Query 004414
Match_columns 755
No_of_seqs 168 out of 1082
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 00:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibv_A Exportin-T; karyopherin 100.0 5.8E-77 2E-81 710.9 61.5 686 6-753 5-767 (980)
2 4hat_C Exportin-1; heat repeat 100.0 2.1E-70 7.2E-75 654.1 53.2 688 6-753 15-784 (1023)
3 2x1g_F Cadmus; transport prote 100.0 3.2E-69 1.1E-73 656.8 52.9 708 1-753 1-759 (971)
4 3gjx_A Exportin-1; transport, 100.0 1.5E-68 5.3E-73 633.2 49.1 699 6-753 27-810 (1073)
5 2x19_B Importin-13; nuclear tr 100.0 1.7E-66 5.8E-71 633.1 66.2 698 5-753 22-751 (963)
6 3m1i_C Exportin-1; heat repeat 100.0 8.3E-56 2.8E-60 540.8 54.9 681 6-753 15-784 (1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 2.3E-54 7.8E-59 529.5 47.6 704 6-752 10-855 (1204)
8 1wa5_C Importin alpha RE-expor 100.0 3E-33 1E-37 338.9 50.1 623 3-733 1-687 (960)
9 4fdd_A Transportin-1; heat rep 100.0 5.7E-33 2E-37 333.1 49.2 600 4-737 10-639 (852)
10 2bpt_A Importin beta-1 subunit 100.0 8.7E-30 3E-34 306.3 52.5 612 7-737 4-649 (861)
11 1qgr_A Protein (importin beta 100.0 2.2E-26 7.5E-31 277.2 53.0 613 9-738 3-660 (876)
12 1ibr_B P95, importin beta-1 su 99.9 2.7E-23 9.1E-28 231.0 34.5 432 9-539 3-461 (462)
13 1u6g_C TIP120 protein, CAND1; 99.5 1.9E-11 6.6E-16 152.1 42.5 569 6-737 5-620 (1230)
14 4fdd_A Transportin-1; heat rep 99.4 1.4E-08 4.8E-13 121.3 46.1 437 209-738 103-580 (852)
15 1b3u_A Protein (protein phosph 99.2 6.9E-08 2.4E-12 109.9 37.6 561 6-713 9-585 (588)
16 2bpt_A Importin beta-1 subunit 99.2 6.1E-07 2.1E-11 107.2 47.4 591 6-738 93-734 (861)
17 1qgr_A Protein (importin beta 99.1 1.1E-06 3.8E-11 105.2 47.7 444 214-739 107-618 (876)
18 1b3u_A Protein (protein phosph 99.0 8.3E-07 2.8E-11 100.9 38.8 474 9-599 88-586 (588)
19 1u6g_C TIP120 protein, CAND1; 98.7 9.8E-05 3.4E-09 91.7 42.9 513 8-604 86-725 (1230)
20 2qk1_A Protein STU2; STU2P, XM 98.3 8.7E-05 3E-09 73.9 21.1 197 451-728 27-234 (249)
21 1ibr_B P95, importin beta-1 su 98.1 0.0077 2.6E-07 65.5 33.5 283 239-573 126-454 (462)
22 2vgl_B AP-2 complex subunit be 98.0 0.0038 1.3E-07 70.6 30.5 459 17-598 58-530 (591)
23 2qk2_A LP04448P; mini spindles 97.9 0.00066 2.3E-08 67.2 18.5 98 451-556 26-127 (242)
24 1w63_A Adapter-related protein 97.4 0.29 1E-05 55.3 37.6 430 59-599 120-576 (618)
25 2jdq_A Importin alpha-1 subuni 97.3 0.0024 8.4E-08 69.3 15.6 331 209-600 33-390 (450)
26 4b8j_A Importin subunit alpha- 97.1 0.041 1.4E-06 61.1 23.1 404 243-727 76-509 (528)
27 1wa5_B Importin alpha subunit; 97.1 0.014 4.7E-07 65.0 19.0 330 209-601 100-458 (530)
28 2vgl_B AP-2 complex subunit be 97.0 0.11 3.9E-06 58.4 25.5 413 17-554 95-530 (591)
29 4b8j_A Importin subunit alpha- 96.9 0.055 1.9E-06 60.0 20.9 329 209-602 87-445 (528)
30 1wa5_C Importin alpha RE-expor 96.8 0.14 4.7E-06 61.5 24.7 254 453-738 471-772 (960)
31 3tpo_A Importin subunit alpha- 96.7 0.094 3.2E-06 58.2 21.2 334 209-600 89-449 (529)
32 2z6g_A B-catenin; FULL-length, 96.6 1.7 5.8E-05 50.5 32.5 289 8-353 116-422 (780)
33 2x1g_F Cadmus; transport prote 96.5 2.3 7.7E-05 50.9 34.5 194 504-737 437-638 (971)
34 1wa5_B Importin alpha subunit; 96.4 0.048 1.6E-06 60.6 16.4 306 188-560 130-461 (530)
35 3ul1_B Importin subunit alpha- 96.4 0.064 2.2E-06 59.3 16.8 332 209-600 70-430 (510)
36 2jdq_A Importin alpha-1 subuni 95.8 2.3 7.7E-05 45.4 25.5 296 12-359 69-390 (450)
37 1w63_A Adapter-related protein 95.5 4.3 0.00015 45.7 31.2 301 209-576 120-432 (618)
38 2qk1_A Protein STU2; STU2P, XM 95.1 0.89 3.1E-05 44.6 17.5 151 452-615 73-234 (249)
39 2qk2_A LP04448P; mini spindles 94.7 0.85 2.9E-05 44.4 16.1 139 452-605 69-210 (242)
40 2x19_B Importin-13; nuclear tr 94.1 13 0.00043 44.2 31.4 161 454-628 699-874 (963)
41 1oyz_A Hypothetical protein YI 94.0 5.2 0.00018 39.5 22.7 212 9-267 25-249 (280)
42 4hxt_A De novo protein OR329; 93.2 6.1 0.00021 37.9 19.5 220 9-270 4-243 (252)
43 2z6g_A B-catenin; FULL-length, 92.9 17 0.00057 42.0 39.9 303 187-556 191-518 (780)
44 2iw3_A Elongation factor 3A; a 92.5 2.5 8.6E-05 49.6 17.1 231 458-738 70-305 (986)
45 4db8_A Armadillo-repeat protei 92.3 3.5 0.00012 39.9 15.9 230 38-310 10-248 (252)
46 2vgl_A Adaptor protein complex 91.8 19 0.00066 40.2 36.2 128 18-157 84-215 (621)
47 1w9c_A CRM1 protein, exportin 91.5 6.6 0.00023 39.5 16.5 168 212-395 45-225 (321)
48 4hat_C Exportin-1; heat repeat 91.3 2.5 8.6E-05 50.5 15.8 208 504-739 469-700 (1023)
49 3ul1_B Importin subunit alpha- 91.3 19 0.00065 39.1 26.1 293 9-351 59-379 (510)
50 4hxt_A De novo protein OR329; 90.6 12 0.00042 35.6 18.0 226 44-313 6-241 (252)
51 1oyz_A Hypothetical protein YI 88.9 11 0.00039 36.9 16.3 145 416-598 39-186 (280)
52 4db6_A Armadillo repeat protei 88.8 0.37 1.3E-05 45.6 4.8 137 451-602 23-169 (210)
53 2iw3_A Elongation factor 3A; a 88.8 7.2 0.00025 45.8 16.3 213 455-719 110-328 (986)
54 2of3_A ZYG-9; multifunctional 88.6 9.4 0.00032 37.4 14.7 135 343-520 100-238 (266)
55 4db6_A Armadillo repeat protei 87.4 10 0.00035 35.2 14.2 189 38-267 10-208 (210)
56 3m1i_C Exportin-1; heat repeat 87.4 40 0.0014 40.4 22.6 158 546-738 432-600 (1049)
57 1xqr_A HSPBP1 protein; armadil 86.9 1.9 6.4E-05 43.5 8.8 137 451-602 93-240 (296)
58 3tpo_A Importin subunit alpha- 85.7 44 0.0015 36.3 25.4 295 9-353 78-400 (529)
59 1jdh_A Beta-catenin; beta-cate 83.5 52 0.0018 35.4 29.9 263 40-357 17-293 (529)
60 3ibv_A Exportin-T; karyopherin 83.3 81 0.0028 37.3 24.7 84 540-631 714-797 (980)
61 3gjx_A Exportin-1; transport, 82.9 86 0.0029 37.4 24.0 169 211-395 752-933 (1073)
62 3ltm_A Alpha-REP4; protein eng 82.9 29 0.001 32.0 15.6 134 416-598 35-170 (211)
63 4db8_A Armadillo-repeat protei 82.7 19 0.00066 34.4 14.0 213 12-266 17-249 (252)
64 3ltj_A Alpharep-4; protein eng 82.1 17 0.00057 33.5 12.8 134 416-598 61-196 (201)
65 2z6h_A Catenin beta-1, beta-ca 75.4 1.1E+02 0.0037 34.1 36.5 265 38-357 12-290 (644)
66 1xqr_A HSPBP1 protein; armadil 74.8 70 0.0024 31.7 16.3 182 4-225 25-238 (296)
67 3now_A UNC-45 protein, SD10334 71.2 1.5E+02 0.0052 34.0 32.2 446 59-601 217-738 (810)
68 2db0_A 253AA long hypothetical 71.0 16 0.00053 33.4 8.1 119 459-600 126-246 (253)
69 1te4_A Conserved protein MTH18 67.2 8.3 0.00028 32.9 5.7 75 452-553 54-130 (131)
70 3ltm_A Alpha-REP4; protein eng 62.8 92 0.0032 28.4 19.9 173 9-225 21-203 (211)
71 2of3_A ZYG-9; multifunctional 61.2 1.2E+02 0.0042 29.4 20.1 168 60-270 60-238 (266)
72 3u0r_A Apoptosis inhibitor 5; 61.1 52 0.0018 34.9 11.1 45 510-557 49-95 (507)
73 4ffb_C Protein STU2; tubulin f 49.5 81 0.0028 30.7 10.2 137 450-601 19-169 (278)
74 3nmw_A APC variant protein; AR 45.6 1.8E+02 0.0061 29.6 12.4 182 504-714 100-291 (354)
75 4ady_A RPN2, 26S proteasome re 41.2 3.3E+02 0.011 31.7 14.6 52 503-560 627-680 (963)
76 3nmw_A APC variant protein; AR 37.4 61 0.0021 33.1 7.2 143 452-604 183-338 (354)
77 1xm9_A Plakophilin 1; armadill 35.1 1.4E+02 0.0047 31.6 9.9 109 504-623 18-136 (457)
78 1jdh_A Beta-catenin; beta-cate 34.6 4.3E+02 0.015 27.8 25.3 249 16-313 25-295 (529)
79 3ltj_A Alpharep-4; protein eng 33.3 2.6E+02 0.009 24.9 19.9 176 8-221 15-194 (201)
80 1w9c_A CRM1 protein, exportin 32.9 2.3E+02 0.008 28.2 10.2 50 684-734 71-122 (321)
81 3nmz_A APC variant protein; pr 30.2 2.2E+02 0.0076 30.1 10.3 182 504-714 216-407 (458)
82 3oc3_A Helicase MOT1, MOT1; re 29.2 2.4E+02 0.0081 30.8 9.8 119 457-600 245-365 (800)
83 3nmz_A APC variant protein; pr 29.0 1.7E+02 0.006 30.9 9.2 142 452-603 299-453 (458)
84 2z6h_A Catenin beta-1, beta-ca 28.4 6.2E+02 0.021 27.7 35.4 297 9-358 58-381 (644)
85 3now_A UNC-45 protein, SD10334 27.5 7.4E+02 0.025 28.3 27.1 270 41-359 496-782 (810)
86 3l6x_A Catenin delta-1; cateni 26.7 2.4E+02 0.008 31.0 9.9 68 529-600 90-163 (584)
87 3tjz_B Coatomer subunit gamma; 26.3 67 0.0023 32.8 5.1 93 451-561 79-173 (355)
88 3tjz_B Coatomer subunit gamma; 25.0 1.9E+02 0.0066 29.4 8.3 67 480-556 137-205 (355)
89 1te4_A Conserved protein MTH18 24.1 1.7E+02 0.0059 24.2 6.8 51 15-72 49-99 (131)
90 1xm9_A Plakophilin 1; armadill 22.7 2.2E+02 0.0076 29.9 8.8 117 452-576 56-195 (457)
91 2jak_A Serine/threonine-protei 21.5 5.9E+02 0.02 26.1 11.1 128 213-355 233-363 (392)
92 3b2a_A TON_1937, putative unch 21.3 5.4E+02 0.018 24.5 17.3 194 31-270 24-220 (265)
No 1
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=5.8e-77 Score=710.92 Aligned_cols=686 Identities=13% Similarity=0.146 Sum_probs=538.9
Q ss_pred HHHHHHHHHH-hccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChH
Q 004414 6 QIKVAQAVHV-LNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (755)
Q Consensus 6 ~~~v~~av~~-ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~ 84 (755)
.++|.+||+. +++++|++.|++|++||++||++|+||++|..+|..... .+.++||||+++|++||+ .++++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~---~~~~vr~fa~~~L~~~I~----~l~~e 77 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTK---YKPSTRLICLQTLSEKVR----EWNNE 77 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTT---SCHHHHHHHHHHHHHHHH----HCCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHHHH----hCChh
Confidence 4679999965 444569999999999999999999999999999977531 257999999999999999 79999
Q ss_pred ----HHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhcccCCC-chhHHHHHHHhh
Q 004414 85 ----AKDALLNALLVAAKRFS--SGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQD-NGNMAVLEMLTV 155 (755)
Q Consensus 85 ----~~~~Lr~~Ll~~l~~~~--~~~~~v~~kL~~~la~l~~~~-~-~W~~~i~~li~~~~~~~~~~-~~~~~lL~iL~~ 155 (755)
++..||+.|++++.+.. .+|++|+||+|.+++.++.+. + .||++++++++.++++ ++ .....+|++|..
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~--~~~~~~~~~LriL~~ 155 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS--SQSEFSNFYLKVLLS 155 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH--CCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC--ChhHHHHHHHHHHHH
Confidence 99999999999999854 468999999999999999996 3 7999999999999763 22 345667888888
Q ss_pred hhhhcccccccccCCCH---HHHHHHHHHHHhc-----hhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhc
Q 004414 156 LPEEVIDSQASDCNISS---AHRSQYGQELLSH-----TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAG 227 (755)
Q Consensus 156 l~EE~~~~~~~~~~~~~---~~r~~~~~~l~~~-----~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~ 227 (755)
|+||+.+.. +. .+. .|++.+++.+..+ .+.++.++.+...+ .++++...+|+|+.+|+.
T Consensus 156 i~EEv~~~~-~~--~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~--------~~~~l~~~~L~~l~s~i~-- 222 (980)
T 3ibv_A 156 IGDEIADSL-VL--KTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA--------KNYGTVGLCLQVYAQWVS-- 222 (980)
T ss_dssp HHHHHCCCC-SC--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHhcc-cc--cCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHh--
Confidence 889998653 21 232 3444566667665 44555555544332 235688999999999998
Q ss_pred cccccCcchhcccchHHHHHhhcCCCCcHHHHHHHHHHHhhcCCChhH--HHHHhhhhhHHHhhhhhhc-CCCHHHHhHH
Q 004414 228 CFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQ--ALLCRVPFLKELLLLPALT-DGDEKVIGGL 304 (755)
Q Consensus 228 ~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eii~~~~~~~~--~l~~~~~~l~~~~~~~~~~-~~d~e~~~~l 304 (755)
|+|.+.+.++++++.+|+.|.+++++++|++|++++++++++... .++. .+++.+.+.. ... ++|.|+.+++
T Consensus 223 ---wi~~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~-~l~L~~~~~~-l~~~~~D~d~~~~l 297 (980)
T 3ibv_A 223 ---WININLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLN-ILNLNLFFSK-SQEQSTDPNFDEHV 297 (980)
T ss_dssp ---TSCHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHCC------CCHHHHHHH
T ss_pred ---hcCHHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHH-HHhHHHHHHH-HhcccccHHHHHHH
Confidence 889988888999999999999999999999999999999876332 2222 2455665542 222 6889999999
Q ss_pred HHHHHHHHHHhhHHHHhcC------------hhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhh
Q 004414 305 ACLMSEIGQAAPSLIVEAS------------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNK 372 (755)
Q Consensus 305 ~~l~~~l~e~~~~~l~~~~------------~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~ 372 (755)
|++++++|+++... .+.+ +.+..+++++|.|++|| +++|+..|++||+.+.+.+...+. +
T Consensus 298 a~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~~-----~ 369 (980)
T 3ibv_A 298 AKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKESS-----S 369 (980)
T ss_dssp HHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHHTT-----S
T ss_pred HHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHHHHhccc-----c
Confidence 99999999999998 6655 45568999999999997 679999999999998875421110 1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhccCCCCCCC-CCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHH----hhcC
Q 004414 373 KHVEDMFFSVFSALLDALLLRAQVDESSFND-DGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFG----SWGS 447 (755)
Q Consensus 373 ~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~-~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~----~~~~ 447 (755)
+.....++|++.+|++++++||+||+++.++ ++|.|++++|.+||++++ .+.+++.++|++.++..++.. +...
T Consensus 370 ~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~ 448 (980)
T 3ibv_A 370 KELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTA 448 (980)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 1345678999999999999999999875433 234577789999999999 999999999998888744332 2111
Q ss_pred --CCCCCChhhhHHHHHHHHhhhhhcccc------CCccchHHHHHHHHHhc-----cCchhhhhhHHHHHHhHHHHHHH
Q 004414 448 --ANVPIPWKEVETKLFALNVVSEVVLQE------GQAFDFSVIMQLVAVLS-----ASRSEELKGFMHIVYRSLADVIG 514 (755)
Q Consensus 448 --~~~~~~W~~~EA~L~~l~~iae~~~~~------~~~~~l~~i~~ll~~l~-----~~~~~~~~~~~~v~~~t~~~~ig 514 (755)
...+.+|+++||+||+++++||++... .+. .++.++.++..+. +++|+ .||+++ |+++|
T Consensus 449 l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~-~lp~l~~ll~~ll~s~i~~~~hp------~V~~~~-~~~l~ 520 (980)
T 3ibv_A 449 ATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDK-SPTVLSQILALVTTSQVCRHPHP------LVQLLY-MEILV 520 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSC-CBCHHHHHHHHHHHSSTTTCCCH------HHHHHH-HHHHH
T ss_pred hcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccc-hhHHHHHHHHHHHhCCCCCCCCH------HHHHHH-HHHHH
Confidence 112357999999999999999998742 111 2577888777663 35554 378887 69999
Q ss_pred hhHHHHHhCccchHHHHHHHHH--hcccC--chHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHH-HHHhcCC------
Q 004414 515 SYSKWISAFQTNARPLLLFLAA--GISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGE-ALEKRHL------ 583 (755)
Q Consensus 515 ~y~~~~~~~p~~l~~~l~~l~~--~l~~p--~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~-~l~~~~l------ 583 (755)
||++|+..||++++++|++++. |+++| +|+.+||+||.+||++|++++. | +.+.+++.+. .+.....
T Consensus 521 rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~-~-~~~~il~~l~~lL~~~~~~~~~~~ 598 (980)
T 3ibv_A 521 RYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV-N-YTESSLAMLGDLLNISVSPVTDMD 598 (980)
T ss_dssp HTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS-S-SHHHHHHHTTGGGCCCCCCCCC--
T ss_pred HHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh-h-HHHHHHHHHHHhhcCcCCCCCccc
Confidence 9999999999999999999999 99875 5999999999999999999985 4 5555444433 3321111
Q ss_pred -------------ChhhHHHHHHHHHHHHccC--CchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHH
Q 004414 584 -------------PLEDEEEVVGAISLILGSV--SNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSS 648 (755)
Q Consensus 584 -------------~~~~~~~l~eai~~vi~~~--p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 648 (755)
.++++.+++||+|.+++.. |.++ +..+++.+++|++.+++++++....++ + ... ++..
T Consensus 599 ~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~-~~~~l~~ll~pl~~~l~~~l~~~~~~~---~--~~~-~i~~ 671 (980)
T 3ibv_A 599 APVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEE-QALYCDSLINALIGKANAALSSDLSAL---E--NII-SVYC 671 (980)
T ss_dssp CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHH-HHHHHHHHHHHHHHHHHHHHTTSCC-----C--HHH-HHHH
T ss_pred ccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHHHHHHHHhhcccCc---c--HHH-HHHH
Confidence 1457999999999999875 4554 489999999999999999998654321 1 111 3445
Q ss_pred HHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHH
Q 004414 649 ATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQV 728 (755)
Q Consensus 649 ~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~ 728 (755)
.+..+..+++.|++.. ...+|+..+++++|+++..+++ .|+++..|+|++|.+++++++++|.++.|++|++
T Consensus 672 ~i~al~~lakgf~~~~-------~~~~p~~~~f~~~~~~il~~l~-~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~ 743 (980)
T 3ibv_A 672 SLMAIGNFAKGFPARG-------SEEVAWLASFNKASDEIFLILD-RMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQL 743 (980)
T ss_dssp HHHHHHHHHHTSCSCC--------CCCSHHHHHHHHHHHHHHHHH-HSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHH
T ss_pred HHHHHHHHhccCCccc-------CCCCcHHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHH
Confidence 5666677777776542 2357788999999999999999 5999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccceeeeccccc
Q 004414 729 LDCLSTNFVSFQNHECYIRTGKSFF 753 (755)
Q Consensus 729 ~~~l~~~f~~~~~~s~~l~~~s~~~ 753 (755)
++.+++.|+.+ .++||||+++.+.
T Consensus 744 i~~ll~~~~~~-e~~~fL~l~~qli 767 (980)
T 3ibv_A 744 ISILLNSIDMN-ELVDVLSFISQLI 767 (980)
T ss_dssp HHHHHHHCCTT-THHHHHHHHHHHH
T ss_pred HHHHHhcCCHH-HHHHHHHHHHHHH
Confidence 99999999986 8999999987653
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=2.1e-70 Score=654.13 Aligned_cols=688 Identities=14% Similarity=0.164 Sum_probs=524.2
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHH
Q 004414 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (755)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~ 85 (755)
.++++++|+++|++++ ..|++|++||++||++|++|.+|..+|+.+. +.++|||||++|+++|+++|+.+|+++
T Consensus 15 v~~Le~av~~ly~p~~-~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~-----~~~vR~faa~~Lk~~I~~~W~~L~~e~ 88 (1023)
T 4hat_C 15 IALLDQVVSTFYQGSG-VQQKQAQEILTKFQDNPDAWQKADQILQFST-----NPQSKFIALSILDKLITRKWKLLPNDH 88 (1023)
T ss_dssp HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCTTGGGGHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHcCccHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 4679999999997654 4899999999999999999999999997643 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 004414 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (755)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~~la~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (755)
+..||+.|++++.++..+ ++.+++|||.+++.++.+. + .||++++++++.+++ ++.....+|++|+.|+
T Consensus 89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~---~~~~~~~~L~iL~~L~ 165 (1023)
T 4hat_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLS 165 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Confidence 999999999999876533 4789999999999999987 3 799999999999975 3456889999999999
Q ss_pred hhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 004414 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (755)
Q Consensus 158 EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~ 237 (755)
||+.+... ..++..+|+.+++.+....+.|+.++.++++... ++++...+|+|+.+|+. |+|.+.+
T Consensus 166 EEV~~~~~--~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-------~~~l~~~~L~~l~s~l~-----WI~i~~i 231 (1023)
T 4hat_C 166 EEVFDFSA--EQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-------SSSLIVATLESLLRYLH-----WIPYRYI 231 (1023)
T ss_dssp HHHHTSCT--TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-------SCHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred HHHHHhhh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHH-----hCCHHHh
Confidence 99975322 1267788999999999999999999999998743 34688999999999998 8999888
Q ss_pred cccchHHHHH-hhcCCCCcHHHHHHHHHHHhhcCC--C---hhH---HHHHhhh------------hhHHHhhhhhhcCC
Q 004414 238 AAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHE--G---LPQ---ALLCRVP------------FLKELLLLPALTDG 296 (755)
Q Consensus 238 ~~~~ll~~~~-~~L~~~~~~~~a~~~l~eii~~~~--~---~~~---~l~~~~~------------~l~~~~~~~~~~~~ 296 (755)
.++++++.+| ++|.+++++++|++|+++++++.. + +.+ .++..++ .+.+.+. ...++
T Consensus 232 ~~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~--~~~~~ 309 (1023)
T 4hat_C 232 YETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NANGN 309 (1023)
T ss_dssp HSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHH--HTCTT
T ss_pred cchhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHh--ccccc
Confidence 8999999999 999999999999999999998432 2 322 2222222 3334442 22345
Q ss_pred CHHHHhHHHHHHHHHHHHhhHHHHhcCh---hHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhh
Q 004414 297 DEKVIGGLACLMSEIGQAAPSLIVEASP---EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK 373 (755)
Q Consensus 297 d~e~~~~l~~l~~~l~e~~~~~l~~~~~---~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~ 373 (755)
|.++++++|++|+++|++|...+.+++. .....++.|+.++.++ |+++...|++||+.|+++++.. +
T Consensus 310 D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~--d~ei~~~tl~FW~~L~~~l~~e--------~ 379 (1023)
T 4hat_C 310 DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYE--------P 379 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTTS--------T
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHhc--------h
Confidence 7889999999999999999998876532 1234566899999997 7899999999999999987642 1
Q ss_pred hhhhhhHHHHHHHHHHHHHHhccCCCC-----CCCCC------CCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHH
Q 004414 374 HVEDMFFSVFSALLDALLLRAQVDESS-----FNDDG------MVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFF 442 (755)
Q Consensus 374 ~~~~~~~~~~~~Ll~~l~~k~~~p~~~-----~~~~~------~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~ 442 (755)
.....|+|+|.+|+.++++||+||++. ..++| |.|+.+.|+.|| |++.+++.+.|+ .++..+++
T Consensus 380 ~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~-~~~~~~~~ 454 (1023)
T 4hat_C 380 LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVI-DTEEIMIS 454 (1023)
T ss_dssp TTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHH-HHHHHHHH
Confidence 345689999999999999999999842 22233 445566788887 899999998776 46666665
Q ss_pred HhhcC-CCCCCChhhhHHHHHHHHhhhhhcccc-CCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHH
Q 004414 443 GSWGS-ANVPIPWKEVETKLFALNVVSEVVLQE-GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWI 520 (755)
Q Consensus 443 ~~~~~-~~~~~~W~~~EA~L~~l~~iae~~~~~-~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~ 520 (755)
.+... ...+.+|+.+||++||+|+|++++.++ .+.. ++.++..+..++++....... ..++.++ ||++|||++|+
T Consensus 455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~-l~~vi~~Ll~l~~~~~~~d~k-~~v~~t~-~~~lGry~~wl 531 (1023)
T 4hat_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRF-VVTVIKDLLDLCVKKRGKDNK-AVVASDI-MYVVGQYPRFL 531 (1023)
T ss_dssp HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHH-HHHHHHHHHHHHHHCCSHHHH-HHHHHHH-HHHHHTCHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHH-HHHHHHHHHHhhhccccCcch-HHHHHHH-HHHHHHHHHHH
Confidence 54321 113468999999999999999998754 2222 456666555666531111011 0355555 79999999999
Q ss_pred HhCccchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhcccCC------CchHHHHHHHHHHHHhcCCChhhHHHHH
Q 004414 521 SAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDE------PSNLEILMWIGEALEKRHLPLEDEEEVV 592 (755)
Q Consensus 521 ~~~p~~l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~l~~------~~~~~~l~~~~~~l~~~~l~~~~~~~l~ 592 (755)
..||++|++++++++.++.+ |+++.+||.||++||++|+..+.. +++++.+.+.+.... ..++.+.+..+|
T Consensus 532 ~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~-~~l~~~~~~~ly 610 (1023)
T 4hat_C 532 KAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTT-ADLQPQQVHTFY 610 (1023)
T ss_dssp HHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHH-TTSCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 99999999999999999964 679999999999999999987732 236666555444432 367889999999
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHH--HHHHHHHHHHHhhhhhcccccccCCCC
Q 004414 593 GAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYT--QILSSATRGLYRMGTVFSHLPVPLPTN 670 (755)
Q Consensus 593 eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~l~~L~~~f~~l~~~~~~~ 670 (755)
||+|.+++++|+++.+..+++.++.|+...++++.++.. .+|..+. +..+.....+++++.+.+.++
T Consensus 611 eai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~-----~~~~~~~d~~~~~~l~~il~~~~~v~~~lg------ 679 (1023)
T 4hat_C 611 KACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQST-----ANPTLLLDSETVKIIANIIKTNVAVCTSMG------ 679 (1023)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHH-----HCTTGGGCHHHHHHHHHHHHHHHHHHHHHG------
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHh-----cCchhhcCHHHHHHHHHHHHHHHHHHHHhc------
Confidence 999999999998876789999999999999999986431 1222111 123344455555666555544
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhhccc--------hHH-----HHHHHHHHHHHHH-----HHhhh------hHhhHH
Q 004414 671 PAGDDPIFALLRVFWPMLEKLFRSEHMEN--------GNL-----STAACRALSLAIQ-----SSGQH------FVTLLP 726 (755)
Q Consensus 671 ~~~~~p~~~~~~~~~~~l~~i~~~~~~~~--------~~v-----~e~~~~~~~~~~~-----~l~~~------~~~~l~ 726 (755)
++..+.++.+||.+..+.+. +.+. +.+ ..+.|+++|+-+- .++.. ...++|
T Consensus 680 ----~~f~~~~~~i~~~~l~~y~~-~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~ 754 (1023)
T 4hat_C 680 ----ADFYPQLGHIYYNMLQLYRA-VSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVE 754 (1023)
T ss_dssp ----GGGHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHH
Confidence 44677788888888777652 3110 001 1134555544322 22221 445899
Q ss_pred HHHHHHHHHHhhcC---Cccceeeeccccc
Q 004414 727 QVLDCLSTNFVSFQ---NHECYIRTGKSFF 753 (755)
Q Consensus 727 ~~~~~l~~~f~~~~---~~s~~l~~~s~~~ 753 (755)
++++.++.-|..+. ++||+||++|.+.
T Consensus 755 ~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv 784 (1023)
T 4hat_C 755 PLLNAVLEDYMNNVPDARDAEVLNCMTTVV 784 (1023)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChhhccHHHHHHHHHHH
Confidence 99999999999852 3699999998764
No 3
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=3.2e-69 Score=656.83 Aligned_cols=708 Identities=16% Similarity=0.278 Sum_probs=532.3
Q ss_pred CCchHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCC
Q 004414 1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (755)
Q Consensus 1 m~~~~~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~ 80 (755)
|+.-+.++|.++++++|+ +|++.|++|++||++||++|++|.+|..||.... +.++|||||++|++||+++|..
T Consensus 1 m~~~d~~~l~~~l~~~~~-~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~-----~~~vr~~aa~~L~~~i~~~w~~ 74 (971)
T 2x1g_F 1 MEPIDIARLEEAVVSFYR-SNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGK-----SQEVQFFGAITLHSKLMKHWHE 74 (971)
T ss_dssp ----------CTHHHHHT-STTTC----CHHHHHTTTSTHHHHHHHHHTCTTS-----CHHHHHHHHHHHHHHHHHCGGG
T ss_pred CChhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHccHhh
Confidence 442336779999999874 7888999999999999999999999999997643 5799999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHhhcccC----CCchhHHHHHHHhh
Q 004414 81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQS----QDNGNMAVLEMLTV 155 (755)
Q Consensus 81 l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~-~W~~~i~~li~~~~~~~~----~~~~~~~lL~iL~~ 155 (755)
+|++++..+|+.|++++.....+|+.|++|+|.+++.++.+.. .||+++++++..++++.. ++.....++++|+.
