q Consensus 220 ~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~ 261 (755)
+-..|+.+.-|...+|++.+--|. .--+.++-|.+.|+-
T Consensus 326 l~dklaee~qr~sd~LE~lrlql~---~eq~l~~rm~d~Lrr 364 (502)
T KOG0982|consen 326 LADKLAEEDQRSSDLLEALRLQLI---CEQKLRVRMNDILRR 364 (502)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 666667777777777777765553 223344555555443
No 62
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.05 E-value=2.3e+02 Score=35.93 Aligned_cols=204 Identities=23% Similarity=0.310 Sum_probs=99.2
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhhhH-----HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-------hhchh
Q 004412 78 KLSQKLDAAEREIEELKKLRHEDAKANEKV-----VGIFAAQEQSWFSERKQLRQQIGALINELRILD-------KKKDE 145 (755)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~EDAKANeKV-----v~IfAsheqsW~~ErKrLr~qI~al~~E~~~le-------~~k~~ 145 (755)
.|.--+....+.++-||-+|.||- +|+ +.|---+=|-|++ ++-.++..|.+++-..+ ..+++
T Consensus 228 eLr~QvrdLtEkLetlR~kR~EDk---~Kl~ElekmkiqleqlqEfkS---kim~qqa~Lqrel~raR~e~keaqe~ke~ 301 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKRAEDK---AKLKELEKMKIQLEQLQEFKS---KIMEQQADLQRELKRARKEAKEAQEAKER 301 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556777777888888898883 344 3455555566643 55555555555554433 33333
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHhh
Q 004412 146 SISELNEKLKDMELLVRSKDRVLEED-----EQKRKELEEKISIAEKIAEELREN----------------AKQEAQEHS 204 (755)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee-----~~k~keleekLa~aEk~~~eLrE~----------------akrEaqehS 204 (755)
...++-+--.-+|.+-. ||++-|| +..-.-+.||+-.++-..+=||+. .+-|-|| .
T Consensus 302 ~k~emad~ad~iEmaTl--dKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN-~ 378 (1243)
T KOG0971|consen 302 YKEEMADTADAIEMATL--DKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQN-A 378 (1243)
T ss_pred HHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHH-H
Confidence 33333333333333333 3444444 333355566666666555444431 1123333 1
Q ss_pred HHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHH-----HH
Q 004412 205 NEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKIL-----SA 279 (755)
Q Consensus 205 ~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkil-----Sa 279 (755)
+-|+|++=|+----+--..--++.+.+++.++|+..+.-.+|.-+.=+..+-+=|+-|+ ||=|..+ =.
T Consensus 379 ----rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk---EQVDAAlGAE~MV~ 451 (1243)
T KOG0971|consen 379 ----RLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK---EQVDAALGAEEMVE 451 (1243)
T ss_pred ----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcHHHHHH
Confidence 44555544432222222334466666667777766555555433333222222233332 2233322 23
Q ss_pred HHhhccCChHHHHHHHHH
Q 004412 280 MLRKSKSDTAEKQMLLKE 297 (755)
Q Consensus 280 MLrkSklD~~EKemLlrE 297 (755)
+|---++..+||=+||.|
T Consensus 452 qLtdknlnlEekVklLee 469 (1243)
T KOG0971|consen 452 QLTDKNLNLEEKVKLLEE 469 (1243)
T ss_pred HHHhhccCHHHHHHHHHH
Confidence 455556667776666653
No 63
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=75.81 E-value=2.5e+02 Score=36.25 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 004412 225 EAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAM 280 (755)
Q Consensus 225 EaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaM 280 (755)
+.++..+..++.++..++..+.+.... +++.|-.+|..+++.++.-.+-+..+
T Consensus 895 ~~e~~~~~~e~~~a~~~l~~l~e~l~~---~~eel~a~L~e~r~rL~~l~~el~~~ 947 (1353)
T TIGR02680 895 AEDAAEARAEAEEASLRLRTLEESVGA---MVDEIRARLAETRAALASGGRELPRL 947 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444433221 25666666666666666655555443
No 64
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=73.33 E-value=95 Score=30.31 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004412 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQV 235 (755)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l 235 (755)
+...+......+.+.+|+.+..-+.++...++.+++.-..++. -+.++--.+..++.+++.+-.+|..++
T Consensus 55 ~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el 126 (167)
T PRK14475 55 RLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADV 126 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677777888888888887877777766444432 122222233444444555544444444
No 65
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=72.68 E-value=85 Score=29.47 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh--HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004412 167 VLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKH--KTAFIELVSNQRQLEAELGRAHRQVE 236 (755)
Q Consensus 167 a~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Kh--k~a~lEl~s~QrqlEaeL~rA~~~l~ 236 (755)
..++......+.+.+|..+..-+.++++.++.++.....++... .++---+..++.+++.+-.+|..++.
T Consensus 41 ~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~ 112 (147)
T TIGR01144 41 AKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELR 112 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555567777788888888888777777776655444322 12222344455555555555555443
No 66
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=72.62 E-value=1e+02 Score=30.28 Aligned_cols=71 Identities=28% Similarity=0.329 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 004412 172 EQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFI--ELVSNQRQLEAELGRAHRQVEARKEEL 242 (755)
Q Consensus 172 ~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~l--El~s~QrqlEaeL~rA~~~l~a~~~EL 242 (755)
+.-..+.+.+|..+..-+.++.+.|++++..-..++.++-+..+ -...++.+++.+..+|..+|...=.++
T Consensus 57 ~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~l 129 (161)
T COG0711 57 QALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAEL 129 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566667777777777777887777776766666555554 566677777777777777776554444
No 67
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=71.87 E-value=3e+02 Score=35.49 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=27.5
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhh
Q 004412 77 CKLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAA 113 (755)
Q Consensus 77 ~~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAs 113 (755)
..+..+|...+..+..|+.....--.-|..+..+-+.
T Consensus 233 ~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~ 269 (1353)
T TIGR02680 233 DEYRDELERLEALERALRNFLQRYRRYARTMLRRRAT 269 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888777777656555443
No 68
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=69.89 E-value=1.2e+02 Score=30.17 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 004412 170 EDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEI 207 (755)
Q Consensus 170 ee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl 207 (755)
+.+....+.+.+|..+..-+.++.+.++.+++....++
T Consensus 80 eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~ 117 (181)
T PRK13454 80 KAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVA 117 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777777777766666544333
No 69
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=69.35 E-value=2.9e+02 Score=34.18 Aligned_cols=175 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHHH-----------HHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh---h
Q 004412 77 CKLSQKLDAAEREI-----------EELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDK---K 142 (755)
Q Consensus 77 ~~L~~kL~~AE~ei-----------~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~---~ 142 (755)
....||++++|.-+ +++|..|.|+|-+=-| +|=+.=...|.+|+.|=..|-+ .
T Consensus 405 ~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~-------------DeLaEkdE~I~~lm~EGEkLSK~ql~ 471 (961)
T KOG4673|consen 405 EEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK-------------DELAEKDEIINQLMAEGEKLSKKQLA 471 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh-------------HHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHH
Q 004412 143 KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQR 222 (755)
Q Consensus 143 k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~Qr 222 (755)
...-|+.|..|.+|-|-|+.-+-+.|-.-+-...-|..=|+.-|.+.-.++|+..+ |-+++-..+.-..+++.--.
T Consensus 472 qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k----~~ae~~rq~~~~~~sr~~~~ 547 (961)
T KOG4673|consen 472 QSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEK----HQAELTRQKDYYSNSRALAA 547 (961)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHH---HHHH--HhhhhhHHHHHHHHHHHHHHhh
Q 004412 223 QLEAELGRAHRQVEARKEEL---DLVL--EQKEESVSFAQKLSLEIVKMRK 268 (755)
Q Consensus 223 qlEaeL~rA~~~l~a~~~EL---~sv~--e~kee~~~~~qkLs~El~klRk 268 (755)
.||+.+.---+-++.++.-| -.+- ++++.+..+||-+.+==.+|++
T Consensus 548 ~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~ 598 (961)
T KOG4673|consen 548 ALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSK 598 (961)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 70
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=68.03 E-value=1.6e+02 Score=30.88 Aligned_cols=61 Identities=44% Similarity=0.601 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 004412 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEI 207 (755)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl 207 (755)
.-.+|..+|..++.=......++.+...+-..|++++..++..+..| +.-..++.+....|
T Consensus 6 ~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~L-e~k~~eaee~~~rL 66 (246)
T PF00769_consen 6 EKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEEL-EQKRQEAEEEKQRL 66 (246)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34566666666665554444555566666667777777777666655 33334444434333
No 71
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=67.29 E-value=1.3e+02 Score=29.57 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004412 171 DEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEA 237 (755)
Q Consensus 171 e~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a 237 (755)
......+.+.+|..+..-+.++.+.++.+++..-.++ +..++.+.+..+.+|...++.
T Consensus 72 a~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~i---------i~~A~~ea~~~~~~a~~~ie~ 129 (167)
T PRK08475 72 SKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKI---------EKQTKDDIENLIKSFEELMEF 129 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777888888777777776633222 234444445555555444443
No 72
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=67.08 E-value=4.6e+02 Score=35.66 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=37.4
Q ss_pred HHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHH
Q 004412 414 LEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQ 483 (755)
Q Consensus 414 IeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~q 483 (755)
|.--..+..--.|.||+=|-..--+|-.-+-|...++.|+.++...-+......-+=..|+.|+..|+..
T Consensus 1099 i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~ 1168 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRD 1168 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444556666666666666666666666677776666665333333333333444444444433
No 73
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=66.64 E-value=1.3e+02 Score=29.02 Aligned_cols=38 Identities=32% Similarity=0.305 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004412 167 VLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHS 204 (755)
Q Consensus 167 a~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS 204 (755)
..++......+.+.+|..+..-+.++...++.+++.-.
T Consensus 48 ~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~~~ 85 (159)
T PRK09173 48 LREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEALT 85 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566667777777777777777766666533
No 74
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=64.75 E-value=2e+02 Score=30.75 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhhh---chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 124 QLRQQIGALINELRILDKK---KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEA 200 (755)
Q Consensus 124 rLr~qI~al~~E~~~le~~---k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEa 200 (755)
+|.+.++-..+++..+++. ..+.+.+++..+++++.-+-.-...+-+.+.+.+.++.+| .+-+...++ ..+++|.
T Consensus 21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~-~aL~~E~ 98 (239)
T COG1579 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDEREL-RALNIEI 98 (239)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHH-HHHHHHH
Confidence 3444444444444443332 2233444444444444444211133334455556666666 333444444 2334444
Q ss_pred HH
Q 004412 201 QE 202 (755)
Q Consensus 201 qe 202 (755)
+-
T Consensus 99 ~~ 100 (239)
T COG1579 99 QI 100 (239)
T ss_pred HH
Confidence 43
No 75
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.88 E-value=3e+02 Score=32.41 Aligned_cols=149 Identities=24% Similarity=0.295 Sum_probs=85.6
Q ss_pred hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-hhHHHHH----H
Q 004412 142 KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR-KHKTAFI----E 216 (755)
Q Consensus 142 ~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~-Khk~a~l----E 216 (755)
+-....+||+..++=++.++...+ .=+..|++.+....+++-.-- |-+..| +||-+.+ -
T Consensus 266 q~~e~~selE~llklkerl~e~l~-----------dgeayLaKL~~~l~~~~~~~~-----~ltqqwed~R~pll~kkl~ 329 (521)
T KOG1937|consen 266 QFEEQNSELEKLLKLKERLIEALD-----------DGEAYLAKLMGKLAELNKQME-----ELTQQWEDTRQPLLQKKLQ 329 (521)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcC-----------ChHhHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHH
Confidence 345566677766666666664222 123344444444433322111 112223 6666653 2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-----hhhhhhHHHHHHHHhhccCChHHH
Q 004412 217 LVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMR-----KDLDQKDKILSAMLRKSKSDTAEK 291 (755)
Q Consensus 217 l~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klR-----kd~e~KDkilSaMLrkSklD~~EK 291 (755)
|+..+.-+|-+=.+ .+.+.-..+.|.++.+.......++.+|..|+.++= +...|.=+-|-.|.||- +
T Consensus 330 Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq------~ 402 (521)
T KOG1937|consen 330 LREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQ------E 402 (521)
T ss_pred HHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHH------H
Confidence 33333333333334 566777788899999999988999999999999884 45555566666777664 4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 004412 292 QMLLKEVKISKAKRRQAELETE 313 (755)
Q Consensus 292 emLlrEvk~~kAkrK~AE~E~e 313 (755)
+|+.|=+.--++=+|+-+-+.+
T Consensus 403 ~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 403 QDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444555555554443
No 76
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.36 E-value=1.9e+02 Score=30.50 Aligned_cols=99 Identities=27% Similarity=0.351 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHhhHHHHHHHHhhHH
Q 004412 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRE---NAKQEAQEHSNEIRKHKTAFIELVSNQR 222 (755)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE---~akrEaqehS~dl~Khk~a~lEl~s~Qr 222 (755)
.|.+++.+..+++.+... +-++ .+-+...+++..|++. .+..|--.|..+|+-=..-+-.|..--.
T Consensus 2 ~i~~ir~K~~~lek~k~~----i~~e-------~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk 70 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNE----ILQE-------VESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIK 70 (230)
T ss_pred cHHHHHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999888888751 1111 1222233333334333 3345555666666533333334444444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 004412 223 QLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKD 269 (755)
Q Consensus 223 qlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd 269 (755)
+++.+..+....+...-.|+. .|.++|..||++
T Consensus 71 qa~~er~~~~~~i~r~~eey~--------------~Lk~~in~~R~e 103 (230)
T PF10146_consen 71 QAESERNKRQEKIQRLYEEYK--------------PLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 455555555555544444554 889999999999
No 77
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.01 E-value=4.3e+02 Score=33.93 Aligned_cols=232 Identities=19% Similarity=0.293 Sum_probs=111.5
Q ss_pred hhHHhHHHHHHHHHHHHHHhh--hhhhhhhh--hH-------HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchh
Q 004412 77 CKLSQKLDAAEREIEELKKLR--HEDAKANE--KV-------VGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDE 145 (755)
Q Consensus 77 ~~L~~kL~~AE~ei~eLKkrR--~EDAKANe--KV-------v~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~ 145 (755)
+.....|+.+|.||..|+.-- ..|-+++= +- -.+=.+-.+.-.++.+.++..|..+..+|-. +.+
T Consensus 687 ~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike----~~~ 762 (1174)
T KOG0933|consen 687 RAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKE----KER 762 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 445566788888888776421 12222210 00 0011122223334444444444444444433 455
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHhhHHHHH
Q 004412 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEE----------LRENAKQEAQEHSNEIRKHKTAFI 215 (755)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~e----------LrE~akrEaqehS~dl~Khk~a~l 215 (755)
.+..+..+++-.|.-.. .+.-+-.++-++|+-.|..+..-+++ ..+++.-|.-+...++..++.-.-
T Consensus 763 ~~k~~~~~i~~lE~~~~---d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~ 839 (1174)
T KOG0933|consen 763 ALKKCEDKISTLEKKMK---DAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLE 839 (1174)
T ss_pred HHHHHHHHHHHHHHHHh---HhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655555443 11111222223343333333322222 123444444555566667777766
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHH
Q 004412 216 ELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLL 295 (755)
Q Consensus 216 El~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLl 295 (755)
.+..+...|+.+++.....++....+++.+...-.+...+-..+..||..+=. ..++ ++.+-..-.-+++.|-
T Consensus 840 ~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~---~~e~----~~~e~~~~~l~~kkle 912 (1174)
T KOG0933|consen 840 QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLT---SQEK----CLSEKSDGELERKKLE 912 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhh---HHHH----HHHHhhcccchHHHHH
Confidence 77777778888887777777777777764444333333333333333322211 1222 2222233344667777
Q ss_pred HHHHHHHHHHHHhHHHH----HHHHHhhhhh
Q 004412 296 KEVKISKAKRRQAELET----ERWKAASQSR 322 (755)
Q Consensus 296 rEvk~~kAkrK~AE~E~----erWkrlaE~r 322 (755)
.||..-+...+-+..+. ...-||+.++
T Consensus 913 ~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek 943 (1174)
T KOG0933|consen 913 HEVTKLESEKANARKEVEKLLKKHEWIGDEK 943 (1174)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHhccchhHHH
Confidence 77776665555544443 3344566554
No 78
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=62.59 E-value=1.7e+02 Score=32.18 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=43.3
Q ss_pred cchhHHHHHHHHHHHHHHhhcCCCCC-CCcCCcc-chhhHHHHHHHHHHHhhhhhhhhhcHHHHHHHHHH
Q 004412 614 LGVSYKLKRLKQQLLMLERFTGKSGE-DTESNDD-GIKGLLSLISLLNKQVGRYQSLQGKIDDICKRLHE 681 (755)
Q Consensus 614 lgVSyKikrLkqqll~lErl~g~~~e-~~~~~~~-~~r~~~~~~sll~Kqv~RYQsL~~KiDdLC~Rm~~ 681 (755)
++...|+--|++-|-.||++.|-+.. ...-+.+ +++++.-.+.-|..++.=-+. .++|-+-+||..
