Query 004412
Match_columns 755
No_of_seqs 35 out of 37
Neff 2.8
Searched_HMMs 29240
Date Tue Mar 26 00:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 95.7 0.82 2.8E-05 59.9 23.4 51 257-321 2038-2095(3245)
2 1i84_S Smooth muscle myosin he 95.5 0.33 1.1E-05 57.5 17.9 54 433-486 1109-1162(1184)
3 1i84_S Smooth muscle myosin he 94.6 0.39 1.3E-05 56.9 15.0 18 258-275 952-969 (1184)
4 1c1g_A Tropomyosin; contractIl 92.6 6 0.0002 36.0 35.7 56 428-483 225-280 (284)
5 3na7_A HP0958; flagellar bioge 91.5 12 0.0004 37.2 20.9 56 226-281 97-152 (256)
6 2v71_A Nuclear distribution pr 90.7 12 0.00041 37.0 16.8 48 223-274 134-181 (189)
7 3vkg_A Dynein heavy chain, cyt 84.8 28 0.00097 46.2 19.5 73 226-298 2049-2132(3245)
8 2dfs_A Myosin-5A; myosin-V, in 80.5 39 0.0013 40.4 17.1 18 143-160 958-975 (1080)
9 2ocy_A RAB guanine nucleotide 69.5 83 0.0028 30.3 16.0 75 166-243 65-139 (154)
10 3ghg_A Fibrinogen alpha chain; 68.6 44 0.0015 37.8 12.6 128 149-301 50-188 (562)
11 2fxo_A Myosin heavy chain, car 67.2 74 0.0025 28.9 16.8 94 169-273 30-123 (129)
12 3oja_B Anopheles plasmodium-re 64.1 1.3E+02 0.0046 31.9 15.0 8 128-135 464-471 (597)
13 3o0z_A RHO-associated protein 62.1 1.2E+02 0.0042 29.6 16.0 115 146-268 7-132 (168)
14 2zuo_A MVP, major vault protei 58.3 3E+02 0.01 32.9 18.0 92 146-241 705-796 (861)
15 3tnu_A Keratin, type I cytoske 56.5 1.2E+02 0.004 27.6 12.6 42 223-271 88-129 (131)
16 2dfs_A Myosin-5A; myosin-V, in 56.2 3.3E+02 0.011 32.7 25.4 50 222-274 994-1043(1080)
17 3nmd_A CGMP dependent protein 55.7 8.8 0.0003 33.1 3.4 37 418-454 32-68 (72)
18 2i1j_A Moesin; FERM, coiled-co 52.9 16 0.00055 40.6 5.9 48 265-312 409-456 (575)
19 3kxe_C Antitoxin protein PARD- 50.2 27 0.00093 30.4 5.7 67 653-724 13-81 (88)
20 2e7s_A RAB guanine nucleotide 50.0 82 0.0028 29.9 9.2 72 166-240 53-124 (135)
21 3tnu_B Keratin, type II cytosk 49.8 1.5E+02 0.005 26.8 13.1 42 223-271 86-127 (129)
22 2eqb_B RAB guanine nucleotide 45.7 1.7E+02 0.0059 26.4 12.6 48 166-213 33-80 (97)
23 3hnw_A Uncharacterized protein 43.9 37 0.0013 31.7 5.9 60 412-471 75-134 (138)
24 2wt7_A Proto-oncogene protein 41.9 38 0.0013 27.5 5.0 46 426-471 10-61 (63)
25 2jee_A YIIU; FTSZ, septum, coi 41.0 1.5E+02 0.0051 26.1 8.8 62 222-283 9-77 (81)
26 3ajw_A Flagellar FLIJ protein; 40.4 1.9E+02 0.0066 25.4 12.8 84 78-161 30-115 (150)
27 4avm_A Bridging integrator 2; 40.3 94 0.0032 30.5 8.5 76 611-702 4-82 (237)
28 1nlw_A MAD protein, MAX dimeri 38.4 83 0.0028 26.8 6.8 60 25-95 16-75 (80)
29 2q12_A DIP13 alpha, DCC-intera 38.1 1E+02 0.0035 30.1 8.3 60 642-702 11-70 (265)
30 1ci6_A Transcription factor AT 36.4 52 0.0018 26.9 5.0 37 435-471 25-61 (63)
31 2b9c_A Striated-muscle alpha t 35.7 2.9E+02 0.0098 26.0 12.5 102 126-243 2-104 (147)
32 1t2k_D Cyclic-AMP-dependent tr 35.0 53 0.0018 26.3 4.8 37 435-471 24-60 (61)
33 3o0z_A RHO-associated protein 34.4 3.4E+02 0.012 26.5 15.7 63 166-228 76-156 (168)
34 1l2p_A ATP synthase B chain; a 34.3 1.7E+02 0.0057 22.9 9.0 55 181-235 3-59 (61)
35 1uru_A Amphiphysin; endocytosi 33.9 55 0.0019 31.0 5.5 109 609-731 6-114 (244)
36 1nkp_A C-MYC, MYC proto-oncoge 32.9 71 0.0024 27.5 5.6 66 25-94 21-86 (88)
37 1d7m_A Cortexillin I; coiled-c 32.8 2.3E+02 0.0077 25.7 8.8 61 122-189 20-83 (101)
38 2xnx_M M protein, M1-BC1; cell 31.1 3.5E+02 0.012 26.1 10.3 74 224-311 64-137 (146)
39 1f5n_A Interferon-induced guan 30.2 6.3E+02 0.021 28.4 14.8 20 251-270 564-583 (592)
40 2i1j_A Moesin; FERM, coiled-co 30.2 97 0.0033 34.5 7.5 24 166-189 328-351 (575)
41 3nmd_A CGMP dependent protein 29.8 1.4E+02 0.0048 25.7 6.7 59 210-268 10-68 (72)
42 1deq_A Fibrinogen (alpha chain 29.0 2.3E+02 0.008 30.9 9.8 105 614-745 63-168 (390)
43 2v4h_A NF-kappa-B essential mo 29.0 2.9E+02 0.0098 25.6 9.0 75 71-145 21-108 (110)
44 3ol1_A Vimentin; structural ge 28.2 2.1E+02 0.0071 25.8 8.0 40 232-271 40-79 (119)
45 3lay_A Zinc resistance-associa 27.8 2.9E+02 0.0099 26.7 9.4 62 246-307 70-131 (175)
46 3okq_A BUD site selection prot 27.4 4.2E+02 0.014 25.4 11.1 80 231-322 8-91 (141)
47 3nr7_A DNA-binding protein H-N 26.7 2.5E+02 0.0084 24.6 7.9 54 136-192 14-68 (86)
48 2l5g_B Putative uncharacterize 24.9 1.1E+02 0.0039 24.1 4.8 34 124-161 6-39 (42)
49 3uul_A Utrophin; spectrin repe 24.0 2.1E+02 0.0073 23.6 6.9 71 655-737 35-108 (118)
50 2v71_A Nuclear distribution pr 22.1 5.8E+02 0.02 25.2 14.5 67 198-267 34-101 (189)
51 1jnm_A Proto-oncogene C-JUN; B 21.9 58 0.002 26.2 2.9 37 435-471 24-60 (62)
52 2b5u_A Colicin E3; high resolu 21.8 9.2E+02 0.032 27.4 16.0 15 268-282 416-430 (551)
53 1pq1_B BCL2-like protein 11; B 21.5 30 0.001 26.0 0.9 11 730-740 4-17 (33)
54 3iv1_A Tumor susceptibility ge 21.4 4.1E+02 0.014 23.2 9.8 56 188-243 8-63 (78)
55 3uun_A Dystrophin; triple heli 20.5 2.7E+02 0.0092 22.8 6.8 71 655-737 35-108 (119)
56 3oja_A Leucine-rich immune mol 20.0 7.6E+02 0.026 25.7 11.7 103 206-308 354-475 (487)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.66 E-value=0.82 Score=59.87 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHhhhh
Q 004412 257 QKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAE-------LETERWKAASQS 321 (755)
Q Consensus 257 qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE-------~E~erWkrlaE~ 321 (755)
++|-..|+.|+.+.+.. +.||+.|-.++..++.+=..|+ -|..||..-.+.
