BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004413
(755 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 120/249 (48%), Gaps = 31/249 (12%)
Query: 2 LLSVAHNVFSGSVPRELGNLK-ELTVLSFGNNNFSGTLPPEIGNLAK--LEQLYLNSWGA 58
+L ++ N FSG +P L NL L L +NNFSG + P + K L++LYL + G
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 59 GGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXX 118
G+IP T + + +L S +G IP +G+ +KL+ L+ N +G IP
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE----- 458
Query: 119 XXXXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNL 178
+M +K L L L +TG IPSG+ NL + LS N L
Sbjct: 459 -------------------LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 179 TGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFPSWVTSNL 236
TG+IP+ + + +L L L NNS SG +P + +L +DL+ N +G P+ +
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-- 557
Query: 237 QMNLVANNF 245
Q +A NF
Sbjct: 558 QSGKIAANF 566
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 114/229 (49%), Gaps = 30/229 (13%)
Query: 8 NVFSGSVPRE-LGNLKELTVLSFGNNNFSGTLPPEIGNL-AKLEQLYLNSWGAGGEI-PS 64
N FSG +P + L ++ L VL N FSG LP + NL A L L L+S G I P+
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 65 TYAKLRN-MQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXX 123
+N +Q L+ + FTGKIP + N ++L SL N G IP
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP------------ 432
Query: 124 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183
SSL SL L DL L ++ G IP + ++ L+TL L FN+LTG+IP
Sbjct: 433 ---------SSLG---SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Query: 184 RTLFNIGSLNYLFLGNNSLSGTLP--TQKSENLQNIDLSYNHLSGPFPS 230
L N +LN++ L NN L+G +P + ENL + LS N SG P+
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 112/232 (48%), Gaps = 10/232 (4%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+S+++N +G +P+ +G L+ L +L NN+FSG +P E+G+ L L LN+ G I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN--SFQGPIPXXXXXXXXX 120
P+ K Q+ + GK +I N K GN FQG
Sbjct: 552 PAAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 121 XXXRI-SDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179
I S +Y +S F + ++ L + +++G IP IG + L L+L N+++
Sbjct: 608 NPCNITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 180 GQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE--NLQNIDLSYNHLSGPFP 229
G IP + ++ LN L L +N L G +P S L IDLS N+LSGP P
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 33/239 (13%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L ++ N SG R + EL +L+ +N F G +PP +
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---------------------L 263
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPI-PXXXXXXXXX 120
P L+++Q L ++ FTG+IPDF+ G L L GN F G + P
Sbjct: 264 P-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 121 XXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQ-NLQTLDLSFNNLT 179
S+ ++ +D ++ ++ L L L +G +P + L +L TLDLS NN +
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 180 GQIPRTLFN--IGSLNYLFLGNNSLSGTLPTQKS--ENLQNIDLSYNHLSGPFPSWVTS 234
G I L +L L+L NN +G +P S L ++ LS+N+LSG PS + S
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 437
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGG 60
M L +++N+ SG +P+E+G++ L +L+ G+N+ SG++P E+G+L L L L+S G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 61 EIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN 104
IP + L + + S+ +G IP+ +G + +F N
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNN 734
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 95/232 (40%), Gaps = 37/232 (15%)
Query: 23 ELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPF 82
EL L+ N SG + ++ LE L ++S IP +Q L S
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 232
Query: 83 TGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMSLK 142
+G I T+LK L N F GPIP + LK
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPP--------------------------LPLK 266
Query: 143 NLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNS 201
+L LSL TG IP + G L LDLS N+ G +P + L L L +N+
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 202 LSGTLPTQ---KSENLQNIDLSYNHLSGPFPSWVT----SNLQMNLVANNFT 246
SG LP K L+ +DLS+N SG P +T S L ++L +NNF+
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 156 GSIPSGIGELQNLQTLDLSFNNLTGQ--IPRTLFN-IGSLNYLFLGNNSLSGTLPTQKSE 212
G + G+ +L +L+ LDLS N+++G + L + G L +L + N +SG + +
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 197
Query: 213 NLQNIDLSYNHLSGPFP 229
NL+ +D+S N+ S P
Sbjct: 198 NLEFLDVSSNNFSTGIP 214
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 120/249 (48%), Gaps = 31/249 (12%)
Query: 2 LLSVAHNVFSGSVPRELGNLK-ELTVLSFGNNNFSGTLPPEIGNLAK--LEQLYLNSWGA 58
+L ++ N FSG +P L NL L L +NNFSG + P + K L++LYL + G
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 59 GGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXX 118
G+IP T + + +L S +G IP +G+ +KL+ L+ N +G IP
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE----- 461
Query: 119 XXXXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNL 178
+M +K L L L +TG IPSG+ NL + LS N L
Sbjct: 462 -------------------LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 179 TGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFPSWVTSNL 236
TG+IP+ + + +L L L NNS SG +P + +L +DL+ N +G P+ +
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-- 560
Query: 237 QMNLVANNF 245
Q +A NF
Sbjct: 561 QSGKIAANF 569
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 114/229 (49%), Gaps = 30/229 (13%)
Query: 8 NVFSGSVPRE-LGNLKELTVLSFGNNNFSGTLPPEIGNL-AKLEQLYLNSWGAGGEI-PS 64
N FSG +P + L ++ L VL N FSG LP + NL A L L L+S G I P+
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 65 TYAKLRN-MQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXX 123
+N +Q L+ + FTGKIP + N ++L SL N G IP
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP------------ 435
Query: 124 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183
SSL SL L DL L ++ G IP + ++ L+TL L FN+LTG+IP
Sbjct: 436 ---------SSLG---SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Query: 184 RTLFNIGSLNYLFLGNNSLSGTLP--TQKSENLQNIDLSYNHLSGPFPS 230
L N +LN++ L NN L+G +P + ENL + LS N SG P+
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 112/232 (48%), Gaps = 10/232 (4%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+S+++N +G +P+ +G L+ L +L NN+FSG +P E+G+ L L LN+ G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN--SFQGPIPXXXXXXXXX 120
P+ K Q+ + GK +I N K GN FQG
Sbjct: 555 PAAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 121 XXXRI-SDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179
I S +Y +S F + ++ L + +++G IP IG + L L+L N+++
Sbjct: 611 NPCNITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 180 GQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE--NLQNIDLSYNHLSGPFP 229
G IP + ++ LN L L +N L G +P S L IDLS N+LSGP P
