Query 004414
Match_columns 755
No_of_seqs 168 out of 1082
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 23:02:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 7.1E-71 1.5E-75 590.2 60.5 695 1-739 1-757 (982)
2 KOG2081 Nuclear transport regu 100.0 4.5E-69 9.7E-74 556.6 51.8 550 26-623 2-558 (559)
3 KOG2021 Nuclear mRNA export fa 100.0 3.3E-57 7.1E-62 475.7 52.2 682 8-735 4-746 (980)
4 KOG2023 Nuclear transport rece 100.0 7.7E-39 1.7E-43 333.5 34.0 611 6-745 12-683 (885)
5 KOG2171 Karyopherin (importin) 100.0 4.8E-37 1E-41 342.1 50.0 606 6-739 3-618 (1075)
6 COG5101 CRM1 Importin beta-rel 100.0 6.1E-35 1.3E-39 302.1 50.5 589 6-630 13-678 (1053)
7 KOG1241 Karyopherin (importin) 100.0 7.4E-34 1.6E-38 301.6 48.0 601 19-738 12-649 (859)
8 COG5215 KAP95 Karyopherin (imp 100.0 8.2E-27 1.8E-31 239.9 45.9 612 9-739 6-651 (858)
9 KOG2020 Nuclear transport rece 99.9 8E-20 1.7E-24 209.4 45.8 586 5-628 8-656 (1041)
10 KOG1991 Nuclear transport rece 99.9 2E-18 4.4E-23 190.2 53.3 627 8-738 5-693 (1010)
11 KOG1992 Nuclear export recepto 99.7 5.3E-13 1.1E-17 144.8 48.9 617 5-728 3-685 (960)
12 PF08389 Xpo1: Exportin 1-like 99.7 8.4E-16 1.8E-20 143.3 13.1 146 104-263 1-148 (148)
13 COG5656 SXM1 Importin, protein 99.5 1.3E-08 2.7E-13 110.1 51.8 635 19-738 14-692 (970)
14 KOG1410 Nuclear transport rece 99.5 6.1E-08 1.3E-12 103.5 54.3 295 3-314 1-335 (1082)
15 KOG2274 Predicted importin 9 [ 99.5 3.4E-09 7.3E-14 117.0 45.1 499 9-604 6-563 (1005)
16 KOG1993 Nuclear transport rece 99.3 1.2E-07 2.6E-12 103.5 41.5 123 9-139 2-131 (978)
17 PF03810 IBN_N: Importin-beta 98.9 6.2E-09 1.3E-13 84.6 7.5 67 28-98 1-76 (77)
18 KOG2171 Karyopherin (importin) 98.6 0.0027 5.9E-08 73.7 49.7 442 210-735 94-570 (1075)
19 COG5657 CSE1 CAS/CSE protein i 98.4 0.0069 1.5E-07 68.6 40.6 127 3-138 1-134 (947)
20 KOG2023 Nuclear transport rece 97.8 0.027 5.9E-07 61.7 28.8 217 480-734 391-610 (885)
21 PF08506 Cse1: Cse1; InterPro 97.3 0.0022 4.8E-08 68.3 11.7 201 327-551 140-370 (370)
22 KOG0915 Uncharacterized conser 97.2 0.39 8.5E-06 58.0 29.5 160 375-563 988-1167(1702)
23 KOG1242 Protein containing ada 96.8 1.2 2.5E-05 49.3 34.9 314 377-737 208-545 (569)
24 KOG1824 TATA-binding protein-i 96.6 2.1 4.5E-05 49.6 45.5 162 451-627 490-664 (1233)
25 KOG1824 TATA-binding protein-i 96.5 2.3 5E-05 49.2 43.0 298 43-399 5-312 (1233)
26 PF01602 Adaptin_N: Adaptin N 96.4 2.6 5.7E-05 47.9 37.6 424 18-559 52-486 (526)
27 KOG1241 Karyopherin (importin) 96.4 2.6 5.6E-05 47.7 49.0 454 212-725 342-821 (859)
28 PRK09687 putative lyase; Provi 93.7 7.9 0.00017 39.8 19.3 208 9-268 25-250 (280)
29 PF12755 Vac14_Fab1_bd: Vacuol 93.2 0.4 8.6E-06 40.4 7.3 89 457-554 3-94 (97)
30 PF08767 CRM1_C: CRM1 C termin 92.9 4.5 9.8E-05 42.5 16.2 169 211-394 42-223 (319)
31 PF02985 HEAT: HEAT repeat; I 92.7 0.16 3.5E-06 32.5 3.3 29 530-558 1-31 (31)
32 KOG1242 Protein containing ada 92.6 15 0.00033 40.9 20.0 232 453-738 188-426 (569)
33 PF13513 HEAT_EZ: HEAT-like re 92.0 0.21 4.5E-06 37.0 3.6 54 454-515 1-54 (55)
34 PF12348 CLASP_N: CLASP N term 91.6 3.3 7.1E-05 41.2 13.0 139 450-603 17-163 (228)
35 PF12755 Vac14_Fab1_bd: Vacuol 91.5 0.99 2.1E-05 38.0 7.6 39 524-562 22-62 (97)
36 COG5181 HSH155 U2 snRNP splice 91.5 27 0.00058 39.0 22.4 303 239-602 602-914 (975)
37 PF10508 Proteasom_PSMB: Prote 91.4 12 0.00025 42.3 18.4 133 453-604 51-193 (503)
38 KOG2956 CLIP-associating prote 90.1 11 0.00023 40.6 15.1 174 511-729 315-492 (516)
39 KOG0166 Karyopherin (importin) 89.7 6.2 0.00013 43.5 13.5 141 540-715 123-266 (514)
40 PF13513 HEAT_EZ: HEAT-like re 89.5 0.38 8.3E-06 35.6 3.1 50 504-554 3-55 (55)
41 cd00020 ARM Armadillo/beta-cat 89.5 0.48 1E-05 41.3 4.3 97 452-556 19-120 (120)
42 KOG0213 Splicing factor 3b, su 89.1 48 0.001 38.0 24.0 225 327-604 882-1111(1172)
43 KOG1059 Vesicle coat complex A 88.6 51 0.0011 37.7 32.4 217 84-359 140-365 (877)
44 KOG1062 Vesicle coat complex A 87.9 59 0.0013 37.7 35.3 27 331-359 353-379 (866)
45 PLN03200 cellulose synthase-in 87.0 1.2E+02 0.0025 40.1 46.3 229 6-277 12-270 (2102)
46 KOG1991 Nuclear transport rece 85.9 83 0.0018 37.4 48.3 385 212-630 105-559 (1010)
47 KOG1059 Vesicle coat complex A 85.3 70 0.0015 36.6 18.3 54 504-561 160-215 (877)
48 KOG0166 Karyopherin (importin) 84.9 12 0.00027 41.3 12.3 258 416-717 126-395 (514)
49 PTZ00429 beta-adaptin; Provisi 83.5 1E+02 0.0022 36.5 42.2 127 18-159 78-209 (746)
50 PTZ00429 beta-adaptin; Provisi 83.1 99 0.0021 36.6 19.6 103 481-597 139-245 (746)
51 PF12348 CLASP_N: CLASP N term 82.6 25 0.00053 34.8 13.0 172 60-271 21-209 (228)
52 KOG0212 Uncharacterized conser 82.5 74 0.0016 35.4 16.6 237 459-739 62-303 (675)
53 KOG0915 Uncharacterized conser 82.4 66 0.0014 40.1 17.7 97 450-557 967-1069(1702)
54 KOG2160 Armadillo/beta-catenin 82.0 52 0.0011 34.4 14.9 144 450-606 93-246 (342)
55 PF03378 CAS_CSE1: CAS/CSE pro 80.2 58 0.0013 35.9 15.6 204 526-743 23-257 (435)
56 PF03378 CAS_CSE1: CAS/CSE pro 79.1 1E+02 0.0022 34.0 17.0 196 145-395 46-252 (435)
57 KOG4653 Uncharacterized conser 79.0 56 0.0012 38.2 14.9 177 512-726 747-929 (982)
58 PF08167 RIX1: rRNA processing 78.0 14 0.0003 34.6 8.8 80 45-133 30-110 (165)
59 COG5215 KAP95 Karyopherin (imp 77.0 1.3E+02 0.0028 33.6 44.2 172 543-748 572-743 (858)
60 COG5240 SEC21 Vesicle coat com 76.1 75 0.0016 35.4 14.2 119 4-138 299-423 (898)
61 PF12460 MMS19_C: RNAPII trans 74.1 1.4E+02 0.0031 32.7 32.2 209 452-734 202-413 (415)
62 KOG0213 Splicing factor 3b, su 72.6 1.9E+02 0.0042 33.5 34.3 307 410-737 726-1046(1172)
63 PRK09687 putative lyase; Provi 70.3 1.2E+02 0.0026 31.1 14.2 134 417-596 145-278 (280)
64 KOG0168 Putative ubiquitin fus 70.1 2.3E+02 0.005 33.4 18.3 41 673-720 329-369 (1051)
65 PF13646 HEAT_2: HEAT repeats; 67.9 34 0.00074 27.6 8.0 56 10-72 2-57 (88)
66 KOG1992 Nuclear export recepto 67.6 2.5E+02 0.0055 33.0 21.1 243 480-749 4-310 (960)
67 PF12717 Cnd1: non-SMC mitotic 66.0 1.2E+02 0.0026 28.6 14.6 118 486-620 29-156 (178)
68 PF10274 ParcG: Parkin co-regu 65.7 24 0.00052 33.4 7.1 55 677-734 74-131 (183)
69 PF08167 RIX1: rRNA processing 64.9 1.2E+02 0.0026 28.3 12.1 106 142-271 38-146 (165)
70 smart00802 UME Domain in UVSB 64.9 69 0.0015 27.5 9.2 90 528-623 10-105 (107)
71 PF08064 UME: UME (NUC010) dom 64.4 64 0.0014 27.6 9.1 75 543-623 31-105 (107)
72 PF13646 HEAT_2: HEAT repeats; 63.3 20 0.00043 29.0 5.7 57 8-70 31-87 (88)
73 KOG2753 Uncharacterized conser 62.3 2E+02 0.0044 29.9 14.2 73 526-601 104-177 (378)
74 PF10508 Proteasom_PSMB: Prote 62.1 1.8E+02 0.004 32.8 14.8 155 186-359 75-231 (503)
75 PF05804 KAP: Kinesin-associat 61.7 3.3E+02 0.0071 32.1 17.1 59 677-738 525-587 (708)
76 PF04826 Arm_2: Armadillo-like 60.7 1.9E+02 0.0042 29.2 17.2 133 452-601 25-164 (254)
77 KOG0168 Putative ubiquitin fus 60.7 3.5E+02 0.0075 32.1 17.9 115 481-606 210-329 (1051)
78 COG5064 SRP1 Karyopherin (impo 60.4 25 0.00054 36.3 6.5 90 454-557 171-273 (526)
79 PF08389 Xpo1: Exportin 1-like 59.0 34 0.00074 30.9 7.0 47 504-551 102-148 (148)
80 KOG2021 Nuclear mRNA export fa 58.7 24 0.00052 40.3 6.6 41 696-736 545-585 (980)
81 KOG2274 Predicted importin 9 [ 56.8 4.1E+02 0.0089 31.7 17.3 132 480-621 528-666 (1005)
82 PF02985 HEAT: HEAT repeat; I 56.6 21 0.00046 22.5 3.6 28 484-518 2-29 (31)
83 PF08064 UME: UME (NUC010) dom 56.4 1.3E+02 0.0028 25.8 10.5 38 699-736 67-105 (107)
84 KOG1020 Sister chromatid cohes 56.3 5.3E+02 0.011 32.8 20.1 262 463-737 836-1157(1692)
85 PF12717 Cnd1: non-SMC mitotic 54.7 1.9E+02 0.0041 27.3 12.0 47 511-557 7-55 (178)
86 KOG1240 Protein kinase contain 54.7 5.1E+02 0.011 32.2 21.1 296 22-387 437-748 (1431)
87 COG5101 CRM1 Importin beta-rel 54.5 3.2E+02 0.0069 31.1 14.0 74 480-559 190-264 (1053)
88 COG5181 HSH155 U2 snRNP splice 50.5 4.3E+02 0.0093 30.1 16.6 238 480-737 602-851 (975)
89 PF13251 DUF4042: Domain of un 50.2 1.4E+02 0.0031 28.4 9.5 85 541-629 54-156 (182)
90 KOG1967 DNA repair/transcripti 47.6 1.7E+02 0.0037 34.7 11.1 94 522-617 809-912 (1030)
91 cd00020 ARM Armadillo/beta-cat 47.4 99 0.0022 26.2 7.8 96 210-312 21-119 (120)
92 PF01602 Adaptin_N: Adaptin N 43.1 5.3E+02 0.011 29.0 34.4 167 416-606 320-489 (526)
93 PF12719 Cnd3: Nuclear condens 42.6 4E+02 0.0088 27.5 15.4 110 504-618 43-164 (298)
94 KOG2011 Sister chromatid cohes 40.5 7.9E+02 0.017 30.3 15.9 228 310-557 96-356 (1048)
95 PF00514 Arm: Armadillo/beta-c 40.5 43 0.00092 22.7 3.4 27 530-556 13-41 (41)
96 PF08506 Cse1: Cse1; InterPro 38.4 2.7E+02 0.0059 29.9 10.7 95 646-745 50-155 (370)
97 KOG0567 HEAT repeat-containing 36.7 1.3E+02 0.0028 30.2 7.1 84 456-562 172-256 (289)
98 COG5064 SRP1 Karyopherin (impo 36.2 5.3E+02 0.012 27.0 12.6 154 511-715 114-272 (526)
99 PF10363 DUF2435: Protein of u 35.7 2.6E+02 0.0056 23.2 8.8 70 531-605 5-77 (92)
100 PLN03200 cellulose synthase-in 35.3 1.3E+03 0.028 31.2 35.9 281 22-359 418-723 (2102)
101 KOG1943 Beta-tubulin folding c 34.9 2.3E+02 0.005 34.3 9.9 138 457-602 445-613 (1133)
102 KOG1078 Vesicle coat complex C 34.8 8.3E+02 0.018 28.8 17.8 141 9-162 283-425 (865)
103 KOG0212 Uncharacterized conser 34.6 7.2E+02 0.016 28.1 25.0 228 5-271 20-282 (675)
104 cd07064 AlkD_like_1 A new stru 33.3 1.7E+02 0.0036 28.6 7.5 62 16-87 20-83 (208)
105 cd03568 VHS_STAM VHS domain fa 32.9 3.6E+02 0.0078 24.5 9.1 45 518-562 26-72 (144)
106 PF11865 DUF3385: Domain of un 32.8 1.1E+02 0.0025 28.3 6.0 37 703-739 104-140 (160)
107 PF09384 UTP15_C: UTP15 C term 30.4 2.1E+02 0.0046 26.1 7.2 44 521-564 70-113 (148)
108 PF01603 B56: Protein phosphat 30.3 3.8E+02 0.0083 29.3 10.4 126 212-356 191-323 (409)
109 COG5240 SEC21 Vesicle coat com 27.3 8.3E+02 0.018 27.7 11.8 54 504-560 503-561 (898)
110 KOG4524 Uncharacterized conser 26.4 3.2E+02 0.007 32.8 9.1 48 672-722 836-883 (1014)
111 TIGR03504 FimV_Cterm FimV C-te 26.3 81 0.0017 22.1 2.8 32 3-34 12-43 (44)
112 smart00802 UME Domain in UVSB 25.9 4.3E+02 0.0092 22.7 10.9 50 686-736 55-105 (107)
113 PF10274 ParcG: Parkin co-regu 25.8 5.9E+02 0.013 24.3 9.7 75 233-311 30-107 (183)
114 PF10521 DUF2454: Protein of u 24.9 6.5E+02 0.014 25.8 10.5 72 184-268 115-203 (282)
115 KOG1078 Vesicle coat complex C 24.3 7E+02 0.015 29.4 11.0 48 504-555 482-531 (865)
116 KOG2199 Signal transducing ada 24.0 3.1E+02 0.0066 29.3 7.6 51 512-562 28-80 (462)
117 PF08072 BDHCT: BDHCT (NUC031) 21.9 95 0.0021 21.1 2.3 19 589-607 3-21 (41)
118 PF05918 API5: Apoptosis inhib 21.5 1.4E+02 0.003 33.8 5.0 60 510-574 43-104 (556)
119 KOG0211 Protein phosphatase 2A 21.2 6.3E+02 0.014 30.0 10.3 130 413-555 531-663 (759)
120 PF07539 DRIM: Down-regulated 21.2 1.2E+02 0.0027 27.4 3.8 32 186-225 15-46 (141)
121 KOG1058 Vesicle coat complex C 21.0 9.3E+02 0.02 28.3 11.0 141 461-619 77-252 (948)
122 KOG1240 Protein kinase contain 20.9 1.7E+03 0.037 27.9 22.3 97 211-320 438-544 (1431)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-71 Score=590.22 Aligned_cols=695 Identities=19% Similarity=0.291 Sum_probs=535.3
Q ss_pred CCchHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCC
Q 004414 1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (755)
Q Consensus 1 m~~~~~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~ 80 (755)
|+.+..+.|++++..||++++++.++.+++||++.|+||+||.+.+.||+..+. .++|||||.||+.||+++|++
T Consensus 1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~-----~evqyFGAltL~~ki~~~~e~ 75 (982)
T KOG2022|consen 1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS-----SEVQYFGALTLHDKINTRWEE 75 (982)
T ss_pred CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch-----hHHHHHhHHHHHHHHHhhhcc
Confidence 777789999999999999889999999999999999999999999999998875 488999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCC----CchhHHHHHHHh
Q 004414 81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQ----DNGNMAVLEMLT 154 (755)
Q Consensus 81 l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~--~W~~~i~~li~~~~~~~~~----~~~~~~lL~iL~ 154 (755)
+++++...|+.+++..+.++++||+.|.||+|.++|.+.+++. .||+++.+++..++...++ .-...++|+.|+
T Consensus 76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls 155 (982)
T KOG2022|consen 76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS 155 (982)
T ss_pred CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999885 6999999999999874321 224688999999
Q ss_pred hhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCc
Q 004414 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (755)
Q Consensus 155 ~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~ 234 (755)
.+|+|.... .++..+|..++.++...+..+..++..+++..++...+..+-..+..+++|+.+|+++. ..+.
T Consensus 156 ~~p~e~q~~-----~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i---~~~~ 227 (982)
T KOG2022|consen 156 FMPAEFQHV-----TLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI---SLTG 227 (982)
T ss_pred cCcHhhhhc-----cchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh---cccc
Confidence 999999643 27778899999999999999999888888876532100001135788999999999964 2332
Q ss_pred chhcccchHHHHHhhcCC--C---------------CcHHHHHHHHHHHhhc-----CCChhHHHHHhhhh-hHHHhhh-
Q 004414 235 GSLAAHPLLNFVFNSLQV--Q---------------SSFDVAIEVLVELVGR-----HEGLPQALLCRVPF-LKELLLL- 290 (755)
Q Consensus 235 ~~~~~~~ll~~~~~~L~~--~---------------~~~~~a~~~l~eii~~-----~~~~~~~l~~~~~~-l~~~~~~- 290 (755)
.. ...++..++..+.. + .+.+..+...+..+.+ |..-...|++...+ +++.-..
T Consensus 228 ~~--c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~ 305 (982)
T KOG2022|consen 228 MD--CDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI 305 (982)
T ss_pred cc--HHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 22 23344444444431 1 1111111111222221 22212233333333 2221110
Q ss_pred hhhcCCC--HHHHhHHHHHHHHHHHHhhHHHHhcC------hhHHHHHHHHHhcccCCCCCcc----hhhhcHHHHHHHH
Q 004414 291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEAS------PEALALADALLSCVAFPSEDWE----IADSTLQFWSTLA 358 (755)
Q Consensus 291 ~~~~~~d--~e~~~~l~~l~~~l~e~~~~~l~~~~------~~~~~ll~~ll~~~~~p~~d~~----v~~~~~~FW~~l~ 358 (755)
....+.| +|....++++++.++|+|.+.+.++- ..+.++++.|+.|+++||+ |+ ++..++.||++|+
T Consensus 306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~-ypveE~~S~~~l~FW~tL~ 384 (982)
T KOG2022|consen 306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQ-YPVEEIVSDRTLIFWYTLQ 384 (982)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCC-ccHHHHHhHHHHHHHHHHH
Confidence 1334455 77888999999999999999887642 2467999999999999994 55 4569999999999
Q ss_pred HHhhhcchhhhhhhhhhhhhhH-HHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHH--
Q 004414 359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT-- 435 (755)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~-- 435 (755)
+++..+..+.+ +.....++ |+|.+|++++++|+.+|.++.+..|..|++|.|++||++++|+++++|.++|+..
T Consensus 385 dei~~~~~e~~---~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~ 461 (982)
T KOG2022|consen 385 DEIMQTINETQ---QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLD 461 (982)
T ss_pred HHHHHhhhccC---CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99876654432 22233454 9999999999999999998777789999999999999999999999999999652
Q ss_pred HHHHHHHHhhcCCC-CCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhcc----CchhhhhhHHHHHHhHHH
Q 004414 436 FIQKVFFGSWGSAN-VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSA----SRSEELKGFMHIVYRSLA 510 (755)
Q Consensus 436 ~l~~~~~~~~~~~~-~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~----~~~~~~~~~~~v~~~t~~ 510 (755)
++...+.++..++. .+.+|...|||+|++.++++....++. +.++.++...++ .+++ .+..|+ +
T Consensus 462 ~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~n~------ql~~Ts-s 530 (982)
T KOG2022|consen 462 FLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAPNP------QLLSTS-S 530 (982)
T ss_pred HHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccCCh------hHHHHH-H
Confidence 22233333333322 455699999999999999999875443 566666655443 2333 245565 6
Q ss_pred HHHHhhHHHHHhCccchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHH-HHHHHhcCCChhhHH
Q 004414 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWI-GEALEKRHLPLEDEE 589 (755)
Q Consensus 511 ~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~-~~~l~~~~l~~~~~~ 589 (755)
.+||.|+.|+..||.+|.+.++.+++++++++....|-..+.+||++|+.+|. | |.+.+... ++.+.....+..++.
T Consensus 531 ~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~-p-y~d~~~a~~~e~l~~~~~~~S~~~ 608 (982)
T KOG2022|consen 531 DLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLD-P-YADQFSAVCYEVLNKSNAKDSDRL 608 (982)
T ss_pred HHHHHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCc-h-HHHHHHHHHHHHhcccccCchHHH
Confidence 99999999999999999999999999999999888888999999999999984 4 67666554 445555666788999
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCC
Q 004414 590 EVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPT 669 (755)
Q Consensus 590 ~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~ 669 (755)
+++.+||+|++.+-+|+. .+|+.++++|++..++.++....+ +|.+. ...+..+.+++.+|.++..+.+.
T Consensus 609 klm~sIGyvls~~~pEe~-~kyl~~lin~il~qle~~l~~~i~-----~~e~~----l~~~~~l~~iS~LftSL~~~~~~ 678 (982)
T KOG2022|consen 609 KLMKSIGYVLSRLKPEEI-PKYLMKLINPILSQLEINLAPGID-----DQENH----LRIAFQLNTISALFTSLINKKDI 678 (982)
T ss_pred HHHHHHHHHHHhccHHhH-HHHHHHHHHHHHHHHHHhhcCCCC-----CHHHH----HHHHHHHHHHHHHHhccCCCCcc
Confidence 999999999999887776 899999999999999999776543 22111 12233456678888888754321
Q ss_pred C---C--C-----CCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhh-HhhHHHHHHHHHHHHhh
Q 004414 670 N---P--A-----GDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-VTLLPQVLDCLSTNFVS 738 (755)
Q Consensus 670 ~---~--~-----~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~-~~~l~~~~~~l~~~f~~ 738 (755)
. . . ...|++.++++++|+++.++. .|-++..++|+.|..++++++.+++.| .|++|.+..+++. |..
T Consensus 679 ~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~ 756 (982)
T KOG2022|consen 679 IDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLT 756 (982)
T ss_pred ccccchhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hcc
Confidence 1 0 1 112788999999999999999 799999999999999999999999999 9999999999998 766
Q ss_pred c
Q 004414 739 F 739 (755)
Q Consensus 739 ~ 739 (755)
+
T Consensus 757 ~ 757 (982)
T KOG2022|consen 757 S 757 (982)
T ss_pred c
Confidence 5
No 2
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-69 Score=556.61 Aligned_cols=550 Identities=25% Similarity=0.399 Sum_probs=481.4
Q ss_pred HHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHhcCCCh
Q 004414 26 VAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPP 105 (755)
Q Consensus 26 ~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~ 105 (755)
.+|+.||.+||+|+++|++|.++|.... +.+..+|||||+++||+++|+++|+.....+|++|+++++....++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~-----~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~ 76 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKC-----DVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPD 76 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccc-----hHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCc
Confidence 4799999999999999999999998763 57999999999999999999999999999999999999998777777
Q ss_pred HHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhc
Q 004414 106 QLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSH 185 (755)
Q Consensus 106 ~v~~kL~~~la~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~ 185 (755)
.+++||+.++|++++++++|.+++.+++...++. +.....+|++|+++|||+.+.+. .....||+++++++...
T Consensus 77 ~i~tQL~vavA~Lal~~~~W~n~I~e~v~~~~~~---~~~~~~lLeiL~VlPEE~~~~~~---~~~a~Rr~e~~~~l~~~ 150 (559)
T KOG2081|consen 77 VIRTQLAVAVAALALHMPEWVNPIFELVRALSNK---HPAVPILLEILKVLPEETRDIRL---TVGANRRHEFIDELAAQ 150 (559)
T ss_pred hHHHHHHHHHHHHHHHhHhhcchHHHHHHHhhcC---CccHHHHHHHHHhCcHhhcchhh---hhhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999874 23478999999999999976543 26778999999999999
Q ss_pred hhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhccc-chHHHHHhhcCCCCcHHHHHHHHH
Q 004414 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAH-PLLNFVFNSLQVQSSFDVAIEVLV 264 (755)
Q Consensus 186 ~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~-~ll~~~~~~L~~~~~~~~a~~~l~ 264 (755)
++.++.++..+++.++.+ +.+...++|+|+.||.+++ .+|.+.+... +++..+|..+++++++++|.+|++
T Consensus 151 ~~~~L~~l~~lLe~~~l~-----~~~~l~~Vl~~l~SWl~~~---~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic 222 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDLK-----SSDDLEQVLRCLGSWLRLH---VFPPDQVLASFPLITLAFRSLSDDELHEEATECIC 222 (559)
T ss_pred HHHHHHHHHHHHhhcCCC-----hhhHHHHHHHHHhhhhhhc---cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHH
Confidence 999999999999987642 3568899999999999987 6788876555 999999999999999999999999
Q ss_pred HHhhcCC------ChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhccc
Q 004414 265 ELVGRHE------GLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVA 338 (755)
Q Consensus 265 eii~~~~------~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~ 338 (755)
.+++... .+...++..+.-+...+. .++..+|.|...++||+|+++||+|...+..+|+++..+++.+|.+++
T Consensus 223 ~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~-~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~ 301 (559)
T KOG2081|consen 223 ALLYCSLDRSEGLPLAAILFIGVIILETAFH-LAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG 301 (559)
T ss_pred HHHHHhhhhhccCchhHHHhccccccchHHH-HhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc
Confidence 9988542 244445544433333333 477788999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHH
Q 004414 339 FPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRM 418 (755)
Q Consensus 339 ~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~ 418 (755)
|+ |++|.+.+|.||+.+.+.++..++ ......|+|+|.++++.+.++++||+|.+ +..|++++|.+||.
T Consensus 302 h~--~~evie~SF~fW~~lse~l~~~~~------~~~~~~frpy~~rLvs~l~~h~qlp~~~~---~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 302 HN--DTEVIEASFNFWYSLSEELTLTDD------DEALGIFRPYFLRLVSLLKRHVQLPPDQF---DLPEEESEFFEFRL 370 (559)
T ss_pred CC--chhhhhhhHHhhhhhHHHHhcccc------HHHHHHhHHHHHHHHHHHHHHccCCCccc---cCccchhHHHHHHH
Confidence 98 789999999999999998865543 35567899999999999999999999532 44577899999999
Q ss_pred HHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhh
Q 004414 419 NLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEEL 498 (755)
Q Consensus 419 ~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~ 498 (755)
.++|++.|+..++|.+.++.+++..+.+ ++.+|+..||+||.+++++..++.++++. +|.+++++.++|...+
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e---~~~~We~~EAaLF~l~~~~~~~~~~e~~i-~pevl~~i~nlp~Q~~--- 443 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKE---NNASWEEVEAALFILRAVAKNVSPEENTI-MPEVLKLICNLPEQAP--- 443 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcc---CCCchHHHHHHHHHHHHHhccCCccccch-HHHHHHHHhCCccchh---
Confidence 9999999999999999999999988765 46789999999999999999999876654 7888888888887554
Q ss_pred hhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHH
Q 004414 499 KGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEAL 578 (755)
Q Consensus 499 ~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l 578 (755)
+|||++ .++|+|++|+..||+++.++++++..++...+.+.+|+.+++++|..|+.++. ...+.+..+...+
T Consensus 444 -----~~~ts~-ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~--~l~~~~~~l~~~l 515 (559)
T KOG2081|consen 444 -----LRYTSI-LLLGEYSEWVEQHPELLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMT--CLIPSLLELIRSL 515 (559)
T ss_pred -----HHHHHH-HHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 789985 99999999999999999999999999999888999999999999999998873 4888888888887
Q ss_pred HhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHH
Q 004414 579 EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAI 623 (755)
Q Consensus 579 ~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l 623 (755)
.....+.+... +.+|++.+++.+|.++. ...++.+++|.+.++
T Consensus 516 ~~~~~~~e~a~-l~~~~s~i~~~lp~~k~-~~~~~el~~~~l~~l 558 (559)
T KOG2081|consen 516 DSTQINEEAAC-LLQGISLIISNLPAHKA-KIALEELCEPQLRNL 558 (559)
T ss_pred HHHhccHHHHH-HHHHHHHHHhcCCHhhh-hHHHHHHhhHHHhcc
Confidence 66666777777 99999999999999987 788999999877653
No 3
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-57 Score=475.68 Aligned_cols=682 Identities=16% Similarity=0.159 Sum_probs=513.2
Q ss_pred HHHHHHHHhccC-CChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHH
Q 004414 8 KVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAK 86 (755)
Q Consensus 8 ~v~~av~~ly~~-~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~ 86 (755)
+++|||.+...+ .|+..|+||-+|+++++.||.||++|.+++.... +++.+|||+.|||..+++..+++.+..++
T Consensus 4 diEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~t----s~d~vkf~clqtL~e~vrekyne~nl~el 79 (980)
T KOG2021|consen 4 DIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINET----SNDLVKFYCLQTLIELVREKYNEANLNEL 79 (980)
T ss_pred HHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhc----ccchhhhhhHHHHHHHHHHhhccCCHHHH
Confidence 689999998775 6999999999999999999999999999998763 46899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--c----CCChHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhh
Q 004414 87 DALLNALLVAAKRF--S----SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPE 158 (755)
Q Consensus 87 ~~Lr~~Ll~~l~~~--~----~~~~~v~~kL~~~la~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~E 158 (755)
..+|.+++.|+..- . .+|.+|+||+++.++.+++... .|++++.|+++.+..++ ...+...++++|..|..
T Consensus 80 qlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s-~~~~~dfflkvllaIds 158 (980)
T KOG2021|consen 80 QLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDS-AISGLDFFLKVLLAIDS 158 (980)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhccc-chhhHHHHHHHHHHhhh
Confidence 99999999999742 2 3588999999999999998765 69999999999997532 23468999999999999
Q ss_pred hcccccccccCCCH-HHHHHH-HHHHHh-chhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcc
Q 004414 159 EVIDSQASDCNISS-AHRSQY-GQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (755)
Q Consensus 159 E~~~~~~~~~~~~~-~~r~~~-~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~ 235 (755)
|+.|...+++ ++ .+|+.. .+.++. +++.+.+++-+++...... .++.+...+|+|+++|+. |++++
T Consensus 159 Eiad~dv~rT--~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~----~npgl~~~cLdc~g~fVS-----WIdIn 227 (980)
T KOG2021|consen 159 EIADQDVIRT--KEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI----VNPGLINSCLDCIGSFVS-----WIDIN 227 (980)
T ss_pred HhhhccccCC--hHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHhh-----hhhhh
Confidence 9998877653 33 345544 455665 6899999999988765432 245788999999999998 88999
Q ss_pred hhcccchHHHHHhhcCCCCcHHHHHHHHHHHhhcCCChhHHH-HH----hhhhhHHHhhhhhhcCCCHHHHhHHHHHHHH
Q 004414 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQAL-LC----RVPFLKELLLLPALTDGDEKVIGGLACLMSE 310 (755)
Q Consensus 236 ~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l-~~----~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~ 310 (755)
.++++++++++|+.|+.+++|.+|++|+.++++++++-...+ +- ++..+... .++.+++|.|+...++++++.
T Consensus 228 LIaNd~f~nLLy~fl~ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~--~s~dq~~d~df~e~vskLitg 305 (980)
T KOG2021|consen 228 LIANDYFLNLLYKFLNIEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGY--HSADQMDDLDFWESVSKLITG 305 (980)
T ss_pred hhhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhh--hccccccCchHHHHHHHHHhh
Confidence 999999999999999999999999999999999998754322 22 22222221 246677899999999999999
Q ss_pred HHHHhhHHHHh----cC--------hhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhh
Q 004414 311 IGQAAPSLIVE----AS--------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDM 378 (755)
Q Consensus 311 l~e~~~~~l~~----~~--------~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~ 378 (755)
+|.+......+ .. ......+.++++.+.+. +++++.-+++||+.....+-+. +...+.
T Consensus 306 ~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl--------~~ls~~ 375 (980)
T KOG2021|consen 306 FGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKL--------KALSSP 375 (980)
T ss_pred cceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhc--------ccccch
Confidence 99876555432 11 13467889999999995 5689999999999876655222 123344
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCCC--CCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHH---hhcCCCCCCC
Q 004414 379 FFSVFSALLDALLLRAQVDESSFNDD--GMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFG---SWGSANVPIP 453 (755)
Q Consensus 379 ~~~~~~~Ll~~l~~k~~~p~~~~~~~--~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~---~~~~~~~~~~ 453 (755)
.+..+.+++.++++|+.|++.-+.++ .++|+++.|.++|+++. .+++....+.++.++..+-+. ...+ .+..+
T Consensus 376 qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk-~fqdti~~idpsl~l~~Ir~slS~al~n-s~e~s 453 (980)
T KOG2021|consen 376 QKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLK-NFQDTIVVIDPSLFLNNIRQSLSAALMN-SKEES 453 (980)
T ss_pred hhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcch
Confidence 56667889999999999988754332 34467788999999996 777777888887555444332 2221 13467
Q ss_pred hhhhHHHHHHHHhhhhhcccc------CCccc---hHHHHHHH--HHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh
Q 004414 454 WKEVETKLFALNVVSEVVLQE------GQAFD---FSVIMQLV--AVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA 522 (755)
Q Consensus 454 W~~~EA~L~~l~~iae~~~~~------~~~~~---l~~i~~ll--~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~ 522 (755)
|+.+|+++|.++.+||+.+.+ ++... +..++.++ .+++.|+|+.. ++.+ +++|.||..||..
T Consensus 454 wqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lV----qLlf---mE~ivRY~kff~~ 526 (980)
T KOG2021|consen 454 WQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELV----QLLF---MELIVRYNKFFST 526 (980)
T ss_pred HHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHH----HHHH---HHHHHHHHHHHhc
Confidence 999999999999999998742 11110 11223322 24678888632 3555 7999999999999
Q ss_pred CccchHHHHHHHH--HhcccCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHh----------cCCChhhH
Q 004414 523 FQTNARPLLLFLA--AGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK----------RHLPLEDE 588 (755)
Q Consensus 523 ~p~~l~~~l~~l~--~~l~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~----------~~l~~~~~ 588 (755)
.++++|.++++++ +|++|.+ |+.+|++.|.++.+.-++.+. |+..+++..+...+.. ...+++++
T Consensus 527 esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlv-pfie~iln~iqdlL~~~vtt~N~~s~~lt~fddq 605 (980)
T KOG2021|consen 527 ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLV-PFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQ 605 (980)
T ss_pred chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCcCCCcCcccccccccccc
Confidence 9999999999998 6888854 999999999999999999886 5444566666665511 12357889
Q ss_pred HHHHHHHHHHHcc--CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhccccccc
Q 004414 589 EEVVGAISLILGS--VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVP 666 (755)
Q Consensus 589 ~~l~eai~~vi~~--~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~ 666 (755)
++++|++|.+|.. .|.|++ ..++..++.|++.+..-......-.+....|+...+.. ..+-.+ ++.-+++...
T Consensus 606 lyIfEtiGviI~l~n~paE~q-aay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~-~~lmai---g~lakgf~~r 680 (980)
T KOG2021|consen 606 LYIFETIGVIITLNNSPAELQ-AAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECH-HILMAI---GTLAKGFHIR 680 (980)
T ss_pred ceeeecceEEEeCCCCCHHHH-HHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHH-HHHHHH---HHHhhccccc
Confidence 9999999999864 788876 79999999999887655433321111122343322211 111122 3332333221
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHH
Q 004414 667 LPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTN 735 (755)
Q Consensus 667 ~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~ 735 (755)
. . +...-....++.++..++..++. .++..+.++.++...++|++.++|+...||+|..++++++.
T Consensus 681 l-v-t~~qvg~~~vf~~~ldvil~~ls-~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s 746 (980)
T KOG2021|consen 681 L-V-TENQVGNMVVFSNILDVILVTLS-FFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSS 746 (980)
T ss_pred C-c-chhcccHHHHHHHHHHHHHHHHh-hccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhc
Confidence 1 0 01122245667888888888887 48888999999999999999999999999999999999874
No 4
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-39 Score=333.52 Aligned_cols=611 Identities=17% Similarity=0.180 Sum_probs=417.7
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHH
Q 004414 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (755)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~ 85 (755)
.+|+.+.++.- .+||++.|+.++.-|.+|+.-|+--+|...+|..... .+..+|-.|...||+.++.+|...+.+.
T Consensus 12 l~ql~~lLk~s-~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~---~d~~~Rs~aGLlLKNnvr~~~~~~~~~~ 87 (885)
T KOG2023|consen 12 LQQLAQLLKNS-QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKS---EDVPTRSLAGLLLKNNVRGHYNSIPSEV 87 (885)
T ss_pred HHHHHHHHHhc-cCCChHHHHHHHHHHHHHhcccchhceeeEEEecccc---cchhHHHHhhhhHhccccccccCCChHH
Confidence 44455555552 3689999999999999999999999999999988763 5778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccc
Q 004414 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDS 163 (755)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~ 163 (755)
...+|..++..+. ..++.||+..+..+..++-... .||+.++.+.+.+.+. +.++.+-.+.-|..++|+...
T Consensus 88 ~~yiKs~~l~~lg---d~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~--d~n~~EgA~~AL~KIcEDsa~- 161 (885)
T KOG2023|consen 88 LDYIKSECLHGLG---DASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSP--DYNTCEGAFGALQKICEDSAQ- 161 (885)
T ss_pred HHHHHHHHHhhcc---CchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCC--cccccchhHHHHHHHHhhhHH-
Confidence 9999999988765 2456788888888888876654 7999999999999763 223334444445555544321
Q ss_pred cccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchH
Q 004414 164 QASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 (755)
Q Consensus 164 ~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll 243 (755)
..++... .+-+.-..+..++++.+ +++.++..+++|+..+|-.. +. .+.
T Consensus 162 -~lds~~~-------~rpl~~mipkfl~f~~h------------~spkiRs~A~~cvNq~i~~~-----~q------al~ 210 (885)
T KOG2023|consen 162 -FLDSDVL-------TRPLNIMIPKFLQFFKH------------PSPKIRSHAVGCVNQFIIIQ-----TQ------ALY 210 (885)
T ss_pred -HHhhhcc-------cCchHHhHHHHHHHHhC------------CChhHHHHHHhhhhheeecC-----cH------HHH
Confidence 0000000 11122234555555542 33567777887777665421 10 010
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcC
Q 004414 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS 323 (755)
Q Consensus 244 ~~~~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~ 323 (755)
..+|.+ .+.++..+ .++|+++.+++|+-++-+-|.++..+..