T Consensus 2038 ~~le~~l~~L~~~~~~~--------------~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATL--------------IRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 36777777777766543 4588888888888887777665 388999876665
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.50 E-value=0.33 Score=57.51 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHHHHH
Q 004412 433 WRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQFIS 486 (755)
Q Consensus 433 wrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~ql~~ 486 (755)
-.+-.++.++++++.+++.|..++...+.....++.-...-..++..|+.++..
T Consensus 1109 ~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555544433333333333334455555554443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.59 E-value=0.39 Score=56.94 Aligned_cols=18 Identities=11% Similarity=0.525 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhHH
Q 004412 258 KLSLEIVKMRKDLDQKDK 275 (755)
Q Consensus 258 kLs~El~klRkd~e~KDk 275 (755)
++..++..+++++++-..
T Consensus 952 ~le~el~~L~~eleele~ 969 (1184)
T 1i84_S 952 KMQQQMLDLEEQLEEEEA 969 (1184)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555544333
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=92.57 E-value=6 Score=36.03 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHHhhHHHHHHHHHH
Q 004412 428 LEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLFEREEELHSLKEQ 483 (755)
Q Consensus 428 LEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~~Re~El~sLk~q 483 (755)
+...+-.+-.++.++..+...+..++..+..++..-..++.-+..-..++..+.++
T Consensus 225 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
T 1c1g_A 225 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333333333333333333333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.53 E-value=12 Score=37.17 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 004412 226 AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAML 281 (755)
Q Consensus 226 aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaML 281 (755)
.++.-+.+.....+.++..++++.+........+...+..++.+++.+-.-+.+-+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 152 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEV 152 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555556666655555555666667777766666655554433
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.68 E-value=12 Score=37.01 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhH
Q 004412 223 QLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKD 274 (755)
Q Consensus 223 qlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KD 274 (755)
.+|..|+.|.....=...||+. |+.....+|+|-+|+--|+.|+.-++
T Consensus 134 D~e~kln~aiEr~alLE~El~E----Ke~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 134 DFEQRLNQAIERNAFLESELDE----KESLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777788777777777763 77777788899999988888875443
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.80 E-value=28 Score=46.23 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhh---------hHHHHHH-HHh-hccCChHHHHHH
Q 004412 226 AELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQ---------KDKILSA-MLR-KSKSDTAEKQML 294 (755)
Q Consensus 226 aeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~---------KDkilSa-MLr-kSklD~~EKemL 294 (755)
+++..+.++-..-+.+++.+...-+-+..++..|+.|=.+=...+++ -|.+||+ .+- -.-++..-|+.|
T Consensus 2049 ~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l 2128 (3245)
T 3vkg_A 2049 EEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDL 2128 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 33333444444444444444444444444444555554443333322 3445543 222 235677888888
Q ss_pred HHHH
Q 004412 295 LKEV 298 (755)
Q Consensus 295 lrEv 298 (755)
+..-
T Consensus 2129 ~~~W 2132 (3245)
T 3vkg_A 2129 MRKW 2132 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.53 E-value=39 Score=40.43 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=9.4
Q ss_pred chhhHHHHHHHHHHHHHH
Q 004412 143 KDESISELNEKLKDMELL 160 (755)
Q Consensus 143 k~~~i~EL~~kLkE~E~l 160 (755)
...++++|++.+.+++.+
T Consensus 958 ~~~e~~~L~~~l~~le~~ 975 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMS 975 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555553
No 9
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.51 E-value=83 Score=30.31 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 004412 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (755)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (755)
.++.+++.++.+.+.....++.-.++|=-.+=.||.+-.++=++.+.++ | ..-.+|+++|+-+-.-++.-...|.
T Consensus 65 ~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~-e--~r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 65 EDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAI-E--ILNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888899999999999999999996666778777766665555443 2 2234566777766666666555554
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=68.62 E-value=44 Score=37.80 Aligned_cols=128 Identities=6% Similarity=0.096 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH-HHHhhHHHHHHH
Q 004412 149 ELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFI-ELVSNQRQLEAE 227 (755)
Q Consensus 149 EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~l-El~s~QrqlEae 227 (755)
+|+--|-++|.=+. +.|++-++.-.++...-+-++....++.+.++..+..+. +.....-.+. ||+....-|+.+
T Consensus 50 rLQglLdkqErDlt---krINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFT---NRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 445555555555544555555555555555544433322 4444444443 555555444444
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc----------cCChHHHHHHHHH
Q 004412 228 LGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKS----------KSDTAEKQMLLKE 297 (755)
Q Consensus 228 L~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkS----------klD~~EKemLlrE 297 (755)
+..-+.++.+-+.-|+ ++..+|.+| ++-|.+.||-- ++|.+.-+.+-|-
T Consensus 126 VdnQlsnIrvLQsnLe--------------dq~~kIQRL-------EvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQ 184 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVR--------------AQLVDMKRL-------EVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQ 184 (562)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHH-------HHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHH-------HHHHHHHHHhccccccchheeecchHHHHHHHHH
Confidence 4444444444343333 444444444 44566666642 4566666655544
Q ss_pred HHHH
Q 004412 298 VKIS 301 (755)
Q Consensus 298 vk~~ 301 (755)
|.++
T Consensus 185 LeQv 188 (562)
T 3ghg_A 185 LEQV 188 (562)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=67.25 E-value=74 Score=28.89 Aligned_cols=94 Identities=26% Similarity=0.340 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 004412 169 EEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQ 248 (755)
Q Consensus 169 Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~ 248 (755)
+.....+++|+.+...+..--..|...+..|-.. .+ -..+.+--|.....+||..|.-+...++.-......+..