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 33/239 (13%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L ++ N SG R + EL +L+ +N F G +PP +
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---------------------L 266
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPI-PXXXXXXXXX 120
P L+++Q L ++ FTG+IPDF+ G L L GN F G + P
Sbjct: 267 P-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 121 XXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQ-NLQTLDLSFNNLT 179
S+ ++ +D ++ ++ L L L +G +P + L +L TLDLS NN +
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 180 GQIPRTLFN--IGSLNYLFLGNNSLSGTLPTQKS--ENLQNIDLSYNHLSGPFPSWVTS 234
G I L +L L+L NN +G +P S L ++ LS+N+LSG PS + S
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGG 60
M L +++N+ SG +P+E+G++ L +L+ G+N+ SG++P E+G+L L L L+S G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 61 EIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN 104
IP + L + + S+ +G IP+ +G + +F N
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNN 737
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 95/232 (40%), Gaps = 37/232 (15%)
Query: 23 ELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPF 82
EL L+ N SG + ++ LE L ++S IP +Q L S
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235
Query: 83 TGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMSLK 142
+G I T+LK L N F GPIP + LK
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPP--------------------------LPLK 269
Query: 143 NLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNS 201
+L LSL TG IP + G L LDLS N+ G +P + L L L +N+
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 202 LSGTLPTQ---KSENLQNIDLSYNHLSGPFPSWVT----SNLQMNLVANNFT 246
SG LP K L+ +DLS+N SG P +T S L ++L +NNF+
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 156 GSIPSGIGELQNLQTLDLSFNNLTGQ--IPRTLFN-IGSLNYLFLGNNSLSGTLPTQKSE 212
G + G+ +L +L+ LDLS N+++G + L + G L +L + N +SG + +
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 213 NLQNIDLSYNHLSGPFP 229
NL+ +D+S N+ S P
Sbjct: 201 NLEFLDVSSNNFSTGIP 217
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 68/116 (58%), Gaps = 15/116 (12%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGR--------ANSDNSLDMEKIYLLEWAW 621
G++APEY G +EK DVF +GV LE+I+G+ AN D+ + LL+W
Sbjct: 208 GHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD------VMLLDWVK 261
Query: 622 NLHENNQSLGLVDPTLT-EFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGD 676
L + + LVD L + D+E ++I VALLCTQ+SPM RP MS VV ML GD
Sbjct: 262 GLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 317
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 510 RRKKDND---------DEEVLVGIDSKPNTFSYAELRSATQDFDPSNKLGEGGYGPVYK 559
RRKK D D EV +G + FS EL+ A+ +F N LG GG+G VYK
Sbjct: 1 RRKKPQDHFFDVPAEEDPEVHLG---QLKRFSLRELQVASDNFSNKNILGRGGFGKVYK 56
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 68/116 (58%), Gaps = 15/116 (12%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGR--------ANSDNSLDMEKIYLLEWAW 621
G++APEY G +EK DVF +GV LE+I+G+ AN D+ + LL+W
Sbjct: 200 GHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD------VMLLDWVK 253
Query: 622 NLHENNQSLGLVDPTLT-EFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGD 676
L + + LVD L + D+E ++I VALLCTQ+SPM RP MS VV ML GD
Sbjct: 254 GLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 515 NDDEEVLVGIDSKPNTFSYAELRSATQDFDPSNKLGEGGYGPVYK 559
+D EV +G + FS EL+ A+ +F N LG GG+G VYK
Sbjct: 7 EEDPEVHLG---QLKRFSLRELQVASDNFXNKNILGRGGFGKVYK 48
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 86/187 (45%), Gaps = 11/187 (5%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L + H SG++P L +K L L F N SGTLPP I +L L + + G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 63 PSTYAKLRNMQT-LWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXX 121
P +Y + T + S TGKIP N L + N +G
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG-----DASVLFGS 219
Query: 122 XXRISDIYNVSSSLDFVMSL----KNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNN 177
I+ +SL F + KNL L LRN I G++P G+ +L+ L +L++SFNN
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 178 LTGQIPR 184
L G+IP+
Sbjct: 280 LCGEIPQ 286
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 4/219 (1%)
Query: 14 VPRELGNLKELTVLSFGN-NNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
+P L NL L L G NN G +PP I L +L LY+ G IP ++++ +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVS 132
TL S +G +P I + L + F GN G IP ++
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 133 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSL 192
+ + NL + L ++ G G +N Q + L+ N+L + + + +L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNL 246
Query: 193 NYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHLSGPFP 229
N L L NN + GTLP + + L ++++S+N+L G P
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
GY+ PEY ++G LTEK+DV+SFGV E++ R+ SL E + L EWA H N Q
Sbjct: 206 GYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQL 265
Query: 630 LGLVDPTLTEFNDKEALRVIG-VALLCTQASPMMRPPMSRVV 670
+VDP L + E+LR G A+ C S RP M V+
Sbjct: 266 EQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVL 307
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
GY+ PEY ++G LTEK+DV+SFGV E++ R+ SL E + L EWA H N Q
Sbjct: 206 GYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQL 265
Query: 630 LGLVDPTLTEFNDKEALRVIG-VALLCTQASPMMRPPMSRVV 670
+VDP L + E+LR G A+ C S RP M V+
Sbjct: 266 EQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVL 307
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
Y+APE A+RG +T K+D++SFGV LEII+G D + ++ L E
Sbjct: 200 AYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTI 257
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
+D + + + + VA C RP + +V +L
Sbjct: 258 EDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 301
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 6/41 (14%)
Query: 525 DSKPNTFSYAELRSATQDFDPS------NKLGEGGYGPVYK 559
D++ ++FS+ EL++ T +FD NK+GEGG+G VYK
Sbjct: 9 DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 49
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
Y+APE A+RG +T K+D++SFGV LEII+G D + ++ L E
Sbjct: 200 AYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTI 257
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
+D + + + + VA C RP + +V +L
Sbjct: 258 EDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 301
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 6/41 (14%)
Query: 525 DSKPNTFSYAELRSATQDFDPS------NKLGEGGYGPVYK 559
D++ ++FS+ EL++ T +FD NK+GEGG+G VYK
Sbjct: 9 DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 49
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
Y+APE A+RG +T K+D++SFGV LEII+G D + ++ L E
Sbjct: 194 AYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTI 251
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
+D + + + + VA C RP + +V +L
Sbjct: 252 EDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 295
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 6/41 (14%)