T Consensus 211 --------------~~iD~F---------------------le~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~p-- 252 (885)
T KOG2023|consen 211 --------------VHIDKF---------------------LEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVP-- 252 (885)
T ss_pred --------------HHHHHH---------------------HHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhccc--
Confidence 011111 11111113 6788999999999999999999888874
Q ss_pred hhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCC-
Q 004414 324 PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN- 402 (755)
Q Consensus 324 ~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~- 402 (755)
+...++++||..+..+ |++|+-.++|||..+++.- ...+...|++.+++++++.+|+|.+++..
T Consensus 253 -hl~~IveyML~~tqd~--dE~VALEACEFwla~aeqp------------i~~~~L~p~l~kliPvLl~~M~Ysd~D~~L 317 (885)
T KOG2023|consen 253 -HLDNIVEYMLQRTQDV--DENVALEACEFWLALAEQP------------ICKEVLQPYLDKLIPVLLSGMVYSDDDIIL 317 (885)
T ss_pred -chHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcCc------------CcHHHHHHHHHHHHHHHHccCccccccHHH
Confidence 4567999999999887 7889999999999999852 34567899999999999999999654210
Q ss_pred -----C-------------------------------CCC--CCCCchHHHH--HHHHhHHHHHHHHhcCcHHHHHHHHH
Q 004414 403 -----D-------------------------------DGM--VDLPDGLVQF--RMNLVELLVDICQLLRSATFIQKVFF 442 (755)
Q Consensus 403 -----~-------------------------------~~~--~d~~d~f~~~--R~~~~d~l~~~~~~l~~~~~l~~~~~ 442 (755)
+ ++| .||+|.|.++ |+--+..+.-...+.|.+ ++.+++.
T Consensus 318 L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~P 396 (885)
T KOG2023|consen 318 LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLP 396 (885)
T ss_pred hcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHH
Confidence 0 000 1122234433 544333444444556654 6777766
Q ss_pred HhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh
Q 004414 443 GSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA 522 (755)
Q Consensus 443 ~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~ 522 (755)
-+.. ...+..|..+||+++++|++||++.....+. +|.+..++..+.++-.+ .||..| ||+++||++|+..
T Consensus 397 lLk~-~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~-LpeLip~l~~~L~DKkp------lVRsIT-CWTLsRys~wv~~ 467 (885)
T KOG2023|consen 397 LLKE-HLSSEEWKVREAGVLALGAIAEGCMQGFVPH-LPELIPFLLSLLDDKKP------LVRSIT-CWTLSRYSKWVVQ 467 (885)
T ss_pred HHHH-HcCcchhhhhhhhHHHHHHHHHHHhhhcccc-hHHHHHHHHHHhccCcc------ceeeee-eeeHhhhhhhHhc
Confidence 5543 2345789999999999999999998754432 56666655555544443 367777 6999999999986
Q ss_pred Cc--cchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 004414 523 FQ--TNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (755)
Q Consensus 523 ~p--~~l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~v 598 (755)
.+ +++.+++..+++.+.| ++|+.+||.||..+-++....|. |++..+|.++..++..+ ..++-..+|+|||++
T Consensus 468 ~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLV-p~l~~IL~~l~~af~kY--Q~KNLlILYDAIgtl 544 (885)
T KOG2023|consen 468 DSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELV-PYLEYILDQLVFAFGKY--QKKNLLILYDAIGTL 544 (885)
T ss_pred CChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHHH--hhcceehHHHHHHHH
Confidence 43 6999999999998876 55999999999999999888886 54445667777777554 345678899999999
Q ss_pred HccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHH
Q 004414 599 LGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIF 678 (755)
Q Consensus 599 i~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~ 678 (755)
...+...--+..|++.++.|++++++.+-+...+ +.-.+.||+++-..++... .+...|+
T Consensus 545 Adsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd----------------LfPLLEClSsia~AL~~gF---~P~~~~V- 604 (885)
T KOG2023|consen 545 ADSVGHALNKPAYIQILMPPLIEKWELLSDSDKD----------------LFPLLECLSSIASALGVGF---LPYAQPV- 604 (885)
T ss_pred HHHHHHhcCcHHHHHHhccHHHHHHHhcCcccch----------------HHHHHHHHHHHHHHHhccc---cccCHHH-
Confidence 9887554333689999999999999997553321 2234667776666666432 1223333
Q ss_pred HHHHHHHHHHHHHHHh--hhcc-------chHHHHHHHHHHHHHHHHHhhhhHhhHH--HHHHHHHHHHhhcC---Cccc
Q 004414 679 ALLRVFWPMLEKLFRS--EHME-------NGNLSTAACRALSLAIQSSGQHFVTLLP--QVLDCLSTNFVSFQ---NHEC 744 (755)
Q Consensus 679 ~~~~~~~~~l~~i~~~--~~~~-------~~~v~e~~~~~~~~~~~~l~~~~~~~l~--~~~~~l~~~f~~~~---~~s~ 744 (755)
.+..+.++...++. +-.. +.+.+=.+..++...+..+|.++.|++. .+.+.+..++.--. +.||
T Consensus 605 --y~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~ 682 (885)
T KOG2023|consen 605 --YQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSA 682 (885)
T ss_pred --HHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHH
Confidence 34444444432221 1111 2233334678899999999999999884 57788887775421 2466
Q ss_pred e
Q 004414 745 Y 745 (755)
Q Consensus 745 ~ 745 (755)
|
T Consensus 683 F 683 (885)
T KOG2023|consen 683 F 683 (885)
T ss_pred H
Confidence 5
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-37 Score=342.14 Aligned_cols=606 Identities=17% Similarity=0.173 Sum_probs=438.9
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHH
Q 004414 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (755)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~ 85 (755)
++.+.+.++.|. +||+..|++|++.|+..-+++..-.....++.... ++++|.+||..+|..+.+.|..++++.
T Consensus 3 ~~~l~qLl~~l~-spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~-----~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 3 SAPLEQLLQQLL-SPDNEVRRQAEEALETLAKTEPLLPALAHILATSA-----DPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hhHHHHHHHHhc-CCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 467999999986 57999999999999966666556566666776654 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccc
Q 004414 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDS 163 (755)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~ 163 (755)
+..||.+||..+.+ ...+.||+|+|.++|.++-... .||+.++.++++.++. ++...+..+.+|..+|+-+++.
T Consensus 77 ~~siks~lL~~~~~--E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~--~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQS--ETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSP--NPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCC--CcchhHHHHHHHHhhhhhhccc
Confidence 99999999999886 4557899999999999997654 5999999999999874 5667899999999999998632
Q ss_pred cccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchH
Q 004414 164 QASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 (755)
Q Consensus 164 ~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll 243 (755)
+..+...+..++.+++..+++ .++..+++++.+.+.+. +.+ ....
T Consensus 153 ------------------~~~~~~~l~~lf~q~~~d~s~--------~vr~~a~rA~~a~~~~~-----~~~----~~~~ 197 (1075)
T KOG2171|consen 153 ------------------LQPHLDDLLRLFSQTMTDPSS--------PVRVAAVRALGAFAEYL-----ENN----KSEV 197 (1075)
T ss_pred ------------------cchhHHHHHHHHHHhccCCcc--------hHHHHHHHHHHHHHHHh-----ccc----hHHH
Confidence 123556788899999987643 39999999999998853 100 0000
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcC
Q 004414 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS 323 (755)
Q Consensus 244 ~~~~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~ 323 (755)
+.+..++|.++...+ ..++.+|.+........|.++.+..++++.
T Consensus 198 ----------------------------~~~~~llP~~l~vl~----~~i~~~d~~~a~~~l~~l~El~e~~pk~l~--- 242 (1075)
T KOG2171|consen 198 ----------------------------DKFRDLLPSLLNVLQ----EVIQDGDDDAAKSALEALIELLESEPKLLR--- 242 (1075)
T ss_pred ----------------------------HHHHHHhHHHHHHhH----hhhhccchHHHHHHHHHHHHHHhhchHHHH---
Confidence 123345666665433 245677888889999999999999999887
Q ss_pred hhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhc-cCCCCCC
Q 004414 324 PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQ-VDESSFN 402 (755)
Q Consensus 324 ~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~-~p~~~~~ 402 (755)
+++..++++.+.+.++..-|..+...+++|...+.++.. .......++..+|+.+++..|. ...|+.+
T Consensus 243 ~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap-----------~~~k~~~~~~~~lv~~~l~~mte~~~D~ew 311 (1075)
T KOG2171|consen 243 PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAP-----------AMCKKLALLGHTLVPVLLAMMTEEEDDDEW 311 (1075)
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhH-----------HHhhhchhhhccHHHHHHHhcCCcccchhh
Confidence 456789999999998876566788999999999888732 2223445556778887776554 2222111
Q ss_pred CCCCCCCCchHH-HHHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchH
Q 004414 403 DDGMVDLPDGLV-QFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS 481 (755)
Q Consensus 403 ~~~~~d~~d~f~-~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~ 481 (755)
.+.|+.|+|+++ .+|... ..+.....-+|++.++..+++.+.. ..++.+|..+.|+|.++++++||+.+.... .++
T Consensus 312 ~~~d~~ded~~~~~~~~A~-~~lDrlA~~L~g~~v~p~~~~~l~~-~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~ 388 (1075)
T KOG2171|consen 312 SNEDDLDEDDEETPYRAAE-QALDRLALHLGGKQVLPPLFEALEA-MLQSTEWKERHAALLALSVIAEGCSDVMIG-NLP 388 (1075)
T ss_pred ccccccccccccCcHHHHH-HHHHHHHhcCChhhehHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHH
Confidence 111222223322 233333 2455555568988877777765432 235788999999999999999999864322 268
Q ss_pred HHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHH-----hCccchHHHHHHHHHhcccCchHHHHHHHHHHHHH
Q 004414 482 VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS-----AFQTNARPLLLFLAAGISEAVSSNACASALRKICE 556 (755)
Q Consensus 482 ~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~-----~~p~~l~~~l~~l~~~l~~p~v~~~Aa~al~~l~~ 556 (755)
.|++++....++|++ .||+.+ |.+||+++.-|. .|++.+++.+-+++..-.+++|+.+||.|+.+|.+
T Consensus 389 ~Il~~Vl~~l~Dphp------rVr~AA-~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 389 KILPIVLNGLNDPHP------RVRYAA-LNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred HHHHHHHhhcCCCCH------HHHHHH-HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence 888888888899997 388887 699999997664 36677777777777777888999999999999999
Q ss_pred HhhcccCCCchHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004414 557 DASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSL 635 (755)
Q Consensus 557 ~c~~~l~~~~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~ 635 (755)
+|.+....| |++.|++ ....+. ..-+...++.++.+||++..+.... ..+|.++++ .-|.+++.+....+.
T Consensus 462 ~~~~~~l~p-YLd~lm~~~l~~L~-~~~~~~v~e~vvtaIasvA~AA~~~--F~pY~d~~M----p~L~~~L~n~~~~d~ 533 (1075)
T KOG2171|consen 462 ECDKSILEP-YLDGLMEKKLLLLL-QSSKPYVQEQAVTAIASVADAAQEK--FIPYFDRLM----PLLKNFLQNADDKDL 533 (1075)
T ss_pred hCcHHHHHH-HHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHhhh--hHhHHHHHH----HHHHHHHhCCCchhh
Confidence 999887654 8888777 444442 2336778999999999999764332 345555554 455555555442222
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 004414 636 IHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQ 715 (755)
Q Consensus 636 ~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~ 715 (755)
+. + ....+.|++.+-..++. .+..+..+++++++..+..+--..+....+....++.++.+
T Consensus 534 r~--------L--rgktmEcisli~~AVGk---------e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ 594 (1075)
T KOG2171|consen 534 RE--------L--RGKTMECLSLIARAVGK---------EKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCR 594 (1075)
T ss_pred HH--------H--HhhHHHHHHHHHHHhhh---------hhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHH
Confidence 11 1 12235666665443331 22344446666666655332123467788899999999999
Q ss_pred HHhhhhHhhHHHHHHHHHHHHhhc
Q 004414 716 SSGQHFVTLLPQVLDCLSTNFVSF 739 (755)
Q Consensus 716 ~l~~~~~~~l~~~~~~l~~~f~~~ 739 (755)
.+|++|.||+|.+++-+..+-...
T Consensus 595 ilg~~F~p~L~~Vmppl~~ta~~~ 618 (1075)
T KOG2171|consen 595 ILGDDFAPFLPVVMPPLLKTARLD 618 (1075)
T ss_pred HhchhhHhHHHHHhHHHHHhhccC
Confidence 999999999999999999876654
No 6
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=6.1e-35 Score=302.07 Aligned_cols=589 Identities=15% Similarity=0.208 Sum_probs=421.7
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHH
Q 004414 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (755)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~ 85 (755)
.+-+-+.|.++|. ++...++||++.|.+||..|+||+-+.++|+.+.. ++.+|.|.++|..-|+++|.-+|++.
T Consensus 13 iallDkVVttfyq-g~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~-----pqskyiALs~LdklIttkWkllp~~~ 86 (1053)
T COG5101 13 IALLDKVVTTFYQ-GDGRKQEQAQRILTKFQELPDAWTKADYILNNSKL-----PQSKYIALSLLDKLITTKWKLLPEGM 86 (1053)
T ss_pred HHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccC-----cchhhhHHHHHHHHHHhhhhhCCcHH
Confidence 4567788889995 57778999999999999999999999999998765 48999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 004414 86 KDALLNALLVAAKRFSS------GPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (755)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~------~~~~v~~kL~~~la~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (755)
+.+||+.+.+.+.+.++ ..+.+.+|+-.+|..++.+- | .||+++++++..-+. +-..++.-+.+|+.|.
T Consensus 87 r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~---s~~vCeNnmivLklLs 163 (1053)
T COG5101 87 RQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQI---SMEVCENNMIVLKLLS 163 (1053)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccc---hHHHHhccHHHHHHhH
Confidence 99999999998876553 23679999999999999875 4 799999999986654 3445677889999999
Q ss_pred hhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 004414 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (755)
Q Consensus 158 EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~ 237 (755)
||+.|...-. ++..+...+++.+...-+.+++++.++++...+ +++.+++|+.+..++. |+|.+.+
T Consensus 164 EEvFdfSaeq--mTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~-------~SLi~ATLesllrfl~-----wiPl~yI 229 (1053)
T COG5101 164 EEVFDFSAEQ--MTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRD-------ESLIEATLESLLRFLE-----WIPLDYI 229 (1053)
T ss_pred HHHHhccHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHh-----hCchhHH
Confidence 9997643211 344455566677788899999999999998653 5688888777766665 6677777
Q ss_pred cccchHHHHHhhcC-CCCcHHHHHHHHHHHhhcCC-----ChhHHHH----Hhhh------------hhHHHhhhhhhcC
Q 004414 238 AAHPLLNFVFNSLQ-VQSSFDVAIEVLVELVGRHE-----GLPQALL----CRVP------------FLKELLLLPALTD 295 (755)
Q Consensus 238 ~~~~ll~~~~~~L~-~~~~~~~a~~~l~eii~~~~-----~~~~~l~----~~~~------------~l~~~~~~~~~~~ 295 (755)
..+.+++++.+.+. .|+.+.++++|+.|+..-++ +..+.++ ..+. .+.+.|. ....
T Consensus 230 feTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~--~~~~ 307 (1053)
T COG5101 230 FETNIIELVLEHFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYG--GMDK 307 (1053)
T ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHc--ccCh
Confidence 77888888886554 58999999999999988542 1111111 1111 1111221 1223
Q ss_pred CCHHHHhHHHHHHHHHHHHhhHHHHhcC--hhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhc----chh--
Q 004414 296 GDEKVIGGLACLMSEIGQAAPSLIVEAS--PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGL----DAS-- 367 (755)
Q Consensus 296 ~d~e~~~~l~~l~~~l~e~~~~~l~~~~--~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~----~~~-- 367 (755)
.+.+++.+++.+++++.+.|...+.... ...+.-...++.+.... +.++...++++|..|.-.+++- +..
T Consensus 308 neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrIn--ereiFkt~leyW~klVadLy~E~q~lp~tem 385 (1053)
T COG5101 308 NEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRIN--EREIFKTALEYWNKLVADLYSEFQRLPATEM 385 (1053)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 4567899999999999999999886532 13345667788888885 6799999999999876555421 100
Q ss_pred ------------------hhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCC--CCCCC------CCCchHHHHHHHHh
Q 004414 368 ------------------IAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN--DDGMV------DLPDGLVQFRMNLV 421 (755)
Q Consensus 368 ------------------~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~--~~~~~------d~~d~f~~~R~~~~ 421 (755)
..+..+-+...|..++.+|.-+++.+|.-|++.+. +++.+ -|.|..+-|| .++
T Consensus 386 ~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYk-smR 464 (1053)
T COG5101 386 SPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYK-SMR 464 (1053)
T ss_pred CcchhccccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHH-HHh
Confidence 01112334556888899999999999999988442 11100 1223333343 445
Q ss_pred HHHHHHHHhcCcH--H-HHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHH---HHhccCch
Q 004414 422 ELLVDICQLLRSA--T-FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLV---AVLSASRS 495 (755)
Q Consensus 422 d~l~~~~~~l~~~--~-~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll---~~l~~~~~ 495 (755)
+++.+.....-.+ . ++..+...+. +...+|+.+....|++|+++...+++.+. ..+..++ ..+...-.
T Consensus 465 evLvyLthL~v~Dte~~mi~Klarq~d---g~EWsw~nlNtLcWAIGSISGamsE~~Ek---rF~VnviKdLL~LcemKr 538 (1053)
T COG5101 465 EVLVYLTHLIVDDTEKYMIGKLARQLD---GKEWSWNNLNTLCWAIGSISGAMSEVNEK---RFFVNVIKDLLALCEMKR 538 (1053)
T ss_pred hHHHHHhhhhhhhHHHHHHHHHHHHhc---CCccchhhHhHHHHHHhcccchhhhHHHH---HHHHHHHHHHHHHHHHhh
Confidence 5666665543222 2 2233322222 25678999999999999999888764431 2233333 22221100
Q ss_pred hhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhcccCCC--ch-HHH
Q 004414 496 EELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEP--SN-LEI 570 (755)
Q Consensus 496 ~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~l~~~--~~-~~~ 570 (755)
-..+. +|..+-+|.++|+|.+|+..|..||..++.-++..++. ..++..||..|.++.+.|+.++... .. .+.
T Consensus 539 gKdnK--AVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpF 616 (1053)
T COG5101 539 GKDNK--AVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPF 616 (1053)
T ss_pred cCCcc--hhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcH
Confidence 00011 46677778999999999999999999999999999984 5599999999999999999876431 11 344
Q ss_pred HHHHHHHHH--hcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccC
Q 004414 571 LMWIGEALE--KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGD 630 (755)
Q Consensus 571 l~~~~~~l~--~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~ 630 (755)
+..+.+.+. .+.+.+......|||.|.+|+..|........+-.+++-....+.++..++
T Consensus 617 I~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa 678 (1053)
T COG5101 617 IVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQA 678 (1053)
T ss_pred HHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 566666664 467788888899999999999999865545666666666666677765554
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-34 Score=301.60 Aligned_cols=601 Identities=14% Similarity=0.130 Sum_probs=419.2
Q ss_pred CCChHHHHHHHHHHHHHhcChHH--HHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHh-----------cccCCCChHH
Q 004414 19 DTESCNRVAANQWLVQFQQTDAA--WEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ-----------NEGYYLQSAA 85 (755)
Q Consensus 19 ~~d~~~~~qA~~~L~~fq~s~~a--w~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~-----------~~~~~l~~~~ 85 (755)
++|+..|++|+++|.++++++-+ -....+.|.+.+ .+...|.-|+.+|||-+. .+|.+++.|.
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~----~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~ 87 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDN----SSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEI 87 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccC----CcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHH
Confidence 68999999999999999988544 233444554443 468999999999999886 3599999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccc
Q 004414 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQA 165 (755)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~ 165 (755)
++++|+.++.+|...-..-.....|+..++|.+-+....||+++..+++.....++. ......|+.+++++|++..
T Consensus 88 reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~-~~k~~slealGyice~i~p--- 163 (859)
T KOG1241|consen 88 REQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQAS-MVKESSLEALGYICEDIDP--- 163 (859)
T ss_pred HHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccch-HHHHHHHHHHHHHHccCCH---
Confidence 999999999998742211123455555555555555557999999999999765422 3568899999999999831
Q ss_pred cccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHH
Q 004414 166 SDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNF 245 (755)
Q Consensus 166 ~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~ 245 (755)
+.+.+.++.++..+.+++.... ++..++.++++|+..-+.|... ++.- ...++.++++
T Consensus 164 --------------evl~~~sN~iLtaIv~gmrk~e------~s~~vRLaa~~aL~nsLef~~~-nF~~-E~ern~iMqv 221 (859)
T KOG1241|consen 164 --------------EVLEQQSNDILTAIVQGMRKEE------TSAAVRLAALNALYNSLEFTKA-NFNN-EMERNYIMQV 221 (859)
T ss_pred --------------HHHHHHHhHHHHHHHhhccccC------CchhHHHHHHHHHHHHHHHHHH-hhcc-Hhhhceeeee
Confidence 1467788999999988888765 3567999999999998887531 2222 2356789999
Q ss_pred HHhhcCCC--CcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcC
Q 004414 246 VFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS 323 (755)
Q Consensus 246 ~~~~L~~~--~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~ 323 (755)
+++..+.| +++.+|..|++.|++-|+++++.-...
T Consensus 222 vcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~------------------------------------------- 258 (859)
T KOG1241|consen 222 VCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ------------------------------------------- 258 (859)
T ss_pred eeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence 99998876 468899999999998876654321111
Q ss_pred hhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchh----hhhhhhh-hhhhhHHHHHHHHHHHHHHhcc-C
Q 004414 324 PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS----IAKNKKH-VEDMFFSVFSALLDALLLRAQV-D 397 (755)
Q Consensus 324 ~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~----~~~~~~~-~~~~~~~~~~~Ll~~l~~k~~~-p 397 (755)
.++..-+.-+.. .+++|+.+++|||.+++++-.++.-+ .+...+. ....-+.-+..+++++++.+.- +
T Consensus 259 ----alfaitl~amks--~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 259 ----ALFAITLAAMKS--DNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred ----HHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 111111111121 15689999999999998874332111 0001111 1222244567788999998864 5
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCc
Q 004414 398 ESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQA 477 (755)
Q Consensus 398 ~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~ 477 (755)
++..+|+|.. -+..|-+++=....+|++ +++++..-+.+ .-++++|+.+||+.++++++-++..+..-
T Consensus 333 e~~d~DdWnp---------~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee-~i~~pdwr~reaavmAFGSIl~gp~~~~L- 400 (859)
T KOG1241|consen 333 EDDDDDDWNP---------AKAAGVCLMLFAQCVGDD-IVPHVLPFIEE-NIQNPDWRNREAAVMAFGSILEGPEPDKL- 400 (859)
T ss_pred CCcccccCcH---------HHHHHHHHHHHHHHhccc-chhhhHHHHHH-hcCCcchhhhhHHHHHHHhhhcCCchhhh-
Confidence 5543344432 356677777777777765 56666544332 12568999999999999999998764322
Q ss_pred cchHHHHHHHHH---hccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh---CccchHHHHHHHHHhccc-CchHHHHHHH
Q 004414 478 FDFSVIMQLVAV---LSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGISE-AVSSNACASA 550 (755)
Q Consensus 478 ~~l~~i~~ll~~---l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~---~p~~l~~~l~~l~~~l~~-p~v~~~Aa~a 550 (755)
.+.+.+.++. +..+|.. .++.|+. |++||.++++.. |.+++.+.+..++.||.+ |++...+|+|
T Consensus 401 --t~iV~qalp~ii~lm~D~sl------~VkdTaA-wtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWA 471 (859)
T KOG1241|consen 401 --TPIVIQALPSIINLMSDPSL------WVKDTAA-WTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWA 471 (859)
T ss_pred --hHHHhhhhHHHHHHhcCchh------hhcchHH-HHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHH
Confidence 2444444333 3446653 4677764 999999998863 456899999999999997 9999999999
Q ss_pred HHHHHHHhhcccCC--------CchHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 004414 551 LRKICEDASALIDE--------PSNLEILMWIGEALEKRH-LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYE 621 (755)
Q Consensus 551 l~~l~~~c~~~l~~--------~~~~~~l~~~~~~l~~~~-l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~ 621 (755)
|..|++.|...... |+|.+++..+...-.... -..+-|...|++++-+|...|.+- .+.+..+..-++.
T Consensus 472 f~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~v--y~~v~~~~l~il~ 549 (859)
T KOG1241|consen 472 FISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDV--YPMVQKLTLVILE 549 (859)
T ss_pred HHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHH--HHHHHHHHHHHHH
Confidence 99999998754322 234444444443211111 134569999999999999988873 6889999999999
Q ss_pred HHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchH
Q 004414 622 AIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGN 701 (755)
Q Consensus 622 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~ 701 (755)
+|+++++..... ..+. .....|++.++. .|+.+.+.+.++ +..+.++++..+-++++ . +++.-
T Consensus 550 kl~q~i~~~~l~--~~dr-~q~~eLQs~Lc~--~Lq~i~rk~~~~----------~~~~~d~iM~lflri~~-s-~~s~~ 612 (859)
T KOG1241|consen 550 KLDQTISSQILS--LADR-AQLNELQSLLCN--TLQSIIRKVGSD----------IREVSDQIMGLFLRIFE-S-KRSAV 612 (859)
T ss_pred HHHHHHHHHhcc--HhhH-HHHHHHHHHHHH--HHHHHHHHcccc----------chhHHHHHHHHHHHHHc-C-Ccccc
Confidence 999999832211 0111 111234444433 466666655542 33556899999999998 3 67788
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhh
Q 004414 702 LSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVS 738 (755)
Q Consensus 702 v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~~ 738 (755)
+.|.+...+...+..+|++|..|+|.+.+.|..+.+.
T Consensus 613 v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n 649 (859)
T KOG1241|consen 613 VHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSN 649 (859)
T ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999988743
No 8
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.97 E-value=8.2e-27 Score=239.95 Aligned_cols=612 Identities=12% Similarity=0.081 Sum_probs=400.0
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChHH--HHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHh-----------
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAA--WEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ----------- 75 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~a--w~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~----------- 75 (755)
+.+..+.-.-+|||..|..|++.|.++++.+-. -.+..+.|...+ +.++.|..|+.+||+-+.
T Consensus 6 f~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~n----s~~~~Rm~agl~LKN~l~a~d~~~~~~~~ 81 (858)
T COG5215 6 FRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLN----SNDQLRMVAGLILKNSLHANDPELQKGCS 81 (858)
T ss_pred HHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccC----CcHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 444444411258999999999999999987654 123344444433 468999999999999886
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHH
Q 004414 76 NEGYYLQSAAKDALLNALLVAAKRFSSGPPQ--LLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (755)
Q Consensus 76 ~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~--v~~kL~~~la~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~lL~iL 153 (755)
.+|-.++.|.++++|...++.|.+. .|++ ...++..+||++.+....||+++.+++......+ ...+..-.|.++
T Consensus 82 qrW~~~~~E~k~qvK~~al~aL~s~--epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eq-p~~~k~~sl~~~ 158 (858)
T COG5215 82 QRWLGMRHESKEQVKGMALRALKSP--EPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQ-PVSGKCESLGIC 158 (858)
T ss_pred HhhccCCHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccC-chHhHHHHHHHH
Confidence 3599999999999999999988742 2332 4455555666666655689999999999887643 234566678888
Q ss_pred hhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccC
Q 004414 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (755)
Q Consensus 154 ~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~ 233 (755)
++.+|-.. + +.+.+.++.++..+...-..+. ++..++.++|+|+..-+.+... ++.
T Consensus 159 gy~ces~~----------P-------e~li~~sN~il~aiv~ga~k~e------t~~avRLaaL~aL~dsl~fv~~-nf~ 214 (858)
T COG5215 159 GYHCESEA----------P-------EDLIQMSNVILFAIVMGALKNE------TTSAVRLAALKALMDSLMFVQG-NFC 214 (858)
T ss_pred HHHhhccC----------H-------HHHHHHhhHHHHHHHHhhcccC------chHHHHHHHHHHHHHHHHHHHH-hhc
Confidence 88888652 1 2355556666555554444433 4567999999999875444321 222
Q ss_pred cchhcccchHHHHHhhcCCC--CcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHH
Q 004414 234 QGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEI 311 (755)
Q Consensus 234 ~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l 311 (755)
- ...++.+++++++.-+.+ ++.-+|..|++.|+.-|.++++...++.+
T Consensus 215 ~-E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL----------------------------- 264 (858)
T COG5215 215 Y-EEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL----------------------------- 264 (858)
T ss_pred c-hhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 2 234677899999888754 56778899999998877766554443322
Q ss_pred HHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchh--hhhhhh-hhhhhhHHHHHHHHH
Q 004414 312 GQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS--IAKNKK-HVEDMFFSVFSALLD 388 (755)
Q Consensus 312 ~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~--~~~~~~-~~~~~~~~~~~~Ll~ 388 (755)
..+..+.+..+ +++|+.++.|||..++++-.+.+-+ ..++.+ +....-+.-...+++
T Consensus 265 ------------------~alt~~~mks~--nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP 324 (858)
T COG5215 265 ------------------AALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLP 324 (858)
T ss_pred ------------------HHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHH
Confidence 22223334444 5689999999999988864221110 000001 011111233455677
Q ss_pred HHHHHhc-cCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhh
Q 004414 389 ALLLRAQ-VDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVV 467 (755)
Q Consensus 389 ~l~~k~~-~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~i 467 (755)
.+++.+. ..+|-..|+|.. -...+-+++--..+.|+ .+++.+..-.-. .-.+.+|+.+||+.++++++
T Consensus 325 ~lL~LL~~q~ed~~~DdWn~---------smaA~sCLqlfaq~~gd-~i~~pVl~FvEq-ni~~~~w~nreaavmAfGSv 393 (858)
T COG5215 325 ELLSLLEKQGEDYYGDDWNP---------SMAASSCLQLFAQLKGD-KIMRPVLGFVEQ-NIRSESWANREAAVMAFGSV 393 (858)
T ss_pred HHHHHHHhcCCCccccccch---------hhhHHHHHHHHHHHhhh-HhHHHHHHHHHH-hccCchhhhHHHHHHHhhhh
Confidence 7777664 345433344532 24455566655555554 456555432221 12567899999999999999
Q ss_pred hhhccccCCccchHHHHHHHHHhc---cCchhhhhhHHHHHHhHHHHHHHhhHHHHHh--Ccc-chHHHHHHHHHhccc-
Q 004414 468 SEVVLQEGQAFDFSVIMQLVAVLS---ASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQT-NARPLLLFLAAGISE- 540 (755)
Q Consensus 468 ae~~~~~~~~~~l~~i~~ll~~l~---~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~--~p~-~l~~~l~~l~~~l~~- 540 (755)
.++..+..- .+.+.+.++.+. ++|.. .+..||+ |++|+.++++.. +|+ ++++.+...+.|+.|
T Consensus 394 m~gp~~~~l---T~~V~qalp~i~n~m~D~~l------~vk~ttA-wc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~ 463 (858)
T COG5215 394 MHGPCEDCL---TKIVPQALPGIENEMSDSCL------WVKSTTA-WCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC 463 (858)
T ss_pred hcCccHHHH---HhhHHhhhHHHHHhccccee------ehhhHHH-HHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc
Confidence 988664321 134555555543 44432 4677885 999999999875 564 899999999999886
Q ss_pred CchHHHHHHHHHHHHHHhhccc------CCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHH
Q 004414 541 AVSSNACASALRKICEDASALI------DEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLAR 614 (755)
Q Consensus 541 p~v~~~Aa~al~~l~~~c~~~l------~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ 614 (755)
|.+...+++++.+|.+.-.+.. ..++|++++..+...-....-+++.|..+++++|.+|...|+.- .+.+..
T Consensus 464 p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V--~~~~a~ 541 (858)
T COG5215 464 PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAV--SDILAG 541 (858)
T ss_pred chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhH--HHHHHH
Confidence 8899999999999987654322 12345555555443321122245679999999999999888763 688889
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004414 615 LLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRS 694 (755)
Q Consensus 615 l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~ 694 (755)
+.+-+..+|.++++-.......++.. ..+.+++ ..+.-|..+.+....+. . ++-++++.++-++++.
T Consensus 542 ~~~~~~~kl~~~isv~~q~l~~eD~~-~~~elqS--N~~~vl~aiir~~~~~i-------e---~v~D~lm~Lf~r~les 608 (858)
T COG5215 542 FYDYTSKKLDECISVLGQILATEDQL-LVEELQS--NYIGVLEAIIRTRRRDI-------E---DVEDQLMELFIRILES 608 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHH--HHHHHHHHHHHhcCCCc-------c---cHHHHHHHHHHHHHhc
Confidence 99999999999987543211111111 0111221 11223445555444321 2 3347889999999984
Q ss_pred hhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhhc
Q 004414 695 EHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSF 739 (755)
Q Consensus 695 ~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~~~ 739 (755)
- +..-+.+.+...+..+..++|++|..|+|.+++.+.+..+++
T Consensus 609 -~-~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~ 651 (858)
T COG5215 609 -T-KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT 651 (858)
T ss_pred -c-CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch
Confidence 3 455667789999999999999999999999999999988764
No 9
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8e-20 Score=209.43 Aligned_cols=586 Identities=18% Similarity=0.175 Sum_probs=360.4
Q ss_pred HHHHHHHHHHHhccC-CChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCCh
Q 004414 5 LQIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (755)
Q Consensus 5 ~~~~v~~av~~ly~~-~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~ 83 (755)
...++..|+.+-+.+ ++...|.+|+++|.+||..+++|..|..+|+..+ ...++|||.+.|.+-|+.+|+.+|.
T Consensus 8 l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~-----~~~~k~f~Lqlle~vik~~W~~~~~ 82 (1041)
T KOG2020|consen 8 LDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLST-----NPILKYFALQLLENVIKFRWNSLPV 82 (1041)
T ss_pred HHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccC-----CchhheeeHHHHHHHHHHhcccCCc
Confidence 456677777775544 8889999999999999999999999999998874 4699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhcccCCCchhHHHHHHHhh
Q 004414 84 AAKDALLNALLVAAKRFSS------GPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (755)
Q Consensus 84 ~~~~~Lr~~Ll~~l~~~~~------~~~~v~~kL~~~la~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~ 155 (755)
+.+..+|+.++......+. ..+.+++||+..+..++.+- + .||++++++.+.... ++...+..+.+++.
T Consensus 83 ~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~---s~~~~el~m~Il~l 159 (1041)
T KOG2020|consen 83 EERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT---SETVCELSMIILLL 159 (1041)
T ss_pred cccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc---CcccchHHHHHHHH
Confidence 9999999999988765432 24679999999999999986 3 699999999998876 34567889999999
Q ss_pred hhhhcccccccccCCCHHHHHHHHHHHH-hchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCc
Q 004414 156 LPEEVIDSQASDCNISSAHRSQYGQELL-SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (755)
Q Consensus 156 l~EE~~~~~~~~~~~~~~~r~~~~~~l~-~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~ 234 (755)
|.||+.+..... + ..+|..+.+... .....+.++...+..... .. +..+++..+..++. |+|.
T Consensus 160 LsEdvf~~ss~~--~-~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~-------~~-~~~atl~tl~~fl~-----wip~ 223 (1041)
T KOG2020|consen 160 LSEEVFDFSSSE--L-TQQKIIILKNLLENEFQQIFTLCSYIKEKAN-------SE-LLSATLETLLRFLE-----WIPL 223 (1041)
T ss_pred HHHHHhcccchH--H-HhhhHHHHHHHhhHHHHHHHHHHHHHHhhhh-------hH-HHHHHHHHHHHHhh-----cccH
Confidence 999998654321 1 123333333322 233444555555444321 22 55556555554444 4555
Q ss_pred chhcccc-hHHHHHhhcCCCCcHHHHHHHHHHHhhcCCC--------hhHHH------HHhhhhhHHHhhhhhhcCCCH-
Q 004414 235 GSLAAHP-LLNFVFNSLQVQSSFDVAIEVLVELVGRHEG--------LPQAL------LCRVPFLKELLLLPALTDGDE- 298 (755)
Q Consensus 235 ~~~~~~~-ll~~~~~~L~~~~~~~~a~~~l~eii~~~~~--------~~~~l------~~~~~~l~~~~~~~~~~~~d~- 298 (755)
+.+..+. +-..+...++.++.+..|++|+.++++.... +.+.. ++..+.+.+.+. .....|.
T Consensus 224 ~~I~~tn~l~~~l~~~ln~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~--~~~~~dq~ 301 (1041)
T KOG2020|consen 224 GYIFETNILELLLNKFLNAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYS--SLSDEDQD 301 (1041)
T ss_pred HHHHHhhhHHHHHHhccchHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhh--cccHhHHH
Confidence 5544333 4445556666789999999999999987532 11111 112222222221 1223344
Q ss_pred HHHhHHHHHHHHHHHHhhHHHHhc----ChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcc----hhh--
Q 004414 299 KVIGGLACLMSEIGQAAPSLIVEA----SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD----ASI-- 368 (755)
Q Consensus 299 e~~~~l~~l~~~l~e~~~~~l~~~----~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~----~~~-- 368 (755)
...++++.+++.+++.|..++... +....++..+++..+-+| -++-..+++.|..+..+++..+ +..
T Consensus 302 ~fi~~l~~~l~~f~~~~~~lle~~~~~~~~~~~~~~~li~i~~~~~---se~~~~~ld~W~~lv~~l~~~~~~ll~~s~~ 378 (1041)
T KOG2020|consen 302 SFIEKLAQFLSLFFEQHIALLESSLSQRPVLLEALLELILISTIEP---SEIFKICLDYWNKLVADLYYNKPPLLQLSTT 378 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 678999999999999999999762 123345555555555554 3555569999999877654320 000
Q ss_pred ------hhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHH---------HHHhHHHHHHHHhcCc
Q 004414 369 ------AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFR---------MNLVELLVDICQLLRS 433 (755)
Q Consensus 369 ------~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R---------~~~~d~l~~~~~~l~~ 433 (755)
..+-+-....|..++.++--..+.+|.-|+....-+. +.-+.+++++ ..+.+.+...+..-+.
T Consensus 379 ~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~vlive~--~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~ 456 (1041)
T KOG2020|consen 379 LPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEEVLIVEN--EQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVV 456 (1041)
T ss_pred cccccchhccchHHHHHHHHHHHHHHHHHHHhcCchheeEEec--hHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhh
Confidence 0001122566778888888778888887776432100 1112222222 2223333332222111
Q ss_pred H--H-HHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCc-cchHHHHHHHHHhccCchhhhhhHHHHHHhHH
Q 004414 434 A--T-FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQA-FDFSVIMQLVAVLSASRSEELKGFMHIVYRSL 509 (755)
Q Consensus 434 ~--~-~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~-~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~ 509 (755)
. . ....+-..+. +.-..|..+.--++++++++....++... +-...+..++. +.+......+. ++...-+
T Consensus 457 ~t~~~~~~kl~~~l~---~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~-l~E~~~~kdn~--avi~~Ni 530 (1041)
T KOG2020|consen 457 DTEKIMTEKLAIQLD---GDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLN-LCERKRGKDNK--AVIASNI 530 (1041)
T ss_pred hhhhhhhHhHHHHhh---HHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHhhcCCch--hHHHHHH
Confidence 1 0 1111111111 12356888888999999877655432110 00011222221 11111100000 2333346
Q ss_pred HHHHHhhHHHHHhCccchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhccc--CCCchHH-HHHHHHHHHH--hcC
Q 004414 510 ADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALI--DEPSNLE-ILMWIGEALE--KRH 582 (755)
Q Consensus 510 ~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~l--~~~~~~~-~l~~~~~~l~--~~~ 582 (755)
+.++|.|-.|+..|..+|.++..-++..++. ..++..||..|.++...|..+. ..+.... ....+...+. ...
