Query 004412
Match_columns 755
No_of_seqs 35 out of 37
Neff 2.8
Searched_HMMs 13730
Date Tue Mar 26 00:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004412.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004412hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l2pa_ f.23.21.1 (A:) F1F0 AT 59.0 24 0.0017 27.3 8.4 54 182-235 4-59 (61)
2 d2elba1 a.238.1.1 (A:6-273) DC 41.8 69 0.005 28.5 10.0 60 642-702 6-65 (268)
3 d1ivsa1 a.2.7.3 (A:797-862) Va 24.3 1.2E+02 0.0085 22.6 7.1 59 120-189 4-62 (66)
4 d1hcia4 a.7.1.1 (A:633-746) al 22.9 92 0.0067 24.3 6.6 65 658-737 39-106 (114)
5 d1nkpa_ a.38.1.1 (A:) Myc prot 20.6 69 0.005 25.0 5.2 39 27-67 23-61 (88)
6 d1i4da_ a.238.1.2 (A:) Arfapti 20.0 1.6E+02 0.011 24.2 7.8 60 670-734 23-82 (200)
7 d1nkpb_ a.38.1.1 (B:) Max prot 19.3 45 0.0032 25.9 3.7 39 27-68 19-57 (83)
8 d1u5pa1 a.7.1.1 (A:1662-1771) 19.1 1.8E+02 0.013 22.0 7.4 66 656-736 35-103 (110)
9 d1uklc_ a.38.1.1 (C:) SREBP-2 14.6 1.6E+02 0.012 21.6 5.9 48 28-96 7-55 (61)
10 d1c4ka3 d.125.1.1 (A:570-730) 14.2 34 0.0025 30.9 2.0 39 653-693 6-46 (161)
No 1
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=59.02 E-value=24 Score=27.32 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004412 182 ISIAEKIAEELRENAKQEAQEHSNEIR--KHKTAFIELVSNQRQLEAELGRAHRQV 235 (755)
Q Consensus 182 La~aEk~~~eLrE~akrEaqehS~dl~--Khk~a~lEl~s~QrqlEaeL~rA~~~l 235 (755)
|..+..-+.++.+.|+..+.....+.. -+.++-==+..++.++|.|.++|...|
T Consensus 4 L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eL 59 (61)
T d1l2pa_ 4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444333332 222333346778888999998888765
No 2
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.78 E-value=69 Score=28.53 Aligned_cols=60 Identities=12% Similarity=0.208 Sum_probs=47.2
Q ss_pred cCCccchhhHHHHHHHHHHHhhhhhhhhhcHHHHHHHHHHhhhHHHHHHHhhhccchhccc
Q 004412 642 ESNDDGIKGLLSLISLLNKQVGRYQSLQGKIDDICKRLHETGQKLMEVQSKIASGFVEFTE 702 (755)
Q Consensus 642 ~~~~~~~r~~~~~~sll~Kqv~RYQsL~~KiDdLC~Rm~~TgQKlme~qs~i~~~~~~~~~ 702 (755)
|.-.|+|. |-.-+..+..+|.....--.|+-..|+.|++.|..+..-+...+.++..++.
T Consensus 6 E~~~DSP~-FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~L~~~~~ 65 (268)
T d2elba1 6 ETLEDSPQ-TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEK 65 (268)
T ss_dssp GTTTTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred HHHhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445564 7778888899999988888899999999999998888888887777665443
No 3
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=24.34 E-value=1.2e+02 Score=22.60 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004412 120 SERKQLRQQIGALINELRILDKKKDESISELNEKLKDMELLVRSKDRVLEEDEQKRKELEEKISIAEKIA 189 (755)
Q Consensus 120 ~ErKrLr~qI~al~~E~~~le~~k~~~i~EL~~kLkE~E~l~~~kdka~Eee~~k~keleekLa~aEk~~ 189 (755)
.|+.||..++..+.+++. -++.+|+-.-|+--.-...+++++.+..++...+...+..-
T Consensus 4 ~E~~RL~K~l~kl~~~i~-----------~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l 62 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAE-----------RSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------HHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566555555555544 46677777777775555667777777777777777666554
No 4
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.87 E-value=92 Score=24.32 Aligned_cols=65 Identities=9% Similarity=0.107 Sum_probs=46.6
Q ss_pred HHHHhhhhhhhhhcHHHHHHHHHH---hhhHHHHHHHhhhccchhcccccccccccchhhhHHHHHHhHHHHhhhhhHHH
Q 004412 658 LNKQVGRYQSLQGKIDDICKRLHE---TGQKLMEVQSKIASGFVEFTEELDKFACFDKKRFADSLTTLFQEVQRGLEVRI 734 (755)
Q Consensus 658 l~Kqv~RYQsL~~KiDdLC~Rm~~---TgQKlme~qs~i~~~~~~~~~~~~~~~~~d~~R~~d~i~~lf~evQRgLEvri 734 (755)
+..+.++++.|+.-|+....+|.. .|++|++. ++. ..-.+.--++.|...+..++..+-=|.