Query: 525 DSKPNTFSYAELRSATQDFDPS------NKLGEGGYGPVYK 559
D++ ++FS+ EL++ T +FD NK+GEGG+G VYK
Sbjct: 3 DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 43
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 39/245 (15%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77
L L L LSFGN L P + NL LE+L ++S S AKL N+++L A
Sbjct: 151 LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 205
Query: 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDF 137
++ + P +G T L L GN ++ DI ++S
Sbjct: 206 TNNQISDITP--LGILTNLDELSLNGN-------------------QLKDIGTLAS---- 240
Query: 138 VMSLKNLTDLSLRNALITGSIP-SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLF 196
L NLTDL L N I+ P SG+ +L L+ L N ++ P L + +L L
Sbjct: 241 ---LTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISP--LAGLTALTNLE 292
Query: 197 LGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFP 256
L N L P +NL + L +N++S P + LQ ANN D S+++
Sbjct: 293 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLT 352
Query: 257 GLHCL 261
++ L
Sbjct: 353 NINWL 357
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 220
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 119
Query: 221 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR 263
N ++ P +NL ++ L +N S+IS GL LQ+
Sbjct: 120 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQ 159
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 105/245 (42%), Gaps = 38/245 (15%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77
L L L LSF +N + P + NL LE+L ++S S AKL N+++L A
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 202
Query: 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDF 137
++ + P +G T L L GN ++ DI ++S
Sbjct: 203 TNNQISDITP--LGILTNLDELSLNGN-------------------QLKDIGTLAS---- 237
Query: 138 VMSLKNLTDLSLRNALITGSIP-SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLF 196
L NLTDL L N I+ P SG+ +L L+ L N ++ P L + +L L
Sbjct: 238 ---LTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISP--LAGLTALTNLE 289
Query: 197 LGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFP 256
L N L P +NL + L +N++S P + LQ +NN D S+++
Sbjct: 290 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLT 349
Query: 257 GLHCL 261
++ L
Sbjct: 350 NINWL 354
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 220
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 221 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR-NFPCNR 269
N ++ P +NL ++ L +N S+IS GL LQ+ +F N+
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLSFSSNQ 162
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
Y APE A+RG +T K+D++SFGV LEII+G D + ++ L E
Sbjct: 191 AYXAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTI 248
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
+D + + VA C RP + +V +L
Sbjct: 249 EDYIDKKXNDADSTSVEAXYSVASQCLHEKKNKRPDIKKVQQLL 292
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 6/37 (16%)
Query: 529 NTFSYAELRSATQDFDPS------NKLGEGGYGPVYK 559
++FS+ EL++ T +FD NK GEGG+G VYK
Sbjct: 4 HSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYK 40
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 105/245 (42%), Gaps = 39/245 (15%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77
L L L L+FGN L P + NL LE+L ++S S AKL N+++L A
Sbjct: 147 LSGLTSLQQLNFGNQ--VTDLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 201
Query: 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDF 137
++ + P +G T L L GN ++ DI ++S
Sbjct: 202 TNNQISDITP--LGILTNLDELSLNGN-------------------QLKDIGTLAS---- 236
Query: 138 VMSLKNLTDLSLRNALITGSIP-SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLF 196
L NLTDL L N I+ P SG+ +L L+ L N ++ P L + +L L
Sbjct: 237 ---LTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISP--LAGLTALTNLE 288
Query: 197 LGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFP 256
L N L P +NL + L +N++S P + LQ +NN D S+++
Sbjct: 289 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLT 348
Query: 257 GLHCL 261
++ L
Sbjct: 349 NINWL 353
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 220
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 221 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR-NF 265
N ++ P +NL ++ L +N S+IS GL LQ+ NF
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLNF 158
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 22/208 (10%)
Query: 3 LSVAHNVFSG-SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
L ++ N S SV +L NL+ L NN S P +G L L++L LN G +
Sbjct: 177 LDISSNKVSDISVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLN----GNQ 227
Query: 62 IPS--TYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXX 119
+ T A L N+ L ++ + P + TKL L+ N P
Sbjct: 228 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 285
Query: 120 XXXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179
+ + ++S + +LKNLT L+L I+ P + L LQ L S N ++
Sbjct: 286 NLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS 339
Query: 180 GQIPRTLFNIGSLNYLFLGNNSLSGTLP 207
+L N+ ++N+L G+N +S P
Sbjct: 340 D--VSSLANLTNINWLSAGHNQISDLTP 365
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 83/214 (38%), Gaps = 30/214 (14%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
LL + +N + + NLK L L NN S P L KLE+LYL S E
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL-SKNQLKE 114
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGN-----------WTKLKSLRFQGNSFQGPI 110
+P K +Q L + T K+ + N LKS + +FQG
Sbjct: 115 LPEKMPK--TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-- 169
Query: 111 PXXXXXXXXXXXXRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNL 168
RI+D I + L +LT+L L IT + + L NL
Sbjct: 170 ------MKKLSYIRIADTNITTIPQGLP-----PSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 169 QTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSL 202
L LSFN+++ +L N L L L NN L
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 83/214 (38%), Gaps = 30/214 (14%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
LL + +N + + NLK L L NN S P L KLE+LYL S E
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL-SKNQLKE 114
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGN-----------WTKLKSLRFQGNSFQGPI 110
+P K +Q L + T K+ + N LKS + +FQG
Sbjct: 115 LPEKMPK--TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-- 169
Query: 111 PXXXXXXXXXXXXRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNL 168
RI+D I + L +LT+L L IT + + L NL
Sbjct: 170 ------MKKLSYIRIADTNITTIPQGLP-----PSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 169 QTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSL 202
L LSFN+++ +L N L L L NN L
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 242
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 243 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL 290
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 195 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 239
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 240 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL 287