T Consensus 75 l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 75 VPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTA 154 (971)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence 9999999999999999988766789999999999999999976 899999999999875210 13467899999999
Q ss_pred hhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcc
Q 004414 156 LPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (755)
Q Consensus 156 l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~ 235 (755)
+|||+...+ +..+|..+.+.+....+.|+.++.++++...+++......+++..+++|+.+|+.++ |+|.+
T Consensus 155 l~EEi~~~~------~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~---~ip~~ 225 (971)
T 2x1g_F 155 IPEEAQVIH------TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI---GYTIE 225 (971)
T ss_dssp HHHHHHHCC------CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS---CCCGG
T ss_pred hHHHHhccC------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC---CcCcc
Confidence 999986321 345777788888889999999999988765321100001268999999999999974 67776
Q ss_pred hhcccchHHHHHhhc------------------CCCCcHHHHHHHHHHHhhcCC-----ChhHHHHHhhhhhHHHhhhhh
Q 004414 236 SLAAHPLLNFVFNSL------------------QVQSSFDVAIEVLVELVGRHE-----GLPQALLCRVPFLKELLLLPA 292 (755)
Q Consensus 236 ~~~~~~ll~~~~~~L------------------~~~~~~~~a~~~l~eii~~~~-----~~~~~l~~~~~~l~~~~~~~~ 292 (755)
..+++++.+|+ | .+++.+++|++|+.++++.++ ..+..+++.++++.+.+. .+
T Consensus 226 --~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ 301 (971)
T 2x1g_F 226 --GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEIT-KT 301 (971)
T ss_dssp --GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred --ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHH-HH
Confidence 56789999988 6 457889999999999998653 245667777777655543 24
Q ss_pred hcCCCH---HHHhHHHHHHHHHHHHhhHHHH----h----cChhHHHHHHHHHhcccCCC---CCcchhhhcHHHHHHHH
Q 004414 293 LTDGDE---KVIGGLACLMSEIGQAAPSLIV----E----ASPEALALADALLSCVAFPS---EDWEIADSTLQFWSTLA 358 (755)
Q Consensus 293 ~~~~d~---e~~~~l~~l~~~l~e~~~~~l~----~----~~~~~~~ll~~ll~~~~~p~---~d~~v~~~~~~FW~~l~ 358 (755)
..++|. +....+|++++.+|+.+...+. + .++.+..+++.++.++.+|| .+++|+..+++||+.+.
T Consensus 302 ~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~ 381 (971)
T 2x1g_F 302 EWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQ 381 (971)
T ss_dssp HSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHH
Confidence 455563 8899999999999999998876 3 23466789999999998854 26789999999999999
Q ss_pred HHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHH
Q 004414 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQ 438 (755)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~ 438 (755)
+++.++..+. +.+.....++|++.+++++++.|+.||+++..++|+.+|+++|.+||+.++|++++++.++|. .++.
T Consensus 382 ~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~-~~l~ 458 (971)
T 2x1g_F 382 DEVFAMSNDE--QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND-YILE 458 (971)
T ss_dssp HHHHC---------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHH
T ss_pred HHHHhccccc--chHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH-HHHH
Confidence 8553332110 012445678999999999999999999875445566677789999999999999999998884 4555
Q ss_pred HHHHHhhc---C-CCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhcc-CchhhhhhHHHHHHhHHHHHH
Q 004414 439 KVFFGSWG---S-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSA-SRSEELKGFMHIVYRSLADVI 513 (755)
Q Consensus 439 ~~~~~~~~---~-~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~-~~~~~~~~~~~v~~~t~~~~i 513 (755)
.++..+.. . ...+.+|+.+||++|+++++++++..+.... ++.+++++..++. ++++ .||.++ |+++
T Consensus 459 ~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~-l~~l~~~l~~l~~~d~~~------~vr~~a-~~~l 530 (971)
T 2x1g_F 459 ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQ-IPRLMRVLAEIPYEKLNV------KLLGTA-LETM 530 (971)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CH-HHHHHHHHHHSCTTTSCH------HHHHHH-HHHH
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHH-HHHHHHHHHhcCccccCH------HHHHHH-HHHH
Confidence 55443221 0 0123689999999999999999998644322 6777777777774 2343 378877 6999
Q ss_pred HhhHHHHHhCccchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHH-HHHHHhcCCChhhHHHHH
Q 004414 514 GSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWI-GEALEKRHLPLEDEEEVV 592 (755)
Q Consensus 514 g~y~~~~~~~p~~l~~~l~~l~~~l~~p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~-~~~l~~~~l~~~~~~~l~ 592 (755)
|+|++|+..||++++++++++++++ +|.|+.+||.||.+||++|+..+. | |++.+++. ...+.++.++.+++..++
T Consensus 531 ~~~~~~l~~~~~~l~~vl~~l~~~l-~~~v~~~A~~al~~l~~~~~~~l~-p-~~~~ll~~l~~~l~~~~~~~~~~~~~~ 607 (971)
T 2x1g_F 531 GSYCNWLMENPAYIPPAINLLVRGL-NSSMSAQATLGLKELCRDCQLQLK-P-YADPLLNACHASLNTGRMKNSDSVRLM 607 (971)
T ss_dssp HHTHHHHC----CHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHCHHHHH-H-HHHHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHhcc-c-cHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 9999999999999999999999999 599999999999999999999885 3 66655544 444555557889999999
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCC
Q 004414 593 GAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPA 672 (755)
Q Consensus 593 eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~ 672 (755)
+++|.+++++|.++. .+++..++.|++..++++++.... ++. .....+..+++|+.+++.+....+...+
T Consensus 608 ~ai~~i~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~~-----~~~----~~~~~~~~l~~L~~~~~~l~~~~~~~~~ 677 (971)
T 2x1g_F 608 FSIGKLMSLLRPEEI-PKYLDIIVSPCFEELQAICQADSK-----TPA----ARIRTIFRLNMISTLFSSLNTDVDEQAT 677 (971)
T ss_dssp HHHHHHHHTSCTTHH-HHHHHHHHHHHHHHHHHHHTC--------CHH----HHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHhCCHHHH-HHHHHHHHHHHHHHHHHHHhcCCC-----Chh----hHHHHHHHHHHHHHHHhhcCCCcCcccc
Confidence 999999999985554 899999999999999998765421 111 1234566778888888887753211110
Q ss_pred ---CCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhhcCCccceeeec
Q 004414 673 ---GDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTG 749 (755)
Q Consensus 673 ---~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~~~~~~s~~l~~~ 749 (755)
..+|+.++.+++||++..+++. +.++++++|++|.+++++++++|+++.||+|++++.++..|+.+ +++||||++
T Consensus 678 ~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~-~~~~~l~l~ 755 (971)
T 2x1g_F 678 DQPIVQPVLLVMQRTMPIFKRIAEM-WVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR-CCAPTLEIS 755 (971)
T ss_dssp ------CCHHHHHTTHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC---CCHHHHHHH
T ss_pred cccCCCchHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC-CchHHHHHH
Confidence 1578899999999999999984 87789999999999999999999999999999999999999996 889999999
Q ss_pred cccc
Q 004414 750 KSFF 753 (755)
Q Consensus 750 s~~~ 753 (755)
+.+.
T Consensus 756 ~~~i 759 (971)
T 2x1g_F 756 KTAI 759 (971)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 4
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=1.5e-68 Score=633.25 Aligned_cols=699 Identities=13% Similarity=0.188 Sum_probs=525.8
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHH
Q 004414 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (755)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~ 85 (755)
.+.+.++|.++|+ |+++.|++|++||++||++|++|..|..+|.... +.++||||+++|+++|+++|..+|+++
T Consensus 27 v~~Le~lv~~ly~-p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~-----~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 27 INLLDNVVNCLYH-GEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQ-----NMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHHHHTTTC-SSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CC-----SHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 5679999999996 4788999999999999999999999999997653 479999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 004414 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (755)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~~la~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (755)
+..||+.|++++.++..+ ++.+++|+|.++|.++.+. + .||++++++++.+++ ++.....+|++|+.|+
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~---~~~~~~~~L~IL~~L~ 177 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT---SESLCQNNMVILKLLS 177 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---CHHHHHHHHHHHHHHH
Confidence 999999999999876543 3678899999999999985 4 799999999998875 3457888999999999
Q ss_pred hhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 004414 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (755)
Q Consensus 158 EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~ 237 (755)
||+.+.++. .++..+|+++++.+....+.|+.++.++++... ++++...+|+|+.+|+. |+|.+.+
T Consensus 178 EEV~d~~~~--~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-------~~~lv~~~L~~L~~~~s-----WI~i~~i 243 (1073)
T 3gjx_A 178 EEVFDFSSG--QITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-------NAPLVHATLETLLRFLN-----WIPLGYI 243 (1073)
T ss_dssp HHHTTSHHH--HBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred HHHHhcccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------CHHHHHHHHHHHHHHHH-----hcCHHHh
Confidence 998764322 257788889999999999999999999997642 35678888999999987 7888888
Q ss_pred cccchHHHH-HhhcCCCCcHHHHHHHHHHHhhcCC-Ch---hHHHHHhhhh-----------hHHHhhhhhhcCCCHHHH
Q 004414 238 AAHPLLNFV-FNSLQVQSSFDVAIEVLVELVGRHE-GL---PQALLCRVPF-----------LKELLLLPALTDGDEKVI 301 (755)
Q Consensus 238 ~~~~ll~~~-~~~L~~~~~~~~a~~~l~eii~~~~-~~---~~~l~~~~~~-----------l~~~~~~~~~~~~d~e~~ 301 (755)
.++++++.+ |..|.+++++++|++|+++++++.- ++ +..++..++. +.+.+. ...++|.+++
T Consensus 244 ~~~~ll~~L~~~~L~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~--~~~~~d~e~~ 321 (1073)
T 3gjx_A 244 FETKLISTLIYKFLNVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYS--NGKDDEQNFI 321 (1073)
T ss_dssp HSSSHHHHHHHHTSSSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHH--TCCTTHHHHH
T ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHh--ccchhhHHHH
Confidence 899999988 7999999999999999999999742 22 2234444332 222221 1245667899
Q ss_pred hHHHHHHHHHHHHhhHHHHhcCh---hHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchh---h-------
Q 004414 302 GGLACLMSEIGQAAPSLIVEASP---EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS---I------- 368 (755)
Q Consensus 302 ~~l~~l~~~l~e~~~~~l~~~~~---~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~---~------- 368 (755)
+++|++|+++|++|...+.++|+ .....+++++.|++++ |+++..+||+||+.|.++++..... .
T Consensus 322 ~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~--d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~ 399 (1073)
T 3gjx_A 322 QNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE--ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGS 399 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 99999999999999999988754 3457788899999997 8999999999999999998743210 0
Q ss_pred -hhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHH---------HhHHHHHHHHhcCcHHHHH
Q 004414 369 -AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMN---------LVELLVDICQLLRSATFIQ 438 (755)
Q Consensus 369 -~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~---------~~d~l~~~~~~l~~~~~l~ 438 (755)
.++.+.....|+|+|.+|+.+++.||.+|++.+..+ .|+.|.|++||++ ++|++..++. ++++.++.
T Consensus 400 ~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e--~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~-l~~~~~~~ 476 (1073)
T 3gjx_A 400 QHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVE--NDQGEVVREFMKDTDSINLYKNMRETLVYLTH-LDYVDTEI 476 (1073)
T ss_dssp CCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEE--CSSSCEEEEECSSCHHHHHHHHHHHHHHHHHH-HCHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccC--cccchHHHHHHhhcchHHHHHHHHHHHHHHhc-CCHHHHHH
Confidence 001223566799999999999999999998744311 2344445455443 4445544433 45555677
Q ss_pred HHHHHhhcC-CCCCCChhhhHHHHHHHHhhhhhcccc-CCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhh
Q 004414 439 KVFFGSWGS-ANVPIPWKEVETKLFALNVVSEVVLQE-GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSY 516 (755)
Q Consensus 439 ~~~~~~~~~-~~~~~~W~~~EA~L~~l~~iae~~~~~-~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y 516 (755)
.+++.+... .....+|+.+||++|++|+++..+.++ ++.+ ++.+++.+..++++++...+. ++.++++|+++|+|
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~-Lp~vi~~Ll~L~e~~~~kd~k--~~vas~i~~vlgrY 553 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRF-LVTVIKDLLGLCEQKRGKDNK--AIIASNIMYIVGQY 553 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHH-HHHHHHHHHHHHHHSCSHHHH--HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccch-HHHHHHHHhcccccccccchh--HHHHHHHHHHHhhh
Confidence 666654321 113467999999999999999776642 2223 678888888888877432222 34555568999999
Q ss_pred HHHHHhCccchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhcccCC------CchHHHHHHHHHHHHhcCCChhhH
Q 004414 517 SKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDE------PSNLEILMWIGEALEKRHLPLEDE 588 (755)
Q Consensus 517 ~~~~~~~p~~l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~l~~------~~~~~~l~~~~~~l~~~~l~~~~~ 588 (755)
++|+..||++|++++++++.++++ |.|+.+||.||.+||++|++++.. .++++.+.+.+... ...+++++.
T Consensus 554 ~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~-~~~l~~~~~ 632 (1073)
T 3gjx_A 554 PRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTI-ICDLQPQQV 632 (1073)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHH-HTTCCHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHH-HHhcCHHHH
Confidence 999999999999999999999985 679999999999999999998743 12555555444432 467789999
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCC-CCCCCCChhHHHHHHHHHHHHHhhhhhcccccccC
Q 004414 589 EEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNN-HSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPL 667 (755)
Q Consensus 589 ~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~ 667 (755)
..+++|+|.+++++|.+..+..+++.+++|..+++++++++... .+...++.. ++.+...+++...+...+
T Consensus 633 ~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~----i~~l~~il~~n~~v~~~~---- 704 (1073)
T 3gjx_A 633 HTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPET----VKQLGSILKTNVRACKAV---- 704 (1073)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHH----HHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHH----HHHHHHHHhhhHHHHhhc----
Confidence 99999999999999998766899999999999999999875321 111122211 222232333332222222
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhhhcc--------ch-----HHHHHHHHHHHHHHH-----HHhhh------hHh
Q 004414 668 PTNPAGDDPIFALLRVFWPMLEKLFRSEHME--------NG-----NLSTAACRALSLAIQ-----SSGQH------FVT 723 (755)
Q Consensus 668 ~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~--------~~-----~v~e~~~~~~~~~~~-----~l~~~------~~~ 723 (755)
.+|..+.+..+||-+..+... +.+ +. ....+.|+++|+.+- .++.. ...
T Consensus 705 ------g~~f~~~~~~i~~~~l~~y~~-~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~ 777 (1073)
T 3gjx_A 705 ------GHPFVIQLGRIYLDMLNVYKC-LSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAEN 777 (1073)
T ss_dssp ------CGGGHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred ------chhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 366788888888866665441 211 11 133467888885553 33433 557
Q ss_pred hHHHHHHHHHHHHhhc---CCccceeeeccccc
Q 004414 724 LLPQVLDCLSTNFVSF---QNHECYIRTGKSFF 753 (755)
Q Consensus 724 ~l~~~~~~l~~~f~~~---~~~s~~l~~~s~~~ 753 (755)
++|++++.++.-|..+ .++|++||+.+.++
T Consensus 778 ~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv 810 (1073)
T 3gjx_A 778 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIV 810 (1073)
T ss_dssp TSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccHHHHHHHHHHH
Confidence 8999999999999984 27899999998764
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.7e-66 Score=633.06 Aligned_cols=698 Identities=21% Similarity=0.348 Sum_probs=549.2
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChH
Q 004414 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (755)
Q Consensus 5 ~~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~ 84 (755)
..++|.++++++|.++|++.|++|++||++||++|++|.+|..||... .+.++|||||++|+++|+++|+.++++
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~-----~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPD-----KVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTT-----SCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC-----CchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 477899999998888899999999999999999999999999999754 357999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccC---CCchhHHHHHHHhhhhhh
Q 004414 85 AKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQS---QDNGNMAVLEMLTVLPEE 159 (755)
Q Consensus 85 ~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~--~W~~~i~~li~~~~~~~~---~~~~~~~lL~iL~~l~EE 159 (755)
++..||+.|++++..+..+++.|++|+|.+++.++.+.. .||++++++++.+++..+ ++.....++++|+.++||
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee 176 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEE 176 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHH
Confidence 999999999999988765789999999999999998853 799999999998865111 234678999999999999
Q ss_pred cccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcc
Q 004414 160 VIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAA 239 (755)
Q Consensus 160 ~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~ 239 (755)
+.+.+ .+..+|..+.+.+....+.|+.++.+++....+ +..+...+++|+.+|++.+ .+ ....
T Consensus 177 ~~~~~-----~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~------~~~~~~~~l~~l~~wi~~~----~~--~~~~ 239 (963)
T 2x19_B 177 FQTSR-----LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSS------PSCVRQKVLKCFSSWVQLE----VP--LQDC 239 (963)
T ss_dssp HTTCC-----C---------CCSGGGHHHHHHHHHHHHSCTTC------CHHHHHHHHHHHHHHHTSS----CC--GGGT
T ss_pred Hhccc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHHHHcCC----CC--cccc
Confidence 86432 244667777777788899999999999876432 1248899999999999843 22 2245
Q ss_pred cchHHHHHhhcCCCCcHHHHHHHHHHHhhcCC-----ChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHH
Q 004414 240 HPLLNFVFNSLQVQSSFDVAIEVLVELVGRHE-----GLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (755)
Q Consensus 240 ~~ll~~~~~~L~~~~~~~~a~~~l~eii~~~~-----~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~ 314 (755)
+++++.+|+++.+++.++.|++|+.+++..+. ..+..+++.++.+.+.+. .+..++|.+.++++|++++.+++.
T Consensus 240 ~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~~~~~~~ 318 (963)
T 2x19_B 240 EALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLR-QAVQNGDMETSHGICRIAVALGEN 318 (963)
T ss_dssp HHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHH-HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHH-HHHHCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999998653 133456666666544433 244567889999999999999999
Q ss_pred hhHHHHhc---ChhHHHHHHHHHhcccCCC---CCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHH
Q 004414 315 APSLIVEA---SPEALALADALLSCVAFPS---EDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLD 388 (755)
Q Consensus 315 ~~~~l~~~---~~~~~~ll~~ll~~~~~p~---~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~ 388 (755)
+...+.++ ++.+..++++++.++.+|| .|++++..+++||+.+.+.+...+.+. ++.....++|++.++++
T Consensus 319 ~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~---~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 319 HSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEK---QAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHHHHHH
Confidence 99988753 3567799999999999863 256789999999999998654443211 13456678899999999
Q ss_pred HHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHh---hcCCCCCCChhhhHHHHHHHH
Q 004414 389 ALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGS---WGSANVPIPWKEVETKLFALN 465 (755)
Q Consensus 389 ~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~---~~~~~~~~~W~~~EA~L~~l~ 465 (755)
+++.+|.||+++..++|+.|++++|++||++++|++.+++.+.|.+ ++..+++.+ ......+.+|+.+||++|+++
T Consensus 396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~ 474 (963)
T 2x19_B 396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQ 474 (963)
T ss_dssp HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 9999999987743234555666789999999999999999988854 455444332 111113468999999999999
Q ss_pred hhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccCchHH
Q 004414 466 VVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSN 545 (755)
Q Consensus 466 ~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~v~~ 545 (755)
++++++..+.... ++.+++.+..+++ +++ .+|.++ |+++|+|++|+..||+++++++++++.++++|.|+.
T Consensus 475 ~i~~~~~~~~~~~-l~~l~~~l~~l~~-~~~------~vr~~~-~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~~V~~ 545 (963)
T 2x19_B 475 SIAETIDVNYSDV-VPGLIGLIPRISI-SNV------QLADTV-MFTIGALSEWLADHPVMINSVLPLVLHALGNPELSV 545 (963)
T ss_dssp HHTTSCCSSCCSH-HHHHHHHGGGSCC-CSH------HHHHHH-HHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCGGGHH
T ss_pred HHHhhcCchhhHH-HHHHHHHHHhCCC-CcH------HHHHHH-HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCchHHH
Confidence 9999987644322 4555555444443 232 367776 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCchHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHH
Q 004414 546 ACASALRKICEDASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIG 624 (755)
Q Consensus 546 ~Aa~al~~l~~~c~~~l~~~~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~ 624 (755)
+||.||.+||++|++.+. | +.+.+++ +...+.+..++.+.+..+++++|.++.++|.++ ..+++..+++|+...++
T Consensus 546 ~A~~al~~l~~~~~~~l~-p-~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~-~~~~~~~l~~~l~~~l~ 622 (963)
T 2x19_B 546 SSVSTLKKICRECKYDLP-P-YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE-ILKNLHSLISPYIQQLE 622 (963)
T ss_dssp HHHHHHHHHHHHTGGGCT-T-THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-h-hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999885 4 5665554 444444445678899999999999999998443 47999999999999999
Q ss_pred hhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCC------------CCCCchHHHHHHHHHHHHHHHH
Q 004414 625 KLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN------------PAGDDPIFALLRVFWPMLEKLF 692 (755)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~------------~~~~~p~~~~~~~~~~~l~~i~ 692 (755)
++.++.. ++.. .......+++|+.+++.+....+.. ...++|+..+.+++||++..++
T Consensus 623 ~~~~~~~------~~~~----~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 692 (963)
T 2x19_B 623 KLAEEIP------NPSN----KLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL 692 (963)
T ss_dssp HHHSSCS------CHHH----HHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC------CHHH----HHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 9865431 2211 1233456777777777776432110 1246889999999999999999
Q ss_pred HhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhhcCCccceeeeccccc
Q 004414 693 RSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTGKSFF 753 (755)
Q Consensus 693 ~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~~~~~~s~~l~~~s~~~ 753 (755)
+. |..+.++.|.+|.++++++.++|+++.||+|++++.++..|..+ +++|+|++.+.++
T Consensus 693 ~~-~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~l~l~~~li 751 (963)
T 2x19_B 693 SK-WLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI-PQASALDLTRQLV 751 (963)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS-CCHHHHHHHHHHH
T ss_pred Hh-ccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcC-CccHHHHHHHHHH
Confidence 84 88889999999999999999999999999999999999999986 8899999887664
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=8.3e-56 Score=540.84 Aligned_cols=681 Identities=15% Similarity=0.175 Sum_probs=495.3
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHH
Q 004414 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (755)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~ 85 (755)
.+++.++++++|+ |+++.|++|+++|++||++|++|.+|..+|.+.. +.++|||||++|+++|+++|..+++++
T Consensus 15 ~~~l~~~l~~~~~-p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~-----~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 15 IALLDQVVSTFYQ-GSGVQQKQAQEILTKFQDNPDAWQKADQILQFST-----NPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCS-----CHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHHHHhC-CChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 5679999999996 5677899999999999999999999999997643 479999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 004414 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (755)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~~la~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (755)
+..||+.|++++.....+ ++.|++|+|.++|.++.+. + .||++++++++.+++ ++......+.+|+.++
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~---~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHcc---ChHHHHHHHHHHHHHH
Confidence 999999999999875433 3789999999999999884 4 699999999999863 3445788999999999
Q ss_pred hhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 004414 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (755)
Q Consensus 158 EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~ 237 (755)
||+.+.+.. .++..+|..+.+.+....+.++.++.+++.... +.+++..+|+|+.+|+. |+|.+.+
T Consensus 166 eev~~~~~~--~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~-------~~~~~~~aL~~l~~~l~-----wi~~~~~ 231 (1049)
T 3m1i_C 166 EEVFDFSAE--QMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS-------SSSLIVATLESLLRYLH-----WIPYRYI 231 (1049)
T ss_dssp HHHHTSCTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred HHHHHhcch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHh-----hCCHHHH
Confidence 999753221 255677777778888889999999999998642 35689999999999988 6777766
Q ss_pred cccchHHHHH-hhcCCCCcHHHHHHHHHHHhhcCCC-----hhH---HHHHhhhh------------hHHHhhhhhhcCC
Q 004414 238 AAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHEG-----LPQ---ALLCRVPF------------LKELLLLPALTDG 296 (755)
Q Consensus 238 ~~~~ll~~~~-~~L~~~~~~~~a~~~l~eii~~~~~-----~~~---~l~~~~~~------------l~~~~~~~~~~~~ 296 (755)
..+++++.++ ..+.+++++.+|++|++++++.+.+ +.. .+++.++. +...+. ...++
T Consensus 232 ~~~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~--~~~~~ 309 (1049)
T 3m1i_C 232 YETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NANGN 309 (1049)
T ss_dssp HSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH--HTCTT
T ss_pred hhhhHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhc--cCCcc
Confidence 6788999999 4567888999999999999997532 122 23333333 112221 12355
Q ss_pred CHHHHhHHHHHHHHHHHHhhHHHHhcC---hhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhh
Q 004414 297 DEKVIGGLACLMSEIGQAAPSLIVEAS---PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK 373 (755)
Q Consensus 297 d~e~~~~l~~l~~~l~e~~~~~l~~~~---~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~ 373 (755)
|.+.++++|++|+++++.+...+.+.+ +....++++++.++.++ |++++..+++||+.+.++++.. +
T Consensus 310 d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l~~~--------~ 379 (1049)
T 3m1i_C 310 DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYE--------P 379 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHS--------T
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhc--------h
Confidence 677889999999999999998887632 24567899999999996 6799999999999999975321 1
Q ss_pred hhhhhhHHHHHHHHHHHHHHhccCCCCCCCC-CC------CCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHhhc
Q 004414 374 HVEDMFFSVFSALLDALLLRAQVDESSFNDD-GM------VDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWG 446 (755)
Q Consensus 374 ~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~-~~------~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~ 446 (755)
.....+++++.+|+++++.||+||+|..+.+ ++ .++++|...+|+.++|++..++.+.+ ..++..+.+.+..
T Consensus 380 ~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~ 458 (1049)
T 3m1i_C 380 LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLAR 458 (1049)
T ss_dssp TCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHH
Confidence 3456788999999999999999987643211 11 01122223567789999999987654 4456655544321
Q ss_pred C-CCCCCChhhhHHHHHHHHhhhhhccccC-CccchHHHHHHHHHhccC-----chhhhhhHHHHHHhHHHHHHHhhHHH
Q 004414 447 S-ANVPIPWKEVETKLFALNVVSEVVLQEG-QAFDFSVIMQLVAVLSAS-----RSEELKGFMHIVYRSLADVIGSYSKW 519 (755)
Q Consensus 447 ~-~~~~~~W~~~EA~L~~l~~iae~~~~~~-~~~~l~~i~~ll~~l~~~-----~~~~~~~~~~v~~~t~~~~ig~y~~~ 519 (755)
. .+.+.+|+.+||++|+++++++++.... +.. ++.+++.+..+++. +++ .++.+ +|+++|+|++|
T Consensus 459 ~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~-l~~v~~~l~~l~~~~~~~~~~~------~v~~~-~~~~lgry~~~ 530 (1049)
T 3m1i_C 459 QIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRF-VVTVIKDLLDLTVKKRGKDNKA------VVASD-IMYVVGQYPRF 530 (1049)
T ss_dssp HHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHH-HHHHHHHHHHHTTSSCSHHHHH------HHHHH-HHHHHHHCHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHH-HHHHHHHHHHHHhhhccccchH------HHHHH-HHHHHHHHHHH
Confidence 1 1135689999999999999998876431 111 46677766666653 222 23434 47999999999
Q ss_pred HHhCccchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhcccC-------CCchHHHHHHHHHHHHhcCCChhhHHH
Q 004414 520 ISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALID-------EPSNLEILMWIGEALEKRHLPLEDEEE 590 (755)
Q Consensus 520 ~~~~p~~l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~l~-------~~~~~~~l~~~~~~l~~~~l~~~~~~~ 590 (755)
+..||+++++++++++.++.+ |.|+.+||+||.+||++|++.+. .| +++.+++.+..+. ..++.++...
T Consensus 531 ~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p-~~~~il~~l~~~~-~~~~~~~~~~ 608 (1049)
T 3m1i_C 531 LKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP-FIQTIIRDIQKTT-ADLQPQQVHT 608 (1049)
T ss_dssp HHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC-HHHHHHHTHHHHH-TTSCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc-HHHHHHHHHHHHH-HhCCHHHHHH
Confidence 999999999999999999987 56999999999999999998763 13 5665554443332 3467888999
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCC-CCCCCChhHHHHHHHHHHHHHhhhhhcccccccC--
Q 004414 591 VVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNH-SLIHNPATYTQILSSATRGLYRMGTVFSHLPVPL-- 667 (755)
Q Consensus 591 l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~-- 667 (755)
++||+|.++++.|+.+...+++..+++|+++++++++.+...+ +...++.. .......+.+++.+.+.+....
T Consensus 609 ~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~l~~~l~~~~~~~~~l~~~f~p 684 (1049)
T 3m1i_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSET----VKIIANIIKTNVAVCTSMGADFYP 684 (1049)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHH----HHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHH----HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999998644458999999999999999987643211 11112211 1111222222222222221110
Q ss_pred --------------------------CCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhh
Q 004414 668 --------------------------PTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF 721 (755)
Q Consensus 668 --------------------------~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~ 721 (755)
.......+|....++.+||.+..+++. |..+.+ +++..+
T Consensus 685 ~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~-~~~~~~--------------~l~~~~ 749 (1049)
T 3m1i_C 685 QLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVET-YISKAR--------------NLDDVV 749 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHH-HHHHCS--------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHH-HHHhCC--------------CHHHHH
Confidence 000012355555556666666555552 443322 233446
Q ss_pred HhhHHHHHHHHHHHHhhcCCccc-----eeeeccccc
Q 004414 722 VTLLPQVLDCLSTNFVSFQNHEC-----YIRTGKSFF 753 (755)
Q Consensus 722 ~~~l~~~~~~l~~~f~~~~~~s~-----~l~~~s~~~ 753 (755)
.||+|++++.++..|.. .+++ +|++++.++
T Consensus 750 ~~~~~~~l~~ll~~~~~--~~~~~~~~~~l~l~~~ii 784 (1049)
T 3m1i_C 750 KVLVEPLLNAVLEDYMN--NVPDARDAEVLNCMTTVV 784 (1049)
T ss_dssp HHTHHHHHHHHHHHHHH--SCGGGCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCcccccHHHHHHHHHHH
Confidence 79999999999999976 3556 788776543
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=2.3e-54 Score=529.55 Aligned_cols=704 Identities=15% Similarity=0.145 Sum_probs=505.1
Q ss_pred HHHHHHHHHHhccC-CChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChH
Q 004414 6 QIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (755)
Q Consensus 6 ~~~v~~av~~ly~~-~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~ 84 (755)
.+++.++++++|++ +|++.|++|+++|++||++|++|..+..+|... +.+.++||||+++|+++|+++|..++++
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~----s~~~~vR~~A~~~Lk~~I~~~W~~l~~e 85 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEK----TQVAIVRHFGLQILEHVVKFRWNGMSRL 85 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTST----TSCHHHHHHHHHHHHHHHHHSGGGSCHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 45688999998874 588899999999999999999999999988622 2467999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhh
Q 004414 85 AKDALLNALLVAAKRFSS----GPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPE 158 (755)
Q Consensus 85 ~~~~Lr~~Ll~~l~~~~~----~~~~v~~kL~~~la~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~E 158 (755)
++..||+.+++++..... .++.|++|+|.+++.++.+. + .||++++++++.+++ ++......+.+|..|+|
T Consensus 86 ~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 86 EKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ---GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 999999999999986532 56899999999999999885 4 699999999998875 34567889999999999
Q ss_pred hcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccC---------CCC--CcchhhhHHHHHHHHHHHHHhc
Q 004414 159 EVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFD---------GGV--PVQLHDRNRKILRCLLSWVRAG 227 (755)
Q Consensus 159 E~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~---------~~~--~~~~~~l~~~~l~c~~sWi~~~ 227 (755)
|+.+.+. +...+|+.+.+.+..+.+.++.++.+++....+ .+. ..++..+...+|+|+.+|+.
T Consensus 163 ev~~~~~----~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~-- 236 (1204)
T 3a6p_A 163 DVVTFQT----LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID-- 236 (1204)
T ss_dssp HHHTSCC----SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred HHccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh--
Confidence 9865432 455777788888888899999998888765210 000 00234588999999999998
Q ss_pred cccccCcchhccc--chHHHHHhhcCCCCcHHHHHHHHHHHhhcCCChhH--HHHHhhh--hhHHHhhhhh-------hc
Q 004414 228 CFTEISQGSLAAH--PLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQ--ALLCRVP--FLKELLLLPA-------LT 294 (755)
Q Consensus 228 ~~~~~~~~~~~~~--~ll~~~~~~L~~~~~~~~a~~~l~eii~~~~~~~~--~l~~~~~--~l~~~~~~~~-------~~ 294 (755)
|+|.+.+..+ .+++.+|..+.+++++.+|++|++++++++++... .++..+. .+...+. .+ +.
T Consensus 237 ---Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~-~~~~~~~~~~~ 312 (1204)
T 3a6p_A 237 ---WVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILS-AAQTADGGGLV 312 (1204)
T ss_dssp ---TSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHH-HHHTCCCCSCC
T ss_pred ---ccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHH-HhhcCCCCCCc
Confidence 7787665443 49999999999999999999999999998764211 1111110 0112221 11 13
Q ss_pred CCCHHHHhHHHHHHHHHHHHhhHHHHh-----cChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhh
Q 004414 295 DGDEKVIGGLACLMSEIGQAAPSLIVE-----ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIA 369 (755)
Q Consensus 295 ~~d~e~~~~l~~l~~~l~e~~~~~l~~-----~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~ 369 (755)
++|.++++.+|++++++|+.+...+.+ .++.+..++++++.++.|| +.+|+..+++||+.+.+... .