T Consensus 39 ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~~------~~~---------~~~~i~~~~~~L~~~W~~L~~~~~~R~ 103 (114)
T d1hcia4 39 LEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEA------LVF---------DNKHTNYTMEHIRVGWELLLTTIARTI 103 (114)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCC---------CCTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCc---------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778889999999988888865 89999872 111 122456667888888888888776665
Q ss_pred HHH
Q 004412 735 ARI 737 (755)
Q Consensus 735 aRI 737 (755)
+.|
T Consensus 104 ~~L 106 (114)
T d1hcia4 104 NEV 106 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 5
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.59 E-value=69 Score=25.00 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=23.9
Q ss_pred HHHHHhhhccccCCCCchhhHHHHHHHHhHHHHHHHHHHHH
Q 004412 27 CAFFALRMLSVAETKDDKWSELHDKMLRGSAQLLGLLVWRV 67 (755)
Q Consensus 27 ~Af~AL~~L~~~~~~d~k~~~~lq~MLkgs~~~LglLa~na 67 (755)
=+|..|+.|.++..+..+++. -.+|+.|.+|+..|.-..
T Consensus 23 ~~f~~Lr~llP~~~~~~k~sK--~~iL~~A~~yI~~L~~~~ 61 (88)
T d1nkpa_ 23 RSFFALRDQIPELENNEKAPK--VVILKKATAYILSVQAEE 61 (88)
T ss_dssp HHHHHHHTTCGGGTTCTTCCH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCccCH--HHHHHHHHHHHHHHHHHH
Confidence 357778877433333345553 346777999988776543
No 6
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.05 E-value=1.6e+02 Score=24.17 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=38.1
Q ss_pred hcHHHHHHHHHHhhhHHHHHHHhhhccchhcccccccccccchhhhHHHHHHhHHHHhhhhhHHH
Q 004412 670 GKIDDICKRLHETGQKLMEVQSKIASGFVEFTEELDKFACFDKKRFADSLTTLFQEVQRGLEVRI 734 (755)
Q Consensus 670 ~KiDdLC~Rm~~TgQKlme~qs~i~~~~~~~~~~~~~~~~~d~~R~~d~i~~lf~evQRgLEvri 734 (755)
.++-..|+.|..+++.+...|..++.+|..+++.- -+....+..+...++.+....+..+
T Consensus 23 ~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~ 82 (200)
T d1i4da_ 23 ESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKS-----PELQEEFGYNAETQKLLCKNGETLL 82 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777899999999999999987654321 1234455555555665555544443
No 7
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.30 E-value=45 Score=25.90 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=23.6
Q ss_pred HHHHHhhhccccCCCCchhhHHHHHHHHhHHHHHHHHHHHHh
Q 004412 27 CAFFALRMLSVAETKDDKWSELHDKMLRGSAQLLGLLVWRVQ 68 (755)
Q Consensus 27 ~Af~AL~~L~~~~~~d~k~~~~lq~MLkgs~~~LglLa~naq 68 (755)
=+|..|+.|-++ .++.+++. -.+|+.|..|++.|-...+
T Consensus 19 ~~f~~L~~llP~-~~~~k~sK--~~iL~~A~~yI~~L~~~~~ 57 (83)
T d1nkpb_ 19 DSFHSLRDSVPS-LQGEKASR--AQILDKATEYIQYMRRKNH 57 (83)
T ss_dssp HHHHHHHTTSGG-GTTSCCCH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCCCCCH--HHHHHHHHHHHHHHHHHHH
Confidence 467888888321 33334443 2467778998887655433
No 8