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 197 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 241
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 242 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL 289
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 242
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 243 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL 290
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 242
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 243 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL 290
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 242
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 243 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLEIVNLLKDDL 290
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 199 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 243
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 244 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLEIVNLLKDDL 291
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 242
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 243 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLEIVNLLKDDL 290
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 30/180 (16%)
Query: 27 LSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKI 86
L +N S L KL LYLN + +L+N++TLW +D
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 87 PDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMSLKNLTD 146
L LR N + P R+ D SL LT
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPP------------RVFD------------SLTKLTY 137
Query: 147 LSL-RNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLFN-IGSLNYLFLGNNSLS 203
LSL N L S+P G+ +L +L+ L L +NN ++P F+ + L L L NN L
Sbjct: 138 LSLGYNEL--QSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 13/96 (13%)
Query: 138 VMSLKNLTDLSLRNALITG----SIPSGI-GELQNLQTLDLSFNNLTGQIPRTLFN-IGS 191
+ +LK LT+L+ ++TG S+P+G+ +L NL+ L L N L +P +F+ + +
Sbjct: 78 ISALKELTNLTY--LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTN 134
Query: 192 LNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHL 224
L YL L +N L +LP K NL +DLSYN L
Sbjct: 135 LTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL 169
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 556 PVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSD 606
P KK ++ N + ++APE EK DVFSFG+ EII GR N+D
Sbjct: 174 PDRKKRYTVVGNPY-WMAPEMINGRSYDEKVDVFSFGIVLCEII-GRVNAD 222
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 571 YLAPEY--AMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ 628
++APE +RG+ KAD++SFG+ A+E+ +G A M+ + L L +
Sbjct: 187 WMAPEVMEQVRGY-DFKADIWSFGITAIELATGAAPYHKYPPMKVLML-----TLQNDPP 240
Query: 629 SLGLVDPTLTEFNDKEALRVIGVAL-----LCTQASPMMRPPMSRVV 670
SL T DKE L+ G + LC Q P RP + ++
Sbjct: 241 SLE------TGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELL 281
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 571 YLAPEY--AMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ 628
++APE +RG+ KAD++SFG+ A+E+ +G A M+ + L L +
Sbjct: 192 WMAPEVMEQVRGY-DFKADIWSFGITAIELATGAAPYHKYPPMKVLML-----TLQNDPP 245
Query: 629 SLGLVDPTLTEFNDKEALRVIGVAL-----LCTQASPMMRPPMSRVV 670
SL T DKE L+ G + LC Q P RP + ++
Sbjct: 246 SLE------TGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELL 286
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 548 KLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN 604
KL + G TQ+ + F G ++APE + KAD++S G+ A+E+ G
Sbjct: 160 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPP 219
Query: 605 SDNSLDMEKIYLL 617
+ + M ++L+
Sbjct: 220 NSDMHPMRVLFLI 232
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 128 IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF 187
I+N+S++ + LT L L +T +P+ I L NL+ LDLS N LT +P L
Sbjct: 236 IFNISAN---IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELG 290
Query: 188 NIGSLNYLFLGNNSLSGTLP 207
+ L Y + +N ++ TLP
Sbjct: 291 SCFQLKYFYFFDNMVT-TLP 309
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQL 51
+L ++HN + S+P ELG+ +L F +N + TLP E GNL L+ L
Sbjct: 274 VLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL 321
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGG 60
++L+++ N+ +GSV R L ++ VL NN ++P ++ +L L++L + S
Sbjct: 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKS 487
Query: 61 EIPSTYAKLRNMQTLWASDAPFTGKIP--DFIGNW 93
+ +L ++Q +W D P+ P ++ W
Sbjct: 488 VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 522
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFN-IGSLNYLFLGNNSLSGTLP 207
SIP + LQ LQ L+++ N L +P +F+ + SL Y++L +N T P
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 543 FDPSNKLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEII 599
D S KL + G+ Q S G ++APE R K D++S G+ A+E+I
Sbjct: 151 MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 210
Query: 600 SGRANSDNSLDMEKIYLL 617
G N + +YL+
Sbjct: 211 EGEPPYLNENPLRALYLI 228
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 543 FDPSNKLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEII 599
D S KL + G+ Q S G ++APE R K D++S G+ A+E+I
Sbjct: 151 MDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 210
Query: 600 SGRANSDNSLDMEKIYLL 617
G N + +YL+
Sbjct: 211 EGEPPYLNENPLRALYLI 228
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 543 FDPSNKLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEII 599
D S KL + G+ Q S G ++APE R K D++S G+ A+E+I
Sbjct: 152 MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 211
Query: 600 SGRANSDNSLDMEKIYLL 617
G N + +YL+
Sbjct: 212 EGEPPYLNENPLRALYLI 229
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGN---NSLSGTLPTQKSEN 213
SIPSG+ +++LDLSFN +T L +L L L + N++ G +
Sbjct: 45 SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGS 101
Query: 214 LQNIDLSYNHLSGPFPSW---VTSNLQMNLVANNFTFDRSNISVFPGLHCLQ 262
L+++DLS NHLS SW ++S +NL+ N + S+FP L LQ
Sbjct: 102 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQ 152
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 543 FDPSNKLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEII 599
D S KL + G+ Q S G ++APE R K D++S G+ A+E+I
Sbjct: 151 MDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 210
Query: 600 SGRANSDNSLDMEKIYLL 617
G N + +YL+
Sbjct: 211 EGEPPYLNENPLRALYLI 228
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 543 FDPSNKLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEII 599
D S KL + G+ Q S G ++APE R K D++S G+ A+E+I
Sbjct: 152 MDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 211
Query: 600 SGRANSDNSLDMEKIYLL 617
G N + +YL+
Sbjct: 212 EGEPPYLNENPLRALYLI 229
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGN---NSLSGTLPTQKSEN 213
SIPSG+ +++LDLSFN +T L +L L L + N++ G +
Sbjct: 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGS 75
Query: 214 LQNIDLSYNHLSGPFPSW---VTSNLQMNLVANNFTFDRSNISVFPGLHCLQ 262