T Consensus 205 ~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~--~~Ld~i~~rl~~ 272 (388)
T PF04912_consen 205 SQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDP--AKLDSIERRLKS 272 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCH--HHHHHHHHHHHH
Confidence 45678999999999999999999332 1122222 566677777777777655432 456666666654
No 79
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=62.06 E-value=4.4e+02 Score=33.72 Aligned_cols=55 Identities=27% Similarity=0.402 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHH--HHHHHHHHHHHHHHHHHHhh
Q 004412 85 AAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFS--ERKQLRQQIGALINELRILD 140 (755)
Q Consensus 85 ~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~--ErKrLr~qI~al~~E~~~le 140 (755)
-..+-..++.+.+++=+-| -.=-|||-+++.--.. |++..--+|..+..++..++
T Consensus 405 llKd~~~EIerLK~dl~Aa-ReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~ 461 (1041)
T KOG0243|consen 405 LLKDLYEEIERLKRDLAAA-REKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLE 461 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHh-HhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555544443333 3345888888877444 66666667777777666643
No 80
>PRK09039 hypothetical protein; Validated
Probab=62.03 E-value=2.5e+02 Score=30.89 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 004412 127 QQIGALINELRI 138 (755)
Q Consensus 127 ~qI~al~~E~~~ 138 (755)
++|....+|+..
T Consensus 46 ~~i~~~~~eL~~ 57 (343)
T PRK09039 46 REISGKDSALDR 57 (343)
T ss_pred HHHhhHHHHHHH
Confidence 344444444433
No 81
>PRK12704 phosphodiesterase; Provisional
Probab=59.08 E-value=3.5e+02 Score=31.59 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhhhh-HHHHHHHHhhccCChHH-HHHHHHHHH
Q 004412 258 KLSLEIVKMRKDLDQK-DKILSAMLRKSKSDTAE-KQMLLKEVK 299 (755)
Q Consensus 258 kLs~El~klRkd~e~K-DkilSaMLrkSklD~~E-KemLlrEvk 299 (755)
+...++..++++++.+ ......+-+-|.++.+| |+.|+..+.
T Consensus 121 ~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~ 164 (520)
T PRK12704 121 QKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVE 164 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4445555555554443 33445566778898887 455555443
No 82
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=59.00 E-value=3.2e+02 Score=31.11 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004412 176 KELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQV 235 (755)
Q Consensus 176 keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l 235 (755)
.+.+.+|+.+..-+.++.+.++.++++...++. .+.++--....++.++|.|-.+|..++
T Consensus 56 ~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~el 117 (445)
T PRK13428 56 QAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQL 117 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777777666555553 223333345555555666555555555
No 83
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=58.95 E-value=95 Score=28.10 Aligned_cols=65 Identities=35% Similarity=0.447 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 004412 169 EEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEEL 242 (755)
Q Consensus 169 Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL 242 (755)
.+......+.+.+|..++.-+.++.+.++.++......+. ..++.+++..+..|..++...+...
T Consensus 47 ~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~---------~ea~~~~~~~~~~a~~~i~~e~~~a 111 (132)
T PF00430_consen 47 EEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEIL---------AEAEKEAERIIEQAEAEIEQEKEKA 111 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677778888888887777777777666443332 2234444455555555554444433
No 84
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=58.72 E-value=41 Score=29.54 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHHHh
Q 004412 127 QQIGALINELRILDK---KKDESISELNEKLKDMELLVR 162 (755)
Q Consensus 127 ~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l~~ 162 (755)
.+|..|+.|-..|.. +...-|..|+.+.++.|.-+.
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~ 50 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIK 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 578889988888775 466788888888888877665
No 85
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=58.69 E-value=2.7e+02 Score=30.15 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=40.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 004412 229 GRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKIS 301 (755)
Q Consensus 229 ~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~ 301 (755)
...-..+.+.+.+|..+-........-+.++..+...++.++.+-++++. .....+..|-..|-.++...
T Consensus 219 ~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~---~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 219 AEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE---ECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHH
Confidence 33334444445555555555555555555777777777777777776654 34556777666666555544
No 86
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=58.18 E-value=1.9e+02 Score=28.24 Aligned_cols=111 Identities=25% Similarity=0.275 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHH
Q 004412 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLE 225 (755)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlE 225 (755)
.+.+++.++++++.-...++..|..=.+|...|+..|..++.-..+++..+. + + .++....=-|-..=..||
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le----e-~---~~~~~~~E~l~rriq~LE 86 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE----E-S---EKRKSNAEQLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-H---HHHHHhHHHHHhhHHHHH
Confidence 4566777777777766655555555567777777777666666655544332 1 1 122222224555556899
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 004412 226 AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIV 264 (755)
Q Consensus 226 aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~ 264 (755)
.+|..+-..|..+...|..+...-+...-.++.|-.+..
T Consensus 87 eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~ 125 (143)
T PF12718_consen 87 EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERD 125 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Confidence 999999999999999999888888877777777665543
No 87
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=57.83 E-value=3.5e+02 Score=31.29 Aligned_cols=65 Identities=26% Similarity=0.325 Sum_probs=43.5
Q ss_pred hhHHHHHHHHhhHHHHH---HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 004412 209 KHKTAFIELVSNQRQLE---AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQK 273 (755)
Q Consensus 209 Khk~a~lEl~s~QrqlE---aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~K 273 (755)
.|-.++-||.+.+.+|+ -++..++..-+.+-.+.+.+.-.-......+..|+.||..++..++.-
T Consensus 124 q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 124 QYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555557777776665 455555555555555555555666666777888889998888877763
No 88
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=56.39 E-value=4.4e+02 Score=31.96 Aligned_cols=42 Identities=26% Similarity=0.515 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHh
Q 004412 120 SERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVR 162 (755)
Q Consensus 120 ~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~ 162 (755)
.|.++|..+..-..+|+..++ .++..+..|.+++-+.+.+..
T Consensus 121 ~e~~~lk~~lee~~~el~~~k-~qq~~v~~l~e~l~k~~~~~~ 162 (629)
T KOG0963|consen 121 EENEELKEELEEVNNELADLK-TQQVTVRNLKERLRKLEQLLE 162 (629)
T ss_pred hhHHHHHHHHHHHHHHHhhhh-hhHHHHHhHHHHHHHHHHHHH
Confidence 356678888888888877766 455567777777777776665
No 89
>PRK01156 chromosome segregation protein; Provisional
Probab=55.38 E-value=4.5e+02 Score=31.76 Aligned_cols=7 Identities=57% Similarity=0.686 Sum_probs=2.9
Q ss_pred HhhhhHH
Q 004412 409 RHHLELE 415 (755)
Q Consensus 409 rH~~EIe 415 (755)
-|+.++-
T Consensus 867 sh~~~~~ 873 (895)
T PRK01156 867 SHHRELL 873 (895)
T ss_pred ECchHHH
Confidence 3444433
No 90
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.47 E-value=1.2e+02 Score=26.85 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 004412 222 RQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRK 283 (755)
Q Consensus 222 rqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrk 283 (755)
.+||.....|+..+..-+.|++.+-+.+..-..-...|..|..+++.+-+.=..=|.++|.|
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999888888888899999999998888877778888765
No 91
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=54.44 E-value=2.6e+02 Score=28.73 Aligned_cols=140 Identities=23% Similarity=0.313 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 004412 127 QQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNE 206 (755)
Q Consensus 127 ~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~d 206 (755)
++|.-|.+++..+...-..-. -=++-|+.+...-. +|+..-+.-..+|-.-++....-+--||+.+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~-~ENk~Lk~lq~Rq~---kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~L---------- 77 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELR-KENKTLKQLQKRQE---KALQKYEDTEAELPQLLQRHNEEVRVLRERL---------- 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH----------
Confidence 456666666666553221111 11233444433333 4444444444445544555544444444433
Q ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q 004412 207 IRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKE-ESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSK 285 (755)
Q Consensus 207 l~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~ke-e~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSk 285 (755)
|+.+...-++-..-++.+.+|-+ .+.++..+..-.+ .+-.-..+|...|..+...++++|+-|+.|-++..
T Consensus 78 -R~~q~~~r~~~~klk~~~~el~k-------~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 78 -RKSQEQERELERKLKDKDEELLK-------TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333332233333333344443 3333333322222 23333678999999999999999999999988776
Q ss_pred CCh
Q 004412 286 SDT 288 (755)
Q Consensus 286 lD~ 288 (755)
+..
T Consensus 150 L~~ 152 (194)
T PF15619_consen 150 LEN 152 (194)
T ss_pred HHh
Confidence 644
No 92
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=54.06 E-value=5.1e+02 Score=32.03 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=47.3
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhhhhhh---------hhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhH
Q 004412 77 CKLSQKLDAAEREIEELKKLRHEDAKAN---------EKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESI 147 (755)
Q Consensus 77 ~~L~~kL~~AE~ei~eLKkrR~EDAKAN---------eKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i 147 (755)
..|...| .+..++..|... .-+++ ++..+=|. +-..|+.++..++..+.+.+-.++.+-+..-
T Consensus 77 ~~LqeEL-r~q~e~~rL~~~---~e~~~~e~e~l~~ld~~~~q~~----rl~~E~er~~~El~~lr~~lE~~q~~~e~~q 148 (775)
T PF10174_consen 77 QALQEEL-RAQRELNRLQQE---LEKAQYEFESLQELDKAQEQFE----RLQAERERLQRELERLRKTLEELQLRIETQQ 148 (775)
T ss_pred HHHHHHH-HHhhHHHHHHHH---hhhcccccchhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677 666666655543 22233 23222222 2345888888888888888888877666555
Q ss_pred HHHHHHHHHHHHHHh
Q 004412 148 SELNEKLKDMELLVR 162 (755)
Q Consensus 148 ~EL~~kLkE~E~l~~ 162 (755)
.+|...-.+.+.|..
T Consensus 149 ~~l~~~~eei~kL~e 163 (775)
T PF10174_consen 149 QTLDKADEEIEKLQE 163 (775)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555553
No 93
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=53.36 E-value=2.1e+02 Score=27.42 Aligned_cols=61 Identities=23% Similarity=0.382 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 004412 173 QKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEEL 242 (755)
Q Consensus 173 ~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL 242 (755)
....+.+..|+.+..-+..+++.+..++++-+.. .+..++.+++.++..|..++..-+..+
T Consensus 59 ~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~---------~~~~A~~~~~~~~~~a~~~l~~e~~~~ 119 (141)
T PRK08476 59 EIEHEIETILKNAREEANKIRQKAIAKAKEEAEK---------KIEAKKAELESKYEAFAKQLANQKQEL 119 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666555655555555555543322 234445555555555555554444433
No 94
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.21 E-value=6.2e+02 Score=32.70 Aligned_cols=227 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHH
Q 004412 84 DAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDK---KKDESISELNEKLKDMELL 160 (755)
Q Consensus 84 ~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l 160 (755)
...+..+-+|=.+=+.-.++|+.|. +-.+|.+++-..++.-.++++.... +.-+.+.....++++++.+
T Consensus 213 ~q~e~~L~qLfhvE~~i~k~~~els--------~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~ 284 (1141)
T KOG0018|consen 213 AQKEQFLWELFHVEACIEKANDELS--------RLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEK 284 (1141)
T ss_pred HHHHHHHHHHhhhhhhHhhhhHHHH--------HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHH-------
Q 004412 161 VRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHR------- 233 (755)
Q Consensus 161 ~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~------- 233 (755)
+.. -...=....+.-..-.||...++.+ ++++..+++|++++.+-+.-+..|-.+...+|.++..-..
T Consensus 285 l~e-rp~li~~ke~~~~~k~rl~~~~k~i----~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~ln 359 (1141)
T KOG0018|consen 285 LAE-RPELIKVKENASHLKKRLEEIEKDI----ETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELN 359 (1141)
T ss_pred Hhh-hhHHhhcchhhccchhHHHHhhhhH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q ss_pred ----------------------HHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHH
Q 004412 234 ----------------------QVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEK 291 (755)
Q Consensus 234 ----------------------~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EK 291 (755)
.|+..+.+..+-....+.--....+|...+..++..++-.++-+..|+-+.+--.+.=
T Consensus 360 l~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~ 439 (1141)
T KOG0018|consen 360 LKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSY 439 (1141)
T ss_pred cchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHH-HHHHHhhhhhh
Q 004412 292 QMLLKEVKISKAKRRQAELET-ERWKAASQSRH 323 (755)
Q Consensus 292 emLlrEvk~~kAkrK~AE~E~-erWkrlaE~rh 323 (755)
+.+..++.........++.+. +.=+.+.+.+|
T Consensus 440 ~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ 472 (1141)
T KOG0018|consen 440 EELKHDLDSLESLVSSAEEEPYELNEELVEVLD 472 (1141)
T ss_pred HHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHH
No 95
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=53.01 E-value=3e+02 Score=29.00 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004412 169 EEDEQKRKELEEKISIAEKIA 189 (755)
Q Consensus 169 Eee~~k~keleekLa~aEk~~ 189 (755)
|+.+++..+|+.||...+.-.
T Consensus 1 E~aEr~k~Ele~rL~q~eee~ 21 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEM 21 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHH
Confidence 455677788888887776555
No 96
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=52.81 E-value=5e+02 Score=31.79 Aligned_cols=13 Identities=8% Similarity=-0.176 Sum_probs=8.3
Q ss_pred HHHhhhhhhhhhH
Q 004412 107 VVGIFAAQEQSWF 119 (755)
Q Consensus 107 Vv~IfAsheqsW~ 119 (755)
..-||++|-....
T Consensus 441 ~~vIitTH~~el~ 453 (782)
T PRK00409 441 AKIIATTHYKELK 453 (782)
T ss_pred CEEEEECChHHHH
Confidence 3567888875443
No 97
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.30 E-value=1.6e+02 Score=35.58 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHHH---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 120 SERKQLRQQIGALINELRILDK---KKDESISELNEKLKDMELLV---RSKDRVLEEDEQKRKELEEKISIAEKIAEELR 193 (755)
Q Consensus 120 ~ErKrLr~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l~---~~kdka~Eee~~k~keleekLa~aEk~~~eLr 193 (755)
.+-+.+...+..|..|...|+. ...+.|..|+.+|.++..=+ .-+++.++.-+++-..|+-+|....+.+++|+
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555554443 23344444444444433222 22344444445555566666666666666665
Q ss_pred HHH
Q 004412 194 ENA 196 (755)
Q Consensus 194 E~a 196 (755)
..+
T Consensus 502 ~~l 504 (652)
T COG2433 502 RKL 504 (652)
T ss_pred HHH
Confidence 444
No 98
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=51.45 E-value=2.3e+02 Score=27.22 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=14.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhHHHH
Q 004412 216 ELVSNQRQLEAELGRAHRQVEARKEEL 242 (755)
Q Consensus 216 El~s~QrqlEaeL~rA~~~l~a~~~EL 242 (755)
++..+..+++.+...+..++.+-=..|
T Consensus 104 ~~~~a~~~l~~e~~~~~~~l~~qv~~~ 130 (141)
T PRK08476 104 KYEAFAKQLANQKQELKEQLLSQMPEF 130 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344455566666666666664433333
No 99
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=51.30 E-value=16 Score=38.58 Aligned_cols=38 Identities=34% Similarity=0.517 Sum_probs=35.7
Q ss_pred HHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhh
Q 004412 429 EGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKL 466 (755)
Q Consensus 429 EaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~l 466 (755)
.-||-|..-+|.|+.+++..+..|.+++..++.||.+|
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999886
No 100
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=50.55 E-value=3.3e+02 Score=28.82 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=29.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 004412 212 TAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (755)
Q Consensus 212 ~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (755)
+-|-+|..+-+.+|.....|...+..+...++
T Consensus 92 eRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e 123 (207)
T PF05546_consen 92 ERFTELYRNDHENEQAEEEAKEALEEAEEKVE 123 (207)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999888887
No 101
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.37 E-value=1e+02 Score=30.69 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCC
Q 004412 226 AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSD 287 (755)
Q Consensus 226 aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD 287 (755)
.+....+.++-+++.||.+++....--..-+..|+.||..||..+.++-.-...=|.|..+.