T Consensus 313 e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~--~~~vs~~~l~fW~~ll~~~~-~----- 384 (1204)
T 3a6p_A 313 EKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP--SQFLRSSTQMTWGALFRHEI-L----- 384 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHSCTT-T-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc--cHHhHHHHHHHHHHHHhccc-c-----
Confidence 345688999999999999987776653 3456789999999999998 68999999999998776531 1
Q ss_pred hhhhhhhhhhHHHHHHHHHHH---HHHhccCCCCCC-------C--CCCCCCCchHHHHHHHHhHHHHHHHHhcCcHH--
Q 004414 370 KNKKHVEDMFFSVFSALLDAL---LLRAQVDESSFN-------D--DGMVDLPDGLVQFRMNLVELLVDICQLLRSAT-- 435 (755)
Q Consensus 370 ~~~~~~~~~~~~~~~~Ll~~l---~~k~~~p~~~~~-------~--~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~-- 435 (755)
...+.+.+++.+|++++ +.||+||+++.. + ++++|.++.|.+||++++|+++.++.+.+...
T Consensus 385 ----~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~ 460 (1204)
T 3a6p_A 385 ----SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQ 460 (1204)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 11235889999999999 889999986431 1 11112225799999999999999998764321
Q ss_pred -HHHHHHHHhhcC--------------------CCCCCChhhhHHHHHHHHhhhhhccc--cCCccc---hHHHHHHHHH
Q 004414 436 -FIQKVFFGSWGS--------------------ANVPIPWKEVETKLFALNVVSEVVLQ--EGQAFD---FSVIMQLVAV 489 (755)
Q Consensus 436 -~l~~~~~~~~~~--------------------~~~~~~W~~~EA~L~~l~~iae~~~~--~~~~~~---l~~i~~ll~~ 489 (755)
+...+.+.+... ...+..|...||..+.+.++++++.. +.+... .+.+++.+..
T Consensus 461 ~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~ 540 (1204)
T 3a6p_A 461 MAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN 540 (1204)
T ss_dssp HHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh
Confidence 222232222210 01134699999999999999988842 111110 2334444333
Q ss_pred h-ccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhccc--------------CchHHHHHHHHHHH
Q 004414 490 L-SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--------------AVSSNACASALRKI 554 (755)
Q Consensus 490 l-~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~--------------p~v~~~Aa~al~~l 554 (755)
+ +++|. +|++. +.++|+|++|+..||++++++|++++.++.+ ++++.+||.+|.+|
T Consensus 541 ~~~~~p~--------l~~~~-i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L 611 (1204)
T 3a6p_A 541 FDTKDPL--------ILSCV-LTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKM 611 (1204)
T ss_dssp CCCSCHH--------HHHHH-HHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCChH--------HHHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHH
Confidence 3 23443 56776 4999999999999999999999999988765 14889999999999
Q ss_pred HHHhhcccCCCchHHHHHHHHHH-HHhcC-CChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHh-----hh
Q 004414 555 CEDASALIDEPSNLEILMWIGEA-LEKRH-LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGK-----LI 627 (755)
Q Consensus 555 ~~~c~~~l~~~~~~~~l~~~~~~-l~~~~-l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~-----~~ 627 (755)
|++|+..+. | +.+.|.+.+.. +..+. ++.+++..+++|++.+...+++++....+++.+++|+++++++ .+
T Consensus 612 ~~~~~~~L~-p-~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~~~ 689 (1204)
T 3a6p_A 612 CRDYPQLVL-P-NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRVL 689 (1204)
T ss_dssp HHHCHHHHG-G-GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHhhHHHH-H-HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHHhh
Confidence 999999986 3 77776665554 44566 8899999999999999666666665578899999999999885 22
Q ss_pred ccCC----------C--CCCCCCChhH-----HHHHHHHHHHHHhhh---------hh-cccccccCCCCCCCCchHHHH
Q 004414 628 DGDN----------N--HSLIHNPATY-----TQILSSATRGLYRMG---------TV-FSHLPVPLPTNPAGDDPIFAL 680 (755)
Q Consensus 628 ~~~~----------~--~~~~~~~~~~-----~~~l~~~~~~l~~L~---------~~-f~~l~~~~~~~~~~~~p~~~~ 680 (755)
+... . .....++... ...+..+...+++.. ++ |-....+. ..+...||+.+.
T Consensus 690 s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~~-~~p~~~~p~~~~ 768 (1204)
T 3a6p_A 690 SDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTSS-GNPIFRNPCTEQ 768 (1204)
T ss_dssp HCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECSS-CCEEECCTTHHH
T ss_pred cCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceeccCCC-CCccccCchHHH
Confidence 2210 0 0001111110 011222333344320 11 21111111 112346899999
Q ss_pred HHHHHHHHHHHHHhhhc--cchHHHHHHH-------------HHHHHHHHHHhhh--hHhhHHHHHHHHHHHHhhcCCcc
Q 004414 681 LRVFWPMLEKLFRSEHM--ENGNLSTAAC-------------RALSLAIQSSGQH--FVTLLPQVLDCLSTNFVSFQNHE 743 (755)
Q Consensus 681 ~~~~~~~l~~i~~~~~~--~~~~v~e~~~-------------~~~~~~~~~l~~~--~~~~l~~~~~~l~~~f~~~~~~s 743 (755)
+..+||.+.+++.+ +. .++++.+.+| ++...++..-... -.|..+...+.+...|... +.+
T Consensus 769 i~~ilP~ll~Ll~~-~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-re~ 846 (1204)
T 3a6p_A 769 ILKLLDNLLALIRT-HNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERMQRFFSTL-YEN 846 (1204)
T ss_dssp HHHHHHHHHHHHHH-HHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCCCCCCTTCCCSCCCHHHHHHHHHHHH-HHH
T ss_pred HHHHhHHHHHHHHH-HHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCcccccccccCCCcCcHHHHHHHHHHH-HHH
Confidence 99999999999985 44 5789998888 6666554431011 1133356778888877776 999
Q ss_pred ceeeecccc
Q 004414 744 CYIRTGKSF 752 (755)
Q Consensus 744 ~~l~~~s~~ 752 (755)
||++++++.
T Consensus 847 ~y~~lg~~~ 855 (1204)
T 3a6p_A 847 CFHILGKAG 855 (1204)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998863
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=3e-33 Score=338.89 Aligned_cols=623 Identities=12% Similarity=0.079 Sum_probs=390.5
Q ss_pred chHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccC---
Q 004414 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY--- 79 (755)
Q Consensus 3 ~~~~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~--- 79 (755)
|++.+++.++++... ++|++.| |+++|++++++|+.|..+..++.+.+ .+.++|++|+.+||++|+++|.
T Consensus 1 M~d~~~l~~~L~~~~-spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~----~~~~vR~~A~i~lkn~i~~~w~~~~ 73 (960)
T 1wa5_C 1 MSDLETVAKFLAESV-IASTAKT--SERNLRQLETQDGFGLTLLHVIASTN----LPLSTRLAGALFFKNFIKRKWVDEN 73 (960)
T ss_dssp CCHHHHHHHHHHHTT-SGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred CCcHHHHHHHHHHhc-CCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 446788999998855 5677777 99999999999999999999997653 3579999999999999999997
Q ss_pred ---CCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh-c-ccCchHHHHHHHhhcccCCCchhHHHHHHHh
Q 004414 80 ---YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (755)
Q Consensus 80 ---~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~ 154 (755)
.++++++..||+.|++.+.. .++.||+++|.+++.++.+. + .||++++++++.++++ ++......|.+|.
T Consensus 74 ~~~~l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~--~~~~~~~aL~~l~ 148 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND--DMVTNKGVLTVAH 148 (960)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS--CTTHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 79999999999999999875 45889999999999998764 4 6999999999998763 4556677888888
Q ss_pred hhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHh---hhcccCCCCC-cchhhhHHHHHHHHHHHHHhcccc
Q 004414 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQ---SDKRFDGGVP-VQLHDRNRKILRCLLSWVRAGCFT 230 (755)
Q Consensus 155 ~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~---l~~~~~~~~~-~~~~~l~~~~l~c~~sWi~~~~~~ 230 (755)
.+.+..... . .+++.|.++..-+....+.+++++... +....++... ....+....+++++.+-..+
T Consensus 149 ~i~~~~~~~--~---~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~---- 219 (960)
T 1wa5_C 149 SIFKRWRPL--F---RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ---- 219 (960)
T ss_dssp HHHGGGTTS--C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS----
T ss_pred HHHHHHHHh--h---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 888765210 0 133445555555666677777776554 4332110000 00011223345555432111
Q ss_pred ccCcchhcccchHHHHHhhcCCCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCC----HHHHhHHHH
Q 004414 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGD----EKVIGGLAC 306 (755)
Q Consensus 231 ~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d----~e~~~~l~~ 306 (755)
.+|.. + ... ...-+..+..++..... .......+++ ....+.+++
T Consensus 220 ~~~~~-~-~~~--------------~~~~~~~~~~~l~~~~p---------------~~~~d~d~~~~~~~~~vk~~~~~ 268 (960)
T 1wa5_C 220 DIPEF-F-EDN--------------IQVGMGIFHKYLSYSNP---------------LLEDPDETEHASVLIKVKSSIQE 268 (960)
T ss_dssp CCCHH-H-HHT--------------HHHHHHHHHHHHSCCSC---------------CCC------CCCHHHHHHHHHHH
T ss_pred cchHH-H-HHH--------------HHHHHHHHHHHHcCCCC---------------cccCCcccccccHHHHHHHHHHH
Confidence 11110 0 000 00001111111111000 0000000000 123457888
Q ss_pred HHHHHHHHhhHHHHhcChhHHHHHHHHHhcccC---CCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhH--H
Q 004414 307 LMSEIGQAAPSLIVEASPEALALADALLSCVAF---PSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFF--S 381 (755)
Q Consensus 307 l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~---p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~--~ 381 (755)
.++.+.+.+...+.. ....+++.++..... ...++++...+++||..+.+. + .....++ +
T Consensus 269 ~l~~l~~~~~~~f~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~----~--------~~~~~~~~~~ 333 (960)
T 1wa5_C 269 LVQLYTTRYEDVFGP---MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI----P--------KYFEIFNNES 333 (960)
T ss_dssp HHHHHHHHCHHHHHH---HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS----H--------HHHGGGCSHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc----H--------hHHHHHcCch
Confidence 899888888777642 334555555554431 112457888999999987653 1 1223444 8
Q ss_pred HHHHHH-HHHHHHhccCCCCCCCCCCCC---------CCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHH----hhc-
Q 004414 382 VFSALL-DALLLRAQVDESSFNDDGMVD---------LPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFG----SWG- 446 (755)
Q Consensus 382 ~~~~Ll-~~l~~k~~~p~~~~~~~~~~d---------~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~----~~~- 446 (755)
++.+++ .+++..|+|++++.. .|+.| +++++...|+..++++..++...| +.++..++.. +..
T Consensus 334 ~l~~li~~~i~~~m~~~~~d~e-~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~ 411 (960)
T 1wa5_C 334 AMNNITEQIILPNVTLREEDVE-LFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQY 411 (960)
T ss_dssp HHHHHHHHTHHHHHSCCGGGTT-TTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhcCCCHHHHH-HHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHh
Confidence 899999 789999999765332 23222 134556778899999999988877 4344433332 211
Q ss_pred CCCCCCChhhhHHHHHHHHhhhhhcc--ccC-----CccchHHH-HH-HHHHhccCc---hhhhhhHHHHHHhHHHHHHH
Q 004414 447 SANVPIPWKEVETKLFALNVVSEVVL--QEG-----QAFDFSVI-MQ-LVAVLSASR---SEELKGFMHIVYRSLADVIG 514 (755)
Q Consensus 447 ~~~~~~~W~~~EA~L~~l~~iae~~~--~~~-----~~~~l~~i-~~-ll~~l~~~~---~~~~~~~~~v~~~t~~~~ig 514 (755)
..+.+.+|+.+||+++++++++++.. ... ....+..+ .+ +++.+. +| ++ .+|+++ ||++|
T Consensus 412 ~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~-~~~~~~p------~vr~~a-~~~lg 483 (960)
T 1wa5_C 412 MSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT-SNNIPHI------ILRVDA-IKYIY 483 (960)
T ss_dssp HC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH-CSSCSCH------HHHHHH-HHHHH
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhc-CCCCCCc------eehHHH-HHHHH
Confidence 01224679999999999999987532 101 00013332 33 334443 23 33 378877 69999
Q ss_pred hhHHHHHhCccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHH-----------hhcccCCCchHHHHHHHHHHHHhc
Q 004414 515 SYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED-----------ASALIDEPSNLEILMWIGEALEKR 581 (755)
Q Consensus 515 ~y~~~~~~~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~-----------c~~~l~~~~~~~~l~~~~~~l~~~ 581 (755)
+|++|+ +|+++.++++.+++++.++. |+.+||+||.+||+. ++..+. |+..+.+..+...+...
T Consensus 484 ~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~-p~l~~ll~~L~~ll~~~ 560 (960)
T 1wa5_C 484 TFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS-NSTEILLKNLIALILKH 560 (960)
T ss_dssp HTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT-TTHHHHHHHHHHHHHTT
T ss_pred HHHhhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhh-hhHHHHHHHHHHHHHhc
Confidence 999997 68899999999999998855 899999999999984 244453 53334444555544332
Q ss_pred C---CChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhh
Q 004414 582 H---LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGT 658 (755)
Q Consensus 582 ~---l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~ 658 (755)
. .+..+...++++++.++...+.+ . .+++..+++.++..+++..+.. .++.. ....+++++.
T Consensus 561 ~~~~~~~~~~e~l~~al~~vv~~~~~~-~-~p~~~~l~~~L~~~l~~~~~~~------~~~~~-------~~~~~e~l~~ 625 (960)
T 1wa5_C 561 GSSPEKLAENEFLMRSIFRVLQTSEDS-I-QPLFPQLLAQFIEIVTIMAKNP------SNPRF-------THYTFESIGA 625 (960)
T ss_dssp CCCHHHHTSCHHHHHHHHHHHHHHTTT-T-GGGHHHHHHHHHHHHHHHTTSC------CCHHH-------HHHHHHHHHH
T ss_pred cCCCCcccccHHHHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHHHHhCC------CCcHH-------HHHHHHHHHH
Confidence 0 11225679999999999887654 2 5678888888888877764422 12211 1234566777
Q ss_pred hcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHH
Q 004414 659 VFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLS 733 (755)
Q Consensus 659 ~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~ 733 (755)
+.+.. .+.+...+.+.+||++..++++ . ..++.+.++.++..++... ..+.|+++.+++.+.
T Consensus 626 l~~~~---------~~~~~~~~~~~~~p~~~~iL~~-~--~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 626 ILNYT---------QRQNLPLLVDSMMPTFLTVFSE-D--IQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLL 687 (960)
T ss_dssp HHHTS---------CGGGHHHHHHHHHHHHHHHHHT-T--CTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHT
T ss_pred HHhcC---------CcchHHHHHHHHHHHHHHHHHh-h--hHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHc
Confidence 66641 1245677889999999999984 3 3456777777777766654 444455554444444
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=5.7e-33 Score=333.07 Aligned_cols=600 Identities=14% Similarity=0.136 Sum_probs=409.8
Q ss_pred hHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCCh
Q 004414 4 DLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (755)
Q Consensus 4 ~~~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~ 83 (755)
+..+++.++++..+ ++|++.|++|+++|++++++|+.|.++..++.... +.+.++|++|+..||+.|+++|..+++
T Consensus 10 ~~~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~---~~~~~vR~~a~~~Lkn~i~~~w~~~~~ 85 (852)
T 4fdd_A 10 QGLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLK---SEDEPTRSLSGLILKNNVKAHFQNFPN 85 (852)
T ss_dssp HHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHTTTSGGGCCH
T ss_pred hhHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHHHccCCCCH
Confidence 45667888888776 57999999999999999999999999999998632 246799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcc
Q 004414 84 AAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVI 161 (755)
Q Consensus 84 ~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~ 161 (755)
+.+..||+.+++.+. ..++.||++++.+++.++.... .||+.++.+++.+++. ++......+..|..+.++..
T Consensus 86 ~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~--~~~~r~~al~~L~~i~~~~~ 160 (852)
T 4fdd_A 86 GVTDFIKSECLNNIG---DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE--DYNTCEGAFGALQKICEDSA 160 (852)
T ss_dssp HHHHHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS--SHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhH
Confidence 999999999999864 4567899999999999987653 7999999999999763 34456677777777777653
Q ss_pred cccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccc
Q 004414 162 DSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHP 241 (755)
Q Consensus 162 ~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ 241 (755)
.. -.+ ..+......++..+.+.+.+ ++..++..+++|+..++... +..
T Consensus 161 ~~---------~~~----~~~~~~~~~il~~l~~~l~~--------~~~~vR~~A~~aL~~~~~~~-----~~~------ 208 (852)
T 4fdd_A 161 EI---------LDS----DVLDRPLNIMIPKFLQFFKH--------SSPKIRSHAVACVNQFIISR-----TQA------ 208 (852)
T ss_dssp TH---------HHH----CSSSSCHHHHHHHHTTTTTC--------SSHHHHHHHHHHHHTTTTTT-----CHH------
T ss_pred HH---------hch----hhhcchHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHhcc-----cHH------
Confidence 11 000 00111234455555555543 34578888888887665421 100
Q ss_pred hHHHHHhhcCCCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHh
Q 004414 242 LLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVE 321 (755)
Q Consensus 242 ll~~~~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~ 321 (755)
+. .....+++.+. ....++|.+..+..++.+..+++.+...+..
T Consensus 209 ~~----------------------------~~~~~~l~~l~--------~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 209 LM----------------------------LHIDSFIENLF--------ALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HH----------------------------TSHHHHHHHHH--------HHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HH----------------------------HHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 00 00111122111 1334567778888889999998888777653
Q ss_pred cChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCC
Q 004414 322 ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSF 401 (755)
Q Consensus 322 ~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~ 401 (755)
+...+++.++.+..++ +.+|...+++||..+.+.. ......+|++.++++.++.+|.|++++.
T Consensus 253 ---~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~------------~~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 253 ---HMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQP------------ICKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp ---GHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTST------------THHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred ---HHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcch------------hHHHHHHHHHHHHHHHHHHHcCCcHhHH
Confidence 3557889999998886 6789999999999987641 1123456778899999999998865311
Q ss_pred C---CC--CCCCCCch--HHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhcccc
Q 004414 402 N---DD--GMVDLPDG--LVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (755)
Q Consensus 402 ~---~~--~~~d~~d~--f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~ 474 (755)
. .+ +|++++|+ ....|+..++++..++...|.. ++..++..+... ..+.+|+.++++++++++++++..+.
T Consensus 316 ~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~-l~~~~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKEL-LFHHEWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp HHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcchHH
Confidence 0 01 11111111 1234777888888888877753 444444332210 12457999999999999999987642
Q ss_pred CCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh--CccchHHHHHHHHHhccc--CchHHHHHHH
Q 004414 475 GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQTNARPLLLFLAAGISE--AVSSNACASA 550 (755)
Q Consensus 475 ~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~--~p~~l~~~l~~l~~~l~~--p~v~~~Aa~a 550 (755)
-... ++.++..+....+++++ .||.++ ++++|+|++|+.. +..++.++++.++.++.+ ++++..|+.|
T Consensus 394 ~~~~-l~~~l~~l~~~l~d~~~------~Vr~~a-~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~a 465 (852)
T 4fdd_A 394 MIPY-LPELIPHLIQCLSDKKA------LVRSIT-CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSA 465 (852)
T ss_dssp HGGG-HHHHHHHHHHHTTCSSH------HHHHHH-HHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHcCCCCH------HHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2222 46666666666677765 378877 5999999999975 457899999999999975 5699999999
Q ss_pred HHHHHHHhhcccCCCchHHHH-HHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 004414 551 LRKICEDASALIDEPSNLEIL-MWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDG 629 (755)
Q Consensus 551 l~~l~~~c~~~l~~~~~~~~l-~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~ 629 (755)
+.++|+.|+..+. | |++.+ ..+...+... +.+....++++++.++..++..-...+++..++++++..+..+.+.
T Consensus 466 L~~l~~~~~~~l~-~-~l~~ll~~L~~~l~~~--~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~ 541 (852)
T 4fdd_A 466 FATLEEEACTELV-P-YLAYILDTLVFAFSKY--QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE 541 (852)
T ss_dssp HHHHHHHHGGGGG-G-GHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhhHhhH-h-HHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998864 4 55544 4444444333 4556667899999998766543222468888888888876654332
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhh-------------
Q 004414 630 DNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEH------------- 696 (755)
Q Consensus 630 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~------------- 696 (755)
. +. +. ..+.+++.+...++.. +.+.+..+++.+..++...+
T Consensus 542 ~--------~~-----~~---~~~~~l~~i~~~~g~~----------~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 542 D--------KD-----LF---PLLECLSSVATALQSG----------FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 595 (852)
T ss_dssp C--------TT-----HH---HHHHHHHHHHHHHGGG----------GHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred c--------HH-----HH---HHHHHHHHHHHHHhHh----------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 1 11 11 1244455554444421 22333333443333322100
Q ss_pred -ccchHHHHHHHHHHHHHHHHHhhhhHhhH--HHHHHHHHHHHh
Q 004414 697 -MENGNLSTAACRALSLAIQSSGQHFVTLL--PQVLDCLSTNFV 737 (755)
Q Consensus 697 -~~~~~v~e~~~~~~~~~~~~l~~~~~~~l--~~~~~~l~~~f~ 737 (755)
..+.++...++.+++.+++.+|.++.|++ +.+++.+...+.
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 639 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ 639 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTT
T ss_pred CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhC
Confidence 11466888899999999999999999998 888998888774
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=8.7e-30 Score=306.35 Aligned_cols=612 Identities=14% Similarity=0.120 Sum_probs=410.3
Q ss_pred HHHHHHHHHh-ccCCChHHHHHHHHHHHHHhcC--hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcc------
Q 004414 7 IKVAQAVHVL-NHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE------ 77 (755)
Q Consensus 7 ~~v~~av~~l-y~~~d~~~~~qA~~~L~~fq~s--~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~------ 77 (755)
.++.+++..+ + ++|++.|++|+++|++++++ |+.|..+.+++.+.+ .+.++|+||+++|+++|+++
T Consensus 4 ~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~----~~~~vR~~A~~~lk~~i~~~w~~~~~ 78 (861)
T 2bpt_A 4 AEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDEN----TKLEGRILAALTLKNELVSKDSVKTQ 78 (861)
T ss_dssp HHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTT----SCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred HHHHHHHHHccc-CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCC----CChHHHHHHHHHHHhhccCcChHHHH
Confidence 4699999997 6 67999999999999999987 999999999997653 35799999999999999876
Q ss_pred -----cCC-CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh-c--ccCchHHHHHHHhhcccCCCchhHH
Q 004414 78 -----GYY-LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMA 148 (755)
Q Consensus 78 -----~~~-l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~-~--~W~~~i~~li~~~~~~~~~~~~~~~ 148 (755)
|.. ++++.+..||+.|++.+. ..+..+|++++.+++.++... + .||++++.+++.+.+.. ++.....
T Consensus 79 ~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~-~~~~r~~ 154 (861)
T 2bpt_A 79 QFAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-PENVKRA 154 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-CHHHHHH
T ss_pred HHHHhHhhhCCHHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCC-CHHHHHH
Confidence 565 999999999999999875 356789999999999998774 4 69999999999987631 3455677
Q ss_pred HHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhcc
Q 004414 149 VLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGC 228 (755)
Q Consensus 149 lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~ 228 (755)
.+.++..+++++... . | .+....+.++..+.+.+.+.. ++..++..+++|+.+|+.+..
T Consensus 155 al~~l~~l~~~~~~~------~----~-----~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 155 SLLALGYMCESADPQ------S----Q-----ALVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHHTSSTT------S----S-----TTGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHcCChh------h----h-----HHHHHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHHHHHH
Confidence 889999999887421 0 0 123456677787777776531 145799999999999987531
Q ss_pred ccccCcchhcccchHHHHHhhcCCCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHH
Q 004414 229 FTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLM 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~ 308 (755)
. .+... .....+++.++..+ .+++.+.....++.+
T Consensus 214 ~-~~~~~-~~~~~ll~~l~~~~-------------------------------------------~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 214 N-NMERE-GERNYLMQVVCEAT-------------------------------------------QAEDIEVQAAAFGCL 248 (861)
T ss_dssp H-HHTSH-HHHHHHHHHHHHHH-------------------------------------------TCSCHHHHHHHHHHH
T ss_pred H-HccCh-hHHHHHHHHHHHHh-------------------------------------------cCCCHHHHHHHHHHH
Confidence 0 00000 00011222222222 233445555555566
Q ss_pred HHHHHHhhHHHHhcChhHH-HHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhh--hhhh-hhhhhHHHHH
Q 004414 309 SEIGQAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK--NKKH-VEDMFFSVFS 384 (755)
Q Consensus 309 ~~l~e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~--~~~~-~~~~~~~~~~ 384 (755)
..+++.+...+. +... .++++++.....+ +.++...+++||..+.+........... ..+. .....++++.
T Consensus 249 ~~l~~~~~~~~~---~~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (861)
T 2bpt_A 249 CKIMSKYYTFMK---PYMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIK 323 (861)
T ss_dssp HHHHHHHGGGCH---HHHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHH
Confidence 555555443222 1223 4666666666664 6789999999999988764211100000 0000 1123466778
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHH
Q 004414 385 ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFAL 464 (755)
Q Consensus 385 ~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l 464 (755)
.+++.++.+++.++++ + +++++ ..|+...+++..++..+|.. ++..++..+... ..+.+|+.+|++++++
T Consensus 324 ~il~~ll~~l~~~~~d---~----~d~~~-~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~-l~~~~~~~r~~a~~~l 393 (861)
T 2bpt_A 324 DVVPNLLNLLTRQNED---P----EDDDW-NVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQN-ITADNWRNREAAVMAF 393 (861)
T ss_dssp HHHHHHHHHTTCCCCC--------CCCCC-HHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHH-TTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc---c----ccccC-cHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHH-cCCCChhHHHHHHHHH
Confidence 8999999988765431 1 11222 56788888998888877743 344443332210 1246799999999999
Q ss_pred Hhhhhhcccc-CCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhC---ccchHHHHHHHHHhccc
Q 004414 465 NVVSEVVLQE-GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF---QTNARPLLLFLAAGISE 540 (755)
Q Consensus 465 ~~iae~~~~~-~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~---p~~l~~~l~~l~~~l~~ 540 (755)
++++++...+ -... ++.++..+.....++++ .+|.++ ++++|+|++++..+ +++++.+++.++.++.+
T Consensus 394 ~~i~~~~~~~~~~~~-l~~il~~l~~~l~d~~~------~vr~~a-~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~ 465 (861)
T 2bpt_A 394 GSIMDGPDKVQRTYY-VHQALPSILNLMNDQSL------QVKETT-AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD 465 (861)
T ss_dssp HHTSSSSCHHHHHHH-HHHHHHHHHHGGGCSCH------HHHHHH-HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHcCCCHHHHHHH-HHHHHHHHHHHcCCCcH------HHHHHH-HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc
Confidence 9999876421 1111 34444444444556654 377776 59999999999753 57899999999999986
Q ss_pred -CchHHHHHHHHHHHHHHhh----cccCCCchHHH-HHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHH
Q 004414 541 -AVSSNACASALRKICEDAS----ALIDEPSNLEI-LMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLAR 614 (755)
Q Consensus 541 -p~v~~~Aa~al~~l~~~c~----~~l~~~~~~~~-l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ 614 (755)
|+++..|+.++..+|+.|. ..+. | +++. +..+...+.....+.+.|..++++++.++...+.+- .+++..
T Consensus 466 ~~~v~~~a~~al~~l~~~~~~~~~~~l~-~-~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~--~~~~~~ 541 (861)
T 2bpt_A 466 HPKVATNCSWTIINLVEQLAEATPSPIY-N-FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV--AETSAS 541 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSSSCGGG-G-GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG--HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcccccchhhH-H-HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhh--HHHHHH
Confidence 5689999999999999986 3342 3 5544 444444443233335678899999999999988763 678999
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCh-hHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004414 615 LLSSSYEAIGKLIDGDNNHSLIHNPA-TYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR 693 (755)
Q Consensus 615 l~~p~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~ 693 (755)
++.+++..+...+..... ...++. .....++ ...+..|+.+.+.++.. +.+.+..++|.+..++.
T Consensus 542 l~~~l~~~l~~~~~~~~~--i~~~~~~~~~~~~~--~~~~~~l~~l~~~~~~~----------~~~~~~~l~~~l~~~l~ 607 (861)
T 2bpt_A 542 ISTFVMDKLGQTMSVDEN--QLTLEDAQSLQELQ--SNILTVLAAVIRKSPSS----------VEPVADMLMGLFFRLLE 607 (861)
T ss_dssp HHHHHHHHHHHHTTSCGG--GCCHHHHHHHHHHH--HHHHHHHHHHHHHCGGG----------TGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcc--cCChhhHHHHHHHH--HHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHHc
Confidence 999999999876432100 000000 0000011 12334455555554431 22345677888877776
Q ss_pred hhhccch-HHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHh
Q 004414 694 SEHMENG-NLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFV 737 (755)
Q Consensus 694 ~~~~~~~-~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~ 737 (755)
. . +. .+.+.++.++..++..+|.++.||++.+++.+...+.
T Consensus 608 ~-~--~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 649 (861)
T 2bpt_A 608 K-K--DSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN 649 (861)
T ss_dssp S-T--TGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred c-C--CCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 3 2 23 7899999999999999999999999999999999884
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.97 E-value=2.2e-26 Score=277.25 Aligned_cols=613 Identities=12% Similarity=0.096 Sum_probs=399.8
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcC--hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHh-----------
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ----------- 75 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~s--~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~----------- 75 (755)
+.+++..+. ++|++.|++|+++|++++++ |+.|..+..++.+.+ .+..+|++|+.+|++++.
T Consensus 3 l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~----~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (876)
T 1qgr_A 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPG----NSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp HHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCC----CCHHHHHHHHHHHHHhccccchHhHHHHH
Confidence 778888876 57999999999999999988 999999999997653 247999999999999985
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh---cccCchHHHHHHHhhcccCCCchhHHHHHH
Q 004414 76 NEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA---VEHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (755)
Q Consensus 76 ~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~---~~W~~~i~~li~~~~~~~~~~~~~~~lL~i 152 (755)
++|..++++.+..||+.|++.+.. .+..+ ++++.+++.++... ..||+.++.++..+.+...++......+..
T Consensus 78 ~~w~~l~~~~~~~ik~~ll~~l~~---~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~ 153 (876)
T 1qgr_A 78 QRWLAIDANARREVKNYVLHTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTT---CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHhCC---CcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 568999999999999999998753 33446 99999999998764 369999999999997631034456778888
Q ss_pred HhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhcccccc
Q 004414 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (755)
Q Consensus 153 L~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~ 232 (755)
|..+++++.. +.+....+.++..+.+.+.... ++..++..+++|+..|+.+... .+
T Consensus 154 l~~l~~~~~~-----------------~~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~a~~~l~~~~~~~~~-~~ 209 (876)
T 1qgr_A 154 IGYICQDIDP-----------------EQLQDKSNEILTAIIQGMRKEE------PSNNVKLAATNALLNSLEFTKA-NF 209 (876)
T ss_dssp HHHHHHHSCH-----------------HHHGGGHHHHHHHHHHHHSTTC------SCHHHHHHHHHHHHHHGGGCHH-HH
T ss_pred HHHHHHhcCH-----------------hhHHhHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHHHHHHH-HH
Confidence 8888887520 1145567788888888776531 1356899999999999874210 00
Q ss_pred CcchhcccchHHHHHhhcCCCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHH
Q 004414 233 SQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIG 312 (755)
Q Consensus 233 ~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~ 312 (755)
.. ......+++.+++.+ .++|.+.....++.+..++
T Consensus 210 ~~-~~~~~~il~~l~~~~-------------------------------------------~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 210 DK-ESERHFIMQVVCEAT-------------------------------------------QCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp TS-HHHHHHHHHHHHHHT-------------------------------------------TCSSHHHHHHHHHHHHHHH
T ss_pred Hh-HHHHHHHHHHHHHHc-------------------------------------------CCCCHHHHHHHHHHHHHHH
Confidence 00 000011222222222 2334445555566666665
Q ss_pred HHhhHHHHhcChhHH-HHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhh---hhh----hhhhhhhHHHHH
Q 004414 313 QAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIA---KNK----KHVEDMFFSVFS 384 (755)
Q Consensus 313 e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~---~~~----~~~~~~~~~~~~ 384 (755)
+.+...+.. ... .+++.++.+...+ +.++...+++||..+.+.......+.. ... .......++.+.