T Consensus 531 ~~vv~q~p~Fl~~h~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~ 610 (1041)
T KOG2020|consen 531 MYVVGQYPRFLKAHWKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITED 610 (1041)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcC
Confidence 8999999999999988999888888887763 5589999999999999998852 2111111 1112222211 244
Q ss_pred CChhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHHHHhhhc
Q 004414 583 LPLEDEEEVVGAISLILGS-VSNKELKNNLLARLLSSSYEAIGKLID 628 (755)
Q Consensus 583 l~~~~~~~l~eai~~vi~~-~p~~~~~~~~l~~l~~p~~~~l~~~~~ 628 (755)
+.+..+...++++|.++.+ .+++.. .++...+..-.-..+.+++.
T Consensus 611 l~~~q~~~~~~al~~~V~~~~~~~~~-~~~~~~~~vl~~~~~~nii~ 656 (1041)
T KOG2020|consen 611 LQPQQRHTFYEALGLMVSAEIDPAKA-ERLQSKLMVLPNRAWINIIL 656 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHhCCHhhH-HHHHhcccccchhhhcchhh
Confidence 5667788999999966655 333332 45555544433334444333
No 10
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2e-18 Score=190.24 Aligned_cols=627 Identities=14% Similarity=0.134 Sum_probs=363.9
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCC-------
Q 004414 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY------- 80 (755)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~------- 80 (755)
.+.+++.+-. .+||..|+.|++.|++++++|.--..+..+..... .+..||.-||.-|||+|.+.|..
T Consensus 5 ~l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~----~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~ 79 (1010)
T KOG1991|consen 5 SLLQIFRATI-DSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDG----VPLPVRQAAAIYLKNKITKSWSSHEAPGRP 79 (1010)
T ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccC----CchhHHHHHHHHHHHHHHhcCCccCCCCCc
Confidence 3666666644 46799999999999999999988888888887664 46889999999999999999974
Q ss_pred --CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-Hhc-ccCchHHHHHHHhhcccCCCchhHHHHHHHhhh
Q 004414 81 --LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALIL-RAV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVL 156 (755)
Q Consensus 81 --l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~-~~~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l 156 (755)
.+++++..+|+.++..+.+ +|..+|.++..++-.+.. .++ .||+.++.+-..++++. .......|-.|..|
T Consensus 80 ~~I~e~dk~~irenIl~~iv~---~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~--~~~vy~aLl~l~qL 154 (1010)
T KOG1991|consen 80 FGIPEEDKAVIRENILETIVQ---VPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQD--ANHVYGALLCLYQL 154 (1010)
T ss_pred CCCChHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcc--hhhHHHHHHHHHHH
Confidence 4789999999999999885 689999999999866654 455 79999999999998752 33444445555444
Q ss_pred hhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcch
Q 004414 157 PEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (755)
Q Consensus 157 ~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~ 236 (755)
..-- +. -..++|.-+...+....|.+++...+.+...+. +...+....+|.|.+-+.| ++|...
T Consensus 155 ~k~y---e~----k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~-----~s~el~klIlKifks~~~~----~LP~~L 218 (1010)
T KOG1991|consen 155 FKTY---EW----KKDEERQPLGEAVEELFPDILQIFNGLLSQESY-----QSVELQKLILKIFKSLIYY----ELPLEL 218 (1010)
T ss_pred HHHH---hh----ccccccccHHHHHHHHHHHHHHHHHhhccccch-----HHHHHHHHHHHHHHHHHHH----hCCHHh
Confidence 4211 10 123455556666666789999998888876532 3456889999999999887 567543
Q ss_pred hcccchHHHHHhhcCCCCcHHHHHHHHHHHhhcCC------------------ChhHHHHHhhhhhHHHhhhhhhc-CCC
Q 004414 237 LAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHE------------------GLPQALLCRVPFLKELLLLPALT-DGD 297 (755)
Q Consensus 237 ~~~~~ll~~~~~~L~~~~~~~~a~~~l~eii~~~~------------------~~~~~l~~~~~~l~~~~~~~~~~-~~d 297 (755)
.+++.+..=++.+..++.+.- +..++.+..+-.+.+++...... .+.
T Consensus 219 --------------~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y 284 (1010)
T KOG1991|consen 219 --------------SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEY 284 (1010)
T ss_pred --------------hCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhh
Confidence 233444444455555555431 01233333333444444321111 222
Q ss_pred HHHHhHHHHHHH-HHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhh
Q 004414 298 EKVIGGLACLMS-EIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVE 376 (755)
Q Consensus 298 ~e~~~~l~~l~~-~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~ 376 (755)
.++.+.+++-+. .+-+.+.+.+..- .. .+ =++..++.|-..+.+.. .. .+..+
T Consensus 285 ~~Fa~~f~~n~~~~ile~~lk~l~~~--------------~~-~~---yls~rvl~~~l~fl~~~--Vs------~~~tw 338 (1010)
T KOG1991|consen 285 KEFAQMFLKNFAQGILEVFLKILEQW--------------RQ-QL---YLSDRVLYYLLNFLEQC--VS------HASTW 338 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------Hh-cc---cCCHHHHHHHHHHHHHh--cc------HHHHH
Confidence 344444433222 2333333333210 00 00 01222222222222221 11 12456
Q ss_pred hhhHHHHHHHHH-HHHHHhccCCCCCCCCCCCCCCchHH--------HH---HHHHhHHHHHHHHhcCcHH------HHH
Q 004414 377 DMFFSVFSALLD-ALLLRAQVDESSFNDDGMVDLPDGLV--------QF---RMNLVELLVDICQLLRSAT------FIQ 438 (755)
Q Consensus 377 ~~~~~~~~~Ll~-~l~~k~~~p~~~~~~~~~~d~~d~f~--------~~---R~~~~d~l~~~~~~l~~~~------~l~ 438 (755)
...+|++.-++. +++..|.+.+.+. +.|+.| -.++- ++ |-...+++-.++.-=|.+. ++.
T Consensus 339 kll~PHl~~ii~~vIFPlmc~~d~de-elwe~D-P~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~ 416 (1010)
T KOG1991|consen 339 KLLKPHLQVIIQDVIFPLMCFNDEDE-ELWEED-PYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIV 416 (1010)
T ss_pred HHhhhHHHHHHHHhhhhhcCCCcccH-HHHhcC-HHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHH
Confidence 677888877774 4566666643322 234322 12211 11 1133455555554333331 222
Q ss_pred HHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHH-HHHH--hc--cCchhhhhhHHHHHHhHHHHHH
Q 004414 439 KVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQ-LVAV--LS--ASRSEELKGFMHIVYRSLADVI 513 (755)
Q Consensus 439 ~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~-ll~~--l~--~~~~~~~~~~~~v~~~t~~~~i 513 (755)
.++.+...++....+-++.|.||+.++++++.+.+. +. +...+. ++.+ +| +.|. | .+|.++ ||++
T Consensus 417 ~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~-s~--~~~~mE~flv~hVfP~f~s~~----g--~Lrara-c~vl 486 (1010)
T KOG1991|consen 417 DILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK-SP--YKSQMEYFLVNHVFPEFQSPY----G--YLRARA-CWVL 486 (1010)
T ss_pred HHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC-Cc--hHHHHHHHHHHHhhHhhcCch----h--HHHHHH-HHHH
Confidence 333332222223457999999999999999888753 22 233333 2222 22 3443 2 478887 6999
Q ss_pred HhhHHHHHhCccchHHHHHHHHHhcc-cCc--hHHHHHHHHHHHHHHhhcc---cCCCchHHHHHHHHHHHHhcCCChhh
Q 004414 514 GSYSKWISAFQTNARPLLLFLAAGIS-EAV--SSNACASALRKICEDASAL---IDEPSNLEILMWIGEALEKRHLPLED 587 (755)
Q Consensus 514 g~y~~~~~~~p~~l~~~l~~l~~~l~-~p~--v~~~Aa~al~~l~~~c~~~---l~~~~~~~~l~~~~~~l~~~~l~~~~ 587 (755)
++|++-=-.+|..+..++....++|. +++ |+.-||-|++.|...|... +. ++++.+++-.=.+. .....++
T Consensus 487 ~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~--~hvp~~mq~lL~L~-ne~End~ 563 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS--AHVPPIMQELLKLS-NEVENDD 563 (1010)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh--hhhhHHHHHHHHHH-HhcchhH
Confidence 99996333467788999999999998 444 8999999999999998854 32 24443332211221 1223444
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccC
Q 004414 588 EEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPL 667 (755)
Q Consensus 588 ~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~ 667 (755)
-..+++. +|...+.+ ..++--.+++-+.+..-++++...+.+...+... ..+...|..+.++...+.
T Consensus 564 Lt~vme~---iV~~fseE--lsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~-----iaA~GiL~Ti~Til~s~e--- 630 (1010)
T KOG1991|consen 564 LTNVMEK---IVCKFSEE--LSPFAVELCQNLAETFLKVLQTSEDEDESDDDKA-----IAASGILRTISTILLSLE--- 630 (1010)
T ss_pred HHHHHHH---HHHHHHHh--hchhHHHHHHHHHHHHHHHHhccCCCCccchHHH-----HHHHHHHHHHHHHHHHHh---
Confidence 4445544 45554444 3566777888888888888775332222111111 123444544555544443
Q ss_pred CCCCCCCch-HHHHH-HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhh
Q 004414 668 PTNPAGDDP-IFALL-RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVS 738 (755)
Q Consensus 668 ~~~~~~~~p-~~~~~-~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~~ 738 (755)
.|| +..-+ ..+.|++.-++.+ +-.++.|.+|.+... .+++-++..|-+=.+++.+.+.|.+
T Consensus 631 ------~~p~vl~~le~~~l~vi~~iL~~---~i~dfyeE~~ei~~~-~t~~~~~Isp~mW~ll~li~e~~~~ 693 (1010)
T KOG1991|consen 631 ------NHPEVLKQLEPIVLPVIGFILKN---DITDFYEELLEIVSS-LTFLSKEISPIMWGLLELILEVFQD 693 (1010)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhh-hhhhhcccCHHHHHHHHHHHHHHhh
Confidence 244 33222 3445566655553 335777776665544 3444444555555555566665554
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.3e-13 Score=144.77 Aligned_cols=617 Identities=13% Similarity=0.121 Sum_probs=329.7
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCC----
Q 004414 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY---- 80 (755)
Q Consensus 5 ~~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~---- 80 (755)
..+++.+.+..-. .|||+.|+-|++.|++.+..+.-=-....|+.++. .+.++|.-||..+|+.|+++|..
T Consensus 3 ~le~l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~----~d~~~r~aaav~fKN~iKr~W~~~~~~ 77 (960)
T KOG1992|consen 3 NLETLANYLLQTL-SPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQ----QDPQIRVAAAVYFKNYIKRNWIPAEDS 77 (960)
T ss_pred cHHHHHHHHHhcC-CCCCccCchHHHHHHHhccCCCchHHHHHHHhccC----cChhHHHHHHHHHHHHHHhccCcCCCC
Confidence 4566777777643 57899999999999999977532233455554442 47899999999999999999964
Q ss_pred ---CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-hc-ccCchHHHHHHHhhcccCCCchhHHHHHHHhh
Q 004414 81 ---LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (755)
Q Consensus 81 ---l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~-~~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~ 155 (755)
+.+++++.+|..++..+.+ .|..|..+|..+|+.++-+ +| .||+.++++++.+++. +-......|..
T Consensus 78 ~~~i~~~~~e~ikslIv~lMl~---s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~--D~~~~~gVL~t--- 149 (960)
T KOG1992|consen 78 PIKIIEEDREQIKSLIVTLMLS---SPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSG--DFNVINGVLVT--- 149 (960)
T ss_pred ccccchhHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcccc--chHHHHHHHHH---
Confidence 5667899999988876653 5678999999999999865 46 6999999999999863 22222222221
Q ss_pred hhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcc
Q 004414 156 LPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (755)
Q Consensus 156 l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~ 235 (755)
-..-+...+ ....+++--.+++..+...+.....++.+.++-..... .+ .. .+..|.+.
T Consensus 150 ahsiFkr~R--~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~---~~----~~---~l~~lf~v--------- 208 (960)
T KOG1992|consen 150 AHSIFKRYR--PEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHA---ND----AA---ALNILFGV--------- 208 (960)
T ss_pred HHHHHHhcC--cccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcc---cc----hh---HHHHHHHH---------
Confidence 111111111 00012233334444444455555666665554432110 01 11 34445441
Q ss_pred hhcccchHHHHHhhcCCC---CcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCH------HHHhHHHH
Q 004414 236 SLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDE------KVIGGLAC 306 (755)
Q Consensus 236 ~~~~~~ll~~~~~~L~~~---~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~------e~~~~l~~ 306 (755)
. -++.-+|..|+.. +-|+.=++... .. +.+.+. +.+....++++ +.-..+|.
T Consensus 209 l----ll~~klfysLn~QDiPEFFEdnm~~wM----------~~-F~k~l~----~~~p~le~~~ee~~~l~~lka~ICE 269 (960)
T KOG1992|consen 209 L----LLICKLFYSLNFQDIPEFFEDNMKTWM----------GA-FHKLLT----YDNPLLESDEEEATVLDKLKAQICE 269 (960)
T ss_pred H----HHHHHHHHhhhcccchHHHHhhHHHHH----------HH-HHHHHh----ccCcccccCcccccHHHHHHHHHHH
Confidence 0 1233344444432 22221111110 00 111111 01112222111 12235677
Q ss_pred HHHHHHHHhhHHHHhcChh-HHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHH--
Q 004414 307 LMSEIGQAAPSLIVEASPE-ALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVF-- 383 (755)
Q Consensus 307 l~~~l~e~~~~~l~~~~~~-~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-- 383 (755)
+++-..+.|-.-+..--++ ....+.++-..+.++.+| -....++.|.....+. ..|..+|
T Consensus 270 i~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD-~Lvs~Al~FLt~V~~r----------------~~y~~~F~~ 332 (960)
T KOG1992|consen 270 IFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYD-YLVSKALQFLTSVSRR----------------PHYAELFEG 332 (960)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHHHHHhh----------------hhhHhhhcc
Confidence 7766666554433321122 234556666666666332 2456778887665442 2233333
Q ss_pred HHHHHHHHHHhccCCCCCC--CCCC-CC----------CCchHHHHHHHHhHHHHHHHHhcCcH--HHHHHHHHHhhc--
Q 004414 384 SALLDALLLRAQVDESSFN--DDGM-VD----------LPDGLVQFRMNLVELLVDICQLLRSA--TFIQKVFFGSWG-- 446 (755)
Q Consensus 384 ~~Ll~~l~~k~~~p~~~~~--~~~~-~d----------~~d~f~~~R~~~~d~l~~~~~~l~~~--~~l~~~~~~~~~-- 446 (755)
.+.+..++++...|.-... |++. +| |..|-..-|+.+.|+++..|...... .++..-.+++.+
T Consensus 333 ~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y 412 (960)
T KOG1992|consen 333 ENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQY 412 (960)
T ss_pred hHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 4566666677766532111 0000 00 01122223455667887777655332 123322333332
Q ss_pred CCCCCCChhhhHHHHHHHHhhhhh-------ccccCCccchHHHH--HHHHHhcc---CchhhhhhHHHHHHhHHHHHHH
Q 004414 447 SANVPIPWKEVETKLFALNVVSEV-------VLQEGQAFDFSVIM--QLVAVLSA---SRSEELKGFMHIVYRSLADVIG 514 (755)
Q Consensus 447 ~~~~~~~W~~~EA~L~~l~~iae~-------~~~~~~~~~l~~i~--~ll~~l~~---~~~~~~~~~~~v~~~t~~~~ig 514 (755)
..+.+.+|...+.++|.+.+++-. +....+..++...+ ++++.+.+ .+++ .+++.++
T Consensus 413 ~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~p------ilka~aI----- 481 (960)
T KOG1992|consen 413 SKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFP------ILKADAI----- 481 (960)
T ss_pred ccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcccccc------chhhccc-----
Confidence 234677899999999999998733 32222211222211 12333332 2222 2444443
Q ss_pred hhHHHHHhC--ccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhc---ccCCCc-----hHHHHHHHHHHHHhcC
Q 004414 515 SYSKWISAF--QTNARPLLLFLAAGISEAV--SSNACASALRKICEDASA---LIDEPS-----NLEILMWIGEALEKRH 582 (755)
Q Consensus 515 ~y~~~~~~~--p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~---~l~~~~-----~~~~l~~~~~~l~~~~ 582 (755)
+|.--|.++ |+++...++-+.+.+.-+. |-.-||+++.++-.-|.+ .+.+|. ....+.++...+..+
T Consensus 482 Ky~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p- 560 (960)
T KOG1992|consen 482 KYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP- 560 (960)
T ss_pred ceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC-
Confidence 233223443 5688889999999988643 678899999888766655 332222 223344455443222
Q ss_pred CChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhccc
Q 004414 583 LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSH 662 (755)
Q Consensus 583 l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~ 662 (755)
...+..+++++|-++++.+++. +....++++..|.+++.....+ ..+|.-. .. ..+.++.+++.
T Consensus 561 -~~~EneylmKaImRii~i~~~~------i~p~~~~~l~~Lteiv~~v~KN--Ps~P~fn-HY------LFEsi~~li~~ 624 (960)
T KOG1992|consen 561 -GKAENEYLMKAIMRIISILQSA------IIPHAPELLRQLTEIVEEVSKN--PSNPQFN-HY------LFESIGLLIRK 624 (960)
T ss_pred -cccccHHHHHHHHHHHHhCHHh------hhhhhhHHHHHHHHHHHHHhcC--CCCchhH-HH------HHHHHHHHHHH
Confidence 2256889999999999876554 2334555566666665543221 1233221 11 12234444544
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhh----hhHhhHHHH
Q 004414 663 LPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ----HFVTLLPQV 728 (755)
Q Consensus 663 l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~----~~~~~l~~~ 728 (755)
... ..+.-+...-..+.|++..++.. +-.+++-.+..++.-.+...+. .+.|++|.+
T Consensus 625 t~~------~~~~~vs~~e~aL~p~fq~Il~e---DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~l 685 (960)
T KOG1992|consen 625 TCK------ANPSAVSSLEEALFPVFQTILSE---DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPL 685 (960)
T ss_pred Hhc------cCchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHh
Confidence 332 12233445567889999998874 2345666666666666665555 555555544
No 12
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.66 E-value=8.4e-16 Score=143.30 Aligned_cols=146 Identities=27% Similarity=0.399 Sum_probs=125.9
Q ss_pred ChHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHH
Q 004414 104 PPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQE 181 (755)
Q Consensus 104 ~~~v~~kL~~~la~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~ 181 (755)
|++|++|+|.+++.++.+. | .||++++++++.+++ ++.+...+|++|+.++||+.+.... .+...+|+.+.+.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~---~~~~~~~~L~iL~~l~eEi~~~~~~--~~~~~r~~~l~~~ 75 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS---SPQHLELVLRILRILPEEITDFRRS--SLSQERRRELKDA 75 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHTSHCC--HSHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHhhhch--hhhHHHHHHHHHH
Confidence 6889999999999999997 3 799999999999987 3567889999999999999863222 2667899999999
Q ss_pred HHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCCCcHHHHHH
Q 004414 182 LLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIE 261 (755)
Q Consensus 182 l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~ 261 (755)
+....+.|++++.++++...+. .+.++...+|+|+.+|+. |++.+.+.++++++.+|+.|.+++++++|+|
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~----~~~~~~~~~L~~l~s~i~-----~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~ 146 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSE----ANEELVKAALKCLKSWIS-----WIPIELIINSNLLNLIFQLLQSPELREAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHC----CHHHHHHHHHHHHHHHTT-----TS-HHHHHSSSHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc----cHHHHHHHHHHHHHHHHH-----hCCHHHhccHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999886532 126789999999999999 7888888888999999999999999999999
Q ss_pred HH
Q 004414 262 VL 263 (755)
Q Consensus 262 ~l 263 (755)
|+
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 96
No 13
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.3e-08 Score=110.07 Aligned_cols=635 Identities=13% Similarity=0.053 Sum_probs=305.0
Q ss_pred CCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCC-----ChHHHHHHHHHH
Q 004414 19 DTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL-----QSAAKDALLNAL 93 (755)
Q Consensus 19 ~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l-----~~~~~~~Lr~~L 93 (755)
.+|+..|+.|++.|.+++|.|.-...|..++.... .+.++|.-||.-+|+||.+.|... +.+.+...|..+
T Consensus 14 dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de----~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~l 89 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDE----GDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYL 89 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhcc----CCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHH
Confidence 46899999999999999999988888888887664 357999999999999999999863 345666666666
Q ss_pred HHHHHH-hcCCChHHHHHHHHHHHHHHHH-hc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccC
Q 004414 94 LVAAKR-FSSGPPQLLTQICLALSALILR-AV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCN 169 (755)
Q Consensus 94 l~~l~~-~~~~~~~v~~kL~~~la~l~~~-~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~ 169 (755)
++.+.. +-++|...|+.+...+..++-. ++ -|+ +.+.....+.++ +...+..+|..+..+. +.-+
T Consensus 90 ienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~--ea~~vy~gLlcl~elf----kayR---- 158 (970)
T COG5656 90 IENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSS--EANHVYTGLLCLEELF----KAYR---- 158 (970)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhccc--chhHHHHHHHHHHHHH----HHHh----
Confidence 665543 3356766776776555544322 12 266 666666666653 2333444444443222 2112
Q ss_pred CCHHHHHHHHHHHHhc-hhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHH---H
Q 004414 170 ISSAHRSQYGQELLSH-TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLN---F 245 (755)
Q Consensus 170 ~~~~~r~~~~~~l~~~-~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~---~ 245 (755)
..-..+++.+..+... -|.+.++=..+.. ..+. ...++...+|+.+.+.+-+ ++|........+.. +
T Consensus 159 wk~ndeq~di~~li~alfpile~~g~nl~s-~~ny----~s~e~l~LILk~fKsvcy~----~LP~~lsa~e~f~sw~ql 229 (970)
T COG5656 159 WKYNDEQVDILMLITALFPILEKVGGNLES-QGNY----GSVETLMLILKSFKSVCYY----SLPDFLSAIETFSSWFQL 229 (970)
T ss_pred hhccchHhhHHHHHHHhhHHHHHHhhcccc-CCch----hHHHHHHHHHHHHHHHHHh----hCCHHHccchhhHHHHHH
Confidence 2223344444444443 3333333332222 2221 2345777788888877765 45543322222222 2
Q ss_pred HHhhcCCCCcHHHHHHHHHHHhhcCC---ChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhc
Q 004414 246 VFNSLQVQSSFDVAIEVLVELVGRHE---GLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEA 322 (755)
Q Consensus 246 ~~~~L~~~~~~~~a~~~l~eii~~~~---~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~ 322 (755)
.+..++.| +-+..+..=-| +++.. +..++-+..+-.+.+++...........+...++..+..+-+.+.+.+..-
T Consensus 230 ~l~i~qkp-lp~evlsldpe-vRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~w 307 (970)
T COG5656 230 SLRILQKP-LPNEVLSLDPE-VRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEW 307 (970)
T ss_pred HHHHHcCC-CCHHHhccChh-hccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222211 00000000000 01111 111222222222222222111111112222333444444444444444321
Q ss_pred ChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCC
Q 004414 323 SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN 402 (755)
Q Consensus 323 ~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~ 402 (755)
++ | ..=.+...+-|...+.+.-. + .++.++...|++.-++...+--+-.+.++..
T Consensus 308 gq----------------g-qLWlsd~~LYfi~~Fve~cv--~------~d~tw~l~ePhlq~ii~~vIfPllc~see~e 362 (970)
T COG5656 308 GQ----------------G-QLWLSDIELYFIDFFVELCV--D------ADQTWRLMEPHLQYIISGVIFPLLCLSEEEE 362 (970)
T ss_pred hc----------------C-CeecchHHHHHHHHHHHHHh--h------hHhhHhhhccHHHHHHHhhhhhhcCCChhhH
Confidence 11 0 11133444555444444321 1 1245667778887666544333333333222
Q ss_pred CCCCCCCCchHHH-----H----HHHHhHH-HHHHHHhcCcHHHHHHHHH----HhhcCC-C-CC-CChhhhHHHHHHHH
Q 004414 403 DDGMVDLPDGLVQ-----F----RMNLVEL-LVDICQLLRSATFIQKVFF----GSWGSA-N-VP-IPWKEVETKLFALN 465 (755)
Q Consensus 403 ~~~~~d~~d~f~~-----~----R~~~~d~-l~~~~~~l~~~~~l~~~~~----~~~~~~-~-~~-~~W~~~EA~L~~l~ 465 (755)
+.|+.| .++|-+ | |-|++-. +.-.+..=+++..++-++. .+.++. + .+ .+-++.|.|++.+.
T Consensus 363 ElfEnD-p~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~la 441 (970)
T COG5656 363 ELFEND-PDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLA 441 (970)
T ss_pred HHHhcC-HHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHH
Confidence 223322 233221 1 1233211 1112222233333333322 222211 1 11 45889999999999
Q ss_pred hhhhhccccCCccchHHHHHH-HH-H-hc--cCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhccc
Q 004414 466 VVSEVVLQEGQAFDFSVIMQL-VA-V-LS--ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE 540 (755)
Q Consensus 466 ~iae~~~~~~~~~~l~~i~~l-l~-~-l~--~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~ 540 (755)
++..-+.+ +.+ +..+++. +. . +| ..+. + -++.++ |.++++|++-++. +..+..+.+...+++.+
T Consensus 442 si~s~itk-~sp--~an~me~fiv~hv~P~f~s~y----g--fL~Sra-ce~is~~eeDfkd-~~ill~aye~t~ncl~n 510 (970)
T COG5656 442 SIKSFITK-MSP--AANVMEYFIVNHVIPAFRSNY----G--FLKSRA-CEFISTIEEDFKD-NGILLEAYENTHNCLKN 510 (970)
T ss_pred HHHHHhcc-Cch--HHHHHHHHHHHHhhHhhcCcc----c--chHHHH-HHHHHHHHHhccc-chHHHHHHHHHHHHHhc
Confidence 99885543 332 3555552 22 2 12 2332 2 256666 7999999765543 44566667777777766
Q ss_pred Cc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 004414 541 AV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSS 618 (755)
Q Consensus 541 p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p 618 (755)
.. |+-.||-|+.-|..+-..+-.-..+.+..++-.-.+ ....+.+--..++|++ ++..+.+ ..++-..+.+.
T Consensus 511 n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsL-Sn~feiD~LS~vMe~f---Ve~fseE--Lspfa~eLa~~ 584 (970)
T COG5656 511 NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSL-SNTFEIDPLSMVMESF---VEYFSEE--LSPFAPELAGS 584 (970)
T ss_pred CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHh-cccccchHHHHHHHHH---HHHhHHh--hchhHHHHHHH
Confidence 33 788899999888755432211012333322222122 1222334344445443 3332222 13333334444
Q ss_pred HHHHHHhh----hccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004414 619 SYEAIGKL----IDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRS 694 (755)
Q Consensus 619 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~ 694 (755)
+.++.-++ +.+..+.+...+. . -..+...+..+.++.-++.- .+....-.-+.+.|+++-++.+
T Consensus 585 Lv~qFlkiaq~l~ens~d~~s~vDD-K----qmaasGiL~T~~smiLSlen-------~p~vLk~le~slypvi~Filkn 652 (970)
T COG5656 585 LVRQFLKIAQSLLENSSDTSSVVDD-K----QMAASGILRTIESMILSLEN-------RPLVLKYLEVSLYPVISFILKN 652 (970)
T ss_pred HHHHHHHHHHHHHcCCccccccccH-H----HHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHHHhh
Confidence 44433223 3333211111111 1 01223333334444333331 2222233446789999999875
Q ss_pred hhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhh
Q 004414 695 EHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVS 738 (755)
Q Consensus 695 ~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~~ 738 (755)
+-.++...+|.++....-.. ....|-.+.+.+.+......
T Consensus 653 ---~i~dfy~Ea~dildg~tf~s-keI~pimwgi~Ell~~~l~~ 692 (970)
T COG5656 653 ---EISDFYQEALDILDGYTFMS-KEIEPIMWGIFELLLNLLID 692 (970)
T ss_pred ---hHHHHHHHHHHHHhhhhHHH-HHhhhhhhHHHHHHHhcccc
Confidence 35677777777776544333 33447777777777664433
No 14
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=6.1e-08 Score=103.49 Aligned_cols=295 Identities=14% Similarity=0.136 Sum_probs=194.9
Q ss_pred chHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCC
Q 004414 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (755)
Q Consensus 3 ~~~~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~ 82 (755)
|+..++++..-..||.+.|+..|.+|++-|.+|..+|+.-+-|..||...+. +..+..|+..|-..+.+. ..+|
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~-----pYs~mlAst~L~Klvs~~-t~lp 74 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSY-----PYSQMLASTCLMKLVSRK-TPLP 74 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-----chHHHHHHHHHHHHHcCC-CCCc
Confidence 4578899999999999999999999999999999999999999999988765 488999999996666543 5799
Q ss_pred hHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHhccc----------CchHHHHHHHhhcccCCCchhHHHHH
Q 004414 83 SAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVEH----------GKPIEKLFYSLQNLQSQDNGNMAVLE 151 (755)
Q Consensus 83 ~~~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~W----------~~~i~~li~~~~~~~~~~~~~~~lL~ 151 (755)
-+++..||+.+++++.... .-+++|...||+.+|.+-.. +| .+++.++...++.+ +.....+.+.
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~--gW~d~~k~~y~FRd~v~~~~kfl~~~--~ve~~~igv~ 150 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKL--GWFDQQKDEYVFRDPVDDVTKFLQMD--NVEHCIIGVQ 150 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhc--cccccccccchhhhhHHHHHHHhccC--chHHHHHHHH
Confidence 9999999999999998632 13468999999999988754 33 24555555555542 4567889999
Q ss_pred HHhhhhhhcccccccccCCCHHHHHHHHHHHHh-chhHHHHHHHHhhhcccCCCCCcc-hh----hhHHHHHHHHH-HHH
Q 004414 152 MLTVLPEEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQ-LH----DRNRKILRCLL-SWV 224 (755)
Q Consensus 152 iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~-~~----~l~~~~l~c~~-sWi 224 (755)
+|..+..|+...... .+..+++++...++. .--+|+.+-.+.+....+-++... .. .+...+++|+. .+|
T Consensus 151 iLsqLvqemN~~~~~---~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfi 227 (1082)
T KOG1410|consen 151 ILSQLVQEMNQADGM---DPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFI 227 (1082)
T ss_pred HHHHHHHHhhCCCCC---CcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccc
Confidence 999999998644332 344455555555554 335566655555555432222111 11 23344555553 112
Q ss_pred Hhc--------cccccCcc---hhcccchHHHHHhhcCC--CCcHHHHHHHHHHHhhcCC---------ChhHHHHHhhh
Q 004414 225 RAG--------CFTEISQG---SLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHE---------GLPQALLCRVP 282 (755)
Q Consensus 225 ~~~--------~~~~~~~~---~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~eii~~~~---------~~~~~l~~~~~ 282 (755)
.-. |...+|.+ .+..+..++..|+..++ +++.+.|++|++.+-+-.+ .|.+.++.++.
T Consensus 228 Gss~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk 307 (1082)
T KOG1410|consen 228 GSSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVK 307 (1082)
T ss_pred ccccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 100 00023322 12346678888988875 6789999999998866432 24556666555
Q ss_pred hhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHH
Q 004414 283 FLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (755)
Q Consensus 283 ~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~ 314 (755)
.+.+ + .-.-.|.+....+||++.-+-.+
T Consensus 308 ~il~---n-p~~LsD~~nyHeFCRllaRlktN 335 (1082)
T KOG1410|consen 308 RILE---N-PQGLSDPANYHEFCRLLARLKTN 335 (1082)
T ss_pred HHHh---C-CcCCCCcchHHHHHHHHHHHHhh
Confidence 4322 1 11223555566677776654433
No 15
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.48 E-value=3.4e-09 Score=116.96 Aligned_cols=499 Identities=14% Similarity=0.093 Sum_probs=256.3
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCC-------
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL------- 81 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l------- 81 (755)
+.+.+.... ++|+..|.+|+.-|.++-.+++--....++..+.. .+...|.+|+..|+.-|.++|...
T Consensus 6 ii~~L~~~l-s~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~----~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 6 IIELLSGSL-SADQNVRSQAETQLKQLELTEGFGVALAEVAANKD----ASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred HHHHHHhhc-CCChhHHHHHHHHHhccccchHHHHHHHHHHhCcc----cCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 444454443 68999999999999999988874333444444332 357899999999999999999753
Q ss_pred ---ChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HHhc-ccCchHHHHHHHhhcccCCCchhHHHHHHHhhh
Q 004414 82 ---QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALI-LRAV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVL 156 (755)
Q Consensus 82 ---~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~-~~~~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l 156 (755)
+++.+..||+.|++.+. ..++.+++-.+.+++.++ ..+| .||+.++-++..++++ +.++....+++|..+
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~---~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~--n~n~i~~am~vL~el 155 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLD---DSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSG--NENSIHGAMRVLAEL 155 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhh---ccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhcc--chhhhhhHHHHHHHH
Confidence 55788999999998776 456778888998888886 4566 6999999999999863 445555667777666
Q ss_pred hhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcch
Q 004414 157 PEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (755)
Q Consensus 157 ~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~ 236 (755)
-.|+.+.. +....+.++.-+..+...... .+...+..+.+
T Consensus 156 ~~ev~~ee-----------------~~~~~~~~l~~m~~~f~~~~~-----~s~~~~~~aa~------------------ 195 (1005)
T KOG2274|consen 156 SDEVDVEE-----------------MFFVGPVSLAEMYRIFALTIV-----YSIITRLGAAR------------------ 195 (1005)
T ss_pred HHHHHHHH-----------------Hhcccccchhhhhhhhhhccc-----cchhHHHHhhh------------------
Confidence 66653110 000111111111111000000 00011111100
Q ss_pred hcccchHHHHHhhcCC-CCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHh
Q 004414 237 LAAHPLLNFVFNSLQV-QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAA 315 (755)
Q Consensus 237 ~~~~~ll~~~~~~L~~-~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~ 315 (755)
-+++..++..+.+ ++...... ..++..+++..+....... ..-...|.-....+.+.++.+++.+
T Consensus 196 ---~~lf~sc~~li~~~~e~~~~~~----------~~~~s~~l~~~~~~l~h~l-~~~~g~~~~~~~eilk~~t~l~~nf 261 (1005)
T KOG2274|consen 196 ---GKLFTSCLTLITNVEEVWAEHV----------KVFLSQILNQFMDILEHPL-QRNDGSDFSLRMEILKCLTQLVENF 261 (1005)
T ss_pred ---hHHHHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhh-cccccchHHHHHHHHHHHHHHHHhh
Confidence 0111111111110 00000000 0123333333332211111 0111223344566778888888888
Q ss_pred hHHHHhc-----Chh---HHHHHH-HHHhcccCCCCCcch--------------hhhcHHHHHHHHHHhhhcchhhhhhh
Q 004414 316 PSLIVEA-----SPE---ALALAD-ALLSCVAFPSEDWEI--------------ADSTLQFWSTLASYILGLDASIAKNK 372 (755)
Q Consensus 316 ~~~l~~~-----~~~---~~~ll~-~ll~~~~~p~~d~~v--------------~~~~~~FW~~l~~~l~~~~~~~~~~~ 372 (755)
+..+..- +.. ...... .+..-..+.+.+++. .-..++|-..+..... ...
T Consensus 262 p~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~-~~~------ 334 (1005)
T KOG2274|consen 262 PSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRF-LSK------ 334 (1005)
T ss_pred HHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHH-HHH------
Confidence 7776432 110 011111 111112221111111 1245566666555321 111
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhccCC----------CCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHH
Q 004414 373 KHVEDMFFSVFSALLDALLLRAQVDE----------SSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFF 442 (755)
Q Consensus 373 ~~~~~~~~~~~~~Ll~~l~~k~~~p~----------~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~ 442 (755)
.... .+..++..++.-++.++ ..+. +++| +. ..-|..+.|.+..+..-.|.+. +..+++
T Consensus 335 -ti~~----~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV--~dEd--~~-~~~~~~~rd~~~~v~~~f~~~~-i~~i~~ 403 (1005)
T KOG2274|consen 335 -TIKK----NLPELIYQLVAYLQLSEEQIEVWTSDVNQFV--ADED--DG-YTARISVRDLLLEVITTFGNEG-INPIQD 403 (1005)
T ss_pred -Hhhh----hhHHHHHHHHHHHHhhHHHHHHHhccHHHhh--ccCC--CC-chhhhhHHHHHHHHHHhccchh-hhHHHH
Confidence 1111 11122222222222222 1221 2111 11 4447778888888777776542 222322
Q ss_pred H----hhc-----CCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHH-hccCchhhhhhHHHHHHhHHHHH
Q 004414 443 G----SWG-----SANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAV-LSASRSEELKGFMHIVYRSLADV 512 (755)
Q Consensus 443 ~----~~~-----~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~-l~~~~~~~~~~~~~v~~~t~~~~ 512 (755)
. +.. ..+.+..|-.-||++++..+++.+... .+. +..+...+.. +..+..|. +..++ +++
T Consensus 404 a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~-dd~--l~~l~~~~~~~l~~~e~P~------Ll~Ra-~~~ 473 (1005)
T KOG2274|consen 404 AAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDAN-DDK--LIELTIMIDNGLVYQESPF------LLLRA-FLT 473 (1005)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcch-HHH--HHHHHHHHHhhcccccCHH------HHHHH-HHH
Confidence 1 111 012345699999999999988843221 111 2333333333 32222221 22344 599
Q ss_pred HHhhHHHHHhCccchHHHHHHHHHhccc--Cc-hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHH
Q 004414 513 IGSYSKWISAFQTNARPLLLFLAAGISE--AV-SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEE 589 (755)
Q Consensus 513 ig~y~~~~~~~p~~l~~~l~~l~~~l~~--p~-v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~ 589 (755)
++.|++=+..+|+++...++..++++.- |. ++.+|+++|...| +.++..| ..+.++.....+. .+-+.+...
T Consensus 474 i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~-~~p~ild~L~qla-s~~s~evl~ 548 (1005)
T KOG2274|consen 474 ISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLS-LQPMILDGLLQLA-SKSSDEVLV 548 (1005)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---Cceeccc-cchHHHHHHHHHc-ccccHHHHH
Confidence 9988887667899888888888887764 22 5666666665555 5444322 4444444333321 223556778
Q ss_pred HHHHHHHHHHccCCc
Q 004414 590 EVVGAISLILGSVSN 604 (755)
Q Consensus 590 ~l~eai~~vi~~~p~ 604 (755)
.++|+++.++.--|.
T Consensus 549 llmE~Ls~vv~~dpe 563 (1005)
T KOG2274|consen 549 LLMEALSSVVKLDPE 563 (1005)
T ss_pred HHHHHHHHHhccChh
Confidence 899999999876554
No 16
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.2e-07 Score=103.50 Aligned_cols=123 Identities=22% Similarity=0.190 Sum_probs=102.6
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccC-----CCCh
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY-----YLQS 83 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~-----~l~~ 83 (755)
|.+.++... ++|+..++-|++.|++..+.|.-.....++..+.+ .+..+|..|+.-+|+-|.+.|. .+|+
T Consensus 2 vvq~Lq~At-s~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t----~dv~vRWmAviyfKNgIdryWR~~~~~sl~~ 76 (978)
T KOG1993|consen 2 VVQVLQQAT-SQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKT----NDVSVRWMAVIYFKNGIDRYWRRNTKMSLPP 76 (978)
T ss_pred HHHHHHHhc-CCCcccchhHHHHHHhhccCCcHHHHHHHHHhccc----cceeeeeehhhhHhcchhHHhhcCCcccCCH
Confidence 344455543 67999999999999999999988888778776654 4689999999999999999986 5899
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HHhc-ccCchHHHHHHHhhcc
Q 004414 84 AAKDALLNALLVAAKRFSSGPPQLLTQICLALSALI-LRAV-EHGKPIEKLFYSLQNL 139 (755)
Q Consensus 84 ~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~-~~~~-~W~~~i~~li~~~~~~ 139 (755)
|++..||..|+.+.. ..+..+..|.++.+|.+| +.+| .||+.+++++..+++.
