BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004414
         (755 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex
          Length = 963

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 160/763 (20%), Positives = 315/763 (41%), Gaps = 88/763 (11%)

Query: 9   VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68
           V +A+H L +D    N+  A +WL+Q Q +  AW  +  +L  D+       E+++F A 
Sbjct: 26  VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVP-----EIQYFGAS 80

Query: 69  ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128
            L  KI      + +   ++L   L     RF+SG   +LT++C+AL++L L  +    P
Sbjct: 81  ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP 140

Query: 129 -----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELL 183
                + +LF +  +        +A+LE+LTVLPEE   S+          R+    E  
Sbjct: 141 CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYR-KGLVRTSLAVECG 199

Query: 184 SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243
           +  P++ + L Q S                +K+L+C  SWV+     E+      A  L+
Sbjct: 200 AVFPLLEQLLQQPSSPSC----------VRQKVLKCFSSWVQ----LEVPLQDCEA--LI 243

Query: 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEG--LPQALLCRVPFX--XXXXXXXXXTDGDEK 299
              F +LQ    FD ++E +V  + + +       LL  +P              +GD +
Sbjct: 244 QAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDME 303

Query: 300 VIGGLACLMSEIGQAAPSLI---VEASPEALALADALLSCVAFPSE---DWEIADSTLQF 353
              G+  +   +G+     +   VE     LAL + ++ C   P     +   +  TL F
Sbjct: 304 TSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTF 363

Query: 354 WSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGL 413
           W TL   IL  +   A+ +   + ++  V+  L+D LL +AQ            D  +  
Sbjct: 364 WYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQF 420

Query: 414 VQFRMNLVELLVDICQLLRSATFIQKVF--FGS-WGSANVPIPWKEVETKLFALNVVSEV 470
             +R+++ + L+ + ++L  A  +  ++   G    S+  P  W+  E  L+    ++E 
Sbjct: 421 RIYRVDISDTLMYVYEML-GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479

Query: 471 VLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYR------SLAD----VIGSYSKWI 520
           +                     + S+ + G + ++ R       LAD     IG+ S+W+
Sbjct: 480 I-------------------DVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL 520

Query: 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK 580
           +        +L  +   +     S +  S L+KIC +    +  P    I+    + L K
Sbjct: 521 ADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMK 579

Query: 581 RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID----GDNNHSLI 636
           +         ++ A+  +L ++  +E+  NL + L+S   + + KL +      N  +++
Sbjct: 580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHS-LISPYIQQLEKLAEEIPNPSNKLAIV 638

Query: 637 HNPATYTQILSSATRGLY---RMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR 693
           H     + + ++     +     G     LPV     P G +P+  +L+  + +++K+  
Sbjct: 639 HILGLLSNLFTTLDISHHEDDHEGPELRKLPV-----PQGPNPVVVVLQQVFQLIQKVL- 692

Query: 694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNF 736
           S+ + +  +  A C     ++++    F  ++PQ+ + L   +
Sbjct: 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMY 735


>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex
          Length = 963

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 160/763 (20%), Positives = 307/763 (40%), Gaps = 88/763 (11%)

Query: 9   VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68
           V +A+H L +D    N+  A +WL Q Q +  AW  +  +L  D+       E+++F A 
Sbjct: 26  VEKALHQLYYDPNIENKNLAQKWLXQAQVSPQAWHFSWQLLQPDKVP-----EIQYFGAS 80

Query: 69  ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128
            L  KI      + +   ++L   L     RF+SG   +LT++C+AL++L L       P
Sbjct: 81  ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSXXPDAWP 140

Query: 129 IE-----KLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELL 183
                  +LF +  +        +A+LE+LTVLPEE   S+          R+    E  
Sbjct: 141 CAVADXVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYR-KGLVRTSLAVECG 199

Query: 184 SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243
           +  P++ + L Q S                +K+L+C  SWV+     E+      A  L+
Sbjct: 200 AVFPLLEQLLQQPSSPSC----------VRQKVLKCFSSWVQ----LEVPLQDCEA--LI 243

Query: 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEG--LPQALLCRVPFX--XXXXXXXXXTDGDEK 299
              F +LQ    FD ++E +V  + + +       LL  +P              +GD +
Sbjct: 244 QAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDXE 303

Query: 300 VIGGLACLMSEIGQAAPSLI---VEASPEALALADALLSCVAFPSE---DWEIADSTLQF 353
              G+  +   +G+     +   VE     LAL + +  C   P     +   +  TL F
Sbjct: 304 TSHGICRIAVALGENHSRALLDQVEHWQSFLALVNXIXFCTGIPGHYPVNETTSSLTLTF 363

Query: 354 WSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGL 413
           W TL   IL  +   A+ +   + ++  V+  L+D LL +AQ            D  +  
Sbjct: 364 WYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQF 420