T Consensus 246 ~~~~~~~~~---~~~~~l~~~~~~~~~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (876)
T 1qgr_A 246 SLYYQYMET---YMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (876)
T ss_dssp HHSGGGCHH---HHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHH
T ss_pred HHhHHHHHH---HHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHH
Confidence 555433321 222 4667777776664 568999999999999875321100000 000 011123455678
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHH
Q 004414 385 ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFAL 464 (755)
Q Consensus 385 ~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l 464 (755)
.+++.++..+...+++ + +++++ ..|+...+++..++..+|.. ++..++..+.. ...+.+|+.++++++++
T Consensus 321 ~ll~~ll~~l~~~~~d---~----~~~~~-~~r~~a~~~l~~l~~~~~~~-~~~~~l~~l~~-~l~~~~~~~r~~a~~~l 390 (876)
T 1qgr_A 321 YLVPILTQTLTKQDEN---D----DDDDW-NPCKAAGVCLMLLATCCEDD-IVPHVLPFIKE-HIKNPDWRYRDAAVMAF 390 (876)
T ss_dssp HHHHHHHHHTTCCCSS---C----CTTCC-CHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHH-HTTCSSHHHHHHHHHHH
T ss_pred HHhHHHHHHhhccccc---c----ccccc-HHHHHHHHHHHHHHHHCcHh-hHHHHHHHHHH-HccCCChHHHHHHHHHH
Confidence 8888888888643221 0 11122 45778888888888777643 34444443221 11246799999999999
Q ss_pred HhhhhhccccC-CccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh---CccchHHHHHHHHHhccc
Q 004414 465 NVVSEVVLQEG-QAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGISE 540 (755)
Q Consensus 465 ~~iae~~~~~~-~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~---~p~~l~~~l~~l~~~l~~ 540 (755)
+.+++++.++. ... ++.++..+....+++++ .+|..+ ++++|+|++++.. ++.+++.+++.++..+.+
T Consensus 391 ~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~------~vr~~a-~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~ 462 (876)
T 1qgr_A 391 GCILEGPEPSQLKPL-VIQAMPTLIELMKDPSV------VVRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA 462 (876)
T ss_dssp HHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSH------HHHHHH-HHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS
T ss_pred HHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCH------HHHHHH-HHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC
Confidence 99998765211 111 34444444444456654 377776 5999999999875 567899999999999987
Q ss_pred -CchHHHHHHHHHHHHHHhh--------------cccCCCchHHHHH-HHHHHHHhcCC-ChhhHHHHHHHHHHHHccCC
Q 004414 541 -AVSSNACASALRKICEDAS--------------ALIDEPSNLEILM-WIGEALEKRHL-PLEDEEEVVGAISLILGSVS 603 (755)
Q Consensus 541 -p~v~~~Aa~al~~l~~~c~--------------~~l~~~~~~~~l~-~~~~~l~~~~l-~~~~~~~l~eai~~vi~~~p 603 (755)
++++..|+.++..+++.|. ..+. | +.+.++ .+...+..... +...+..++++++.++...+
T Consensus 463 ~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 463 EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS-S-SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST-T-THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhh-H-hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 4589999999999999986 2243 4 455444 44444322211 23457789999999999988
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHH
Q 004414 604 NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRV 683 (755)
Q Consensus 604 ~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~ 683 (755)
.+. .+++..++++++..+...+..........++..+. .++ ...+..++.+.+.++. ..+.+++..
T Consensus 541 ~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~-~~~--~~~~~~l~~l~~~~~~---------~~~~~~~~~ 606 (876)
T 1qgr_A 541 KDC--YPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN-DLQ--SLLCATLQNVLRKVQH---------QDALQISDV 606 (876)
T ss_dssp STT--HHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHH-HHH--HHHHHHHHHHHTTSCH---------HHHHTTHHH
T ss_pred hhh--HHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHH-HHH--HHHHHHHHHHHHHhCh---------hhhhHHHHH
Confidence 753 57899999999999988643211100001111110 011 1122334444443330 113344567
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhh
Q 004414 684 FWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVS 738 (755)
Q Consensus 684 ~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~~ 738 (755)
++|.+..++.. ..+...+.+.++.+++.++..+|..+.||++.+++.+...+..
T Consensus 607 l~~~l~~~l~~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 660 (876)
T 1qgr_A 607 VMASLLRMFQS-TAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN 660 (876)
T ss_dssp HHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 77777777653 2112478999999999999999999999999999999887765
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.93 E-value=2.7e-23 Score=231.03 Aligned_cols=432 Identities=12% Similarity=0.060 Sum_probs=295.9
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhc--ChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcc---------
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQ--TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE--------- 77 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~--s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~--------- 77 (755)
+.+++..++ ++|++.|++|+++|+++++ .|+.|..+..++.+.+ .+.++|++|+.+|++.++++
T Consensus 3 l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~----~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPG----NSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 677888876 5799999999999999998 4999999999998753 35799999999999999876
Q ss_pred --cCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh-c--ccCchHHHHHHHhhcccCCCchhHHHHHH
Q 004414 78 --GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (755)
Q Consensus 78 --~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~-~--~W~~~i~~li~~~~~~~~~~~~~~~lL~i 152 (755)
|..++++.+..||+.|++.+.. .+..+ +++|.+++.++... + .||+.++.++..+++...++......+.+
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~---~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTC---CCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCC---CCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 5789999999999999998753 34556 99999999998774 3 69999999999997631134566788999
Q ss_pred HhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhcccccc
Q 004414 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (755)
Q Consensus 153 L~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~ 232 (755)
|..++++... . . +....+.++..+.+.+.+.. ++..++..+++|+.+|+.+.
T Consensus 154 l~~l~~~~~~-~-----~-----------~~~~~~~ll~~l~~~l~~~~------~~~~vr~~a~~~l~~~~~~~----- 205 (462)
T 1ibr_B 154 IGYICQDIDP-E-----Q-----------LQDKSNEILTAIIQGMRKEE------PSNNVKLAATNALLNSLEFT----- 205 (462)
T ss_dssp HHHHHHHSCG-G-----G-----------TGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHTTTT-----
T ss_pred HHHHHHhCCc-h-----h-----------hHhHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHHHHHH-----
Confidence 9999988621 0 0 23345677888888776531 13579999999999998642
Q ss_pred CcchhcccchHHHHHhhcCCCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHH
Q 004414 233 SQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIG 312 (755)
Q Consensus 233 ~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~ 312 (755)
.. ... +.. +...+++.+. ....+.|.+.....++.+..++
T Consensus 206 ~~-~~~--------------~~~-----------------~~~~l~~~l~--------~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 206 KA-NFD--------------KES-----------------ERHFIMQVVC--------EATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp HH-HHT--------------SHH-----------------HHHHHHHHHH--------HHTTCSSHHHHHHHHHHHHHHH
T ss_pred HH-hhh--------------hhH-----------------HHHHHHHHHH--------HhcCCCCHHHHHHHHHHHHHHH
Confidence 10 000 000 0000111111 1234556777778888888888
Q ss_pred HHhhHHHHhcChhHH-HHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhh----hhh---hhhhhhhHHHHH
Q 004414 313 QAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIA----KNK---KHVEDMFFSVFS 384 (755)
Q Consensus 313 e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~----~~~---~~~~~~~~~~~~ 384 (755)
+.+...+... .. .+++.++.++... +.++...+++||..+.+.......... ..+ .......++++.
T Consensus 246 ~~~~~~~~~~---~~~~l~~~~~~~~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (462)
T 1ibr_B 246 SLYYQYMETY---MGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (462)
T ss_dssp HHCGGGCTTT---TTTTHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence 8776554432 22 5666777776664 568999999999999876321100000 000 011223456678
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHH
Q 004414 385 ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFAL 464 (755)
Q Consensus 385 ~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l 464 (755)
.+++.+++.+.-.+++. + +++ ...|....+++..++..+|. .++..++..+.. ...+.+|+.++|+++++
T Consensus 321 ~l~p~l~~~l~~~d~d~---~----~~~-~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~-~l~~~~~~~r~aal~~l 390 (462)
T 1ibr_B 321 YLVPILTQTLTKQDEND---D----DDD-WNPCKAAGVCLMLLATCCED-DIVPHVLPFIKE-HIKNPDWRYRDAAVMAF 390 (462)
T ss_dssp HHHHHHHHHTTCCCSSC---C----TTC-CSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHH-HTTCSSHHHHHHHHHHH
T ss_pred hccHHHHHHHHhccccc---c----ccc-chHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH-HhcCCChHHHHHHHHHH
Confidence 88888888775322110 1 111 14588888999999998884 355555443321 11346899999999999
Q ss_pred HhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh---CccchHHHHHHHHHhcc
Q 004414 465 NVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGIS 539 (755)
Q Consensus 465 ~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~---~p~~l~~~l~~l~~~l~ 539 (755)
+++++++..+.-...++.++..+....+++++ .||.++ ++++|+|++|+.. ++.+++++++.++++|.
T Consensus 391 ~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~------~Vr~~a-~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 391 GCILEGPEPSQLKPLVIQAMPTLIELMKDPSV------VVRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCH------HHHHHH-HHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCH------HHHHHH-HHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 99999875321101146677766666666664 378877 5999999999986 46799999999988764
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.55 E-value=1.9e-11 Score=152.08 Aligned_cols=569 Identities=12% Similarity=0.098 Sum_probs=322.5
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCh----------HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHh
Q 004414 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTD----------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ 75 (755)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~----------~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~ 75 (755)
..++.+.+..+- ++|++.|.+|.+.|.+.-+.+ .--......|.+ .+..+|..|+..|..-..
T Consensus 5 ~~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d------~~~~vR~~A~~~L~~l~~ 77 (1230)
T 1u6g_C 5 SYHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED------KNGEVQNLAVKCLGPLVS 77 (1230)
T ss_dssp CHHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC------SSHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHH
Confidence 356888888864 689999999988888765432 112233344432 346999999999988765
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc-----------ccCchHHHHHHHhhcccCCCc
Q 004414 76 NEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-----------EHGKPIEKLFYSLQNLQSQDN 144 (755)
Q Consensus 76 ~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~-----------~W~~~i~~li~~~~~~~~~~~ 144 (755)
. ++++....+++.|+..+. ..+..+|...+.+|+.++-... .|+..++.++..+... .++.
T Consensus 78 ~----~~~~~~~~i~~~Ll~~l~---d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~ 149 (1230)
T 1u6g_C 78 K----VKEYQVETIVDTLCTNML---SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVS 149 (1230)
T ss_dssp T----SCHHHHHHHHHHHHHHTT---CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHH
T ss_pred h----CCHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchH
Confidence 3 566777777777777654 3445688888889988876553 2888899999888631 1334
Q ss_pred hhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHH
Q 004414 145 GNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWV 224 (755)
Q Consensus 145 ~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi 224 (755)
.....++++..+.+..+.. +. .+.+.++..+.+.+.+ ++..++..+++|+...+
T Consensus 150 ~~~~al~~l~~~~~~~~~~------l~------------~~~~~ll~~l~~~L~~--------~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 150 VQLEALDIMADMLSRQGGL------LV------------NFHPSILTCLLPQLTS--------PRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp HHHHHHHHHHHHHHHTCSS------CT------------TTHHHHHHHHGGGGGC--------SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHhH------HH------------HHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHHHH
Confidence 5566677777777655321 11 2335566666666654 23568899999998877
Q ss_pred HhccccccCcchhcccchHHHHHhhcCC---CCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHH
Q 004414 225 RAGCFTEISQGSLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVI 301 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~ll~~~~~~L~~---~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~ 301 (755)
... +... ...+++.+++.|.+ +..+..+++++
T Consensus 204 ~~~-----~~~~--~~~~l~~l~~~L~~~~~~~~r~~a~~~l-------------------------------------- 238 (1230)
T 1u6g_C 204 MSC-----GNIV--FVDLIEHLLSELSKNDSMSTTRTYIQCI-------------------------------------- 238 (1230)
T ss_dssp TTC-----------CTTHHHHHHHHHHHTCSSCSCTTHHHHH--------------------------------------
T ss_pred Hhc-----CHHH--HHHHHHHHHHHhccCCchhHHHHHHHHH--------------------------------------
Confidence 642 1111 12234433333321 12222333333
Q ss_pred hHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHH
Q 004414 302 GGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFS 381 (755)
Q Consensus 302 ~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~ 381 (755)
..++......+. +....+++.++..+..+ +.++.+.++..|..+.... .+.+.|
T Consensus 239 -------~~l~~~~~~~~~---~~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~l~~~~--------------~~~~~~ 292 (1230)
T 1u6g_C 239 -------AAISRQAGHRIG---EYLEKIIPLVVKFCNVD--DDELREYCIQAFESFVRRC--------------PKEVYP 292 (1230)
T ss_dssp -------HHHHHHSSGGGT---TSCTTHHHHHHHHHSSC--CTTTHHHHHHHHHHHHHCT--------------TCCCHH
T ss_pred -------HHHHHHhHHHHH---HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHC--------------hHHHHH
Confidence 333322211111 12234666666666654 5677777777777666532 123577
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHH
Q 004414 382 VFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKL 461 (755)
Q Consensus 382 ~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L 461 (755)
++..+++.+++.++++++...+ .+.+..+++.+. + +.+..-. .-.... ......|.-++++.
T Consensus 293 ~l~~li~~ll~~l~~d~~~~~~-~d~~~~~~~~~~----~----------~~~~~~~-~~~~~~--~~~d~~~~vR~~A~ 354 (1230)
T 1u6g_C 293 HVSTIINICLKYLTYDPNYNYD-DEDEDENAMDAD----G----------GDDDDQG-SDDEYS--DDDDMSWKVRRAAA 354 (1230)
T ss_dssp HHHHHHHHHTTCCCCC------------------------------------------------------CTTHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCCCCCc-cccccccccccc----c----------cccchhh-cccccc--cccccCHHHHHHHH
Confidence 8899999999999886542000 000000001100 0 0000000 000000 01235699999999
Q ss_pred HHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHh-------------------
Q 004414 462 FALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA------------------- 522 (755)
Q Consensus 462 ~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~------------------- 522 (755)
-++..++......-... ++.++..+.....+++. .+|..+ ..+++....-...
T Consensus 355 ~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~d~~~------~Vr~~a-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (1230)
T 1u6g_C 355 KCLDAVVSTRHEMLPEF-YKTVSPALISRFKEREE------NVKADV-FHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 426 (1230)
T ss_dssp HHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSSS------HHHHHH-HHHHHHHHHHHCCC------------CCCHHH
T ss_pred HHHHHHHHhchhHHHHH-HHHHHHHHHHHcCCCch------HHHHHH-HHHHHHHHHHhccccccccCccccccccchHH
Confidence 99999887432100000 12222222222233332 255444 3555544432210
Q ss_pred -CccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHH
Q 004414 523 -FQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLI 598 (755)
Q Consensus 523 -~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~v 598 (755)
-..+++.+++.+.+.+.++. ++..++.++..++..|+..+. + +++.+.. +...+.......+.+...+..++.+
T Consensus 427 ~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~-~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~ 504 (1230)
T 1u6g_C 427 MLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT-Q-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVI 504 (1230)
T ss_dssp HHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG-G-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH-H-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 02366778888888888754 788899999999999877663 3 5554443 3444322211235677888888888
Q ss_pred HccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHH
Q 004414 599 LGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIF 678 (755)
Q Consensus 599 i~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~ 678 (755)
+...+.+.. .+++..++.+++..+ ... ++.. ... .+..++.+.+.+.... ......+.
T Consensus 505 ~~~~~~~~~-~~~l~~llp~L~~~l----~d~-------~~~v----~~~---al~~l~~l~~~~~~~~---~~~~~~~~ 562 (1230)
T 1u6g_C 505 LCNHSPQVF-HPHVQALVPPVVACV----GDP-------FYKI----TSE---ALLVTQQLVKVIRPLD---QPSSFDAT 562 (1230)
T ss_dssp HHSSCGGGG-HHHHTTTHHHHHHHH----TCS-------SHHH----HHH---HHHHHHHHHHHHCCSS---SCCCCCCH
T ss_pred HHhCCHHHH-HhHHHHHHHHHHHHH----ccc-------chHH----HHH---HHHHHHHHHHHhcCcc---cccccchH
Confidence 877666543 567777776666543 211 1100 011 2333333333333210 01122345
Q ss_pred HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHh
Q 004414 679 ALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFV 737 (755)
Q Consensus 679 ~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~ 737 (755)
++++.++|.+...+.. ...+.++.+.+..+++.++...|..+.+++|.+++.+.....
T Consensus 563 ~~~~~ll~~ll~~l~~-~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~ 620 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKA-ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLK 620 (1230)
T ss_dssp HHHHHHHHHHHHHHSC-SSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhc
Confidence 6778888888877752 445678999999999999999999999999999998887654
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.35 E-value=1.4e-08 Score=121.32 Aligned_cols=437 Identities=12% Similarity=0.086 Sum_probs=264.4
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCCC--cHHHHHHHHHHHhhcCCCh---------hHHH
Q 004414 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQS--SFDVAIEVLVELVGRHEGL---------PQAL 277 (755)
Q Consensus 209 ~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~--~~~~a~~~l~eii~~~~~~---------~~~l 277 (755)
+..++..+-.|+..-.+.. +. -....+++.+++.+.+++ .++.++.++..+.....+. .+.+
T Consensus 103 ~~~vr~~~a~~i~~ia~~~-----~~--~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~i 175 (852)
T 4fdd_A 103 SPLIRATVGILITTIASKG-----EL--QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 175 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHT-----TT--TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc-----Cc--cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHH
Confidence 3568888888887776642 11 124668999999998754 5788999988887755432 2233
Q ss_pred HHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHH
Q 004414 278 LCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (755)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l 357 (755)
++.+. ....+.+.+.....++.+..+.......+. .....+++.++.+.+.+ +.++...++..+..+
T Consensus 176 l~~l~--------~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~---~~~~~~l~~l~~~~~d~--~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 176 IPKFL--------QFFKHSSPKIRSHAVACVNQFIISRTQALM---LHIDSFIENLFALAGDE--EPEVRKNVCRALVML 242 (852)
T ss_dssp HHHHT--------TTTTCSSHHHHHHHHHHHHTTTTTTCHHHH---TSHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHH
T ss_pred HHHHH--------HHhcCCCHHHHHHHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence 33322 234455666655555555544332222111 12336777777777765 567888888877766
Q ss_pred HHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHH------hc
Q 004414 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQ------LL 431 (755)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~------~l 431 (755)
.+.. ...+.+++..+++.++..++-+ | .+.|....+++..++. .+
T Consensus 243 ~~~~--------------~~~~~~~l~~l~~~l~~~~~~~----------~-----~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 243 LEVR--------------MDRLLPHMHNIVEYMLQRTQDQ----------D-----ENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHC--------------HHHHGGGHHHHHHHHHHHHTCS----------S-----HHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHhC--------------HHHHHHHHHHHHHHHHHHccCC----------c-----HHHHHHHHHHHHHHhcchhHHHHH
Confidence 6642 1234455666777776654310 0 2235555555555432 11
Q ss_pred CcH--HHHHHHHHHhh----------cCC--C-CC----CChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhcc
Q 004414 432 RSA--TFIQKVFFGSW----------GSA--N-VP----IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSA 492 (755)
Q Consensus 432 ~~~--~~l~~~~~~~~----------~~~--~-~~----~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~ 492 (755)
.+. ..+..++..+. .+. . .. .+|.-+.++.-+++.+++...+ . . ++.++..+....+
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~-~-~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--E-L-LPHILPLLKELLF 369 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--G-G-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--H-H-HHHHHHHHHHHhc
Confidence 211 12333333321 110 0 00 5699999999999999987752 2 2 5777777766666
Q ss_pred CchhhhhhHHHHHHhHHHHHHHhhHHHHHhC-ccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCchHH
Q 004414 493 SRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLE 569 (755)
Q Consensus 493 ~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~-p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~ 569 (755)
++.. .+|.++ ++++|.+++..... ..+++.+++.+++.+.|+. |+..|+.++.++|+.+......+ +.+
T Consensus 370 ~~~~------~~R~aa-~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-~~~ 441 (852)
T 4fdd_A 370 HHEW------VVKESG-ILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLK 441 (852)
T ss_dssp CSSH------HHHHHH-HHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT-THH
T ss_pred CCCH------HHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH-HHH
Confidence 6554 367776 49999998754321 2478999999999998854 89999999999999887643323 444
Q ss_pred H-HHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHH
Q 004414 570 I-LMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSS 648 (755)
Q Consensus 570 ~-l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 648 (755)
. +..+...+... +...|.....+++.++...+.+ . .+++..++. .|..+++... .. .+.
T Consensus 442 ~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~~~~-l-~~~l~~ll~----~L~~~l~~~~-------~~----~~~- 501 (852)
T 4fdd_A 442 PLMTELLKRILDS--NKRVQEAACSAFATLEEEACTE-L-VPYLAYILD----TLVFAFSKYQ-------HK----NLL- 501 (852)
T ss_dssp HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHGGG-G-GGGHHHHHH----HHHHHHHHCC-------HH----HHH-
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhhHh-h-HhHHHHHHH----HHHHHHHHhC-------hH----HHH-
Confidence 3 44444444222 5678999999999998765543 1 344444444 4444443221 00 011
Q ss_pred HHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHhhhhHhhHHH
Q 004414 649 ATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMEN-GNLSTAACRALSLAIQSSGQHFVTLLPQ 727 (755)
Q Consensus 649 ~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~-~~v~e~~~~~~~~~~~~l~~~~~~~l~~ 727 (755)
..++.++.++...+.... . ..+++.++|.+...... ..++ .++ ..++.++..++..+|..+.||+++
T Consensus 502 --~~~~ai~~l~~~~~~~~~-----~---~~~~~~l~p~l~~~~~~-l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~ 569 (852)
T 4fdd_A 502 --ILYDAIGTLADSVGHHLN-----K---PEYIQMLMPPLIQKWNM-LKDEDKDL-FPLLECLSSVATALQSGFLPYCEP 569 (852)
T ss_dssp --HHHHHHHHHHHHHGGGGC-----C---HHHHHHHHHHHHHHHHH-SCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred --HHHHHHHHHHHHhhhhhc-----c---HHHHHHHHHHHHHHHHh-cccccHHH-HHHHHHHHHHHHHHhHhHHHHHHH
Confidence 123444555544443210 1 24568888988877653 4333 444 589999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 004414 728 VLDCLSTNFVS 738 (755)
Q Consensus 728 ~~~~l~~~f~~ 738 (755)
+++.++..+..
T Consensus 570 i~~~~~~~l~~ 580 (852)
T 4fdd_A 570 VYQRCVNLVQK 580 (852)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877666543
No 15
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.18 E-value=6.9e-08 Score=109.93 Aligned_cols=561 Identities=12% Similarity=0.050 Sum_probs=312.0
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhc---ChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCC
Q 004414 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (755)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~---s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~ 82 (755)
...+...+..+- ++|+..|..|-+-|..+-. ....|.-....|....+ .+.++|..++..|..-... +.
T Consensus 9 ~~~i~~l~~~l~-s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d---~~~~vr~~~~~~L~~~~~~----~~ 80 (588)
T 1b3u_A 9 LYPIAVLIDELR-NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIY---DEDEVLLALAEQLGTFTTL----VG 80 (588)
T ss_dssp SHHHHHHHHHTT-CSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCC---CCHHHHHHHHHHHTTCSGG----GT
T ss_pred cCcHHHHHHHhh-cccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHhc----cC
Confidence 456777887775 6799999999888876543 23446544444433221 3468999999988632221 11
Q ss_pred hHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHhcc---cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhh
Q 004414 83 SAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPE 158 (755)
Q Consensus 83 ~~~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~---W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~E 158 (755)
... ..+.++..+.... .....||...+.+|..++-..+. |+..++-+.....+. +.........++..+.+
T Consensus 81 ~~~---~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~--~~~~R~~a~~~l~~~~~ 155 (588)
T 1b3u_A 81 GPE---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD--WFTSRTSACGLFSVCYP 155 (588)
T ss_dssp SGG---GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS--SHHHHHHHGGGHHHHTT
T ss_pred cHH---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHH
Confidence 111 1122333333322 34577999999999988765541 333333333333221 22223344444444443
Q ss_pred hcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhc
Q 004414 159 EVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA 238 (755)
Q Consensus 159 E~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~ 238 (755)
.+ +.. ..+.++..+.+.+.+ +++.++..+.+++..+.... +.+ ..
T Consensus 156 ~~----------~~~-----------~~~~l~~~l~~l~~d--------~~~~VR~~a~~~l~~l~~~~-----~~~-~~ 200 (588)
T 1b3u_A 156 RV----------SSA-----------VKAELRQYFRNLCSD--------DTPMVRRAAASKLGEFAKVL-----ELD-NV 200 (588)
T ss_dssp TS----------CHH-----------HHHHHHHHHHHHHTC--------SCHHHHHHHHHHHHHHHHTS-----CHH-HH
T ss_pred hc----------CHH-----------HHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHh-----cHH-hH
Confidence 32 111 123445555555543 34679999999999988742 221 22
Q ss_pred ccchHHHHHhhcCCCC--cHHHHHHHHHHHhhcCCC--hhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHH
Q 004414 239 AHPLLNFVFNSLQVQS--SFDVAIEVLVELVGRHEG--LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (755)
Q Consensus 239 ~~~ll~~~~~~L~~~~--~~~~a~~~l~eii~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~ 314 (755)
...+++.+...+.+++ .+..|++++..+.....+ ....+++.+. ....+.+.......+..+..+++.
T Consensus 201 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~--------~~~~d~~~~vR~~a~~~l~~l~~~ 272 (588)
T 1b3u_A 201 KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR--------QAAEDKSWRVRYMVADKFTELQKA 272 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHH--------HHHTCSSHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------HHccCCCHHHHHHHHHHHHHHHHH
Confidence 3567888888887654 677889998887765432 1222232222 133455666666777777766654
Q ss_pred hhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 004414 315 APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRA 394 (755)
Q Consensus 315 ~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~ 394 (755)
...-. ....+++.++.++..+ +.+|...+...+..+.+.+ ..+ . ...++...+++.+...+
T Consensus 273 ~~~~~-----~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~---~~~------~---~~~~~~~~l~p~l~~~l 333 (588)
T 1b3u_A 273 VGPEI-----TKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENL---SAD------C---RENVIMSQILPCIKELV 333 (588)
T ss_dssp HCHHH-----HHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTS---CTT------T---HHHHHHHTHHHHHHHHH
T ss_pred hCccc-----chhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHh---Chh------h---hhhHHHHHHHHHHHHHh
Confidence 31110 1124667777777765 5678888887777776643 110 0 00122333444443322
Q ss_pred ccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHHHHHHH---HHhhcCCCCCCChhhhHHHHHHHHhhhhhc
Q 004414 395 QVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVF---FGSWGSANVPIPWKEVETKLFALNVVSEVV 471 (755)
Q Consensus 395 ~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~---~~~~~~~~~~~~W~~~EA~L~~l~~iae~~ 471 (755)
. | .+ ...|..+...+..++..+|.+.....+. ..+.. ..++.-+++++-+++.+.+.+
T Consensus 334 ~---d---~~---------~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~----d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 334 S---D---AN---------QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK----DECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp T---C---SC---------HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT----CSCHHHHHHHHTTCHHHHHHS
T ss_pred c---C---CC---------HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHHHHhc
Confidence 1 1 00 2457777667776666667553322222 22222 345778888888888887765
Q ss_pred cccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccCc--hHHHHHH
Q 004414 472 LQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACAS 549 (755)
Q Consensus 472 ~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~--v~~~Aa~ 549 (755)
..+. . .+.++..+..+.+++.. .+|..+ +.+++.++..+... .+.+.+++.+++.+.++. |+..|+.
T Consensus 395 ~~~~--~-~~~~lp~l~~~~~d~~~------~vr~~~-~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~~ 463 (588)
T 1b3u_A 395 GIRQ--L-SQSLLPAIVELAEDAKW------RVRLAI-IEYMPLLAGQLGVE-FFDEKLNSLCMAWLVDHVYAIREAATS 463 (588)
T ss_dssp CHHH--H-HHHHHHHHHHHHTCSSH------HHHHHH-HHHHHHHHHHHCGG-GCCHHHHHHHHHGGGCSSHHHHHHHHH
T ss_pred CHHH--H-HHHHHHHHHHHhcCCCc------hHHHHH-HHHHHHHHHHcCHH-HHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4321 1 23344444444455543 367766 59999998766432 245678888888888754 8999999
Q ss_pred HHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 004414 550 ALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDG 629 (755)
Q Consensus 550 al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~ 629 (755)
++..+++.++... +.+.+......+. ..-+...|...+++++.+...++.+ .+...++.+++ +.+..
T Consensus 464 ~l~~l~~~~~~~~----~~~~llp~l~~~~-~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~----~~l~d 530 (588)
T 1b3u_A 464 NLKKLVEKFGKEW----AHATIIPKVLAMS-GDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVL----RMAGD 530 (588)
T ss_dssp HHHHHHHHHCHHH----HHHHTHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHH----HGGGC
T ss_pred HHHHHHHHhCchh----HHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHH----hhCCC
Confidence 9999998876532 2222222222221 1224567888899999988764432 23344443333 33332
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHH
Q 004414 630 DNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRA 709 (755)
Q Consensus 630 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~ 709 (755)
. ++... ...+..|+.++..++. + . .-..+.|.+..+.. -.+.+|.+.++.+
T Consensus 531 ~-------~~~Vr-------~~a~~~l~~l~~~~~~---------~-~--~~~~~~p~l~~l~~---d~d~~vr~~a~~a 581 (588)
T 1b3u_A 531 P-------VANVR-------FNVAKSLQKIGPILDN---------S-T--LQSEVKPILEKLTQ---DQDVDVKYFAQEA 581 (588)
T ss_dssp S-------CHHHH-------HHHHHHHHHHGGGSCH---------H-H--HHHHHHHHHHHHTT---CSSHHHHHHHHHH
T ss_pred C-------CchHH-------HHHHHHHHHHHHHhch---------h-h--hHHHHHHHHHHHcC---CCchhHHHHHHHH
Confidence 1 11111 1233445555544432 1 1 12567788877544 2578999999988
Q ss_pred HHHH
Q 004414 710 LSLA 713 (755)
Q Consensus 710 ~~~~ 713 (755)
++.+
T Consensus 582 l~~l 585 (588)
T 1b3u_A 582 LTVL 585 (588)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8753
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.18 E-value=6.1e-07 Score=107.19 Aligned_cols=591 Identities=9% Similarity=0.040 Sum_probs=301.2
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcC--h-HHHHH-HHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccC-C
Q 004414 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQT--D-AAWEI-ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY-Y 80 (755)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s--~-~aw~~-~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~-~ 80 (755)
.+.+.+.+-.....+++..|+++-.-|..+-+. | ..|.- ...|+....+ ..+.++|..|..+|..-... +. +
T Consensus 93 ~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~--~~~~~~r~~al~~l~~l~~~-~~~~ 169 (861)
T 2bpt_A 93 KNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGA--EQPENVKRASLLALGYMCES-ADPQ 169 (861)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTST--TSCHHHHHHHHHHHHHHHHT-SSTT
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHc-CChh
Confidence 344554444444566788888888888776443 3 25643 2333322221 01468899998888766553 32 1
Q ss_pred C--ChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh----cc---cCchHHHHHHHhhcccCCCchhHHHHH
Q 004414 81 L--QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA----VE---HGKPIEKLFYSLQNLQSQDNGNMAVLE 151 (755)
Q Consensus 81 l--~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~----~~---W~~~i~~li~~~~~~~~~~~~~~~lL~ 151 (755)
. -......|...+++.+... ..+..||.....++..+.-.. .. |+..++.+...+.+. ++......++
T Consensus 170 ~~~~~~~~~~ll~~l~~~l~~~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~~r~~a~~ 246 (861)
T 2bpt_A 170 SQALVSSSNNILIAIVQGAQST-ETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE--DIEVQAAAFG 246 (861)
T ss_dssp SSTTGGGHHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS--CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC--CHHHHHHHHH
Confidence 1 1233444444444443211 114668877777777653111 11 333444444444321 2233344455
Q ss_pred HHhhhhhhcccccccccCCCHHHHHHHHHHHHhchh-HHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhcccc
Q 004414 152 MLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTP-MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (755)
Q Consensus 152 iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~-~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~ 230 (755)
.|..+.+...+. + ..+.. .++.++...+.+ .+..++..+++++..-++...
T Consensus 247 ~l~~l~~~~~~~------~------------~~~l~~~l~~~~~~~~~~--------~~~~vr~~a~~~l~~l~~~~~-- 298 (861)
T 2bpt_A 247 CLCKIMSKYYTF------M------------KPYMEQALYALTIATMKS--------PNDKVASMTVEFWSTICEEEI-- 298 (861)
T ss_dssp HHHHHHHHHGGG------C------------HHHHHHTHHHHHHHHTTC--------SSHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHH------H------------HHHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHHHHHHHH--
Confidence 555554443210 1 11222 445555554443 234677777766555444210
Q ss_pred ccCcchhcccchHHHHHhhcCCCCcHHHHHHHHHHHhhcCCCh----hHHHHHhhhhhHHHhhhhhhc---CCCHHHHhH
Q 004414 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGL----PQALLCRVPFLKELLLLPALT---DGDEKVIGG 303 (755)
Q Consensus 231 ~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eii~~~~~~----~~~l~~~~~~l~~~~~~~~~~---~~d~e~~~~ 303 (755)
....... +.-..|.. ...+ ...+++.++. .+. .... +++......