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k~Gv~ 122 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAEAGIP 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445557788889999988877777777789999999999999988877766666665544
No 102
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=50.30 E-value=2.7e+02 Score=27.63 Aligned_cols=14 Identities=7% Similarity=-0.228 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHHHH
Q 004412 250 EESVSFAQKLSLEI 263 (755)
Q Consensus 250 ee~~~~~qkLs~El 263 (755)
+.+..++.+...++
T Consensus 163 ~~~~~lid~~i~~l 176 (184)
T CHL00019 163 ELHLRTINANIGLL 176 (184)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 103
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=50.01 E-value=4.8e+02 Score=30.47 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhhhhh-HHHHHHHHhhccCChHH-HHHHHHHHH
Q 004412 258 KLSLEIVKMRKDLDQK-DKILSAMLRKSKSDTAE-KQMLLKEVK 299 (755)
Q Consensus 258 kLs~El~klRkd~e~K-DkilSaMLrkSklD~~E-KemLlrEvk 299 (755)
....++..+.++.+.. ......+=+-|.++.+| |+.|+..+.
T Consensus 115 ~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~ 158 (514)
T TIGR03319 115 NKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVE 158 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4444555555544442 23334555668888877 555555543
No 104
>PRK04863 mukB cell division protein MukB; Provisional
Probab=49.46 E-value=7.7e+02 Score=32.71 Aligned_cols=51 Identities=4% Similarity=0.087 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhH
Q 004412 258 KLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAE 309 (755)
Q Consensus 258 kLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE 309 (755)
.+..++...++.+..-+.+ -.++--..++.++-+..+..+....+.....-
T Consensus 408 elQ~el~q~qq~i~~Le~~-~~~~~~~~~SdEeLe~~LenF~aklee~e~qL 458 (1486)
T PRK04863 408 VQQTRAIQYQQAVQALERA-KQLCGLPDLTADNAEDWLEEFQAKEQEATEEL 458 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433 23444567888888877777765554444333
No 105
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=47.95 E-value=5.7e+02 Score=30.76 Aligned_cols=122 Identities=24% Similarity=0.353 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHH---HHHHHHHHHHHHhHHHHHHHHHhhhh
Q 004412 175 RKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLE---AELGRAHRQVEARKEELDLVLEQKEE 251 (755)
Q Consensus 175 ~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlE---aeL~rA~~~l~a~~~EL~sv~e~kee 251 (755)
..+.+++|...|..+.++.+.. .+.+...+.+...|+++.=.++--++|- +||-.+.-.|..-|.+|.+.+-. +.
T Consensus 117 ~~EqEerL~ELE~~le~~~e~~-~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~-Eq 194 (617)
T PF15070_consen 117 NQEQEERLAELEEELERLQEQQ-EDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQS-EQ 194 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHH-HH
Confidence 3566788888888888876654 3455556677778888774444445666 55566666777777666554432 22
Q ss_pred hH--HHHHH---HHHHHHHHhhhhhhhHHHHHHHHhh--------------ccCChHHHHHHHHHH
Q 004412 252 SV--SFAQK---LSLEIVKMRKDLDQKDKILSAMLRK--------------SKSDTAEKQMLLKEV 298 (755)
Q Consensus 252 ~~--~~~qk---Ls~El~klRkd~e~KDkilSaMLrk--------------SklD~~EKemLlrEv 298 (755)
|+ .+..+ |-.++..++.-++-|+.-+..+-.. +--.+.|++.|=+.+
T Consensus 195 ~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~ 260 (617)
T PF15070_consen 195 HVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQL 260 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23333 3334445555566665544443221 112366777777765
No 106
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.81 E-value=5e+02 Score=30.09 Aligned_cols=85 Identities=21% Similarity=0.426 Sum_probs=52.8
Q ss_pred HHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh---chhhHHHHHHHHHHHHHHHhhhhhh
Q 004412 91 EELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKK---KDESISELNEKLKDMELLVRSKDRV 167 (755)
Q Consensus 91 ~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~---k~~~i~EL~~kLkE~E~l~~~kdka 167 (755)
.+|+..+.+.++-|.++..+ ..++.+|..+|..+..++..++.. -...+.++++.+.+.+..+. +
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~--------~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~----~ 105 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQ--------QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN----A 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH----H
Confidence 45556666666666555443 245677888888888888777753 34456667777777777664 2
Q ss_pred hHHH-HHHHHHHHHHHHHHHH
Q 004412 168 LEED-EQKRKELEEKISIAEK 187 (755)
Q Consensus 168 ~Eee-~~k~keleekLa~aEk 187 (755)
++.. +..+..|.+-|+++-.
T Consensus 106 l~~q~r~qr~~La~~L~A~~r 126 (420)
T COG4942 106 LEVQEREQRRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 3333 3444666666766655
No 107
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.66 E-value=6.1e+02 Score=31.07 Aligned_cols=10 Identities=0% Similarity=0.016 Sum_probs=6.8
Q ss_pred HHhhhhhhhh
Q 004412 108 VGIFAAQEQS 117 (755)
Q Consensus 108 v~IfAsheqs 117 (755)
.-||++|-..
T Consensus 437 ~viitTH~~e 446 (771)
T TIGR01069 437 QVLITTHYKE 446 (771)
T ss_pred EEEEECChHH
Confidence 3478888754
No 108
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=46.49 E-value=3.1e+02 Score=27.25 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 004412 227 ELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDL 270 (755)
Q Consensus 227 eL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~ 270 (755)
.+-.+..+.++++.++..+-.....-..--..|..|++.+|.+-
T Consensus 39 ~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 39 NKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555544443333333333334445555555443
No 109
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=46.18 E-value=4.7e+02 Score=29.29 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=13.4
Q ss_pred hHHhHHHHHHHHHHHHHHhhh
Q 004412 78 KLSQKLDAAEREIEELKKLRH 98 (755)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~ 98 (755)
.+..++..++.++..|+.-+.
T Consensus 101 ~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 101 LLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777765543
No 110
>PTZ00491 major vault protein; Provisional
Probab=45.44 E-value=6.6e+02 Score=31.58 Aligned_cols=93 Identities=27% Similarity=0.289 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHH
Q 004412 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLE 225 (755)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlE 225 (755)
.+-+|+.+..-.|.-..++..+.-..+-.+.+.+.-+..|+.=+.-+ +.++..-..-+++.++..|+-...+-+||
T Consensus 700 ~llel~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~a~----~i~~~ael~~~~~~~~~e~~~~~~~~~le 775 (850)
T PTZ00491 700 KLLELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKAL----RIEAEAELEKLRKRQELELEYEQAQNELE 775 (850)
T ss_pred HHHHHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhHHH----HHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45566666666666665544444444444555554444444333222 23333333345677788888888888888
Q ss_pred HHHHHHHHHHHHhHHHH
Q 004412 226 AELGRAHRQVEARKEEL 242 (755)
Q Consensus 226 aeL~rA~~~l~a~~~EL 242 (755)
-+-.+++.++++.+.+=
T Consensus 776 ~~k~~~la~ie~~kf~~ 792 (850)
T PTZ00491 776 IAKAKELADIEATKFER 792 (850)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888887753
No 111
>PHA02562 46 endonuclease subunit; Provisional
Probab=45.07 E-value=4.9e+02 Score=29.22 Aligned_cols=24 Identities=8% Similarity=0.266 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHH
Q 004412 256 AQKLSLEIVKMRKDLDQKDKILSA 279 (755)
Q Consensus 256 ~qkLs~El~klRkd~e~KDkilSa 279 (755)
..++...+..+++.+..+..-|+.
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~ 355 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLIT 355 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554444444
No 112
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=43.92 E-value=6.3e+02 Score=31.59 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHH-------HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHH----HHHHH
Q 004412 194 ENAKQEAQEHSNEIRKHKTAFIELVSNQRQLE-------AELGRAHRQVEARKEELDLVLEQKEESVSFAQ----KLSLE 262 (755)
Q Consensus 194 E~akrEaqehS~dl~Khk~a~lEl~s~QrqlE-------aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~q----kLs~E 262 (755)
..++.++|...+++.+|++..-+....-+.++ ++|-||+..+......-..++-.-+|--.++- --...
T Consensus 138 peveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~ 217 (916)
T KOG0249|consen 138 PEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALED 217 (916)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHH
Confidence 34567788888888888877754444444444 44444444333222222222211111111100 01123
Q ss_pred HHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 004412 263 IVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISK 302 (755)
Q Consensus 263 l~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~k 302 (755)
..+|=+++++=-+++.+|..--+-=..++++|.-|+++.+
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444444555554433334456677777776666
No 113
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=43.67 E-value=50 Score=31.85 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 004412 113 AQEQSWFSERKQLRQQIGALINELRILDKK 142 (755)
Q Consensus 113 sheqsW~~ErKrLr~qI~al~~E~~~le~~ 142 (755)
.-+..|-.||-.|..+|..|.-|.+.++.-
T Consensus 18 rdR~~WeiERaEmkarIa~LEGE~r~~e~l 47 (134)
T PF08232_consen 18 RDRNQWEIERAEMKARIAFLEGERRGQENL 47 (134)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999987753
No 114
>PRK03918 chromosome segregation protein; Provisional
Probab=42.43 E-value=6.7e+02 Score=29.97 Aligned_cols=15 Identities=7% Similarity=0.339 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHh
Q 004412 125 LRQQIGALINELRIL 139 (755)
Q Consensus 125 Lr~qI~al~~E~~~l 139 (755)
|..++..+..++..+
T Consensus 198 l~~~~~~l~~ei~~l 212 (880)
T PRK03918 198 KEKELEEVLREINEI 212 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444433333
No 115
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=42.32 E-value=9.4e+02 Score=31.66 Aligned_cols=49 Identities=33% Similarity=0.302 Sum_probs=26.0
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 004412 78 KLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELR 137 (755)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~ 137 (755)
.|...+...+++++.+++...-.+-.|+||. ..|+.|..+...+..|+.
T Consensus 512 ~l~~~~~~~~eele~~q~~~~~~~~~~~kv~-----------~~rk~le~~~~d~~~e~~ 560 (1317)
T KOG0612|consen 512 KLEALVRQLEEELEDAQKKNDNAADSLEKVN-----------SLRKQLEEAELDMRAESE 560 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHhhhhhhhhHH
Confidence 3444444444455555444444444555554 466667666666655544
No 116
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.49 E-value=5.5e+02 Score=28.70 Aligned_cols=111 Identities=23% Similarity=0.407 Sum_probs=71.3
Q ss_pred hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhH
Q 004412 142 KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQ 221 (755)
Q Consensus 142 ~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~Q 221 (755)
+|+-.|.-|+-+|||-+.-+..+|.+|++ |...|+ +-++-.||=.|-.
T Consensus 65 QKEV~iRHLkakLkes~~~l~dRetEI~e-------LksQL~-------------------------RMrEDWIEEECHR 112 (305)
T PF15290_consen 65 QKEVCIRHLKAKLKESENRLHDRETEIDE-------LKSQLA-------------------------RMREDWIEEECHR 112 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHH-------------------------HHHHHHHHHHHHH
Confidence 56777888899999988888766665543 333333 2333344444432
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 004412 222 RQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKIS 301 (755)
Q Consensus 222 rqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~ 301 (755)
+||+|+ |-.|+.|++ -|-.=|.+||--+-+|||=|---.---+|--.-=|-||.=..+|
T Consensus 113 --VEAQLA-----LKEARkEIk--------------QLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElA 171 (305)
T PF15290_consen 113 --VEAQLA-----LKEARKEIK--------------QLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELA 171 (305)
T ss_pred --HHHHHH-----HHHHHHHHH--------------HHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHH
Confidence 566654 334556665 55566778888888888887766655566555667788766666
Q ss_pred HHHH
Q 004412 302 KAKR 305 (755)
Q Consensus 302 kAkr 305 (755)
+.+-
T Consensus 172 q~g~ 175 (305)
T PF15290_consen 172 QSGS 175 (305)
T ss_pred Hhcc
Confidence 6665
No 117
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.98 E-value=5.1e+02 Score=28.25 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=5.7
Q ss_pred HHHHHHHHHhh
Q 004412 258 KLSLEIVKMRK 268 (755)
Q Consensus 258 kLs~El~klRk 268 (755)
-.+..+.+||+
T Consensus 124 ~~~~~L~~L~k 134 (314)
T PF04111_consen 124 YASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHCHHT
T ss_pred HHHHHHHHHHh
Confidence 44445555554
No 118
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.82 E-value=1e+03 Score=31.67 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=11.7
Q ss_pred cchhhhhHHHHHHHHhhhc
Q 004412 17 SLYPMYFGVSCAFFALRML 35 (755)
Q Consensus 17 ~l~~~YfGVs~Af~AL~~L 35 (755)
.+|..-||.+..+||-.-+
T Consensus 257 dlFk~lI~~~~~~~aad~~ 275 (1486)
T PRK04863 257 DLFKHLITESTNYVAADYM 275 (1486)
T ss_pred HHHHHHhhhhhhhhHHHHh
Confidence 3566667777777754443
No 119
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.65 E-value=2.9e+02 Score=28.72 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004412 175 RKELEEKISIAEKIAEE 191 (755)
Q Consensus 175 ~keleekLa~aEk~~~e 191 (755)
..++.++++..+....+
T Consensus 120 ~~~l~~~~~~~~~~~~~ 136 (206)
T PRK10884 120 TAEMQQKVAQSDSVING 136 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555554444433
No 120
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=40.38 E-value=5.8e+02 Score=31.12 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 004412 289 AEKQMLLKEVKISK 302 (755)
Q Consensus 289 ~EKemLlrEvk~~k 302 (755)
++=.+++++|+..+
T Consensus 699 ~~I~~~v~~ik~i~ 712 (717)
T PF10168_consen 699 EEIDELVKQIKNIK 712 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555554
No 121
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=40.29 E-value=4.3e+02 Score=27.13 Aligned_cols=168 Identities=24% Similarity=0.349 Sum_probs=100.2
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhc------hhhHHHHHHH
Q 004412 80 SQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKK------DESISELNEK 153 (755)
Q Consensus 80 ~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k------~~~i~EL~~k 153 (755)
+.-+....+||.+||+.- ..|+|-+.-.+ .|-++|..-+..+..|...|+..- ...+..++..
T Consensus 26 L~lIksLKeei~emkk~e----~~~~k~m~ei~-------~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~r 94 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKE----ERNEKLMAEIS-------QENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKAR 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788999998843 34445443333 345566666666666665555321 1123333333
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHH
Q 004412 154 LKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHR 233 (755)
Q Consensus 154 LkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~ 233 (755)
++.. .+.+..-+..+..|+.++..++.--.+|..+-..-++++- +++.|- ---||..|..-..
T Consensus 95 l~~~-------ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq-----Qk~~~k-----n~lLEkKl~~l~~ 157 (201)
T PF13851_consen 95 LKEL-------EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ-----QKTGLK-----NLLLEKKLQALSE 157 (201)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----HHHHHHHHHHHHH
Confidence 3322 2555566777889999999999988888776665555532 344442 1236777888888
Q ss_pred HHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 004412 234 QVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILS 278 (755)
Q Consensus 234 ~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilS 278 (755)
.++....+|.+|+.+.-=-...+..++ .++..=++.|+..|.