T Consensus 77 EEK~~iR~~Ll~~~~---E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~ 131 (978)
T KOG1993|consen 77 EEKDFIRCNLLLHSD---EENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSS 131 (978)
T ss_pred HHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHh
Confidence 999999999988765 355678889999999998 4566 7999999999999864
No 17
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.87 E-value=6.2e-09 Score=84.63 Aligned_cols=67 Identities=33% Similarity=0.375 Sum_probs=62.0
Q ss_pred HHHHHHHHhcC-hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccC--------CCChHHHHHHHHHHHHHHH
Q 004414 28 ANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY--------YLQSAAKDALLNALLVAAK 98 (755)
Q Consensus 28 A~~~L~~fq~s-~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~--------~l~~~~~~~Lr~~Ll~~l~ 98 (755)
|+++|++|+++ |+.|..+..++.+.+ .+.++|+||+.+||++|+++|. .+|++++..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~----~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNS----QDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 899999999996653 3689999999999999999999 9999999999999999875
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=0.0027 Score=73.72 Aligned_cols=442 Identities=15% Similarity=0.162 Sum_probs=225.5
Q ss_pred hhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCC--CcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHH
Q 004414 210 HDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKEL 287 (755)
Q Consensus 210 ~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~ 287 (755)
++++.+.-+.+..-.+. .+|. ..+.+++.+|++.+++ ..++.|+-.+..+.+--..-.+ +.+-.+...
T Consensus 94 ~~vr~k~~dviAeia~~----~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~---~~~~~l~~l 163 (1075)
T KOG2171|consen 94 PSVRHKLADVIAEIARN----DLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ---PHLDDLLRL 163 (1075)
T ss_pred hHHHHHHHHHHHHHHHh----cccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc---hhHHHHHHH
Confidence 45777766666666653 2333 5778999999999864 6788888777655442211111 111111111
Q ss_pred hhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcC---hhHHHHHHHHHh----cccCCCCCcchhhhcHHHHHHHHHH
Q 004414 288 LLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS---PEALALADALLS----CVAFPSEDWEIADSTLQFWSTLASY 360 (755)
Q Consensus 288 ~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~---~~~~~ll~~ll~----~~~~p~~d~~v~~~~~~FW~~l~~~ 360 (755)
|. +.+++.+.-+...-++.+.+++...- ++. ..+..+++-++. +... | |.+.+..+|+-...|.+.
T Consensus 164 f~-q~~~d~s~~vr~~a~rA~~a~~~~~~----~~~~~~~~~~~llP~~l~vl~~~i~~-~-d~~~a~~~l~~l~El~e~ 236 (1075)
T KOG2171|consen 164 FS-QTMTDPSSPVRVAAVRALGAFAEYLE----NNKSEVDKFRDLLPSLLNVLQEVIQD-G-DDDAAKSALEALIELLES 236 (1075)
T ss_pred HH-HhccCCcchHHHHHHHHHHHHHHHhc----cchHHHHHHHHHhHHHHHHhHhhhhc-c-chHHHHHHHHHHHHHHhh
Confidence 21 24444333343344555555554332 111 123344443333 3333 2 456677888876666653
Q ss_pred hhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHh----cCc-HH
Q 004414 361 ILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQL----LRS-AT 435 (755)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~----l~~-~~ 435 (755)
. ...++|++..++...+.-..=. +. + +..|..+-+++-.+... .+- ..
T Consensus 237 ~--------------pk~l~~~l~~ii~~~l~Ia~n~--~l--------~---~~~R~~ALe~ivs~~e~Ap~~~k~~~~ 289 (1075)
T KOG2171|consen 237 E--------------PKLLRPHLSQIIQFSLEIAKNK--EL--------E---NSIRHLALEFLVSLSEYAPAMCKKLAL 289 (1075)
T ss_pred c--------------hHHHHHHHHHHHHHHHHHhhcc--cc--------c---HHHHHHHHHHHHHHHHhhHHHhhhchh
Confidence 2 2357888888888776543211 01 1 23365555554433221 110 01
Q ss_pred HHHHHHHHhhc---CCCCCCChhh------------hHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhh
Q 004414 436 FIQKVFFGSWG---SANVPIPWKE------------VETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKG 500 (755)
Q Consensus 436 ~l~~~~~~~~~---~~~~~~~W~~------------~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~ 500 (755)
+...++..+.. .......|-. --++.-++-.+|-.+.. +.. ++.+++.++.+..++....
T Consensus 290 ~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g--~~v-~p~~~~~l~~~l~S~~w~~-- 364 (1075)
T KOG2171|consen 290 LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG--KQV-LPPLFEALEAMLQSTEWKE-- 364 (1075)
T ss_pred hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh--hhe-hHHHHHHHHHHhcCCCHHH--
Confidence 22223222111 0001122432 12344455555555542 222 6888888888776665432
Q ss_pred HHHHHHhHHHHHHHhhHHHHHh-CccchHHHHHHHHHhcccC--chHHHHHHHHHHHHHHhhcccCCCchHHHHH-HHHH
Q 004414 501 FMHIVYRSLADVIGSYSKWISA-FQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILM-WIGE 576 (755)
Q Consensus 501 ~~~v~~~t~~~~ig~y~~~~~~-~p~~l~~~l~~l~~~l~~p--~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~-~~~~ 576 (755)
|..+ +..|+..++=-.+ --..|+++++++++++.|| +|+.+|+.|+-.+..+-...+.. .+-+.+. .+..
T Consensus 365 ----R~Aa-L~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk-~~~e~l~~aL~~ 438 (1075)
T KOG2171|consen 365 ----RHAA-LLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK-KHHERLPPALIA 438 (1075)
T ss_pred ----HHHH-HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH-HHHHhccHHHHH
Confidence 3443 3555555431111 1137899999999999985 59999999999999876654421 1111111 1111
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhh
Q 004414 577 ALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRM 656 (755)
Q Consensus 577 ~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L 656 (755)
.+. ..-....+.+..-++-......+.+.. .+|+..++++. +.-+.+... |.. . ...+..|
T Consensus 439 ~ld-~~~~~rV~ahAa~al~nf~E~~~~~~l-~pYLd~lm~~~---l~~L~~~~~-------~~v-~------e~vvtaI 499 (1075)
T KOG2171|consen 439 LLD-STQNVRVQAHAAAALVNFSEECDKSIL-EPYLDGLMEKK---LLLLLQSSK-------PYV-Q------EQAVTAI 499 (1075)
T ss_pred Hhc-ccCchHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHH---HHHHhcCCc-------hhH-H------HHHHHHH
Confidence 111 111122222222222222233344432 45555555443 333333221 100 1 1122233
Q ss_pred hhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHh-hhhHhhHHHHHHHHHH
Q 004414 657 GTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEH-MENGNLSTAACRALSLAIQSSG-QHFVTLLPQVLDCLST 734 (755)
Q Consensus 657 ~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~-~~~~~v~e~~~~~~~~~~~~l~-~~~~~~l~~~~~~l~~ 734 (755)
+.+-.. ...++.++++.+||.+..++++.- .+...+.-++..++.-+-+..| +.|.|+-.++++.+..
T Consensus 500 asvA~A----------A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~ 569 (1075)
T KOG2171|consen 500 ASVADA----------AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLE 569 (1075)
T ss_pred HHHHHH----------HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHh
Confidence 443221 124477889999999999998521 1122344467789999999999 5799999999998887
Q ss_pred H
Q 004414 735 N 735 (755)
Q Consensus 735 ~ 735 (755)
.
T Consensus 570 ~ 570 (1075)
T KOG2171|consen 570 L 570 (1075)
T ss_pred h
Confidence 4
No 19
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=98.44 E-value=0.0069 Score=68.63 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=93.7
Q ss_pred chHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCC--
Q 004414 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY-- 80 (755)
Q Consensus 3 ~~~~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~-- 80 (755)
|+..+.|.++-.+ .++||..++.|++-|++..+.++ ++..|+.-..+ .+.+...|.-|+.-+|+-|.++|.+
T Consensus 1 M~~~~vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~g---F~~kL~~I~~~-~~~~m~lR~~a~i~fkn~I~~~W~~~~ 74 (947)
T COG5657 1 MEDLPVVKQLDLA--QSPDPPSVKCAEERLRQWEKQHG---FALKLLSINLS-AFNSMSLRWAALIQFKNYIDKHWREEN 74 (947)
T ss_pred CCchHHHHHHHhh--cCCCCchHhhHHHHHHhhhcccc---HHHHHHHHHhc-cccchhHHHHHHHHHHhhHHHHhhhhc
Confidence 3355545554444 36788899999999999999886 34444433221 1256899999999999999999975
Q ss_pred ---CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HHhc-ccCchHHHHHHHhhc
Q 004414 81 ---LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALI-LRAV-EHGKPIEKLFYSLQN 138 (755)
Q Consensus 81 ---l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~-~~~~-~W~~~i~~li~~~~~ 138 (755)
+.+++...+|..++..+.+ .+....-|.+.+++.++ +.+| .||..++|+.+.++.
T Consensus 75 ~~~i~p~e~v~IR~~l~~lii~---s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~ 134 (947)
T COG5657 75 GNSILPDENVLIRDELFSLIIS---SSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSE 134 (947)
T ss_pred ccCCCCccchHHHHHHHHHHHc---ccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcc
Confidence 4556666999999988775 33334447788888887 4456 799999999999986
No 20
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.027 Score=61.66 Aligned_cols=217 Identities=14% Similarity=0.141 Sum_probs=120.8
Q ss_pred hHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHH-HHHhCccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHH
Q 004414 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSK-WISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICE 556 (755)
Q Consensus 480 l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~-~~~~~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~ 556 (755)
++.++.++.....++. + -+|.+++ -.+|..++ -...--.+|+.+++|+++.|.++. |++-.|..+.++..
T Consensus 391 L~~l~PlLk~~L~~~~--W----~vrEagv-LAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 391 LPILLPLLKEHLSSEE--W----KVREAGV-LALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred HHHHHHHHHHHcCcch--h----hhhhhhH-HHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 3455555554333332 3 2677776 88999886 223334689999999999999844 89999999998875
Q ss_pred HhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004414 557 DASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLI 636 (755)
Q Consensus 557 ~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~ 636 (755)
---..-...++.+.+..+...+... ..+.|+....|.+.+.....++ . .++++.++.-++-.++..-...
T Consensus 464 wv~~~~~~~~f~pvL~~ll~~llD~--NK~VQEAAcsAfAtleE~A~~e-L-Vp~l~~IL~~l~~af~kYQ~KN------ 533 (885)
T KOG2023|consen 464 WVVQDSRDEYFKPVLEGLLRRLLDS--NKKVQEAACSAFATLEEEAGEE-L-VPYLEYILDQLVFAFGKYQKKN------ 533 (885)
T ss_pred hHhcCChHhhhHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHhccch-h-HHHHHHHHHHHHHHHHHHhhcc------
Confidence 4322111112334444555443222 2345666666666665443333 2 5666666666665555542211
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 004414 637 HNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQS 716 (755)
Q Consensus 637 ~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~ 716 (755)
|..+- +.++++-.+.+... .+| .+++.++|-+.+--+. ..++.-=.=-+..|+..+..+
T Consensus 534 ---------LlILY---DAIgtlAdsvg~~L------n~~--~YiqiLmPPLi~KW~~-lsd~DKdLfPLLEClSsia~A 592 (885)
T KOG2023|consen 534 ---------LLILY---DAIGTLADSVGHAL------NKP--AYIQILMPPLIEKWEL-LSDSDKDLFPLLECLSSIASA 592 (885)
T ss_pred ---------eehHH---HHHHHHHHHHHHhc------CcH--HHHHHhccHHHHHHHh-cCcccchHHHHHHHHHHHHHH
Confidence 11122 22333322222111 122 3356666654443331 333322223467888999999
Q ss_pred HhhhhHhhHHHHHHHHHH
Q 004414 717 SGQHFVTLLPQVLDCLST 734 (755)
Q Consensus 717 l~~~~~~~l~~~~~~l~~ 734 (755)
+|+.|.||.+++.+.-..
T Consensus 593 L~~gF~P~~~~Vy~Rc~~ 610 (885)
T KOG2023|consen 593 LGVGFLPYAQPVYQRCFR 610 (885)
T ss_pred HhccccccCHHHHHHHHH
Confidence 999999999888654433
No 21
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.27 E-value=0.0022 Score=68.29 Aligned_cols=201 Identities=13% Similarity=0.203 Sum_probs=104.0
Q ss_pred HHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhh--HHHHHHHHH-HHHHHhccCCCCC--
Q 004414 327 LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMF--FSVFSALLD-ALLLRAQVDESSF-- 401 (755)
Q Consensus 327 ~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~Ll~-~l~~k~~~p~~~~-- 401 (755)
..+++++......+.+ +.+...++.|...+.+.. .....| +|.+.+++. +++.-|.+.+++.
T Consensus 140 ~~vw~lL~~~~~~~~~-D~lv~~al~FL~~v~~~~------------~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~El 206 (370)
T PF08506_consen 140 QAVWNLLTKISQQPKY-DILVSKALQFLSSVAESP------------HHKNLFENKPHLQQIIEKVIFPNLCLREEDEEL 206 (370)
T ss_dssp HHHHHHHTC--SSGGG-HHHHHHHHHHHHHHHTSH------------HHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHH
T ss_pred HHHHHHHHHhhhcccc-cHHHHHHHHHHHHHHcch------------hHHHHhCCHHHHHHHHHHhccCccCCCHHHHHH
Confidence 3566666665555432 245667888876554421 111222 577777776 5566777644321
Q ss_pred -CCC------CCCCCCchHHHHHHHHhHHHHHHHHhcCcH------HHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhh
Q 004414 402 -NDD------GMVDLPDGLVQFRMNLVELLVDICQLLRSA------TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVS 468 (755)
Q Consensus 402 -~~~------~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~------~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~ia 468 (755)
.|+ -+-| ..|+..-|..+.|+++..+.--+.. .+++.+++.... +.+.+|+..++|++.+++++
T Consensus 207 fEddP~EYIrrd~e-~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~--~~~~~w~~KD~Al~Li~ala 283 (370)
T PF08506_consen 207 FEDDPEEYIRRDLE-GSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYAS--NPSNNWRSKDGALYLIGALA 283 (370)
T ss_dssp HHHSHHHHHHHHSC-SS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTT-HHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHhhcc-ccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh--CCcccHHHHHHHHHHHHHHH
Confidence 111 0112 2456666788889998887653322 122223322222 24568999999999999998
Q ss_pred hhccc--cCCc--cchHHHHHHH-----HHhc-cCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhc
Q 004414 469 EVVLQ--EGQA--FDFSVIMQLV-----AVLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGI 538 (755)
Q Consensus 469 e~~~~--~~~~--~~l~~i~~ll-----~~l~-~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l 538 (755)
..... .+-. ..+-.+.+++ +.+. +.... +.++..+ |+.+..|-.-+ .++.+..+++.+++.|
T Consensus 284 ~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~-----piLka~a-ik~~~~Fr~~l--~~~~l~~~~~~l~~~L 355 (370)
T PF08506_consen 284 SKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSH-----PILKADA-IKFLYTFRNQL--PKEQLLQIFPLLVNHL 355 (370)
T ss_dssp BSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S------HHHHHHH-HHHHHHHGGGS---HHHHHHHHHHHHHHT
T ss_pred hhhccccCCcccccccccHHHHHHHHhHHHhcccCCCC-----cchHHHH-HHHHHHHHhhC--CHHHHHHHHHHHHHHh
Confidence 54431 1100 0011233322 2222 11111 1255554 58777776543 3568889999999999
Q ss_pred ccCc--hHHHHHHHH
Q 004414 539 SEAV--SSNACASAL 551 (755)
Q Consensus 539 ~~p~--v~~~Aa~al 551 (755)
.++. |..-||.|+
T Consensus 356 ~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 356 QSSSYVVHTYAAIAI 370 (370)
T ss_dssp TSS-HHHHHHHHHHH
T ss_pred CCCCcchhhhhhhhC
Confidence 9877 566676654
No 22
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.39 Score=57.98 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=96.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCc------HHHHHHHHHHhhcCC
Q 004414 375 VEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS------ATFIQKVFFGSWGSA 448 (755)
Q Consensus 375 ~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~------~~~l~~~~~~~~~~~ 448 (755)
..+...|++.+|++.+.+ -+||++ ..+.+.+.++...+-. +.|+..++..+..+
T Consensus 988 a~~kl~p~l~kLIPrLyR-Y~yDP~------------------~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~- 1047 (1702)
T KOG0915|consen 988 AGEKLEPYLKKLIPRLYR-YQYDPD------------------KKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN- 1047 (1702)
T ss_pred HHHhhhhHHHHhhHHHhh-hccCCc------------------HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh-
Confidence 345678999999999875 677766 2344555555554322 23666777665431
Q ss_pred CCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHH---HhccCchhhhhhHHHHHHhH--HHHHHHhhHHHHH--
Q 004414 449 NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA---VLSASRSEELKGFMHIVYRS--LADVIGSYSKWIS-- 521 (755)
Q Consensus 449 ~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~---~l~~~~~~~~~~~~~v~~~t--~~~~ig~y~~~~~-- 521 (755)
.++..||-+||+..|+.-+-.+-+.++- .+.++.+.. ...++-+.. ||..+ ++..+++.+-=+.
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~~---~e~lpelw~~~fRvmDDIKEs------VR~aa~~~~~~lsKl~vr~~d~ 1118 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQV---KEKLPELWEAAFRVMDDIKES------VREAADKAARALSKLCVRICDV 1118 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHHH---HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhccc
Confidence 2456799999999999988766432211 133333333 233333321 22111 1345554442221
Q ss_pred hCc----cchHHHHHHHH-Hhccc--CchHHHHHHHHHHHHHHhhcccC
Q 004414 522 AFQ----TNARPLLLFLA-AGISE--AVSSNACASALRKICEDASALID 563 (755)
Q Consensus 522 ~~p----~~l~~~l~~l~-~~l~~--p~v~~~Aa~al~~l~~~c~~~l~ 563 (755)
.|+ +.+..+|+|++ .|+.. +++++.+-..+.++.+..++.+.
T Consensus 1119 ~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk 1167 (1702)
T KOG0915|consen 1119 TNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK 1167 (1702)
T ss_pred CCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc
Confidence 233 57888899988 34443 56888889999999999888775
No 23
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=1.2 Score=49.31 Aligned_cols=314 Identities=12% Similarity=0.143 Sum_probs=164.0
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHH---HHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCC
Q 004414 377 DMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRM---NLVELLVDICQLLRSATFIQKVFFGSWGSANVPIP 453 (755)
Q Consensus 377 ~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~---~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 453 (755)
..+.|++..+++.++.+.- | . -+.-|. +..+.+++|...-+...++...+..+.. ..
T Consensus 208 ~~~EPyiv~~lp~il~~~~-------d---~-----~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~-----~k 267 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFG-------D---K-----INKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE-----AK 267 (569)
T ss_pred CCCCchHHhhHHHHHHHhh-------c---c-----chhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH-----Hh
Confidence 4567777888888776531 1 0 012243 3344555555544445566666665543 26
Q ss_pred hhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHH
Q 004414 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLF 533 (755)
Q Consensus 454 W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~ 533 (755)
||...|++..++++++..+..=+ ..++.+...+....-+.++ -+|.++. .++-+|++.+. ||+ +.+.++-
T Consensus 268 WrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~------evr~a~~-~~l~~~~svid-N~d-I~~~ip~ 337 (569)
T KOG1242|consen 268 WRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKP------EVRKAGI-ETLLKFGSVID-NPD-IQKIIPT 337 (569)
T ss_pred hhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCH------HHHHHHH-HHHHHHHHhhc-cHH-HHHHHHH
Confidence 99999999999999988764211 0134444433333334444 2677775 99999999764 677 8899999
Q ss_pred HHHhcccCc-hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHH
Q 004414 534 LAAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGE-ALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNL 611 (755)
Q Consensus 534 l~~~l~~p~-v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~-~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~ 611 (755)
++.++.||. -...+..++.. ..--..+ .++.++.+.-+.. .+. ..+...+...+.-++....-.++.+.
T Consensus 338 Lld~l~dp~~~~~e~~~~L~~--ttFV~~V-~~psLalmvpiL~R~l~--eRst~~kr~t~~IidNm~~LveDp~~---- 408 (569)
T KOG1242|consen 338 LLDALADPSCYTPECLDSLGA--TTFVAEV-DAPSLALMVPILKRGLA--ERSTSIKRKTAIIIDNMCKLVEDPKD---- 408 (569)
T ss_pred HHHHhcCcccchHHHHHhhcc--eeeeeee-cchhHHHHHHHHHHHHh--hccchhhhhHHHHHHHHHHhhcCHHH----
Confidence 999999997 33444343321 1111122 2345555554443 222 12333445556666666666655543
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhh-hcccccccCC----CCCCCCc------hH---
Q 004414 612 LARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGT-VFSHLPVPLP----TNPAGDD------PI--- 677 (755)
Q Consensus 612 l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~-~f~~l~~~~~----~~~~~~~------p~--- 677 (755)
+..++.-++..++..+.... |.............+.+++. -|.+..+-.. ....... -+
T Consensus 409 lapfl~~Llp~lk~~~~d~~-------PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~ev 481 (569)
T KOG1242|consen 409 LAPFLPSLLPGLKENLDDAV-------PEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEV 481 (569)
T ss_pred HhhhHHHHhhHHHHHhcCCC-------hhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHH
Confidence 44555556677777766542 21111111111233444443 2333322100 0000000 00
Q ss_pred -----HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHh
Q 004414 678 -----FALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFV 737 (755)
Q Consensus 678 -----~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~ 737 (755)
......++|-+..-..+ ...++.+.+-..-++.-.=...|.++.||+-.+++.+.+.-.
T Consensus 482 l~~~~v~~~~~~~~~~~a~~~~-~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~a 545 (569)
T KOG1242|consen 482 LAGLGVEKVEDILPEILANASS-VLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLA 545 (569)
T ss_pred HhcccchHHHHHHHHHHHHHhh-ccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhh
Confidence 11223344433333331 222334445444555555557778888888888777776543
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.62 E-value=2.1 Score=49.63 Aligned_cols=162 Identities=13% Similarity=0.061 Sum_probs=95.2
Q ss_pred CCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh-Cc-----
Q 004414 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQ----- 524 (755)
Q Consensus 451 ~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~-~p----- 524 (755)
+.+--.+||-.|..++++...++.-... ++.+...+..-...|.. .+-+-+ +.+.++|.+.+.. +|
T Consensus 490 sss~~ki~~L~fl~~~L~s~~p~~fhp~-~~~Ls~~v~~aV~d~fy------KisaEA-L~v~~~lvkvirpl~~~~~~d 561 (1233)
T KOG1824|consen 490 SSSNLKIDALVFLYSALISHPPEVFHPH-LSALSPPVVAAVGDPFY------KISAEA-LLVCQQLVKVIRPLQPPSSFD 561 (1233)
T ss_pred chHHHHHHHHHHHHHHHhcCChhhcccc-hhhhhhHHHHHhcCchH------hhhHHH-HHHHHHHHHHhcccCCCccCC
Confidence 3456678998888888876544332211 23333333332334443 244555 4788888888753 22
Q ss_pred --cchHHHHHHHHHhcc----cCchHHHHHHHHHHHHHHhhcccCCCchHH-HHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 004414 525 --TNARPLLLFLAAGIS----EAVSSNACASALRKICEDASALIDEPSNLE-ILMWIGEALEKRHLPLEDEEEVVGAISL 597 (755)
Q Consensus 525 --~~l~~~l~~l~~~l~----~p~v~~~Aa~al~~l~~~c~~~l~~~~~~~-~l~~~~~~l~~~~l~~~~~~~l~eai~~ 597 (755)
.+..++....++.|. |.+|+.+|-.++-.+.......+.+ .++ .|..+.+.+. ..-.|...++|++.
T Consensus 562 ~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~--eL~~~L~il~eRl~----nEiTRl~AvkAlt~ 635 (1233)
T KOG1824|consen 562 ASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGN--ELPRTLPILLERLG----NEITRLTAVKALTL 635 (1233)
T ss_pred CChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHh----chhHHHHHHHHHHH
Confidence 366777777776665 4569999999888887776665543 333 3333444442 23468999999998
Q ss_pred HHccCCchHHHHHHHHHHHHHHHHHHHhhh
Q 004414 598 ILGSVSNKELKNNLLARLLSSSYEAIGKLI 627 (755)
Q Consensus 598 vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~ 627 (755)
|+.+.-.-. +.+.+..++.-+...+.+..
T Consensus 636 Ia~S~l~i~-l~~~l~~il~~l~~flrK~~ 664 (1233)
T KOG1824|consen 636 IAMSPLDID-LSPVLTEILPELASFLRKNQ 664 (1233)
T ss_pred HHhccceee-hhhhHHHHHHHHHHHHHHHH
Confidence 876522211 13456666666666665543
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.54 E-value=2.3 Score=49.24 Aligned_cols=298 Identities=13% Similarity=0.130 Sum_probs=145.3
Q ss_pred HHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 004414 43 EIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA 122 (755)
Q Consensus 43 ~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~ 122 (755)
++...|+....+ .+-..||.|..-|-+.++++--.|+.+.-.-+-.-|++.|.. .+.-|.+--..+++-++-..
T Consensus 5 ~~~i~Llekmts---sDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D---~ngEVQnlAVKClg~lvsKv 78 (1233)
T KOG1824|consen 5 QVGINLLEKMTS---SDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED---KNGEVQNLAVKCLGPLVSKV 78 (1233)
T ss_pred HHHHHHHHHccC---CCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHhhc
Confidence 334455554432 456899999999999999998888888777777777777763 22335444444566555332
Q ss_pred c--ccCchHHHHHHHhhcccCC--CchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhh
Q 004414 123 V--EHGKPIEKLFYSLQNLQSQ--DNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSD 198 (755)
Q Consensus 123 ~--~W~~~i~~li~~~~~~~~~--~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~ 198 (755)
. .-...++.+...+-++..+ ......+......+|--.++ ...+.|+.-+...+.
T Consensus 79 ke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~---------------------~la~tV~~~~t~~l~ 137 (1233)
T KOG1824|consen 79 KEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSS---------------------FLAATVCKRITPKLK 137 (1233)
T ss_pred hHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccc---------------------ccccHHHHHHHHHHH
Confidence 2 1122333333332111100 00111122222222221110 012333333333332
Q ss_pred cccCCCCCcchhhhHHHHHHHHHHHHH-hccccccCcchhcccchHHHHHhhcCCCC--cHHHHHHHHHHHhhcCC-Chh
Q 004414 199 KRFDGGVPVQLHDRNRKILRCLLSWVR-AGCFTEISQGSLAAHPLLNFVFNSLQVQS--SFDVAIEVLVELVGRHE-GLP 274 (755)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~l~c~~sWi~-~~~~~~~~~~~~~~~~ll~~~~~~L~~~~--~~~~a~~~l~eii~~~~-~~~ 274 (755)
...+.. .+...++-.+++-+.-.+. ||. +-.+ ....++..+...|..+. ++..|+-++..+..... +..
T Consensus 138 ~~i~~q--e~~sai~~e~lDil~d~lsr~g~---ll~~--fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly 210 (1233)
T KOG1824|consen 138 QAISKQ--EDVSAIKCEVLDILADVLSRFGT---LLPN--FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY 210 (1233)
T ss_pred HHhhhc--ccchhhHHHHHHHHHHHHHhhcc---cCcc--hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 221100 0223466677777766544 331 1111 12234444444455543 47778888887766553 233
Q ss_pred HHHHHhhh-hhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCC-CCcchhhhcHH
Q 004414 275 QALLCRVP-FLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPS-EDWEIADSTLQ 352 (755)
Q Consensus 275 ~~l~~~~~-~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~-~d~~v~~~~~~ 352 (755)
..++..++ ++.+ .......+-+...+.+++-.-=..+.+ +.-.++.++..++..-. .|++..+..++
T Consensus 211 ~~li~~Ll~~L~~--------~~q~~~~rt~Iq~l~~i~r~ag~r~~~---h~~~ivp~v~~y~~~~e~~dDELrE~~lQ 279 (1233)
T KOG1824|consen 211 VELIEHLLKGLSN--------RTQMSATRTYIQCLAAICRQAGHRFGS---HLDKIVPLVADYCNKIEEDDDELREYCLQ 279 (1233)
T ss_pred HHHHHHHHhccCC--------CCchHHHHHHHHHHHHHHHHhcchhhc---ccchhhHHHHHHhcccccCcHHHHHHHHH
Confidence 33333322 1111 122334444455555544332222222 23356666666662211 24567776666
Q ss_pred HHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCC
Q 004414 353 FWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDES 399 (755)
Q Consensus 353 FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~ 399 (755)
-...|..+- .....|+...+++.++.++.||+.
T Consensus 280 ale~fl~rc--------------p~ei~p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 280 ALESFLRRC--------------PKEILPHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred HHHHHHHhC--------------hhhhcccchHHHHHHHHHhccCCC
Confidence 555555431 123456677888999999999754
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.36 E-value=2.6 Score=47.92 Aligned_cols=424 Identities=17% Similarity=0.140 Sum_probs=216.6
Q ss_pred cCCChHHHHHHHHHHHHHhcC-hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 004414 18 HDTESCNRVAANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVA 96 (755)
Q Consensus 18 ~~~d~~~~~qA~~~L~~fq~s-~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~ 96 (755)
.++|...|+-+.=++..+... ++...++..-+..+-. +.++.+|-.|..+|-+- . +++....+-..+.+.
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~--~~n~~~~~lAL~~l~~i-~------~~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLN--SPNPYIRGLALRTLSNI-R------TPEMAEPLIPDVIKL 122 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHC--SSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhc--CCCHHHHHHHHhhhhhh-c------ccchhhHHHHHHHHH
Confidence 356888899999999988776 4435555555543321 24568888898888763 3 456666666666555
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHhcc-cCc-hHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHH
Q 004414 97 AKRFSSGPPQLLTQICLALSALILRAVE-HGK-PIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAH 174 (755)
Q Consensus 97 l~~~~~~~~~v~~kL~~~la~l~~~~~~-W~~-~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~ 174 (755)
+. ...+.||++-+.++..++...++ -+. +++.+...+... ++......+.++..+ ... +..
T Consensus 123 l~---~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i--~~~----------~~~ 185 (526)
T PF01602_consen 123 LS---DPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDK--DPSVVSAALSLLSEI--KCN----------DDS 185 (526)
T ss_dssp HH---SSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHS--SHHHHHHHHHHHHHH--HCT----------HHH
T ss_pred hc---CCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCC--cchhHHHHHHHHHHH--ccC----------cch
Confidence 54 35578999999999998877652 122 466666666442 333444555555555 110 000
Q ss_pred HHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcc--cchHHHHHhhcCC
Q 004414 175 RSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAA--HPLLNFVFNSLQV 252 (755)
Q Consensus 175 r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~--~~ll~~~~~~L~~ 252 (755)
.....+.++..+.+.+.. +++-.+..+++++..+.... .... ..+++.+...+.+
T Consensus 186 -------~~~~~~~~~~~L~~~l~~--------~~~~~q~~il~~l~~~~~~~--------~~~~~~~~~i~~l~~~l~s 242 (526)
T PF01602_consen 186 -------YKSLIPKLIRILCQLLSD--------PDPWLQIKILRLLRRYAPME--------PEDADKNRIIEPLLNLLQS 242 (526)
T ss_dssp -------HTTHHHHHHHHHHHHHTC--------CSHHHHHHHHHHHTTSTSSS--------HHHHHHHHHHHHHHHHHHH
T ss_pred -------hhhhHHHHHHHhhhcccc--------cchHHHHHHHHHHHhcccCC--------hhhhhHHHHHHHHHHHhhc
Confidence 001123334444443322 23446667777776544311 1111 3466666666552
Q ss_pred --CCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHH
Q 004414 253 --QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALA 330 (755)
Q Consensus 253 --~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll 330 (755)
+.+.-.|+.++..+-... ...+..++.+.. .+.+.|.+..--....+..++..+...+. -.
T Consensus 243 ~~~~V~~e~~~~i~~l~~~~-~~~~~~~~~L~~--------lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--------~~ 305 (526)
T PF01602_consen 243 SSPSVVYEAIRLIIKLSPSP-ELLQKAINPLIK--------LLSSSDPNVRYIALDSLSQLAQSNPPAVF--------NQ 305 (526)
T ss_dssp HHHHHHHHHHHHHHHHSSSH-HHHHHHHHHHHH--------HHTSSSHHHHHHHHHHHHHHCCHCHHHHG--------TH
T ss_pred cccHHHHHHHHHHHHhhcch-HHHHhhHHHHHH--------HhhcccchhehhHHHHHHHhhcccchhhh--------hh
Confidence 222333333333222211 112222222221 22344554433344445555555433332 11
Q ss_pred HHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 004414 331 DALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLP 410 (755)
Q Consensus 331 ~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~ 410 (755)
...+.+..+. .|..+...+++-.+.+.+.- . +..+++.+...++ +.+
T Consensus 306 ~~~~~~l~~~-~d~~Ir~~~l~lL~~l~~~~----------------n----~~~Il~eL~~~l~-~~~----------- 352 (526)
T PF01602_consen 306 SLILFFLLYD-DDPSIRKKALDLLYKLANES----------------N----VKEILDELLKYLS-ELS----------- 352 (526)
T ss_dssp HHHHHHHHCS-SSHHHHHHHHHHHHHH--HH----------------H----HHHHHHHHHHHHH-HC------------
T ss_pred hhhhheecCC-CChhHHHHHHHHHhhccccc----------------c----hhhHHHHHHHHHH-hcc-----------
Confidence 1222233321 14567777777665555421 1 1123333333331 000
Q ss_pred chHHHHHHHHhHHHHHHHHhcCc--HHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHH
Q 004414 411 DGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA 488 (755)
Q Consensus 411 d~f~~~R~~~~d~l~~~~~~l~~--~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~ 488 (755)
..+||..+...+..++....+ +.++..++.-+.. ......+.++..+..+....+... -..+..++.
T Consensus 353 --d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~-----~~~~~~~~~~~~i~~ll~~~~~~~----~~~l~~L~~ 421 (526)
T PF01602_consen 353 --DPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI-----SGDYVSNEIINVIRDLLSNNPELR----EKILKKLIE 421 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC-----TGGGCHCHHHHHHHHHHHHSTTTH----HHHHHHHHH
T ss_pred --chhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh-----ccccccchHHHHHHHHhhcChhhh----HHHHHHHHH
Confidence 022677777777777655432 3466666664442 112334555666666654432211 123344444
Q ss_pred HhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhh
Q 004414 489 VLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDAS 559 (755)
Q Consensus 489 ~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~ 559 (755)
.+.+...+. ++..+ +|++|.|++.+.. .+..+.++..+...+.. +.++...-.++.++.....
T Consensus 422 ~l~~~~~~~------~~~~~-~wilGEy~~~~~~-~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 422 LLEDISSPE------ALAAA-IWILGEYGELIEN-TESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp HHTSSSSHH------HHHHH-HHHHHHHCHHHTT-TTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhhHHH------HHHHH-HhhhcccCCcccc-cccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC
Confidence 455433332 44554 6999999998865 12455566666665543 4588888888888886654
No 27
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=2.6 Score=47.74 Aligned_cols=454 Identities=13% Similarity=0.109 Sum_probs=217.4
Q ss_pred hHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCCCc--HHHHHHHHHHHhhcCCC-----hhHHHHHhhhhh
Q 004414 212 RNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSS--FDVAIEVLVELVGRHEG-----LPQALLCRVPFL 284 (755)
Q Consensus 212 l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~~--~~~a~~~l~eii~~~~~-----~~~~l~~~~~~l 284 (755)
...++=-|+.-..+.. .+.+. ++.++.+-+.+.+|+- +++|+-.+-.++..... +....++.+..+
T Consensus 342 p~kAAg~CL~l~A~~~------~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~l 414 (859)
T KOG1241|consen 342 PAKAAGVCLMLFAQCV------GDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINL 414 (859)
T ss_pred HHHHHHHHHHHHHHHh------cccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHH
Confidence 4455555666555522 12222 3667777778888864 67787777777765431 122222222221
Q ss_pred HHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhc
Q 004414 285 KELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGL 364 (755)
Q Consensus 285 ~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~ 364 (755)
- ..+++...| ...-.+.+++-.+ +..+.+ .......+..++.-... +-.|+.-++--...|.+..++.
T Consensus 415 m---~D~sl~Vkd-TaAwtlgrI~d~l----~e~~~n-~~~l~~~l~~l~~gL~D---ePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 415 M---SDPSLWVKD-TAAWTLGRIADFL----PEAIIN-QELLQSKLSALLEGLND---EPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred h---cCchhhhcc-hHHHHHHHHHhhc----hhhccc-HhhhhHHHHHHHHHhhh---CchHHHHHHHHHHHHHHHHHHh
Confidence 0 001111111 1112233333222 221111 11223444444443222 1246665554445677776543
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHH--------HHhcCc-HH
Q 004414 365 DASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDI--------CQLLRS-AT 435 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~--------~~~l~~-~~ 435 (755)
..+ . .......|+|..++..+++-...++.. -...|...-+.|.++ |.++-. ..
T Consensus 483 ~~s----~-~qt~~~t~~y~~ii~~Ll~~tdr~dgn------------qsNLR~AAYeALmElIk~st~~vy~~v~~~~l 545 (859)
T KOG1241|consen 483 AVS----N-GQTDPATPFYEAIIGSLLKVTDRADGN------------QSNLRSAAYEALMELIKNSTDDVYPMVQKLTL 545 (859)
T ss_pred ccC----C-CCCCccchhHHHHHHHHHhhccccccc------------hhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 221 0 011233478888888887643221110 022354333333333 222111 00
Q ss_pred -HHHHHHHHhhcCCC---CCCChhhhHHHHH-HHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHH
Q 004414 436 -FIQKVFFGSWGSAN---VPIPWKEVETKLF-ALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA 510 (755)
Q Consensus 436 -~l~~~~~~~~~~~~---~~~~W~~~EA~L~-~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~ 510 (755)
.+..+-+.+.+... ...+..++++-|- .|++|-..+.++-.+. .+.+|.++..+.+.+... +....++
T Consensus 546 ~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~-~d~iM~lflri~~s~~s~------~v~e~a~ 618 (859)
T KOG1241|consen 546 VILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREV-SDQIMGLFLRIFESKRSA------VVHEEAF 618 (859)
T ss_pred HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhH-HHHHHHHHHHHHcCCccc------cchHHHH
Confidence 01111111110000 1123556666553 3444444333322111 367888777766553321 1222334
Q ss_pred HHHHhhHHHHHhC-ccchHHHHHHHHHhcccCc---hHHHHHHHHHHHHHHhhcccCCCchHHH-HHHHHHHHHhcCCCh
Q 004414 511 DVIGSYSKWISAF-QTNARPLLLFLAAGISEAV---SSNACASALRKICEDASALIDEPSNLEI-LMWIGEALEKRHLPL 585 (755)
Q Consensus 511 ~~ig~y~~~~~~~-p~~l~~~l~~l~~~l~~p~---v~~~Aa~al~~l~~~c~~~l~~~~~~~~-l~~~~~~l~~~~l~~ 585 (755)
..||...+-+..+ -.|.+...+|+..+|.+-. |-..|--..-.+|......+. | |-+. ...+.+.+.+..+..
T Consensus 619 laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~-p-y~d~~mt~Lvq~Lss~~~hR 696 (859)
T KOG1241|consen 619 LAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL-P-YCDELMTVLVQCLSSPNLHR 696 (859)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHccCccccc
Confidence 5666666555432 4578889999999997633 444555555667766666664 4 5554 445666776666666
Q ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccc
Q 004414 586 EDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPV 665 (755)
Q Consensus 586 ~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~ 665 (755)
+.+-.++...|-|.-++..+ ++..++-++.-+++.-+...+. .-.+-..|...|...+ ++.-..++..++.