T Consensus 299 --~~~~~~~--------~~~~~~~~--------------~~~~~~~~~~~il~~ll~---~l~-~~~~d~~d~~~~~r~~ 350 (861)
T 2bpt_A 299 --DIAYELA--------QFPQSPLQ--------------SYNFALSSIKDVVPNLLN---LLT-RQNEDPEDDDWNVSMS 350 (861)
T ss_dssp --HHHHHHH--------HCTTCSCC--------------CCCHHHHHHHHHHHHHHH---HTT-CCCCC-CCCCCHHHHH
T ss_pred --hhhhhhh--------hccCCchh--------------hHHHHHHHHHHHHHHHHH---HHH-hcccccccccCcHHHH
Confidence 0000000 00000000 0001 1222222221 111 0001 111233344
Q ss_pred HHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHH
Q 004414 304 LACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVF 383 (755)
Q Consensus 304 l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.+..+..++..... .....+++.+......+ ++.+.+.++..+..+.+.. . ...+.+++
T Consensus 351 a~~~L~~l~~~~~~------~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~---~----------~~~~~~~l 409 (861)
T 2bpt_A 351 AGACLQLFAQNCGN------HILEPVLEFVEQNITAD--NWRNREAAVMAFGSIMDGP---D----------KVQRTYYV 409 (861)
T ss_dssp HHHHHHHHHHHHGG------GGHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSS---C----------HHHHHHHH
T ss_pred HHHHHHHHHHHccH------hHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHcCC---C----------HHHHHHHH
Confidence 44444444443211 12235666666666654 5566666665554444321 0 12345667
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCc----HHHHHHHHHHhhcCCCCCCChhhhHH
Q 004414 384 SALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS----ATFIQKVFFGSWGSANVPIPWKEVET 459 (755)
Q Consensus 384 ~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~----~~~l~~~~~~~~~~~~~~~~W~~~EA 459 (755)
..+++.++..+.-+ . ...|.....++...+..+++ ..++..++..+...- .. +++..++
T Consensus 410 ~~il~~l~~~l~d~-------------~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l-~~-~~~v~~~ 472 (861)
T 2bpt_A 410 HQALPSILNLMNDQ-------------S--LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QD-HPKVATN 472 (861)
T ss_dssp HHHHHHHHHGGGCS-------------C--HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TS-CHHHHHH
T ss_pred HHHHHHHHHHcCCC-------------c--HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh-cc-ChHHHHH
Confidence 77888877765311 0 23465555666666555432 223444433222100 11 2788899
Q ss_pred HHHHHHhhhhhccc-cCCcc--chHHHHHHHHHhcc--CchhhhhhHHHHHHhHHHHHHHhhHHHHHhC-ccchHHHHHH
Q 004414 460 KLFALNVVSEVVLQ-EGQAF--DFSVIMQLVAVLSA--SRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNARPLLLF 533 (755)
Q Consensus 460 ~L~~l~~iae~~~~-~~~~~--~l~~i~~ll~~l~~--~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~-p~~l~~~l~~ 533 (755)
+..++..+++.+.+ ..... .++.++..+..+.+ ++.+ .+|..+ +.++|......... ..++..+++.
T Consensus 473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~------~vr~~a-~~al~~l~~~~~~~~~~~~~~l~~~ 545 (861)
T 2bpt_A 473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEF------NARASA-FSALTTMVEYATDTVAETSASISTF 545 (861)
T ss_dssp HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGG------GHHHHH-HHHHHHHHHHCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcch------HHHHHH-HHHHHHHHHHcchhhHHHHHHHHHH
Confidence 99999999887652 01111 13445543333333 2212 155554 48888777643321 2244555555
Q ss_pred HHHhccc-----------------CchHHHHHHHHHHHHHHhhcccCCCchHHHHHH-HHHHHHhcCCCh-hhHHHHHHH
Q 004414 534 LAAGISE-----------------AVSSNACASALRKICEDASALIDEPSNLEILMW-IGEALEKRHLPL-EDEEEVVGA 594 (755)
Q Consensus 534 l~~~l~~-----------------p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~-~~~~l~~~~l~~-~~~~~l~ea 594 (755)
++..+.+ +.++..+..++..+++.++..+. | +.+.++. +...+... +. ..+...+.+
T Consensus 546 l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~-~~~~l~~~l~~~l~~~--~~~~v~~~~~~~ 621 (861)
T 2bpt_A 546 VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE-P-VADMLMGLFFRLLEKK--DSAFIEDDVFYA 621 (861)
T ss_dssp HHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG-G-GHHHHHHHHHHHHHST--TGGGTHHHHHHH
T ss_pred HHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH-H-HHHHHHHHHHHHHccC--CCCcHHHHHHHH
Confidence 5554431 23677899999999999887663 3 5554443 33333322 23 568888899
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCC
Q 004414 595 ISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGD 674 (755)
Q Consensus 595 i~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~ 674 (755)
++.++...+.+ ..+++..++..++..++ .. ++... .. .+..++.+.+.++.
T Consensus 622 l~~l~~~~~~~--~~~~l~~i~~~l~~~l~----~~-------~~~vr----~~---a~~~l~~l~~~~~~--------- 672 (861)
T 2bpt_A 622 ISALAASLGKG--FEKYLETFSPYLLKALN----QV-------DSPVS----IT---AVGFIADISNSLEE--------- 672 (861)
T ss_dssp HHHHHHHHGGG--GHHHHHHHHHHHHHHHH----CT-------TSHHH----HH---HHHHHHHHHHHTGG---------
T ss_pred HHHHHHHHhhh--HHHHHHHHHHHHHHHhc----cc-------cHHHH----HH---HHHHHHHHHHHhch---------
Confidence 99998776544 24677777766666652 11 11111 11 23334444443331
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhh
Q 004414 675 DPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVS 738 (755)
Q Consensus 675 ~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~f~~ 738 (755)
.+.+.+..++|.+...+.. -..+.++.+.+..+++.++..+|..+.||++.+++.+......
T Consensus 673 -~~~~~~~~l~~~l~~~l~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~ 734 (861)
T 2bpt_A 673 -DFRRYSDAMMNVLAQMISN-PNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNT 734 (861)
T ss_dssp -GGHHHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred -hccchHHHHHHHHHHHhCC-ccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence 1345667777877776652 1124789999999999999999999999999999999987653
No 17
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.15 E-value=1.1e-06 Score=105.16 Aligned_cols=444 Identities=10% Similarity=0.067 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCC----CcHHHHHHHHHHHhhcCC-ChhHHHHHhhhhhHHHh
Q 004414 214 RKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ----SSFDVAIEVLVELVGRHE-GLPQALLCRVPFLKELL 288 (755)
Q Consensus 214 ~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~----~~~~~a~~~l~eii~~~~-~~~~~l~~~~~~l~~~~ 288 (755)
..+..|+..-.... .+.+ ..+.+++.+++.+.++ ..+..++.++..+..... +.....++.++ +.+
T Consensus 107 ~~~~~~l~~i~~~~----~~~~--~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll---~~l 177 (876)
T 1qgr_A 107 SSASQCVAGIACAE----IPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEIL---TAI 177 (876)
T ss_dssp CHHHHHHHHHHHHH----GGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH---HHH
T ss_pred HHHHHHHHHHHHhh----Cccc--ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHH---HHH
Confidence 56666766665532 1211 2456888888888765 357889999988887542 11111112221 111
Q ss_pred hhhhhcCC--CHHHHhHHHHHHHHHHHHhhHHHHhcChhH-HHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcc
Q 004414 289 LLPALTDG--DEKVIGGLACLMSEIGQAAPSLIVEASPEA-LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD 365 (755)
Q Consensus 289 ~~~~~~~~--d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~-~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~ 365 (755)
. ..+.++ +.+......+.+..+......-+. .... ..+++.+......+ +.++...+++++..+.+...
T Consensus 178 ~-~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~--~~~~~~~il~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~--- 249 (876)
T 1qgr_A 178 I-QGMRKEEPSNNVKLAATNALLNSLEFTKANFD--KESERHFIMQVVCEATQCP--DTRVRVAALQNLVKIMSLYY--- 249 (876)
T ss_dssp H-HHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHT--SHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSG---
T ss_pred H-HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhH---
Confidence 1 133333 455555555666555432211111 1111 13566666666553 56777788888777666421
Q ss_pred hhhhhhhhhhhhhhHHHHH-HHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhc-------------
Q 004414 366 ASIAKNKKHVEDMFFSVFS-ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLL------------- 431 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~-~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l------------- 431 (755)
..+.|++. .+++.++..+..+ + .+.|....+++..++...
T Consensus 250 -----------~~~~~~~~~~l~~~~~~~~~~~------------~---~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 303 (876)
T 1qgr_A 250 -----------QYMETYMGPALFAITIEAMKSD------------I---DEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp -----------GGCHHHHTTTHHHHHHHHHTCS------------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHhcCC------------c---hHHHHHHHHHHHHHHHHHHhHhhhhcccccc
Confidence 12445555 5666665544211 0 112333222222222110
Q ss_pred -----C---c------HHHHHHHHHHhhcCC--CCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCch
Q 004414 432 -----R---S------ATFIQKVFFGSWGSA--NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRS 495 (755)
Q Consensus 432 -----~---~------~~~l~~~~~~~~~~~--~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~ 495 (755)
+ . ...+..++..+.... ....+|..+.++..+++.+++.+.+ . . ++.++..+.....++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~-~-~~~~l~~l~~~l~~~~ 379 (876)
T 1qgr_A 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D-I-VPHVLPFIKEHIKNPD 379 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G-G-HHHHHHHHHHHTTCSS
T ss_pred CCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--h-h-HHHHHHHHHHHccCCC
Confidence 0 0 112333333332110 1135799999999999999988762 2 2 5677776665555554
Q ss_pred hhhhhHHHHHHhHHHHHHHhhHHHHH-h-CccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCchHHH-
Q 004414 496 EELKGFMHIVYRSLADVIGSYSKWIS-A-FQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEI- 570 (755)
Q Consensus 496 ~~~~~~~~v~~~t~~~~ig~y~~~~~-~-~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~- 570 (755)
. .+|..+ ++++|.+++... . -..+++.+++.++..+.++. |+..|+.++.++++.+......+++++.
T Consensus 380 ~------~~r~~a-~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~ 452 (876)
T 1qgr_A 380 W------RYRDAA-VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452 (876)
T ss_dssp H------HHHHHH-HHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHH
T ss_pred h------HHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHH
Confidence 3 367776 599999886432 1 12367888999999998754 8999999999999998875411235543
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHccCC------------chHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 004414 571 LMWIGEALEKRHLPLEDEEEVVGAISLILGSVS------------NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHN 638 (755)
Q Consensus 571 l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p------------~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~ 638 (755)
+..+...+. . +...+.....+++.++...+ ..+...+++ .+++..|.+++...... +
T Consensus 453 l~~l~~~l~-~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~----~~il~~L~~~l~~~~~~----~ 521 (876)
T 1qgr_A 453 LQCLIEGLS-A--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF----ELIVQKLLETTDRPDGH----Q 521 (876)
T ss_dssp HHHHHHHTT-S--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH----HHHHHHHHHHTTSCSSC----S
T ss_pred HHHHHHHHc-C--CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH----HHHHHHHHHHHhCcCcc----h
Confidence 444444442 2 35667888888888886532 001112334 34444555554432110 1
Q ss_pred ChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhh-------cc-c----hHHHHHH
Q 004414 639 PATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEH-------ME-N----GNLSTAA 706 (755)
Q Consensus 639 ~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~-------~~-~----~~v~e~~ 706 (755)
+. +. ...++.++.+.+..+. ...++++.++|.+...+...+ .. + .++.+.+
T Consensus 522 ~~-----~r--~~~~~~l~~l~~~~~~----------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~ 584 (876)
T 1qgr_A 522 NN-----LR--SSAYESLMEIVKNSAK----------DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLL 584 (876)
T ss_dssp TT-----HH--HHHHHHHHHHHHTCCS----------TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHH
T ss_pred hh-----HH--HHHHHHHHHHHHHCch----------hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHH
Confidence 10 00 1234445555444331 123455667776665554210 11 1 4567889
Q ss_pred HHHHHHHHHHHh-hhhHhhHHHHHHHHHHHHhhc
Q 004414 707 CRALSLAIQSSG-QHFVTLLPQVLDCLSTNFVSF 739 (755)
Q Consensus 707 ~~~~~~~~~~l~-~~~~~~l~~~~~~l~~~f~~~ 739 (755)
|.++..++..+| ..+.|+++.+++.++..+...
T Consensus 585 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~ 618 (876)
T 1qgr_A 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQST 618 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhc
Confidence 999999999999 999999999999999888653
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.05 E-value=8.3e-07 Score=100.93 Aligned_cols=474 Identities=13% Similarity=0.044 Sum_probs=273.2
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcC-h--HHHHH----HHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCC
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQT-D--AAWEI----ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~s-~--~aw~~----~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l 81 (755)
+..++..+....++..|..|-+.|.++-.. + .-|.. ...+..+. +..+|..|+..+..-.. .+
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~------~~~~R~~a~~~l~~~~~----~~ 157 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD------WFTSRTSACGLFSVCYP----RV 157 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS------SHHHHHHHGGGHHHHTT----TS
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHH----hc
Confidence 444444554556788899999888887653 1 12332 33333322 35788888888876443 24
Q ss_pred ChHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHhcc---cCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 004414 82 QSAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (755)
Q Consensus 82 ~~~~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~---W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (755)
+...+. .++..+.... .....||...+.+++.++-..+. ++..++.+...++.. ++......+..|..+.
T Consensus 158 ~~~~~~----~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 158 SSAVKA----ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE--QDSVRLLAVEACVNIA 231 (588)
T ss_dssp CHHHHH----HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCS--CHHHHTTHHHHHHHHH
T ss_pred CHHHHH----HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHH
Confidence 444444 4444443322 34577999999999988765441 355566666655432 2222233444444444
Q ss_pred hhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 004414 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (755)
Q Consensus 158 EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~ 237 (755)
+.+. +.. ..+.++..+.+.+.+ ++..++..+.+++....... +.+ .
T Consensus 232 ~~~~----------~~~----------~~~~~~~~l~~~~~d--------~~~~vR~~a~~~l~~l~~~~-----~~~-~ 277 (588)
T 1b3u_A 232 QLLP----------QED----------LEALVMPTLRQAAED--------KSWRVRYMVADKFTELQKAV-----GPE-I 277 (588)
T ss_dssp HHSC----------HHH----------HHHHTHHHHHHHHTC--------SSHHHHHHHHHTHHHHHHHH-----CHH-H
T ss_pred HhCC----------HHH----------HHHHHHHHHHHHccC--------CCHHHHHHHHHHHHHHHHHh-----Ccc-c
Confidence 4331 110 123344555554433 23568999999998877631 111 2
Q ss_pred cccchHHHHHhhcCCC--CcHHHHHHHHHHHhhcCCC------hhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHH
Q 004414 238 AAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG------LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (755)
Q Consensus 238 ~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~~~~------~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~ 309 (755)
....+++.+.+.+.++ +++..|+.++..+...... +...+++.+. ....+.+.......+..+.
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~--------~~l~d~~~~vR~~a~~~l~ 349 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIK--------ELVSDANQHVKSALASVIM 349 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHH--------HHHTCSCHHHHHHHHTTGG
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHH--------HHhcCCCHHHHHHHHHHHH
Confidence 2346788888888765 4688899999888875432 1223333322 1334455666556665555
Q ss_pred HHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHH
Q 004414 310 EIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDA 389 (755)
Q Consensus 310 ~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 389 (755)
.++...-... ....+++.++.+...+ +.+|...++..+..+.+.+ ..+ . +...+++.
T Consensus 350 ~l~~~~~~~~-----~~~~l~p~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~---~~~------~-------~~~~~lp~ 406 (588)
T 1b3u_A 350 GLSPILGKDN-----TIEHLLPLFLAQLKDE--CPEVRLNIISNLDCVNEVI---GIR------Q-------LSQSLLPA 406 (588)
T ss_dssp GGHHHHCHHH-----HHHHTHHHHHHHHTCS--CHHHHHHHHTTCHHHHHHS---CHH------H-------HHHHHHHH
T ss_pred HHHHHhhHhH-----HHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHHhc---CHH------H-------HHHHHHHH
Confidence 5543321111 1124556666666664 4577777777666665542 110 0 11233343
Q ss_pred HHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcH----HHHHHHHHHhhcCCCCCCChhhhHHHHHHHH
Q 004414 390 LLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA----TFIQKVFFGSWGSANVPIPWKEVETKLFALN 465 (755)
Q Consensus 390 l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~----~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~ 465 (755)
+...+ .| .+ ...|..+.+.+..+...+|.+ .++..+...+ ...+|.-+++++.+++
T Consensus 407 l~~~~---~d---~~---------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-----~d~~~~Vr~~a~~~l~ 466 (588)
T 1b3u_A 407 IVELA---ED---AK---------WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL-----VDHVYAIREAATSNLK 466 (588)
T ss_dssp HHHHH---TC---SS---------HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG-----GCSSHHHHHHHHHHHH
T ss_pred HHHHh---cC---CC---------chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh-----cCCcHHHHHHHHHHHH
Confidence 33322 11 11 234777778888887777764 2333333322 2356888999999999
Q ss_pred hhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccC--ch
Q 004414 466 VVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VS 543 (755)
Q Consensus 466 ~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p--~v 543 (755)
.+++.+..+. . .+.++..+..+.+++.. .+|.++ ++++|.+++.+... .+++.+++.+.+.+.++ +|
T Consensus 467 ~l~~~~~~~~--~-~~~llp~l~~~~~~~~~------~~R~~a-~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~d~~~~V 535 (588)
T 1b3u_A 467 KLVEKFGKEW--A-HATIIPKVLAMSGDPNY------LHRMTT-LFCINVLSEVCGQD-ITTKHMLPTVLRMAGDPVANV 535 (588)
T ss_dssp HHHHHHCHHH--H-HHHTHHHHHHTTTCSCH------HHHHHH-HHHHHHHHHHHHHH-HHHHHTHHHHHHGGGCSCHHH
T ss_pred HHHHHhCchh--H-HHHHHHHHHHHhhCCCH------HHHHHH-HHHHHHHHHhcCHH-HHHHHHHHHHHhhCCCCCchH
Confidence 9988765321 1 24455555555556553 367776 49999999877543 36778889999989875 59
Q ss_pred HHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 004414 544 SNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLIL 599 (755)
Q Consensus 544 ~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (755)
+..++.++..++...+... ..+.+......+. ..-+.+.|....++++.+-
T Consensus 536 r~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~-~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 536 RFNVAKSLQKIGPILDNST----LQSEVKPILEKLT-QDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhh
Confidence 9999999999987654432 1233333333332 2335667888888877653
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.70 E-value=9.8e-05 Score=91.67 Aligned_cols=513 Identities=11% Similarity=0.081 Sum_probs=267.2
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhc--ChH---------HHHHHHHhhcC-CCCCCCcchhHHHHHHHHHHHHHh
Q 004414 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQ--TDA---------AWEIATSILTS-DRQSFLTDFEVEFFAAQILKRKIQ 75 (755)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~qA~~~L~~fq~--s~~---------aw~~~~~LL~~-~~~~~~~~~~v~ffaa~tL~~ki~ 75 (755)
.+...+-.....+++..|..|-.-|.++-. .++ .|.-....|.. -++ +.+..+|..|..+|..-+.
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~--~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK--QEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC--CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHH
Confidence 333333333345566667777777776643 122 36543332221 110 1245888889888877665
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHH
Q 004414 76 NEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (755)
Q Consensus 76 ~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL 153 (755)
..-..+.+ ....+-..++..+. .....||.+.+.+++.++-... ..+..++.++..+....+ .......++.+
T Consensus 164 ~~~~~l~~-~~~~ll~~l~~~L~---~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l 238 (1230)
T 1u6g_C 164 RQGGLLVN-FHPSILTCLLPQLT---SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCI 238 (1230)
T ss_dssp HTCSSCTT-THHHHHHHHGGGGG---CSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHH
T ss_pred HhHhHHHH-HHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHH
Confidence 32223332 22333333333332 3446799999989988875543 245667888887765321 11222234444
Q ss_pred hhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccC
Q 004414 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (755)
Q Consensus 154 ~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~ 233 (755)
..+.+-+.+ .+..+.+.++..+.+.+... +++++..++.++..|+....
T Consensus 239 ~~l~~~~~~------------------~~~~~l~~l~~~ll~~l~d~--------~~~vR~~a~~~l~~l~~~~~----- 287 (1230)
T 1u6g_C 239 AAISRQAGH------------------RIGEYLEKIIPLVVKFCNVD--------DDELREYCIQAFESFVRRCP----- 287 (1230)
T ss_dssp HHHHHHSSG------------------GGTTSCTTHHHHHHHHHSSC--------CTTTHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHhHH------------------HHHHHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHHHCh-----
Confidence 444443321 01234556677777666542 34689999999999998531
Q ss_pred cch-hcccchHHHHHhhcCC---------------------------------------CCcHHHHHHHHHHHhhcCCCh
Q 004414 234 QGS-LAAHPLLNFVFNSLQV---------------------------------------QSSFDVAIEVLVELVGRHEGL 273 (755)
Q Consensus 234 ~~~-~~~~~ll~~~~~~L~~---------------------------------------~~~~~~a~~~l~eii~~~~~~ 273 (755)
.+. .....+++.+++.+.. .+++.+|++++..+.....+.
T Consensus 288 ~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~ 367 (1230)
T 1u6g_C 288 KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM 367 (1230)
T ss_dssp CCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhH
Confidence 111 0124455666555531 013667888887776533221
Q ss_pred hHHH----HHhhh-----------------------------------------------------hhHHHhhhhhhcCC
Q 004414 274 PQAL----LCRVP-----------------------------------------------------FLKELLLLPALTDG 296 (755)
Q Consensus 274 ~~~l----~~~~~-----------------------------------------------------~l~~~~~~~~~~~~ 296 (755)
.... ++.+. .+.+.+. +.+.++
T Consensus 368 ~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~-~~l~~~ 446 (1230)
T 1u6g_C 368 LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH-KQMKEK 446 (1230)
T ss_dssp HHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHH-HHTTCS
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHH-HHhccC
Confidence 1111 11100 0000010 113344
Q ss_pred CHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhh
Q 004414 297 DEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVE 376 (755)
Q Consensus 297 d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~ 376 (755)
+.......+.++.++.+.....+. +....+++.++.....+....++...++..+..+.+.. . .
T Consensus 447 ~~~vr~~~~~~L~~l~~~~~~~l~---~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~---~----------~ 510 (1230)
T 1u6g_C 447 SVKTRQCCFNMLTELVNVLPGALT---QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH---S----------P 510 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTTTG---GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS---C----------G
T ss_pred CHHHHHHHHHHHHHHHHHchhhhH---HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC---C----------H
Confidence 444444555555554443221111 24456777777777664211244444444444433321 1 1
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCc---------HHHHHHHHHHhhcC
Q 004414 377 DMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS---------ATFIQKVFFGSWGS 447 (755)
Q Consensus 377 ~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~---------~~~l~~~~~~~~~~ 447 (755)
..+.|++..+++.++..+. | .....|...-.++.+++..+|+ ..++..++..+...
T Consensus 511 ~~~~~~l~~llp~L~~~l~---d------------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 575 (1230)
T 1u6g_C 511 QVFHPHVQALVPPVVACVG---D------------PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR 575 (1230)
T ss_dssp GGGHHHHTTTHHHHHHHHT---C------------SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHc---c------------cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHH
Confidence 3366777778887776441 1 0123344444567777666665 12444444432210
Q ss_pred -CCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHH--hCc
Q 004414 448 -ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS--AFQ 524 (755)
Q Consensus 448 -~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~--~~p 524 (755)
.....+..-+++++++++.+++.....-... ++.+++.+......+. .|.++ +..++..+.-.. .-.
T Consensus 576 l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~-~~~~l~~L~~~l~~e~--------~r~~~-~~al~~i~~~~~~~~~~ 645 (1230)
T 1u6g_C 576 LKAADIDQEVKERAISCMGQIICNLGDNLGSD-LPNTLQIFLERLKNEI--------TRLTT-VKALTLIAGSPLKIDLR 645 (1230)
T ss_dssp HSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTH-HHHHHHHHHHHTTSSS--------HHHHH-HHHHHHHTTCSSCCCCH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCchhhhh-HHHHHHHHHHHhccch--------hHHHH-HHHHHHHHhCccccchH
Confidence 0124567889999999999988765432211 4555555443333222 24444 377776542110 012
Q ss_pred cchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHc
Q 004414 525 TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILG 600 (755)
Q Consensus 525 ~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~vi~ 600 (755)
.+++.+++.+...+.++. ++..|+.++.+++..+...+. .+.+..+...+.. ..-+.+.....+++++.++.
T Consensus 646 ~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~----~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~ 721 (1230)
T 1u6g_C 646 PVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT----AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK 721 (1230)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCC----HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCC----HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Confidence 467788888888887644 889999999999999876542 2233333322111 12244567788888888887
Q ss_pred cCCc
Q 004414 601 SVSN 604 (755)
Q Consensus 601 ~~p~ 604 (755)
..|.
T Consensus 722 ~~~~ 725 (1230)
T 1u6g_C 722 VYPS 725 (1230)
T ss_dssp SCGG
T ss_pred hCch
Confidence 6654
No 20
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.26 E-value=8.7e-05 Score=73.92 Aligned_cols=197 Identities=15% Similarity=0.165 Sum_probs=129.0
Q ss_pred CCChhhhHHHHHHHHh-hhhhccccCC-ccchHHHHHHHHHhc-cCchhhhhhHHHHHHhHHHHHHHhhHHHHH-h-Cc-
Q 004414 451 PIPWKEVETKLFALNV-VSEVVLQEGQ-AFDFSVIMQLVAVLS-ASRSEELKGFMHIVYRSLADVIGSYSKWIS-A-FQ- 524 (755)
Q Consensus 451 ~~~W~~~EA~L~~l~~-iae~~~~~~~-~~~l~~i~~ll~~l~-~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~-~-~p- 524 (755)
+.+|.++-+++-++.. +.++++.-.. ..++..++..+.... ++++. .+|..+ +.++|.+++-+. . -.
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~------~v~~~A-~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI------QAVALA-AQSVELICDKLKTPGFSK 99 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH------HHHHHH-HHHHHHHHHHHCTTTSCH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH------HHHHHH-HHHHHHHHHhcccccccH
Confidence 5789999999999999 9876543210 112466776655544 67664 366666 699999999886 3 34
Q ss_pred cchHHHHHHHHHhcccC--chHHHHHHHHHHHHHHhhcccCCCchHHHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 004414 525 TNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISLILGS 601 (755)
Q Consensus 525 ~~l~~~l~~l~~~l~~p--~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (755)
.|...+++.++..+.++ .|+.+|..|+..+|+.|...... .+++.++ .+...+.+. +...|...+..+++++..
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH
Confidence 68889999999999985 48899999999999998653210 1244333 333333211 233344444444333321
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHH
Q 004414 602 VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALL 681 (755)
Q Consensus 602 ~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~ 681 (755)
.+. .+..+...+
T Consensus 177 ~~~--------------------------------------------------------------------~~~~l~~~l 188 (249)
T 2qk1_A 177 EKD--------------------------------------------------------------------GYSTLQRYL 188 (249)
T ss_dssp CCS--------------------------------------------------------------------CSHHHHHHH
T ss_pred cCC--------------------------------------------------------------------cchhHHHHH
Confidence 110 001123445
Q ss_pred -HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhh-hHhhHHHH
Q 004414 682 -RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQH-FVTLLPQV 728 (755)
Q Consensus 682 -~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~-~~~~l~~~ 728 (755)
..++|.+...+.. .+.+|.++++.++..+.+.+|+. +.||++.+
T Consensus 189 ~~~iip~l~~~l~D---~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 189 KDEVVPIVIQIVND---TQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp TTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 5667777777753 57889999999999999999985 99999875
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.05 E-value=0.0077 Score=65.49 Aligned_cols=283 Identities=9% Similarity=0.051 Sum_probs=157.3
Q ss_pred ccchHHHHHhhcCCC----CcHHHHHHHHHHHhhcC-CC----hhHHHHHhhhhhHHHhhhhhhcCC--CHHHHhHHHHH
Q 004414 239 AHPLLNFVFNSLQVQ----SSFDVAIEVLVELVGRH-EG----LPQALLCRVPFLKELLLLPALTDG--DEKVIGGLACL 307 (755)
Q Consensus 239 ~~~ll~~~~~~L~~~----~~~~~a~~~l~eii~~~-~~----~~~~l~~~~~~l~~~~~~~~~~~~--d~e~~~~l~~l 307 (755)
...+++.+++.+.++ ..++.|+.++..+.... .+ +...+++.+. ..+.++ +.++....++.
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~--------~~l~~~~~~~~vr~~a~~~ 197 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAII--------QGMRKEEPSNNVKLAATNA 197 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHH--------HHHSTTCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHH--------HHhCCCCCCHHHHHHHHHH
Confidence 456888888888765 46888999999888765 22 2223333222 133333 45555555565
Q ss_pred HHHHHHHhhHHHHhcChhHH-HHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHH-H
Q 004414 308 MSEIGQAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFS-A 385 (755)
Q Consensus 308 ~~~l~e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~ 385 (755)
+..+.+..-..+. ..... -+++.+......+ +.++...++..+..+.+... ..+.+++. .
T Consensus 198 l~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~--------------~~~~~~~~~~ 259 (462)
T 1ibr_B 198 LLNSLEFTKANFD--KESERHFIMQVVCEATQCP--DTRVRVAALQNLVKIMSLYY--------------QYMETYMGPA 259 (462)
T ss_dssp HHHHTTTTHHHHT--SHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCG--------------GGCTTTTTTT
T ss_pred HHHHHHHHHHhhh--hhHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 5554321111110 11111 1355555555543 55677777777666665421 11222222 3
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhc---------------------Cc------HHHHH
Q 004414 386 LLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLL---------------------RS------ATFIQ 438 (755)
Q Consensus 386 Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l---------------------~~------~~~l~ 438 (755)
+++.++..++ + .. .+.|..+.+.+..++... .. ...+.
T Consensus 260 l~~~~~~~~~---~---------~~---~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 324 (462)
T 1ibr_B 260 LFAITIEAMK---S---------DI---DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (462)
T ss_dssp HHHHHHHHHH---C---------SS---HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc---C---------Cc---hHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccH
Confidence 3443333221 0 01 123444444444443321 00 11223
Q ss_pred HHHHHhhcCC--CCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhh
Q 004414 439 KVFFGSWGSA--NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSY 516 (755)
Q Consensus 439 ~~~~~~~~~~--~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y 516 (755)
.++..+.... ....+|..+.++.-+++.+++.+.+ . . ++.++..+....+++.. .+|.++ +.++|..
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~-~-~~~~~~~l~~~l~~~~~------~~r~aa-l~~l~~l 393 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D-I-VPHVLPFIKEHIKNPDW------RYRDAA-VMAFGCI 393 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--T-H-HHHHHHHHHHHTTCSSH------HHHHHH-HHHHHHT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--H-H-HHHHHHHHHHHhcCCCh------HHHHHH-HHHHHHH
Confidence 3333332210 1235699999999999999998752 2 2 57777777666665554 367776 5999999
Q ss_pred HHHHHh--CccchHHHHHHHHHhcccC--chHHHHHHHHHHHHHHhhcccCCCchHHHHHH
Q 004414 517 SKWISA--FQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMW 573 (755)
Q Consensus 517 ~~~~~~--~p~~l~~~l~~l~~~l~~p--~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~ 573 (755)
++-... -..+++.+++.+++.+.++ .|+..|+.++.++|+.+...+..+.+++.++.
T Consensus 394 ~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~ 454 (462)
T 1ibr_B 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454 (462)
T ss_dssp SSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 862210 1136688999999999874 59999999999999999886532345554443
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.00 E-value=0.0038 Score=70.62 Aligned_cols=459 Identities=13% Similarity=0.083 Sum_probs=228.6
Q ss_pred ccCCChHHHHHHHHHHHHHhc-ChHHHHHHHHhhc-CCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 004414 17 NHDTESCNRVAANQWLVQFQQ-TDAAWEIATSILT-SDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALL 94 (755)
Q Consensus 17 y~~~d~~~~~qA~~~L~~fq~-s~~aw~~~~~LL~-~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll 94 (755)
.+++|...|+-+--++..+-+ .++.-..+..-+. .-. +.++.+|-.|..+|-+.. .++....+-..+.