T Consensus 158 ~lE~keaqL~evl~~~nldp~~~~~v~---~~l~~~l~~KN~~I~ 199 (201)
T PF13851_consen 158 QLEKKEAQLNEVLAAANLDPAALSQVS---KKLEDVLDSKNQTIK 199 (201)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 888889999888876443333333333 334444555655553
No 122
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.80 E-value=7.2e+02 Score=29.58 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=11.5
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhh
Q 004412 260 SLEIVKMRKDLDQKDKILSAMLRK 283 (755)
Q Consensus 260 s~El~klRkd~e~KDkilSaMLrk 283 (755)
..|+..|.+|.+-+..+...+|.+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r 398 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTN 398 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555444443
No 123
>PRK00846 hypothetical protein; Provisional
Probab=39.77 E-value=1.2e+02 Score=27.40 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=47.2
Q ss_pred HHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHHHHhh
Q 004412 419 EQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQFISQL 488 (755)
Q Consensus 419 eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql~~~~ 488 (755)
+|+-|.|+.++ -|+..+|+-++=..--|+.||.-+.+......+|.. .+.-|.++|....
T Consensus 2 ~~~~~~~~~le---~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~-------ql~~L~~rL~~~~ 61 (77)
T PRK00846 2 EQLSLRDQALE---ARLVELETRLSFQEQALTELSEALADARLTGARNAE-------LIRHLLEDLGKVR 61 (77)
T ss_pred chhhHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhc
Confidence 58889998888 589999999999999999999999988777666543 3455666666544
No 124
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.52 E-value=9.3e+02 Score=30.55 Aligned_cols=233 Identities=19% Similarity=0.213 Sum_probs=0.0
Q ss_pred CcCccCcchhhhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHhHHHHHHHHHHHHhhccccchhhhHHhHHHHHHHHH
Q 004412 11 SEEKSDSLYPMYFGVSCAFFALRMLSVAETKDDKWSELHDKMLRGSAQLLGLLVWRVQRDGANGEKCKLSQKLDAAEREI 90 (755)
Q Consensus 11 se~~~~~l~~~YfGVs~Af~AL~~L~~~~~~d~k~~~~lq~MLkgs~~~LglLa~naq~e~~~g~~~~L~~kL~~AE~ei 90 (755)
|.+-..-+.|.|.||-=|=- -+-||+|..=.+|--+...+ +-..|..|-.+.++|-
T Consensus 285 s~~sis~~~p~~~~~~~aep-~kklP~~~TFEDKrkeNy~k-----------------------GqaELerRRq~leeqq 340 (1118)
T KOG1029|consen 285 SANSISGLEPGGVGVVDAEP-PKKLPAPVTFEDKRKENYEK-----------------------GQAELERRRQALEEQQ 340 (1118)
T ss_pred CCCCccccccCcccccccCc-cccCCCCcchhhhhHHhHhh-----------------------hhHHHHHHHHHHHHHH
Q ss_pred HHHHHh-----hhhhhhhhhhHHHhhhhhhhhhHH--------------------HHHHHHHHHHHHHHHHHHhhh---h
Q 004412 91 EELKKL-----RHEDAKANEKVVGIFAAQEQSWFS--------------------ERKQLRQQIGALINELRILDK---K 142 (755)
Q Consensus 91 ~eLKkr-----R~EDAKANeKVv~IfAsheqsW~~--------------------ErKrLr~qI~al~~E~~~le~---~ 142 (755)
+.=+.+ |.|-+|-| -+-+||-|+. |||+=+.+-.+++.|+...|. -
T Consensus 341 qreree~eqkEreE~ekke------rerqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewE 414 (1118)
T KOG1029|consen 341 QREREEVEQKEREEEEKKE------RERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWE 414 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhhHHHHHHHHHHHHHHH--hhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHH
Q 004412 143 KDESISELNEKLKDMELLV--RSKDRVLEED----EQKRKELEEKISIAEKIAEELRE----------NAKQEAQEHSNE 206 (755)
Q Consensus 143 k~~~i~EL~~kLkE~E~l~--~~kdka~Eee----~~k~keleekLa~aEk~~~eLrE----------~akrEaqehS~d 206 (755)
+-+.-.=|+.+=.|+|..+ -++-+.+..+ .-|..+|.+||--++--..--|. +-.-|....-+.
T Consensus 415 rar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqar 494 (1118)
T KOG1029|consen 415 RARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQAR 494 (1118)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 004412 207 IRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQK 273 (755)
Q Consensus 207 l~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~K 273 (755)
|.--.+..+-|+--...|+++|..--..+--..+.+..+-.+.....++.+.|-+-+.-+-||.+.|
T Consensus 495 ikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk 561 (1118)
T KOG1029|consen 495 IKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESK 561 (1118)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 125
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=38.12 E-value=5.2e+02 Score=27.47 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-----------chhhHHHHHHHHHHHHHHHh
Q 004412 122 RKQLRQQIGALINELRILDKK-----------KDESISELNEKLKDMELLVR 162 (755)
Q Consensus 122 rKrLr~qI~al~~E~~~le~~-----------k~~~i~EL~~kLkE~E~l~~ 162 (755)
++|||.+ |..|+..|+++ ....+..|.+.|.|+|.-+.
T Consensus 26 E~rLR~~---lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErIL 74 (205)
T PF12240_consen 26 ERRLRTR---LERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERIL 74 (205)
T ss_pred HHHHHHH---HHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3566665 56788888863 23468889999999998885
No 126
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=38.06 E-value=65 Score=35.26 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhcCC--C-----CCCCc---CCccchhhHHHHHHHHHHHhhhhhhhhhcHHHHHHHHHH
Q 004412 620 LKRLKQQLLMLERFTGK--S-----GEDTE---SNDDGIKGLLSLISLLNKQVGRYQSLQGKIDDICKRLHE 681 (755)
Q Consensus 620 ikrLkqqll~lErl~g~--~-----~e~~~---~~~~~~r~~~~~~sll~Kqv~RYQsL~~KiDdLC~Rm~~ 681 (755)
||||+.=---||.+++. + +.... ..+..+.+..-+-.||+..|+.|-.++.+||+...-+..
T Consensus 5 lkRLEaatsRLE~i~~~~~~~~~~~~~~~~~~~~~~~~p~sV~afD~~i~~~l~~f~~~S~~igg~V~~~a~ 76 (312)
T PF01213_consen 5 LKRLEAATSRLEDIASSLQSSHRPSGTPSAPSAAVASVPPSVEAFDELINGPLKPFVELSKKIGGDVAEQAQ 76 (312)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 79999999999999854 1 10000 111255667777788999999999999999998887765
No 127
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=37.67 E-value=1.1e+03 Score=31.10 Aligned_cols=19 Identities=32% Similarity=0.118 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhhhhhhh
Q 004412 650 GLLSLISLLNKQVGRYQSL 668 (755)
Q Consensus 650 ~~~~~~sll~Kqv~RYQsL 668 (755)
.++-+-++|+|..-+||..
T Consensus 1025 ~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1025 ELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 3666777888888888833
No 128
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=37.36 E-value=4.8e+02 Score=26.87 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 004412 228 LGRAHRQVE 236 (755)
Q Consensus 228 L~rA~~~l~ 236 (755)
+..|..++.
T Consensus 151 l~~Ae~~I~ 159 (204)
T PRK09174 151 LKEAEARIA 159 (204)
T ss_pred HHHHHHHHH
Confidence 333333333
No 129
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=36.72 E-value=9.9e+02 Score=30.35 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=28.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHH
Q 004412 113 AQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLV 161 (755)
Q Consensus 113 sheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~ 161 (755)
-.+.-|..-=+.+-.+|+-|++-|..-+--.+..-++.....+-.|.++
T Consensus 861 e~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~ 909 (1259)
T KOG0163|consen 861 EGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLV 909 (1259)
T ss_pred cchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Confidence 3556677777888888888887776433222333334444444444444
No 130
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=36.09 E-value=12 Score=43.98 Aligned_cols=55 Identities=24% Similarity=0.203 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHHHHhhh
Q 004412 435 LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQFISQLK 489 (755)
Q Consensus 435 llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql~~~~~ 489 (755)
.-.|+.|..++...+..++..+..+...+.+||.-+..=-.|...|+.+|.++..
T Consensus 373 ~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 373 IQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456777788888888888888888888889998888888889999999888764
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=35.90 E-value=4.5e+02 Score=26.12 Aligned_cols=68 Identities=24% Similarity=0.314 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 121 ERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (755)
Q Consensus 121 ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (755)
+.-.|.++|..|..|+...+..+...+.+.+-+-++.+.|- ..++.-....+.|+.-|..+-.-=..|
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~----~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLE----EELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457788888888888888888888888888777777766 356666666667776666655444333
No 132
>PRK10869 recombination and repair protein; Provisional
Probab=35.81 E-value=7.8e+02 Score=28.83 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 119 FSERKQLRQQIGALINELRILDK---KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (755)
Q Consensus 119 ~~ErKrLr~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (755)
..+-+.+-++...+.+++..++. ...+.+.-|+-+++|.+.+.- +.-|++ .-.+-..+|..++++.+-+
T Consensus 156 ~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l---~~gE~e--eL~~e~~~L~n~e~i~~~~ 227 (553)
T PRK10869 156 LQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAP---QPGEFE--QIDEEYKRLANSGQLLTTS 227 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC---CCCcHH--HHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444433 345677778888888887774 222222 2223334555666655444
No 133
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=35.71 E-value=12 Score=43.90 Aligned_cols=71 Identities=24% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004412 119 FSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIA 189 (755)
Q Consensus 119 ~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~ 189 (755)
.+|...++.+|..|..|+..+...++.+..+++.++.+.+.-+....+.+.+-..+.+.+..+-..+++..
T Consensus 60 ~~e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el 130 (722)
T PF05557_consen 60 RAELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEEL 130 (722)
T ss_dssp -----------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888899999999888887777777777777766666554444444444444344444433333333
No 134
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=34.59 E-value=5.2e+02 Score=26.48 Aligned_cols=13 Identities=15% Similarity=0.449 Sum_probs=7.1
Q ss_pred hHHHHHHHHhhhc
Q 004412 23 FGVSCAFFALRML 35 (755)
Q Consensus 23 fGVs~Af~AL~~L 35 (755)
+-|+|.|+-+..+
T Consensus 12 ~~~~~~~~~~~~~ 24 (205)
T PRK06231 12 LLLSFSFLIISLF 24 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666644444
No 135
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=34.31 E-value=5.4e+02 Score=26.52 Aligned_cols=163 Identities=26% Similarity=0.386 Sum_probs=76.6
Q ss_pred hhHHhHHHHHHHHHHHHHH--hhhhhhh-----hhhhHHHhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHhhhhchhh
Q 004412 77 CKLSQKLDAAEREIEELKK--LRHEDAK-----ANEKVVGIFAAQEQS---WFSERKQLRQQIGALINELRILDKKKDES 146 (755)
Q Consensus 77 ~~L~~kL~~AE~ei~eLKk--rR~EDAK-----ANeKVv~IfAsheqs---W~~ErKrLr~qI~al~~E~~~le~~k~~~ 146 (755)
..+..++.....|.+=||. .|++.|= .+...-.|.++|..- |+..=++...++..+...+.. ++..
T Consensus 22 ~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~----~~~e 97 (194)
T PF15619_consen 22 AELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD----KDEE 97 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3445566666666555554 3444332 233455555655542 222222222222222222222 4556
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHH
Q 004412 147 ISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEA 226 (755)
Q Consensus 147 i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEa 226 (755)
+-.++..++-+..|+.. +-+.+ +.+|..+|..++....+ ..+..++ |.++ .-++-.+-++|+
T Consensus 98 l~k~~~~l~~L~~L~~d--knL~e----ReeL~~kL~~~~~~l~~----~~~ki~~----Lek~--leL~~k~~~rql-- 159 (194)
T PF15619_consen 98 LLKTKDELKHLKKLSED--KNLAE----REELQRKLSQLEQKLQE----KEKKIQE----LEKQ--LELENKSFRRQL-- 159 (194)
T ss_pred HHHHHHHHHHHHHHHHc--CCchh----HHHHHHHHHHHHHHHHH----HHHHHHH----HHHH--HHHHhhHHHHHH--
Confidence 66667777777776653 33322 34555555555544421 1222222 2221 112222223222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHH
Q 004412 227 ELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKIL 277 (755)
Q Consensus 227 eL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkil 277 (755)
..-.+-...+..++. .|-+||..|++-+..||+.|
T Consensus 160 --~~e~kK~~~~~~~~~--------------~l~~ei~~L~~klkEKer~L 194 (194)
T PF15619_consen 160 --ASEKKKHKEAQEEVK--------------SLQEEIQRLNQKLKEKEREL 194 (194)
T ss_pred --HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhcC
Confidence 222233333444444 78889999999999888753
No 136
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.93 E-value=4.9e+02 Score=27.05 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 125 LRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (755)
Q Consensus 125 Lr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (755)
++.++..+.+|+..++++-...-.+.+....+++.-+...+..+.+-+.+-.+|.+.|..+..-.+.|
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333322222333333333333333333444444455555666665555555444
No 137
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=33.92 E-value=7e+02 Score=27.75 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhch
Q 004412 81 QKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKD 144 (755)
Q Consensus 81 ~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~ 144 (755)
-|.......+.+++..|. .+...=.+|...|..|+.+..-+.+.+.+++.+++
T Consensus 13 ~K~~~lk~~~~e~~ekR~-----------El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rd 65 (294)
T COG1340 13 LKRKQLKEEIEELKEKRD-----------ELRKEASELAEKRDELNAKVRELREKAQELREERD 65 (294)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666662 23333456777788888888877777777665443
No 138
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=33.88 E-value=82 Score=27.27 Aligned_cols=46 Identities=30% Similarity=0.393 Sum_probs=38.6
Q ss_pred HHHHHHHHHh--hhhhhhhhcHHHHHHHHHHhhhHHHHHHHhhhccch
Q 004412 653 SLISLLNKQV--GRYQSLQGKIDDICKRLHETGQKLMEVQSKIASGFV 698 (755)
Q Consensus 653 ~~~sll~Kqv--~RYQsL~~KiDdLC~Rm~~TgQKlme~qs~i~~~~~ 698 (755)
.+-.|+..|| |||+|-++=|.++-+.+.+--.++-+++..|..|..
T Consensus 9 ~~~~~i~~~V~sG~Y~s~SEVir~aLR~le~~e~~~~~Lr~~i~~g~~ 56 (69)
T TIGR02606 9 HLESFIRSQVQSGRYGSASEVVRAALRLLEERETKLQALRDAIEEGEQ 56 (69)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778887 799999999999999998766788889999877776
No 139
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.68 E-value=3.3e+02 Score=33.01 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHHH
Q 004412 125 LRQQIGALINELRILDK---KKDESISELNEKLKDMELLV 161 (755)
Q Consensus 125 Lr~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l~ 161 (755)
.+..|....+++..++. +-+.++++|+..+.+++.-+
T Consensus 413 e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~ei 452 (652)
T COG2433 413 ERREITVYEKRIKKLEETVERLEEENSELKRELEELKREI 452 (652)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666554 23445666666666555333
No 140
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=32.22 E-value=8.4e+02 Score=28.13 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=36.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHhhHHH-HHHHHhh-----HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 004412 176 KELEEKISIAE-KIAEELRENAKQEAQEHSNEIRKHKTA-FIELVSN-----QRQLEAELGRAHRQVEARKEELDLVLEQ 248 (755)
Q Consensus 176 keleekLa~aE-k~~~eLrE~akrEaqehS~dl~Khk~a-~lEl~s~-----QrqlEaeL~rA~~~l~a~~~EL~sv~e~ 248 (755)
.+++......+ ...++|+..+++..+.|+..|...... -+|+... +..++.|-+.=+.+|+.....|..+-.+
T Consensus 314 ~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~ 393 (582)
T PF09731_consen 314 EEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEA 393 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333 335566666666666666555433221 1343222 3334555555556666666666655544
Q ss_pred h
Q 004412 249 K 249 (755)
Q Consensus 249 k 249 (755)
-
T Consensus 394 ~ 394 (582)
T PF09731_consen 394 L 394 (582)
T ss_pred H
Confidence 3
No 141
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.05 E-value=9.1e+02 Score=28.51 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=41.0
Q ss_pred hHHhHHHHHHHHHHHHHHhhh-----------hhhhhhhh---HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 004412 78 KLSQKLDAAEREIEELKKLRH-----------EDAKANEK---VVGIFAAQEQSWFSERKQLRQQIGALINELRILDKK 142 (755)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~-----------EDAKANeK---Vv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~ 142 (755)
.+..++..++.++.++..... +-..++.+ +..-|.+..-.|..+|..|..+|..+..++...+..