T Consensus 697 ~vKP~IlS~FgDIAlaIg~~------F~~Yl~~vm~llq~as~~~~d~-~~~~~~dYvd~LRe~~--leay~gi~qglk~ 767 (859)
T KOG1241|consen 697 NVKPAILSVFGDIALAIGAD------FEPYLEMVMPLLQQASSVQTDP-ADDSMVDYVDELREGI--LEAYTGIIQGLKT 767 (859)
T ss_pred cccchHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHhccCCC-CcccHHHHHHHHHHHH--HHHHHHHHHHhhc
Confidence 66667777777777664333 3344444444455543222111 0012223433222211 2222334444442
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhH
Q 004414 666 PLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLL 725 (755)
Q Consensus 666 ~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l 725 (755)
. ....-+.+++..+.+++..|-.. =..++.++..+..+++-....+|++..+++
T Consensus 768 ~-----~~~~~~~p~v~~I~sfi~~I~~e-~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~ 821 (859)
T KOG1241|consen 768 H-----ADVMLVQPYVPHIISFIDRIAAE-PDVSEALHAAALGLIGDLATMFGKGVIKLF 821 (859)
T ss_pred c-----cchhhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHHHHHHHcccchhhhh
Confidence 1 11122334556666777777652 223466777888999999999999888865
No 28
>PRK09687 putative lyase; Provisional
Probab=93.73 E-value=7.9 Score=39.84 Aligned_cols=208 Identities=15% Similarity=0.093 Sum_probs=114.9
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHH
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~ 88 (755)
+...+..|. ++|...|..|-..|.++. +++++..+..++.+.+ ..+|.+|+.+|.. +.. +......
T Consensus 25 ~~~L~~~L~-d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~d------~~vR~~A~~aLg~-lg~-----~~~~~~~ 90 (280)
T PRK09687 25 DDELFRLLD-DHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSKN------PIERDIGADILSQ-LGM-----AKRCQDN 90 (280)
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCCC------HHHHHHHHHHHHh-cCC-----CccchHH
Confidence 344445554 678889999999998776 7889999999887654 5999999999966 221 1110111
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhccc-CchHHHHHHHhhccc--------------CCCchhHHHHHHH
Q 004414 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEH-GKPIEKLFYSLQNLQ--------------SQDNGNMAVLEML 153 (755)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~W-~~~i~~li~~~~~~~--------------~~~~~~~~lL~iL 153 (755)
.-..|...+. ......||...+.+|+.+......| +..+..+...+.... +++.....++..|
T Consensus 91 a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L 168 (280)
T PRK09687 91 VFNILNNLAL--EDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLL 168 (280)
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Confidence 1112221211 1234668888888887764333334 334444433332210 1122233333333
Q ss_pred hhhhhhcccccccccCCCHHHHHHHHHHHHh---chhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhcccc
Q 004414 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLS---HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (755)
Q Consensus 154 ~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~---~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~ 230 (755)
+. -...-|......|.. ..+.+...|.+.+.+ ++..++..+...+..+ +
T Consensus 169 ~d--------------~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D--------~~~~VR~~A~~aLg~~---~--- 220 (280)
T PRK09687 169 KD--------------PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD--------KNEEIRIEAIIGLALR---K--- 220 (280)
T ss_pred cC--------------CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC--------CChHHHHHHHHHHHcc---C---
Confidence 21 012344444444443 255666777766654 2345777776666542 1
Q ss_pred ccCcchhcccchHHHHHhhcCCCCcHHHHHHHHHHHhh
Q 004414 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVG 268 (755)
Q Consensus 231 ~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eii~ 268 (755)
...-++.+.+.|.++..+..|++++-++=.
T Consensus 221 --------~~~av~~Li~~L~~~~~~~~a~~ALg~ig~ 250 (280)
T PRK09687 221 --------DKRVLSVLIKELKKGTVGDLIIEAAGELGD 250 (280)
T ss_pred --------ChhHHHHHHHHHcCCchHHHHHHHHHhcCC
Confidence 124566777777777776666666655543
No 29
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.23 E-value=0.4 Score=40.36 Aligned_cols=89 Identities=13% Similarity=0.107 Sum_probs=59.5
Q ss_pred hHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhC-ccchHHHHHHHH
Q 004414 457 VETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNARPLLLFLA 535 (755)
Q Consensus 457 ~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~-p~~l~~~l~~l~ 535 (755)
+-++|.++.+++-++...-... ++.|+..+.....++.. .|||.+ |+.+...+...... -.++..++..+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~------rVRy~A-cEaL~ni~k~~~~~~l~~f~~IF~~L~ 74 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDS------RVRYYA-CEALYNISKVARGEILPYFNEIFDALC 74 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcH------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999998887542211 45555555455556554 389987 69999999876431 235678888889
Q ss_pred HhcccCc--hHHHHHHHHHHH
Q 004414 536 AGISEAV--SSNACASALRKI 554 (755)
Q Consensus 536 ~~l~~p~--v~~~Aa~al~~l 554 (755)
+.+.||+ |+.. |..+.++
T Consensus 75 kl~~D~d~~Vr~~-a~~Ld~l 94 (97)
T PF12755_consen 75 KLSADPDENVRSA-AELLDRL 94 (97)
T ss_pred HHHcCCchhHHHH-HHHHHHH
Confidence 9888876 5544 4545444
No 30
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=92.86 E-value=4.5 Score=42.49 Aligned_cols=169 Identities=8% Similarity=0.138 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhc------CCCCcHHH-HHHHHHHHhhcCC----ChhHHHHH
Q 004414 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSL------QVQSSFDV-AIEVLVELVGRHE----GLPQALLC 279 (755)
Q Consensus 211 ~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L------~~~~~~~~-a~~~l~eii~~~~----~~~~~l~~ 279 (755)
.++...|+-+..|++.. +-...+.+.+++.+++.. +.|+.++. ..+++..++.+.. +....++.
T Consensus 42 ~iKkeIL~Li~t~i~~~-----~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~ 116 (319)
T PF08767_consen 42 TIKKEILKLIETFISKA-----EDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE 116 (319)
T ss_dssp HHHHHHHHHHHHHHHT------S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 37788888888998843 211123334444444322 23566664 5567777766543 23333444
Q ss_pred hhhh-hHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcC-hhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHH
Q 004414 280 RVPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS-PEALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (755)
Q Consensus 280 ~~~~-l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~-~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l 357 (755)
.+.. ..+.+. ..-++-+|...++.+++..+.+.+...+..-| +.+..+++.+.....|+ +.+|++.++.....+
T Consensus 117 ~vf~~Tl~MI~--~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~--~~~I~~~~L~~l~~l 192 (319)
T PF08767_consen 117 AVFECTLPMIN--KDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT--NREISETGLNILLEL 192 (319)
T ss_dssp HHHHHHHHHHS--STSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHH
Confidence 3332 111111 11233478889999999999999988887755 46678999999999998 789999999998888
Q ss_pred HHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 004414 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRA 394 (755)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~ 394 (755)
.+.....+. +.....++.+|..++..++.-+
T Consensus 193 l~~~~~~~~------~~~~~F~~~y~~~il~~if~vl 223 (319)
T PF08767_consen 193 LNNVSKTNP------EFANQFYQQYYLDILQDIFSVL 223 (319)
T ss_dssp HHHHHH-SH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 887643111 2445567777777777776655
No 31
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.70 E-value=0.16 Score=32.52 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=23.9
Q ss_pred HHHHHHHhcccCc--hHHHHHHHHHHHHHHh
Q 004414 530 LLLFLAAGISEAV--SSNACASALRKICEDA 558 (755)
Q Consensus 530 ~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c 558 (755)
+++.+++.+.||. |+.+|+.+|..+++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4678889998865 9999999999999865
No 32
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=92.58 E-value=15 Score=40.87 Aligned_cols=232 Identities=13% Similarity=0.129 Sum_probs=122.4
Q ss_pred ChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh--CccchHHH
Q 004414 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQTNARPL 530 (755)
Q Consensus 453 ~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~--~p~~l~~~ 530 (755)
+-..+|++++++.+....+....++.-++.++.++..+.+... .||..+. ..+...-.-+.. -+.++++.
T Consensus 188 ~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~-------~Vr~Aa~-~a~kai~~~~~~~aVK~llpsl 259 (569)
T KOG1242|consen 188 SALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKIN-------KVREAAV-EAAKAIMRCLSAYAVKLLLPSL 259 (569)
T ss_pred hhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccch-------hhhHHHH-HHHHHHHHhcCcchhhHhhhhh
Confidence 3556789999998877766543332212223333333322111 1343332 333333222211 23455555
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHhhcccCCCchHHHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHH
Q 004414 531 LLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKN 609 (755)
Q Consensus 531 l~~l~~~l~~p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~ 609 (755)
+..+...-= +...++...+. ...+|++...+ ..++.+. .+.+.+ .....+.|..-++++-.+-+.+...+
T Consensus 260 l~~l~~~kW--rtK~aslellg-~m~~~ap~qLs-~~lp~iiP~lsevl--~DT~~evr~a~~~~l~~~~svidN~d--- 330 (569)
T KOG1242|consen 260 LGSLLEAKW--RTKMASLELLG-AMADCAPKQLS-LCLPDLIPVLSEVL--WDTKPEVRKAGIETLLKFGSVIDNPD--- 330 (569)
T ss_pred HHHHHHHhh--hhHHHHHHHHH-HHHHhchHHHH-HHHhHhhHHHHHHH--ccCCHHHHHHHHHHHHHHHHhhccHH---
Confidence 555443300 12333333344 44566654322 2333333 333333 33367778887877777766654443
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhh--hhcccccccCCCCCCCCchHHHHHHHHHHH
Q 004414 610 NLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMG--TVFSHLPVPLPTNPAGDDPIFALLRVFWPM 687 (755)
Q Consensus 610 ~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~--~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~ 687 (755)
+.+++..|-+++..+. .+ ...+++.|+ ++...+++ +-+.-+.|+
T Consensus 331 ------I~~~ip~Lld~l~dp~---------~~------~~e~~~~L~~ttFV~~V~~-------------psLalmvpi 376 (569)
T KOG1242|consen 331 ------IQKIIPTLLDALADPS---------CY------TPECLDSLGATTFVAEVDA-------------PSLALMVPI 376 (569)
T ss_pred ------HHHHHHHHHHHhcCcc---------cc------hHHHHHhhcceeeeeeecc-------------hhHHHHHHH
Confidence 3345555555555432 11 122344443 22222222 234566799
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHH--hhhhHhhHHHHHHHHHHHHhh
Q 004414 688 LEKLFRSEHMENGNLSTAACRALSLAIQSS--GQHFVTLLPQVLDCLSTNFVS 738 (755)
Q Consensus 688 l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l--~~~~~~~l~~~~~~l~~~f~~ 738 (755)
+.+-+.. .+.++...++..+..|..-. ...+.||+|.+++.+-..+..
T Consensus 377 L~R~l~e---Rst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d 426 (569)
T KOG1242|consen 377 LKRGLAE---RSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD 426 (569)
T ss_pred HHHHHhh---ccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC
Confidence 8888864 46777789999999999977 668999999999888776543
No 33
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.99 E-value=0.21 Score=37.04 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHh
Q 004414 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGS 515 (755)
Q Consensus 454 W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~ 515 (755)
|+.+++++++|+.+++......... ++.++..+..+.+++.+ .||..+ ++.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~------~VR~~A-~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDDDD------SVRAAA-AWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSH------HHHHHH-HHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCH------HHHHHH-HHHHhc
Confidence 8889999999999887665433222 45566655555566654 378777 599986
No 34
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.61 E-value=3.3 Score=41.20 Aligned_cols=139 Identities=16% Similarity=0.111 Sum_probs=80.5
Q ss_pred CCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHH----Hhcc-CchhhhhhHHHHHHhHHHHHHHhhHHHHHhCc
Q 004414 450 VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA----VLSA-SRSEELKGFMHIVYRSLADVIGSYSKWISAFQ 524 (755)
Q Consensus 450 ~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~----~l~~-~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p 524 (755)
.+.+|..+..+|--+..+..+-..... .+.++..+. .+.. ....+. .|..++ |.+++.++.-+..+=
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~---~~~~~~~l~~~~~~i~~~l~d~Rs----~v~~~A-~~~l~~l~~~l~~~~ 88 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDF---PPDFVECLRQLLDAIIKQLSDLRS----KVSKTA-CQLLSDLARQLGSHF 88 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B--------HHHHHHHH---HHHHH-S-HH-------HHHHH-HHHHHHHHHHHGGGG
T ss_pred CccCHHHHHHHHHHHHHHHHcCCcccc---HHHHHHHHHHhHHHHHHHHhhhHH----HHHHHH-HHHHHHHHHHHhHhH
Confidence 457899999999999988765521111 233333332 2221 111111 255555 699999998887653
Q ss_pred -cchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 004414 525 -TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (755)
Q Consensus 525 -~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (755)
.++..+++.|+..+.++. ++.+|..++..+++.|... +.. +....... ...-++..|....+.+..++..
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~---~~~~l~~~-~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKI---LLEILSQG-LKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH---HHHHHHHH-TT-S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHH---HHHHHHHH-HhCCCHHHHHHHHHHHHHHHHH
Confidence 356778888888888754 7889999999999887710 111 12222111 1222567799999999999998
Q ss_pred CC
Q 004414 602 VS 603 (755)
Q Consensus 602 ~p 603 (755)
.+
T Consensus 162 ~~ 163 (228)
T PF12348_consen 162 WG 163 (228)
T ss_dssp --
T ss_pred cc
Confidence 88
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.54 E-value=0.99 Score=38.00 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=33.9
Q ss_pred ccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhccc
Q 004414 524 QTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALI 562 (755)
Q Consensus 524 p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~~l 562 (755)
.++++.+++.++.++.|++ |+..||.|+.++++.++..+
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~ 62 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI 62 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999854 99999999999999998765
No 36
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=91.48 E-value=27 Score=38.95 Aligned_cols=303 Identities=11% Similarity=0.092 Sum_probs=153.5
Q ss_pred ccchHHHHHhhcCC--CCcHHHHHHHHHH---HhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHH
Q 004414 239 AHPLLNFVFNSLQV--QSSFDVAIEVLVE---LVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (755)
Q Consensus 239 ~~~ll~~~~~~L~~--~~~~~~a~~~l~e---ii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e 313 (755)
.++++..++..|++ |..+..|++.+.. ++..+.+.. .+.. +...+. +.+.++++|+...+.+.++++..
T Consensus 602 l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~--~l~k---lg~iLy-E~lge~ypEvLgsil~Ai~~I~s 675 (975)
T COG5181 602 LSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETK--ELAK---LGNILY-ENLGEDYPEVLGSILKAICSIYS 675 (975)
T ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHH--HHHH---HhHHHH-HhcCcccHHHHHHHHHHHHHHhh
Confidence 34566667777765 4567777665543 333333211 1111 111111 34556666654433333332211
Q ss_pred HhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 004414 314 AAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLR 393 (755)
Q Consensus 314 ~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k 393 (755)
.+ -+.+--+...+++..+.-+..+. +..|...|+.|...++..- + + + .....|.-+-..|++.+-
T Consensus 676 v~--~~~~mqpPi~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~~---p-e----y-i~~rEWMRIcfeLvd~Lk-- 740 (975)
T COG5181 676 VH--RFRSMQPPISGILPSLTPILRNK--HQKVVANTIALVGTICMNS---P-E----Y-IGVREWMRICFELVDSLK-- 740 (975)
T ss_pred hh--cccccCCchhhccccccHhhhhh--hHHHhhhHHHHHHHHHhcC---c-c----c-CCHHHHHHHHHHHHHHHH--
Confidence 11 01111112345555555555554 4678888888877666531 1 0 0 111122222233443321
Q ss_pred hccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccc
Q 004414 394 AQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQ 473 (755)
Q Consensus 394 ~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~ 473 (755)
.|. ++.|+..-++|-.+...+|+..+|..+++++.. ++=+.+=-.-.+++.+||.+..
T Consensus 741 ----------s~n-------KeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkv-----qeRq~RvctsvaI~iVae~cgp 798 (975)
T COG5181 741 ----------SWN-------KEIRRNATETFGCISRAIGPQDVLDILLNNLKV-----QERQQRVCTSVAISIVAEYCGP 798 (975)
T ss_pred ----------Hhh-------HHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchH-----HHHHhhhhhhhhhhhhHhhcCc
Confidence 121 345778888999999999999899988887653 2223333445677788887643
Q ss_pred cCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh-CccchHHHHHHHHHhccc--CchHHHHHHH
Q 004414 474 EGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLLLFLAAGISE--AVSSNACASA 550 (755)
Q Consensus 474 ~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~-~p~~l~~~l~~l~~~l~~--p~v~~~Aa~a 550 (755)
+..++.++.. ...|.. .|.. .++..+.-+.+++.. .-+|+-.+.+.+-.++.| |.-+..|+.-
T Consensus 799 ------fsVlP~lm~d---Y~TPe~----nVQn-GvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nv 864 (975)
T COG5181 799 ------FSVLPTLMSD---YETPEA----NVQN-GVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNV 864 (975)
T ss_pred ------hhhHHHHHhc---ccCchh----HHHH-hHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHH
Confidence 2333333332 112211 1222 112333323333332 235777888888888876 4467889999
Q ss_pred HHHHHHHhhcccCCCchHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHccC
Q 004414 551 LRKICEDASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSV 602 (755)
Q Consensus 551 l~~l~~~c~~~l~~~~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~vi~~~ 602 (755)
++++.-.|...- ..+....+..-+-- -.-++.....+-||+-.+...+
T Consensus 865 I~Hl~Lnc~gtg----~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~l 914 (975)
T COG5181 865 IRHLVLNCPGTG----DEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVL 914 (975)
T ss_pred HHHHhcCCCCcc----cHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHh
Confidence 999998888642 44443333322211 1123444555556655554443
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.39 E-value=12 Score=42.29 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=80.8
Q ss_pred ChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCcc----ch-
Q 004414 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT----NA- 527 (755)
Q Consensus 453 ~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~----~l- 527 (755)
+=..++.+..+|..+-+......- .+.+...+.....||++ .||.-+ ++.|+++.+ |++ .+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~------~Vr~l~-l~~l~~~~~----~~~~~~~~~~ 116 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSP------KVRRLA-LKQLGRIAR----HSEGAAQLLV 116 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCH------HHHHHH-HHHHHHHhc----CCHHHHHHhc
Confidence 445677888888877665543221 36677777776778876 366655 588888763 222 11
Q ss_pred -HHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhc--ccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccC
Q 004414 528 -RPLLLFLAAGISEAV--SSNACASALRKICEDASA--LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (755)
Q Consensus 528 -~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~--~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~ 602 (755)
..+++.++.++.+++ |+..|+.++.+++..-.. .+..+... ..+...+. .-+...|.++++.+..+.+..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~---~~L~~l~~--~~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLL---SKLKSLMS--QSSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchH---HHHHHHHh--ccCHHHHHHHHHHHHHHHhcC
Confidence 356777888888876 889999999999853111 11111111 22222211 114457999999999997664
Q ss_pred Cc
Q 004414 603 SN 604 (755)
Q Consensus 603 p~ 604 (755)
+.
T Consensus 192 ~~ 193 (503)
T PF10508_consen 192 PE 193 (503)
T ss_pred HH
Confidence 43
No 38
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=90.06 E-value=11 Score=40.61 Aligned_cols=174 Identities=18% Similarity=0.175 Sum_probs=100.4
Q ss_pred HHHHhhHHHHHhCccchHHHHHHHHHhcccC---chHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhh
Q 004414 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEA---VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLED 587 (755)
Q Consensus 511 ~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p---~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~ 587 (755)
.+-|.++-|- ++...+|..++.-+.+. ..+.-|-+.++..|+.-+..+.. +..-.+.++.+.- .....+.
T Consensus 315 ~~e~sfsvWe----q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D-stE~ai~K~Leaa--~ds~~~v 387 (516)
T KOG2956|consen 315 LCEGSFSVWE----QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD-STEIAICKVLEAA--KDSQDEV 387 (516)
T ss_pred HHccchhHHH----HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc-hHHHHHHHHHHHH--hCCchhH
Confidence 4566777774 34445555555555652 25666666777777666655543 2233455555432 1112233
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccC
Q 004414 588 EEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPL 667 (755)
Q Consensus 588 ~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~ 667 (755)
-...-|....+++...+..+. . .+.|++.. + ..| .....++++.++|..+...
T Consensus 388 ~~~Aeed~~~~las~~P~~~I-~----~i~~~Ilt-------~------D~~--------~~~~~iKm~Tkl~e~l~~E- 440 (516)
T KOG2956|consen 388 MRVAEEDCLTTLASHLPLQCI-V----NISPLILT-------A------DEP--------RAVAVIKMLTKLFERLSAE- 440 (516)
T ss_pred HHHHHHHHHHHHHhhCchhHH-H----HHhhHHhc-------C------cch--------HHHHHHHHHHHHHhhcCHH-
Confidence 334445555555543333221 1 22233322 1 112 1244678888999888752
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHh-hhhHhhHHHHH
Q 004414 668 PTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-QHFVTLLPQVL 729 (755)
Q Consensus 668 ~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~-~~~~~~l~~~~ 729 (755)
.+..++..+.|.+-+...+ .+..|...+..|+..++..+| +.+.|+|.++-
T Consensus 441 --------eL~~ll~diaP~~iqay~S---~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 441 --------ELLNLLPDIAPCVIQAYDS---TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLT 492 (516)
T ss_pred --------HHHHhhhhhhhHHHHHhcC---chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhcc
Confidence 2455667777777665543 356777788999999999999 89999998763
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.66 E-value=6.2 Score=43.47 Aligned_cols=141 Identities=21% Similarity=0.250 Sum_probs=88.0
Q ss_pred cCchHHHHHHHHHHHHHHhh---cccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 004414 540 EAVSSNACASALRKICEDAS---ALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLL 616 (755)
Q Consensus 540 ~p~v~~~Aa~al~~l~~~c~---~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~ 616 (755)
+|.++--||.|+.+++.... +.+......+.|..+... . +.+.++..+=|+|.++.-.|.-+. .-.--..+
T Consensus 123 ~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s---~--~~~v~eQavWALgNIagds~~~Rd-~vl~~g~l 196 (514)
T KOG0166|consen 123 NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS---P--SADVREQAVWALGNIAGDSPDCRD-YVLSCGAL 196 (514)
T ss_pred ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC---C--cHHHHHHHHHHHhccccCChHHHH-HHHhhcch
Confidence 37789999999999996543 233333456666665532 2 456789999999999988766542 11222344
Q ss_pred HHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 004414 617 SSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEH 696 (755)
Q Consensus 617 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~ 696 (755)
.|++..+.. . .+. ..+..+... |+.++++-+ ++|....++.+.|++..++.+
T Consensus 197 ~pLl~~l~~----~-------~~~---~~lRn~tW~---LsNlcrgk~---------P~P~~~~v~~iLp~L~~ll~~-- 248 (514)
T KOG0166|consen 197 DPLLRLLNK----S-------DKL---SMLRNATWT---LSNLCRGKN---------PSPPFDVVAPILPALLRLLHS-- 248 (514)
T ss_pred HHHHHHhcc----c-------cch---HHHHHHHHH---HHHHHcCCC---------CCCcHHHHHHHHHHHHHHHhc--
Confidence 455544332 1 110 012222333 334444432 566788889999999988863
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 004414 697 MENGNLSTAACRALSLAIQ 715 (755)
Q Consensus 697 ~~~~~v~e~~~~~~~~~~~ 715 (755)
.|.+|...+|-+++....
T Consensus 249 -~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 249 -TDEEVLTDACWALSYLTD 266 (514)
T ss_pred -CCHHHHHHHHHHHHHHhc
Confidence 689999989988887664
No 40
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=89.48 E-value=0.38 Score=35.55 Aligned_cols=50 Identities=20% Similarity=0.130 Sum_probs=35.3
Q ss_pred HHHhHHHHHHHhhHHHHHh-CccchHHHHHHHHHhcccCc--hHHHHHHHHHHH
Q 004414 504 IVYRSLADVIGSYSKWISA-FQTNARPLLLFLAAGISEAV--SSNACASALRKI 554 (755)
Q Consensus 504 v~~~t~~~~ig~y~~~~~~-~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l 554 (755)
+|..+ ++.||+.+.-... -..+++.+++.|+..+.|++ |+..|+.|+.+|
T Consensus 3 vR~~A-~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAA-AWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHH-HHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHH-HHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 67777 5999975521111 12377889999999998754 999999998754
No 41
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.47 E-value=0.48 Score=41.31 Aligned_cols=97 Identities=12% Similarity=-0.039 Sum_probs=55.9
Q ss_pred CChhhhHHHHHHHHhhhhhccccCCccchH-HHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccc-h-H
Q 004414 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFS-VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTN-A-R 528 (755)
Q Consensus 452 ~~W~~~EA~L~~l~~iae~~~~~~~~~~l~-~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~-l-~ 528 (755)
.+|..++.++++++.++...+...... +. .++..+..+.+++.+ .++..+ +++++.++......++. . .
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~i~~l~~~l~~~~~------~v~~~a-~~~L~~l~~~~~~~~~~~~~~ 90 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAV-VEAGGLPALVQLLKSEDE------EVVKAA-LWALRNLAAGPEDNKLIVLEA 90 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHH-HHCCChHHHHHHHhCCCH------HHHHHH-HHHHHHHccCcHHHHHHHHHC
Confidence 459999999999999987633211100 01 122222222233332 256665 48999887543222221 1 1
Q ss_pred HHHHHHHHhccc--CchHHHHHHHHHHHHH
Q 004414 529 PLLLFLAAGISE--AVSSNACASALRKICE 556 (755)
Q Consensus 529 ~~l~~l~~~l~~--p~v~~~Aa~al~~l~~ 556 (755)
.+++.+.+.+.+ .+++..|+.+|.++|+
T Consensus 91 g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 91 GGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 356666666665 4588999999999874
No 42
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=89.08 E-value=48 Score=38.02 Aligned_cols=225 Identities=9% Similarity=0.053 Sum_probs=121.3
Q ss_pred HHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 004414 327 LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGM 406 (755)
Q Consensus 327 ~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~ 406 (755)
..++.-+.-+..+. ++.|.+.++.+-..+++.- .+ + .....|.-+-..|++.+-. |
T Consensus 882 ~dllPrltPILknr--heKVqen~IdLvg~Iadrg----pE----~-v~aREWMRIcfeLlelLka------------h- 937 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNR--HEKVQENCIDLVGTIADRG----PE----Y-VSAREWMRICFELLELLKA------------H- 937 (1172)
T ss_pred hhhcccchHhhhhh--HHHHHHHHHHHHHHHHhcC----cc----c-CCHHHHHHHHHHHHHHHHH------------H-
Confidence 44555555555553 4677788888877766531 10 0 1111222222234333211 1
Q ss_pred CCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHH
Q 004414 407 VDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQL 486 (755)
Q Consensus 407 ~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~l 486 (755)
-++.|+..-.+|-++...+|+..+|..+++++.. ++=|.+=-.-.++..+||.+.. +..++.+
T Consensus 938 ------kK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkv-----qeRq~RvcTtvaIaIVaE~c~p------FtVLPal 1000 (1172)
T KOG0213|consen 938 ------KKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKV-----QERQNRVCTTVAIAIVAETCGP------FTVLPAL 1000 (1172)
T ss_pred ------HHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchH-----HHHHhchhhhhhhhhhhhhcCc------hhhhHHH
Confidence 1344777778999999999999899988887653 1222233334567778887743 2334444
Q ss_pred HHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh-CccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccC
Q 004414 487 VAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALID 563 (755)
Q Consensus 487 l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~-~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~~l~ 563 (755)
+.-. ..|... |.. .++..++-+.+++.. ..+|+-.+++.|-.+|.|-+ -+..|+.++++++-.|...-
T Consensus 1001 mneY-rtPe~n------VQn-GVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g- 1071 (1172)
T KOG0213|consen 1001 MNEY-RTPEAN------VQN-GVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTG- 1071 (1172)
T ss_pred Hhhc-cCchhH------HHH-hHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcC-
Confidence 4321 112111 222 122333333333332 34688889999999998754 57889999999987776432
Q ss_pred CCchHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHHHccCCc
Q 004414 564 EPSNLEILMWIGEALE--KRHLPLEDEEEVVGAISLILGSVSN 604 (755)
Q Consensus 564 ~~~~~~~l~~~~~~l~--~~~l~~~~~~~l~eai~~vi~~~p~ 604 (755)
..+.+..+..-+- ....++-....+.||+-.+-.++.+
T Consensus 1072 ---~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1072 ---CEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred ---cHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhch
Confidence 4454444433221 1122344455555555554444333
No 43
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.55 E-value=51 Score=37.69 Aligned_cols=217 Identities=15% Similarity=0.138 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhccc
Q 004414 84 AAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (755)
Q Consensus 84 ~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~ 162 (755)
+-..-|-+.++..+.+ .-+++|.|-...+-.++++++ .-...++-+.+.+... ++....+. ..+|+|=..
T Consensus 140 dLARDLa~Dv~tLL~s---skpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDp--Dp~V~SAA---V~VICELAr- 210 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNS---SKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDP--DPSVVSAA---VSVICELAR- 210 (877)
T ss_pred hhhHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCC--CchHHHHH---HHHHHHHHh-
Confidence 3344455555555432 346789888888888888876 3445566667766542 33222222 233343321
Q ss_pred ccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccch
Q 004414 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (755)
Q Consensus 163 ~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~l 242 (755)
+ .+ +....-+|..+.++.+ .. +.=+....++-|++-..+.+. . --.+
T Consensus 211 --K-----nP-------knyL~LAP~ffklltt----Ss-------NNWmLIKiiKLF~aLtplEPR------L--gKKL 257 (877)
T KOG1059|consen 211 --K-----NP-------QNYLQLAPLFYKLLVT----SS-------NNWVLIKLLKLFAALTPLEPR------L--GKKL 257 (877)
T ss_pred --h-----CC-------cccccccHHHHHHHhc----cC-------CCeehHHHHHHHhhccccCch------h--hhhh
Confidence 1 00 1112235555665543 21 112566777777766654321 1 1234
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHhhcCC-----C---hhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHH
Q 004414 243 LNFVFNSLQVQSSFDVAIEVLVELVGRHE-----G---LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (755)
Q Consensus 243 l~~~~~~L~~~~~~~~a~~~l~eii~~~~-----~---~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~ 314 (755)
++.+.+.+.+-..-....+|+..++...+ + .++.-+.++ +. .+.+.|. ..+.++.+..
T Consensus 258 ieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKL---r~-----fiedsDq-NLKYlgLlam----- 323 (877)
T KOG1059|consen 258 IEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKL---RI-----FIEDSDQ-NLKYLGLLAM----- 323 (877)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHH---hh-----hhhcCCc-cHHHHHHHHH-----
Confidence 44444444433322233456655555421 1 112222222 11 1122222 2233332211
Q ss_pred hhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHH
Q 004414 315 APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (755)
Q Consensus 315 ~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~ 359 (755)
.+++..||..+++--+++++|++.. |..|...+++..+.+..
T Consensus 324 -~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 324 -SKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVS 365 (877)
T ss_pred -HHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhh
Confidence 1222334444556778999999885 67888888888776654
No 44
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.93 E-value=59 Score=37.68 Aligned_cols=27 Identities=26% Similarity=0.472 Sum_probs=20.9
Q ss_pred HHHHhcccCCCCCcchhhhcHHHHHHHHH
Q 004414 331 DALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (755)
Q Consensus 331 ~~ll~~~~~p~~d~~v~~~~~~FW~~l~~ 359 (755)
..+++|..+| |..+...|+|--+.+..
T Consensus 353 ~tIleCL~Dp--D~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 353 STILECLKDP--DVSIKRRALELSYALVN 379 (866)
T ss_pred HHHHHHhcCC--cHHHHHHHHHHHHHHhc
Confidence 4678899998 66788888888776655
No 45
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=86.98 E-value=1.2e+02 Score=40.11 Aligned_cols=229 Identities=18% Similarity=0.121 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhccC-CChHHHHHHHHHHHHHhcChHHHH-----------HHHHhhcCCCCCCCcchhHHHHHHHHHHHH
Q 004414 6 QIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWE-----------IATSILTSDRQSFLTDFEVEFFAAQILKRK 73 (755)
Q Consensus 6 ~~~v~~av~~ly~~-~d~~~~~qA~~~L~~fq~s~~aw~-----------~~~~LL~~~~~~~~~~~~v~ffaa~tL~~k 73 (755)
...|...|+.|-+. ++++.|++|-..|..|-++.+.-. ....+|.+. +..+|--|+.+|.+-
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg------~~~vk~nAaaaL~nL 85 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG------TLGAKVNAAAVLGVL 85 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC------CHHHHHHHHHHHHHH
Confidence 66788888888643 367889999999999988764432 234455433 357888888777664
Q ss_pred HhcccCCCChHHHHHH-HH----HHHHHHHHhcCCChHHHHHHHHHHHHHHHHh--c-cc------CchHHHHHHHhhcc
Q 004414 74 IQNEGYYLQSAAKDAL-LN----ALLVAAKRFSSGPPQLLTQICLALSALILRA--V-EH------GKPIEKLFYSLQNL 139 (755)
Q Consensus 74 i~~~~~~l~~~~~~~L-r~----~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~--~-~W------~~~i~~li~~~~~~ 139 (755)
-.+ ++.+..+ +. -|++.|. .|+...+..-+.+|-.+.... . .| +..++.++..+++.
T Consensus 86 S~~------e~nk~~Iv~~GaIppLV~LL~---sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g 156 (2102)
T PLN03200 86 CKE------EDLRVKVLLGGCIPPLLSLLK---SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156 (2102)
T ss_pred hcC------HHHHHHHHHcCChHHHHHHHH---CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC
Confidence 221 1222111 11 2333333 354444444444555555432 1 12 45678888887753
Q ss_pred cCCCch-hHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHH
Q 004414 140 QSQDNG-NMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILR 218 (755)
Q Consensus 140 ~~~~~~-~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~ 218 (755)
...... .......|..|.-.- +.....+.+ ....+.++.++ .+. ++..+..+..
T Consensus 157 sk~d~~L~~~Av~AL~nLs~~~-----------en~~~~IIe--aGaVp~LV~LL----sS~--------d~~lQ~eAa~ 211 (2102)
T PLN03200 157 NKQDKVVEGLLTGALRNLCGST-----------DGFWSATLE--AGGVDILVKLL----SSG--------NSDAQANAAS 211 (2102)
T ss_pred chhhHHHHHHHHHHHHHHhcCc-----------cchHHHHHH--cCCHHHHHHHH----cCC--------CHHHHHHHHH
Confidence 211110 111122332222211 111111111 01344444444 331 2455666655
Q ss_pred HHHHHHHhccccccCcchhcccchHHHHHhhcCC---CCcHHHHHHHHHHHhhcCCChhHHH
Q 004414 219 CLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQAL 277 (755)
Q Consensus 219 c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~---~~~~~~a~~~l~eii~~~~~~~~~l 277 (755)
++..-.... .-+...+.....++.+.+.|.+ +.+++.|+.++..+.+...+..+.+
T Consensus 212 aLa~Lass~---ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~I 270 (2102)
T PLN03200 212 LLARLMMAF---ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAI 270 (2102)
T ss_pred HHHHHHcCC---hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 554333211 1123345567788999999964 3568999999999988665444433
No 46
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.94 E-value=83 Score=37.41 Aligned_cols=385 Identities=14% Similarity=0.083 Sum_probs=190.6
Q ss_pred hHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCCCc--HHHHHHHHHHHhhcCC-----------ChhHHHH
Q 004414 212 RNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSS--FDVAIEVLVELVGRHE-----------GLPQALL 278 (755)
Q Consensus 212 l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~~--~~~a~~~l~eii~~~~-----------~~~~~l~ 278 (755)
+|.+.-.|+..-+.. +.|. ....+++.+-..|++++. .-.+.-|+-++.+.|+ ..++.++
T Consensus 105 iRvql~~~l~~Ii~~----D~p~---~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~f 177 (1010)
T KOG1991|consen 105 IRVQLTACLNTIIKA----DYPE---QWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELF 177 (1010)
T ss_pred HHHHHHHHHHHHHhc----CCcc---cchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 455555566666652 3442 246688888888888764 4467888888888653 1345667
Q ss_pred HhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchh-----------
Q 004414 279 CRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIA----------- 347 (755)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~----------- 347 (755)
|.++++...+.. .-..+..+..+-++++|-++..--.+.-...++.+..-+++.+.+.+-|+.. ++.
T Consensus 178 P~il~~~~~ll~-~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~-E~l~~d~e~R~~~~ 255 (1010)
T KOG1991|consen 178 PDILQIFNGLLS-QESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPV-EVLSLDPEDRSSWP 255 (1010)
T ss_pred HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCCh-hcccCChhhccccc
Confidence 777665443321 1111223566778888877766544444444556677788888888887631 111
Q ss_pred -----hhcHHHHHHHHHHhhhcchhhhhhhhhhhhh-hHHHHHHHHHHHHHHhc-cCCCCCCCCCCCCCCchHHHHHHHH
Q 004414 348 -----DSTLQFWSTLASYILGLDASIAKNKKHVEDM-FFSVFSALLDALLLRAQ-VDESSFNDDGMVDLPDGLVQFRMNL 420 (755)
Q Consensus 348 -----~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~Ll~~l~~k~~-~p~~~~~~~~~~d~~d~f~~~R~~~ 420 (755)
.=++.+.+.+.+...+..... ++.+.-... .+.++..++++.++.+. |... .|-.+. -. ..+
T Consensus 256 wwK~KKWa~~~L~Rlf~Ryg~~~~~~-~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~----~yls~r---vl---~~~ 324 (1010)
T KOG1991|consen 256 WWKCKKWALHILNRLFERYGSPSLVV-PEYKEFAQMFLKNFAQGILEVFLKILEQWRQQ----LYLSDR---VL---YYL 324 (1010)
T ss_pred chhhHHHHHHHHHHHHHHhCCccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCHH---HH---HHH
Confidence 123333344444332111000 001111111 23334555566655543 2221 122110 00 112
Q ss_pred hHHHHH------HHHhcCcHH--HH-HHHHHHhhcCCCCCCChh-------------------hhHHHHHHHHhhhhhcc
Q 004414 421 VELLVD------ICQLLRSAT--FI-QKVFFGSWGSANVPIPWK-------------------EVETKLFALNVVSEVVL 472 (755)
Q Consensus 421 ~d~l~~------~~~~l~~~~--~l-~~~~~~~~~~~~~~~~W~-------------------~~EA~L~~l~~iae~~~ 472 (755)
.+.+.. .+..++|.. ++ ..+|..+.-+.....-|+ -.=|++.++..++.-=.
T Consensus 325 l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ 404 (1010)
T KOG1991|consen 325 LNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRG 404 (1010)
T ss_pred HHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcc
Confidence 222222 233444431 11 112221110000001122 12355666554433211
Q ss_pred ccCCccchHHHHHHHHHhc----cCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccc---hH-HHHHHHHHhcccCc--
Q 004414 473 QEGQAFDFSVIMQLVAVLS----ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTN---AR-PLLLFLAAGISEAV-- 542 (755)
Q Consensus 473 ~~~~~~~l~~i~~ll~~l~----~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~---l~-~~l~~l~~~l~~p~-- 542 (755)
+ + . ++.+++.+..+. ..+.+..+- .-...+ ++++|+.++.+.+...+ ++ -+++.++..+..|-
T Consensus 405 k--e-~-l~k~l~F~~~Il~~~~~~~~~~~~~--rqkdGA-L~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~ 477 (1010)
T KOG1991|consen 405 K--E-T-LPKILSFIVDILTRYKEASPPNKNP--RQKDGA-LRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGY 477 (1010)
T ss_pred h--h-h-hhhHHHHHHHHHHhhcccCCCccCh--hhhhhH-HHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhH
Confidence 1 1 1 566666544432 121111100 124555 69999999988764321 21 23445556666665
Q ss_pred hHHHHHHHHHHHHH-HhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 004414 543 SSNACASALRKICE-DASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYE 621 (755)
Q Consensus 543 v~~~Aa~al~~l~~-~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~ 621 (755)
++++||.-+..+|+ +-+..- . ...++...+.++.+ .-....+....-|+-..++..+.. .+++...+.|+++
T Consensus 478 Lrarac~vl~~~~~~df~d~~-~--l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~---~e~~~~hvp~~mq 550 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKDPN-N--LSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQA---DEKVSAHVPPIMQ 550 (1010)
T ss_pred HHHHHHHHHHHHHhccCCChH-H--HHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhh---hhhHhhhhhHHHH
Confidence 79999999999994 333221 0 23344444444432 112234666777888888775543 3557788888888
Q ss_pred HHHhhhccC
Q 004414 622 AIGKLIDGD 630 (755)
Q Consensus 622 ~l~~~~~~~ 630 (755)
.|-.+++..