T Consensus 58 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~---~~n~~ir~~AL~~L~~i~-------~~~~~~~l~~~l~ 127 (591)
T 2vgl_B 58 MQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCE---DPNPLIRALAVRTMGCIR-------VDKITEYLCEPLR 127 (591)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSS---SSSHHHHHHHHHHHHTCC-------SGGGHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHcCC-------hHHHHHHHHHHHH
Confidence 345677777777777776655 3544333333222 222 235677877777664421 3444444444444
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHhc-ccC--chHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCC
Q 004414 95 VAAKRFSSGPPQLLTQICLALSALILRAV-EHG--KPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNIS 171 (755)
Q Consensus 95 ~~l~~~~~~~~~v~~kL~~~la~l~~~~~-~W~--~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~ 171 (755)
..+. ..++.||++-+.++..++-..+ .++ .+++.+...+... ++......+..|..+.++-.+..... +
T Consensus 128 ~~L~---d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~~~~~--l- 199 (591)
T 2vgl_B 128 KCLK---DEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADS--NPMVVANAVAALSEISESHPNSNLLD--L- 199 (591)
T ss_dssp HHSS---CSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSCCSCCSCC--C-
T ss_pred HHcC---CCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhCCCccchh--c-
Confidence 4332 3567899999999998876544 233 3455555555432 33334445555555554421100000 1
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcC
Q 004414 172 SAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQ 251 (755)
Q Consensus 172 ~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~ 251 (755)
.+..+.-+.+.+... ++-.+..+++++..+ + |.+.-....+++.+...|+
T Consensus 200 --------------~~~~~~~Ll~~l~~~--------~~~~q~~il~~l~~l---~-----~~~~~~~~~~l~~l~~~l~ 249 (591)
T 2vgl_B 200 --------------NPQNINKLLTALNEC--------TEWGQIFILDCLSNY---N-----PKDDREAQSICERVTPRLS 249 (591)
T ss_dssp --------------HHHHHHHHHHHHHHC--------CHHHHHHHHHHHHTS---C-----CCSHHHHHHHHHHHTTCSC
T ss_pred --------------cHHHHHHHHHcCCCC--------CchHHHHHHHHHHHh---C-----CCChHHHHHHHHHHHHHHc
Confidence 111122222222221 123444555544322 1 1111113457777777777
Q ss_pred C--CCcHHHHHHHHHHHhh---cCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhH
Q 004414 252 V--QSSFDVAIEVLVELVG---RHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEA 326 (755)
Q Consensus 252 ~--~~~~~~a~~~l~eii~---~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~ 326 (755)
+ +.++..|+.++..+.. ...+..+.+...+.. .+. .+.+.|.+......+.+..++..++..+..
T Consensus 250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~---~L~--~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~----- 319 (591)
T 2vgl_B 250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAP---PLV--TLLSGEPEVQYVALRNINLIVQKRPEILKQ----- 319 (591)
T ss_dssp SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHH---HHH--HHTTSCHHHHHHHHHHHHHHHHHCCSTTTT-----
T ss_pred CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH---HHH--HHhcCCccHHHHHHHHHHHHHHhChHHHHH-----
Confidence 5 4566777788777653 223444444443332 111 112345554444444455554444332221
Q ss_pred HHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 004414 327 LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGM 406 (755)
Q Consensus 327 ~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~ 406 (755)
.+..+ .|... .+..|...+++.|+.+... + . ...+++.+...++ + .
T Consensus 320 --~~~~~-~~~~~--d~~~Ir~~al~~L~~l~~~----~--------n--------v~~iv~~L~~~l~---~-----~- 365 (591)
T 2vgl_B 320 --EIKVF-FVKYN--DPIYVKLEKLDIMIRLASQ----A--------N--------IAQVLAELKEYAT---E-----V- 365 (591)
T ss_dssp --CTTTT-SCCTT--SCHHHHHHHHHHHHHTCCS----S--------T--------HHHHHHHHHHHTT---S-----S-
T ss_pred --HHHhh-eeccC--ChHHHHHHHHHHHHHHCCh----h--------h--------HHHHHHHHHHHHh---c-----C-
Confidence 11111 12212 1345677888887765432 0 1 1123333333221 1 0
Q ss_pred CCCCchHHHHHHHHhHHHHHHHHhcCc--HHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHH
Q 004414 407 VDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIM 484 (755)
Q Consensus 407 ~d~~d~f~~~R~~~~d~l~~~~~~l~~--~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~ 484 (755)
+ .+||..+...+..++.-..+ +.++..+...+.. ..+|-..|+ +.+++.+....+.... ..+.
T Consensus 366 ---d---~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~----~~~~v~~e~-i~~l~~ii~~~p~~~~----~~v~ 430 (591)
T 2vgl_B 366 ---D---VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT----KVNYVVQEA-IVVIRDIFRKYPNKYE----SIIA 430 (591)
T ss_dssp ---C---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----CCHHHHHHH-HHHHHHHHHHSCSSCC----TTHH
T ss_pred ---C---HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcc----cchHHHHHH-HHHHHHHHHHCcchHH----HHHH
Confidence 1 24677777677666543322 2366666554432 245666666 5577766554432111 1233
Q ss_pred HHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhccc
Q 004414 485 QLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALI 562 (755)
Q Consensus 485 ~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~l 562 (755)
.+...+.....+ .++..+ +|++|+|++++.. .+.++..+++.+.+ +.++..+..|+.++...++..
T Consensus 431 ~L~~~l~~~~~~------~~~~~~-~wilGey~~~~~~----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~- 498 (591)
T 2vgl_B 431 TLCENLDSLDEP------DARAAM-IWIVGEYAERIDN----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE- 498 (591)
T ss_dssp HHHHTTTTCCSH------HHHHHH-HHHHHTTCTTCTT----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-
T ss_pred HHHHHHHhccCH------HHHHHH-HHHHHcccccccC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-
Confidence 344444333332 245555 5999999987653 34566667766654 458888899999998755421
Q ss_pred CCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 004414 563 DEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (755)
Q Consensus 563 ~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~v 598 (755)
..+.+..+.........+.+.|.+.++..+.+
T Consensus 499 ----~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 499 ----TQELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp ----THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 12344444443322334567777777665544
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.86 E-value=0.00066 Score=67.24 Aligned_cols=98 Identities=11% Similarity=0.088 Sum_probs=70.4
Q ss_pred CCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhc-cCchhhhhhHHHHHHhHHHHHHHhhHHHHHhC-ccchH
Q 004414 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNAR 528 (755)
Q Consensus 451 ~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~-~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~-p~~l~ 528 (755)
+.+|..+.+++.++..+.++.+.-... .+..++..+.... ++++. .+|..+ +.++|.++.-+... ..+++
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~------~V~~~a-~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNV------VLVAMA-GKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCH------HHHHHH-HHHHHHHHHHHGGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCH------HHHHHH-HHHHHHHHHHHhhhHHHHHH
Confidence 478999999999999998874331111 1466776655544 35553 366666 59999999766432 24678
Q ss_pred HHHHHHHHhcccCc--hHHHHHHHHHHHHH
Q 004414 529 PLLLFLAAGISEAV--SSNACASALRKICE 556 (755)
Q Consensus 529 ~~l~~l~~~l~~p~--v~~~Aa~al~~l~~ 556 (755)
.+++.++..+.++. ++.+|+.++..+++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 88999999998865 88889999988875
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.40 E-value=0.29 Score=55.35 Aligned_cols=430 Identities=12% Similarity=0.069 Sum_probs=205.4
Q ss_pred chhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcc-cCchHHHHHHHhh
Q 004414 59 DFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVE-HGKPIEKLFYSLQ 137 (755)
Q Consensus 59 ~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-W~~~i~~li~~~~ 137 (755)
++.+|-.|..+|-+- . +++....+-..+...+. ..++.||++-+.++..++...+. =+.+++.+...+.
T Consensus 120 n~~vr~lAL~~L~~i-~------~~~~~~~l~~~l~~~L~---~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~ 189 (618)
T 1w63_A 120 TQFVQGLALCTLGCM-G------SSEMCRDLAGEVEKLLK---TSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLN 189 (618)
T ss_dssp SSHHHHHHHHHHHHH-C------CHHHHHHHHHHHHHHHH---SCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTT
T ss_pred CHhHHHHHHHHHHhc-C------CHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhC
Confidence 456677777776442 2 23333344444444443 35688999999999888876541 1122233333332
Q ss_pred cccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCC--C-CcchhhhHH
Q 004414 138 NLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGG--V-PVQLHDRNR 214 (755)
Q Consensus 138 ~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~--~-~~~~~~l~~ 214 (755)
.. ++......+..|..+.+.- ++ ....+....+.++..|.+.......++ . +.+++-.+.
T Consensus 190 D~--d~~V~~~Al~~L~~i~~~~-----------~~----~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 190 EK--NHGVLHTSVVLLTEMCERS-----------PD----MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp CC--CHHHHHHHHHHHHHHCCSH-----------HH----HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred CC--CHhHHHHHHHHHHHHHHhC-----------hH----HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 21 2223334444444443220 01 123344567777777776554322110 0 012344667
Q ss_pred HHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCC--------CCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHH
Q 004414 215 KILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV--------QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKE 286 (755)
Q Consensus 215 ~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~--------~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~ 286 (755)
.+++++....... .+. ...+++.+.+.+.. ..+.-.|+.++..+ ... ..+......
T Consensus 253 ~il~~L~~l~~~~------~~~--~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l---~~~--~~l~~~a~~--- 316 (618)
T 1w63_A 253 RILRLLRILGRND------DDS--SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI---KSE--SGLRVLAIN--- 316 (618)
T ss_dssp HHHHHHHHHTTTC------HHH--HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS---CCC--HHHHHHHHH---
T ss_pred HHHHHHHHhCCCC------HHH--HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc---CCC--HHHHHHHHH---
Confidence 7777777654421 111 12344444444321 11223344444332 211 111111111
Q ss_pred HhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcch
Q 004414 287 LLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDA 366 (755)
Q Consensus 287 ~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~ 366 (755)
.+. ..+.+.|.+...-....+..++..++..+. .....++.|...+ |..|...+++-.+.+... +
T Consensus 317 ~L~-~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-------~~~~~i~~~l~d~--d~~Ir~~alelL~~l~~~----~- 381 (618)
T 1w63_A 317 ILG-RFLLNNDKNIRYVALTSLLKTVQTDHNAVQ-------RHRSTIVDCLKDL--DVSIKRRAMELSFALVNG----N- 381 (618)
T ss_dssp HHH-HHHTCSSTTTHHHHHHHHHHHHHHHHHHHG-------GGHHHHHHGGGSS--CHHHHHHHHHHHHHHCCS----S-
T ss_pred HHH-HHHhCCCCchHHHHHHHHHHHHhhCHHHHH-------HHHHHHHHHccCC--ChhHHHHHHHHHHHHccc----c-
Confidence 111 123344554433334455556555554443 2345677777775 667888888876555432 0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCc--HHHHHHHHHHh
Q 004414 367 SIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGS 444 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~--~~~l~~~~~~~ 444 (755)
. ..+ ++..++..+.- + + .+||..+...+..++....+ ..++..++..+
T Consensus 382 -------n----v~~----iv~eL~~~l~~--~----------d---~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL 431 (618)
T 1w63_A 382 -------N----IRG----MMKELLYFLDS--C----------E---PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVL 431 (618)
T ss_dssp -------S----THH----HHHHHHHHHHH--C----------C---HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH
T ss_pred -------c----HHH----HHHHHHHHHHh--C----------C---HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 1 122 22333222210 0 0 35687777777777665433 24666666544
Q ss_pred hcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccC-chhhhhhHHHHHHhHHHHHHHhhHHHHHh-
Q 004414 445 WGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSAS-RSEELKGFMHIVYRSLADVIGSYSKWISA- 522 (755)
Q Consensus 445 ~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~-~~~~~~~~~~v~~~t~~~~ig~y~~~~~~- 522 (755)
... .++...|+ +..+..+....++ -. -..+..++..+.++ .+.. +...+ .|++|.|++.+..
T Consensus 432 ~~~----~~~v~~~~-~~~l~~ii~~~p~-l~---~~~v~~L~~~l~~~~~~~~------~~~~~-~wilGEy~~~i~~~ 495 (618)
T 1w63_A 432 TTA----GSYVRDDA-VPNLIQLITNSVE-MH---AYTVQRLYKAILGDYSQQP------LVQVA-AWCIGEYGDLLVSG 495 (618)
T ss_dssp HHT----GGGSCSSH-HHHHHHHHHHSCS-TH---HHHHHHHHHHHHHCCSCSH------HHHHH-HHHHHHHHHHHTTC
T ss_pred Hhc----cchhHHHH-HHHHHHHHhcChh-HH---HHHHHHHHHHHhcccccHH------HHHHH-HHHHhhhHHHhccc
Confidence 321 12222232 3334443332221 11 01222333333321 1111 23344 5999999998854
Q ss_pred ----------CccchHHHHHHHHHh-cccCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHH
Q 004414 523 ----------FQTNARPLLLFLAAG-ISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEV 591 (755)
Q Consensus 523 ----------~p~~l~~~l~~l~~~-l~~p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l 591 (755)
+|..+...+.-++.. ..++.++..+-.|+.++...++ ...+.+..+.... ....+.+.|.+.
T Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~------~~~~~l~~~L~~~-~~~~d~evrdRA 568 (618)
T 1w63_A 496 QCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFT------CTVNRIKKVVSIY-GSSIDVELQQRA 568 (618)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS------SCHHHHHHHHHHH-TTCSCHHHHHHH
T ss_pred ccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc------chHHHHHHHHHHh-cCCCCHHHHHHH
Confidence 333444555555544 3456688888999999887553 2344455554443 234466777777
Q ss_pred HHHHHHHH
Q 004414 592 VGAISLIL 599 (755)
Q Consensus 592 ~eai~~vi 599 (755)
++....+-
T Consensus 569 ~~y~~ll~ 576 (618)
T 1w63_A 569 VEYNALFK 576 (618)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 77655543
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.35 E-value=0.0024 Score=69.32 Aligned_cols=331 Identities=11% Similarity=0.022 Sum_probs=174.8
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhccc-chHHHHHhhcCCC---CcHHHHHHHHHHHhhcCCChhHHHH-Hhhhh
Q 004414 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAH-PLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALL-CRVPF 283 (755)
Q Consensus 209 ~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~-~ll~~~~~~L~~~---~~~~~a~~~l~eii~~~~~~~~~l~-~~~~~ 283 (755)
++.++..++.++..-+.... +-+....... .+++.+.+.|.++ +++..|+.++..+.....+..+.++ .+.
T Consensus 33 ~~~~r~~A~~~L~~l~~~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-- 108 (450)
T 2jdq_A 33 SPEQQLSATQKFRKLLSKEP--NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGA-- 108 (450)
T ss_dssp CHHHHHHHHHHHHHHHHSSS--SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTH--
T ss_pred CHHHHHHHHHHHHHHhcCCC--CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCC--
Confidence 35688899999988765211 1122233344 7899999988865 4678899999988875433222222 111
Q ss_pred hHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhh---HHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHH
Q 004414 284 LKELLLLPALTDGDEKVIGGLACLMSEIGQAAP---SLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASY 360 (755)
Q Consensus 284 l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~---~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~ 360 (755)
.+.+. ..+.++|.+.....+..+..++.... ..+.+ ...++.++.+..... +.++...+...+..+...
T Consensus 109 -i~~L~-~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-----~~~i~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 109 -VPIFI-ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD-----CNILPPLLQLFSKQN-RLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp -HHHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-----TTCHHHHHHHTTSCC-CHHHHHHHHHHHHHHHCC
T ss_pred -HHHHH-HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-----CCCHHHHHHHhcCCC-CHHHHHHHHHHHHHHhCC
Confidence 12222 24455677777777777777765421 12221 134566666666421 467777777776666542
Q ss_pred hhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcH------
Q 004414 361 ILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA------ 434 (755)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~------ 434 (755)
- +.. ...... ..+++.++..+. + . | ...|..+..++.+++......
T Consensus 181 ~---~~~------~~~~~~----~~~l~~L~~~l~---~-----~--~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~ 232 (450)
T 2jdq_A 181 K---SPP------PEFAKV----SPCLNVLSWLLF---V-----S--D-----TDVLADACWALSYLSDGPNDKIQAVID 232 (450)
T ss_dssp S---SSC------CCGGGT----GGGHHHHHHHTT---C-----C--C-----HHHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred C---CCC------CCHHHH----HHHHHHHHHHHc---c-----C--C-----HHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 1 000 001111 233444444332 1 0 0 134555556666554321000
Q ss_pred -HHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccch-HHHHHHHHHhccCchhhhhhHHHHHHhHHHHH
Q 004414 435 -TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDF-SVIMQLVAVLSASRSEELKGFMHIVYRSLADV 512 (755)
Q Consensus 435 -~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l-~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ 512 (755)
..+..+...+ .+.+|.-+++++.+++.++.+........ + ..++..+..+..++.+ .+|..+ +++
T Consensus 233 ~~~i~~L~~ll-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~------~vr~~a-~~~ 299 (450)
T 2jdq_A 233 AGVCRRLVELL-----MHNDYKVVSPALRAVGNIVTGDDIQTQVI-LNCSALQSLLHLLSSPKE------SIKKEA-CWT 299 (450)
T ss_dssp TTTHHHHHHHT-----TCSCHHHHHHHHHHHHHHTTSCHHHHHHH-HTTTHHHHHHHHTTCSSH------HHHHHH-HHH
T ss_pred cCcHHHHHHHH-----CCCchhHHHHHHHHHHHHhhCChHHHHHH-HHCccHHHHHHHHcCCCH------HHHHHH-HHH
Confidence 0223333322 24679999999999999986533110000 0 1233333444445543 366666 599
Q ss_pred HHhhHHHHHhCccc----h-HHHHHHHHHhccc--CchHHHHHHHHHHHHHHhh-ccc---CCCchHHHHHHHHHHHHhc
Q 004414 513 IGSYSKWISAFQTN----A-RPLLLFLAAGISE--AVSSNACASALRKICEDAS-ALI---DEPSNLEILMWIGEALEKR 581 (755)
Q Consensus 513 ig~y~~~~~~~p~~----l-~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~-~~l---~~~~~~~~l~~~~~~l~~~ 581 (755)
+|.++.. +++. + ..+++.++..+.+ ++++..|+.++.+++.... ... .....++.|.. .+...
T Consensus 300 L~~l~~~---~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~---ll~~~ 373 (450)
T 2jdq_A 300 ISNITAG---NRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD---LLTVM 373 (450)
T ss_dssp HHHHTTS---CHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHH---GGGSS
T ss_pred HHHHHcC---CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH---HhcCC
Confidence 9988741 2211 1 1345555555544 5699999999999997632 111 00012222222 22112
Q ss_pred CCChhhHHHHHHHHHHHHc
Q 004414 582 HLPLEDEEEVVGAISLILG 600 (755)
Q Consensus 582 ~l~~~~~~~l~eai~~vi~ 600 (755)
+.+.+...+++++.++.
T Consensus 374 --~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 374 --DSKIVQVALNGLENILR 390 (450)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHH
Confidence 45667777777777765
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.15 E-value=0.041 Score=61.11 Aligned_cols=404 Identities=10% Similarity=0.050 Sum_probs=196.7
Q ss_pred HHHHHhhcCC--CCcHHHHHHHHHHHhhcCC-ChhHHHHH-hhhhhHHHhhhhhhcCCC-HHHHhHHHHHHHHHHHH---
Q 004414 243 LNFVFNSLQV--QSSFDVAIEVLVELVGRHE-GLPQALLC-RVPFLKELLLLPALTDGD-EKVIGGLACLMSEIGQA--- 314 (755)
Q Consensus 243 l~~~~~~L~~--~~~~~~a~~~l~eii~~~~-~~~~~l~~-~~~~l~~~~~~~~~~~~d-~e~~~~l~~l~~~l~e~--- 314 (755)
++.+.+.|.+ ++.+..|+.++..+++... +....++. +++ +.+. ..+.+.+ .+.....+..+..++..
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v---~~Lv-~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVV---PRFV-QFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCH---HHHH-HHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCH---HHHH-HHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 4455555654 3567788899999887654 33333332 222 2221 1334444 56656666666666642
Q ss_pred hhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHH--HHHHHHHH
Q 004414 315 APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFS--ALLDALLL 392 (755)
Q Consensus 315 ~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~Ll~~l~~ 392 (755)
....+.+ .+.++.++.+...+ +.++.+.++..+..+... .. ..+..+. ..++.++.
T Consensus 152 ~~~~~~~-----~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~----~~-----------~~~~~i~~~g~l~~Ll~ 209 (528)
T 4b8j_A 152 NTKVVID-----HGAVPIFVKLLGSS--SDDVREQAVWALGNVAGD----SP-----------KCRDLVLANGALLPLLA 209 (528)
T ss_dssp HHHHHHH-----TTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHT----CH-----------HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh-----CCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCC----Ch-----------hhHHHHHHCCcHHHHHH
Confidence 1222221 13667777777775 567888888777766542 11 0111111 13444444
Q ss_pred HhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCc-H-----HHHHHHHHHhhcCCCCCCChhhhHHHHHHHHh
Q 004414 393 RAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS-A-----TFIQKVFFGSWGSANVPIPWKEVETKLFALNV 466 (755)
Q Consensus 393 k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~-~-----~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~ 466 (755)
.+.-..+ ...|..+..++..++..-.. . ..+..+...+ .+.++.-++.++.+|+.
T Consensus 210 lL~~~~~--------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-----~~~~~~v~~~a~~aL~~ 270 (528)
T 4b8j_A 210 QLNEHTK--------------LSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI-----HSNDEEVLTDACWALSY 270 (528)
T ss_dssp TCCTTCC--------------HHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHT-----TCCCHHHHHHHHHHHHH
T ss_pred HHhcCCC--------------HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHH
Confidence 4321100 23355666677666543111 0 1233333322 24578889999999999
Q ss_pred hhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccch-----HHHHHHHHHhcccC
Q 004414 467 VSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA-----RPLLLFLAAGISEA 541 (755)
Q Consensus 467 iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l-----~~~l~~l~~~l~~p 541 (755)
+++..........-..++..+..+..++.+ .++..+ +++||..+. .++... ..+++.|+..+.++
T Consensus 271 l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~------~v~~~a-~~~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 271 LSDGTNDKIQAVIEAGVCPRLVELLLHPSP------SVLIPA-LRTVGNIVT---GDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp HTSSCHHHHHHHHHTTCHHHHHHHTTCSCH------HHHHHH-HHHHHHHTT---SCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHcCHHHHHHHHHcCCCh------hHHHHH-HHHHHHHHc---CCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 886532110000000122233333444443 255555 588888764 112111 23455555555544
Q ss_pred ---chHHHHHHHHHHHHHHhhc---ccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 004414 542 ---VSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARL 615 (755)
Q Consensus 542 ---~v~~~Aa~al~~l~~~c~~---~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l 615 (755)
.++..|+.++.+++..... .+.....++.|..+... . +.+.+...+.+++.+......+. ..++..
T Consensus 341 ~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~---~--~~~v~~~a~~aL~nl~~~~~~~~--~~~l~~- 412 (528)
T 4b8j_A 341 LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT---A--EFDIKKEAAWAISNATSGGSHDQ--IKYLVS- 412 (528)
T ss_dssp CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH---S--CHHHHHHHHHHHHHHHHHSCHHH--HHHHHH-
T ss_pred CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc---C--CHHHHHHHHHHHHHHHcCCCHHH--HHHHHH-
Confidence 5899999999999853322 11112244555555432 2 56788999999999987643332 222211
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHH--HHHHHHHHHH
Q 004414 616 LSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRV--FWPMLEKLFR 693 (755)
Q Consensus 616 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~--~~~~l~~i~~ 693 (755)
...+..|-.++... ++.. ...++..+. .+++..............+....+.+ .+..+..+..
T Consensus 413 -~~~i~~L~~lL~~~-------d~~v----~~~al~~L~---~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~ 477 (528)
T 4b8j_A 413 -EGCIKPLCDLLICP-------DIRI----VTVCLEGLE---NILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQS 477 (528)
T ss_dssp -TTCHHHHHHGGGCS-------CHHH----HHHHHHHHH---HHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGG
T ss_pred -CCCHHHHHHHHcCC-------CHHH----HHHHHHHHH---HHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHc
Confidence 12334444444432 1111 122333333 33322111000000123445555543 3555665543
Q ss_pred hhhccchHHHHHHHHHHHHHHHH-HhhhhHhhHHH
Q 004414 694 SEHMENGNLSTAACRALSLAIQS-SGQHFVTLLPQ 727 (755)
Q Consensus 694 ~~~~~~~~v~e~~~~~~~~~~~~-l~~~~~~~l~~ 727 (755)
..+.+|.+.+..++.+.+.. -++++.++++.
T Consensus 478 ---~~~~~v~~~a~~il~~~~~~e~~~~~~~~~~~ 509 (528)
T 4b8j_A 478 ---HDNNEIYEKAVKILEAYWMDEEDDTMGATTVA 509 (528)
T ss_dssp ---CSSHHHHHHHHHHHHHHCC-------------
T ss_pred ---CCCHHHHHHHHHHHHHHCCCcccccccccCCC
Confidence 25789999999999988874 44456566554
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.13 E-value=0.014 Score=65.04 Aligned_cols=330 Identities=10% Similarity=-0.022 Sum_probs=174.2
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCC---CcHHHHHHHHHHHhhcCCChhHHHH-Hhhhhh
Q 004414 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALL-CRVPFL 284 (755)
Q Consensus 209 ~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~---~~~~~a~~~l~eii~~~~~~~~~l~-~~~~~l 284 (755)
++.++..++.++..-+.... .-+...+....+++.+.+.|.++ +++..|+.++..+.....+....++ .+.+
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~--~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i-- 175 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREH--RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV-- 175 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSS--SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH--
T ss_pred CHHHHHHHHHHHHHHhCCCC--CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH--
Confidence 35678888888887765321 11222345677899999999865 4688899999998875433333332 1221
Q ss_pred HHHhhhhhhcCCCHHHHhHHHHHHHHHHHH---hhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHh
Q 004414 285 KELLLLPALTDGDEKVIGGLACLMSEIGQA---APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYI 361 (755)
Q Consensus 285 ~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~---~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l 361 (755)
+.+. ..+.+.+.+.....+..+..++.. ....+.. ...++.++.+...+ +.++...++..+..|...-
T Consensus 176 -~~Lv-~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-----~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 176 -PLFI-QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-----CNAMEPILGLFNSN--KPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp -HHHH-HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-----TTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHCCS
T ss_pred -HHHH-HHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-----cCcHHHHHHHhccC--CHHHHHHHHHHHHHHhCCC
Confidence 1111 133345777777777777777643 2222222 13566667776664 5567666666655555421
Q ss_pred hhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHH-----
Q 004414 362 LGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF----- 436 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~----- 436 (755)
+. .. -......+++.++..+.- . + ...|..+..++.+++.. .+..
T Consensus 247 ---~~-------~~---~~~~~~~~l~~L~~lL~~--------~--d-----~~v~~~a~~~L~~L~~~--~~~~~~~~~ 296 (530)
T 1wa5_B 247 ---KP-------QP---DWSVVSQALPTLAKLIYS--------M--D-----TETLVDACWAISYLSDG--PQEAIQAVI 296 (530)
T ss_dssp ---SS-------CC---CHHHHGGGHHHHHHHTTC--------C--C-----HHHHHHHHHHHHHHHSS--CHHHHHHHH
T ss_pred ---CC-------CC---cHHHHHhHHHHHHHHHcC--------C--C-----HHHHHHHHHHHHHHhCC--CHHHHHHHH
Confidence 00 00 011223344555544421 0 0 23455555566655431 1111
Q ss_pred ----HHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHH
Q 004414 437 ----IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADV 512 (755)
Q Consensus 437 ----l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ 512 (755)
+..+...+ .+.+|.-++.++.+++.++.+.........-..++..+..+..++.. .+|..+ +++
T Consensus 297 ~~~~v~~Lv~lL-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~------~vr~~A-~~a 364 (530)
T 1wa5_B 297 DVRIPKRLVELL-----SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE------NIKKEA-CWT 364 (530)
T ss_dssp HTTCHHHHHHGG-----GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH------HHHHHH-HHH
T ss_pred hcCcHHHHHHHH-----CCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCH------HHHHHH-HHH
Confidence 22222222 23579999999999999876432110000001233333344445443 367766 599
Q ss_pred HHhhHHHHHhCccch-----HHHHHHHHHhcc--cCchHHHHHHHHHHHHHHhhc--c----cCCCchHHHHHHHHHHHH
Q 004414 513 IGSYSKWISAFQTNA-----RPLLLFLAAGIS--EAVSSNACASALRKICEDASA--L----IDEPSNLEILMWIGEALE 579 (755)
Q Consensus 513 ig~y~~~~~~~p~~l-----~~~l~~l~~~l~--~p~v~~~Aa~al~~l~~~c~~--~----l~~~~~~~~l~~~~~~l~ 579 (755)
|+.++.. +++.. ..+++.|+..+. +++++..|+.++.+++..+.. . +.....++.|..+ +.
T Consensus 365 L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~l---l~ 438 (530)
T 1wa5_B 365 ISNITAG---NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDL---LE 438 (530)
T ss_dssp HHHHTTS---CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHH---TT
T ss_pred HHHHHcC---CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHH---Hh
Confidence 9988742 12111 123344444443 456999999999999987542 1 1000122222222 21
Q ss_pred hcCCChhhHHHHHHHHHHHHcc
Q 004414 580 KRHLPLEDEEEVVGAISLILGS 601 (755)
Q Consensus 580 ~~~l~~~~~~~l~eai~~vi~~ 601 (755)
. -+.+.+...+.+++.++..
T Consensus 439 ~--~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 439 I--ADNRIIEVTLDALENILKM 458 (530)
T ss_dssp T--CCHHHHHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHHHHHh
Confidence 1 2556677788888887754
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.03 E-value=0.11 Score=58.45 Aligned_cols=413 Identities=11% Similarity=0.060 Sum_probs=202.2
Q ss_pred ccCCChHHHHHHHHHHHHHhcChHHHHH----HHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 004414 17 NHDTESCNRVAANQWLVQFQQTDAAWEI----ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNA 92 (755)
Q Consensus 17 y~~~d~~~~~qA~~~L~~fq~s~~aw~~----~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~ 92 (755)
..++|+..|.-|-..|-.+. +++.++. ...+|.+. ++.||.-|+..+.+-.+..-..++. ..
T Consensus 95 L~~~n~~ir~~AL~~L~~i~-~~~~~~~l~~~l~~~L~d~------~~~VRk~A~~al~~i~~~~p~~~~~-------~~ 160 (591)
T 2vgl_B 95 CEDPNPLIRALAVRTMGCIR-VDKITEYLCEPLRKCLKDE------DPYVRKTAAVCVAKLHDINAQMVED-------QG 160 (591)
T ss_dssp SSSSSHHHHHHHHHHHHTCC-SGGGHHHHHHHHHHHSSCS------CHHHHHHHHHHHHHHHHSSCCCHHH-------HH
T ss_pred cCCCCHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHcCCC------ChHHHHHHHHHHHHHHhhChhhccc-------cc
Confidence 45689999999988888875 7777776 55566533 4699999999997766643221111 12
Q ss_pred HHHHHHHhc-CCChHHHHHHHHHHHHHHHHhc-c-cCc----hHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccc
Q 004414 93 LLVAAKRFS-SGPPQLLTQICLALSALILRAV-E-HGK----PIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQA 165 (755)
Q Consensus 93 Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~-~-W~~----~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~ 165 (755)
++..+...- .....|+..-..+|..+.-..+ . +-. .+..++..+... ++-....+++++..+..+
T Consensus 161 ~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~--~~~~q~~il~~l~~l~~~------ 232 (591)
T 2vgl_B 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC--TEWGQIFILDCLSNYNPK------ 232 (591)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHTSCCC------
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC--CchHHHHHHHHHHHhCCC------
Confidence 333333322 3445677777667776654432 1 222 255555555432 233334455555443311
Q ss_pred cccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhcccccc--Ccchhc--ccc
Q 004414 166 SDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI--SQGSLA--AHP 241 (755)
Q Consensus 166 ~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~--~~~~~~--~~~ 241 (755)
.+. ....+++.+...+++ .++.++..+.+|+...... + +.+.+. ...
T Consensus 233 -----~~~-----------~~~~~l~~l~~~l~~--------~~~~V~~ea~~~i~~l~~~-----~~~~~~~~~~~~~~ 283 (591)
T 2vgl_B 233 -----DDR-----------EAQSICERVTPRLSH--------ANSAVVLSAVKVLMKFLEL-----LPKDSDYYNMLLKK 283 (591)
T ss_dssp -----SHH-----------HHHHHHHHHTTCSCS--------STTHHHHHHHHHHHHSCCS-----CCBTTBSHHHHHHH
T ss_pred -----ChH-----------HHHHHHHHHHHHHcC--------CChHHHHHHHHHHHHHhhc-----cCCCHHHHHHHHHH
Confidence 111 123445555554543 2345776666666544321 1 111111 122
Q ss_pred hHHHHHhhc-CCCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHH
Q 004414 242 LLNFVFNSL-QVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIV 320 (755)
Q Consensus 242 ll~~~~~~L-~~~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~ 320 (755)
+.+.+...+ .+++++..|++.+..+...+.+.++..+ . .+. ...+++....+.-+.++..++
T Consensus 284 ~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~---~----~~~--~~~~d~~~Ir~~al~~L~~l~-------- 346 (591)
T 2vgl_B 284 LAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEI---K----VFF--VKYNDPIYVKLEKLDIMIRLA-------- 346 (591)
T ss_dssp THHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCT---T----TTS--CCTTSCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHH---H----hhe--eccCChHHHHHHHHHHHHHHC--------
Confidence 333333323 3456788999999999887654322111 0 111 112333333333333333332
Q ss_pred hcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCC
Q 004414 321 EASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESS 400 (755)
Q Consensus 321 ~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~ 400 (755)
+......++.-|+.+.... |.++...+..-...++ ..+.+.....++.++..+.-+.