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~ 284 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQ 284 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555565555555433222 22223333 334566777789999999999999988888877753
No 142
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.60 E-value=9.8e+02 Score=28.74 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=40.1
Q ss_pred HHHHHHHHhhHHHHhhHHHHH-HHHhhHHH---HHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 004412 195 NAKQEAQEHSNEIRKHKTAFI-ELVSNQRQ---LEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDL 270 (755)
Q Consensus 195 ~akrEaqehS~dl~Khk~a~l-El~s~Qrq---lEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~ 270 (755)
....-+.+......+||..++ |++..+.. -+-+..+=+..+...+.+++.+.+-.-....+..+|..|+.+|-|+.
T Consensus 405 ~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~ 484 (594)
T PF05667_consen 405 ASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV 484 (594)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 334445554444458888876 44444322 22223233344444455555555544455555667777777777764
No 143
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=31.43 E-value=5.2e+02 Score=25.50 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 178 LEEKISIAEKIAEELRENAKQEAQE 202 (755)
Q Consensus 178 leekLa~aEk~~~eLrE~akrEaqe 202 (755)
...-++.|..-++++.+.++.+++.
T Consensus 19 a~~il~~A~~~a~~i~~~a~~~a~~ 43 (198)
T PRK03963 19 IEYILEEAQKEAEKIKEEARKRAES 43 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666655555554
No 144
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.23 E-value=5.9e+02 Score=32.01 Aligned_cols=82 Identities=23% Similarity=0.240 Sum_probs=48.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHH
Q 004412 143 KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQR 222 (755)
Q Consensus 143 k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~Qr 222 (755)
++..+.-|++..+-++.....-+..+--.+..+..+++++.+..++- +--=|-|-+.|+||
T Consensus 614 N~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~-------------------~~~fa~ID~~Sa~r 674 (1104)
T COG4913 614 NDAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQ-------------------ALNFASIDLPSAQR 674 (1104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------------hcchhhcchhhHHH
Confidence 44456666666666665554444666666778888888877655543 22234578888888
Q ss_pred HHH------HHHHHHHHHHHHhHHHHH
Q 004412 223 QLE------AELGRAHRQVEARKEELD 243 (755)
Q Consensus 223 qlE------aeL~rA~~~l~a~~~EL~ 243 (755)
|++ .+|.-+-..+..++..|+
T Consensus 675 qIael~~~lE~L~~t~~~~~~~~~~l~ 701 (1104)
T COG4913 675 QIAELQARLERLTHTQSDIAIAKAALD 701 (1104)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Confidence 875 334444444444444444
No 145
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=31.21 E-value=9.4e+02 Score=28.40 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=39.8
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004412 79 LSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDK 141 (755)
Q Consensus 79 L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~ 141 (755)
+.+.+...+.++.++..++.+=-..-...-|.++..++.+..+.+.+..+.....+.++.+-.
T Consensus 228 l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~ 290 (650)
T TIGR03185 228 LAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAA 290 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444443332222222245788888899999999999999988888887663
No 146
>PRK00106 hypothetical protein; Provisional
Probab=31.10 E-value=9.7e+02 Score=28.51 Aligned_cols=7 Identities=14% Similarity=-0.050 Sum_probs=2.8
Q ss_pred ccCcchh
Q 004412 351 RSSATVE 357 (755)
Q Consensus 351 ~~~~t~i 357 (755)
+.||..|
T Consensus 293 rIhp~rI 299 (535)
T PRK00106 293 RIHPARI 299 (535)
T ss_pred CcCHHHH
Confidence 3444433
No 147
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.88 E-value=4.7e+02 Score=27.06 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 116 QSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (755)
Q Consensus 116 qsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (755)
+.|..|+..|.++|..+.+|+..++..+...-+.+..+-+++..|- ..+++...-+.++..=+..+-..-++.
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~----~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE----QQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 148
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=30.78 E-value=1.1e+03 Score=29.22 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=25.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004412 113 AQEQSWFSERKQLRQQIGALINELRILDK 141 (755)
Q Consensus 113 sheqsW~~ErKrLr~qI~al~~E~~~le~ 141 (755)
.|-|.|-.||..|..-+..|.+|-..|..
T Consensus 235 ~~~~~we~Er~~L~~tVq~L~edR~~L~~ 263 (739)
T PF07111_consen 235 VHSQAWEPEREELLETVQHLQEDRDALQA 263 (739)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999887775
No 149
>smart00721 BAR BAR domain.
Probab=30.77 E-value=1.9e+02 Score=28.32 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHhhcCCCCCCCcCCccchhhHHHHHHHHHHHhhhhhhhhhcHHHHHHHHHH------hhhHHHH
Q 004412 615 GVSYKLKRLKQQLLMLERFTGKSGEDTESNDDGIKGLLSLISLLNKQVGRYQSLQGKIDDICKRLHE------TGQKLME 688 (755)
Q Consensus 615 gVSyKikrLkqqll~lErl~g~~~e~~~~~~~~~r~~~~~~sll~Kqv~RYQsL~~KiDdLC~Rm~~------TgQKlme 688 (755)
|++-+|.|..|.+.. ++ |.+. ...+-.-+....++++.+...+..|++.+.. .+.....
T Consensus 1 ~~~K~~~R~~q~~~e--k~-G~~e------------~T~~D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~ 65 (239)
T smart00721 1 GFKKQFNRAKQKVGE--KV-GKAE------------KTKLDEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLA 65 (239)
T ss_pred CccchhHHHHHHHHH--Hh-CCCC------------cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHH
Q ss_pred HHHhhhccchhcccc----cccccccchhhhHHHHHHhHHHH
Q 004412 689 VQSKIASGFVEFTEE----LDKFACFDKKRFADSLTTLFQEV 726 (755)
Q Consensus 689 ~qs~i~~~~~~~~~~----~~~~~~~d~~R~~d~i~~lf~ev 726 (755)
.+..++.++..+.++ .+-+........++.+...+.++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 107 (239)
T smart00721 66 SQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKL 107 (239)
T ss_pred HHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHHHH
No 150
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=30.64 E-value=5.6e+02 Score=25.62 Aligned_cols=8 Identities=13% Similarity=-0.006 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 004412 224 LEAELGRA 231 (755)
Q Consensus 224 lEaeL~rA 231 (755)
++.+-..|
T Consensus 136 I~~~k~~a 143 (181)
T PRK13454 136 IAEIRAGA 143 (181)
T ss_pred HHHHHHHH
Confidence 33333333
No 151
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=30.54 E-value=9.3e+02 Score=28.14 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=56.1
Q ss_pred HHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHh---hhhhHHHHHHHHHHHHHHhhhhhh
Q 004412 205 NEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQ---KEESVSFAQKLSLEIVKMRKDLDQ 272 (755)
Q Consensus 205 ~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~---kee~~~~~qkLs~El~klRkd~e~ 272 (755)
..|.|...|.-.|..++..++..|..+..+......|++.|... .++-...++.+..++..+.++...
T Consensus 296 d~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~ 366 (569)
T PRK04778 296 DILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDE 366 (569)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34468888888999999999999999999999999999988877 344566777888888887777664
No 152
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=30.40 E-value=5.7e+02 Score=25.62 Aligned_cols=18 Identities=6% Similarity=0.180 Sum_probs=10.5
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 004412 218 VSNQRQLEAELGRAHRQV 235 (755)
Q Consensus 218 ~s~QrqlEaeL~rA~~~l 235 (755)
..+++..+.+-.+|+.++
T Consensus 103 ~~A~~~Ie~Ek~~Al~el 120 (154)
T PRK06568 103 SDAIQLIQNQKSTASKEL 120 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666666666655
No 153
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=30.22 E-value=1.5e+02 Score=36.65 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 118 WFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRE 194 (755)
Q Consensus 118 W~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE 194 (755)
=..|+.||..+|..+.+|+. .++.+|.-..|+.-+....++.++.|..+++.+++..++...+|++
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~-----------~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLE-----------SYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777766666666544 4667777778887666677888888889999999998888877753
No 154
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.93 E-value=4.9e+02 Score=29.80 Aligned_cols=99 Identities=22% Similarity=0.221 Sum_probs=69.6
Q ss_pred chhhHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhh--
Q 004412 387 DGKRLEGWVRLEAEKYA---AVIEKRHHLELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRH-- 461 (755)
Q Consensus 387 ~~~~le~W~~~e~erya---~~Ie~rH~~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~-- 461 (755)
+.-..-+||.+..-|-- |.-.+=-..-| |-+-=|||=|--.|=-+=.--.|+.+||++-+.|...|.+.+.
T Consensus 47 ~~iss~gwff~i~~re~qlk~aa~~llq~ki----rk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf 122 (401)
T PF06785_consen 47 SIISSLGWFFAIGRREKQLKTAAGQLLQTKI----RKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVF 122 (401)
T ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33447899998543211 11111111222 3333478888888877777778999999999999998887765
Q ss_pred -----hchhhHHHHHhhHHHHHHHHHHHHHhhh
Q 004412 462 -----DNMKLEALLFEREEELHSLKEQFISQLK 489 (755)
Q Consensus 462 -----~~~~lEall~~Re~El~sLk~ql~~~~~ 489 (755)
+.-+||+++...++|+.-|.-||.+...
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~ 155 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQ 155 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5567999999999999999998877654
No 155
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=29.88 E-value=5.2e+02 Score=25.03 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004412 174 KRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR-KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLE 247 (755)
Q Consensus 174 k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~-Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e 247 (755)
.+.++..+|+..+..-+..+ ||.+.+ +.+.. |.+.+..|.++..-....+.--+.+|+.+..
T Consensus 10 s~~el~n~La~Le~slE~~K---------~S~~eL~kqkd~---L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEK---------TSQGELAKQKDQ---LRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp ----HHHHHHHHHHHHHHHH---------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH---------hhHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777766664442 232222 34443 4555555555444444444444444444333
No 156
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=29.84 E-value=4.5e+02 Score=30.29 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=51.7
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHh-
Q 004412 230 RAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQA- 308 (755)
Q Consensus 230 rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~A- 308 (755)
..+.++++.+.+|...+..-... +-+|-+=+.-||+| +.-|+.+..+..-+.+.+++..+...=+.-
T Consensus 199 ~~R~~~~~~k~~L~~~sd~Ll~k---VdDLQD~VE~LRkD---------V~~RgvRp~~~qle~v~kdi~~a~~~L~~m~ 266 (424)
T PF03915_consen 199 SNRAYMESGKKKLSEESDRLLTK---VDDLQDLVEDLRKD---------VVQRGVRPSPKQLETVAKDISRASKELKKMK 266 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---------HHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---------HHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777776554443333 44666677778877 456888999999999999987765543332
Q ss_pred ---HHHHHHHHHhhhhh
Q 004412 309 ---ELETERWKAASQSR 322 (755)
Q Consensus 309 ---E~E~erWkrlaE~r 322 (755)
..+.+.||++||.=
T Consensus 267 ~~i~~~kp~WkKiWE~E 283 (424)
T PF03915_consen 267 EYIKTEKPIWKKIWESE 283 (424)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHH
Confidence 24679999999984
No 157
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=29.78 E-value=84 Score=32.96 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---hhchhhHHHHHHHH
Q 004412 120 SERKQLRQQIGALINELRILD---KKKDESISELNEKL 154 (755)
Q Consensus 120 ~ErKrLr~qI~al~~E~~~le---~~k~~~i~EL~~kL 154 (755)
.|..-|+++..-+.+||.-|+ +.|++|..||+++|
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678888888899988888 46999999998886
No 158
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.62 E-value=81 Score=34.03 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=43.1
Q ss_pred HHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHHHHhh
Q 004412 440 IESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQFISQL 488 (755)
Q Consensus 440 ~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql~~~~ 488 (755)
-|+.+|+++++.++.++..++-+|.+||-.+-.+..|.-.|++.|....
T Consensus 156 ~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 156 KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3667888999999999999999999999999999999999999887654
No 159
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=29.27 E-value=3.7e+02 Score=23.04 Aligned_cols=82 Identities=27% Similarity=0.341 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHHHHHHhhhhh-hhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHH
Q 004412 80 SQKLDAAEREIEELKKLRHED-AKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDME 158 (755)
Q Consensus 80 ~~kL~~AE~ei~eLKkrR~ED-AKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E 158 (755)
.+.+..++.+|..|...+.+= ...+....|+..+.=..|..-...|...|..+..++..++..-+..-..|..+-.+.+
T Consensus 11 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k 90 (123)
T PF02050_consen 11 QQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666555443 1112122477778888888888899999999888888888765555555555554444
Q ss_pred HHH
Q 004412 159 LLV 161 (755)
Q Consensus 159 ~l~ 161 (755)
.+-
T Consensus 91 ~~e 93 (123)
T PF02050_consen 91 KLE 93 (123)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 160
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.24 E-value=8e+02 Score=27.00 Aligned_cols=138 Identities=28% Similarity=0.404 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhHHHHHH---------HHHHHHhhccccchhhhHHhHHHHHHHHHHHHHHhhhh--hhhhhhhHHHhhhh
Q 004412 45 WSELHDKMLRGSAQLLG---------LLVWRVQRDGANGEKCKLSQKLDAAEREIEELKKLRHE--DAKANEKVVGIFAA 113 (755)
Q Consensus 45 ~~~~lq~MLkgs~~~Lg---------lLa~naq~e~~~g~~~~L~~kL~~AE~ei~eLKkrR~E--DAKANeKVv~IfAs 113 (755)
|-+-+-++|+|--+-|. .-.+..+-...++-...|..+......++.+|+..-.| +--.+
T Consensus 134 WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~--------- 204 (312)
T smart00787 134 WYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPT--------- 204 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHH---------
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 114 QEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELR 193 (755)
Q Consensus 114 heqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLr 193 (755)
|=++++..|..+..++.. +...+.+++.++.+...-+. +...+..++.+.++.++++..+-|
T Consensus 205 -------eL~~lk~~l~~~~~ei~~----~~~~l~e~~~~l~~l~~~I~-------~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 205 -------ELDRAKEKLKKLLQEIMI----KVKKLEELEEELQELESKIE-------DLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred -------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHhhHHHHh
Q 004412 194 ENAKQEAQEHSNEIRK 209 (755)
Q Consensus 194 E~akrEaqehS~dl~K 209 (755)
.--..|+-..=+.+..
T Consensus 267 ~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 267 GFTFKEIEKLKEQLKL 282 (312)
T ss_pred CCCHHHHHHHHHHHHH
No 161
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=28.95 E-value=91 Score=31.75 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh---hchhhHHHHHHHH
Q 004412 118 WFSERKQLRQQIGALINELRILDK---KKDESISELNEKL 154 (755)
Q Consensus 118 W~~ErKrLr~qI~al~~E~~~le~---~k~~~i~EL~~kL 154 (755)
=-.||..|+.++.-+.+||.-|+. .|+++..+|+++|
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346778888888888888888874 6888888888885
No 162
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.71 E-value=8.1e+02 Score=26.86 Aligned_cols=180 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhhhHHHhhhhhhhhhHHH-----HHHHHHHHHHHHHHHHHhhh-----hchhhHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 004412 103 ANEKVVGIFAAQEQSWFSE-----RKQLRQQIGALINELRILDK-----KKDESISELNEKLKDMELLVRSKDRVLEEDE 172 (755)
Q Consensus 103 ANeKVv~IfAsheqsW~~E-----rKrLr~qI~al~~E~~~le~-----~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~ 172 (755)
+| .++..|-...-.++.. ..-|..|+..+.+++...+. +...-+-.+...+.-...-+..-..++...+
T Consensus 150 ~n-~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~ 228 (444)
T TIGR03017 150 AN-AFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQ 228 (444)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHH---HHHHHHHHhhHHH-HhhHHHHH---HHHhhHHHHHHHHHHHHHH
Q 004412 173 QKRKELEEKISIAEK-----------IAEELRE---NAKQEAQEHSNEI-RKHKTAFI---ELVSNQRQLEAELGRAHRQ 234 (755)
Q Consensus 173 ~k~keleekLa~aEk-----------~~~eLrE---~akrEaqehS~dl-~Khk~a~l---El~s~QrqlEaeL~rA~~~ 234 (755)
.+..++..++...+. ...+|+. .+..++++.+... .+|-...- ++..-+.++..++.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~ 308 (444)
T TIGR03017 229 AQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSS 308 (444)
T ss_pred HHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH-------HhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 004412 235 VE-------ARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRK 283 (755)
Q Consensus 235 l~-------a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrk 283 (755)
+. +...+|..-++.......-......++..|.+|.+-...+...+|.|
T Consensus 309 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r 364 (444)
T TIGR03017 309 VGTNSRILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQR 364 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 163
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=28.58 E-value=1.9e+02 Score=26.34 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHhhhHHHHHHHhhhccchhcccccccccccchhhhHHHHHHhHHHHhhh
Q 004412 671 KIDDICKRLHETGQKLMEVQSKIASGFVEFTEELDKFACFDKKRFADSLTTLFQEVQRG 729 (755)
Q Consensus 671 KiDdLC~Rm~~TgQKlme~qs~i~~~~~~~~~~~~~~~~~d~~R~~d~i~~lf~evQRg 729 (755)
||-..|+.+.+.++++..-+..++.+|..++.........+..+.+..++..++++...