T Consensus 551 ~lL~L~ne~ 559 (1010)
T KOG1991|consen 551 ELLKLSNEV 559 (1010)
T ss_pred HHHHHHHhc
Confidence 888776643
No 47
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.34 E-value=70 Score=36.63 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=36.9
Q ss_pred HHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcc
Q 004414 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASAL 561 (755)
Q Consensus 504 v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~~ 561 (755)
+|..++ .+ ...-|-+-|+.|.++++-|...|.||+ |+++|..-+..++...++.
T Consensus 160 vRKkAI-l~---lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 160 VRKKAI-LL---LYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred HHHHHH-HH---HHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 566544 22 333345679999999999999999876 7766666666665555544
No 48
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.87 E-value=12 Score=41.25 Aligned_cols=258 Identities=13% Similarity=0.126 Sum_probs=130.7
Q ss_pred HHHHHhHHHHHHHHhcCcHH--HH----HHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCc-cchHHHHHHHH
Q 004414 416 FRMNLVELLVDICQLLRSAT--FI----QKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQA-FDFSVIMQLVA 488 (755)
Q Consensus 416 ~R~~~~d~l~~~~~~l~~~~--~l----~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~-~~l~~i~~ll~ 488 (755)
.|...+..+.+++...-... ++ ..+|..+.. +++-.-.|=+.++|+.|+...+.-.+. .+...+..++.
T Consensus 126 lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~----s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~ 201 (514)
T KOG0166|consen 126 LQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS----SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLR 201 (514)
T ss_pred HHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc----CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHH
Confidence 36777888887765211100 11 123333432 334445799999999987533221110 00012333444
Q ss_pred HhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCc--cchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhcccCC
Q 004414 489 VLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ--TNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDE 564 (755)
Q Consensus 489 ~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p--~~l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~l~~ 564 (755)
.+....... .+| .. .|+++.+|+--.-.| +.+.++|+.|...+++ ++|..-||.|+..+.+.-...+..
T Consensus 202 ~l~~~~~~~-----~lR-n~-tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~ 274 (514)
T KOG0166|consen 202 LLNKSDKLS-----MLR-NA-TWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQM 274 (514)
T ss_pred HhccccchH-----HHH-HH-HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 433222211 233 33 599999986322223 3578899999998885 558899999999998654332210
Q ss_pred CchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHH
Q 004414 565 PSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQ 644 (755)
Q Consensus 565 ~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~ 644 (755)
--.....-.+...+... +...+.-.+.++|.|+..... +. ... +-.+.+.-|..++........+
T Consensus 275 vi~~gvv~~LV~lL~~~--~~~v~~PaLRaiGNIvtG~d~-QT-q~v---i~~~~L~~l~~ll~~s~~~~ik-------- 339 (514)
T KOG0166|consen 275 VIDAGVVPRLVDLLGHS--SPKVVTPALRAIGNIVTGSDE-QT-QVV---INSGALPVLSNLLSSSPKESIK-------- 339 (514)
T ss_pred HHHccchHHHHHHHcCC--CcccccHHHhhccceeeccHH-HH-HHH---HhcChHHHHHHHhccCcchhHH--------
Confidence 00011122233333222 334567788999997765322 21 121 2234555666666643221110
Q ss_pred HHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHH-HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 004414 645 ILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALL-RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSS 717 (755)
Q Consensus 645 ~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~-~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l 717 (755)
+-++..+..++.. .+.-+-.++ ..++|.+..+++. ++..+..+++-++..+...-
T Consensus 340 --kEAcW~iSNItAG-------------~~~qiqaVida~l~p~Li~~l~~---~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 340 --KEACWTISNITAG-------------NQEQIQAVIDANLIPVLINLLQT---AEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred --HHHHHHHHHhhcC-------------CHHHHHHHHHcccHHHHHHHHhc---cchHHHHHHHHHHHhhcccC
Confidence 1133344333221 111122333 3577888877763 35667666676666655433
No 49
>PTZ00429 beta-adaptin; Provisional
Probab=83.55 E-value=1e+02 Score=36.47 Aligned_cols=127 Identities=12% Similarity=0.082 Sum_probs=75.9
Q ss_pred cCCChHHHHHHHHHHHHHhc-ChH-HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 004414 18 HDTESCNRVAANQWLVQFQQ-TDA-AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLV 95 (755)
Q Consensus 18 ~~~d~~~~~qA~~~L~~fq~-s~~-aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~ 95 (755)
.++|...|+-.--||..+-+ .|+ +-..+..+.+...+ .++.+|-.|..+|-. |+ .++..+.+-..+.+
T Consensus 78 ~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d---~Np~IRaLALRtLs~-Ir------~~~i~e~l~~~lkk 147 (746)
T PTZ00429 78 PSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTN---SSPVVRALAVRTMMC-IR------VSSVLEYTLEPLRR 147 (746)
T ss_pred CCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHc-CC------cHHHHHHHHHHHHH
Confidence 45688888889999988877 465 54455555554442 467888888888855 22 12222333333322
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhcc---cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhh
Q 004414 96 AAKRFSSGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE 159 (755)
Q Consensus 96 ~l~~~~~~~~~v~~kL~~~la~l~~~~~~---W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE 159 (755)
.+. ..++.||++-+.+++.++-..+. -..+++.+...+... ++..+...+..|..+.++
T Consensus 148 ~L~---D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 148 AVA---DPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDY 209 (746)
T ss_pred Hhc---CCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHh
Confidence 222 35688999999999988765442 224566666666542 344444555555555443
No 50
>PTZ00429 beta-adaptin; Provisional
Probab=83.14 E-value=99 Score=36.61 Aligned_cols=103 Identities=10% Similarity=-0.027 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchH--HHHHHHHHhccc--CchHHHHHHHHHHHHH
Q 004414 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR--PLLLFLAAGISE--AVSSNACASALRKICE 556 (755)
Q Consensus 481 ~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~--~~l~~l~~~l~~--p~v~~~Aa~al~~l~~ 556 (755)
+.+...+.....++++ -||.+++ .++.+.. ..+|+.++ ..++.+..-+.| |.|..+|..+|..+++
T Consensus 139 e~l~~~lkk~L~D~~p------YVRKtAa-lai~Kly---~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 139 EYTLEPLRRAVADPDP------YVRKTAA-MGLGKLF---HDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHHHHHHHHhcCCCH------HHHHHHH-HHHHHHH---hhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 3444445555566664 3788875 6777653 34666543 334455554554 6689999999999998
Q ss_pred HhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 004414 557 DASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISL 597 (755)
Q Consensus 557 ~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ 597 (755)
.++..+. ...+.+..++..+ ...+...|..+++.+..
T Consensus 209 ~~~~~l~--l~~~~~~~Ll~~L--~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 209 YGSEKIE--SSNEWVNRLVYHL--PECNEWGQLYILELLAA 245 (746)
T ss_pred hCchhhH--HHHHHHHHHHHHh--hcCChHHHHHHHHHHHh
Confidence 8765431 1233455555544 23467789999998855
No 51
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=82.56 E-value=25 Score=34.82 Aligned_cols=172 Identities=17% Similarity=0.099 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHHhcc-cCCCChHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHhcc-cCchHHHHHH--
Q 004414 60 FEVEFFAAQILKRKIQNE-GYYLQSAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE-HGKPIEKLFY-- 134 (755)
Q Consensus 60 ~~v~ffaa~tL~~ki~~~-~~~l~~~~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~-W~~~i~~li~-- 134 (755)
=+.|.=|.+.|+.-++.+ -....+.....+| .++..+.... .....|...-|.+++.++.+... ....++.++.
T Consensus 21 W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~-~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGNAPEDFPPDFVECLR-QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-B-----HHHHHHHH----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHH-HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 356666777777777765 1223444455566 2223333221 12245778888899999887763 3223333333
Q ss_pred --HhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhch---hHH-HHHHHHhhhcccCCCCCcc
Q 004414 135 --SLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHT---PMV-VEFLMQQSDKRFDGGVPVQ 208 (755)
Q Consensus 135 --~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~---~~v-~~~l~~~l~~~~~~~~~~~ 208 (755)
.+... ...........| ..+...+ +.+ ...+.....+ .
T Consensus 100 l~~~~~~--~~~i~~~a~~~L--------------------------~~i~~~~~~~~~~~~~~l~~~~~~--------K 143 (228)
T PF12348_consen 100 LKKLGDS--KKFIREAANNAL--------------------------DAIIESCSYSPKILLEILSQGLKS--------K 143 (228)
T ss_dssp HHGGG-----HHHHHHHHHHH--------------------------HHHHTTS-H--HHHHHHHHHHTT---------S
T ss_pred HHHHccc--cHHHHHHHHHHH--------------------------HHHHHHCCcHHHHHHHHHHHHHhC--------C
Confidence 22221 011111122222 2222222 233 4555554443 4
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcc----cchHHHHHhhcCCC--CcHHHHHHHHHHHhhcCC
Q 004414 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAA----HPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHE 271 (755)
Q Consensus 209 ~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~----~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~~~ 271 (755)
++.++..+++++..++.-.. .+...+.. ..+.+.+..++.|+ ++|+.|-+++..+.+...
T Consensus 144 n~~vR~~~~~~l~~~l~~~~---~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 144 NPQVREECAEWLAIILEKWG---SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp -HHHHHHHHHHHHHHHTT--------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHcc---chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 56799999999998887421 01222222 45777888888764 679999999888766543
No 52
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.50 E-value=74 Score=35.40 Aligned_cols=237 Identities=10% Similarity=0.106 Sum_probs=130.5
Q ss_pred HHHHHHHhhhhhccccCCccchHHHHHHHHHh---ccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh-CccchHHHHHHH
Q 004414 459 TKLFALNVVSEVVLQEGQAFDFSVIMQLVAVL---SASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLLLFL 534 (755)
Q Consensus 459 A~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l---~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~-~p~~l~~~l~~l 534 (755)
++|.++.+++=+...++. +.+-++++.+ .+++.. .+||.+ |+.+...+.--+. -..+...++..+
T Consensus 62 GgLiGlAA~~iaLg~~~~----~Y~~~iv~Pv~~cf~D~d~------~vRyyA-CEsLYNiaKv~k~~v~~~Fn~iFdvL 130 (675)
T KOG0212|consen 62 GGLIGLAAVAIALGIKDA----GYLEKIVPPVLNCFSDQDS------QVRYYA-CESLYNIAKVAKGEVLVYFNEIFDVL 130 (675)
T ss_pred chHHHHHHHHHHhccccH----HHHHHhhHHHHHhccCccc------eeeeHh-HHHHHHHHHHhccCcccchHHHHHHH
Confidence 999999988766654332 3333333322 233322 378876 5777766653321 234666777777
Q ss_pred HHhcccCc-hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHH
Q 004414 535 AAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLA 613 (755)
Q Consensus 535 ~~~l~~p~-v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~ 613 (755)
.+-..|++ -...+|..+.++.++-...=...+.++.+..+... .-+..++..|..+++=+..+- ..|+-+. -.|+.
T Consensus 131 ~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~e-riy~~n~~tR~flv~Wl~~Ld-s~P~~~m-~~yl~ 207 (675)
T KOG0212|consen 131 CKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRE-RIYVINPMTRQFLVSWLYVLD-SVPDLEM-ISYLP 207 (675)
T ss_pred HHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHH-HHhcCCchHHHHHHHHHHHHh-cCCcHHH-Hhcch
Confidence 77666655 23556777777776643221112356666655543 124557888999998886654 4566543 46666
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004414 614 RLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR 693 (755)
Q Consensus 614 ~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~ 693 (755)
.+++.+++- +.... +. +..+.. .+|+.+......+. .+ .-..+..+++..=+
T Consensus 208 ~~ldGLf~~----LsD~s-------~e-----Vr~~~~--t~l~~fL~eI~s~P---~s------~d~~~~i~vlv~~l- 259 (675)
T KOG0212|consen 208 SLLDGLFNM----LSDSS-------DE-----VRTLTD--TLLSEFLAEIRSSP---SS------MDYDDMINVLVPHL- 259 (675)
T ss_pred HHHHHHHHH----hcCCc-------HH-----HHHHHH--HHHHHHHHHHhcCc---cc------cCcccchhhccccc-
Confidence 665555544 43221 10 010111 12223222222110 00 00111223332222
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhhc
Q 004414 694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSF 739 (755)
Q Consensus 694 ~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~~~ 739 (755)
-.+++++...+...+..++...|.++.|+++.++..++.+...+
T Consensus 260 --~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~ 303 (675)
T KOG0212|consen 260 --QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT 303 (675)
T ss_pred --cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC
Confidence 23467777788888888889999999999999988888766665
No 53
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.39 E-value=66 Score=40.12 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=63.0
Q ss_pred CCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh----Ccc
Q 004414 450 VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA----FQT 525 (755)
Q Consensus 450 ~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~----~p~ 525 (755)
.+..|-..-.+-|.++++++...+..+ |.+.++|+.+-+...++.. .|+.... .+-+.. +.. -.+
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~----p~l~kLIPrLyRY~yDP~~---~Vq~aM~-sIW~~L---i~D~k~~vd~ 1035 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLE----PYLKKLIPRLYRYQYDPDK---KVQDAMT-SIWNAL---ITDSKKVVDE 1035 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhh----hHHHHhhHHHhhhccCCcH---HHHHHHH-HHHHHh---ccChHHHHHH
Confidence 467799999999999999987654333 7788888887643222211 1333211 221111 111 124
Q ss_pred chHHHHHHHHHhcccCc--hHHHHHHHHHHHHHH
Q 004414 526 NARPLLLFLAAGISEAV--SSNACASALRKICED 557 (755)
Q Consensus 526 ~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~ 557 (755)
|+-.++.=|+.++.+.+ |+.++|.|+..+...
T Consensus 1036 y~neIl~eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1036 YLNEILDELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 67778888888888865 899999999988755
No 54
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.05 E-value=52 Score=34.40 Aligned_cols=144 Identities=14% Similarity=0.133 Sum_probs=82.6
Q ss_pred CCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHH
Q 004414 450 VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARP 529 (755)
Q Consensus 450 ~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~ 529 (755)
.+.+-++.|.++.-|....|.++...+-..+.-+..++. ..+++.. -+|..+ +++||... .+||..-..
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~------~lR~~A-a~Vigt~~---qNNP~~Qe~ 161 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDA------ELRELA-ARVIGTAV---QNNPKSQEQ 161 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcH------HHHHHH-HHHHHHHH---hcCHHHHHH
Confidence 457899999999999999998864322111112333444 4455543 278777 49999876 677753332
Q ss_pred H-----HHHHHHhcc--cCc-hHHHHHHHHHHHHHHhhcccCCCch--HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 004414 530 L-----LLFLAAGIS--EAV-SSNACASALRKICEDASALIDEPSN--LEILMWIGEALEKRHLPLEDEEEVVGAISLIL 599 (755)
Q Consensus 530 ~-----l~~l~~~l~--~p~-v~~~Aa~al~~l~~~c~~~l~~~~~--~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (755)
+ +.-|+..+. +|. ++..|-.|+..+...-..-.. .+ ++.+.-+...+.....+...+.+++.=++.++
T Consensus 162 v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~--~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 162 VIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQD--EFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHH--HHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 2 333444443 233 556666666666544322110 01 11122233333344456677889999999999
Q ss_pred ccCCchH
Q 004414 600 GSVSNKE 606 (755)
Q Consensus 600 ~~~p~~~ 606 (755)
...+.++
T Consensus 240 ~~~~s~~ 246 (342)
T KOG2160|consen 240 QEDKSDE 246 (342)
T ss_pred Hhhhhhh
Confidence 8876654
No 55
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=80.18 E-value=58 Score=35.86 Aligned_cols=204 Identities=16% Similarity=0.146 Sum_probs=91.6
Q ss_pred chHHHHHHHHHhcccCch--HHHHHHHHHHHHHHhhcccCCCchHHHHHHHH---HHHHhcCCChhhHHHHHHHHHHHHc
Q 004414 526 NARPLLLFLAAGISEAVS--SNACASALRKICEDASALIDEPSNLEILMWIG---EALEKRHLPLEDEEEVVGAISLILG 600 (755)
Q Consensus 526 ~l~~~l~~l~~~l~~p~v--~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~---~~l~~~~l~~~~~~~l~eai~~vi~ 600 (755)
++.+++.-++..+..+.. -..--+++++++..++..+. |.....+..+. ....+..-++.-..+++|++|.+|.
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~-p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir 101 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDIL-PIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIR 101 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTG-GGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Confidence 445666666666654321 23445677777777666653 33333333333 2222333345568899999999998
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHh---hhhhcccccc----cC-CCCCC
Q 004414 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYR---MGTVFSHLPV----PL-PTNPA 672 (755)
Q Consensus 601 ~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~---L~~~f~~l~~----~~-~~~~~ 672 (755)
.....+ .+.+..+-+.++.-++.+++++..+ =..|.-++-..+-..+. +...|..+-+ +. -...+
T Consensus 102 ~~~~~~--~~~v~~~E~~L~P~f~~ILq~dV~E-----F~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~g 174 (435)
T PF03378_consen 102 FVCEAD--PEAVSQFEEALFPPFQEILQQDVQE-----FIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRG 174 (435)
T ss_dssp HS-GGG--HH---HHHHHHHHHHHHHHHTT-TT-----THHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTT
T ss_pred hccCCC--hhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCC
Confidence 765432 2323333334444444555544321 01121111111111111 1111111110 00 00011
Q ss_pred CCchHHHHH-----------------HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhh-hHhhHHHHHHHHHH
Q 004414 673 GDDPIFALL-----------------RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQH-FVTLLPQVLDCLST 734 (755)
Q Consensus 673 ~~~p~~~~~-----------------~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~-~~~~l~~~~~~l~~ 734 (755)
.-.+++.++ +.++.++..++..+ .-=...+.++..++..++.. ..||+++++..+.+
T Consensus 175 niPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk-----~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~ 249 (435)
T PF03378_consen 175 NIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK-----ANDHYGFDLLESIVENLPPEALEPYLKQIFTLLLT 249 (435)
T ss_dssp THHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T-----TCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC-----CcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 111122222 22333333333321 11134678899999988884 78999999999998
Q ss_pred HHhhcCCcc
Q 004414 735 NFVSFQNHE 743 (755)
Q Consensus 735 ~f~~~~~~s 743 (755)
-.+.+ +-.
T Consensus 250 RLq~s-kT~ 257 (435)
T PF03378_consen 250 RLQSS-KTE 257 (435)
T ss_dssp HHHHC---H
T ss_pred HHhhC-CcH
Confidence 77654 433
No 56
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=79.14 E-value=1e+02 Score=33.99 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=105.1
Q ss_pred hhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHH
Q 004414 145 GNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWV 224 (755)
Q Consensus 145 ~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi 224 (755)
...++++++..+.|++... .....+++...+..+..++ .++...--.++++..-|
T Consensus 46 lMk~iMRvl~~~~e~~~p~------------------~~~il~~L~~il~~v~kNP-------snP~FnHylFEsi~~li 100 (435)
T PF03378_consen 46 LMKCIMRVLSVLQEDILPI------------------AVEILQHLTAILKEVSKNP-------SNPRFNHYLFESIGALI 100 (435)
T ss_dssp HHHHHHHHHHHSTTTTGGG------------------HHHHHHHHHHHHHHHHTS----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH------------------HHHHHHHHHHHHHHHHhCC-------CCcchhhhHHHHHHHHH
Confidence 5678888888888887421 0112233333443333332 35678888899999999
Q ss_pred HhccccccCcchh--cccchHHHHHhhcCCC--CcHHHHHHHHHHHhhcCC--C---hhHHHHHhhhhhHHHhhhhhhcC
Q 004414 225 RAGCFTEISQGSL--AAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHE--G---LPQALLCRVPFLKELLLLPALTD 295 (755)
Q Consensus 225 ~~~~~~~~~~~~~--~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~~~--~---~~~~l~~~~~~l~~~~~~~~~~~ 295 (755)
++.|. -+.+.+ ....+++.+-..|+++ |..-.+.+.+.-+++.+. . ....+++.++. ...-
T Consensus 101 r~~~~--~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~-------p~lW- 170 (435)
T PF03378_consen 101 RFVCE--ADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLS-------PALW- 170 (435)
T ss_dssp HHS-G--GGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTS-------GGGG-
T ss_pred HhccC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcC-------cchh-
Confidence 98652 122211 2345666666777653 556667777777777654 2 22334443332 1111
Q ss_pred CCHHHHhHHHHHHHHHHHHhhHHHHhcC--hhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhh
Q 004414 296 GDEKVIGGLACLMSEIGQAAPSLIVEAS--PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK 373 (755)
Q Consensus 296 ~d~e~~~~l~~l~~~l~e~~~~~l~~~~--~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~ 373 (755)
+....+-++.|++.++.......+..+. ...+++++-++ +... -....|+....+.+++ +
T Consensus 171 e~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi---~sk~----~D~~gF~LL~~iv~~~---p-------- 232 (435)
T PF03378_consen 171 ERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLI---ASKA----NDHYGFDLLESIVENL---P-------- 232 (435)
T ss_dssp GSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHH---T-TT----CHHHHHHHHHHHHHHS------------
T ss_pred ccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHH---CCCC----cchHHHHHHHHHHHHC---C--------
Confidence 1223456888999888887777775432 23344444444 4422 1134565555555443 2
Q ss_pred hhhhhhHHHHHHHHHHHHHHhc
Q 004414 374 HVEDMFFSVFSALLDALLLRAQ 395 (755)
Q Consensus 374 ~~~~~~~~~~~~Ll~~l~~k~~ 395 (755)
.+.+.|++..++..++.|++
T Consensus 233 --~~~l~~yl~~I~~lll~RLq 252 (435)
T PF03378_consen 233 --PEALEPYLKQIFTLLLTRLQ 252 (435)
T ss_dssp --HHHHGGGHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHh
Confidence 23456677888888888886
No 57
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.96 E-value=56 Score=38.16 Aligned_cols=177 Identities=13% Similarity=0.101 Sum_probs=104.8
Q ss_pred HHHhhHHHHHhC--cc--chHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCCh
Q 004414 512 VIGSYSKWISAF--QT--NARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPL 585 (755)
Q Consensus 512 ~ig~y~~~~~~~--p~--~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~ 585 (755)
.+....+|+.++ .+ +...++..++..+.|.+ |--.|-.++..+|+--.+. .++.+..-|.+- +.....
T Consensus 747 gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~-----il~dL~e~Y~s~-k~k~~~ 820 (982)
T KOG4653|consen 747 GLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED-----ILPDLSEEYLSE-KKKLQT 820 (982)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh-----hHHHHHHHHHhc-ccCCCc
Confidence 344556777743 22 45688999999998754 7788889999999874443 456677777653 333346
Q ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccc
Q 004414 586 EDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPV 665 (755)
Q Consensus 586 ~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~ 665 (755)
+.+.++=|+++.++.+. .+.......++++..-..+..+ ++..+ ++++..+|.+.+-+..
T Consensus 821 d~~lkVGEai~k~~qa~------Gel~~~y~~~Li~tfl~gvrep-d~~~R-------------aSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 821 DYRLKVGEAILKVAQAL------GELVFKYKAVLINTFLSGVREP-DHEFR-------------ASSLANLGQLCQLLAF 880 (982)
T ss_pred cceehHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHhcCCc-hHHHH-------------HhHHHHHHHHHHHHhh
Confidence 78899999999999874 3444455556666655544411 11011 1122222222111111
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHH
Q 004414 666 PLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLP 726 (755)
Q Consensus 666 ~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~ 726 (755)
. +-..+-+...-+..+.+ -.+.+-+..++..+++......|.++.|++.
T Consensus 881 ~----------vsd~~~ev~~~Il~l~~--~d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 881 Q----------VSDFFHEVLQLILSLET--TDGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred h----------hhHHHHHHHHHHHHHHc--cCCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 0 00112222222222222 3455677889999999999999999998664
No 58
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.05 E-value=14 Score=34.65 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=60.0
Q ss_pred HHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcc-cCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc
Q 004414 45 ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE-GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV 123 (755)
Q Consensus 45 ~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~-~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~ 123 (755)
...+|.+.+ ...|+.|+..++.-+... |.-+-......++. |+..+.+ ..+..++.-.|.+++.++.+..
T Consensus 30 i~~LL~s~~------~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~-Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 30 INSLLQSKS------AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRA-LLSILEK--PDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHhCCCC------hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHcC--CCCHHHHHHHHHHHHHHHHHhc
Confidence 556675543 588999999999999986 76665555444444 6677665 4667788889999999998888
Q ss_pred ccCchHHHHH
Q 004414 124 EHGKPIEKLF 133 (755)
Q Consensus 124 ~W~~~i~~li 133 (755)
+||++.+++.
T Consensus 101 ~~p~l~Rei~ 110 (165)
T PF08167_consen 101 GKPTLTREIA 110 (165)
T ss_pred CCCchHHHHh
Confidence 9999877764
No 59
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=76.98 E-value=1.3e+02 Score=33.62 Aligned_cols=172 Identities=15% Similarity=0.128 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHH
Q 004414 543 SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEA 622 (755)
Q Consensus 543 v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~ 622 (755)
+++.-+.-+..+....++.+- +..+.|+.+.-.+....-+.-....++.+||.+...+ ++....|...+.+ .
T Consensus 572 lqSN~~~vl~aiir~~~~~ie--~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl--~e~Fe~y~~~fiP----y 643 (858)
T COG5215 572 LQSNYIGVLEAIIRTRRRDIE--DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSL--EERFEQYASKFIP----Y 643 (858)
T ss_pred HHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH--HHHHHHHHhhhhH----H
Confidence 455556666666666666652 2555566554333222222234567788888887653 2223445555443 3
Q ss_pred HHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHH
Q 004414 623 IGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNL 702 (755)
Q Consensus 623 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v 702 (755)
|...++... .+ -+..++..+ +.+-+.+..+ +..+...++..+.+.+.+ -..+-++
T Consensus 644 l~~aln~~d------~~-----v~~~avglv---gdlantl~~d----------f~~y~d~~ms~LvQ~lss-~~~~R~l 698 (858)
T COG5215 644 LTRALNCTD------RF-----VLNSAVGLV---GDLANTLGTD----------FNIYADVLMSSLVQCLSS-EATHRDL 698 (858)
T ss_pred HHHHhcchh------HH-----HHHHHHHHH---HHHHHHhhhh----------HHHHHHHHHHHHHHHhcC-hhhcccc
Confidence 333332211 11 112223333 3333444432 233446667777777764 3346678
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhhcCCccceeee
Q 004414 703 STAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRT 748 (755)
Q Consensus 703 ~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~~~~~~s~~l~~ 748 (755)
.-++..+|+-+...+|..|.|||..++-.+.+.=+. .||+.=+|+
T Consensus 699 KPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~-~p~~~~~~~ 743 (858)
T COG5215 699 KPAILSVFGDIALAIGANFESYLDMIMMLFQQASEL-DPHSDEVYV 743 (858)
T ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-CCCCCceeH
Confidence 889999999999999999999999888777765544 588876665
No 60
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=76.07 E-value=75 Score=35.38 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-ChHHHHHH----HHhhcCCCCCCCcchhHHHHHHHHHHHHHhccc
Q 004414 4 DLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQ-TDAAWEIA----TSILTSDRQSFLTDFEVEFFAAQILKRKIQNEG 78 (755)
Q Consensus 4 ~~~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~-s~~aw~~~----~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~ 78 (755)
+..+++.++++.|..++....|=.|-..|+++.. .|+-..+| ..|.... +-.+-.||..||-..
T Consensus 299 ~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~------Nr~IstyAITtLLKT----- 367 (898)
T COG5240 299 QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDE------NRTISTYAITTLLKT----- 367 (898)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcc------cccchHHHHHHHHHc-----
Confidence 3456677777777777777788888888887643 46544444 3344333 236788888887441
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHhhc
Q 004414 79 YYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQN 138 (755)
Q Consensus 79 ~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~-~W~~~i~~li~~~~~ 138 (755)
-+++....|-+.+-..+...+.+-+.| ...++-.+.+.++ .|...+..+.+.+-.
T Consensus 368 --Gt~e~idrLv~~I~sfvhD~SD~FKiI---~ida~rsLsl~Fp~k~~s~l~FL~~~L~~ 423 (898)
T COG5240 368 --GTEETIDRLVNLIPSFVHDMSDGFKII---AIDALRSLSLLFPSKKLSYLDFLGSSLLQ 423 (898)
T ss_pred --CchhhHHHHHHHHHHHHHhhccCceEE---eHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 345566555555555554433343333 2223333335555 466655555555543
No 61
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=74.13 E-value=1.4e+02 Score=32.68 Aligned_cols=209 Identities=13% Similarity=0.140 Sum_probs=120.1
Q ss_pred CChhhhHHHHHHHHhhhhhccccCCccchHHHHH-HHHHh--ccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchH
Q 004414 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQ-LVAVL--SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR 528 (755)
Q Consensus 452 ~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~-ll~~l--~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~ 528 (755)
.++...-+++.++.++.--...++. +..++. +...+ ...+..+.. .+. ...|+.... +.++...-.
T Consensus 202 ~~~~~~~~~~~~la~LvNK~~~~~~---l~~~l~~~~~~~~~~~~~~~~~~---~~~--~~~Wi~KaL---v~R~~~~~~ 270 (415)
T PF12460_consen 202 EDEFSRLAALQLLASLVNKWPDDDD---LDEFLDSLLQSISSSEDSELRPQ---ALE--ILIWITKAL---VMRGHPLAT 270 (415)
T ss_pred CChHHHHHHHHHHHHHHcCCCChhh---HHHHHHHHHhhhcccCCcchhHH---HHH--HHHHHHHHH---HHcCCchHH
Confidence 3466777888888887655443322 344444 33334 111111111 111 112443322 233334455
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHH
Q 004414 529 PLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELK 608 (755)
Q Consensus 529 ~~l~~l~~~l~~p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~ 608 (755)
..++.++..+.+++++..||++|.-+..+....+.. .. + +..+++- +
T Consensus 271 ~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~-~~-------------~------------a~vklLy-------k 317 (415)
T PF12460_consen 271 ELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNK-EN-------------H------------ANVKLLY-------K 317 (415)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCc-cc-------------c------------chhhhHH-------h
Confidence 667778888888999999999999999875544421 00 0 0111111 2
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHH
Q 004414 609 NNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPML 688 (755)
Q Consensus 609 ~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l 688 (755)
.+.+..+++++++..+..-.. .. ...+..|+.+.++++. .-+.+.+.++.|++
T Consensus 318 QR~F~~~~p~L~~~~~~~~~~--------~k----------~~yL~ALs~ll~~vP~---------~vl~~~l~~LlPLL 370 (415)
T PF12460_consen 318 QRFFTQVLPKLLEGFKEADDE--------IK----------SNYLTALSHLLKNVPK---------SVLLPELPTLLPLL 370 (415)
T ss_pred HHHHHHHHHHHHHHHhhcChh--------hH----------HHHHHHHHHHHhhCCH---------HHHHHHHHHHHHHH
Confidence 344555555555544442110 00 1123345555554432 22466778899998
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHH
Q 004414 689 EKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLST 734 (755)
Q Consensus 689 ~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~ 734 (755)
-+.+.. .+.++...+...+..+++.-.+-+.+++..+++.+++
T Consensus 371 lqsL~~---~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 371 LQSLSL---PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHhCC---CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 888862 4677888999999999998888888899988888875
No 62
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=72.55 E-value=1.9e+02 Score=33.48 Aligned_cols=307 Identities=14% Similarity=0.113 Sum_probs=150.4
Q ss_pred CchHHHHHHHHhHHHHHHHHhcCcHH----HHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHH
Q 004414 410 PDGLVQFRMNLVELLVDICQLLRSAT----FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQ 485 (755)
Q Consensus 410 ~d~f~~~R~~~~d~l~~~~~~l~~~~----~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ 485 (755)
.|+=+.||+-+.+++..+...+|... .-..++..+.... +.++= +.-..|-+++.+...+..--.++ +++|.+
T Consensus 726 kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Af-qeqtt-~d~vml~gfg~V~~~lg~r~kpy-lpqi~s 802 (1172)
T KOG0213|consen 726 KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAF-QEQTT-EDSVMLLGFGTVVNALGGRVKPY-LPQICS 802 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH-Hhccc-chhhhhhhHHHHHHHHhhccccc-hHHHHH
Confidence 34456789999999999888877421 1122222221100 00110 11145667777766554322322 466665
Q ss_pred HHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCcc--chHHHHHHHHHhcc--cCchHHHHHHHHHHHHHHhhc-
Q 004414 486 LVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT--NARPLLLFLAAGIS--EAVSSNACASALRKICEDASA- 560 (755)
Q Consensus 486 ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~--~l~~~l~~l~~~l~--~p~v~~~Aa~al~~l~~~c~~- 560 (755)
-+....+++++ -+|..++ .++|+.+.-++...+ .+..+=..|...+. .|++-..--.|+..++..-.-
T Consensus 803 tiL~rLnnksa------~vRqqaa-dlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 803 TILWRLNNKSA------KVRQQAA-DLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHhcCCCh------hHHHHHH-HHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 54444555554 2677775 999999998876543 23322233345565 377766666777777755421
Q ss_pred ccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCh
Q 004414 561 LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPA 640 (755)
Q Consensus 561 ~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~ 640 (755)
.+. |+.-++|-.+...|.+. ..+.+...+.-+|.|...-|.--- ..--.+++=.+++-|...-..--.. ..+..
T Consensus 876 km~-pPi~dllPrltPILknr--heKVqen~IdLvg~IadrgpE~v~-aREWMRIcfeLlelLkahkK~iRRa--a~nTf 949 (1172)
T KOG0213|consen 876 KMT-PPIKDLLPRLTPILKNR--HEKVQENCIDLVGTIADRGPEYVS-AREWMRICFELLELLKAHKKEIRRA--AVNTF 949 (1172)
T ss_pred ccC-CChhhhcccchHhhhhh--HHHHHHHHHHHHHHHHhcCcccCC-HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhh
Confidence 121 33333322222222111 234567777788888766554211 1113344545555444431110000 00000
Q ss_pred hHHHHHHHHHHHHHhhhhhcccccccCC-CCCCCCchHHHHH-HH--HHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHH
Q 004414 641 TYTQILSSATRGLYRMGTVFSHLPVPLP-TNPAGDDPIFALL-RV--FWPMLEKLFRSEHM-ENGNLSTAACRALSLAIQ 715 (755)
Q Consensus 641 ~~~~~l~~~~~~l~~L~~~f~~l~~~~~-~~~~~~~p~~~~~-~~--~~~~l~~i~~~~~~-~~~~v~e~~~~~~~~~~~ 715 (755)
. .+..++.=.+.|+++..+++.... ......- ...++ +. ...++-.++.. |. ..-.|-.-+.+.+.++|.
T Consensus 950 G---~IakaIGPqdVLatLlnnLkvqeRq~RvcTtv-aIaIVaE~c~pFtVLPalmne-YrtPe~nVQnGVLkalsf~Fe 1024 (1172)
T KOG0213|consen 950 G---YIAKAIGPQDVLATLLNNLKVQERQNRVCTTV-AIAIVAETCGPFTVLPALMNE-YRTPEANVQNGVLKALSFMFE 1024 (1172)
T ss_pred h---HHHHhcCHHHHHHHHHhcchHHHHHhchhhhh-hhhhhhhhcCchhhhHHHHhh-ccCchhHHHHhHHHHHHHHHH
Confidence 1 122333334444555555543110 0000000 11111 22 23345555553 42 233455567788888888
Q ss_pred HHhhhhHhhHHHHHHHHHHHHh
Q 004414 716 SSGQHFVTLLPQVLDCLSTNFV 737 (755)
Q Consensus 716 ~l~~~~~~~l~~~~~~l~~~f~ 737 (755)
-.|+....|+=.+.+.|..+..
T Consensus 1025 yigemskdYiyav~PlleDAlm 1046 (1172)
T KOG0213|consen 1025 YIGEMSKDYIYAVTPLLEDALM 1046 (1172)
T ss_pred HHHHHhhhHHHHhhHHHHHhhc
Confidence 8888888888777777766543
No 63
>PRK09687 putative lyase; Provisional
Probab=70.32 E-value=1.2e+02 Score=31.14 Aligned_cols=134 Identities=12% Similarity=0.026 Sum_probs=79.4
Q ss_pred HHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchh
Q 004414 417 RMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSE 496 (755)
Q Consensus 417 R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~ 496 (755)
|..+...+ .-+|++..+..+...+. ..+|.-+..+.++|+.+.. ++ +.+...+.....++..
T Consensus 145 R~~a~~aL----g~~~~~~ai~~L~~~L~-----d~~~~VR~~A~~aLg~~~~-----~~----~~~~~~L~~~L~D~~~ 206 (280)
T PRK09687 145 RFAVAFAL----SVINDEAAIPLLINLLK-----DPNGDVRNWAAFALNSNKY-----DN----PDIREAFVAMLQDKNE 206 (280)
T ss_pred HHHHHHHH----hccCCHHHHHHHHHHhc-----CCCHHHHHHHHHHHhcCCC-----CC----HHHHHHHHHHhcCCCh
Confidence 55544444 22455555665655442 3567778888888887721 11 3344433333355543
Q ss_pred hhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHH
Q 004414 497 ELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGE 576 (755)
Q Consensus 497 ~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~ 576 (755)
.||..++ +.+|++. ++ .+++.|++.+.++.++..|+.|+-.+-. |..++.|.++..
T Consensus 207 ------~VR~~A~-~aLg~~~-----~~----~av~~Li~~L~~~~~~~~a~~ALg~ig~--------~~a~p~L~~l~~ 262 (280)
T PRK09687 207 ------EIRIEAI-IGLALRK-----DK----RVLSVLIKELKKGTVGDLIIEAAGELGD--------KTLLPVLDTLLY 262 (280)
T ss_pred ------HHHHHHH-HHHHccC-----Ch----hHHHHHHHHHcCCchHHHHHHHHHhcCC--------HhHHHHHHHHHh
Confidence 3777765 8888764 23 5777788888888888777777766543 335566666554
Q ss_pred HHHhcCCChhhHHHHHHHHH
Q 004414 577 ALEKRHLPLEDEEEVVGAIS 596 (755)
Q Consensus 577 ~l~~~~l~~~~~~~l~eai~ 596 (755)
. ..+...+.+.++++.
T Consensus 263 ~----~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 263 K----FDDNEIITKAIDKLK 278 (280)
T ss_pred h----CCChhHHHHHHHHHh
Confidence 2 225556666666653
No 64
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.13 E-value=2.3e+02 Score=33.42 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=31.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhh
Q 004414 673 GDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQH 720 (755)
Q Consensus 673 ~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~ 720 (755)
..|+++ ...|+|..+++. .+...+|.+|.|+-+++..+-+.