Query: 414 VQFRMNLVELLVDICQLLRSATFIQKVF--FGS-WGSANVPIPWKEVETKLFALNVVSEV 470
             +R+++ + L  + + L  A  +  ++   G    S+  P  W+  E  L+    ++E 
Sbjct: 421 RIYRVDISDTLXYVYEXL-GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479

Query: 471 VLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYR------SLAD----VIGSYSKWI 520
           +                     + S+ + G + ++ R       LAD     IG+ S+W+
Sbjct: 480 I-------------------DVNYSDVVPGLIGLIPRISISNVQLADTVXFTIGALSEWL 520

Query: 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK 580
           +        +L  +   +     S +  S L+KIC +    +  P    I+    + L K
Sbjct: 521 ADHPVXINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLXK 579

Query: 581 RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID----GDNNHSLI 636
           +         +  A+  +L ++  +E+  NL + L+S   + + KL +      N  +++
Sbjct: 580 QIHKTSQCXWLXQALGFLLSALQVEEILKNLHS-LISPYIQQLEKLAEEIPNPSNKLAIV 638

Query: 637 HNPATYTQILSSATRGLY---RMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR 693
           H     + + ++     +     G     LPV     P G +P+  +L+  + +++K+  
Sbjct: 639 HILGLLSNLFTTLDISHHEDDHEGPELRKLPV-----PQGPNPVVVVLQQVFQLIQKVL- 692

Query: 694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNF 736
           S+ + +  +  A C     ++++    F   +PQ+ + L   +
Sbjct: 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPXVPQLCEXLGRXY 735


>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
 pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
          Length = 971

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 107/228 (46%), Gaps = 30/228 (13%)

Query: 18  HDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77
           + + S N+   ++WL   + +  AW+ +  ++   +       EV+FF A  L  K+   
Sbjct: 17  YRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQ-----EVQFFGAITLHSKLMKH 71

Query: 78  GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSL 136
            + +    ++ L   +L +  RF+ GP  +L ++C++L A I+  + E    IE++  + 
Sbjct: 72  WHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTF 131

Query: 137 QNLQ----SQDNGNMAVLEMLTVLPEE--VIDSQASDCNISS--AHRSQYGQELLSHTPM 188
           QN +    S D     +LE+LT +PEE  VI +      + +  A R Q    L+ HT  
Sbjct: 132 QNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQ----LVIHT-- 185

Query: 189 VVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVR------AGCFT 230
           V  +L  Q ++ +D     + +    + ++C+ +W++       GC T
Sbjct: 186 VERYLKLQMNRVWDA----EAYSNMNRAVKCVGTWIKNIGYTIEGCVT 229



 Score = 30.8 bits (68), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 129/300 (43%), Gaps = 32/300 (10%)

Query: 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA 510
           P  W ++E  +++   V+E    E +      I +L+ VL+    E+L   + ++  +L 
Sbjct: 475 PTHWTKLEACIYSFQSVAEHFGGEEK----RQIPRLMRVLAEIPYEKLN--VKLLGTAL- 527

Query: 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEI 570
           + +GSY  W+        P +  L  G++ ++S+ A    L+++C D    + +P    +
Sbjct: 528 ETMGSYCNWLMENPAYIPPAINLLVRGLNSSMSAQA-TLGLKELCRDCQLQL-KPYADPL 585

Query: 571 LMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGD 630
           L     +L    +   D   ++ +I  ++  +  +E+    L  ++S  +E +  +   D
Sbjct: 586 LNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP-KYLDIIVSPCFEELQAICQAD 644

Query: 631 NNHSLIHNPATYTQILSSATRGLYRMG---TVFSHLPVPL---PTNPAGDDPIFALLRVF 684
           +       PA       +  R ++R+    T+FS L   +    T+     P+  +++  
Sbjct: 645 SK-----TPA-------ARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRT 692

Query: 685 WPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHEC 744
            P+ +++     +E  ++  AAC A+  AI +    F  +L  +  CL     SFQ   C
Sbjct: 693 MPIFKRIAEM-WVEEIDVLEAACSAMKHAITNLRSSFQPMLQDL--CLFI-VASFQTRCC 748


>pdb|3SKV|A Chain A, Salicylyl-Acyltransferase Ssfx3 From A Tetracycline
           Biosynthetic Pathway
 pdb|3SKV|B Chain B, Salicylyl-Acyltransferase Ssfx3 From A Tetracycline
           Biosynthetic Pathway
          Length = 385

 Score = 34.7 bits (78), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 347 ADSTLQFWSTLASYILGLDA---SIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFND 403
           A S  + W  LA+   GLD    S A +  H++ MF  +   L  A L+  +V  S+F D
Sbjct: 201 AASPSRTWLALAARAEGLDLQSLSFAADGSHLQPMFARLIRDL-PADLISLRVGTSNFMD 259

Query: 404 -DGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGS 444
            DG VD P  LV F            Q++R    +  +  GS
Sbjct: 260 GDGFVDFPANLVGF-----------VQIIRERHPLTPIVLGS 290