T Consensus 30 ~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~-l~---e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~- 104 (129)
T 2fxo_A 30 EKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN-LA---DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA- 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3556667777777777776666666655443222 11 222333356667777887777666665554444443333
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhh
Q 004412 249 KEESVSFAQKLSLEIVKMRKDLDQK 273 (755)
Q Consensus 249 kee~~~~~qkLs~El~klRkd~e~K 273 (755)
--.+|-.++.-|++++++-
T Consensus 105 ------~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 105 ------KKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHH
Confidence 3346777777888877764
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.05 E-value=1.3e+02 Score=31.91 Aligned_cols=8 Identities=38% Similarity=0.601 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 004412 128 QIGALINE 135 (755)
Q Consensus 128 qI~al~~E 135 (755)
.|..+.++
T Consensus 464 ~i~~l~~~ 471 (597)
T 3oja_B 464 EVQQLTNE 471 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=62.09 E-value=1.2e+02 Score=29.60 Aligned_cols=115 Identities=22% Similarity=0.234 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH-HHHhhHHHH
Q 004412 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFI-ELVSNQRQL 224 (755)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~l-El~s~Qrql 224 (755)
.|..|+++|.|+...+. ...|...+=+|..++ +-+.+..+ |.+.+|+|+...-|.+++.++= |+..-|-+|
T Consensus 7 Ki~~LekQL~E~n~kLk---~EsE~~~rlkK~~tE----l~k~~~~~-E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLR---TESDTAVRLRKSHTE----MSKSISQL-ESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp ---CTHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777775 333444333332222 11222222 4555666776666777776664 666666666
Q ss_pred HHHH----------HHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 004412 225 EAEL----------GRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRK 268 (755)
Q Consensus 225 EaeL----------~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRk 268 (755)
+.|- +-.-..+.+...||+.+...-...-.=-..|..-|..|.|
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432 1111134444455554444333333333444444444444
No 14
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=58.33 E-value=3e+02 Score=32.86 Aligned_cols=92 Identities=22% Similarity=0.175 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHH
Q 004412 146 SISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLE 225 (755)
Q Consensus 146 ~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlE 225 (755)
.+-+|+.+.--.|.-..++-.+.-..+..+.+-+..+..|+.-+.-+ +.+......-+.+-+++.|.-...|.+||
T Consensus 705 ~Llel~a~s~aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~----~i~~~ael~~~~~~~~~el~~~~~~~ele 780 (861)
T 2zuo_A 705 ELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQAL----AIETEAELERVKKVREMELIYARAQLELE 780 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555565555444444344444444444444443333211 22222222233456666666666666666
Q ss_pred HHHHHHHHHHHHhHHH
Q 004412 226 AELGRAHRQVEARKEE 241 (755)
Q Consensus 226 aeL~rA~~~l~a~~~E 241 (755)
-.-++++.++++.+.+
T Consensus 781 ~~k~~~la~ie~~kf~ 796 (861)
T 2zuo_A 781 VSKAQQLANVEAKKFK 796 (861)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666554
No 15
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.49 E-value=1.2e+02 Score=27.60 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 004412 223 QLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLD 271 (755)
Q Consensus 223 qlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e 271 (755)
.||++|..+..++..-..|...++-.|- .|-.||++-||=+|
T Consensus 88 ~lE~eL~~~r~em~~ql~EYq~Ll~vKl-------~Ld~EIatYRkLLE 129 (131)
T 3tnu_A 88 SVEEQLAQLRCEMEQQNQEYKILLDVKT-------RLEQEIATYRRLLE 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHC
Confidence 4566666666666655555554444332 46667777776543
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=56.16 E-value=3.3e+02 Score=32.72 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhH
Q 004412 222 RQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKD 274 (755)
Q Consensus 222 rqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KD 274 (755)
.+++.++.++.++....+..++.+. ++-...+..|..|..+||+.+++-.
T Consensus 994 ~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 994 AKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444443333 2333566677888888887665543
No 17
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.66 E-value=8.8 Score=33.08 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=29.8
Q ss_pred HHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhh
Q 004412 418 AEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNH 454 (755)
Q Consensus 418 ~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~ 454 (755)
.+++|.||+++...=-+|-..|.+++.||++++.+.+
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3558888888888888888888888888888887754
No 18
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=52.91 E-value=16 Score=40.60 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=8.2
Q ss_pred HHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhHHHH
Q 004412 265 KMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQAELET 312 (755)
Q Consensus 265 klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~AE~E~ 312 (755)
.|-+++..++..++.|-.-+.---+|...|=.++..++...+.|..+-
T Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l 456 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAAL 456 (575)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666677777777666666554444443
No 19
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=50.19 E-value=27 Score=30.43 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=51.8
Q ss_pred HHHHHHHHHhh--hhhhhhhcHHHHHHHHHHhhhHHHHHHHhhhccchhcccccccccccchhhhHHHHHHhHH
Q 004412 653 SLISLLNKQVG--RYQSLQGKIDDICKRLHETGQKLMEVQSKIASGFVEFTEELDKFACFDKKRFADSLTTLFQ 724 (755)
Q Consensus 653 ~~~sll~Kqv~--RYQsL~~KiDdLC~Rm~~TgQKlme~qs~i~~~~~~~~~~~~~~~~~d~~R~~d~i~~lf~ 724 (755)
.+..++..||. +|+|-++=|-|+-+.+.+.-++|-+++..|..|.. .|. ...+|..-|+..++.-++
T Consensus 13 ~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~~l~~Lr~~l~~G~~--Sg~---~~~~d~d~v~a~~~~~~~ 81 (88)
T 3kxe_C 13 HFQAFIDSQVADGRYGSASEVIRAGLRLLEENEAKLAALRAALIEGEE--SGF---IEDFDFDAFIEERSRASA 81 (88)
T ss_dssp HHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCE---ESSCCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--CCC---CCCCCHHHHHHHHHHHHh
Confidence 45667777775 89999999999999998888899999999998876 222 345888888777776544
No 20
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.02 E-value=82 Score=29.87 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHH
Q 004412 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKE 240 (755)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~ 240 (755)
.++.+++.+|.+++.....++.-.++|--.+=.||.+-.++=++.+..+ | ..-.+|+++|+-+-.-+++-..