T Consensus 347 -~~~nv~~iv~~L~~~l~~~--d~~~r~~~v~aI~~la------------------~~~~~~~~~~v~~Ll~ll~~~~-- 403 (591)
T 2vgl_B 347 -SQANIAQVLAELKEYATEV--DVDFVRKAVRAIGRCA------------------IKVEQSAERCVSTLLDLIQTKV-- 403 (591)
T ss_dssp -CSSTHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHHHTCC--
T ss_pred -ChhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH------------------HhChhHHHHHHHHHHHHHcccc--
Confidence 1223445666666666553 4444333332211111 1233344455555555443110
Q ss_pred CCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCc--HHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCcc
Q 004414 401 FNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAF 478 (755)
Q Consensus 401 ~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~--~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~ 478 (755)
+ ..|.++...+.++..-... +..+..+...+.. ...-.-..+++|++|-.++.+..
T Consensus 404 -----------~--~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~----~~~~~~~~~~~wilGey~~~~~~----- 461 (591)
T 2vgl_B 404 -----------N--YVVQEAIVVIRDIFRKYPNKYESIIATLCENLDS----LDEPDARAAMIWIVGEYAERIDN----- 461 (591)
T ss_dssp -----------H--HHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTT----CCSHHHHHHHHHHHHTTCTTCTT-----
T ss_pred -----------h--HHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHcccccccC-----
Confidence 0 1133344444444332221 1134444433221 22344567888888877665531
Q ss_pred chHHHHH-HHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhc-c---cCchHHHHHHHHHH
Q 004414 479 DFSVIMQ-LVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGI-S---EAVSSNACASALRK 553 (755)
Q Consensus 479 ~l~~i~~-ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l-~---~p~v~~~Aa~al~~ 553 (755)
.+.++. ++..+...+. .+|. .++..+.+++.++|+...+.+..++... . +++|+.+|...++-
T Consensus 462 -~~~~l~~l~~~~~~~~~-------~vr~----~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 462 -ADELLESFLEGFHDEST-------QVQL----TLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp -HHHHHHHHSTTCSSSCH-------HHHH----HHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHhhccCCH-------HHHH----HHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Confidence 133333 3333443332 2454 3444455555677876655666666543 2 35799998766554
Q ss_pred H
Q 004414 554 I 554 (755)
Q Consensus 554 l 554 (755)
+
T Consensus 530 l 530 (591)
T 2vgl_B 530 L 530 (591)
T ss_dssp T
T ss_pred H
Confidence 3
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.87 E-value=0.055 Score=60.05 Aligned_cols=329 Identities=9% Similarity=-0.009 Sum_probs=171.6
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCC---CcHHHHHHHHHHHhhcCCChhHHHHHhhhhhH
Q 004414 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALLCRVPFLK 285 (755)
Q Consensus 209 ~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~---~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~ 285 (755)
++.++..++.++...+.... .-+...+.....++.+.+.|.++ +++..|+.++..+.....+....++.. +..
T Consensus 87 ~~~~~~~A~~~L~~l~s~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~--g~i 162 (528)
T 4b8j_A 87 DNNLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH--GAV 162 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCSS--SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THH
T ss_pred CHHHHHHHHHHHHHHhcCCC--CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC--CcH
Confidence 35688888888888776321 11233455678899999999764 568889999999887654333333321 111
Q ss_pred HHhhhhhhcCCCHHHHhHHHHHHHHHHHHhh---HHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhh
Q 004414 286 ELLLLPALTDGDEKVIGGLACLMSEIGQAAP---SLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYIL 362 (755)
Q Consensus 286 ~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~---~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~ 362 (755)
+.+. ..+.+.+.+.....+..+..++.... ..+.+. ..++.++.+..... +..+...+......|...-
T Consensus 163 ~~L~-~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~-----g~l~~Ll~lL~~~~-~~~v~~~a~~~L~~L~~~~- 234 (528)
T 4b8j_A 163 PIFV-KLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLAN-----GALLPLLAQLNEHT-KLSMLRNATWTLSNFCRGK- 234 (528)
T ss_dssp HHHH-HHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHT-----TCHHHHHHTCCTTC-CHHHHHHHHHHHHHHHCSS-
T ss_pred HHHH-HHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHC-----CcHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCC-
Confidence 1221 23445677777777777777764321 122211 24566677763321 4556666665555444321
Q ss_pred hcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHH------
Q 004414 363 GLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF------ 436 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~------ 436 (755)
+. . -......+++.++..+.-+ + .+.|..+..++.+++. +.+..
T Consensus 235 --~~-------~----~~~~~~~~l~~L~~lL~~~-~--------------~~v~~~a~~aL~~l~~--~~~~~~~~~~~ 284 (528)
T 4b8j_A 235 --PQ-------P----SFEQTRPALPALARLIHSN-D--------------EEVLTDACWALSYLSD--GTNDKIQAVIE 284 (528)
T ss_dssp --SC-------C----CHHHHTTHHHHHHHHTTCC-C--------------HHHHHHHHHHHHHHTS--SCHHHHHHHHH
T ss_pred --CC-------C----cHHHHHHHHHHHHHHHCCC-C--------------HHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 10 0 0111234455555444211 0 1234444445554432 22211
Q ss_pred ---HHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccch-HHHHHHHHHhccCc-hhhhhhHHHHHHhHHHH
Q 004414 437 ---IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDF-SVIMQLVAVLSASR-SEELKGFMHIVYRSLAD 511 (755)
Q Consensus 437 ---l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l-~~i~~ll~~l~~~~-~~~~~~~~~v~~~t~~~ 511 (755)
+..+...+ .+.++.-.+.++.+|+.++.+........ + ..++..+..+..++ .+ .++..+ ++
T Consensus 285 ~g~v~~Lv~lL-----~~~~~~v~~~a~~~L~nl~~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~------~v~~~A-~~ 351 (528)
T 4b8j_A 285 AGVCPRLVELL-----LHPSPSVLIPALRTVGNIVTGDDAQTQCI-IDHQALPCLLSLLTQNLKK------SIKKEA-CW 351 (528)
T ss_dssp TTCHHHHHHHT-----TCSCHHHHHHHHHHHHHHTTSCHHHHHHH-HTTTHHHHHHHHHHSCCCH------HHHHHH-HH
T ss_pred cCHHHHHHHHH-----cCCChhHHHHHHHHHHHHHcCCHHHHHHH-HHhhhHHHHHHHHcCCCcH------HHHHHH-HH
Confidence 12222222 23468889999999999876432110000 0 11223333333344 32 256665 59
Q ss_pred HHHhhHHHHHhCc---------cchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhh-cc---cCCCchHHHHHHHHHHH
Q 004414 512 VIGSYSKWISAFQ---------TNARPLLLFLAAGISEAVSSNACASALRKICEDAS-AL---IDEPSNLEILMWIGEAL 578 (755)
Q Consensus 512 ~ig~y~~~~~~~p---------~~l~~~l~~l~~~l~~p~v~~~Aa~al~~l~~~c~-~~---l~~~~~~~~l~~~~~~l 578 (755)
+|+.++. .++ ..++.++..+-.+ +++++..|+.++.+++.... .. +.....++.|..+ +
T Consensus 352 ~L~nl~~---~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l---L 423 (528)
T 4b8j_A 352 TISNITA---GNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL---L 423 (528)
T ss_dssp HHHHHHT---SCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG---G
T ss_pred HHHHHHC---CCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH---H
Confidence 9998874 122 2334444433332 46699999999999997732 11 1001122333332 2
Q ss_pred HhcCCChhhHHHHHHHHHHHHccC
Q 004414 579 EKRHLPLEDEEEVVGAISLILGSV 602 (755)
Q Consensus 579 ~~~~l~~~~~~~l~eai~~vi~~~ 602 (755)
.. -+.+.+..++++++.++...
T Consensus 424 ~~--~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 424 IC--PDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp GC--SCHHHHHHHHHHHHHHHHHH
T ss_pred cC--CCHHHHHHHHHHHHHHHHHH
Confidence 22 25567888888888887653
No 30
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.78 E-value=0.14 Score=61.51 Aligned_cols=254 Identities=11% Similarity=0.044 Sum_probs=137.4
Q ss_pred ChhhhHHHHHHHHhhhhhccccCCccchHHHHHH-HHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHH----------
Q 004414 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQL-VAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS---------- 521 (755)
Q Consensus 453 ~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~l-l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~---------- 521 (755)
.-.-+-+++++++.+++.+.++ . +..++.. +..+. ++.. .|+..+ |.++.++++-..
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~---~-l~~~l~~l~~~L~-d~~~------~V~~~A-~~Al~~~~~~~~~~~~~~~~~~ 538 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKA---Q-LIELMPILATFLQ-TDEY------VVYTYA-AITIEKILTIRESNTSPAFIFH 538 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHH---H-HHHHHHHHHHHTT-CSCH------HHHHHH-HHHHHHHTTCBSCSSSCCBSSC
T ss_pred CceehHHHHHHHHHHHhhCCHH---H-HHHHHHHHHHHhC-CCCh------hHHHHH-HHHHHHHHhccccccccccccc
Confidence 4556778899999999876421 1 3555554 34443 4432 255554 699998775321
Q ss_pred h--CccchHHHHHHHHHhcccC-----c--hHHHHHHHHHHHHHHhhcccCCCchHHHHHH-HHHHHH---hcCCChhhH
Q 004414 522 A--FQTNARPLLLFLAAGISEA-----V--SSNACASALRKICEDASALIDEPSNLEILMW-IGEALE---KRHLPLEDE 588 (755)
Q Consensus 522 ~--~p~~l~~~l~~l~~~l~~p-----~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~-~~~~l~---~~~l~~~~~ 588 (755)
. -..+++++++.++..+... + ....+..++..+++.....+. | |.+.+.. +...+. ...-+..-+
T Consensus 539 ~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~-p-~~~~l~~~L~~~l~~~~~~~~~~~~~ 616 (960)
T 1wa5_C 539 KEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQ-P-LFPQLLAQFIEIVTIMAKNPSNPRFT 616 (960)
T ss_dssp GGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTG-G-GHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 0 1246788888888777653 1 457888999999998888774 5 5544433 333222 122233456
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhh---------
Q 004414 589 EEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTV--------- 659 (755)
Q Consensus 589 ~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~--------- 659 (755)
..+++++|.++.+...+.. ..+.+.+++++..- ++.... +-..+ +...+..+...
T Consensus 617 ~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~i----L~~~~~-----~~~~~------~~~i~~~l~~~~~~~~~~~~ 680 (960)
T 1wa5_C 617 HYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTV----FSEDIQ-----EFIPY------VFQIIAFVVEQSATIPESIK 680 (960)
T ss_dssp HHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHH----HHTTCT-----TTHHH------HHHHHHHHHHHCSSCCTTTG
T ss_pred HHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHH----HHhhhH-----hhHHH------HHHHHHHHHHhccCCCHHHH
Confidence 6799999999998555433 44455555433333 332211 00001 11122222111
Q ss_pred --ccccc--ccCCCCCCCCchHHHHHHHHH----------HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhh-hHhh
Q 004414 660 --FSHLP--VPLPTNPAGDDPIFALLRVFW----------PMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQH-FVTL 724 (755)
Q Consensus 660 --f~~l~--~~~~~~~~~~~p~~~~~~~~~----------~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~~-~~~~ 724 (755)
|..+. ...+. .+.-..+.+.++.+. +.+..++.. ...+...-+.+|.+++.++..+|.+ +.||
T Consensus 681 ~~~~~l~~~~~~~~-~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~a~~ll~~i~~~~~~~~~~~y 758 (960)
T 1wa5_C 681 PLAQPLLAPNVWEL-KGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQR-LIASKAYEVHGFDLLEHIMLLIDMNRLRPY 758 (960)
T ss_dssp GGHHHHTSGGGGCC-TTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHH-HHTCTTTHHHHHHHHHHHHHHSCHHHHGGG
T ss_pred HHHHHHcCHHHhcC-CCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHH-HhCCCcccchHHHHHHHHHHHCCHHHHHHH
Confidence 11111 00000 011111222232221 222222321 1111112267999999999999999 9999
Q ss_pred HHHHHHHHHHHHhh
Q 004414 725 LPQVLDCLSTNFVS 738 (755)
Q Consensus 725 l~~~~~~l~~~f~~ 738 (755)
+|++++.+++....
T Consensus 759 l~~i~~~l~~~l~~ 772 (960)
T 1wa5_C 759 IKQIAVLLLQRLQN 772 (960)
T ss_dssp HHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987655
No 31
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.72 E-value=0.094 Score=58.22 Aligned_cols=334 Identities=12% Similarity=0.062 Sum_probs=161.7
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCC---CCcHHHHHHHHHHHhhcCCChhHHHHH-hhhhh
Q 004414 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQALLC-RVPFL 284 (755)
Q Consensus 209 ~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~---~~~~~~a~~~l~eii~~~~~~~~~l~~-~~~~l 284 (755)
+.+.+..+++++..-+.... +-|.+.+.....++.+.++|.. +++...|+-+|..+.....+..+.++. +.+
T Consensus 89 d~~~q~~a~~~~rklLs~~~--~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gai-- 164 (529)
T 3tpo_A 89 NLESQLQATQAARKLLSREK--QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI-- 164 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSSS--CCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH--
T ss_pred CHHHHHHHHHHHHHHHcCCC--CchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH--
Confidence 35566777777776654331 2344557788899999999964 346778888999887655433333332 111
Q ss_pred HHHhhhhhhcCCCHHHHhHHHHHHHHHHHH---hhHHHHhcChhHHHHHHHHHhcccCCCCCcch-hhhcH--HHHHHHH
Q 004414 285 KELLLLPALTDGDEKVIGGLACLMSEIGQA---APSLIVEASPEALALADALLSCVAFPSEDWEI-ADSTL--QFWSTLA 358 (755)
Q Consensus 285 ~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~---~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v-~~~~~--~FW~~l~ 358 (755)
+.+. ..+.+.+.+.....+..+..++.. +-..+.+. +.+..++.+...+ +.+. ..... -.|. +.
T Consensus 165 -p~Lv-~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~-----g~i~~Ll~lL~~~--~~~~~~~~~~~~a~~~-L~ 234 (529)
T 3tpo_A 165 -PAFI-SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKH-----GAIDPLLALLAVP--DLSTLACGYLRNLTWT-LS 234 (529)
T ss_dssp -HHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHTTCSS--CGGGSCHHHHHHHHHH-HH
T ss_pred -HHHH-HHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHc-----CCcHHHHHHHhcc--chhHhHHHHHHHHHHH-HH
Confidence 1111 234566777777666666666532 22222221 2455666666664 2221 11111 1121 11
Q ss_pred HHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHH--
Q 004414 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF-- 436 (755)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~-- 436 (755)
. +..... . ..-......+++.+++.+..+.+ +.+.+....+.+++. +++..
T Consensus 235 n-l~~~~~-------~--~~~~~~~~~~lp~L~~LL~~~~~---------------~v~~~a~~aL~~l~~--~~~~~~~ 287 (529)
T 3tpo_A 235 N-LCRNKN-------P--APPLDAVEQILPTLVRLLHHNDP---------------EVLADSCWAISYLTD--GPNERIE 287 (529)
T ss_dssp H-HHCCCT-------T--CCCHHHHHHHHHHHHHHTTSSCH---------------HHHHHHHHHHHHHHS--SCHHHHH
T ss_pred H-HHhccc-------c--hhhHHHHhhHHHHHHHHhcCCcH---------------HHHHHHHHHHHHhhh--hhhhhHH
Confidence 1 111010 0 00111233455555554432111 123444444444332 12111
Q ss_pred -------HHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHH
Q 004414 437 -------IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSL 509 (755)
Q Consensus 437 -------l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~ 509 (755)
+..+.. +. .+.++.-.+.++.+++.++.+-........-...+..+..+..++.+ .++..+
T Consensus 288 ~v~~~g~i~~Lv~-lL----~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~------~i~~~a- 355 (529)
T 3tpo_A 288 MVVKKGVVPQLVK-LL----GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------NIQKEA- 355 (529)
T ss_dssp HHHTTTCHHHHHH-HH----TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSH------HHHHHH-
T ss_pred HHHhccchHHHHH-Hh----cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCH------HHHHHH-
Confidence 122222 22 23567888899999998875422100000000112223334455554 256665
Q ss_pred HHHHHhhHHHHHhCccch--HHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhcc----cCCCchHHHHHHHHHHHHhc
Q 004414 510 ADVIGSYSKWISAFQTNA--RPLLLFLAAGISE--AVSSNACASALRKICEDASAL----IDEPSNLEILMWIGEALEKR 581 (755)
Q Consensus 510 ~~~ig~y~~~~~~~p~~l--~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~----l~~~~~~~~l~~~~~~l~~~ 581 (755)
+|+++..+..-..+.+.+ ..+++.++..+.+ ++++..|+.|+.+++..+... +.....++.|..+..
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~----- 430 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS----- 430 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-----
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc-----
Confidence 599998764211111111 1345556665554 458999999999999765422 111112333333321
Q ss_pred CCChhhHHHHHHHHHHHHc
Q 004414 582 HLPLEDEEEVVGAISLILG 600 (755)
Q Consensus 582 ~l~~~~~~~l~eai~~vi~ 600 (755)
.-+.+.+..+++++..++.
T Consensus 431 ~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 431 AKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 1244556666666666654
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.58 E-value=1.7 Score=50.53 Aligned_cols=289 Identities=14% Similarity=0.052 Sum_probs=147.1
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhc---ChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChH
Q 004414 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (755)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~qA~~~L~~fq~---s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~ 84 (755)
.+...++.|.+ ++...|..+-+.|....+ ...+|.....+|.+. +..+|--|+.+|.+-.... +
T Consensus 116 ~i~~lv~~L~~-~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~------d~~vr~~A~~~L~~L~~~~------~ 182 (780)
T 2z6g_A 116 AHPTNVQRLAE-PSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKE------A 182 (780)
T ss_dssp ----------C-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHTSH------H
T ss_pred cHHHHHHHhcC-ccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCC------CHHHHHHHHHHHHHHhCCC------h
Confidence 35666666653 466666666666553211 266788888899754 3589999999997744421 1
Q ss_pred HHH------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc-----ccCchHHHHHHHhhcccCCCchhHHHHHHH
Q 004414 85 AKD------ALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-----EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (755)
Q Consensus 85 ~~~------~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~-----~W~~~i~~li~~~~~~~~~~~~~~~lL~iL 153 (755)
.+. .+-..|++.|.. .....++...+.+|..+..... .-...++.++..+.+. ++......+..|
T Consensus 183 ~~~~i~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL 258 (780)
T 2z6g_A 183 SRHAIMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP--VDSVLFHAITTL 258 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHH
T ss_pred hHHHHHhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 221 223333444432 2256677777778877654311 1125677777777653 233444555555
Q ss_pred hhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccC
Q 004414 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (755)
Q Consensus 154 ~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~ 233 (755)
..|...-. ..|..+. ...++..|.+.+.+. +..++..++.|+..|.. ++ .-.
T Consensus 259 ~nLa~~~~-----------~~~~~v~------~~g~v~~Lv~lL~~~--------~~~v~~~a~~aL~~La~-~~--~e~ 310 (780)
T 2z6g_A 259 HNLLLHQE-----------GAKMAVR------LAGGLQKMVALLNKT--------NVKFLAITTDCLQILAY-GN--QES 310 (780)
T ss_dssp HHHHHHST-----------THHHHHH------HTTHHHHHHHGGGCC--------CHHHHHHHHHHHHHHHT-TC--HHH
T ss_pred HHHhCCCh-----------hhHHHHH------HcCCHHHHHHHHhcC--------CHHHHHHHHHHHHHHhc-CC--hHH
Confidence 55554321 1111111 123455566666542 34678888999998874 10 000
Q ss_pred cchhcccchHHHHHhhcCCCC---cHHHHHHHHHHHhhcCCChhHHHHH-hhhhhHHHhhhhhhcCCCHHHHhHHHHHHH
Q 004414 234 QGSLAAHPLLNFVFNSLQVQS---SFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (755)
Q Consensus 234 ~~~~~~~~ll~~~~~~L~~~~---~~~~a~~~l~eii~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~ 309 (755)
...+.....++.+...|.+.+ ....++.++..+.. .......++. +++ +.+. ..+.+.+.+..+..+..+.
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l---~~Ll-~lL~~~~~~~~~~a~~~L~ 385 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGM---QALG-LHLTDPSQRLVQNCLWTLR 385 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHH---HHHG-GGTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchH---HHHH-HHHcCCchHHHHHHHHHHH
Confidence 111234456777777777543 34456666665553 3333333321 111 1222 2344556677777777666
Q ss_pred HHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHH
Q 004414 310 EIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQF 353 (755)
Q Consensus 310 ~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~F 353 (755)
.++..... ......+++.++.+...+ +.++.+.+...
T Consensus 386 ~L~~~~~~-----~~~~~~~i~~Lv~lL~~~--d~~vr~~A~~a 422 (780)
T 2z6g_A 386 NLSDAATK-----QEGMEGLLGTLVQLLGSD--DINVVTCAAGI 422 (780)
T ss_dssp HHHTTCTT-----CSCCHHHHHHHHHHTTCS--CHHHHHHHHHH
T ss_pred HHhccchh-----hhhhhhHHHHHHHHHcCC--CHHHHHHHHHH
Confidence 66543321 111245677777777664 55666555443
No 33
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.50 E-value=2.3 Score=50.90 Aligned_cols=194 Identities=8% Similarity=0.033 Sum_probs=106.9
Q ss_pred HHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhccc-------CchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHH
Q 004414 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE-------AVSSNACASALRKICEDASALIDEPSNLEILMWIGE 576 (755)
Q Consensus 504 v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~-------p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~ 576 (755)
.|..+ ..++...+.-+ ..+.++.+++++-..+.. ...+.+|..++..+++.|..... ..++.++.+..
T Consensus 437 ~R~~~-~~~l~~~~~~~--~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~--~~l~~l~~~l~ 511 (971)
T 2x1g_F 437 YRQDI-SDTFMYCYDVL--NDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK--RQIPRLMRVLA 511 (971)
T ss_dssp HHHHH-HHHHHHHHTTC--TTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------CHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHH--hHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh--HHHHHHHHHHH
Confidence 45444 36665544311 235667777777665542 23678999999999988886542 36666666554
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhh
Q 004414 577 ALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRM 656 (755)
Q Consensus 577 ~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L 656 (755)
.+......+..|...+..+|+....+... .+++..+++-++..+ + . . . . ..++..+..+
T Consensus 512 ~l~~~d~~~~vr~~a~~~l~~~~~~l~~~---~~~l~~vl~~l~~~l----~-~-~--v-~---------~~A~~al~~l 570 (971)
T 2x1g_F 512 EIPYEKLNVKLLGTALETMGSYCNWLMEN---PAYIPPAINLLVRGL----N-S-S--M-S---------AQATLGLKEL 570 (971)
T ss_dssp HSCTTTSCHHHHHHHHHHHHHTHHHHC-------CHHHHHHHHHHHH----H-S-S--C-H---------HHHHHHHHHH
T ss_pred hcCccccCHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHh----C-h-H--H-H---------HHHHHHHHHH
Confidence 44311124556788888888877655432 244555555555544 2 1 0 0 0 1123333333
Q ss_pred hhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHh-hhhHhhHHHHHHHHHHH
Q 004414 657 GTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-QHFVTLLPQVLDCLSTN 735 (755)
Q Consensus 657 ~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~-~~~~~~l~~~~~~l~~~ 735 (755)
. +.+. ..+.+.+..++..+..++.. -.-+....+.+..++..++.+.+ .+..|++..+++.+.+.
T Consensus 571 ~---~~~~----------~~l~p~~~~ll~~l~~~l~~-~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~ 636 (971)
T 2x1g_F 571 C---RDCQ----------LQLKPYADPLLNACHASLNT-GRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEE 636 (971)
T ss_dssp H---HHCH----------HHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHH
T ss_pred H---HHHH----------HhccccHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3 2211 22456667777777777762 22356778888888888888764 55666666666666655
Q ss_pred Hh
Q 004414 736 FV 737 (755)
Q Consensus 736 f~ 737 (755)
+.
T Consensus 637 l~ 638 (971)
T 2x1g_F 637 LQ 638 (971)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.43 E-value=0.048 Score=60.59 Aligned_cols=306 Identities=11% Similarity=-0.016 Sum_probs=160.7
Q ss_pred HHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCC--CCcHHHHHHHHHH
Q 004414 188 MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV--QSSFDVAIEVLVE 265 (755)
Q Consensus 188 ~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~e 265 (755)
.++..|.+.+.+.. ++.++..++.++.+-..... . ....+.....++.+...|.+ ++++..|+.++..
T Consensus 130 g~i~~Lv~~L~~~~-------~~~v~~~A~~~L~~l~~~~~--~-~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~ 199 (530)
T 1wa5_B 130 GVVPRLVEFMRENQ-------PEMLQLEAAWALTNIASGTS--A-QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199 (530)
T ss_dssp TCHHHHHHTTSTTS-------CHHHHHHHHHHHHHHTTSCH--H-HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCC-------CHHHHHHHHHHHHHHhCCCH--H-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34555555555421 35688888888876654210 0 01123345677778877764 4678899999999
Q ss_pred HhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHh---hHHHHhcChhHHHHHHHHHhcccCCCC
Q 004414 266 LVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAA---PSLIVEASPEALALADALLSCVAFPSE 342 (755)
Q Consensus 266 ii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~---~~~l~~~~~~~~~ll~~ll~~~~~p~~ 342 (755)
+..........++.. +..+.+. ..+.+.+.+.....+..+..++... .... ....+++.++.+..++
T Consensus 200 l~~~~~~~~~~~~~~--~~l~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-----~~~~~l~~L~~lL~~~-- 269 (530)
T 1wa5_B 200 VAGDSTDYRDYVLQC--NAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS-----VVSQALPTLAKLIYSM-- 269 (530)
T ss_dssp HHTTCHHHHHHHHHT--TCHHHHH-HGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH-----HHGGGHHHHHHHTTCC--
T ss_pred HhCCCccchHHHHHc--CcHHHHH-HHhccCCHHHHHHHHHHHHHHhCCCCCCCcHH-----HHHhHHHHHHHHHcCC--
Confidence 887543333333221 1111221 1334466777777777777766421 0000 1135677777777775
Q ss_pred CcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHH-HHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHh
Q 004414 343 DWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVF-SALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLV 421 (755)
Q Consensus 343 d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~ 421 (755)
+.++...++.....+... ..+ . ...++ ..+++.++..+.-+ + ...|..+.
T Consensus 270 d~~v~~~a~~~L~~L~~~----~~~------~----~~~~~~~~~v~~Lv~lL~~~----------~-----~~v~~~a~ 320 (530)
T 1wa5_B 270 DTETLVDACWAISYLSDG----PQE------A----IQAVIDVRIPKRLVELLSHE----------S-----TLVQTPAL 320 (530)
T ss_dssp CHHHHHHHHHHHHHHHSS----CHH------H----HHHHHHTTCHHHHHHGGGCS----------C-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CHH------H----HHHHHhcCcHHHHHHHHCCC----------C-----hhhHHHHH
Confidence 556666666555444432 110 0 01111 13444555544311 0 12354454
Q ss_pred HHHHHHHHhcCcHH---------HHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCC----ccchHHHHHHHH
Q 004414 422 ELLVDICQLLRSAT---------FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQ----AFDFSVIMQLVA 488 (755)
Q Consensus 422 d~l~~~~~~l~~~~---------~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~----~~~l~~i~~ll~ 488 (755)
.++..++. +.+. .+..+...+ .+.+|.-.+.++++++.++.+...... ...++.++.++.
T Consensus 321 ~~L~~l~~--~~~~~~~~~~~~~~l~~L~~lL-----~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 393 (530)
T 1wa5_B 321 RAVGNIVT--GNDLQTQVVINAGVLPALRLLL-----SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 393 (530)
T ss_dssp HHHHHHTT--SCHHHHHHHHHTTHHHHHHHHT-----TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHc--CCHHHHHHHHHcchHHHHHHHH-----cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 55554432 2111 222232222 234799999999999999864321100 001233333332
Q ss_pred HhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchH-----HHHHHHHHhccc--CchHHHHHHHHHHHHHHhhc
Q 004414 489 VLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR-----PLLLFLAAGISE--AVSSNACASALRKICEDASA 560 (755)
Q Consensus 489 ~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~-----~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~ 560 (755)
++.+ .++..+ +++|+.++......|+... .+++.|+..+.+ ++++..|+.++.+++..+..
T Consensus 394 ----~~~~------~v~~~a-~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 394 ----VAEY------KTKKEA-CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp ----HSCH------HHHHHH-HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCCH------HHHHHH-HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 2222 256666 5999988764321112211 255666666654 56899999999999988764
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.37 E-value=0.064 Score=59.26 Aligned_cols=332 Identities=11% Similarity=0.053 Sum_probs=163.3
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCC---CcHHHHHHHHHHHhhcCCChhHHHHH-hhhhh
Q 004414 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALLC-RVPFL 284 (755)
Q Consensus 209 ~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~---~~~~~a~~~l~eii~~~~~~~~~l~~-~~~~l 284 (755)
+.+.+..+.+.+..-+.... +-|++.++....++.+.++|... ++...|+-+|..+.+...+..+.++. +.+
T Consensus 70 d~~~q~~a~~~~rklls~e~--~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaI-- 145 (510)
T 3ul1_B 70 NLESQLQATQAARKLLSREK--QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI-- 145 (510)
T ss_dssp CHHHHHHHHHHHHHHHTCSS--CCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH--
T ss_pred CHHHHHHHHHHHHHHhcCCC--CchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCH--
Confidence 35677778787777665432 33556677888999999999743 46778999999987655443344442 111
Q ss_pred HHHhhhhhhcCCCHHHHhHHHHHHHHHHHH---hhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHh
Q 004414 285 KELLLLPALTDGDEKVIGGLACLMSEIGQA---APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYI 361 (755)
Q Consensus 285 ~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~---~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l 361 (755)
+.+. ..+.+.+.+..+..+..+..++.. +-..+.+. +.+..++.+...+ +.+. ....+.......+
T Consensus 146 -p~Lv-~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~-----G~i~~Ll~lL~~~--~~~~--~~~~~~~~a~~~L 214 (510)
T 3ul1_B 146 -PAFI-SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH-----GAIDPLLALLAVP--DLST--LACGYLRNLTWTL 214 (510)
T ss_dssp -HHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHHTCSS--CGGG--SCHHHHHHHHHHH
T ss_pred -HHHH-HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHc-----CChHHHHHHHHhc--cchh--hhHHHHHHHHHHH
Confidence 1111 244566777777777777666532 22222221 2345555655554 2221 1111111111111
Q ss_pred hhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHHH-----
Q 004414 362 LGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF----- 436 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~----- 436 (755)
..+... ... ..-......+++.+.+.+..+. .+.|.....++.+++. +++..
T Consensus 215 ~nl~~~----~~~--~~~~~~~~~~lp~L~~LL~~~~---------------~~v~~~A~~aL~~L~~--~~~~~~~~i~ 271 (510)
T 3ul1_B 215 SNLCRN----KNP--APPLDAVEQILPTLVRLLHHND---------------PEVLADSCWAISYLTD--GPNERIEMVV 271 (510)
T ss_dssp HHHHCC----CSS--CCCHHHHHHHHHHHHHHTTCSC---------------HHHHHHHHHHHHHHTS--SCHHHHHHHH
T ss_pred HHHhhc----ccc--hhHHHHHHhHHHHHHHHHhcCC---------------HHHHHHHHHHHHHHhh--chhhhHHHHH
Confidence 100000 000 0011122345555555442110 1124444444444332 11111
Q ss_pred ----HHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHH-----HHHHHhccCchhhhhhHHHHHHh
Q 004414 437 ----IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIM-----QLVAVLSASRSEELKGFMHIVYR 507 (755)
Q Consensus 437 ----l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~-----~ll~~l~~~~~~~~~~~~~v~~~ 507 (755)
+..+.. +. .+.+..-.+.++.+++.++.+-... ...+. ..+..+..++.+ .++..