T Consensus 11 kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~ 69 (194)
T cd07307 11 KLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEF 69 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666677777777777666554443323445555555555444443
No 164
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=27.65 E-value=20 Score=42.17 Aligned_cols=103 Identities=27% Similarity=0.463 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhh----------chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 124 QLRQQIGALINELRILDKK----------KDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELR 193 (755)
Q Consensus 124 rLr~qI~al~~E~~~le~~----------k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLr 193 (755)
.|+.++..|..|+..++.. .+..+.+|+.+..+....+.. -.+..++ --.+.++-..+.+...++
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~-a~~LrDE---lD~lR~~a~r~~klE~~v- 317 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEARE-ARALRDE---LDELREKADRADKLENEV- 317 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh---HHHHHHHHHHHHHHHHHH-
Confidence 4566666666666655432 233444444444444333310 0111111 122333333333333333
Q ss_pred HHHHHHHHHhhHHHHhhHHHH----HHHHhhHHHHHHHHHHHH
Q 004412 194 ENAKQEAQEHSNEIRKHKTAF----IELVSNQRQLEAELGRAH 232 (755)
Q Consensus 194 E~akrEaqehS~dl~Khk~a~----lEl~s~QrqlEaeL~rA~ 232 (755)
++.|.-+.+ +.++++..... -.++.....||.+|.++.
T Consensus 318 e~YKkKLed-~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~ 359 (713)
T PF05622_consen 318 EKYKKKLED-LEDLKRQVKELEEDNAVLLETKAMLEEELKKAR 359 (713)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455555666 66666655544 245666778888887764
No 165
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.45 E-value=5.4e+02 Score=24.42 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 004412 176 KELEEKISIAEKIAEELRENAKQEAQEHSNEI 207 (755)
Q Consensus 176 keleekLa~aEk~~~eLrE~akrEaqehS~dl 207 (755)
..+...|...-.++.+....-.+|+..|+.++
T Consensus 27 ~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~ 58 (132)
T PF07926_consen 27 QSLREDLESQAKIAQEAQQKYERELVKHAEDI 58 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444444445444444556666666443
No 166
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=27.12 E-value=1.5e+03 Score=29.40 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=42.8
Q ss_pred HHHHhhhhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHH
Q 004412 406 IEKRHHLELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEAL 469 (755)
Q Consensus 406 Ie~rH~~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEal 469 (755)
.-+.|..||+.--.++|..-|++.-.|--+=-.-..++-+..+-..|++.+....+...++|.+
T Consensus 637 ~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~ 700 (1072)
T KOG0979|consen 637 EIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENL 700 (1072)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3356778888888889998888887775544444444555555555666666666666677765
No 167
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=26.61 E-value=4.2e+02 Score=25.12 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcCCccchhhHHHHHHHHHHHhhhhhhhhhcHHHHHHHHHHhhhHHHHHHH------
Q 004412 618 YKLKRLKQQLLMLERFTGKSGEDTESNDDGIKGLLSLISLLNKQVGRYQSLQGKIDDICKRLHETGQKLMEVQS------ 691 (755)
Q Consensus 618 yKikrLkqqll~lErl~g~~~e~~~~~~~~~r~~~~~~sll~Kqv~RYQsL~~KiDdLC~Rm~~TgQKlme~qs------ 691 (755)
-||.|..|.+. +++ |.+..+. +-.-..-+.++++.|+..-.+|-.=|++.-.+..++..-+.
T Consensus 3 K~~~R~~q~~~--~k~-g~~~~t~---------~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (229)
T PF03114_consen 3 KKINRAKQRVK--QKL-GKSEKTE---------IDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPF 70 (229)
T ss_dssp HHHHHHHHHHH--HHH-TSHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHH
T ss_pred hHHHHHHHHHH--HHc-CCCCCCc---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHH
Confidence 57888888764 566 6643110 11222333344444444333444444444456777777777
Q ss_pred -hhhccchhcccccccccc
Q 004412 692 -KIASGFVEFTEELDKFAC 709 (755)
Q Consensus 692 -~i~~~~~~~~~~~~~~~~ 709 (755)
.++..+..++.+.++..+
T Consensus 71 ~~l~~~l~~~~~~~~~~~~ 89 (229)
T PF03114_consen 71 EELADALIELGSEFSDDSS 89 (229)
T ss_dssp HHHHHHHHHHHHCTSTTCH
T ss_pred HHHHHHHHHHhccccccch
Confidence 777777776665544433
No 168
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=26.48 E-value=4.1e+02 Score=23.73 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCh
Q 004412 226 AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDT 288 (755)
Q Consensus 226 aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~ 288 (755)
..|.++...+...-.--...++.-++++...+++.+|...+.--+..=.++|+.+-|+...|+
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~ 70 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDR 70 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444333333333334444567777778888888888878888888888888777664
No 169
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=26.45 E-value=1.4e+03 Score=29.06 Aligned_cols=31 Identities=45% Similarity=0.626 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAK 197 (755)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~ak 197 (755)
.++|+-.+.++++++||...+|--+-+ |+|+
T Consensus 670 ~q~eel~Ke~kElq~rL~~q~KkiDh~-ERA~ 700 (988)
T KOG2072|consen 670 RQIEELEKERKELQSRLQYQEKKIDHL-ERAK 700 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHH
Confidence 788888999999999999999988777 6664
No 170
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=26.34 E-value=2.2e+02 Score=30.27 Aligned_cols=74 Identities=31% Similarity=0.379 Sum_probs=49.1
Q ss_pred HHHHHHHhhhhhhhhhcHHHHHHHHHHhhhHHHHHHHhhhccchhcc------cccccccccchhhhH--HHHHHhHHHH
Q 004412 655 ISLLNKQVGRYQSLQGKIDDICKRLHETGQKLMEVQSKIASGFVEFT------EELDKFACFDKKRFA--DSLTTLFQEV 726 (755)
Q Consensus 655 ~sll~Kqv~RYQsL~~KiDdLC~Rm~~TgQKlme~qs~i~~~~~~~~------~~~~~~~~~d~~R~~--d~i~~lf~ev 726 (755)
+.-|+|||.--|.|-.|--.| +..|||.+|+||-+=.++-+.-. ...++.+.||+.=|+ +-|--|..|+
T Consensus 6 le~Lk~qV~~L~~lV~KQs~l---IskTGq~vlelQv~~~K~~~~~~~~~~~~~~~~~~~~~d~~D~aTNeDLVQLV~EL 82 (216)
T PF07957_consen 6 LEELKKQVDELQALVKKQSKL---ISKTGQQVLELQVKKQKRDVNSFDKSFWPKSSSKQAQIDMSDYATNEDLVQLVGEL 82 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcccccccccccCcCCCccccccccchhHHHHHHHH
Confidence 345677776655555554333 45699999999977555444322 234667889998887 4577788888
Q ss_pred hhhhh
Q 004412 727 QRGLE 731 (755)
Q Consensus 727 QRgLE 731 (755)
|--|-
T Consensus 83 QgQLd 87 (216)
T PF07957_consen 83 QGQLD 87 (216)
T ss_pred HHHHH
Confidence 86553
No 171
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=26.20 E-value=57 Score=23.87 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.1
Q ss_pred HHHHHhhhhhhhhhhhHHhh
Q 004412 441 ESKRLQSHVEGLNHETSQLR 460 (755)
Q Consensus 441 E~~rLrS~~e~L~~~lsq~~ 460 (755)
|+.++|++|.+|++.|+.-+
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999988654
No 172
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=25.55 E-value=1.2e+02 Score=28.36 Aligned_cols=74 Identities=27% Similarity=0.377 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 004412 167 VLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (755)
Q Consensus 167 a~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (755)
++.++...|..++.....++.-.++|-..+=.||-+-.++=++.+.++ .....+|+.+|.-+...+++-..+|.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~---e~k~~~le~~l~e~~~~l~~lq~qL~ 75 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAAL---EEKNEQLEKQLKEKEALLESLQAQLK 75 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCTTHHCHCCCHCTSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888998888887777777777666666655444 23334566666666655555555554
No 173
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=25.38 E-value=1.9e+03 Score=30.14 Aligned_cols=307 Identities=21% Similarity=0.229 Sum_probs=167.9
Q ss_pred HHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh--------------hhchhhHHHHHHHHHHH
Q 004412 92 ELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILD--------------KKKDESISELNEKLKDM 157 (755)
Q Consensus 92 eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le--------------~~k~~~i~EL~~kLkE~ 157 (755)
+|++.++-+.-.-+++.++-+.. -+......+|-++-.++..++.-|. ..+...+.+|..+|..+
T Consensus 151 ql~ss~~~~~e~e~r~~e~~s~~-vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~ 229 (1822)
T KOG4674|consen 151 QLKSSTKTLSELEARLQETQSED-VSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDL 229 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34455555555555666654443 3467777777777777776665555 34556789999998887
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHH---HHHHH
Q 004412 158 ELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELG---RAHRQ 234 (755)
Q Consensus 158 E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~---rA~~~ 234 (755)
..=...-.....--.++..+|+.++-..-..+..+++++.-.-.+..+++.-|+.-+=...+.=-+++++++ +|...
T Consensus 230 ~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~ 309 (1822)
T KOG4674|consen 230 KESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEE 309 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654432223333336667888888888888888888877655555555555444444333333333332222 22221
Q ss_pred -------HHHhHHHH-HHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHH
Q 004412 235 -------VEARKEEL-DLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRR 306 (755)
Q Consensus 235 -------l~a~~~EL-~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK 306 (755)
+.....|. |.+.+.+.-...+..++-.+|..|...+++.-.-+++-+.
T Consensus 310 ~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~------------------------ 365 (1822)
T KOG4674|consen 310 LEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGE------------------------ 365 (1822)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcc------------------------
Confidence 12222222 3333333333333333333444444444333333333111
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhhhh--hhhhhccCcccccccccCcchhhhhhhhccCCCCCCcCccccCcccccc
Q 004412 307 QAELETERWKAASQSRHERHSLRSMFVSQ--ANSRLAASSGAKGKTRSSATVECEHIELKKDSDVFSPLSDYYSAEGNEE 384 (755)
Q Consensus 307 ~AE~E~erWkrlaE~rher~slrSm~~~~--~~~~l~~~s~~v~~~~~~~t~i~~~~~e~~e~~~~~p~~d~y~~~~~~~ 384 (755)
.||.... ..+. .+.+ .++.|++++
T Consensus 366 ----------------------~~~~s~~~a~~s~------~~~~-~~sLtk~ys------------------------- 391 (1822)
T KOG4674|consen 366 ----------------------SSMVSEKAALASS------LIRP-GSSLTKLYS------------------------- 391 (1822)
T ss_pred ----------------------cchhhhHHHHHHh------hccc-chhHHHHHH-------------------------
Confidence 1111110 0000 0110 133333321
Q ss_pred ccchhhHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhh
Q 004412 385 QADGKRLEGW---VRLEAEKYAAVIEKRHHLELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRH 461 (755)
Q Consensus 385 p~~~~~le~W---~~~e~erya~~Ie~rH~~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~ 461 (755)
.|..++.= |..+-+||+. .+..|-+..-.+-==|.-=|..+-.|=.+..-+-.+++.+++++..+..
T Consensus 392 --~~~~~qqqle~~~lele~~~~--------~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~ 461 (1822)
T KOG4674|consen 392 --KYSKLQQQLESLKLELERLQN--------ILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEK 461 (1822)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123332 2223344443 3456666666666666667777888888888888888899999999999
Q ss_pred hchhhHHHHHhhHHHHHHHHHHHHHh
Q 004412 462 DNMKLEALLFEREEELHSLKEQFISQ 487 (755)
Q Consensus 462 ~~~~lEall~~Re~El~sLk~ql~~~ 487 (755)
+-+.|.+.+..+..|++.|.-+....
T Consensus 462 ~~~~l~~~~~~~~renk~l~~~~sdl 487 (1822)
T KOG4674|consen 462 ELESLKKQLNDLERENKLLEQQISDL 487 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887764433
No 174
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.09 E-value=6.4e+02 Score=24.46 Aligned_cols=87 Identities=28% Similarity=0.399 Sum_probs=59.6
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHH
Q 004412 77 CKLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKD 156 (755)
Q Consensus 77 ~~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE 156 (755)
..+..+|...+..|+..|-.+.+ |..+|..|+.....|..+..+ ...++.+|+.++.|
T Consensus 12 ~el~n~La~Le~slE~~K~S~~e------------------L~kqkd~L~~~l~~L~~q~~s----~~qr~~eLqaki~e 69 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGE------------------LAKQKDQLRNALQSLQAQNAS----RNQRIAELQAKIDE 69 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHH------------------HHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 46778899999998887766554 566777777777666666655 45678888888887
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 157 MELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (755)
Q Consensus 157 ~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (755)
... .++.++.-.-+++.+|.++++.-.-|
T Consensus 70 a~~-------~le~eK~ak~~l~~r~~k~~~dka~l 98 (107)
T PF09304_consen 70 ARR-------NLEDEKQAKLELESRLLKAQKDKAIL 98 (107)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 543 33443333448889998888765444
No 175
>PRK12705 hypothetical protein; Provisional
Probab=24.91 E-value=1.2e+03 Score=27.59 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 004412 616 VSYKLKRLKQQLLMLERFT 634 (755)
Q Consensus 616 VSyKikrLkqqll~lErl~ 634 (755)
...-+++|++ ||.++
T Consensus 426 ~e~yv~rL~~----le~i~ 440 (508)
T PRK12705 426 LDEYVQRLEE----LEQIA 440 (508)
T ss_pred HHHHHHHHHH----HHHHh
Confidence 3466888887 78883
No 176
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=24.87 E-value=6.9e+02 Score=24.75 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=3.2
Q ss_pred hhHHHHH
Q 004412 117 SWFSERK 123 (755)
Q Consensus 117 sW~~ErK 123 (755)
++..+|+
T Consensus 54 ~~L~~R~ 60 (184)
T PRK13455 54 GMLDKRA 60 (184)
T ss_pred HHHHHHH
Confidence 4444443
No 177
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=24.84 E-value=67 Score=31.28 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhhhhhhhcHHHHHHHHHH--hhhHHHHHHHhhh
Q 004412 654 LISLLNKQVGRYQSLQGKIDDICKRLHE--TGQKLMEVQSKIA 694 (755)
Q Consensus 654 ~~sll~Kqv~RYQsL~~KiDdLC~Rm~~--TgQKlme~qs~i~ 694 (755)
||+|..++-.||+-+ -+.+||..||+ ..-++..++.++-
T Consensus 1 lP~l~~~~p~~Y~~~--~L~~L~~~m~~~~~~~~~~~~~~~~~ 41 (136)
T PF03711_consen 1 LPELVAEYPARYQNM--GLRDLCQAMHEILKELNVKKLQKKAF 41 (136)
T ss_dssp SHHHHHHTCCCCTT---BHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CchHHHhCHHHHcCc--CHHHHHHHHHHHHHHcCHHHHHHHHh
Confidence 589999999999977 79999999998 3334555666553
No 178
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.80 E-value=79 Score=32.08 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 004412 223 QLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILS 278 (755)
Q Consensus 223 qlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilS 278 (755)
.+|..|+.|.+.-.=.+.||+ -||.--..+|+|-+|+--|++|+.-+|++-.