T Consensus 53 ~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~-e--~r~~~L~~ql~e~e~ll~~lq~ 124 (135)
T 2e7s_A 53 EDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAI-E--ILNKRLTEQLREKDMLLDTLTL 124 (135)
T ss_dssp HHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH-H--HHHHHHHHTTTHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888999999999999999996666677777666655554443 2 2223455555555444444433
No 21
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.84 E-value=1.5e+02 Score=26.80 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 004412 223 QLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLD 271 (755)
Q Consensus 223 qlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e 271 (755)
.||++|..+..++..-..|...++-.|- .|-.||++-||=+|
T Consensus 86 ~lE~eL~~~r~e~~~ql~EYq~LlnvKl-------~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 86 ELEEALQKAKQDMARLLREYQELMNTKL-------ALDVEIATYRKLLE 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHC
Confidence 3556666666665555555554444332 45567777776443
No 22
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.72 E-value=1.7e+02 Score=26.40 Aligned_cols=48 Identities=25% Similarity=0.294 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHH
Q 004412 166 RVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSNEIRKHKTA 213 (755)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~dl~Khk~a 213 (755)
..+.+++.+|..++.....++.-.++|--.+=.||.+-.++=++.+..
T Consensus 33 ~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~ 80 (97)
T 2eqb_B 33 EDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYA 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999666667777766655554443
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.87 E-value=37 Score=31.71 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=48.6
Q ss_pred hhHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHH
Q 004412 412 LELEAFAEQMRMKDEKLEGYRWRLLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLF 471 (755)
Q Consensus 412 ~EIeAF~eQmRlKDEKLEaFRwrllsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~ 471 (755)
.+++.+..++.-+++.+....-.|.+...++..+..+++.|..++..+...+.+||+=+.
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778877888888888888888888888888888888888888888888876554
No 24
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.93 E-value=38 Score=27.51 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=28.6
Q ss_pred hhHHHHHHH------hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHH
Q 004412 426 EKLEGYRWR------LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLF 471 (755)
Q Consensus 426 EKLEaFRwr------llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~ 471 (755)
-|+.|-|.+ ...|+.++..|.+.-..|..++..++.+...|..+|.
T Consensus 10 NR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 10 NKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566655 5566666666666666666666666666666665553
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.95 E-value=1.5e+02 Score=26.05 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHH-------HHHHHHHHhhhhhhhHHHHHHHHhh
Q 004412 222 RQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQK-------LSLEIVKMRKDLDQKDKILSAMLRK 283 (755)
Q Consensus 222 rqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qk-------Ls~El~klRkd~e~KDkilSaMLrk 283 (755)
.+||+-...|+.-+.--.-|++.+-+.+..-+.=++. |-.|...|+.+....+.=|.+||.|
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777776666666666555554443333333 7779999999999999999999977
No 26
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=40.45 E-value=1.9e+02 Score=25.44 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=55.5
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhhhhh--hHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHH
Q 004412 78 KLSQKLDAAEREIEELKKLRHEDAKANE--KVVGIFAAQEQSWFSERKQLRQQIGALINELRILDKKKDESISELNEKLK 155 (755)
Q Consensus 78 ~L~~kL~~AE~ei~eLKkrR~EDAKANe--KVv~IfAsheqsW~~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLk 155 (755)
...+.+..++.++.+|...|.+=..... -..||-++.=+.|..=-..|...|......+..++..-+..-..+.++-.
T Consensus 30 ~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~ 109 (150)
T 3ajw_A 30 EMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQ 109 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888899999887765322211 12466666667777778888888888888888877765555555555544
Q ss_pred HHHHHH
Q 004412 156 DMELLV 161 (755)
Q Consensus 156 E~E~l~ 161 (755)
+...+-
T Consensus 110 ~~k~~e 115 (150)
T 3ajw_A 110 RLQAWQ 115 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 27
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=40.29 E-value=94 Score=30.51 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=47.5
Q ss_pred ccccchhHHHHHHHHHHHHHHhhcCCCCCCCcCCccchhhHHHHHHHHHHHhhhhhhhhhcHHHHHHHH---HHhhhHHH
Q 004412 611 LHALGVSYKLKRLKQQLLMLERFTGKSGEDTESNDDGIKGLLSLISLLNKQVGRYQSLQGKIDDICKRL---HETGQKLM 687 (755)
Q Consensus 611 ~~algVSyKikrLkqqll~lErl~g~~~e~~~~~~~~~r~~~~~~sll~Kqv~RYQsL~~KiDdLC~Rm---~~TgQKlm 687 (755)
+=+-||+.|++|..|++.. ++ |.++.+... -.+..++||+.++.-+--|.+-+ .+.-+.++
T Consensus 4 ~~~k~~~K~~~R~~q~lkq--k~-G~~e~T~D~-------------~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~ 67 (237)
T 4avm_A 4 LFAKQVQKKFSRAQEKVLQ--KL-GKAVETKDE-------------RFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMH 67 (237)
T ss_dssp ---CHHHHHHHHHHHHHHH--HT-TSSCCCCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHH--Hc-CCCcccccH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467999999999998876 34 775433221 13445666766666555444444 33666777
Q ss_pred HHHHhhhccchhccc
Q 004412 688 EVQSKIASGFVEFTE 702 (755)
Q Consensus 688 e~qs~i~~~~~~~~~ 702 (755)
..|.+++..+..+-+
T Consensus 68 ~~q~~~~~~l~~~y~ 82 (237)
T 4avm_A 68 ESSKRVSETLQEIYS 82 (237)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888776443
No 28
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=38.37 E-value=83 Score=26.78 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=34.6
Q ss_pred HHHHHHHhhhccccCCCCchhhHHHHHHHHhHHHHHHHHHHHHhhccccchhhhHHhHHHHHHHHHHHHHH
Q 004412 25 VSCAFFALRMLSVAETKDDKWSELHDKMLRGSAQLLGLLVWRVQRDGANGEKCKLSQKLDAAEREIEELKK 95 (755)
Q Consensus 25 Vs~Af~AL~~L~~~~~~d~k~~~~lq~MLkgs~~~LglLa~naq~e~~~g~~~~L~~kL~~AE~ei~eLKk 95 (755)
+=-.|++|+.+.+...+..+.+.+ .+|+.|++|..-|-...+ .|.+.......++.+|++
T Consensus 16 lk~~f~~Lr~~vP~~~~~~k~sk~--~iL~kA~~yI~~L~~~~~---------~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 16 LRLSLEKLKGLVPLGPDSSRHTTL--SLLTKAKLHIKKLEDSDR---------KAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHSSCCCSSSCCCTTH--HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 345788999984322233454443 677889998877655432 233344445555555543
No 29
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=38.06 E-value=1e+02 Score=30.06 Aligned_cols=60 Identities=12% Similarity=0.208 Sum_probs=47.1
Q ss_pred cCCccchhhHHHHHHHHHHHhhhhhhhhhcHHHHHHHHHHhhhHHHHHHHhhhccchhccc
Q 004412 642 ESNDDGIKGLLSLISLLNKQVGRYQSLQGKIDDICKRLHETGQKLMEVQSKIASGFVEFTE 702 (755)
Q Consensus 642 ~~~~~~~r~~~~~~sll~Kqv~RYQsL~~KiDdLC~Rm~~TgQKlme~qs~i~~~~~~~~~ 702 (755)
+...|+|. |-..+..+..++..-..--.|+-..|+.|.++|..+-..+..++.++..++.