L+++DLS NHLS SW ++S +NL+ N + S+FP L LQ
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQ 126
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 70/197 (35%), Gaps = 26/197 (13%)
Query: 22 KELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI-PSTYAKLRNMQTLWASDA 80
+ LT+L +N + LA LEQL L+ + P+T+ L + TL
Sbjct: 55 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 114
Query: 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMS 140
P L+ L Q N+ Q +P D
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNALQA-LPD-----------------------DTFRD 150
Query: 141 LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN 200
L NLT L L I+ L +L L L N + P ++G L L+L N
Sbjct: 151 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 210
Query: 201 SLSGTLPTQKSENLQNI 217
+LS LPT+ L+ +
Sbjct: 211 NLSA-LPTEALAPLRAL 226
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 548 KLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN 604
KL + G TQ+ + F G ++APE + KAD++S G+ A+E+ G
Sbjct: 144 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 203
Query: 605 SDNSLDMEKIYLL 617
M+ ++L+
Sbjct: 204 HSELHPMKVLFLI 216
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 548 KLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN 604
KL + G TQ+ + F G ++APE + KAD++S G+ A+E+ G
Sbjct: 164 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 223
Query: 605 SDNSLDMEKIYLL 617
M+ ++L+
Sbjct: 224 HSELHPMKVLFLI 236
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 70/197 (35%), Gaps = 26/197 (13%)
Query: 22 KELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI-PSTYAKLRNMQTLWASDA 80
+ LT+L +N + LA LEQL L+ + P+T+ L + TL
Sbjct: 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMS 140
P L+ L Q N+ Q +P D
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQA-LPD-----------------------DTFRD 151
Query: 141 LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN 200
L NLT L L I+ L +L L L N + P ++G L L+L N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 201 SLSGTLPTQKSENLQNI 217
+LS LPT+ L+ +
Sbjct: 212 NLSA-LPTEALAPLRAL 227
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 519 EVLVGIDSKPNTFSYAELRSATQDFDPSN---------KLGEGGYGPVYKKTQLMLSNFH 569
E+L G+D + ++E R +D +N KL + G TQ+ + F
Sbjct: 124 EILKGLD-----YLHSE-RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNXFV 177
Query: 570 G---YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLL 617
G ++APE + KAD++S G+ A+E+ G + + M ++L+
Sbjct: 178 GTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLI 228
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 548 KLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN 604
KL + G TQ+ + F G ++APE + KAD++S G+ A+E+ G
Sbjct: 159 KLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 218
Query: 605 SDNSLDMEKIYLL 617
M+ ++L+
Sbjct: 219 HSELHPMKVLFLI 231
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 521 LVGIDSKP-NTFSYAELRSATQDFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMR 579
LV +D KP N F R DF +LG G G V + Y+APE ++
Sbjct: 178 LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPR-------YMAPEL-LQ 229
Query: 580 GHLTEKADVFSFGVAALEI 598
G ADVFS G+ LE+
Sbjct: 230 GSYGTAADVFSLGLTILEV 248
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 548 KLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN 604
KL + G TQ+ + F G ++APE + KAD++S G+ A+E+ G
Sbjct: 144 KLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 203
Query: 605 SDNSLDMEKIYLL 617
M+ ++L+
Sbjct: 204 HSELHPMKVLFLI 216
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 220
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 221 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR-NFPCNR 269
N ++ P +NL ++ L +N S+IS GL LQ+ NF N+
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLNFSSNQ 162
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 134 SLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTL-DLSFNNLTGQIPRT--LFNIG 190
S+D V L NLT ++ N +T P L+NL L D+ NN QI L N+
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNN--NQIADITPLANLT 107
Query: 191 SLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFP-SWVTSNLQMNLVANNFTFDR 249
+L L L NN ++ P + NL ++LS N +S S +TS Q+N +N T
Sbjct: 108 NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVT--- 164
Query: 250 SNISVFPGLHCLQR 263
++ L L+R
Sbjct: 165 -DLKPLANLTTLER 177
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 22/208 (10%)
Query: 3 LSVAHNVFSG-SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
L ++ N S SV +L NL+ L NN S P +G L L++L LN G +
Sbjct: 178 LDISSNKVSDISVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLN----GNQ 228
Query: 62 IPS--TYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXX 119
+ T A L N+ L ++ + P + TKL L+ N P
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 286
Query: 120 XXXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179
+ + ++S + +LKNLT L+L I+ P + L LQ L +NN
Sbjct: 287 NLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKV 339
Query: 180 GQIPRTLFNIGSLNYLFLGNNSLSGTLP 207
+ +L N+ ++N+L G+N +S P
Sbjct: 340 SDV-SSLANLTNINWLSAGHNQISDLTP 366
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 141 LKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLG 198
L NL L + +T +IP+G+ +L L LDL+ N+L IPR F N+ SL +++L
Sbjct: 56 LVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLY 113
Query: 199 NN 200
NN
Sbjct: 114 NN 115
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 193 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 237
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
V + L + D ++ + +C Q +P MRP +++ + ++E G
Sbjct: 238 RFVMEGGLLDKPDNCPDMLLELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 288
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+++
Sbjct: 172 WTAPEAALYGRFTIKSDVWSFGILLTELVT 201
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 191 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 235
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
V + L + D ++ + +C Q +P MRP +++ + ++E G
Sbjct: 236 RFVMEGGLLDKPDNCPDMLLELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 286
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 151 NALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG--TLPT 208
N+ +P EL+NL LDLS L P ++ SL L + +N+ T P
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538
Query: 209 QKSENLQNIDLSYNHLSGP-------FPSWVTSNLQMNLVANNF 245
+ +LQ +D S NH+ FPS + +NL N+F
Sbjct: 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDF 579
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 37/186 (19%)
Query: 64 STYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXX 123
S + LRN+ L S + L+ L+ GNSFQ
Sbjct: 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF------------- 485
Query: 124 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183
+ DI+ L+NLT L L + P+ L +LQ L++S NN
Sbjct: 486 -LPDIFT---------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FS 532