T Consensus 4 D~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl~V~ek~~~ 55 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQELIVQEKLRK 55 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467888888888887888885 4777788899999999999999977777643
No 179
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=24.66 E-value=1.2e+03 Score=27.66 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=33.6
Q ss_pred cccchhhHHHHHHHH--------HHHHHHHHHHHhhhhHHHHHHHhccchh
Q 004412 384 EQADGKRLEGWVRLE--------AEKYAAVIEKRHHLELEAFAEQMRMKDE 426 (755)
Q Consensus 384 ~p~~~~~le~W~~~e--------~erya~~Ie~rH~~EIeAF~eQmRlKDE 426 (755)
.+..|..|--|++.. ...|+..+.+=|..||..|.+.+|-.--
T Consensus 210 ~L~~ys~Li~~lK~~d~~~y~~L~~~Y~~~~~~ly~~e~~~~~~~~k~~~~ 260 (701)
T PF09763_consen 210 ELLPYSGLILWLKEVDPESYQALIKAYNSSMSKLYEREIRDFFEALKKSIS 260 (701)
T ss_pred HHHhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444677777888763 4589999999999999999999876544
No 180
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.53 E-value=1.2e+03 Score=27.34 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 004412 291 KQMLLKEVKISKAKRRQAELETERWKAA 318 (755)
Q Consensus 291 KemLlrEvk~~kAkrK~AE~E~erWkrl 318 (755)
...+-..+......-..|....+.|+..
T Consensus 399 q~ei~e~l~~Lrk~E~eAr~kL~~~~~~ 426 (569)
T PRK04778 399 QEKLSEMLQGLRKDELEAREKLERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555556777654
No 181
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=24.47 E-value=1.2e+03 Score=27.47 Aligned_cols=145 Identities=14% Similarity=0.264 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 116 QSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELREN 195 (755)
Q Consensus 116 qsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~ 195 (755)
+.|..+...+..++..+..+...++... .+|+..+. ..++..+++++..+..- ++
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~l~~~le-----------------~~~~~~~ek~~~l~~~~----~~ 110 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADL----REVTTRME-----------------AAQQHADDKIRQMINSE----QR 110 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-----------------HHHHHHHHHHHHHHHHH----HH
Confidence 5677777777777776666654443221 12222221 12223344555444443 33
Q ss_pred HHHHHHHhhHHHHhhHH-HHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HhhhhhHHHHHHHHHHH
Q 004412 196 AKQEAQEHSNEIRKHKT-AFIELVSNQRQLEAELGRAHRQVEARKEELDLVL-----------EQKEESVSFAQKLSLEI 263 (755)
Q Consensus 196 akrEaqehS~dl~Khk~-a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~-----------e~kee~~~~~qkLs~El 263 (755)
++.+-.+.++++-.++. .|. ..||..|+.-|.=-..+|+.-+..++.+- ++...-...-++++.|.
T Consensus 111 L~~~F~~LA~~ile~k~~~f~--~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea 188 (475)
T PRK10361 111 LSEQFENLANRIFEHSNRRVD--EQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEA 188 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555533332 232 33444455444433334433333333222 11122222334566666
Q ss_pred HHHhhhhh--hh------HHHHHHHHhhccCC
Q 004412 264 VKMRKDLD--QK------DKILSAMLRKSKSD 287 (755)
Q Consensus 264 ~klRkd~e--~K------DkilSaMLrkSklD 287 (755)
..|-+=+- .| +.+|..+|+.|.+.
T Consensus 189 ~nLt~ALkgd~K~rG~WGE~qLerILE~sGL~ 220 (475)
T PRK10361 189 INLTRALKGDNKTQGNWGEVVLTRVLEASGLR 220 (475)
T ss_pred HHHHHHHcCCCCcCcchHHHHHHHHHHHhCCC
Confidence 66666552 24 66777777777654
No 182
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=24.25 E-value=3.3e+02 Score=26.78 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=20.3
Q ss_pred HHHHhhh-hchhhHHHHHHHHHHHHHHHh
Q 004412 135 ELRILDK-KKDESISELNEKLKDMELLVR 162 (755)
Q Consensus 135 E~~~le~-~k~~~i~EL~~kLkE~E~l~~ 162 (755)
=+|+|++ .++-.+..|++-++-...++.
T Consensus 10 n~R~lra~~re~~~e~Lee~~ekl~~vv~ 38 (134)
T PRK10328 10 NIRTLRAMAREFSIDVLEEMLEKFRVVTK 38 (134)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3566665 467788888888887777776
No 183
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.12 E-value=1.3e+03 Score=27.74 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=44.7
Q ss_pred HHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 004412 198 QEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLD 271 (755)
Q Consensus 198 rEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e 271 (755)
+..-|...-++|.++-+-=+..-=|+|--+++...-.|+.+=+..|.++=+.-+++..+.+.--=|+.||-.-+
T Consensus 491 ~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~ 564 (594)
T PF05667_consen 491 RRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCS 564 (594)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 33444455556666655444444555667777777777777777777765555555555555555666665443
No 184
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.04 E-value=2.2e+02 Score=29.88 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=53.1
Q ss_pred hcHHHHHHHHHHhhhHHHHHHHhhhccchhcc---cccccccc---cchhhhHHHHHH-------hHHHHhhhhhHHHHH
Q 004412 670 GKIDDICKRLHETGQKLMEVQSKIASGFVEFT---EELDKFAC---FDKKRFADSLTT-------LFQEVQRGLEVRIAR 736 (755)
Q Consensus 670 ~KiDdLC~Rm~~TgQKlme~qs~i~~~~~~~~---~~~~~~~~---~d~~R~~d~i~~-------lf~evQRgLEvriaR 736 (755)
+|+=.+|++|-+.|..+..-+...+.++..++ =+++..+. =.+.+|...++. |+..+|+.|=-.|..
T Consensus 19 ~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~ 98 (215)
T cd07601 19 NQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQ 98 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556799999988888888888888877662 01112221 156778777764 677899999889998
Q ss_pred Hh-hccccc
Q 004412 737 II-GDLGGT 744 (755)
Q Consensus 737 II-GDLeGt 744 (755)
.+ +||.|+
T Consensus 99 F~k~Dl~~v 107 (215)
T cd07601 99 FMESDLAEI 107 (215)
T ss_pred HHHHHhHHH
Confidence 88 888764
No 185
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=23.95 E-value=1.5e+03 Score=28.43 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=15.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004412 110 IFAAQEQSWFSERKQLRQQIGALINELRILD 140 (755)
Q Consensus 110 IfAsheqsW~~ErKrLr~qI~al~~E~~~le 140 (755)
--|+|+|+=..-.--+++++.+|..+...|+
T Consensus 492 aaaarErrAsE~eas~r~R~~ALEara~ALe 522 (828)
T PF04094_consen 492 AAAARERRASEAEASLRAREEALEARAKALE 522 (828)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3345555544444445555555555555443
No 186
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.85 E-value=2.9e+02 Score=27.34 Aligned_cols=28 Identities=43% Similarity=0.661 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 004412 257 QKLSLEIVKMRKDLDQKDKILSAMLRKS 284 (755)
Q Consensus 257 qkLs~El~klRkd~e~KDkilSaMLrkS 284 (755)
.+++.|+..+.++++.+++-+.+|=+++
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677778888888887777777665544
No 187
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=23.70 E-value=1.5e+03 Score=28.26 Aligned_cols=97 Identities=25% Similarity=0.408 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h
Q 004412 128 QIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQE----H 203 (755)
Q Consensus 128 qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqe----h 203 (755)
+|.-|..|++.++-.--..-..|+.+-.|+|.|+. +-.--+-.-.+|..-|+.+|-+-..|-|-.++|+.+ |
T Consensus 74 E~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~----ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~H 149 (739)
T PF07111_consen 74 ELRRLEEEVRALRETSLQQKMRLEAQAEELEALAR----AEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLH 149 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344444444443222223334444456665552 111112224567777788887777775555666654 2
Q ss_pred hHHH----HhhHHHHHHHHhhHHHHHHHH
Q 004412 204 SNEI----RKHKTAFIELVSNQRQLEAEL 228 (755)
Q Consensus 204 S~dl----~Khk~a~lEl~s~QrqlEaeL 228 (755)
-..| ..|.++...|.+.=+.||..|
T Consensus 150 qeql~~Lt~aHq~~l~sL~~k~~~Le~~L 178 (739)
T PF07111_consen 150 QEQLSSLTQAHQEALASLTSKAEELEKSL 178 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 356677777777776666555
No 188
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=23.62 E-value=6.8e+02 Score=24.22 Aligned_cols=9 Identities=11% Similarity=0.132 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 004412 223 QLEAELGRA 231 (755)
Q Consensus 223 qlEaeL~rA 231 (755)
+.+..+..|
T Consensus 101 ea~~~~~~a 109 (164)
T PRK14471 101 EGDKMIEQA 109 (164)
T ss_pred HHHHHHHHH
Confidence 333333333
No 189
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=23.59 E-value=8.7e+02 Score=27.10 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HhhHHH-H--HHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 004412 174 KRKELEEKISIAEKIAEELRENAKQEAQEHSNEI------RKHKTA-F--IELVSNQRQLEAELGRAHRQVEARKEELD 243 (755)
Q Consensus 174 k~keleekLa~aEk~~~eLrE~akrEaqehS~dl------~Khk~a-~--lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (755)
|......||+.+..--++|..--.-|.++-..+| +-..+- | ..|.+.+++-|+|+..|....+..+-.|.
T Consensus 36 keq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E~~~~lLk 114 (291)
T KOG4466|consen 36 KEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYESKKKLLK 114 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666542122222222222 211111 1 46778899999999999888887777765
No 190
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.58 E-value=1.6e+02 Score=30.39 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHhhhHHHHHHHhhhccchhccccccccccc-----chhhhHHHHHH-------hHHHHhhhhhHHHHHHh
Q 004412 671 KIDDICKRLHETGQKLMEVQSKIASGFVEFTEELDKFACF-----DKKRFADSLTT-------LFQEVQRGLEVRIARII 738 (755)
Q Consensus 671 KiDdLC~Rm~~TgQKlme~qs~i~~~~~~~~~~~~~~~~~-----d~~R~~d~i~~-------lf~evQRgLEvriaRII 738 (755)
|+=..|++|-++|..+..-+...+.++..++++.+....+ .+.+|.+.++. |+..+|+.+=-.|...+
T Consensus 19 Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~pL~~F~ 98 (202)
T cd07606 19 KLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQVEHMLNDRLAQFA 98 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445788888888888888888888888887654444443 48889888875 46677777766666555
Q ss_pred -hcccc
Q 004412 739 -GDLGG 743 (755)
Q Consensus 739 -GDLeG 743 (755)
+||.+
T Consensus 99 k~Dl~~ 104 (202)
T cd07606 99 DTDLQE 104 (202)
T ss_pred HHHHHH
Confidence 44443
No 191
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.21 E-value=6.9e+02 Score=24.17 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHH
Q 004412 123 KQLRQQIGALINELRILDKKKDESISELNEKLKDMELL 160 (755)
Q Consensus 123 KrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l 160 (755)
+++--++..+..++..+.+.++..-.|+=+...+.+.+
T Consensus 26 r~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444444444444433
No 192
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=23.10 E-value=1.2e+03 Score=27.13 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=13.8
Q ss_pred HHHHhhHHHHH-HHHhhHHHHH
Q 004412 205 NEIRKHKTAFI-ELVSNQRQLE 225 (755)
Q Consensus 205 ~dl~Khk~a~l-El~s~QrqlE 225 (755)
+-|||+|.... ||...+||+|
T Consensus 352 aaLrkerd~L~keLeekkrele 373 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELE 373 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776 6666666655
No 193
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=23.07 E-value=4.6e+02 Score=22.24 Aligned_cols=62 Identities=27% Similarity=0.489 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 120 SERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (755)
Q Consensus 120 ~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (755)
.|..||..++.-+.+++ .-++.+|.--.|+.-.-...++.++.+..++...+..++..-..|
T Consensus 4 ~E~~rL~Kel~kl~~~i-----------~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEI-----------ERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555554444 446667777777775555667777777788888877776655444
No 194
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.94 E-value=1.5e+03 Score=27.92 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=65.9
Q ss_pred HHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHh
Q 004412 206 EIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDL---DQKDKILSAMLR 282 (755)
Q Consensus 206 dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~---e~KDkilSaMLr 282 (755)
.||-|.+-+-|...-+ ..+.+--+++.+...=.+.+..+-..+...++.|..+.++|+.+. +.|-+||.+.++
T Consensus 62 ~l~iN~e~l~ef~~i~----~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~ 137 (655)
T KOG3758|consen 62 LLKINEEFLKEFKEIK----RRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLD 137 (655)
T ss_pred HHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544443554444 445566677888888888888888899999999999999999874 679999999999
Q ss_pred hccCChHHHHHH
Q 004412 283 KSKSDTAEKQML 294 (755)
Q Consensus 283 kSklD~~EKemL 294 (755)
+-.+..+|-.-|
T Consensus 138 ~fqLs~~E~~~L 149 (655)
T KOG3758|consen 138 NFQLSSEELDLL 149 (655)
T ss_pred hcccChHHHHHH
Confidence 999999887543
No 195
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=22.91 E-value=1.4e+03 Score=27.56 Aligned_cols=46 Identities=35% Similarity=0.439 Sum_probs=27.4
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004412 78 KLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDK 141 (755)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~ 141 (755)
.|..+|.....+..+|.+ +|. ....+-..|+.+|..+..++...+.
T Consensus 140 ~lQ~qlE~~qkE~eeL~~-------~~~-----------~Le~e~~~l~~~v~~l~~eL~~~~e 185 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLK-------ENE-----------QLEEEVEQLREEVERLEAELEQEEE 185 (546)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666553 332 2334447788888888877777554
No 196
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.74 E-value=1.7e+03 Score=28.50 Aligned_cols=20 Identities=30% Similarity=0.205 Sum_probs=11.8
Q ss_pred hhhhHHhHHHHHHHHHHHHH
Q 004412 75 EKCKLSQKLDAAEREIEELK 94 (755)
Q Consensus 75 ~~~~L~~kL~~AE~ei~eLK 94 (755)
....+.|+..+...|.++|.
T Consensus 672 ~~e~lkQ~~~~l~~e~eeL~ 691 (970)
T KOG0946|consen 672 QIENLKQMEKELQVENEELE 691 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666653
No 197
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=22.60 E-value=7.5e+02 Score=24.40 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 004412 257 QKLSLEIVKMRKDLDQKDKILSAMLRKS 284 (755)
Q Consensus 257 qkLs~El~klRkd~e~KDkilSaMLrkS 284 (755)
..+...|..+..+ +-+ .+|..|+..+
T Consensus 88 ~~a~~~l~~~~~~-~Y~-~~l~~li~~a 113 (198)
T PRK03963 88 EAVRERLAELPED-EYF-ETLKALTKEA 113 (198)
T ss_pred HHHHHHHHhhhhh-hHH-HHHHHHHHHH
Confidence 3444555666666 333 4666665554
No 198
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=22.59 E-value=29 Score=40.96 Aligned_cols=53 Identities=25% Similarity=0.397 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHhhhhhhhhhhhHHh-hhhchhhHHHHHhhHHHHHHHHHHHHH
Q 004412 434 RLLSMEIESKRLQSHVEGLNHETSQL-RHDNMKLEALLFEREEELHSLKEQFIS 486 (755)
Q Consensus 434 rllsmE~E~~rLrS~~e~L~~~lsq~-~~~~~~lEall~~Re~El~sLk~ql~~ 486 (755)
++-.+..|..+++..|+.+..++... ......|+..|..++.++.+..+.+..