T Consensus 11 e~~~DSP~-FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~ 70 (265)
T 2q12_A 11 ETLEDSPQ-TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEK 70 (265)
T ss_dssp --CCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445565 6677778888888888888888899999999999999999999988887553
No 30
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=36.36 E-value=52 Score=26.86 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHH
Q 004412 435 LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLF 471 (755)
Q Consensus 435 llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~ 471 (755)
.-.|+.++..|..+-..|..+++.++.++..|-.||.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566667777777777777777777777666666654
No 31
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=35.66 E-value=2.9e+02 Score=26.04 Aligned_cols=102 Identities=23% Similarity=0.262 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004412 126 RQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEELRENAKQEAQEHSN 205 (755)
Q Consensus 126 r~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eLrE~akrEaqehS~ 205 (755)
.++|..+.+++.. -+.++.....+|.+.+.- ..+..+.++.|+.+-..-+.-...|-..+ .++...+.
T Consensus 2 ~Rri~llEeeLer----~eerl~~a~~kLeeaek~-------adE~eR~~k~lE~r~~~deEr~~~lE~qL-keak~~ae 69 (147)
T 2b9c_A 2 NRRIQLVEEELDR----AQERLATALQKLEEAEKA-------ADESERGMKVIESRAQKDEEKMEIQEIQL-KEAKHIAE 69 (147)
T ss_dssp ---------CCGG----GGTTTTHHHHHHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred chHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhcccHHHHHHHHHHH-HHHHHHHH
Confidence 4555556555544 334455555555554433 33445555555555554444444431111 12222111
Q ss_pred HH-HhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 004412 206 EI-RKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (755)
Q Consensus 206 dl-~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (755)
+- +|. -|+...=..+|.+|.||-..++++...+.
T Consensus 70 eadrKy----eE~~RKl~~~E~dLeraeeRae~aE~k~~ 104 (147)
T 2b9c_A 70 DADRKY----EEVARKLVIIESDLERAEERAELSEGKCA 104 (147)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 121 23444444566777777777777766665
No 32
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.98 E-value=53 Score=26.33 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHH
Q 004412 435 LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLF 471 (755)
Q Consensus 435 llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~ 471 (755)
.-.+|.++..|.++-..|..++..++.+...|..+|+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666666666666666666655553
No 33
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=34.43 E-value=3.4e+02 Score=26.54 Aligned_cols=63 Identities=29% Similarity=0.458 Sum_probs=43.2
Q ss_pred hhhHHHHHHH-------HHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHhhHHHH-----HHHHhhHHHHHHH
Q 004412 166 RVLEEDEQKR-------KELEEKISIAEKIAEELRE------NAKQEAQEHSNEIRKHKTAF-----IELVSNQRQLEAE 227 (755)
Q Consensus 166 ka~Eee~~k~-------keleekLa~aEk~~~eLrE------~akrEaqehS~dl~Khk~a~-----lEl~s~QrqlEae 227 (755)
.+++++++-+ .++++|+..+..-...++. .-++.+++-.++|.|.+.-. .+|...|.-+|-|
T Consensus 76 a~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE 155 (168)
T 3o0z_A 76 AILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4455555444 5677788888877777776 33678888888888877654 2577777766655
Q ss_pred H
Q 004412 228 L 228 (755)
Q Consensus 228 L 228 (755)
.
T Consensus 156 ~ 156 (168)
T 3o0z_A 156 V 156 (168)
T ss_dssp H
T ss_pred H
Confidence 4
No 34
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=34.31 E-value=1.7e+02 Score=22.92 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004412 181 KISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQV 235 (755)
Q Consensus 181 kLa~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l 235 (755)
.|..+..-+.++.+.++.+++....++. -+.++---+..++.++|.+-.+|..+|
T Consensus 3 ~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~~~L 59 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555666666666666655555543 233333456677777777777777665
No 35
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=33.92 E-value=55 Score=30.99 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=37.9
Q ss_pred ccccccchhHHHHHHHHHHHHHHhhcCCCCCCCcCCccchhhHHHHHHHHHHHhhhhhhhhhcHHHHHHHHHHhhhHHHH
Q 004412 609 MDLHALGVSYKLKRLKQQLLMLERFTGKSGEDTESNDDGIKGLLSLISLLNKQVGRYQSLQGKIDDICKRLHETGQKLME 688 (755)
Q Consensus 609 ~D~~algVSyKikrLkqqll~lErl~g~~~e~~~~~~~~~r~~~~~~sll~Kqv~RYQsL~~KiDdLC~Rm~~TgQKlme 688 (755)
+..-.-|++-+++|..|.+ ++++ |.+..+... .|-.+..-++..-+.++.|...+..++.- -+.++.