Query: 184 RTLFNIGSLNYLFLGNNSLSGTLPTQKSE-----------NLQNIDLSYNHLSGPFPSWV 232
F LN L + + SL+ + ++K E NL D + F W+
Sbjct: 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592
Query: 233 TSNLQM 238
Q+
Sbjct: 593 KDQRQL 598
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 193 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 237
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 238 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 288
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDN 607
++APE + +EK DVFS+G+ E+I+ R D
Sbjct: 168 AWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE 205
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 151 NALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG--TLPT 208
N+ +P EL+NL LDLS L P ++ SL L + +N+ T P
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Query: 209 QKSENLQNIDLSYNHLSGP-------FPSWVTSNLQMNLVANNF 245
+ +LQ +D S NH+ FPS + +NL N+F
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDF 555
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 37/186 (19%)
Query: 64 STYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXX 123
S + LRN+ L S + L+ L+ GNSFQ
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF------------- 461
Query: 124 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183
+ DI+ L+NLT L L + P+ L +LQ L++S NN
Sbjct: 462 -LPDIFT---------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FS 508
Query: 184 RTLFNIGSLNYLFLGNNSLSGTLPTQKSE-----------NLQNIDLSYNHLSGPFPSWV 232
F LN L + + SL+ + ++K E NL D + F W+
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 568
Query: 233 TSNLQM 238
Q+
Sbjct: 569 KDQRQL 574
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 200 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 244
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 245 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 295
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDN 607
++APE + +EK DVFS+G+ E+I+ R D
Sbjct: 169 AWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE 206
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 228 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 272
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 273 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 323
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 206 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 250
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 251 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 301
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 206 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 250
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 251 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 301
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 200 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 244
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 245 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 295
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 158 IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG--TLPTQKSENLQ 215
+P EL+NL LDLS L P ++ SL L + +N+ T P + +LQ
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 216 NIDLSYNHLSGP-------FPSWVTSNLQMNLVANNF 245
+D S NH+ FPS + +NL N+F
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDF 260
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 37/186 (19%)
Query: 64 STYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXX 123
S + LRN+ L S + L+ L+ GNSFQ
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF------------- 166
Query: 124 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183
+ DI+ L+NLT L L + P+ L +LQ L++S NN
Sbjct: 167 -LPDIFT---------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FS 213
Query: 184 RTLFNIGSLNYLFLGNNSLSGTLPTQKSE-----------NLQNIDLSYNHLSGPFPSWV 232
F LN L + + SL+ + ++K E NL D + F W+
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273
Query: 233 TSNLQM 238
Q+
Sbjct: 274 KDQRQL 279
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 197 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 241
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 242 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 292
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 65/181 (35%), Gaps = 3/181 (1%)
Query: 22 KELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI-PSTYAKLRNMQTLWASDA 80
+ LT+L +N +G L LEQL L+ + P+T+ L ++ TL
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMS 140
P L+ L Q N+ Q +P + S +
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFR 173
Query: 141 -LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGN 199
L +L L L + P +L L TL L NNL+ L + SL YL L +
Sbjct: 174 GLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
Query: 200 N 200
N
Sbjct: 234 N 234
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 165 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNID---LSY 221
L LQ L L NNL T ++G+L +LFL N + ++P L ++D L
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQ 185
Query: 222 NHLSGPFPSW---VTSNLQMNLVANNFTFDRSNISV 254
NH++ P + + + L ANN + + + V
Sbjct: 186 NHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLV 221
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 199 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 243
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 244 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 294
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 196 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 240
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 241 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 291
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 199 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 243
Query: 631 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 244 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 294
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 13/98 (13%)
Query: 138 VMSLKNLTDLSLRNALITG----SIPSGI-GELQNLQTLDLSFNNLTGQIPRTLFN-IGS 191
+ +LK LT+L+ ++TG S+P+G+ +L NL+ L L N L +P +F+ + +
Sbjct: 78 ISALKELTNLTY--LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTN 134
Query: 192 LNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLSG 226
L YL+L +N L +LP K NL +DL N L
Sbjct: 135 LTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQS 171
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 345 LYQTSRISPGSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLR 404
LYQT R + S Y E G Y + L FAE ++VFD+ + G
Sbjct: 60 LYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQ--------QKVFDVRVNGHTV 111
Query: 405 WKDFDISKEAG 415
KD DI G
Sbjct: 112 VKDLDIFDRVG 122
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 345 LYQTSRISPGSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLR 404
LYQT R + S Y E G Y + L FAE ++VFD+ + G
Sbjct: 56 LYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQ--------QKVFDVRVNGHTV 107