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=19.15 E-value=1.8e+02 Score=21.97 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=45.3
Q ss_pred HHHHHHhhhhhhhhhcHHHHHHHHHH---hhhHHHHHHHhhhccchhcccccccccccchhhhHHHHHHhHHHHhhhhhH
Q 004412 656 SLLNKQVGRYQSLQGKIDDICKRLHE---TGQKLMEVQSKIASGFVEFTEELDKFACFDKKRFADSLTTLFQEVQRGLEV 732 (755)
Q Consensus 656 sll~Kqv~RYQsL~~KiDdLC~Rm~~---TgQKlme~qs~i~~~~~~~~~~~~~~~~~d~~R~~d~i~~lf~evQRgLEv 732 (755)
.-+..+.++|+.+...|+-.+.++.. +|+.|+. .+ ....-.+..-.+.|...+.+|+..+.-
T Consensus 35 ~~~~~~~~~h~~~~~ei~~~~~~i~~l~~~~~~L~~------~~---------~~~~~~i~~~~~~l~~~w~~l~~~~~~ 99 (110)
T d1u5pa1 35 ASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMT------SS---------AFDTSQVKDKRETINGRFQRIKSMAAA 99 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------CS---------SSCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh------cC---------CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556667788888888888877754 8888874 11 122334566777888888888888777
Q ss_pred HHHH
Q 004412 733 RIAR 736 (755)
Q Consensus 733 riaR 736 (755)
|-.+
T Consensus 100 R~~~ 103 (110)
T d1u5pa1 100 RRAK 103 (110)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 9
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.64 E-value=1.6e+02 Score=21.55 Aligned_cols=48 Identities=23% Similarity=0.167 Sum_probs=28.4
Q ss_pred HHHHhhhc-cccCCCCchhhHHHHHHHHhHHHHHHHHHHHHhhccccchhhhHHhHHHHHHHHHHHHHHh
Q 004412 28 AFFALRML-SVAETKDDKWSELHDKMLRGSAQLLGLLVWRVQRDGANGEKCKLSQKLDAAEREIEELKKL 96 (755)
Q Consensus 28 Af~AL~~L-~~~~~~d~k~~~~lq~MLkgs~~~LglLa~naq~e~~~g~~~~L~~kL~~AE~ei~eLKkr 96 (755)
.|.+|+.| |++.....|| .||..|.+|+.-| .......+.|+..|+..
T Consensus 7 ~f~~L~~lvP~~~~K~~Ka-----~iL~~Ai~YI~~L----------------q~~~~~L~~e~~~L~~~ 55 (61)
T d1uklc_ 7 KIIELKDLVMGTDAKMHKS-----GVLRKAIDYIKYL----------------QQVNHKLRQENMVLKLA 55 (61)
T ss_dssp HHHHHHHHHSCSSCCCCTT-----THHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcccHH-----HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
Confidence 57788888 6543333344 3667788876544 34444555666666554
No 10
>d1c4ka3 d.125.1.1 (A:570-730) Ornithine decarboxylase C-terminal domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=14.16 E-value=34 Score=30.89 Aligned_cols=39 Identities=23% Similarity=0.466 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhhhhhhcHHHHHHHHHHhh--hHHHHHHHhh
Q 004412 653 SLISLLNKQVGRYQSLQGKIDDICKRLHETG--QKLMEVQSKI 693 (755)
Q Consensus 653 ~~~sll~Kqv~RYQsL~~KiDdLC~Rm~~Tg--QKlme~qs~i 693 (755)
-||+|....=.||.-+ -|-|||..||+-= -.+..+|.+.
T Consensus 6 vLP~l~~~~p~rY~~~--~LrdLc~~mH~~~~~~~~~~l~~~~ 46 (161)
T d1c4ka3 6 VLPSIYAANEERYNGY--TIRELCQELHDFYKNNNTFTYQKRL 46 (161)
T ss_dssp HCHHHHTTSTTTSTTC--BHHHHHHHHHHHHHTTTHHHHHHHT
T ss_pred HCHHHHHhChHhHcCC--CHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4788888888999987 6899999999932 2256677664
Done!