T Consensus 6 ~~~~~~~~~k~~~R~~q~~--~~k~-G~~e~t~D~------~fe~~~~~f~~~e~~~~~l~k~~~~y~~~----~~~~~~ 72 (244)
T 1uru_A 6 GIMLAKSVQKHAGRAKEKI--LQNL-GKVDRTADE------IFDDHLNNFNRQQASANRLQKEFNNYIRC----VRAAQA 72 (244)
T ss_dssp ----------------------CCS-SCTTCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH--HHHh-CCCcccCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 4555679999999999976 4565 775543211 14333333333333333333333333332 334555
Q ss_pred HHHhhhccchhcccccccccccchhhhHHHHHHhHHHHhhhhh
Q 004412 689 VQSKIASGFVEFTEELDKFACFDKKRFADSLTTLFQEVQRGLE 731 (755)
Q Consensus 689 ~qs~i~~~~~~~~~~~~~~~~~d~~R~~d~i~~lf~evQRgLE 731 (755)
.|..++..+..+.+...+... -+..+++.+..++++....++
T Consensus 73 ~~~~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 114 (244)
T 1uru_A 73 ASKTLMDSVCEIYEPQWSGYD-ALQAQTGASESLWADFAHKLG 114 (244)
T ss_dssp HHHHHHHHHHHHSCTTSTTHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCch-HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666553222211111 234455556666655554444
No 36
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.91 E-value=71 Score=27.55 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=37.6
Q ss_pred HHHHHHHhhhccccCCCCchhhHHHHHHHHhHHHHHHHHHHHHhhccccchhhhHHhHHHHHHHHHHHHH
Q 004412 25 VSCAFFALRMLSVAETKDDKWSELHDKMLRGSAQLLGLLVWRVQRDGANGEKCKLSQKLDAAEREIEELK 94 (755)
Q Consensus 25 Vs~Af~AL~~L~~~~~~d~k~~~~lq~MLkgs~~~LglLa~naq~e~~~g~~~~L~~kL~~AE~ei~eLK 94 (755)
+--.|.+|+.+.+...+..|++.+ .+|+.|++|+.-|....+.... ....|.++-.....+|.+|+
T Consensus 21 ln~~f~~Lr~~vP~~~~~~K~sK~--~iL~~A~~YI~~L~~~~~~l~~--~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 21 LKRSFFALRDQIPELENNEKAPKV--VILKKATAYILSVQAEEQKLIS--EEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHTTCGGGTTCTTCCHH--HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 456788999884322223455553 5788899999887765443211 12234444555555555553
No 37
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=32.79 E-value=2.3e+02 Score=25.70 Aligned_cols=61 Identities=31% Similarity=0.435 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh---hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004412 122 RKQLRQQIGALINELRILDK---KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIA 189 (755)
Q Consensus 122 rKrLr~qI~al~~E~~~le~---~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~ 189 (755)
+-.|-.|-+.|.+-++.++. ..+++|.+|+.++.+- + +-++.++--+-+|+.||++.|+.-
T Consensus 20 ~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~---L----k~l~~EklAkldLE~RLsKtEKDk 83 (101)
T 1d7m_A 20 REQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET---L----KNLELEKLARMELEARLAKTEKDR 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HcccHHHHHHHHHHHHHhhhhhHH
Confidence 34566666777777777764 4667788888777652 1 556677777789999999998865
No 38
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=31.15 E-value=3.5e+02 Score=26.09 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHH
Q 004412 224 LEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKA 303 (755)
Q Consensus 224 lEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kA 303 (755)
||+.+....+++++++..+..+ ..+++.++.++.+-..-+..+=....|..+-|+-|-|.+..+.+
T Consensus 64 le~~~~~l~rdleasr~akk~~--------------ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASRe 129 (146)
T 2xnx_M 64 LEKELEAITREQEINRNLLGNA--------------KLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASRE 129 (146)
T ss_dssp HTTTTTTHHHHHHTTHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHGGGTTTC----------------
T ss_pred hHhhHHHHHHHHHHHHHHHHhH--------------HHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4445555666777777666633 33333333333333333444445567888889999999999999
Q ss_pred HHHHhHHH
Q 004412 304 KRRQAELE 311 (755)
Q Consensus 304 krK~AE~E 311 (755)
.+|+.|..
T Consensus 130 AKKqlEad 137 (146)
T 2xnx_M 130 AKKQVEKD 137 (146)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99987654
No 39
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.24 E-value=6.3e+02 Score=28.37 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHhhhh
Q 004412 251 ESVSFAQKLSLEIVKMRKDL 270 (755)
Q Consensus 251 e~~~~~qkLs~El~klRkd~ 270 (755)
..-.-+..|..||..|++..
T Consensus 564 g~~~~~~~~~~ei~~l~~~~ 583 (592)
T 1f5n_A 564 GFQKESRIMKNEIQDLQTKM 583 (592)
T ss_dssp TCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444556667777777653
No 40
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=30.22 E-value=97 Score=34.49 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 004412 166 RVLEEDEQKRKELEEKISIAEKIA 189 (755)
Q Consensus 166 ka~Eee~~k~keleekLa~aEk~~ 189 (755)
.+-++.++++.+++.+|...+...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~ 351 (575)
T 2i1j_A 328 AARERAEKKQQEYQDRLRQMQEEM 351 (575)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344556777888888888887665
No 41
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.80 E-value=1.4e+02 Score=25.75 Aligned_cols=59 Identities=24% Similarity=0.219 Sum_probs=41.3
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 004412 210 HKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRK 268 (755)
Q Consensus 210 hk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRk 268 (755)
|--|.||-+-.=++|+..|.+..+++-....-++.+-.+-.+....++.|-.+|.++|.