Query: 405 WKDFDISKEAG 415
KD DI G
Sbjct: 108 VKDLDIFDRVG 118
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 14 VPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQ 73
VP+EL N K LT++ NN S N+ +L L L+ P T+ L++++
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 74 TL 75
L
Sbjct: 106 LL 107
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 142 KNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNS 201
K+LT + L N I+ + L TL LS+N L PRT + SL L L N
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 202 LSGTLPTQKSENLQNIDLSYNHLS-GPFPSWVTSNLQ 237
+S +P +L + +HL+ G P + N+Q
Sbjct: 114 IS-VVPEGAFNDLS----ALSHLAIGANPLYCDCNMQ 145
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 66/177 (37%), Gaps = 32/177 (18%)
Query: 53 LNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPX 112
L+++G G L N+ L D T P + N TK+ L GN +
Sbjct: 46 LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK----- 98
Query: 113 XXXXXXXXXXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLD 172
NVS+ + L+++ L L + IT P + L NLQ L
Sbjct: 99 -----------------NVSA----IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 135
Query: 173 LSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFP 229
L N +T P L + +L YL +GN +S P L + N +S P
Sbjct: 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNL 623
+ APE A+ G T K+DV+SFG+ E+ + GR ++ E + +E + +
Sbjct: 430 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRM 483
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 348 WTAPEAALYGRFTIKSDVWSFGILLTELTT 377
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTT 376
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTT 376
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 178 WTAPEAALYGRFTIKSDVWSFGILLTELTT 207
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTT 376
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 571 YLAPEYA-MRGHLTEKADVFSFGVAALEIISG 601
Y+APE RGH T+ AD +SFGV E+++G
Sbjct: 192 YMAPEVVNRRGH-TQSADWWSFGVLMFEMLTG 222
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 220
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 221 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR-NFPCNR 269
N ++ P +NL ++ L +N S+IS GL LQ+ +F N+
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLSFSSNQ 162
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 89/233 (38%), Gaps = 56/233 (24%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77
L L L LSF +N + P + NL LE+L ++S S AKL N+++L A
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 202
Query: 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDI---YNVSSS 134
++ + P +G T L L GN + ++D+ N S+
Sbjct: 203 TNNQISDITP--LGILTNLDELSLNGNQLKD-------IGTLASLTNLTDLDLANNQISN 253
Query: 135 LDFVMSLKNLTDLSLRNALITGSIP--------------------SGIGELQNLQTLDLS 174
L + L LT+L L I+ P S I L+NL L L
Sbjct: 254 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 313
Query: 175 FNNLTGQIP--------------------RTLFNIGSLNYLFLGNNSLSGTLP 207
FNN++ P +L N+ ++N+L G+N +S P
Sbjct: 314 FNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 366
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISG 601
Y+APE R T+ AD +SFGV E+++G
Sbjct: 192 YMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 222
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 571 YLAPEYA-MRGHLTEKADVFSFGVAALEIISG 601
Y+APE RGH T+ AD +SFGV E+++G
Sbjct: 193 YMAPEVVNRRGH-TQSADWWSFGVLMFEMLTG 223
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 178 WTAPEAALYGRFTIKSDVWSFGILLTELTT 207
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 519 EVLVGIDSKPNTFS-YAELRSATQDFDPSN--KLGEGGYGPVYKKTQLMLS-NFHGYLAP 574
E+++G++ N F Y +L+ A D ++ + G + K + S HGY+AP
Sbjct: 300 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAP 359
Query: 575 EYAMRG-HLTEKADVFSFGVAALEIISGRA 603
E +G AD FS G +++ G +
Sbjct: 360 EVLQKGVAYDSSADWFSLGCMLFKLLRGHS 389
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 519 EVLVGIDSKPNTFS-YAELRSATQDFDPSN--KLGEGGYGPVYKKTQLMLS-NFHGYLAP 574
E+++G++ N F Y +L+ A D ++ + G + K + S HGY+AP
Sbjct: 300 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAP 359
Query: 575 EYAMRG-HLTEKADVFSFGVAALEIISGRA 603
E +G AD FS G +++ G +
Sbjct: 360 EVLQKGVAYDSSADWFSLGCMLFKLLRGHS 389
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 160 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDL 219
S I LQ+++TLDL+ +T P L + +L L+L N ++ P NLQ + +
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 164
Query: 220 SYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGL 258
N ++ P S L +N D S ++ P L
Sbjct: 165 GNNQVNDLTPLANLSKLTTLRADDNKISDISPLASLPNL 203
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-------GRANSD 606
+ APE G T K+DV+SFG+ EI++ GR N+D
Sbjct: 177 WTAPEAINFGCFTIKSDVWSFGILLYEIVTYGKIPYPGRTNAD 219
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 171 WTAPEAALYGRFTIKSDVWSFGILLTELTT 200
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 519 EVLVGIDSKPNTFS-YAELRSATQDFDPSN--KLGEGGYGPVYKKTQLMLS-NFHGYLAP 574
E+++G++ N F Y +L+ A D ++ + G + K + S HGY+AP
Sbjct: 300 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAP 359
Query: 575 EYAMRG-HLTEKADVFSFGVAALEIISGRA 603
E +G AD FS G +++ G +
Sbjct: 360 EVLQKGVAYDSSADWFSLGCMLFKLLRGHS 389
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 170 WTAPEAALYGRFTIKSDVWSFGILLTELTT 199
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTT 210
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 174 WTAPEAALYGRFTIKSDVWSFGILLTELTT 203
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 220
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 120
Query: 221 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR 263
N ++ P +NL ++ L +N S+IS GL LQ+
Sbjct: 121 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQ 160
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 22/208 (10%)
Query: 3 LSVAHNVFSG-SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
L ++ N S SV +L NL+ L NN S P +G L L++L LN G +
Sbjct: 182 LDISSNKVSDISVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLN----GNQ 232
Query: 62 IPS--TYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXX 119
+ T A L N+ L ++ + P + TKL L+ N P
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 290
Query: 120 XXXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179
+ + ++S + +LKNLT L+L I+ P + L LQ L +NN
Sbjct: 291 NLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKV 343
Query: 180 GQIPRTLFNIGSLNYLFLGNNSLSGTLP 207
+ +L N+ ++N+L G+N +S P
Sbjct: 344 SDV-SSLANLTNINWLSAGHNQISDLTP 370
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 172 WTAPEAALYGRFTIKSDVWSFGILLTELTT 201
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTT 210
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTT 210
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 519 EVLVGIDSKPNTFS-YAELRSATQDFDPSN--KLGEGGYGPVYKKTQLMLS-NFHGYLAP 574
E+++G++ N F Y +L+ A D ++ + G + K + S HGY+AP