T Consensus 329 ~f~~v~----ealPlL~~lLs~---~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 329 EFHFVM----EALPLLTPLLSY---QDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred cchHHH----HHHHHHHHHHhh---ccchhHHHHHHHHHHHHHhcccC
Confidence 345554 457999999984 48899999999999999866553
No 65
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=67.94 E-value=34 Score=27.57 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=43.9
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHH
Q 004414 10 AQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKR 72 (755)
Q Consensus 10 ~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ 72 (755)
...++.|-.++|+..|..|-..|.++. ++++-.....++.++ +..+|..|+..|..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~d~------~~~vr~~a~~aL~~ 57 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLKDE------DPMVRRAAARALGR 57 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHTSS------SHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHcCC------CHHHHHHHHHHHHH
Confidence 345555545789999999999999775 778888888888543 36999999999974
No 66
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.64 E-value=2.5e+02 Score=32.95 Aligned_cols=243 Identities=16% Similarity=0.145 Sum_probs=133.6
Q ss_pred hHHHHHHHHH-hccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Q 004414 480 FSVIMQLVAV-LSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDA 558 (755)
Q Consensus 480 l~~i~~ll~~-l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~v~~~Aa~al~~l~~~c 558 (755)
+..+...+.+ +..+|. +|+++ -+.+.+. ..++.|--.+|+.+-++=.++..+.+|+.+|++.|+.-
T Consensus 4 le~l~~~l~qTl~pdps--------~rk~a-Er~L~~~----e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~ 70 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPS--------VRKPA-ERALRSL----EGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRN 70 (960)
T ss_pred HHHHHHHHHhcCCCCCc--------cCchH-HHHHHHh----ccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhc
Confidence 4555554443 334454 34443 2444433 34577777888888877778889999999999999864
Q ss_pred hcccCCC------chHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH---------------------------------
Q 004414 559 SALIDEP------SNLEILMWIGEALEKRHLPLEDEEEVVGAISLIL--------------------------------- 599 (755)
Q Consensus 559 ~~~l~~~------~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi--------------------------------- 599 (755)
...-.+. ..-+.+...+-.+. -..+..-|..+-|+++.+-
T Consensus 71 W~~~~~~~~~i~~~~~e~ikslIv~lM-l~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~t 149 (960)
T KOG1992|consen 71 WIPAEDSPIKIIEEDREQIKSLIVTLM-LSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVT 149 (960)
T ss_pred cCcCCCCccccchhHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHH
Confidence 3211110 01122222111110 0011222333333333322
Q ss_pred -c----cC---Cc-h----HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhccccccc
Q 004414 600 -G----SV---SN-K----ELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVP 666 (755)
Q Consensus 600 -~----~~---p~-~----~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~ 666 (755)
. .- +. + |. ...++++..|+.+-+++.+........ + ...|+...+.+-.++++|-+++..
T Consensus 150 ahsiFkr~R~efrSdaL~~EI-K~vLd~f~~Plt~Lf~~t~~l~~~~~~--~----~~~l~~lf~vlll~~klfysLn~Q 222 (960)
T KOG1992|consen 150 AHSIFKRYRPEFRSDALWLEI-KLVLDRFAEPLTDLFRKTMELIQRHAN--D----AAALNILFGVLLLICKLFYSLNFQ 222 (960)
T ss_pred HHHHHHhcCcccccHHHHHHH-HHHHHhhHhHHHHHHHHHHHHHhhccc--c----hhHHHHHHHHHHHHHHHHHhhhcc
Confidence 1 10 11 1 22 345666666877777776654322111 1 113555566666667888777752
Q ss_pred CCCCCCCCchH-HHHHHHHHHHHHHHHHh--h-hccc-------hHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHH
Q 004414 667 LPTNPAGDDPI-FALLRVFWPMLEKLFRS--E-HMEN-------GNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTN 735 (755)
Q Consensus 667 ~~~~~~~~~p~-~~~~~~~~~~l~~i~~~--~-~~~~-------~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~ 735 (755)
.-++. -+-++.-|+.+...++- + ..++ ..+.-.+|..+-.-.....+.|.||+|.++.....-
T Consensus 223 ------DiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~L 296 (960)
T KOG1992|consen 223 ------DIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNL 296 (960)
T ss_pred ------cchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Confidence 12233 23556667777666651 0 0111 133446899999999999999999999999888887
Q ss_pred HhhcCCccceeeec
Q 004414 736 FVSFQNHECYIRTG 749 (755)
Q Consensus 736 f~~~~~~s~~l~~~ 749 (755)
...+.++..|=|+.
T Consensus 297 L~~~s~~~kyD~Lv 310 (960)
T KOG1992|consen 297 LVSTSPDTKYDYLV 310 (960)
T ss_pred HHhcCCCccHHHHH
Confidence 77765777664443
No 67
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=66.00 E-value=1.2e+02 Score=28.63 Aligned_cols=118 Identities=9% Similarity=0.010 Sum_probs=62.7
Q ss_pred HHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccch-HHHHHHHHHhcccC--chHHHHHHHHHHHHHHhhccc
Q 004414 486 LVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA-RPLLLFLAAGISEA--VSSNACASALRKICEDASALI 562 (755)
Q Consensus 486 ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l-~~~l~~l~~~l~~p--~v~~~Aa~al~~l~~~c~~~l 562 (755)
.+....+++.+ .||.+++ .++..+. ..+.--. +..+..++..+.|+ +++..|...|..+...-.+..
T Consensus 29 ~l~~~L~D~~~------~VR~~al-~~Ls~Li---~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~ 98 (178)
T PF12717_consen 29 NLYKCLRDEDP------LVRKTAL-LVLSHLI---LEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNI 98 (178)
T ss_pred HHHHHHCCCCH------HHHHHHH-HHHHHHH---HcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchH
Confidence 33334455554 3788774 7777654 2222212 23335556666764 589999999998887732221
Q ss_pred CCCchHHHHHHHHHHHHhc-------CCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 004414 563 DEPSNLEILMWIGEALEKR-------HLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSY 620 (755)
Q Consensus 563 ~~~~~~~~l~~~~~~l~~~-------~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~ 620 (755)
..+.+..+...+.+. ..+.+.+..+++-+-. .++.++.+...++.+++-+.
T Consensus 99 ----i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~---~i~~d~~~~~l~~kl~~~~~ 156 (178)
T PF12717_consen 99 ----IYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLD---FIDKDKQKESLVEKLCQRFL 156 (178)
T ss_pred ----HHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHH---HcCcHHHHHHHHHHHHHHHH
Confidence 334444444444322 2455556666655544 44424333455555554333
No 68
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=65.74 E-value=24 Score=33.43 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH---HHHHhhhhHhhHHHHHHHHHH
Q 004414 677 IFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLA---IQSSGQHFVTLLPQVLDCLST 734 (755)
Q Consensus 677 ~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~---~~~l~~~~~~~l~~~~~~l~~ 734 (755)
+++++-++.+-+...+.. .+++|+.++..++..+ -...|+.+.||+.++++.+--
T Consensus 74 ilPvlPqLI~plk~AL~t---r~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~ 131 (183)
T PF10274_consen 74 ILPVLPQLIIPLKRALNT---RDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNL 131 (183)
T ss_pred HHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 666666665656555553 5899999999999999 558899999999988887764
No 69
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=64.93 E-value=1.2e+02 Score=28.27 Aligned_cols=106 Identities=18% Similarity=0.094 Sum_probs=71.8
Q ss_pred CCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHH
Q 004414 142 QDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLL 221 (755)
Q Consensus 142 ~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~ 221 (755)
++.....++.+++.+.++.+ .+.+.+++...++.+.++++... +..+...++.++.
T Consensus 38 ~~~~rw~G~~Ll~~~~~~~~-----------------~e~l~~~~~~W~~~Ll~~L~~~~-------~~~~~~~ai~~L~ 93 (165)
T PF08167_consen 38 SAYSRWAGLCLLKVTVEQCS-----------------WEILLSHGSQWLRALLSILEKPD-------PPSVLEAAIITLT 93 (165)
T ss_pred ChhhHHHHHHHHHHHHHHhh-----------------HHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHH
Confidence 45678899999999998863 12245567777777777777743 3457788888888
Q ss_pred HHHHhccc-cccCcch--hcccchHHHHHhhcCCCCcHHHHHHHHHHHhhcCC
Q 004414 222 SWVRAGCF-TEISQGS--LAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHE 271 (755)
Q Consensus 222 sWi~~~~~-~~~~~~~--~~~~~ll~~~~~~L~~~~~~~~a~~~l~eii~~~~ 271 (755)
.-+.+... .++..+. -....+++.+++.+.++...+.+++++.+++..+.
T Consensus 94 ~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 94 RLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP 146 (165)
T ss_pred HHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence 87776421 1121121 12345667777777667788899999999999775
No 70
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=64.89 E-value=69 Score=27.50 Aligned_cols=90 Identities=11% Similarity=0.109 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcccCc------hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 004414 528 RPLLLFLAAGISEAV------SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (755)
Q Consensus 528 ~~~l~~l~~~l~~p~------v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (755)
-++++.+-..++|++ -+.+|-+|+..+.+-|++++. .+.+.+..+.+.-.. .++-+...+++-..++..
T Consensus 10 LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~--~a~pQI~acL~saL~---~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 10 LGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS--SALPQIMACLQSALE---IPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHHh
Confidence 345556666666543 378899999999998888874 367766665543211 345688999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHH
Q 004414 602 VSNKELKNNLLARLLSSSYEAI 623 (755)
Q Consensus 602 ~p~~~~~~~~l~~l~~p~~~~l 623 (755)
+++++. ...+++++.-++..+
T Consensus 85 L~~~~l-~~ll~~~~~~i~~~~ 105 (107)
T smart00802 85 LKEEEL-GPLLDQIFAAILPLW 105 (107)
T ss_pred CCHHHH-HHHHHHHHHHHHHhc
Confidence 998764 566666665555443
No 71
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=64.41 E-value=64 Score=27.64 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHH
Q 004414 543 SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEA 622 (755)
Q Consensus 543 v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~ 622 (755)
-+.+|-+++..+.+-|++.+. .+.+.+..+.+.... .++-+...+++-...+..++.++. .+.+++++..++..
T Consensus 31 ek~~~l~si~~lI~~~~~~i~--~~~pQI~a~L~sal~---~~~l~~~al~~W~~fi~~L~~~~l-~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 31 EKKRALRSIEELIKLGGSHIS--SARPQIMACLQSALE---IPELREEALSCWNCFIKTLDEEDL-GPLLDQIFAILLPL 104 (107)
T ss_pred HHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhC---ChhhHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHh
Confidence 578899999999998888874 266666665554222 225688889999999999999874 66666666555544
Q ss_pred H
Q 004414 623 I 623 (755)
Q Consensus 623 l 623 (755)
+
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 3
No 72
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=63.27 E-value=20 Score=29.00 Aligned_cols=57 Identities=25% Similarity=0.148 Sum_probs=43.7
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHH
Q 004414 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQIL 70 (755)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL 70 (755)
++...+..+..++|+..|.+|-..|.++. +++++.....++.+++. ..+|.-|+..|
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~~-----~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDDD-----EVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-SS-----HHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCCc-----HHHHHHHHhhc
Confidence 34444545456789999999999999996 79999999999987643 46788887765
No 73
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=62.26 E-value=2e+02 Score=29.89 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=55.6
Q ss_pred chHHHHHHHHHhcccCc-hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 004414 526 NARPLLLFLAAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (755)
Q Consensus 526 ~l~~~l~~l~~~l~~p~-v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (755)
..-.+|.-|+.++.+|. ++..-..++..+|.+|+-.-. ..+.|-++-.-+....++.+++..++.++..++.-
T Consensus 104 l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~---i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~ 177 (378)
T KOG2753|consen 104 LRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEY---IVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKD 177 (378)
T ss_pred cHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeee---ecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 44567778888998887 889999999999999986532 23344555555556778889999999999998854
No 74
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=62.14 E-value=1.8e+02 Score=32.76 Aligned_cols=155 Identities=21% Similarity=0.174 Sum_probs=88.5
Q ss_pred hhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCCC--cHHHHHHHH
Q 004414 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQS--SFDVAIEVL 263 (755)
Q Consensus 186 ~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~--~~~~a~~~l 263 (755)
.+....++...+.+. ++.++..+++.+..-++.. ..-...+..+.++..+..+|.+++ +...|++++
T Consensus 75 ~~~~~~~L~~gL~h~--------~~~Vr~l~l~~l~~~~~~~---~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L 143 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHP--------SPKVRRLALKQLGRIARHS---EGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKAL 143 (503)
T ss_pred HHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHhcCC---HHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 455667777777763 4578888888877665521 111122457889999999999875 467788888
Q ss_pred HHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCC
Q 004414 264 VELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSED 343 (755)
Q Consensus 264 ~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d 343 (755)
..+..... ..+.+++.-. ...+. ..+...++....++..+++.++......+... ...++++.++...... |
T Consensus 144 ~~l~~~~~-~~~~l~~~~~--~~~L~-~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~--~~sgll~~ll~eL~~d--D 215 (503)
T PF10508_consen 144 KKLASHPE-GLEQLFDSNL--LSKLK-SLMSQSSDIVRCRVYELLVEIASHSPEAAEAV--VNSGLLDLLLKELDSD--D 215 (503)
T ss_pred HHHhCCch-hHHHHhCcch--HHHHH-HHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH--HhccHHHHHHHHhcCc--c
Confidence 88886543 2334432211 11111 12233344444567777777664433322110 0024778888876662 4
Q ss_pred cchhhhcHHHHHHHHH
Q 004414 344 WEIADSTLQFWSTLAS 359 (755)
Q Consensus 344 ~~v~~~~~~FW~~l~~ 359 (755)
.-+..-+++..+.|++
T Consensus 216 iLvqlnalell~~La~ 231 (503)
T PF10508_consen 216 ILVQLNALELLSELAE 231 (503)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4445566666666655
No 75
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=61.67 E-value=3.3e+02 Score=32.11 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=36.9
Q ss_pred HHHHHH--HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHH--HHHHHHHHHHhh
Q 004414 677 IFALLR--VFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLP--QVLDCLSTNFVS 738 (755)
Q Consensus 677 ~~~~~~--~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~--~~~~~l~~~f~~ 738 (755)
+..+++ .+.|.+..++. +-...++++-.++.+++.+.. .+..++++. .+++.+++.|..
T Consensus 525 ~~~ll~~~~llp~L~~~L~-~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~ 587 (708)
T PF05804_consen 525 WAQLLQEYNLLPWLKDLLK-PGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNA 587 (708)
T ss_pred HHHHHHhCCHHHHHHHHhC-CCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHh
Confidence 445554 58899999887 344456777777788876553 455555553 555555555544
No 76
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=60.66 E-value=1.9e+02 Score=29.17 Aligned_cols=133 Identities=8% Similarity=-0.019 Sum_probs=73.5
Q ss_pred CChhhhHHHHHHHHhhhhhccccCCccchH--HHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhC---ccc
Q 004414 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFS--VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF---QTN 526 (755)
Q Consensus 452 ~~W~~~EA~L~~l~~iae~~~~~~~~~~l~--~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~---p~~ 526 (755)
.+-...|.++++++..+..-.. .+ . +. ....++..+.+.|.+ .+|..+ ++++...+.=.... ..+
T Consensus 25 ~dp~i~e~al~al~n~aaf~~n-q~-~-Ir~~Ggi~lI~~lL~~p~~------~vr~~A-L~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFN-QD-I-IRDLGGISLIGSLLNDPNP------SVREKA-LNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred CChHHHHHHHHHHHhhccChhH-HH-H-HHHcCCHHHHHHHcCCCCh------HHHHHH-HHHHHhcCCChhhHHHHHHH
Confidence 4556678899999876542211 00 0 01 134456666666665 356555 47777665322211 125
Q ss_pred hHHHHHHHHHhcccCchHHHHHHHHHHHHHH--hhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 004414 527 ARPLLLFLAAGISEAVSSNACASALRKICED--ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (755)
Q Consensus 527 l~~~l~~l~~~l~~p~v~~~Aa~al~~l~~~--c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (755)
++.+..-+..+-.+..++.++-+++.+++-. ....+. .+++.|..+.. .+ +...+..+++.+..+.+.
T Consensus 95 i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~---~G--~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 95 IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLS---SG--SEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHH---cC--ChHHHHHHHHHHHHhccC
Confidence 5555555555434567888888999988633 222232 25555555433 23 445677777777666543
No 77
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.65 E-value=3.5e+02 Score=32.08 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchH--HHHHHHHHhccc---CchHHHHHHHHHHHH
Q 004414 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR--PLLLFLAAGISE---AVSSNACASALRKIC 555 (755)
Q Consensus 481 ~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~--~~l~~l~~~l~~---p~v~~~Aa~al~~l~ 555 (755)
..+...|..|.+|.+.. .++.-+ |+++.-+++-+.+.-..+- .+++.|+..|.. =+|+..+-.|+.+|.
T Consensus 210 ~slvp~Lv~LL~~E~n~-----DIMl~A-cRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS 283 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNF-----DIMLLA-CRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKIS 283 (1051)
T ss_pred HHHHHHHHHHHhccccH-----HHHHHH-HHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 34445555566666542 244444 5777766655433222332 366677766654 348899999999999
Q ss_pred HHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchH
Q 004414 556 EDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKE 606 (755)
Q Consensus 556 ~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~ 606 (755)
.+-.+.+.....+.+.+...+.| +...|...+.-++.....+++|+
T Consensus 284 R~H~~AiL~AG~l~a~LsylDFF-----Si~aQR~AlaiaaN~Cksi~sd~ 329 (1051)
T KOG0168|consen 284 RRHPKAILQAGALSAVLSYLDFF-----SIHAQRVALAIAANCCKSIRSDE 329 (1051)
T ss_pred hhccHHHHhcccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCcc
Confidence 87665544334455555544444 33456666777777777888876
No 78
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=60.39 E-value=25 Score=36.25 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=57.3
Q ss_pred hhhhHHHHHHHHhhhhhcc-------ccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCcc-
Q 004414 454 WKEVETKLFALNVVSEVVL-------QEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT- 525 (755)
Q Consensus 454 W~~~EA~L~~l~~iae~~~-------~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~- 525 (755)
=.-+|-++|+|+.+|..-. ..+. +..++.++. .+.++.. .+|.. .|+++.+++ .++|.
T Consensus 171 ~~V~eQavWALGNiAGDS~~~RD~vL~~ga---leplL~ll~--ss~~~is-----mlRn~--TWtLSNlcR--GknP~P 236 (526)
T COG5064 171 DDVREQAVWALGNIAGDSEGCRDYVLQCGA---LEPLLGLLL--SSAIHIS-----MLRNA--TWTLSNLCR--GKNPPP 236 (526)
T ss_pred HHHHHHHHHHhccccCCchhHHHHHHhcCc---hHHHHHHHH--hccchHH-----HHHHh--HHHHHHhhC--CCCCCC
Confidence 4467899999999874221 1111 233444433 2333321 24443 499999986 56664
Q ss_pred ---chHHHHHHHHHhc--ccCchHHHHHHHHHHHHHH
Q 004414 526 ---NARPLLLFLAAGI--SEAVSSNACASALRKICED 557 (755)
Q Consensus 526 ---~l~~~l~~l~~~l--~~p~v~~~Aa~al~~l~~~ 557 (755)
.+..+++.|.+-+ .||++-.-||.|+..+.+.
T Consensus 237 ~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 237 DWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG 273 (526)
T ss_pred chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC
Confidence 5677888877654 4788999999999998744
No 79
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=58.98 E-value=34 Score=30.85 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=31.6
Q ss_pred HHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccCchHHHHHHHH
Q 004414 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASAL 551 (755)
Q Consensus 504 v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~v~~~Aa~al 551 (755)
+...+ +.++++|..|+....-.-.+.++.+++.+.+|.++..|+..+
T Consensus 102 ~~~~~-L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 102 LVKAA-LKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHH-HHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 34444 588888888875322122347888888889999988888764
No 80
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=58.70 E-value=24 Score=40.34 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=34.6
Q ss_pred hccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHH
Q 004414 696 HMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNF 736 (755)
Q Consensus 696 ~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f 736 (755)
+..+..|.-++.=+|-|.+..+++++.||+..++..+-...
T Consensus 545 hn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 545 HNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888999999999999999999998888877766
No 81
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=56.83 E-value=4.1e+02 Score=31.72 Aligned_cols=132 Identities=10% Similarity=0.114 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHH----HHHhC-ccchHHHHHHHHHhcccCchHHHHHHHHHHH
Q 004414 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSK----WISAF-QTNARPLLLFLAAGISEAVSSNACASALRKI 554 (755)
Q Consensus 480 l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~----~~~~~-p~~l~~~l~~l~~~l~~p~v~~~Aa~al~~l 554 (755)
+|.+...+.++.........+ + +|++++..+. +-... ...+|-.++.+++.-.||-|..-+-..|..+
T Consensus 528 ~p~ild~L~qlas~~s~evl~---l----lmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el 600 (1005)
T KOG2274|consen 528 QPMILDGLLQLASKSSDEVLV---L----LMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEEL 600 (1005)
T ss_pred chHHHHHHHHHcccccHHHHH---H----HHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 356666666655444332211 1 2344444433 22222 2356777777788888998889999999999
Q ss_pred HHH--hhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 004414 555 CED--ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYE 621 (755)
Q Consensus 555 ~~~--c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~ 621 (755)
|.. |..++-+ ..++.|.++... .....+.......++-+..++.+-|++- -...+...+.|++.
T Consensus 601 ~q~~~~~g~m~e-~~iPslisil~~-~~~~~~~~l~~~aidvLttvvr~tp~pL-~~~l~~~~FpaVak 666 (1005)
T KOG2274|consen 601 LQIAANYGPMQE-RLIPSLISVLQL-NADKAPAGLCAIAIDVLTTVLRNTPSPL-PNLLICYAFPAVAK 666 (1005)
T ss_pred HHHHHhhcchHH-HHHHHHHHHHcC-cccccCchhhHHHHHHHHHHHhcCCCCc-cHHHHHHHhHHhHh
Confidence 964 4443321 234555554432 1223334456667777888888777662 12334444444433
No 82
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=56.62 E-value=21 Score=22.54 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=18.7
Q ss_pred HHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHH
Q 004414 484 MQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSK 518 (755)
Q Consensus 484 ~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~ 518 (755)
+..+..+.++|.+ .||.+++ +++|+.++
T Consensus 2 lp~l~~~l~D~~~------~VR~~a~-~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSP------EVRQAAA-ECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSH------HHHHHHH-HHHHHHHH
T ss_pred HHHHHHHcCCCCH------HHHHHHH-HHHHHHHh
Confidence 3444455667775 3888875 99998875
No 83
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=56.38 E-value=1.3e+02 Score=25.77 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHHHHHhh-hhHhhHHHHHHHHHHHH
Q 004414 699 NGNLSTAACRALSLAIQSSGQ-HFVTLLPQVLDCLSTNF 736 (755)
Q Consensus 699 ~~~v~e~~~~~~~~~~~~l~~-~~~~~l~~~~~~l~~~f 736 (755)
.+++.+.+++++..++++++. +.+|++++++-.++..+
T Consensus 67 ~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 67 IPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred ChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 569999999999999999988 58889988887777654
No 84
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=56.26 E-value=5.3e+02 Score=32.83 Aligned_cols=262 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccCc
Q 004414 463 ALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV 542 (755)
Q Consensus 463 ~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~ 542 (755)
|+.+++..+..+.....-+.+-.-+-+=..+.+. .||-+++ +++|+|- ..+|++.+.....+..++.|+.
T Consensus 836 AlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dssa------sVREAal-dLvGrfv---l~~~e~~~qyY~~i~erIlDtg 905 (1692)
T KOG1020|consen 836 ALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSA------SVREAAL-DLVGRFV---LSIPELIFQYYDQIIERILDTG 905 (1692)
T ss_pred HHHHHHHHHhcChHhhcCHHHHHHHHHhhccchh------HHHHHHH-HHHhhhh---hccHHHHHHHHHHHHhhcCCCc
Q ss_pred --hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcC--------------------------------------
Q 004414 543 --SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRH-------------------------------------- 582 (755)
Q Consensus 543 --v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~-------------------------------------- 582 (755)
|+.++-+-++.+|+.-+..-. ..+....+........
T Consensus 906 vsVRKRvIKIlrdic~e~pdf~~---i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~v 982 (1692)
T KOG1020|consen 906 VSVRKRVIKILRDICEETPDFSK---IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDV 982 (1692)
T ss_pred hhHHHHHHHHHHHHHHhCCChhh---HHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHH
Q ss_pred ------CChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCC--CCCChhHHHHHHHHHHHHH
Q 004414 583 ------LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSL--IHNPATYTQILSSATRGLY 654 (755)
Q Consensus 583 ------l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~l~ 654 (755)
+..+-...++..|-..-.....+....+.......+.++-+..++......-. ..+.......+...+..|+
T Consensus 983 v~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~ 1062 (1692)
T KOG1020|consen 983 VMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLF 1062 (1692)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHH
Q ss_pred hhhhhcccccc--------cCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhh----hhH
Q 004414 655 RMGTVFSHLPV--------PLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ----HFV 722 (755)
Q Consensus 655 ~L~~~f~~l~~--------~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~----~~~ 722 (755)
-++.++..+-. |.-........-..++..+..+++.++...-..+..+.+.+=.-+.+.+...|. ++.
T Consensus 1063 ~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~v 1142 (1692)
T KOG1020|consen 1063 VFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAV 1142 (1692)
T ss_pred HHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHH
Q ss_pred hhHHHHHHHHHHHHh
Q 004414 723 TLLPQVLDCLSTNFV 737 (755)
Q Consensus 723 ~~l~~~~~~l~~~f~ 737 (755)
|.+..++.....+|+
T Consensus 1143 sCl~sl~~k~~~~~~ 1157 (1692)
T KOG1020|consen 1143 SCLGSLATKRTDGAK 1157 (1692)
T ss_pred HHHHHHHhhhccchH
No 85
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=54.74 E-value=1.9e+02 Score=27.27 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=38.4
Q ss_pred HHHHhhHHHHHhCccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHH
Q 004414 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED 557 (755)
Q Consensus 511 ~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~ 557 (755)
.++..++++..++|..+.+.++.+...|.|+. |+..|...+.++...
T Consensus 7 n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 7 NAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 44455556667899999999999999999864 899999999998765
No 86
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=54.72 E-value=5.1e+02 Score=32.16 Aligned_cols=296 Identities=14% Similarity=0.131 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHHHhcChH-------HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 004414 22 SCNRVAANQWLVQFQQTDA-------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALL 94 (755)
Q Consensus 22 ~~~~~qA~~~L~~fq~s~~-------aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll 94 (755)
.+.|..|-+.|+.+.+--+ --.+...++... ...||--|..||..-+. --..+|..+..-.-+.|+
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds------~a~Vra~Al~Tlt~~L~-~Vr~~~~~daniF~eYlf 509 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDS------EADVRATALETLTELLA-LVRDIPPSDANIFPEYLF 509 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCc------hHHHHHHHHHHHHHHHh-hccCCCcccchhhHhhhh
Confidence 4467788888888876311 134666666544 46899999999976554 334577777777888898
Q ss_pred HHHHHhcC--CChHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhccc--CCCchhHHHHHHHhhhhhhcccccccccCC
Q 004414 95 VAAKRFSS--GPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQ--SQDNGNMAVLEMLTVLPEEVIDSQASDCNI 170 (755)
Q Consensus 95 ~~l~~~~~--~~~~v~~kL~~~la~l~~~~~~W~~~i~~li~~~~~~~--~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~ 170 (755)
-.|.++.. .+..||--.+..||.+|..... +..+-..+...+ .+++.. ..||+ .
T Consensus 510 P~L~~l~~d~~~~~vRiayAsnla~LA~tA~r----Fle~~q~~~~~g~~n~~nse--------t~~~~----------~ 567 (1431)
T KOG1240|consen 510 PHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR----FLELTQELRQAGMLNDPNSE--------TAPEQ----------N 567 (1431)
T ss_pred hhhHhhhccCccceehhhHHhhHHHHHHHHHH----HHHHHHHHHhcccccCcccc--------ccccc----------c
Confidence 88887654 3456777788888888765331 111111111100 001000 11111 1
Q ss_pred CHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHH-hccccccCcchhcccchHHHHHhh
Q 004414 171 SSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVR-AGCFTEISQGSLAAHPLLNFVFNS 249 (755)
Q Consensus 171 ~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~-~~~~~~~~~~~~~~~~ll~~~~~~ 249 (755)
.+..++++++.+ ..++. ..+.. +.+.++.+.++.+.--.. ||. .-.++-++..+..+
T Consensus 568 ~~~~~~~L~~~V----~~~v~---sLlsd--------~~~~Vkr~Lle~i~~LC~FFGk-------~ksND~iLshLiTf 625 (1431)
T KOG1240|consen 568 YNTELQALHHTV----EQMVS---SLLSD--------SPPIVKRALLESIIPLCVFFGK-------EKSNDVILSHLITF 625 (1431)
T ss_pred cchHHHHHHHHH----HHHHH---HHHcC--------CchHHHHHHHHHHHHHHHHhhh-------cccccchHHHHHHH
Confidence 223333333322 22222 22222 123466666665443222 221 22356788889999
Q ss_pred cCCC--CcHHHHHHHHHHHhh--cCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChh
Q 004414 250 LQVQ--SSFDVAIEVLVELVG--RHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPE 325 (755)
Q Consensus 250 L~~~--~~~~~a~~~l~eii~--~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~ 325 (755)
|++. .+|.+-.|.++-+-- ..+..-+.|+|.+. +++.+.++-++.....-+..+.+.. .+. -..
T Consensus 626 LNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~--------Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~--K~~ 693 (1431)
T KOG1240|consen 626 LNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQ--------QGLTDGEEAVIVSALGSLSILIKLG--LLR--KPA 693 (1431)
T ss_pred hcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHH--------HhccCcchhhHHHHHHHHHHHHHhc--ccc--hHH
Confidence 9875 456555555542210 11223344554432 2555555544443333333332221 000 124
Q ss_pred HHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHH
Q 004414 326 ALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALL 387 (755)
Q Consensus 326 ~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll 387 (755)
+.++++..+-+..|| +.=|...++.|.+...+.+...+. .-...+..+|++++.+
T Consensus 694 v~~i~~~v~PlL~hP--N~WIR~~~~~iI~~~~~~ls~adv-----yc~l~P~irpfl~~~v 748 (1431)
T KOG1240|consen 694 VKDILQDVLPLLCHP--NLWIRRAVLGIIAAIARQLSAADV-----YCKLMPLIRPFLERPV 748 (1431)
T ss_pred HHHHHHhhhhheeCc--hHHHHHHHHHHHHHHHhhhhhhhh-----eEEeehhhHHhhhccH
Confidence 568888899999999 455888888888777665522221 1134455667766555
No 87
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=54.55 E-value=3.2e+02 Score=31.12 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhccc-CchHHHHHHHHHHHHHHh
Q 004414 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE-AVSSNACASALRKICEDA 558 (755)
Q Consensus 480 l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~-p~v~~~Aa~al~~l~~~c 558 (755)
+++|++++.++.+..... .+..+| +..+-+|++|+.-.--|...++..++..+.. |+.+..+-..+..+.+--
T Consensus 190 F~qIF~lc~qiLE~~~~~-----SLi~AT-Lesllrfl~wiPl~yIfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L~ 263 (1053)
T COG5101 190 FPQIFGLCKQILEYSRDE-----SLIEAT-LESLLRFLEWIPLDYIFETNIIELVLEHFNSMPDTRVATLSCLTEIVDLG 263 (1053)
T ss_pred HHHHHHHHHHHHHhcCCh-----HHHHHH-HHHHHHHHhhCchhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhhc
Confidence 478898888876544322 245566 4999999999876666788899998877664 777777777777777655
Q ss_pred h
Q 004414 559 S 559 (755)
Q Consensus 559 ~ 559 (755)
+
T Consensus 264 ~ 264 (1053)
T COG5101 264 R 264 (1053)
T ss_pred c
Confidence 4
No 88
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=50.49 E-value=4.3e+02 Score=30.08 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCcc--chHHHHHHHHHhccc--CchHHHHHHHHHHHH
Q 004414 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT--NARPLLLFLAAGISE--AVSSNACASALRKIC 555 (755)
Q Consensus 480 l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~--~l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~ 555 (755)
++.|.+-+..+.+++++ .+|..++ .+.|..+.-++...+ .+..+=+.+...+.. |++-..--.|+..+.
T Consensus 602 l~~ivStiL~~L~~k~p------~vR~~aa-dl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~ 674 (975)
T COG5181 602 LSMIVSTILKLLRSKPP------DVRIRAA-DLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIY 674 (975)
T ss_pred hHHHHHHHHHHhcCCCc------cHHHHHH-HHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 56677666566666654 2666664 999999988886544 344444455566653 776555555555555
Q ss_pred HHhhc-ccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhc---cCC
Q 004414 556 EDASA-LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID---GDN 631 (755)
Q Consensus 556 ~~c~~-~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~---~~~ 631 (755)
...+- .+ .|+.-++|-.+...+.+. ..+....-+.-+|.|....|.--- ..--.+++=.+++-|...-. ...
T Consensus 675 sv~~~~~m-qpPi~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~~peyi~-~rEWMRIcfeLvd~Lks~nKeiRR~A 750 (975)
T COG5181 675 SVHRFRSM-QPPISGILPSLTPILRNK--HQKVVANTIALVGTICMNSPEYIG-VREWMRICFELVDSLKSWNKEIRRNA 750 (975)
T ss_pred hhhccccc-CCchhhccccccHhhhhh--hHHHhhhHHHHHHHHHhcCcccCC-HHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 44321 12 133322222222222111 122234444455555544443211 11123444444444433211 100
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHH-H--HHHHHHHHHHHhhhc-cchHHHHHHH
Q 004414 632 NHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALL-R--VFWPMLEKLFRSEHM-ENGNLSTAAC 707 (755)
Q Consensus 632 ~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~-~--~~~~~l~~i~~~~~~-~~~~v~e~~~ 707 (755)
. +... .+..++.-.+.|..+..+++....-..-.......++ + -...++-.++.. |. .+..|-.-+.
T Consensus 751 ~-----~tfG---~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~d-Y~TPe~nVQnGvL 821 (975)
T COG5181 751 T-----ETFG---CISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSD-YETPEANVQNGVL 821 (975)
T ss_pred h-----hhhh---hHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhc-ccCchhHHHHhHH
Confidence 0 0000 0111121222233333333321100000000011111 1 122344455543 32 2345556677
Q ss_pred HHHHHHHHHHhhhhHhhHHHHHHHHHHHHh
Q 004414 708 RALSLAIQSSGQHFVTLLPQVLDCLSTNFV 737 (755)
Q Consensus 708 ~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~ 737 (755)
+++.++|.-.|+....|+=.+.+.+..+..
T Consensus 822 kam~fmFeyig~~s~dYvy~itPlleDAlt 851 (975)
T COG5181 822 KAMCFMFEYIGQASLDYVYSITPLLEDALT 851 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 788888888899888888777777766543
No 89
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=50.21 E-value=1.4e+02 Score=28.40 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=52.2
Q ss_pred CchHHHHHHHHHHHHHHhhcccCC------C--ch-------HHHHHHHHHHHHh---cCCChhhHHHHHHHHHHHHccC
Q 004414 541 AVSSNACASALRKICEDASALIDE------P--SN-------LEILMWIGEALEK---RHLPLEDEEEVVGAISLILGSV 602 (755)
Q Consensus 541 p~v~~~Aa~al~~l~~~c~~~l~~------~--~~-------~~~l~~~~~~l~~---~~l~~~~~~~l~eai~~vi~~~ 602 (755)
++++..|+.++..+-+.++..+.. + .| -..+.+++..+.. ..-+......++++++.++++-
T Consensus 54 ~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t 133 (182)
T PF13251_consen 54 PKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT 133 (182)
T ss_pred hhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC
Confidence 448888888888877665432210 0 01 1235556655431 2223445778999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcc
Q 004414 603 SNKELKNNLLARLLSSSYEAIGKLIDG 629 (755)
Q Consensus 603 p~~~~~~~~l~~l~~p~~~~l~~~~~~ 629 (755)
|.++... .++.+++..+...+..
T Consensus 134 PY~rL~~----~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 134 PYHRLPP----GLLTEVVTQVRPLLRH 156 (182)
T ss_pred ChhhcCH----hHHHHHHHHHHHHHhc
Confidence 9987533 4555666666666554
No 90
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=47.62 E-value=1.7e+02 Score=34.74 Aligned_cols=94 Identities=20% Similarity=0.193 Sum_probs=56.7
Q ss_pred hCccchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccCCCchHH--HH------HHHHHHHHh--cCCChhhHHHH
Q 004414 522 AFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLE--IL------MWIGEALEK--RHLPLEDEEEV 591 (755)
Q Consensus 522 ~~p~~l~~~l~~l~~~l~~p~v~~~Aa~al~~l~~~c~~~l~~~~~~~--~l------~~~~~~l~~--~~l~~~~~~~l 591 (755)
.||+..+-+.. ++..+.+|++..+|+++|.-+..||...+.--.+.. ++ -++...+.. ...+...+...
T Consensus 809 ~~~~s~~ia~k-lld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~y 887 (1030)
T KOG1967|consen 809 NHPESSEIAEK-LLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNY 887 (1030)
T ss_pred CCcccchHHHH-HHHhcCCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHH
Confidence 36665544443 456677899999999999999988764331101111 11 122222221 12355668889
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHH
Q 004414 592 VGAISLILGSVSNKELKNNLLARLLS 617 (755)
Q Consensus 592 ~eai~~vi~~~p~~~~~~~~l~~l~~ 617 (755)
.+++++|+..+|.+.. .+-+..+++
T Consensus 888 l~~LshVl~~vP~~vl-lp~~~~LlP 912 (1030)
T KOG1967|consen 888 LEALSHVLTNVPKQVL-LPQFPMLLP 912 (1030)
T ss_pred HHHHHHHHhcCCHHhh-ccchhhHHH
Confidence 9999999999998643 444544443
No 91
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=47.40 E-value=99 Score=26.21 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCC--CCcHHHHHHHHHHHhhcCCChhHHHHH-hhhhhHH
Q 004414 210 HDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKE 286 (755)
Q Consensus 210 ~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~eii~~~~~~~~~l~~-~~~~l~~ 286 (755)
..++..++.|+.+-..... -....+.....++.+.+.|.+ ++++..|+.++..+..........+.. +++.
T Consensus 21 ~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~--- 94 (120)
T cd00020 21 ENVQREAAWALSNLSAGNN---DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVP--- 94 (120)
T ss_pred HHHHHHHHHHHHHHhcCCH---HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChH---
Confidence 4688888888887654210 001123455788888888875 467888999999988765433332222 1221
Q ss_pred HhhhhhhcCCCHHHHhHHHHHHHHHH
Q 004414 287 LLLLPALTDGDEKVIGGLACLMSEIG 312 (755)
Q Consensus 287 ~~~~~~~~~~d~e~~~~l~~l~~~l~ 312 (755)
.+. ..+.++|.+..+..+.++..++
T Consensus 95 ~l~-~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 95 KLV-NLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHH-HHHhcCCHHHHHHHHHHHHHhh
Confidence 111 2344556666666666666554
No 92
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=43.11 E-value=5.3e+02 Score=29.00 Aligned_cols=167 Identities=13% Similarity=0.054 Sum_probs=95.2
Q ss_pred HHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCch
Q 004414 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRS 495 (755)
Q Consensus 416 ~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~ 495 (755)
-|...-+++..++.--....++..+...+.. ..+-.-.+.++..++.+++..... ....+..+..+.....
T Consensus 320 Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~----~~d~~~~~~~i~~I~~la~~~~~~-----~~~~v~~l~~ll~~~~ 390 (526)
T PF01602_consen 320 IRKKALDLLYKLANESNVKEILDELLKYLSE----LSDPDFRRELIKAIGDLAEKFPPD-----AEWYVDTLLKLLEISG 390 (526)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----C--HHHHHHHHHHHHHHHHHHGSS-----HHHHHHHHHHHHHCTG
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHHh----ccchhhhhhHHHHHHHHHhccCch-----HHHHHHHHHHhhhhcc
Confidence 3555556666554432223345555554422 123446788889999888877532 2445554444333222
Q ss_pred hhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhccc---CchHHHHHHHHHHHHHHhhcccCCCchHHHHH
Q 004414 496 EELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE---AVSSNACASALRKICEDASALIDEPSNLEILM 572 (755)
Q Consensus 496 ~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~---p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~ 572 (755)
.. +. ..++......+..+|+.-..++..++..+.+ |++...+++.+..+++.+.. .. ...+.+.