T Consensus 10 ~~~~~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 10 HGMASIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44567788888888999998888888888777777777777888888888888888763
No 42
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.05 E-value=2.3e+02 Score=30.90 Aligned_cols=105 Identities=13% Similarity=0.236 Sum_probs=62.8
Q ss_pred cchhHHHHHHHHHHHHHHhhcCCCCCCCcCCccchhhHHHHHHHHHHHhhhhhhhhhcHHHHHHHH-HHhhhHHHHHHHh
Q 004412 614 LGVSYKLKRLKQQLLMLERFTGKSGEDTESNDDGIKGLLSLISLLNKQVGRYQSLQGKIDDICKRL-HETGQKLMEVQSK 692 (755)
Q Consensus 614 lgVSyKikrLkqqll~lErl~g~~~e~~~~~~~~~r~~~~~~sll~Kqv~RYQsL~~KiDdLC~Rm-~~TgQKlme~qs~ 692 (755)
--|...|--|++.|--+-+. -++- |+.+..+.+.-.++. .-....|..|.-. .+--++..-||.+
T Consensus 63 r~~~~rIe~L~~~L~~~s~s-~~~~------------~~y~~~~~~~lk~~~-~q~~dndn~~~e~s~eLe~~i~~lk~~ 128 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKN-SKDS------------NTLTKNIVELMRGDF-AKANNNDNTFKQINEDLRSRIEILRRK 128 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHh-hhHH------------HHHHHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888777776 2211 333333333322222 2222333333333 2345666777777
Q ss_pred hhccchhcccccccccccchhhhHHHHHHhHHHHhhhhhHHHHHHhhcccccc
Q 004412 693 IASGFVEFTEELDKFACFDKKRFADSLTTLFQEVQRGLEVRIARIIGDLGGTL 745 (755)
Q Consensus 693 i~~~~~~~~~~~~~~~~~d~~R~~d~i~~lf~evQRgLEvriaRIIGDLeGtL 745 (755)
|-..+. ++++.-.+|+++.-++|| |||=|--+++=--|+.
T Consensus 129 V~~q~~------------~ir~Lq~~l~~q~~kiqR-LE~~Id~c~~~C~~sC 168 (390)
T 1deq_A 129 VIEQVQ------------RINLLQKNVRDQLVDMKR-LEVDIDIKIRSCKGSC 168 (390)
T ss_pred HHHHhH------------HHHHHHHHHHHHHHHHHH-HHHHHHHHhccccccc
Confidence 766554 678888999999999998 8998866665444433
No 43
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.05 E-value=2.9e+02 Score=25.57 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=0.0
Q ss_pred cccchhhhHHhHHHHHHHHH----HHHHHhhhhhhhhhh---hH------HHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 004412 71 GANGEKCKLSQKLDAAEREI----EELKKLRHEDAKANE---KV------VGIFAAQEQSWFSERKQLRQQIGALINELR 137 (755)
Q Consensus 71 ~~~g~~~~L~~kL~~AE~ei----~eLKkrR~EDAKANe---KV------v~IfAsheqsW~~ErKrLr~qI~al~~E~~ 137 (755)
++.-....|..+|..||+.+ .+....+.++++-++ .| |.||-+.-.+=.+-|-++..++..|..+++
T Consensus 21 ~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 21 MASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHH
Q ss_pred Hhhhhchh
Q 004412 138 ILDKKKDE 145 (755)
Q Consensus 138 ~le~~k~~ 145 (755)
.|..+..+
T Consensus 101 ~Lq~q~~~ 108 (110)
T 2v4h_A 101 QLQREFNK 108 (110)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
No 44
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=28.18 E-value=2.1e+02 Score=25.80 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=18.9
Q ss_pred HHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 004412 232 HRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLD 271 (755)
Q Consensus 232 ~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e 271 (755)
..+++.++..++.....-++-..+-+.+-.+++.+||+++
T Consensus 40 ~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 40 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 3333444444444443334444444555555666666554
No 45
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.81 E-value=2.9e+02 Score=26.73 Aligned_cols=62 Identities=23% Similarity=0.214 Sum_probs=47.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHH
Q 004412 246 LEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQ 307 (755)
Q Consensus 246 ~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~ 307 (755)
-+|+..-..+-++-..+...+|+++..|..-|.+++...+.|.+.=..|++|+...+++...
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666667777888888888889999999999999999999888877765433
No 46
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=27.37 E-value=4.2e+02 Score=25.37 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=56.8
Q ss_pred HHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHh--
Q 004412 231 AHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMRKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQA-- 308 (755)
Q Consensus 231 A~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klRkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~A-- 308 (755)
.+.++++.+..|..-+..-. .=+-+|-+=+.-||+|. ..|..+-.+...+-+.+++..+.+.=+..
T Consensus 8 ~R~y~~~~k~kL~~~sd~Lv---tkVDDLQD~VE~LRkDV---------~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~ 75 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLL---SKVDDLQDVIEIMRKDV---------AERRSQPAKKKLETVSKDLENAQADVLKLQE 75 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---------HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHH---HHHhHHHHHHHHHHHHH---------HHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888875443332 33345555566777764 56888999999999999998887765443
Q ss_pred --HHHHHHHHHhhhhh
Q 004412 309 --ELETERWKAASQSR 322 (755)
Q Consensus 309 --E~E~erWkrlaE~r 322 (755)
..|.+-||++||.-
T Consensus 76 ~i~~ekP~WKKiWE~E 91 (141)
T 3okq_A 76 FIDTEKPHWKKTWEAE 91 (141)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHcCchhHHHHHHH
Confidence 35889999999974
No 47
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=26.74 E-value=2.5e+02 Score=24.57 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=36.4
Q ss_pred HHHhhh-hchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004412 136 LRILDK-KKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIAEEL 192 (755)
Q Consensus 136 ~~~le~-~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~~eL 192 (755)
+|++++ .++-.+..|++-+.-...++. ..-+++.....+..+|.++.+++.+.|
T Consensus 14 iR~LRA~arel~le~Lee~leKl~~Vve---ERree~~~~~~~~~er~~Kl~~~~e~l 68 (86)
T 3nr7_A 14 IRTLRAQARESTLETLEEMLEKLEVVVN---ERREEESAAAAEVEERTRKLQQYREML 68 (86)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456665 466788889988888888886 444444455566666766666666555
No 48
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.93 E-value=1.1e+02 Score=24.09 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHH
Q 004412 124 QLRQQIGALINELRILDKKKDESISELNEKLKDMELLV 161 (755)
Q Consensus 124 rLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~ 161 (755)
.|.|+|+-+-.||.. -+..|.+|+.+++++|..+
T Consensus 6 ~l~qkI~kVdrEI~K----te~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 6 ELIQNMDRVDREITM----VEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Confidence 478899998888876 4567899999999888765
No 49
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=23.96 E-value=2.1e+02 Score=23.56 Aligned_cols=71 Identities=13% Similarity=0.187 Sum_probs=45.8
Q ss_pred HHHHHHHhhhhhhhhhcHHHHHHHHHH---hhhHHHHHHHhhhccchhcccccccccccchhhhHHHHHHhHHHHhhhhh
Q 004412 655 ISLLNKQVGRYQSLQGKIDDICKRLHE---TGQKLMEVQSKIASGFVEFTEELDKFACFDKKRFADSLTTLFQEVQRGLE 731 (755)
Q Consensus 655 ~sll~Kqv~RYQsL~~KiDdLC~Rm~~---TgQKlme~qs~i~~~~~~~~~~~~~~~~~d~~R~~d~i~~lf~evQRgLE 731 (755)
+.-+..|++.++.|+..|+.--.++.. +|++|+.- +.. .+...-.+..-++.+..-+..|.....