Sbjct: 299 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAP 358
Query: 575 EYAMRG-HLTEKADVFSFGVAALEIISGRA 603
E +G AD FS G +++ G +
Sbjct: 359 EVLQKGVAYDSSADWFSLGCMLFKLLRGHS 388
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTT 210
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTT 210
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTT 210
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTT 210
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTT 210
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 220
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 221 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR-NF 265
N ++ P +NL ++ L +N S+IS GL LQ+ NF
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLNF 158
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 22/208 (10%)
Query: 3 LSVAHNVFSG-SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
L ++ N S SV +L NL+ L NN S P +G L L++L LN G +
Sbjct: 177 LDISSNKVSDISVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLN----GNQ 227
Query: 62 IPS--TYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXX 119
+ T A L N+ L ++ + P + TKL L+ N P
Sbjct: 228 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 285
Query: 120 XXXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179
+ + ++S + +LKNLT L+L I+ P + L LQ L +NN
Sbjct: 286 NLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKV 338
Query: 180 GQIPRTLFNIGSLNYLFLGNNSLSGTLP 207
+ +L N+ ++N+L G+N +S P
Sbjct: 339 SDV-SSLANLTNINWLSAGHNQISDLTP 365
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 558 YKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRA 603
++ T++ + + ++APE ++ +DV+S+GV E+++G
Sbjct: 167 HRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEV 212
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
DF + + GY Y+K + ++ PE M G T K D +SFGV EI S
Sbjct: 204 DFGMARDIYRAGY---YRKGGCAMLPVK-WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 258
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 160 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDL 219
+G+ L L++L L N +T L + L+ L L +N +S +P LQN+ L
Sbjct: 125 NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 182
Query: 220 SYNHLS 225
S NH+S
Sbjct: 183 SKNHIS 188
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
DF + + GY Y+K + ++ PE M G T K D +SFGV EI S
Sbjct: 227 DFGMARDIYRAGY---YRKGGCAMLPVK-WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 281
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 92/232 (39%), Gaps = 36/232 (15%)
Query: 17 ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIP-STYAKLRNMQTL 75
+L NL+ L L+ N G +LE L + + P S + L ++ L
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 76 WASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQ-GPIPXXXXXXXXXXXXRISDIYNVSSS 134
S + L+ L QGNSFQ G I +++ + S
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISK-------------TNLLQMVGS 476
Query: 135 LDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNY 194
L+ ++ L + LS+ G L+N+ LDLS N+LTG L ++ L Y
Sbjct: 477 LE-ILILSSCNLLSIDQQAFHG--------LRNVNHLDLSHNSLTGDSMDALSHLKGL-Y 526
Query: 195 LFLGNNSLS----GTLPTQKSENLQNIDLSYNHLSGP-----FPSWVTSNLQ 237
L + +N++ LP +++ I+LS+N L F +W NL
Sbjct: 527 LNMASNNIRIIPPHLLPALSQQSI--INLSHNPLDCTCSNIHFITWYKENLH 576
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 156 GSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQ 215
S+P+GI N Q L L N +T P ++ +L L+LG+N L G LP ++L
Sbjct: 32 ASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 216 N---IDLSYNHLSGPFPSWVTSNL----QMNLVANNFT 246
+DL N L+ PS V L ++ + N T
Sbjct: 89 QLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT 125
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
++ PE M G T K D +SFGV EI S
Sbjct: 212 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 241
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
++ PE M G T K D +SFGV EI S
Sbjct: 212 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 241
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
++ PE M G T K D +SFGV EI S
Sbjct: 212 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 241
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
++ PE M G T K D +SFGV EI S
Sbjct: 226 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 255
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
++ PE M G T K D +SFGV EI S
Sbjct: 203 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 232
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
++ PE M G T K D +SFGV EI S
Sbjct: 218 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 247
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
++ PE M G T K D +SFGV EI S
Sbjct: 211 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 240
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
++ PE M G T K D +SFGV EI S
Sbjct: 228 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 257
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
++ PE M G T K D +SFGV EI S
Sbjct: 211 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 240
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
++ PE M G T K D +SFGV EI S
Sbjct: 226 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 255
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
++ PE M G T K D +SFGV EI S
Sbjct: 226 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 255
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
++ PE M G T K D +SFGV EI S
Sbjct: 238 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 267
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE G T K+DV+SFG+ +EI++
Sbjct: 335 WTAPEAINFGSFTIKSDVWSFGILLMEIVT 364
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
+ APE G T K+DV+SFG+ +EI++
Sbjct: 351 WTAPEAINFGSFTIKSDVWSFGILLMEIVT 380
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 168 LQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG-TLPTQKSENLQNIDLSYNHL 224
L +DLS+N L + + L L++ NN L L Q L+ +DLS+NHL
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 160 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDL 219
+G+ L L++L L N +T L + L+ L L +N +S +P LQN+ L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185
Query: 220 SYNHLS 225
S NH+S
Sbjct: 186 SKNHIS 191
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 602
+ APE G T K+DV+SFG+ +EI++ GR
Sbjct: 178 WTAPEAINFGSFTIKSDVWSFGILLMEIVTYGR 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,298,916
Number of Sequences: 62578
Number of extensions: 1024490
Number of successful extensions: 3264
Number of sequences better than 100.0: 184
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 2821
Number of HSP's gapped (non-prelim): 378
length of query: 755
length of database: 14,973,337
effective HSP length: 106
effective length of query: 649
effective length of database: 8,340,069
effective search space: 5412704781
effective search space used: 5412704781
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)