T Consensus 391 ~~------~~----~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~ 457 (526)
T PF01602_consen 391 DY------VS----NEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN--TE-SAPDILR 457 (526)
T ss_dssp GG------CH----CHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHHHH
T ss_pred cc------cc----chHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc--cc-cHHHHHH
Confidence 11 11 1344444455566777666677777766554 56778888888888888776 11 1233344
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHccCCchH
Q 004414 573 WIGEALEKRHLPLEDEEEVVGAISLILGSVSNKE 606 (755)
Q Consensus 573 ~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~ 606 (755)
.+...+.. -+.+.+..++.++..+....|..+
T Consensus 458 ~l~~~~~~--~~~~vk~~ilt~~~Kl~~~~~~~~ 489 (526)
T PF01602_consen 458 SLIENFIE--ESPEVKLQILTALAKLFKRNPENE 489 (526)
T ss_dssp HHHHHHTT--SHHHHHHHHHHHHHHHHHHSCSTT
T ss_pred HHHHhhcc--ccHHHHHHHHHHHHHHHhhCCchh
Confidence 44444322 245679999999999998887653
No 93
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=42.60 E-value=4e+02 Score=27.52 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=62.0
Q ss_pred HHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcc--cCchHHHHHHHHHHHHHHhhcccCCCc-------hHHHHHHH
Q 004414 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGIS--EAVSSNACASALRKICEDASALIDEPS-------NLEILMWI 574 (755)
Q Consensus 504 v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~--~p~v~~~Aa~al~~l~~~c~~~l~~~~-------~~~~l~~~ 574 (755)
+|..++ .++|-|+=. +.+.-...+..+...+. ++.++..|..++..+...-+....... ....+.++
T Consensus 43 vR~~al-~cLGl~~Ll---d~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~ 118 (298)
T PF12719_consen 43 VRELAL-KCLGLCCLL---DKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKI 118 (298)
T ss_pred HHHHHH-HHHHHHHHh---ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHH
Confidence 777775 999988743 23433444444444442 455888888888887755443222111 11233443
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHcc--CCc-hHHHHHHHHHHHHH
Q 004414 575 GEALEKRHLPLEDEEEVVGAISLILGS--VSN-KELKNNLLARLLSS 618 (755)
Q Consensus 575 ~~~l~~~~l~~~~~~~l~eai~~vi~~--~p~-~~~~~~~l~~l~~p 618 (755)
........ +.+-+..++||++.++-. +.+ .+.....+-..++|
T Consensus 119 l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p 164 (298)
T PF12719_consen 119 LTKFLDSE-NPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNP 164 (298)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCc
Confidence 33322222 567899999999998743 555 44444444444444
No 94
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.52 E-value=7.9e+02 Score=30.26 Aligned_cols=228 Identities=18% Similarity=0.152 Sum_probs=111.2
Q ss_pred HHHHHhhHHHHhcCh-hHHHHHHHHHhcccCCCC-------CcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHH
Q 004414 310 EIGQAAPSLIVEASP-EALALADALLSCVAFPSE-------DWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFS 381 (755)
Q Consensus 310 ~l~e~~~~~l~~~~~-~~~~ll~~ll~~~~~p~~-------d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~ 381 (755)
+++..|..-..++.+ ..+.++++++.|+|..|. +-+.+++++.--..+-+. +..+.+..........|+.
T Consensus 96 ~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~--es~DYpl~~~g~~~k~fr~ 173 (1048)
T KOG2011|consen 96 ELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDER--ESGDYPLTSKGPEWKNFRE 173 (1048)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhh--hhccCcCCCCCHHHHHHHH
Confidence 344455444444433 346899999999998761 122233444322222220 0001000001123567888
Q ss_pred HHHHHHHHHHHHhccCCCCCCCC-------CC-CCCCchHHHHHHHHhH----HHHHHHHh---cCcHHHHHHHHHHhhc
Q 004414 382 VFSALLDALLLRAQVDESSFNDD-------GM-VDLPDGLVQFRMNLVE----LLVDICQL---LRSATFIQKVFFGSWG 446 (755)
Q Consensus 382 ~~~~Ll~~l~~k~~~p~~~~~~~-------~~-~d~~d~f~~~R~~~~d----~l~~~~~~---l~~~~~l~~~~~~~~~ 446 (755)
.+..+++.++.+++|..--+++. |- .-.....+.||+..-= ++...+.+ +... ....-.++..
T Consensus 174 ~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~--~~~tskQlea 251 (1048)
T KOG2011|consen 174 NFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSH--NDKTSKQLEA 251 (1048)
T ss_pred HHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 89999999999999854423210 10 0112345666754321 11111111 0000 0000000000
Q ss_pred CCCCCCChh-hhHHHHHHHHhhhhhccccCCccchHHHHHHHH----HhccCchhhhhhH-HHHHHhHHHHHHHhhHHHH
Q 004414 447 SANVPIPWK-EVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA----VLSASRSEELKGF-MHIVYRSLADVIGSYSKWI 520 (755)
Q Consensus 447 ~~~~~~~W~-~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~----~l~~~~~~~~~~~-~~v~~~t~~~~ig~y~~~~ 520 (755)
..+.+..=+ .+|..+.-..-..+.. +.|.+++. .+.=|-. +.+ +-+| +.||-..+.|+
T Consensus 252 Er~k~r~~rarle~Ll~~r~etqe~~---------d~i~~mi~~if~sVFVHRY---RDV~~~IR----aiCiqeLgiWi 315 (1048)
T KOG2011|consen 252 ERNKSRGNRARLESLLMLRKETQEQQ---------DEIESMINDIFDSVFVHRY---RDVDPDIR----AICIQELGIWI 315 (1048)
T ss_pred HhcccccchHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhheeeeec---ccCchHHH----HHHHHHHHHHH
Confidence 000111111 5666554444333332 23333333 2222211 000 1255 36888888999
Q ss_pred HhCccch--HHHHHHHHHhcccCc--hHHHHHHHHHHHHHH
Q 004414 521 SAFQTNA--RPLLLFLAAGISEAV--SSNACASALRKICED 557 (755)
Q Consensus 521 ~~~p~~l--~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~ 557 (755)
..-|+++ ..-|.|+--.|+|.. |+.++-+|+..|-+.
T Consensus 316 ~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 316 KSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 9999854 467888888898854 899999999988766
No 95
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=40.48 E-value=43 Score=22.67 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=19.8
Q ss_pred HHHHHHHhccc--CchHHHHHHHHHHHHH
Q 004414 530 LLLFLAAGISE--AVSSNACASALRKICE 556 (755)
Q Consensus 530 ~l~~l~~~l~~--p~v~~~Aa~al~~l~~ 556 (755)
+++.|++-+.+ ++++..|+.|+.++|.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 45556666654 4589999999999873
No 96
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=38.35 E-value=2.7e+02 Score=29.92 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhc--c---------chHHHHHHHHHHHHHH
Q 004414 646 LSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHM--E---------NGNLSTAACRALSLAI 714 (755)
Q Consensus 646 l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~--~---------~~~v~e~~~~~~~~~~ 714 (755)
++.....+..+.++|-++..-. -|.-.-+.+...+..+..++...-+ . -..+.-.+|..+....
T Consensus 50 l~~~~~~l~lilKiF~sL~~~D-----LPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~ 124 (370)
T PF08506_consen 50 LKVLFEMLKLILKIFYSLNCQD-----LPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYA 124 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS-------HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCc-----CcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 4455566666777877766421 1111223344555555555542101 0 1134446888898888
Q ss_pred HHHhhhhHhhHHHHHHHHHHHHhhcCCccce
Q 004414 715 QSSGQHFVTLLPQVLDCLSTNFVSFQNHECY 745 (755)
Q Consensus 715 ~~l~~~~~~~l~~~~~~l~~~f~~~~~~s~~ 745 (755)
...++.|.||+|.+++.+.+.......+..|
T Consensus 125 ~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~ 155 (370)
T PF08506_consen 125 EKYEEEFEPFLPTFVQAVWNLLTKISQQPKY 155 (370)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHTC--SSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999877664344444
No 97
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=36.69 E-value=1.3e+02 Score=30.25 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=55.1
Q ss_pred hhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHH
Q 004414 456 EVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLA 535 (755)
Q Consensus 456 ~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~ 535 (755)
+++.++|.++.++. + ..|..++.++..... ..|... ..++|+.- +|..++.....+.
T Consensus 172 ~Ry~amF~LRn~g~------E----eaI~al~~~l~~~Sa-------lfrhEv-AfVfGQl~-----s~~ai~~L~k~L~ 228 (289)
T KOG0567|consen 172 ERYRAMFYLRNIGT------E----EAINALIDGLADDSA-------LFRHEV-AFVFGQLQ-----SPAAIPSLIKVLL 228 (289)
T ss_pred HHHhhhhHhhccCc------H----HHHHHHHHhcccchH-------HHHHHH-HHHHhhcc-----chhhhHHHHHHHH
Confidence 45578888886632 1 345556666554322 234444 48888775 5666666666666
Q ss_pred HhcccCchHHHHHHHHHHHH-HHhhccc
Q 004414 536 AGISEAVSSNACASALRKIC-EDASALI 562 (755)
Q Consensus 536 ~~l~~p~v~~~Aa~al~~l~-~~c~~~l 562 (755)
..-.+|.|+.-|+.||..+. ++|...|
T Consensus 229 d~~E~pMVRhEaAeALGaIa~e~~~~vL 256 (289)
T KOG0567|consen 229 DETEHPMVRHEAAEALGAIADEDCVEVL 256 (289)
T ss_pred hhhcchHHHHHHHHHHHhhcCHHHHHHH
Confidence 66677889999999999988 4466544
No 98
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=36.25 E-value=5.3e+02 Score=27.04 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=85.7
Q ss_pred HHHHhhHHHHHhCccchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhc---ccCCCchHHHHHHHHHHHHhcCCChhh
Q 004414 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLED 587 (755)
Q Consensus 511 ~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~v~~~Aa~al~~l~~~c~~---~l~~~~~~~~l~~~~~~l~~~~l~~~~ 587 (755)
-++-||-+|+..+...+ ++--||.|+.+++..... ........+.|.++... ...+.
T Consensus 114 GvVpRfvefm~~~q~~m---------------lqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s-----~~~~V 173 (526)
T COG5064 114 GVVPRFVEFMDEIQRDM---------------LQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS-----TEDDV 173 (526)
T ss_pred cccHHHHHHHHhcchhH---------------HHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC-----chHHH
Confidence 56666666664332211 233789999999866442 22233456666666532 13466
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHH--HHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccc
Q 004414 588 EEEVVGAISLILGSVSNKELKNNLLA--RLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPV 665 (755)
Q Consensus 588 ~~~l~eai~~vi~~~p~~~~~~~~l~--~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~ 665 (755)
++..+=++|.+..-.+.-+ +++- ..+.|++.-+.. .. +.. ..+..+-.. |+.+.|+-++
T Consensus 174 ~eQavWALGNiAGDS~~~R---D~vL~~galeplL~ll~s---s~--------~~i--smlRn~TWt---LSNlcRGknP 234 (526)
T COG5064 174 REQAVWALGNIAGDSEGCR---DYVLQCGALEPLLGLLLS---SA--------IHI--SMLRNATWT---LSNLCRGKNP 234 (526)
T ss_pred HHHHHHHhccccCCchhHH---HHHHhcCchHHHHHHHHh---cc--------chH--HHHHHhHHH---HHHhhCCCCC
Confidence 8889999999987655443 2221 245555555442 11 000 001111111 3344444333
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 004414 666 PLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQ 715 (755)
Q Consensus 666 ~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~ 715 (755)
.|--..+.+..|++..+. |..|++++-.+|=++..+..
T Consensus 235 ---------~P~w~~isqalpiL~KLi---ys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 235 ---------PPDWSNISQALPILAKLI---YSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred ---------CCchHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHhcc
Confidence 333456678888888776 44688888888887776655
No 99
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=35.68 E-value=2.6e+02 Score=23.23 Aligned_cols=70 Identities=10% Similarity=0.040 Sum_probs=46.8
Q ss_pred HHHHHHhcccCc--hHHHHHHHHHHHHHHhh-cccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCch
Q 004414 531 LLFLAAGISEAV--SSNACASALRKICEDAS-ALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNK 605 (755)
Q Consensus 531 l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~-~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~ 605 (755)
++-.+..+.+|. ++.++-..++++.+... .. ...+.+..+....... -+.-..+..+.|++.++...|.+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~----~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPV----IDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcch----hhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChHH
Confidence 444556667765 78888999999998877 22 2455555554432221 14456889999999999887765
No 100
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=35.34 E-value=1.3e+03 Score=31.21 Aligned_cols=281 Identities=15% Similarity=0.152 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHHhc-ChHHHH---------HHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHHH-
Q 004414 22 SCNRVAANQWLVQFQQ-TDAAWE---------IATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALL- 90 (755)
Q Consensus 22 ~~~~~qA~~~L~~fq~-s~~aw~---------~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr- 90 (755)
.+.+.+|=.-|..+-. +++.|+ ....+|.+.+ .++|-.|+.+|++-... +++++..+-
T Consensus 418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s------~~iQ~~A~~~L~nLa~~-----ndenr~aIie 486 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS------EQQQEYAVALLAILTDE-----VDESKWAITA 486 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC------HHHHHHHHHHHHHHHcC-----CHHHHHHHHH
Confidence 4556665555555553 355444 5566676543 58888898888765432 334443332
Q ss_pred HHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccc
Q 004414 91 NALLVAAKRF-SSGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDS 163 (755)
Q Consensus 91 ~~Ll~~l~~~-~~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~ 163 (755)
...+..|.+. ..+...++..-+-+|+.+.....+ -.+.++-++..+.++ +.......+..|..+...
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~---- 560 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRT---- 560 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhc----
Confidence 2333333322 235567888888888888753211 123344444444432 122222223322222111
Q ss_pred cccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchH
Q 004414 164 QASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 (755)
Q Consensus 164 ~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll 243 (755)
.-+.++.-+...+.+ +++.....+++.+.+-+..+....+-........-+
T Consensus 561 ---------------------~d~~~I~~Lv~LLls--------dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL 611 (2102)
T PLN03200 561 ---------------------ADAATISQLTALLLG--------DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL 611 (2102)
T ss_pred ---------------------cchhHHHHHHHHhcC--------CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence 011111222233333 223466667777766655331000000001123456
Q ss_pred HHHHhhcCCC--CcHHHHHHHHHHHhhcCCChhHHHHH-hhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHH----hh
Q 004414 244 NFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA----AP 316 (755)
Q Consensus 244 ~~~~~~L~~~--~~~~~a~~~l~eii~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~----~~ 316 (755)
+.+.+.|.++ +.++.|+.++..+.....+..+.++. +.+ .+.+ .-+...+.+..+..+..+..+... ..
T Consensus 612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaI--pPLV--~LLss~~~~v~keAA~AL~nL~~~~~~~q~ 687 (2102)
T PLN03200 612 RTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEII--NPCI--KLLTNNTEAVATQSARALAALSRSIKENRK 687 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCH--HHHH--HHHhcCChHHHHHHHHHHHHHHhCCCHHHH
Confidence 6777777654 56888999998888866665444331 111 1111 123345555555555555544421 11
Q ss_pred HHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHH
Q 004414 317 SLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (755)
Q Consensus 317 ~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~ 359 (755)
..+.+ .+.+..|+.+...+ |.++.+.++.-...+..
T Consensus 688 ~~~v~-----~GaV~pL~~LL~~~--d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 688 VSYAA-----EDAIKPLIKLAKSS--SIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHHH-----cCCHHHHHHHHhCC--ChHHHHHHHHHHHHHHc
Confidence 11121 12445555555564 56788877776666554
No 101
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=34.89 E-value=2.3e+02 Score=34.32 Aligned_cols=138 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhhccccCCccchHHHHHHH------------------------HHhccCch----hhhhhHHHHHHhH
Q 004414 457 VETKLFALNVVSEVVLQEGQAFDFSVIMQLV------------------------AVLSASRS----EELKGFMHIVYRS 508 (755)
Q Consensus 457 ~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll------------------------~~l~~~~~----~~~~~~~~v~~~t 508 (755)
++|+.|...+++..-.+.+-..-+..+...+ +..++.|+ .....+.+|...+
T Consensus 445 RDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rs 524 (1133)
T KOG1943|consen 445 RDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRS 524 (1133)
T ss_pred HHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhh
Q ss_pred HHHHHHhhHHHHHhCccchHHHHHHHHHh-ccc--CchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCCh
Q 004414 509 LADVIGSYSKWISAFQTNARPLLLFLAAG-ISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPL 585 (755)
Q Consensus 509 ~~~~ig~y~~~~~~~p~~l~~~l~~l~~~-l~~--p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~ 585 (755)
.+-+..+..++..|.|..++++=++.. +.| +.++..||+|+.++...-.+.+.+ ++++.++.....- +.
T Consensus 525 --Ncy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~-~~L~~lld~~ls~-----~~ 596 (1133)
T KOG1943|consen 525 --NCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD-YVLPPLLDSTLSK-----DA 596 (1133)
T ss_pred --hHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc-cchhhhhhhhcCC-----Ch
Q ss_pred hhHHHHHHHHHHHHccC
Q 004414 586 EDEEEVVGAISLILGSV 602 (755)
Q Consensus 586 ~~~~~l~eai~~vi~~~ 602 (755)
..|.-.+-+.|.++.+.
T Consensus 597 ~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 597 SMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred HHhhhhHHHHHHHHHHh
No 102
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.76 E-value=8.3e+02 Score=28.83 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=79.0
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHh-cChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHH
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQ-QTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq-~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~ 87 (755)
...+++.|++++.+..|-.|...|++.- +.|.+...|.-=|.+--+ ..+-.+--+|..||-.. -.++...
T Consensus 283 avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lIt--d~NrsIat~AITtLLKT-------G~e~sv~ 353 (865)
T KOG1078|consen 283 AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLIT--DSNRSIATLAITTLLKT-------GTESSVD 353 (865)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhc--ccccchhHHHHHHHHHh-------cchhHHH
Confidence 3455556666677777778888887653 457776665443333221 12334556666666442 3556666
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhccc
Q 004414 88 ALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (755)
Q Consensus 88 ~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~ 162 (755)
.|.+.+-......+.+-+.|. ..++-++...++ .|...+..+...+... |.-.......+.+..+.||.-+
T Consensus 354 rLm~qI~~fv~disDeFKivv---vdai~sLc~~fp~k~~~~m~FL~~~Lr~e-Gg~e~K~aivd~Ii~iie~~pd 425 (865)
T KOG1078|consen 354 RLMKQISSFVSDISDEFKIVV---VDAIRSLCLKFPRKHTVMMNFLSNMLREE-GGFEFKRAIVDAIIDIIEENPD 425 (865)
T ss_pred HHHHHHHHHHHhccccceEEe---HHHHHHHHhhccHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHhCcc
Confidence 666666655555444445442 223333445555 5766666666666542 2344556667777777777643
No 103
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.65 E-value=7.2e+02 Score=28.11 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhccCCChHH-HHHHHHHHHHHhcChHHHH-------H-HHHh-hcCCCC--------C----C-Ccchh
Q 004414 5 LQIKVAQAVHVLNHDTESCN-RVAANQWLVQFQQTDAAWE-------I-ATSI-LTSDRQ--------S----F-LTDFE 61 (755)
Q Consensus 5 ~~~~v~~av~~ly~~~d~~~-~~qA~~~L~~fq~s~~aw~-------~-~~~L-L~~~~~--------~----~-~~~~~ 61 (755)
..-++++.|..+..++|... |+-.++...+|-.++++-. . +..+ |...+. | + .++..
T Consensus 20 aalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~ 99 (675)
T KOG0212|consen 20 AALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQ 99 (675)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccce
Confidence 34568888988877666544 4446667778888877621 1 1111 111110 0 1 35778
Q ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHHHHHhc---ccCchHHH
Q 004414 62 VEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGP-------PQLLTQICLALSALILRAV---EHGKPIEK 131 (755)
Q Consensus 62 v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~-------~~v~~kL~~~la~l~~~~~---~W~~~i~~ 131 (755)
+||||+-.|++-.+- -........+.+++.+.+...++ .-...+|...++ .... +-+.+++-
T Consensus 100 vRyyACEsLYNiaKv-----~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIV---te~~~tFsL~~~ipL 171 (675)
T KOG0212|consen 100 VRYYACESLYNIAKV-----AKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIV---TESASTFSLPEFIPL 171 (675)
T ss_pred eeeHhHHHHHHHHHH-----hccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhc---cccccccCHHHHHHH
Confidence 999999999885542 11222333455555555433222 223333332221 1111 22344454
Q ss_pred HHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhh
Q 004414 132 LFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHD 211 (755)
Q Consensus 132 li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~ 211 (755)
+-+.+... ++....+++..+..|--- ++ -++..+.+.+++-|.+.+..+ +.+
T Consensus 172 L~eriy~~--n~~tR~flv~Wl~~Lds~-----------P~-------~~m~~yl~~~ldGLf~~LsD~--------s~e 223 (675)
T KOG0212|consen 172 LRERIYVI--NPMTRQFLVSWLYVLDSV-----------PD-------LEMISYLPSLLDGLFNMLSDS--------SDE 223 (675)
T ss_pred HHHHHhcC--CchHHHHHHHHHHHHhcC-----------Cc-------HHHHhcchHHHHHHHHHhcCC--------cHH
Confidence 44555443 345566777777654321 11 124566777787777777653 345
Q ss_pred hHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCC--CCcHHHHHHHHHHHhhcCC
Q 004414 212 RNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHE 271 (755)
Q Consensus 212 l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~eii~~~~ 271 (755)
++..+=.|+.+++.-.. .-|. .+.....++.+...+++ +++...|+..+.|++.-+.
T Consensus 224 Vr~~~~t~l~~fL~eI~--s~P~-s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 224 VRTLTDTLLSEFLAEIR--SSPS-SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred HHHHHHHHHHHHHHHHh--cCcc-ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC
Confidence 55444444455544211 1122 22345566777766765 4567788999999988654
No 104
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=33.27 E-value=1.7e+02 Score=28.58 Aligned_cols=62 Identities=13% Similarity=0.275 Sum_probs=48.6
Q ss_pred hccCCChHHHHHHHHHHHHHhcC--hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHH
Q 004414 16 LNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (755)
Q Consensus 16 ly~~~d~~~~~qA~~~L~~fq~s--~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~ 87 (755)
++|-+.|..|+-|-.++...+.. ++-|.++..|.+++- -+.|++|...|..+.. .++++...
T Consensus 20 f~Gv~~P~~R~lak~~~~~~~~~~~~~~~~l~~~Lw~~~~------~E~r~~al~~l~~~~~----~~~~~~~~ 83 (208)
T cd07064 20 FYGIKTPERRALSKPFLKESKLPDKEELWELVLELWQQPE------REYQYVAIDLLRKYKK----FLTPEDLP 83 (208)
T ss_pred cCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchH------HHHHHHHHHHHHHHHh----cCCHHHHH
Confidence 67778999999999999988775 678899999997653 4899999998877544 25555543
No 105
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=32.90 E-value=3.6e+02 Score=24.51 Aligned_cols=45 Identities=9% Similarity=0.060 Sum_probs=30.8
Q ss_pred HHHHhCccchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhccc
Q 004414 518 KWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALI 562 (755)
Q Consensus 518 ~~~~~~p~~l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~l 562 (755)
+.+...+.--..++..|-+.+.+ |.++..|-..+..+.+.|+..+
T Consensus 26 D~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~f 72 (144)
T cd03568 26 DKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRF 72 (144)
T ss_pred HHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 33333444445566677777765 5688888888888889998765
No 106
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=32.75 E-value=1.1e+02 Score=28.31 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhhc
Q 004414 703 STAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSF 739 (755)
Q Consensus 703 ~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~~~ 739 (755)
...+..++-.++.++|..+.||+|.+++.++...+..
T Consensus 104 h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~ 140 (160)
T PF11865_consen 104 HTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTC 140 (160)
T ss_pred HHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhC
Confidence 3456666677788899999999999999999988763
No 107
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=30.43 E-value=2.1e+02 Score=26.11 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=34.2
Q ss_pred HhCccchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccCC
Q 004414 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDE 564 (755)
Q Consensus 521 ~~~p~~l~~~l~~l~~~l~~p~v~~~Aa~al~~l~~~c~~~l~~ 564 (755)
.+....|.++|.|+.+.+.+|+...-...+...+.+-+...++.
T Consensus 70 ~Rde~~L~piL~Fl~k~i~~pr~~~~l~~v~~~ildiY~~~~~~ 113 (148)
T PF09384_consen 70 GRDEESLEPILKFLIKNITDPRYTRILVDVANIILDIYSPVIGQ 113 (148)
T ss_pred hCCHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 34667899999999999999997777777777777766666643
No 108
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=30.29 E-value=3.8e+02 Score=29.29 Aligned_cols=126 Identities=13% Similarity=0.236 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCCC---cHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHh
Q 004414 212 RNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQS---SFDVAIEVLVELVGRHEGLPQALLCRVPFLKELL 288 (755)
Q Consensus 212 l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~---~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~ 288 (755)
-...+|+.+++-++ | + ..|.......-+..+++.....+. -+..-..|+...+.+...+...++.+++..=+
T Consensus 191 gI~elLeil~sii~-g-f-~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP-- 265 (409)
T PF01603_consen 191 GIAELLEILGSIIN-G-F-AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWP-- 265 (409)
T ss_dssp THHHHHHHHHHHHT-T----SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS---
T ss_pred CHHHHHHHHHHHHh-c-c-CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCC--
Confidence 45677888888777 2 1 223322122223344444444443 35677888888888877776666666654222
Q ss_pred hhhhhcCCCHH----HHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHH
Q 004414 289 LLPALTDGDEK----VIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWST 356 (755)
Q Consensus 289 ~~~~~~~~d~e----~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~ 356 (755)
..+.. +...+..++..+...-.. .....++..+-.|.+-+ ...|++.++.||..
T Consensus 266 ------~t~s~Kev~FL~el~~il~~~~~~~f~------~i~~~lf~~la~ci~S~--h~qVAErAl~~w~n 323 (409)
T PF01603_consen 266 ------KTNSQKEVLFLNELEEILEVLPPEEFQ------KIMVPLFKRLAKCISSP--HFQVAERALYFWNN 323 (409)
T ss_dssp ------SS-HHHHHHHHHHHHHHHTT--HHHHH------HHHHHHHHHHHHHHTSS--SHHHHHHHHGGGGS
T ss_pred ------CCCchhHHHHHHHHHHHHHhcCHHHHH------HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHCC
Confidence 11111 111111111111100000 11246778888888776 68999999999963
No 109
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=27.28 E-value=8.3e+02 Score=27.73 Aligned_cols=54 Identities=6% Similarity=0.144 Sum_probs=34.3
Q ss_pred HHHhHHHHHHHhhHHHHHhCccch-HHHHHHHHHhcccCc--hHHHHHHHHHHHH--HHhhc
Q 004414 504 IVYRSLADVIGSYSKWISAFQTNA-RPLLLFLAAGISEAV--SSNACASALRKIC--EDASA 560 (755)
Q Consensus 504 v~~~t~~~~ig~y~~~~~~~p~~l-~~~l~~l~~~l~~p~--v~~~Aa~al~~l~--~~c~~ 560 (755)
+|..++ .++++|+ +..+..++ ..+-+.+-+++.|.+ |+.+|+-+++.+- ++|-+
T Consensus 503 vRsaAv-~aLskf~--ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~p 561 (898)
T COG5240 503 VRSAAV-QALSKFA--LNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEP 561 (898)
T ss_pred HHHHHH-HHHHHhc--cCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhc
Confidence 555543 6776665 22233344 456666678888754 9999999987764 45655
No 110
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.43 E-value=3.2e+02 Score=32.77 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=38.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhH
Q 004414 672 AGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFV 722 (755)
Q Consensus 672 ~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~ 722 (755)
..++-.++.+.+.||-+...+.. +++-+++.+|.++..+..-.|.-+.
T Consensus 836 ~~~n~LlPlvhq~W~~vie~~~~---k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 836 TYHNLLLPLVHQTWPSVIECLLC---KDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred ccchhHhHHHHhhhhHHHHHHhc---CchHHHHHHHHHHHHHHHHhhhHHH
Confidence 34566889999999988877763 6899999999999988887776433
No 111
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=26.34 E-value=81 Score=22.11 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 004414 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQ 34 (755)
Q Consensus 3 ~~~~~~v~~av~~ly~~~d~~~~~qA~~~L~~ 34 (755)
|++-+.-.+.++.+...+|+.++.+|.+.|.+
T Consensus 12 ~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 12 MGDLEGARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34444445555554456677788888887765
No 112
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=25.87 E-value=4.3e+02 Score=22.68 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhh-hhHhhHHHHHHHHHHHH
Q 004414 686 PMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ-HFVTLLPQVLDCLSTNF 736 (755)
Q Consensus 686 ~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~-~~~~~l~~~~~~l~~~f 736 (755)
|-+...++. --..+++.+.+++++..+++.+.+ +..|++.+++-.+...+
T Consensus 55 pQI~acL~s-aL~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 55 PQIMACLQS-ALEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHHHHH-HhCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 444444442 234688999999999999999987 56677777766666544
No 113
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=25.81 E-value=5.9e+02 Score=24.27 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=47.8
Q ss_pred CcchhcccchHHHHHhhcCCC--CcHHHHHHHHHHHhhc-CCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHH
Q 004414 233 SQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGR-HEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (755)
Q Consensus 233 ~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~ 309 (755)
+++.+..+++++.+|+.|..- ..+-.|...+.+++.. ..+-+-.+++++. ..+. .|++..|.++.....+++.
T Consensus 30 ~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI---~plk-~AL~tr~~~V~~~~L~~Lq 105 (183)
T PF10274_consen 30 DPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLI---IPLK-RALNTRDPEVFCATLKALQ 105 (183)
T ss_pred ChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHH---HHHH-HHHhCCCHHHHHHHHHHHH
Confidence 556677789999999999752 3455788888888887 3322223333333 2332 4777788887766666555
Q ss_pred HH
Q 004414 310 EI 311 (755)
Q Consensus 310 ~l 311 (755)
.+
T Consensus 106 ~L 107 (183)
T PF10274_consen 106 QL 107 (183)
T ss_pred HH
Confidence 54
No 114
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=24.93 E-value=6.5e+02 Score=25.80 Aligned_cols=72 Identities=14% Similarity=0.197 Sum_probs=44.6
Q ss_pred hchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcch---hcccchHHHHHhhc----C-----
Q 004414 184 SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS---LAAHPLLNFVFNSL----Q----- 251 (755)
Q Consensus 184 ~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~---~~~~~ll~~~~~~L----~----- 251 (755)
++.+-++-.+...+.+. ++..+...++|+...+. .++... +.++.+.+++.+++ .
T Consensus 115 ~~~~liiP~iL~llDD~--------~~~~K~~G~~lL~~ll~-----~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~ 181 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDY--------SPEIKIQGCQLLHHLLE-----KVPAAEWDILRRTGLFSVFEDALFPCLYYLPPI 181 (282)
T ss_pred HhhhHHHhhHHHHhcCC--------CHHHHHHHHHHHHHHHH-----hCChhhhHHHHHcChHHHHHHHHHHHhhcCCCC
Confidence 34555555555544442 35689999999999998 344444 55666655555444 3
Q ss_pred ---CC--CcHHHHHHHHHHHhh
Q 004414 252 ---VQ--SSFDVAIEVLVELVG 268 (755)
Q Consensus 252 ---~~--~~~~~a~~~l~eii~ 268 (755)
++ .+...|..|+..++.
T Consensus 182 tp~~~s~~Ll~~ay~~L~~L~~ 203 (282)
T PF10521_consen 182 TPEDESLELLQAAYPALLSLLK 203 (282)
T ss_pred CCchhhHHHHHHHHHHHHHHHH
Confidence 11 256778888888755
No 115
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.32 E-value=7e+02 Score=29.38 Aligned_cols=48 Identities=6% Similarity=0.147 Sum_probs=36.1
Q ss_pred HHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccCc--hHHHHHHHHHHHH
Q 004414 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKIC 555 (755)
Q Consensus 504 v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~ 555 (755)
+|..++ .++.+++ ...+...+++...+-+++.|++ ++.+|..++..+-
T Consensus 482 vRaaAv-~alaKfg---~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 482 VRAAAV-SALAKFG---AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hHHHHH-HHHHHHh---cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 454432 4555444 6678888999999999999875 8999988888776
No 116
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=23.97 E-value=3.1e+02 Score=29.28 Aligned_cols=51 Identities=6% Similarity=0.003 Sum_probs=37.8
Q ss_pred HHHhhHHHHHhCccchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhccc
Q 004414 512 VIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALI 562 (755)
Q Consensus 512 ~ig~y~~~~~~~p~~l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~l 562 (755)
+|-..|+-+...|+.-..++.+|.+.|.+ |.|.-.|-..+-.+...|++.+
T Consensus 28 ~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~ 80 (462)
T KOG2199|consen 28 LILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRF 80 (462)
T ss_pred HHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHH
Confidence 34445555556777777888888888875 6688888888888888888765
No 117
>PF08072 BDHCT: BDHCT (NUC031) domain; InterPro: IPR012532 This is a C-terminal domain in Bloom's syndrome DEAD helicase subfamily []. The helicase articipates in DNA replication and repair, exhibiting a magnesium-dependent ATP-dependent DNA-helicase activity that unwinds single- and double-stranded DNA in a 3'-5' direction.; GO: 0003677 DNA binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006260 DNA replication, 0005634 nucleus
Probab=21.88 E-value=95 Score=21.07 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHccCCchHH
Q 004414 589 EEVVGAISLILGSVSNKEL 607 (755)
Q Consensus 589 ~~l~eai~~vi~~~p~~~~ 607 (755)
..++|.|+.++.++|.++.
T Consensus 3 ~~VMe~IC~LVD~IP~~eL 21 (41)
T PF08072_consen 3 IHVMEHICKLVDTIPIDEL 21 (41)
T ss_pred HHHHHHHHHHHccCcHHHH
Confidence 5789999999999999874
No 118
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=21.51 E-value=1.4e+02 Score=33.78 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=37.1
Q ss_pred HHHHHhhHHHHHhCccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHH
Q 004414 510 ADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWI 574 (755)
Q Consensus 510 ~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~ 574 (755)
...|.+|..+ -|++-..+++.++.-.+|.+ ++..|-+.|-.||.+-...+ +...++|.++
T Consensus 43 aq~I~kffk~---FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v--~kvaDvL~Ql 104 (556)
T PF05918_consen 43 AQFIPKFFKH---FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV--SKVADVLVQL 104 (556)
T ss_dssp HHHHHHHHCC----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H--HHHHHHHHHH
T ss_pred HHHHHHHHhh---ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH--hHHHHHHHHH
Confidence 3788877644 48888888888888777654 78888888888887755443 2234444443
No 119
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=21.20 E-value=6.3e+02 Score=30.05 Aligned_cols=130 Identities=15% Similarity=0.044 Sum_probs=78.7
Q ss_pred HHHHHHHHhHHHHHHHHhcCcHHHHHHHHH-HhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhc
Q 004414 413 LVQFRMNLVELLVDICQLLRSATFIQKVFF-GSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS 491 (755)
Q Consensus 413 f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~-~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~ 491 (755)
-.+.|..++-.+...+...|.+........ .+... .+.+|..+-+.++++..+++.+..+-. -..++..+..+.
T Consensus 531 v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~--~q~~y~~R~t~l~si~~la~v~g~ei~---~~~Llp~~~~l~ 605 (759)
T KOG0211|consen 531 VYSIREAAARNLPALVETFGSEWARLEEIPKLLAMD--LQDNYLVRMTTLFSIHELAEVLGQEIT---CEDLLPVFLDLV 605 (759)
T ss_pred HHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHh--cCcccchhhHHHHHHHHHHHHhccHHH---HHHHhHHHHHhc
Confidence 345577777777777777785432222222 22221 223699999999999999988754211 245666677777
Q ss_pred cCchhhhhhHHHHHHhHHHHHHHhhHHHHHh--CccchHHHHHHHHHhcccCchHHHHHHHHHHHH
Q 004414 492 ASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQTNARPLLLFLAAGISEAVSSNACASALRKIC 555 (755)
Q Consensus 492 ~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~--~p~~l~~~l~~l~~~l~~p~v~~~Aa~al~~l~ 555 (755)
.+|.+. ||... +..+-+.-..+.. ..+.+.++++++.+ =.+.+++.+|-.|+..+.
T Consensus 606 ~D~van------VR~nv-ak~L~~i~~~L~~~~~~~~v~pll~~L~~-d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 606 KDPVAN------VRINV-AKHLPKILKLLDESVRDEEVLPLLETLSS-DQELDVRYRAILAFGSIE 663 (759)
T ss_pred cCCchh------hhhhH-HHHHHHHHhhcchHHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHHH
Confidence 888753 66655 3666666665532 22355666666655 112347888877776654
No 120
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.16 E-value=1.2e+02 Score=27.40 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=24.0
Q ss_pred hhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHH
Q 004414 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVR 225 (755)
Q Consensus 186 ~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~ 225 (755)
++.+.+++...+.+. +.+++..||+|+..|=.
T Consensus 15 ~~~l~~~~~~LL~~~--------d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 15 SDELYDALLRLLSSR--------DPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHhCc
Confidence 456666777767663 46799999999999944
No 121
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.01 E-value=9.3e+02 Score=28.34 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHhhhhhccccCCccchHHHHHHHHHhc---cCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHh
Q 004414 461 LFALNVVSEVVLQEGQAFDFSVIMQLVAVLS---ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAG 537 (755)
Q Consensus 461 L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~---~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~ 537 (755)
||...-+.+--..++... ++++-+...+. +||+. -+|..|+ +.+.+.-+ |+++++.++.+..+
T Consensus 77 ly~ywE~vPKt~~dgkl~--~EMILvcna~RkDLQHPNE------yiRG~TL-RFLckLkE-----~ELlepl~p~Irac 142 (948)
T KOG1058|consen 77 LYYYWELVPKTDSDGKLL--HEMILVCNAYRKDLQHPNE------YIRGSTL-RFLCKLKE-----PELLEPLMPSIRAC 142 (948)
T ss_pred HHHHHHHccccCCCcccH--HHHHHHHHHHhhhccCchH------hhcchhh-hhhhhcCc-----HHHhhhhHHHHHHH
Q ss_pred cccCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHH-----------------------------HHHHh-cCCCh
Q 004414 538 ISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIG-----------------------------EALEK-RHLPL 585 (755)
Q Consensus 538 l~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~-----------------------------~~l~~-~~l~~ 585 (755)
|.|+. |++.|.-|+..+=......+ |...+.+.... .++.. +.++.
T Consensus 143 leHrhsYVRrNAilaifsIyk~~~~L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~ 220 (948)
T KOG1058|consen 143 LEHRHSYVRRNAILAIFSIYKNFEHLI--PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFND 220 (948)
T ss_pred HhCcchhhhhhhheeehhHHhhhhhhc--CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccH
Q ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 004414 586 EDEEEVVGAISLILGSVSNKELKNNLLARLLSSS 619 (755)
Q Consensus 586 ~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~ 619 (755)
.-+.-++|-|=.+..+-|.++ ..+++-+++-+
T Consensus 221 ~LqlViVE~Irkv~~~~p~~~--~~~i~~i~~lL 252 (948)
T KOG1058|consen 221 SLQLVIVELIRKVCLANPAEK--ARYIRCIYNLL 252 (948)
T ss_pred HHHHHHHHHHHHHHhcCHHHh--hHHHHHHHHHH
No 122
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=20.85 E-value=1.7e+03 Score=27.93 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCC--CcHHHHHHHHHHHhhcCCC--------hhHHHHHh
Q 004414 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG--------LPQALLCR 280 (755)
Q Consensus 211 ~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~~~~--------~~~~l~~~ 280 (755)
+.+.++|.-+..--.|. + +....+.+++.+..++.++ .++..|++++++++..-++ |++.|+|.
T Consensus 438 ~tK~~ALeLl~~lS~~i-----~-de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYI-----D-DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred hhHHHHHHHHHHHhhhc-----c-hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 35566666666665543 1 2344567888888888876 4688999999999885432 56778877
Q ss_pred hhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHH
Q 004414 281 VPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIV 320 (755)
Q Consensus 281 ~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~ 320 (755)
+-.+.. .....-+.-.++.-+..++.....++.
T Consensus 512 L~~l~~-------d~~~~~vRiayAsnla~LA~tA~rFle 544 (1431)
T KOG1240|consen 512 LNHLLN-------DSSAQIVRIAYASNLAQLAKTAYRFLE 544 (1431)
T ss_pred hHhhhc-------cCccceehhhHHhhHHHHHHHHHHHHH
Confidence 654311 111122334566666666666555553
Done!