T Consensus 35 ~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~------~~~------~~~~~~~i~~~l~~l~~rw~~L~~~~~ 102 (118)
T 3uul_A 35 VEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQ------GTL------SDEEEFEIQEQMTLLNARWEALRVESM 102 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCS------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCC------ChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888889999888888777754 99998751 111 011122345556677777777777776
Q ss_pred HHHHHH
Q 004412 732 VRIARI 737 (755)
Q Consensus 732 vriaRI 737 (755)
-|-.++
T Consensus 103 ~R~~~L 108 (118)
T 3uul_A 103 ERQSRL 108 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 50
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.11 E-value=5.8e+02 Score=25.20 Aligned_cols=67 Identities=30% Similarity=0.302 Sum_probs=40.3
Q ss_pred HHHHHhhHHHHhhHHHHH-HHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 004412 198 QEAQEHSNEIRKHKTAFI-ELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEESVSFAQKLSLEIVKMR 267 (755)
Q Consensus 198 rEaqehS~dl~Khk~a~l-El~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee~~~~~qkLs~El~klR 267 (755)
.|-|+.|.+|-..-++-| .+.+..++|...+++...+++..+..++. ..-+++..+..|-.||..+|
T Consensus 34 ~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~---~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 34 VEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH---QYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 456677767766666666 55556666777777777777776666652 22344444555555555555
No 51
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.92 E-value=58 Score=26.22 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHhhhhchhhHHHHH
Q 004412 435 LLSMEIESKRLQSHVEGLNHETSQLRHDNMKLEALLF 471 (755)
Q Consensus 435 llsmE~E~~rLrS~~e~L~~~lsq~~~~~~~lEall~ 471 (755)
+-.||.++..|.++-..|..+++.++.+...|..+|+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666665555543
No 52
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.75 E-value=9.2e+02 Score=27.41 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=7.6
Q ss_pred hhhhhhHHHHHHHHh
Q 004412 268 KDLDQKDKILSAMLR 282 (755)
Q Consensus 268 kd~e~KDkilSaMLr 282 (755)
++..+-|.-||..|+
T Consensus 416 ~~~s~~~~~ls~~me 430 (551)
T 2b5u_A 416 KEKSDADAALSSAME 430 (551)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhh
Confidence 333444445666665
No 53
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=21.53 E-value=30 Score=26.01 Aligned_cols=11 Identities=73% Similarity=1.002 Sum_probs=8.8
Q ss_pred hhHHHH---HHhhc
Q 004412 730 LEVRIA---RIIGD 740 (755)
Q Consensus 730 LEvria---RIIGD 740 (755)
-||||| |-|||
T Consensus 4 PEiwIAQELRRIGD 17 (33)
T 1pq1_B 4 PEIRIAQELRRIGD 17 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhH
Confidence 389998 67887
No 54
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.35 E-value=4.1e+02 Score=23.15 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 004412 188 IAEELRENAKQEAQEHSNEIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELD 243 (755)
Q Consensus 188 ~~~eLrE~akrEaqehS~dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~ 243 (755)
+.+-||-+++.....+.++|.--+.+--||...+..|+..+.+--++-+....+++
T Consensus 8 VeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~ 63 (78)
T 3iv1_A 8 VSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777788777777778888887777666655554444444443
No 55
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=20.46 E-value=2.7e+02 Score=22.82 Aligned_cols=71 Identities=10% Similarity=0.125 Sum_probs=45.4
Q ss_pred HHHHHHHhhhhhhhhhcHHHHHHHHHH---hhhHHHHHHHhhhccchhcccccccccccchhhhHHHHHHhHHHHhhhhh
Q 004412 655 ISLLNKQVGRYQSLQGKIDDICKRLHE---TGQKLMEVQSKIASGFVEFTEELDKFACFDKKRFADSLTTLFQEVQRGLE 731 (755)
Q Consensus 655 ~sll~Kqv~RYQsL~~KiDdLC~Rm~~---TgQKlme~qs~i~~~~~~~~~~~~~~~~~d~~R~~d~i~~lf~evQRgLE 731 (755)
+.-+..+.++++.|+..|+.--.++.. +|+.|+.- +.. .+...-.+..=++.+...+..|+....
T Consensus 35 ~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~------~~~------~~~~~~~i~~~l~~l~~rw~~L~~~~~ 102 (119)
T 3uun_A 35 VEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGT------GKL------SEDEETEVQEQMNLLNSRWECLRVASM 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TCS------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc------CCC------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888877766644 99999752 111 011122345556777777777777776
Q ss_pred HHHHHH
Q 004412 732 VRIARI 737 (755)
Q Consensus 732 vriaRI 737 (755)
-|-.++
T Consensus 103 ~R~~~L 108 (119)
T 3uun_A 103 EKQSNL 108 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.00 E-value=7.6e+02 Score=25.74 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh-------------------hHHHHHHHHHHHHHH
Q 004412 206 EIRKHKTAFIELVSNQRQLEAELGRAHRQVEARKEELDLVLEQKEE-------------------SVSFAQKLSLEIVKM 266 (755)
Q Consensus 206 dl~Khk~a~lEl~s~QrqlEaeL~rA~~~l~a~~~EL~sv~e~kee-------------------~~~~~qkLs~El~kl 266 (755)
.+.+-+...+-+...+.++|..+.+..+.++....++.....+.+. ...|.+++-.|..++
T Consensus 354 ~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (487)
T 3oja_A 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNA 433 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcc
Q ss_pred hhhhhhhHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHh
Q 004412 267 RKDLDQKDKILSAMLRKSKSDTAEKQMLLKEVKISKAKRRQA 308 (755)
Q Consensus 267 Rkd~e~KDkilSaMLrkSklD~~EKemLlrEvk~~kAkrK~A 308 (755)
+++.+..-.-+..+.+.-.--..+-+.+-..+.-+.++=+-|
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Done!