T Consensus 548 ~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~ 601 (713)
T PF05622_consen 548 KLRELKDELQKKREQLEELEQELNQSLSQKIEELEEALQKKEEEMRAMEERYKK 601 (713)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHH
Confidence 34445566677777777777777655 666677888888888888877665443
No 199
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.52 E-value=5e+02 Score=28.35 Aligned_cols=50 Identities=30% Similarity=0.279 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004412 151 NEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHS 204 (755)
Q Consensus 151 ~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS 204 (755)
++-.+|++-|+ +..++-+.+-.+..++|...+.--+.|.|+.++-.-+++
T Consensus 145 ~E~~~EkeeL~----~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~ 194 (290)
T COG4026 145 EELQKEKEELL----KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVY 194 (290)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 33344455554 345555555666777777777777777666665555544
No 200
>PTZ00121 MAEBL; Provisional
Probab=22.42 E-value=2.1e+03 Score=29.62 Aligned_cols=201 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 004412 99 EDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKEL 178 (755)
Q Consensus 99 EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~kel 178 (755)
+|.+|.+-..+-|.--+++-+.|-.|--+.-.+...-.+.-++++.++...-+..- +...+..+..+.+.+..++.|.
T Consensus 1085 ~~~~~~~~~~~~~~~~e~~r~~et~r~ee~r~~ee~~~r~e~arr~eeARrae~~R--r~EeaRKrEeaRraE~aRreEE 1162 (2084)
T PTZ00121 1085 EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDAR--KAEEARKAEDAKRVEIARKAED 1162 (2084)
T ss_pred hhccchhhhHHHhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHH
Q 004412 179 EEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQK 258 (755)
Q Consensus 179 eekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qk 258 (755)
.-+...+.....+-++...+.+-+ + ++.++.--...+++.=|+....-.++.+.++...+ +++.+++-.++.
T Consensus 1163 aRr~EEaRraEeArr~EEaRraEE-~----Rr~EElRraEEaRkaEEaRRlEE~RraEEARraEE---ErR~EE~RraEE 1234 (2084)
T PTZ00121 1163 ARKAEEARKAEDAKKAEAARKAEE-V----RKAEELRKAEDARKAEAARKAEEERKAEEARKAED---AKKAEAVKKAEE 1234 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhh
Q 004412 259 LSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAELETERWKAASQSRH 323 (755)
Q Consensus 259 Ls~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE~E~erWkrlaE~rh 323 (755)
..--..-+|+.=+.+ ..|..-.+-|-.++...+++|+..++.=|+..+-++
T Consensus 1235 aRK~aEEAkraEEeR--------------~~EE~Rk~Eear~a~~A~r~aa~k~Ee~RrAee~~k 1285 (2084)
T PTZ00121 1235 AKKDAEEAKKAEEER--------------NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK 1285 (2084)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHH
No 201
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.27 E-value=3.3e+02 Score=23.97 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=36.5
Q ss_pred HHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHHHHh
Q 004412 432 RWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQFISQ 487 (755)
Q Consensus 432 RwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql~~~ 487 (755)
--|+..+|+-++-..--|+.||.-|++..+.-..|. ..++.|.++|...
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~-------~~l~~L~~rl~~~ 55 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLR-------DHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 347788888888888889999999888887765554 3456677777654
No 202
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=22.13 E-value=9.2e+02 Score=25.68 Aligned_cols=55 Identities=27% Similarity=0.290 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 004412 81 QKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINE 135 (755)
Q Consensus 81 ~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E 135 (755)
+.|...|.++.+.+.+...--+.+......+..+++......+.+..+|..|...
T Consensus 197 ~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ek 251 (297)
T PF02841_consen 197 QQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEK 251 (297)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666655444433333344444445555555555555555555544443
No 203
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=21.99 E-value=1.8e+02 Score=30.45 Aligned_cols=75 Identities=20% Similarity=0.234 Sum_probs=45.3
Q ss_pred HhhhhhhhhhcHHHHHHHHHHhhhHHHH-------HHHhhhccchhcccccccccccc--------hhhhHHHHHH----
Q 004412 661 QVGRYQSLQGKIDDICKRLHETGQKLME-------VQSKIASGFVEFTEELDKFACFD--------KKRFADSLTT---- 721 (755)
Q Consensus 661 qv~RYQsL~~KiDdLC~Rm~~TgQKlme-------~qs~i~~~~~~~~~~~~~~~~~d--------~~R~~d~i~~---- 721 (755)
+++-|-.=-+++-+.|++|..-|..+++ -|...+.|+..++-+--+++.+| +.+|.+.+++
T Consensus 3 ~l~~~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~ 82 (207)
T cd07636 3 RLKSHEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDE 82 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556677777777775555555 78888888777663333333344 6777777765
Q ss_pred ---hHHHHhhhhhHHHH
Q 004412 722 ---LFQEVQRGLEVRIA 735 (755)
Q Consensus 722 ---lf~evQRgLEvria 735 (755)
|+..+|+-|-=.|.
T Consensus 83 r~~L~~qa~~~l~~~L~ 99 (207)
T cd07636 83 RTRMIENASEVLITPLE 99 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556665543333
No 204
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=21.89 E-value=1.2e+02 Score=27.01 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=42.6
Q ss_pred HHHHHHHHh--hhhhhhhhcHHHHHHHHHHhhhHHHHHHHhhhccchhcccccccccccchhhhHHHH
Q 004412 654 LISLLNKQV--GRYQSLQGKIDDICKRLHETGQKLMEVQSKIASGFVEFTEELDKFACFDKKRFADSL 719 (755)
Q Consensus 654 ~~sll~Kqv--~RYQsL~~KiDdLC~Rm~~TgQKlme~qs~i~~~~~~~~~~~~~~~~~d~~R~~d~i 719 (755)
+-.|+..|| |+|+|.++=|.+.-+.+++--.++-.++..|..|.. -|....||+.-|+...
T Consensus 13 ~~~~i~~~V~sG~Y~s~SEvvR~aLRlle~~e~~~~~Lr~~l~~g~~-----sG~~~~~~~~~~~~~~ 75 (80)
T PF03693_consen 13 LEAFIEEQVASGRYSSASEVVREALRLLEEREAKLEALREALQEGLE-----SGESEPFDMDDILARA 75 (80)
T ss_dssp HHHHHHHHHCTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----T-EESS--HHHHHHHC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCCCCCHHHHHHHH
Confidence 345666666 799999999999999887767788889988876643 2334468887776543
No 205
>PRK09039 hypothetical protein; Validated
Probab=21.81 E-value=1.1e+03 Score=26.05 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 004412 240 EELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSA 279 (755)
Q Consensus 240 ~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSa 279 (755)
.+|......-.+....++.|..+|+-||..+..=+.-|.+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444566666777777777777765444444443
No 206
>PLN02943 aminoacyl-tRNA ligase
Probab=21.64 E-value=2.6e+02 Score=34.81 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 119 FSERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRE 194 (755)
Q Consensus 119 ~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE 194 (755)
..|+.||..+|..+.+|+ ..++.+|.-..++.-.....++.++.|..+++++|...+.....|++
T Consensus 888 ~~E~~rL~K~l~klekei-----------~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 888 SAEVERLSKRLSKMQTEY-----------DALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666555554 44667777777877666677777788888888888888777766653
No 207
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.61 E-value=6e+02 Score=25.88 Aligned_cols=58 Identities=36% Similarity=0.476 Sum_probs=29.9
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004412 78 KLSQKLDAAEREIEELKKLRHEDAKANEKVVGIFAAQEQSWFSERKQLRQQIGALINELRILD 140 (755)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~EDAKANeKVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le 140 (755)
.+..++..+..++.+++....+ ..+++...-.+.+.+ .||..+..++..|..++..+.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~---l~~~i~~~~~~r~~~--~eR~~~l~~l~~l~~~~~~l~ 123 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEE---LEEKIEEAKKGREES--EEREELLEELEELKKELKELK 123 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555444443322 222333333333333 777778877777777666554
No 208
>smart00338 BRLZ basic region leucin zipper.
Probab=21.56 E-value=1.6e+02 Score=24.48 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHH
Q 004412 435 LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEA 468 (755)
Q Consensus 435 llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEa 468 (755)
+-.+|.++..|.+..+.|..+++.++.++..|..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544443
No 209
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.37 E-value=9.1e+02 Score=27.61 Aligned_cols=18 Identities=50% Similarity=0.619 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 004412 123 KQLRQQIGALINELRILD 140 (755)
Q Consensus 123 KrLr~qI~al~~E~~~le 140 (755)
..|+.+|..+.+++..++
T Consensus 74 ~~l~~~l~~l~~~~~~~~ 91 (525)
T TIGR02231 74 AELRKQIRELEAELRDLE 91 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 210
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=21.37 E-value=4.5e+02 Score=28.53 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 004412 123 KQLRQQIGALINELRILDK 141 (755)
Q Consensus 123 KrLr~qI~al~~E~~~le~ 141 (755)
+.|++++..+..+++.|..
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4688888888888888875
No 211
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=21.30 E-value=7.9e+02 Score=24.14 Aligned_cols=16 Identities=0% Similarity=0.152 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHHHHHH
Q 004412 249 KEESVSFAQKLSLEIV 264 (755)
Q Consensus 249 kee~~~~~qkLs~El~ 264 (755)
.+.+..++.+...++.
T Consensus 156 ~~~~~~li~~~i~~l~ 171 (175)
T PRK14472 156 ADKQKKVVDSMIQDLS 171 (175)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3556666666666654
No 212
>smart00338 BRLZ basic region leucin zipper.
Probab=21.21 E-value=1.3e+02 Score=25.05 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=30.6
Q ss_pred hhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHH
Q 004412 446 QSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQF 484 (755)
Q Consensus 446 rS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql 484 (755)
+.++++|+.++..+..+|..|.+-+..=..|+..|+.++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888888888888888887777777888887765
No 213
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=21.19 E-value=6.8e+02 Score=23.34 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHHhhHHHHHHH
Q 004412 150 LNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFI--ELVSNQRQLEAE 227 (755)
Q Consensus 150 L~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~l--El~s~QrqlEae 227 (755)
+..-|.+-+..+. ..+.+.+..+.+.+..++.++..-.+. +.++++...+.+..-+... -+..++.+++..
T Consensus 30 i~~~l~~R~~~I~---~~l~~Ae~~~~ea~~~~~~~e~~L~~a----~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~ 102 (140)
T PRK07353 30 VGKVVEEREDYIR---TNRAEAKERLAEAEKLEAQYEQQLASA----RKQAQAVIAEAEAEADKLAAEALAEAQAEAQAS 102 (140)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 455666666667777766666655444 3343333333333222222 355666777777
Q ss_pred HHHHHHHHHHhHHHH
Q 004412 228 LGRAHRQVEARKEEL 242 (755)
Q Consensus 228 L~rA~~~l~a~~~EL 242 (755)
+..|..++..-+...
T Consensus 103 ~~~a~~~i~~e~~~a 117 (140)
T PRK07353 103 KEKARREIEQQKQAA 117 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777766655544
No 214
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=21.19 E-value=1.4e+02 Score=29.35 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=37.4
Q ss_pred HHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHHHHhhh
Q 004412 443 KRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQFISQLK 489 (755)
Q Consensus 443 ~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql~~~~~ 489 (755)
+.+-++++++.+-|.-..---.+|++-+-.|+.|+..|+++|.....
T Consensus 76 ~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 76 ARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777778999999999999999999887654
No 215
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.07 E-value=1e+03 Score=25.47 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH-HHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhH
Q 004412 175 RKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAF-IELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESV 253 (755)
Q Consensus 175 ~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~-lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~ 253 (755)
.-+|-.+-..-...+--||+-.+.|++-|. -|.++. ||+..-+..+| ++.++.++..-+
T Consensus 61 ~~eLm~r~~~Y~~~vrslR~~fr~Ev~r~~----e~~~g~~ie~~~e~eaaE----------------~~el~a~N~a~N 120 (227)
T KOG4691|consen 61 FFELMERYQHYRQTVRSLRMEFRSEVQRVH----EARAGVLIERKAEKEAAE----------------HRELMAWNQAEN 120 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchhHHHhhhhhHHHH----------------HHHHHHHhHHHH
Confidence 356666777777888888888888888766 677765 47766665544 233333333222
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004412 254 SFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAELETE 313 (755)
Q Consensus 254 ~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE~E~e 313 (755)
.-..++. +.++.+|-..+...|. +.+.++..--+|.++|||.|--
T Consensus 121 ~~~~~~R--~~Rla~~~~E~~~~i~-------------ee~~~~~e~~~a~k~qae~eVl 165 (227)
T KOG4691|consen 121 RRLHELR--IARLAQEEREQEQRIA-------------EEQARKAEEVQAWKQQAEREVL 165 (227)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 3455555444433332 3455666667788888887653
No 216
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.55 E-value=7.5e+02 Score=24.79 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004412 108 VGIFAAQEQSWFSERKQLRQQIGALINELRILDK 141 (755)
Q Consensus 108 v~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~ 141 (755)
+.||.++ .+|-.++..+..+...+..
T Consensus 20 ~~li~ay--------~~L~d~~~~l~~~~~~l~~ 45 (194)
T PF08614_consen 20 AELIDAY--------NRLADRTSLLKAENEQLQP 45 (194)
T ss_dssp ----------------------------------
T ss_pred ccccccc--------ccccccccccccccccccc
Confidence 4566666 6777788777777766654
No 217
>smart00150 SPEC Spectrin repeats.
Probab=20.53 E-value=4.8e+02 Score=21.33 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=43.9
Q ss_pred HHHHHHHhhhhhhhhhcHHHHHHHHHH---hhhHHHHHHHhhhccchhcccccccccccchhhhHHHHHHhHHHHhhhhh
Q 004412 655 ISLLNKQVGRYQSLQGKIDDICKRLHE---TGQKLMEVQSKIASGFVEFTEELDKFACFDKKRFADSLTTLFQEVQRGLE 731 (755)
Q Consensus 655 ~sll~Kqv~RYQsL~~KiDdLC~Rm~~---TgQKlme~qs~i~~~~~~~~~~~~~~~~~d~~R~~d~i~~lf~evQRgLE 731 (755)
++-+..++++++.++..|+....++.. +|+.|+.. + ....-.+..-.+.|.+-+..|+..++
T Consensus 30 ~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~------~---------~~~~~~i~~~~~~l~~~w~~l~~~~~ 94 (101)
T smart00150 30 LESVEALLKKHEALEAELEAHEERVEALNELGEQLIEE------G---------HPDAEEIEERLEELNERWEELKELAE 94 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc------C---------CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778888888777766644 88888864 1 11233455667778888888877777
Q ss_pred HHHHH
Q 004412 732 VRIAR 736 (755)
Q Consensus 732 vriaR 736 (755)
-|-.+
T Consensus 95 ~r~~~ 99 (101)
T smart00150 95 ERRQK 99 (101)
T ss_pred HHHHh
Confidence 66443
No 218
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=20.15 E-value=7.1e+02 Score=23.15 Aligned_cols=78 Identities=27% Similarity=0.266 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004412 169 EEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVL 246 (755)
Q Consensus 169 Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~ 246 (755)
.....-..+.+..|..+..-+.++.+.|+.++.....++. -+.++---+..++.+.|.+-.+|..++..-=..|..+-
T Consensus 6 ~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a 85 (103)
T PRK08404 6 KEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKA 85 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666777777777777777777777777666653 44455556777888888888888777755555554333
No 219
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=20.13 E-value=34 Score=41.55 Aligned_cols=130 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHH
Q 004412 177 ELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFA 256 (755)
Q Consensus 177 eleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~ 256 (755)
+++-+|..=+.-.+++|-...+.+-..-+.|.-++..=-+++...+.||.+|+-.-.+++.++.... +..-..
T Consensus 504 e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~-------e~~k~~ 576 (859)
T PF01576_consen 504 EIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANE-------EAQKQL 576 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH-------HHHHHH
Confidence 3334444444444445544444444444444333333335566666677777666666666554333 333333
Q ss_pred HHHHHHHHHHhhhhhhhHHHH-------HHHHhhccCChHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004412 257 QKLSLEIVKMRKDLDQKDKIL-------SAMLRKSKSDTAEKQMLLKEVKISKAKRRQAELETE 313 (755)
Q Consensus 257 qkLs~El~klRkd~e~KDkil-------SaMLrkSklD~~EKemLlrEvk~~kAkrK~AE~E~e 313 (755)
.++...|.-++.++++--... ..+-++.+.=..|.+.+--.+..+...|++||.|.+
T Consensus 577 kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~ 640 (859)
T PF01576_consen 577 KKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELD 640 (859)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555432222 234455566667778888888888888888888763
Done!