>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
           Trypanosoma Brucei, Tb427tmp.160.5560
 pdb|4EFC|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
           Trypanosoma Brucei, Tb427tmp.160.5560
          Length = 472

 Score = 32.7 bits (73), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 349 STLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVD 408
           +T +F     ++   L A  + N +   DMF + +  L      R Q      N D +  
Sbjct: 218 TTGKFGGATGNFNAHLVAYPSVNWRAFADMFLAKYLGLK-----RQQATTQIENYDHLAA 272

Query: 409 LPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVP 451
           L D   +  + L+++  D+ Q +    F QKV  G  GS+ +P
Sbjct: 273 LCDACARLHVILIDMCRDVWQYISMGFFKQKVKEGEVGSSTMP 315


>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
           And Nucleotide Exchange Domains Of Intersectin
 pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
           And Nucleotide Exchange Domains Of Intersectin
          Length = 351

 Score = 31.6 bits (70), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 647 SSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFAL 680
           S+    +Y+     + + V LPT+P+GD+PIF +
Sbjct: 281 SNLQYKMYKTPIFLNEVLVKLPTDPSGDEPIFHI 314


>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
           Complex With Cdc42
 pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
           Complex With Cdc42
          Length = 352

 Score = 31.6 bits (70), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 653 LYRMGTVFSHLPVPLPTNPAGDDPIFAL 680
           +Y+     + + V LPT+P+GD+PIF +
Sbjct: 286 MYKTPIFLNEVLVKLPTDPSGDEPIFHI 313


>pdb|2CUN|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
           Pyrococcus Horikoshii Ot3
 pdb|2CUN|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
           Pyrococcus Horikoshii Ot3
          Length = 410

 Score = 31.6 bits (70), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 25/104 (24%)

Query: 115 LSALILRAVEHGKPIEKLF--YSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCN--- 169
           LS L+ + VE+   IE +F  Y+ + ++   +G +A+LE L    EEV +    +C    
Sbjct: 76  LSELLDQHVEY---IEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTF 132

Query: 170 ----------------ISSAHRSQYGQELLSH-TPMVVEFLMQQ 196
                            ++AHRSQ      +   PM++ FLM++
Sbjct: 133 LVKKLSKVIDYVVNDAFATAHRSQPSLVGFARIKPMIMGFLMEK 176


>pdb|2EBK|A Chain A, Solution Structure Of The Rwd Domain Of Human Rwd Domain
           Containing Protein 3
          Length = 128

 Score = 30.4 bits (67), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 539 SEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHL 583
           SE ++   C +   K+ E A +L+ EP   E+++WI + L  RH+
Sbjct: 79  SEQLTRAQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNL--RHI 121


>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
          Length = 510

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 647 SSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFAL 680
           S+A   +Y+     + + V LPT+P+ D+P+F +
Sbjct: 300 SNAQFKMYKTPIFLNEVLVKLPTDPSSDEPVFHI 333


>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
 pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
 pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
 pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
           Saccharomyces Cerevisiae Nab2
          Length = 852

 Score = 29.3 bits (64), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 120/320 (37%), Gaps = 75/320 (23%)

Query: 342 EDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSF 401
           +D  +A    +FW TLA   +  D  +    K +  +   +  + +D +LL+  V+  S 
Sbjct: 268 QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSG 327

Query: 402 NDDGMVDLP---------DGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPI 452
            DD + D           D L     +  ELL  I  LL+   F  +             
Sbjct: 328 GDDTISDWNLRKCSAAALDVLANVYRD--ELLPHILPLLKELLFHHE------------- 372

Query: 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLAD- 511
            W   E+ +  L  ++E  +Q    +   +I  L+  LS  ++         + RS+   
Sbjct: 373 -WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA---------LVRSITCW 422

Query: 512 VIGSYSKWI--SAFQTNARPLLLFLAAGI---SEAVSSNACASALRKICEDASALIDEPS 566
            +  Y+ W+      T  +PL+  L   I   ++ V   AC+         A A ++E +
Sbjct: 423 TLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS---------AFATLEEEA 473

Query: 567 NLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKL 626
             E++ ++   L+                  ++ + S  + KN L+       Y+AIG L
Sbjct: 474 CTELVPYLAYILDT-----------------LVFAFSKYQHKNLLIL------YDAIGTL 510

Query: 627 IDGDNNHSLIHNPATYTQIL 646
            D   +H    N   Y Q+L
Sbjct: 511 ADSVGHHL---NKPEYIQML 527


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,028,273
Number of Sequences: 62578
Number of extensions: 753232
Number of successful extensions: 1923
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1903
Number of HSP's gapped (non-prelim): 18
length of query: 755
length of database: 14,973,337
effective HSP length: 106
effective length of query: 649
effective length of database: 8,340,069
effective search space: 5412704781
effective search space used: 5412704781
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)