T Consensus 272 ~~g~i~~Lv~-lL----~~~~~~v~~~al~aL~nl~~~~~~~-----~~~i~~~g~l~~L~~LL~~~~~------~v~~~ 335 (510)
T 3ul1_B 272 KKGVVPQLVK-LL----GATELPIVTPALRAIGNIVTGTDEQ-----TQKVIDAGALAVFPSLLTNPKT------NIQKE 335 (510)
T ss_dssp TTTCHHHHHH-HH----TCSCHHHHHHHHHHHHHHTTSCHHH-----HHHHHHTTGGGGCC-CTTCSSH------HHHHH
T ss_pred hcccchhhhh-hh----cCCChhhhhHHHHHHHHhhcCCHHH-----HHHHhhccchHHHHHHhcCCCH------HHHHH
Confidence 122222 22 2356778888999998886432210 01111 112223345543 35666
Q ss_pred HHHHHHHhhHHHHHhCccch--HHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhcc----cCCCchHHHHHHHHHHHH
Q 004414 508 SLADVIGSYSKWISAFQTNA--RPLLLFLAAGISE--AVSSNACASALRKICEDASAL----IDEPSNLEILMWIGEALE 579 (755)
Q Consensus 508 t~~~~ig~y~~~~~~~p~~l--~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~----l~~~~~~~~l~~~~~~l~ 579 (755)
+ +|+++..+..-..+.+.+ ..+++.++..+.+ ++++..|+.|+.+++..+... +.....++.|..+..
T Consensus 336 A-~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~--- 411 (510)
T 3ul1_B 336 A-TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS--- 411 (510)
T ss_dssp H-HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG---
T ss_pred H-HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc---
Confidence 6 599998764211111111 1355566666654 458999999999999765432 111112333333321
Q ss_pred hcCCChhhHHHHHHHHHHHHc
Q 004414 580 KRHLPLEDEEEVVGAISLILG 600 (755)
Q Consensus 580 ~~~l~~~~~~~l~eai~~vi~ 600 (755)
.-+.+.+..+++++..++.
T Consensus 412 --~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 412 --AKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp --CSCHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHH
Confidence 1245566677777777664
No 36
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.80 E-value=2.3 Score=45.41 Aligned_cols=296 Identities=14% Similarity=0.070 Sum_probs=168.0
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHhcC----------hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCC
Q 004414 12 AVHVLNHDTESCNRVAANQWLVQFQQT----------DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (755)
Q Consensus 12 av~~ly~~~d~~~~~qA~~~L~~fq~s----------~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l 81 (755)
.++.|-+..++..|..|-..|..+-.. ..+......+|.+. +..+|..|+.+|.+-...
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~------~~~vr~~a~~~L~~l~~~----- 137 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE------FEDVQEQAVWALGNIAGD----- 137 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC------CHHHHHHHHHHHHHHccC-----
Confidence 344443333788888888888887652 23556667777654 368999999999876543
Q ss_pred ChHHHHHH-HHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHh-c-----ccCchHHHHHHHhhcccCCCchhHHHHHH
Q 004414 82 QSAAKDAL-LNALLVAAKRFSS--GPPQLLTQICLALSALILRA-V-----EHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (755)
Q Consensus 82 ~~~~~~~L-r~~Ll~~l~~~~~--~~~~v~~kL~~~la~l~~~~-~-----~W~~~i~~li~~~~~~~~~~~~~~~lL~i 152 (755)
+++.+..+ ...++..+..... .+..++...+.+|+.+.... + .-...++.++..+... ++......+..
T Consensus 138 ~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~ 215 (450)
T 2jdq_A 138 STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS--DTDVLADACWA 215 (450)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHH
Confidence 22333322 2234444444322 45678888888998887543 1 1245677788777642 33334445556
Q ss_pred HhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhcccccc
Q 004414 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (755)
Q Consensus 153 L~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~ 232 (755)
|..+.+.. ...+..+ .. ..++..+.+.+.+ ++..++..++.++.+-.... .-
T Consensus 216 L~~l~~~~-----------~~~~~~~----~~--~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~---~~ 267 (450)
T 2jdq_A 216 LSYLSDGP-----------NDKIQAV----ID--AGVCRRLVELLMH--------NDYKVVSPALRAVGNIVTGD---DI 267 (450)
T ss_dssp HHHHTSSS-----------HHHHHHH----HH--TTTHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSC---HH
T ss_pred HHHHHCCC-----------cHHHHHH----HH--cCcHHHHHHHHCC--------CchhHHHHHHHHHHHHhhCC---hH
Confidence 65555421 1111111 11 2234444455543 23568888888887655411 00
Q ss_pred CcchhcccchHHHHHhhcCCC--CcHHHHHHHHHHHhhcCCChhHHHHH-hhhhhHHHhhhhhhcCCCHHHHhHHHHHHH
Q 004414 233 SQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (755)
Q Consensus 233 ~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~ 309 (755)
....+.....++.+.+.|.++ .++..|+.++..+.....+..+.++. +++ +.+. ..+.+++.+.....+..+.
T Consensus 268 ~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l---~~L~-~~l~~~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF---PALI-SILQTAEFRTRKEAAWAIT 343 (450)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH---HHHH-HHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH---HHHH-HHHhcCCHHHHHHHHHHHH
Confidence 011133456888888888865 46888999998887654333333331 221 1221 1334556777777777777
Q ss_pred HHHHH----hhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHH
Q 004414 310 EIGQA----APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (755)
Q Consensus 310 ~l~e~----~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~ 359 (755)
.++.. ....+.+ ..+++.++.+...+ +.++...++.....+.+
T Consensus 344 ~l~~~~~~~~~~~l~~-----~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 344 NATSGGSAEQIKYLVE-----LGCIKPLCDLLTVM--DSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHCCHHHHHHHHH-----HTCHHHHHHGGGSS--CHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH-----CCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 77643 2222221 23666777777764 56677666666555554
No 37
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.52 E-value=4.3 Score=45.68 Aligned_cols=301 Identities=12% Similarity=0.051 Sum_probs=143.3
Q ss_pred hhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCC--CCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhHH
Q 004414 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKE 286 (755)
Q Consensus 209 ~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~ 286 (755)
++.++..|++++.+-.. . .+ ...+++.+..+|.+ +.++.+|+-|+..+...+.+..+.+++.+.
T Consensus 120 n~~vr~lAL~~L~~i~~--------~-~~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~---- 185 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGS--------S-EM-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATK---- 185 (618)
T ss_dssp SSHHHHHHHHHHHHHCC--------H-HH-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTT----
T ss_pred CHhHHHHHHHHHHhcCC--------H-HH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHH----
Confidence 45688899998876421 1 11 23567777777765 457889999999998877654432222221
Q ss_pred HhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhccc--CCCCCcchhhhcHHHHHH--HHHHhh
Q 004414 287 LLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVA--FPSEDWEIADSTLQFWST--LASYIL 362 (755)
Q Consensus 287 ~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~--~p~~d~~v~~~~~~FW~~--l~~~l~ 362 (755)
..+.+.|..+....+.++.++++........-....-.++..|-.+.. .+ .++++.... +=|.. +.+.+.
T Consensus 186 ----~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~-~~~~~~~~~-~~~~q~~il~~L~ 259 (618)
T 1w63_A 186 ----NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYS-PEHDVSGIS-DPFLQVRILRLLR 259 (618)
T ss_dssp ----TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCC-TTTCSSSSS-CHHHHHHHHHHHH
T ss_pred ----HHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCC-ccccccCCC-CChHHHHHHHHHH
Confidence 245567777777777888887765433210000111223443333321 11 122222111 11221 111111
Q ss_pred hcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHhHHHHHHHHhcCcHH----HHH
Q 004414 363 GLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT----FIQ 438 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~----~l~ 438 (755)
..... .+.....+. .++..++... +.. +..-...... +.+.+..+-.... ...
T Consensus 260 ~l~~~----~~~~~~~~~----~~L~~l~~~~----~~~--------~~~~~aV~~e---a~~~i~~l~~~~~l~~~a~~ 316 (618)
T 1w63_A 260 ILGRN----DDDSSEAMN----DILAQVATNT----ETS--------KNVGNAILYE---TVLTIMDIKSESGLRVLAIN 316 (618)
T ss_dssp HHTTT----CHHHHHTTH----HHHHHHHHTS----CCS--------STHHHHHHHH---HHHHHHHSCCCHHHHHHHHH
T ss_pred HhCCC----CHHHHHHHH----HHHHHHHhcc----ccc--------cchHHHHHHH---HHHHHHhcCCCHHHHHHHHH
Confidence 11100 001111222 2332232221 100 0111111222 2222222211111 122
Q ss_pred HHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHH
Q 004414 439 KVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSK 518 (755)
Q Consensus 439 ~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~ 518 (755)
.+.. +.. +.+-.-..++|.+++.++..-+.. . .+....++..+. ++.. .+|..++ ++++.++.
T Consensus 317 ~L~~-~L~----~~d~~vr~~aL~~L~~i~~~~p~~---~-~~~~~~i~~~l~-d~d~------~Ir~~al-elL~~l~~ 379 (618)
T 1w63_A 317 ILGR-FLL----NNDKNIRYVALTSLLKTVQTDHNA---V-QRHRSTIVDCLK-DLDV------SIKRRAM-ELSFALVN 379 (618)
T ss_dssp HHHH-HHT----CSSTTTHHHHHHHHHHHHHHHHHH---H-GGGHHHHHHGGG-SSCH------HHHHHHH-HHHHHHCC
T ss_pred HHHH-HHh----CCCCchHHHHHHHHHHHHhhCHHH---H-HHHHHHHHHHcc-CCCh------hHHHHHH-HHHHHHcc
Confidence 2222 222 122345678888888887542210 0 022233344333 3332 3777774 89888863
Q ss_pred HHHhCccchHHHHHHHHHhcc--cCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHH
Q 004414 519 WISAFQTNARPLLLFLAAGIS--EAVSSNACASALRKICEDASALIDEPSNLEILMWIGE 576 (755)
Q Consensus 519 ~~~~~p~~l~~~l~~l~~~l~--~p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~ 576 (755)
++.+..++.-+...+. +++++..+..++.++|....... .++++.++++..
T Consensus 380 -----~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~--~~~v~~ll~lL~ 432 (618)
T 1w63_A 380 -----GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK--RWHIDTIMRVLT 432 (618)
T ss_dssp -----SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH--HHHHHHHHHHHH
T ss_pred -----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHH
Confidence 4445666666666555 35689999999999998765433 236666666554
No 38
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.89 Score=44.57 Aligned_cols=151 Identities=7% Similarity=0.085 Sum_probs=90.6
Q ss_pred CChhhhHHHHHHHHhhhhhcc-ccCC-ccchHH-HHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCc--cc
Q 004414 452 IPWKEVETKLFALNVVSEVVL-QEGQ-AFDFSV-IMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ--TN 526 (755)
Q Consensus 452 ~~W~~~EA~L~~l~~iae~~~-~~~~-~~~l~~-i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p--~~ 526 (755)
.+-.-+++++.+++.+++++. ..-. .+ ... ++.++..+. +..+ .|+..+ ..++-.+++-....- .+
T Consensus 73 ~n~~v~~~A~~al~~la~~l~~~~f~~~y-~~~llp~ll~~l~-dkk~------~V~~aa-~~al~~i~~~~~~~~~~~~ 143 (249)
T 2qk1_A 73 ANIQAVALAAQSVELICDKLKTPGFSKDY-VSLVFTPLLDRTK-EKKP------SVIEAI-RKALLTICKYYDPLASSGR 143 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTTSCHHH-HHHHHHHHHHGGG-CCCH------HHHHHH-HHHHHHHHHHSCTTCTTCT
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccHHH-HHHHHHHHHHHHc-CCCH------HHHHHH-HHHHHHHHHHccccccCCc
Confidence 446668999999999999886 4433 22 222 333444443 3332 133332 345554544321111 24
Q ss_pred hHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhc---ccCCCchH-HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 004414 527 ARPLLLFLAAGISE--AVSSNACASALRKICEDASA---LIDEPSNL-EILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (755)
Q Consensus 527 l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~---~l~~~~~~-~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (755)
++.+++-++.++.+ |.++..+...+.++++..+. .+. +++ +.+......+. ..-+.+.|...+++++.+..
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~--~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ--RYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH--HHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH--HHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 88999999999987 45889999999999988763 221 133 33333222221 23367789999999999988
Q ss_pred cCCchHHHHHHHHHH
Q 004414 601 SVSNKELKNNLLARL 615 (755)
Q Consensus 601 ~~p~~~~~~~~l~~l 615 (755)
.+..+.. .+++..+
T Consensus 221 ~vG~~~~-~p~l~~L 234 (249)
T 2qk1_A 221 IFGMNTF-VKTLEHL 234 (249)
T ss_dssp HHCSGGG-HHHHHHS
T ss_pred HhCHHHH-HHHHHHH
Confidence 8776542 3444443
No 39
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.70 E-value=0.85 Score=44.37 Aligned_cols=139 Identities=8% Similarity=-0.005 Sum_probs=86.1
Q ss_pred CChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHH
Q 004414 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLL 531 (755)
Q Consensus 452 ~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l 531 (755)
.+-.-+++++.+++.++..+...-... .+.++..+.....++.. .+|..+ +.++.....- . .+..++
T Consensus 69 ~~~~V~~~a~~~l~~la~~l~~~~~~~-~~~ilp~ll~~l~d~~~------~vr~~a-~~aL~~~~~~----~-~~~~ll 135 (242)
T 2qk2_A 69 SNVVLVAMAGKCLALLAKGLAKRFSNY-ASACVPSLLEKFKEKKP------NVVTAL-REAIDAIYAS----T-SLEAQQ 135 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGGCCCH------HHHHHH-HHHHHHHHTT----S-CHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHcCCCH------HHHHHH-HHHHHHHHHc----C-CHHHHH
Confidence 456778999999999998775422211 23333333333345543 366655 4777766542 1 257788
Q ss_pred HHHHHhccc--CchHHHHHHHHHHHHHHhhcc-cCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCch
Q 004414 532 LFLAAGISE--AVSSNACASALRKICEDASAL-IDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNK 605 (755)
Q Consensus 532 ~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~-l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~ 605 (755)
+.++.++.+ |.++..+...+..+...+... .. ..+++.++.....+. ..-..+.|...++++|.+...++.+
T Consensus 136 ~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~-~~~l~~l~p~l~~~l-~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 136 ESIVESLSNKNPSVKSETALFIARALTRTQPTALN-KKLLKLLTTSLVKTL-NEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC-HHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHcCHH
Confidence 888888886 458888888888877665322 22 224444443333222 2235678999999999999887754
No 40
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.09 E-value=13 Score=44.23 Aligned_cols=161 Identities=11% Similarity=0.043 Sum_probs=84.2
Q ss_pred hhhhHHHHHHHHhhhhhccccCCccchHHHHHH-HHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCc---cchHH
Q 004414 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQL-VAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ---TNARP 529 (755)
Q Consensus 454 W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~l-l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p---~~l~~ 529 (755)
-...|.++.+++.+...+.+.-.++ ++.++.. +....+++.+. ++++++.+..-++.++ ..+..
T Consensus 699 ~~v~e~~~~~l~~~~~~~~~~~~~~-l~~~~~~l~~~~~~~~~~~-----------~l~l~~~li~~f~~~~~~~~~~~~ 766 (963)
T 2x19_B 699 AQVVEAVCAIFEKSVKTLLDDFAPM-VPQLCEMLGRMYSTIPQAS-----------ALDLTRQLVHIFAHEPAHFPPIEA 766 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSSSTTGGG-HHHHHHHHHHHHHHSCCHH-----------HHHHHHHHHHHHTTCTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhccccccc-HHHHHHHHHHHHHcCCccH-----------HHHHHHHHHHHhCCCcchHHHHHH
Confidence 3678999999988877665433222 3333332 22223322211 1344444444334333 23333
Q ss_pred HHHHHHH--------hcc-cCchHHHHHHHHHHHHHHhhcccCCCch-HHHHHHH-HHHHHhcCCChhhHHHHHHHHHHH
Q 004414 530 LLLFLAA--------GIS-EAVSSNACASALRKICEDASALIDEPSN-LEILMWI-GEALEKRHLPLEDEEEVVGAISLI 598 (755)
Q Consensus 530 ~l~~l~~--------~l~-~p~v~~~Aa~al~~l~~~c~~~l~~~~~-~~~l~~~-~~~l~~~~l~~~~~~~l~eai~~v 598 (755)
+++.++. .+. +|+++...-..+..++..|...+..++. ++.++.. ...+ + ..+.......+..+..+
T Consensus 767 ~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l-~-~~~~~~~~~~l~~l~~l 844 (963)
T 2x19_B 767 LFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLAL-K-FPEAPTVKASCGFFTEL 844 (963)
T ss_dssp HHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHT-T-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHH
Confidence 3333332 222 4789899999999999999987654444 5554443 3333 1 22444555666677777
Q ss_pred HccCCchHHHHHHHHHHHHHHHHHHHhhhc
Q 004414 599 LGSVSNKELKNNLLARLLSSSYEAIGKLID 628 (755)
Q Consensus 599 i~~~p~~~~~~~~l~~l~~p~~~~l~~~~~ 628 (755)
+...+........+.....+++..+-..+.
T Consensus 845 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 874 (963)
T 2x19_B 845 LPRCGEVESVGKVVQEDGRMLLIAVLEAIG 874 (963)
T ss_dssp GGGTTSSCHHHHHTTTSHHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 765432112233344445555555554444
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=94.02 E-value=5.2 Score=39.49 Aligned_cols=212 Identities=14% Similarity=0.097 Sum_probs=123.7
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHH
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~ 88 (755)
+...+..| .++|+..|..|-..|.++. ++++......+|.+.+ ..+|..|+..|.. +.. +.+....
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d~~------~~vR~~A~~aL~~-l~~-----~~~~~~~ 90 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSDKN------YIRRDIGAFILGQ-IKI-----CKKCEDN 90 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCSS------HHHHHHHHHHHHH-SCC-----CTTTHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcCCC------HHHHHHHHHHHHH-hcc-----ccccchH
Confidence 44455555 4679999999999999887 7889999999997653 5899999999854 221 1122222
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcc-cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhh--------
Q 004414 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVE-HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE-------- 159 (755)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE-------- 159 (755)
+...|.+.+.. .....|+...+.+|+.+....+. .+..++.++..+.+. ++.........|..+..+
T Consensus 91 l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~~~~~~~L~~ 166 (280)
T 1oyz_A 91 VFNILNNMALN--DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK--STNVRRATAFAISVINDKATIPLLIN 166 (280)
T ss_dssp HHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC---CCHHHHHH
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 22222222222 34577899999899887644331 234555555555432 222222233333332211
Q ss_pred -cccccccccCCCHHHHHHHHHHHHh---chhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcc
Q 004414 160 -VIDSQASDCNISSAHRSQYGQELLS---HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (755)
Q Consensus 160 -~~~~~~~~~~~~~~~r~~~~~~l~~---~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~ 235 (755)
+.+ -....|......+.. ..+.++..+...+.+ ++..++..++.++... +
T Consensus 167 ~l~d-------~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d--------~~~~vR~~A~~aL~~~---~-------- 220 (280)
T 1oyz_A 167 LLKD-------PNGDVRNWAAFAININKYDNSDIRDCFVEMLQD--------KNEEVRIEAIIGLSYR---K-------- 220 (280)
T ss_dssp HHTC-------SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC--------SCHHHHHHHHHHHHHT---T--------
T ss_pred HHcC-------CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHh---C--------
Confidence 111 122344444444433 256667777776654 2356787777766532 1
Q ss_pred hhcccchHHHHHhhcCCCCcHHHHHHHHHHHh
Q 004414 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVELV 267 (755)
Q Consensus 236 ~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eii 267 (755)
....++.+...|.+++++..|+.++..+-
T Consensus 221 ---~~~~~~~L~~~l~d~~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 221 ---DKRVLSVLCDELKKNTVYDDIIEAAGELG 249 (280)
T ss_dssp ---CGGGHHHHHHHHTSSSCCHHHHHHHHHHC
T ss_pred ---CHhhHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 23466777788888888888888887663
No 42
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=93.24 E-value=6.1 Score=37.87 Aligned_cols=220 Identities=16% Similarity=0.096 Sum_probs=133.8
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChH----------HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhccc
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDA----------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEG 78 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~----------aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~ 78 (755)
|...+..|. ++++..|.+|-..|..+-.... +......+|.+. +..++..|+..|.+-...
T Consensus 4 i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~------~~~v~~~a~~~L~~l~~~-- 74 (252)
T 4hxt_A 4 VEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST------DSEVQKEAARALANIASG-- 74 (252)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC------CHHHHHHHHHHHHHHHcC--
Confidence 455555554 5678889999999998866543 556667777654 368999999999876542
Q ss_pred CCCChHHHHHH-HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHhhcccCCCchhHHHH
Q 004414 79 YYLQSAAKDAL-LNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVL 150 (755)
Q Consensus 79 ~~l~~~~~~~L-r~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~li~~~~~~~~~~~~~~~lL 150 (755)
+++.+..+ +...+..+...- .+...++...+.+|+.+....+. -...++.++..+.+. ++......+
T Consensus 75 ---~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~ 149 (252)
T 4hxt_A 75 ---PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAA 149 (252)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHH
T ss_pred ---ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHH
Confidence 23333333 333455554432 35577888888888888743221 235677777777652 333445556
Q ss_pred HHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhcccc
Q 004414 151 EMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (755)
Q Consensus 151 ~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~ 230 (755)
..|..+...- +..+..+. . ..++..+.+.+.+ +++.++..++.++.+-....
T Consensus 150 ~~L~~l~~~~-----------~~~~~~~~----~--~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~--- 201 (252)
T 4hxt_A 150 RALANIASGP-----------DEAIKAIV----D--AGGVEVLVKLLTS--------TDSEVQKEAARALANIASGP--- 201 (252)
T ss_dssp HHHHHHTTSC-----------HHHHHHHH----H--TTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSB---
T ss_pred HHHHHHHcCC-----------HHHHHHHH----H--CcCHHHHHHHHCC--------CCHHHHHHHHHHHHHHHcCC---
Confidence 6665554321 11211111 1 3355566666654 23578889998888766421
Q ss_pred ccCcchhcccchHHHHHhhcCCC--CcHHHHHHHHHHHhhcC
Q 004414 231 EISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (755)
Q Consensus 231 ~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~~ 270 (755)
.-....+.....++.+.+.+.++ +++..|+.++..+....
T Consensus 202 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 202 TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 00011244567788888888754 46788888888887654
No 43
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=92.91 E-value=17 Score=42.05 Aligned_cols=303 Identities=12% Similarity=0.025 Sum_probs=145.7
Q ss_pred hHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCC--CcHHHHHHHHH
Q 004414 187 PMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLV 264 (755)
Q Consensus 187 ~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~ 264 (755)
+.++..|.+.+... ++..++..+..++.+-.. .. -....+.....++.+.+.|.++ +++..|+.+|.
T Consensus 191 ~~~i~~Lv~~L~~~-------~d~~vr~~Aa~aL~~Ls~-~~---~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 191 PQMVSAIVRTMQNT-------NDVETARCTSGTLHNLSH-HR---EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLH 259 (780)
T ss_dssp HHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHT-SH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHcCC-------CCHHHHHHHHHHHHHHhC-Cc---hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45566666666543 135688899999887332 10 0112244567889999999865 46888999999
Q ss_pred HHhhcCCChhHHHH-HhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHH---HhhHHHHhcChhHHHHHHHHHhcccCC
Q 004414 265 ELVGRHEGLPQALL-CRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ---AAPSLIVEASPEALALADALLSCVAFP 340 (755)
Q Consensus 265 eii~~~~~~~~~l~-~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e---~~~~~l~~~~~~~~~ll~~ll~~~~~p 340 (755)
.+...+......+. .+.+. .+. ..+.+.+.+.....+..+..++. .....+.+. ..++.++.+....
T Consensus 260 nLa~~~~~~~~~v~~~g~v~---~Lv-~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~-----~~i~~Lv~lL~~~ 330 (780)
T 2z6g_A 260 NLLLHQEGAKMAVRLAGGLQ---KMV-ALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS-----GGPQALVNIMRTY 330 (780)
T ss_dssp HHHHHSTTHHHHHHHTTHHH---HHH-HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTT-----THHHHHHHHHTTC
T ss_pred HHhCCChhhHHHHHHcCCHH---HHH-HHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc-----CCHHHHHHHHhcC
Confidence 99887654333332 12211 111 13334444444433344433331 111122221 1234444444443
Q ss_pred CCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHH
Q 004414 341 SEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNL 420 (755)
Q Consensus 341 ~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~ 420 (755)
. +..+.+.+......+... ... +..... ...++.++..+.- . + .+.|..+
T Consensus 331 ~-~~~~~~~a~~aL~~Ls~~----~~~----~~~i~~------~g~l~~Ll~lL~~--------~--~-----~~~~~~a 380 (780)
T 2z6g_A 331 T-YEKLLWTTSRVLKVLSVC----SSN----KPAIVE------AGGMQALGLHLTD--------P--S-----QRLVQNC 380 (780)
T ss_dssp C-CHHHHHHHHHHHHHHHTS----TTH----HHHHHH------TTHHHHHGGGTTC--------S--C-----HHHHHHH
T ss_pred C-HHHHHHHHHHHHHHhhcC----hHH----HHHHHH------hchHHHHHHHHcC--------C--c-----hHHHHHH
Confidence 1 222222233222222210 100 000000 1233444433320 0 0 1235555
Q ss_pred hHHHHHHHHhc----CcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCC----ccchHHHHHHHHHhcc
Q 004414 421 VELLVDICQLL----RSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQ----AFDFSVIMQLVAVLSA 492 (755)
Q Consensus 421 ~d~l~~~~~~l----~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~----~~~l~~i~~ll~~l~~ 492 (755)
..++..++..- +....+..+...+ .+.+|.-++.++.+|+.++..-..... .-.++.++.++..- +
T Consensus 381 ~~~L~~L~~~~~~~~~~~~~i~~Lv~lL-----~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~ 454 (780)
T 2z6g_A 381 LWTLRNLSDAATKQEGMEGLLGTLVQLL-----GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA-G 454 (780)
T ss_dssp HHHHHHHHTTCTTCSCCHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHH-T
T ss_pred HHHHHHHhccchhhhhhhhHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHcc-C
Confidence 55666665432 1223444444433 246799999999999998764321000 00123333333221 1
Q ss_pred CchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccc--------hHHHHHHHHHhcccC---chHHHHHHHHHHHHH
Q 004414 493 SRSEELKGFMHIVYRSLADVIGSYSKWISAFQTN--------ARPLLLFLAAGISEA---VSSNACASALRKICE 556 (755)
Q Consensus 493 ~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~--------l~~~l~~l~~~l~~p---~v~~~Aa~al~~l~~ 556 (755)
.+. .++..+ +++||..+. .+++. -...++.|++.+.++ .++..|+.++.+++.
T Consensus 455 ~~~-------~v~~~A-l~aL~nL~~---~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 455 DRE-------DITEPA-ICALRHLTS---RHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp TCH-------HHHHHH-HHHHHHTTS---SSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred CHH-------HHHHHH-HHHHHHHHh---cCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 111 256666 488987763 12210 012355666666543 588999999999983
No 44
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.50 E-value=2.5 Score=49.64 Aligned_cols=231 Identities=14% Similarity=0.154 Sum_probs=134.8
Q ss_pred HHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHh
Q 004414 458 ETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAG 537 (755)
Q Consensus 458 EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~ 537 (755)
|+++.++.++++....... . -+.+..+++.+...-.++.. .||..+ -..+..+.. .-+|.-+..+++.++.+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~-~-e~~~~~~~~~~~~~~~dk~~---~v~~aa-~~~~~~~~~--~~~~~a~~~~~~~~~~~ 141 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPS-V-EPYIVQLVPAICTNAGNKDK---EIQSVA-SETLISIVN--AVNPVAIKALLPHLTNA 141 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTT-T-HHHHHTTHHHHHHHTTCSSH---HHHHHH-HHHHHHHHH--HSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCC-c-ccchHHHHHHHHHHhcCCch---HHHHHH-HHHHHHHHH--hCCHHHHHHHHHHHHHH
Confidence 9999999999976543211 1 14444444433211111100 245443 244444443 23787788899999999
Q ss_pred cccCc---hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHH
Q 004414 538 ISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLAR 614 (755)
Q Consensus 538 l~~p~---v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ 614 (755)
+.... .+..|...+.+++++++..+. ..++.+.-+.... ....+.+......+++-.+.+.+.+.+.
T Consensus 142 ~~~~~kw~~k~~~l~~~~~~~~~~~~~~~--~~~~~~~p~~~~~-~~d~k~~v~~~~~~~~~~~~~~~~n~d~------- 211 (986)
T 2iw3_A 142 IVETNKWQEKIAILAAFSAMVDAAKDQVA--LRMPELIPVLSET-MWDTKKEVKAAATAAMTKATETVDNKDI------- 211 (986)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHSHHHHH--HHHHHHHHHHHHH-TTCSSHHHHHHHHHHHHHHGGGCCCTTT-------
T ss_pred hccccchHHHHHHHHHHHHHHHHhHHHHH--HhccchhcchHhh-cccCcHHHHHHHHHHHHHHHhcCCCcch-------
Confidence 96542 677888999999998876653 2444444433321 2445666666666666666666655542
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004414 615 LLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRS 694 (755)
Q Consensus 615 l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~ 694 (755)
.|.+..|-.++..+. . +-.+++.|+.. .+.. .-..|.+ .-+-|+|..-+..
T Consensus 212 --~~~~~~~~~~~~~p~---------~-------~~~~~~~l~~~--tfv~------~v~~~~l---~~~~p~l~r~l~~ 262 (986)
T 2iw3_A 212 --ERFIPSLIQCIADPT---------E-------VPETVHLLGAT--TFVA------EVTPATL---SIMVPLLSRGLNE 262 (986)
T ss_dssp --GGGHHHHHHHHHCTT---------H-------HHHHHHHHTTC--CCCS------CCCHHHH---HHHHHHHHHHHTS
T ss_pred --hhhHHHHHHHhcChh---------h-------hHHHHHHhhcC--eeEe------eecchhH---HHHHHHHHhhhcc
Confidence 234444444555331 1 12245555431 1111 1234455 4445998888853
Q ss_pred hhccchHHHHHHHHHHHHHHHHHh--hhhHhhHHHHHHHHHHHHhh
Q 004414 695 EHMENGNLSTAACRALSLAIQSSG--QHFVTLLPQVLDCLSTNFVS 738 (755)
Q Consensus 695 ~~~~~~~v~e~~~~~~~~~~~~l~--~~~~~~l~~~~~~l~~~f~~ 738 (755)
....+-..++..+..|.+-.. ....||+|.+++.+-..+..
T Consensus 263 ---~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~ 305 (986)
T 2iw3_A 263 ---RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFAT 305 (986)
T ss_dssp ---SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTT
T ss_pred ---CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhc
Confidence 355666778888888777443 36889999999999887655
No 45
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.27 E-value=3.5 Score=39.87 Aligned_cols=230 Identities=14% Similarity=0.050 Sum_probs=130.1
Q ss_pred ChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHH
Q 004414 38 TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFS-SGPPQLLTQICLALS 116 (755)
Q Consensus 38 s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~~la 116 (755)
.+..|.....+|.+.+ .+++.-|+..|++.+..+ ++.....+....+..+...- .++..++...+.+|+
T Consensus 10 ~~~~~~~~~~~L~s~~------~~~~~~a~~~L~~~l~~~----~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 79 (252)
T 4db8_A 10 HGSELPQMTQQLNSDD------MQEQLSATRKFSQILSDG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79 (252)
T ss_dssp TTCSHHHHHHHHHSSC------SSHHHHHHHHHHHHHHHH----HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHcCCC------HHHHHHHHHHHHHHHcCC----CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3445777888887664 489999999998877641 12222333344555554432 345678888888888
Q ss_pred HHHHHhc------ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHH
Q 004414 117 ALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVV 190 (755)
Q Consensus 117 ~l~~~~~------~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~ 190 (755)
.++.... .....++.++..+.+. ++......+..|..+...- ..+...+. ...++
T Consensus 80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-----------~~~~~~~~------~~~~i 140 (252)
T 4db8_A 80 NIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG-----------NEQIQAVI------DAGAL 140 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSC-----------HHHHHHHH------HTTHH
T ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCC-----------chHHHHHH------HCCCH
Confidence 8775322 1234677777777652 3444555566666654331 11111111 12345
Q ss_pred HHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCC--CcHHHHHHHHHHHhh
Q 004414 191 EFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVG 268 (755)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~ 268 (755)
..+.+.+.+. +..++..++.++.+-..... -....+.....++.+.+.|.++ +++..|+.++..+..
T Consensus 141 ~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 141 PALVQLLSSP--------NEQILQEALWALSNIASGGN---EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHHGGGCS--------CHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCC--------CHHHHHHHHHHHHHHHcCCh---HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 5666666542 35688888888887654210 0011234567888999998865 468889999999886
Q ss_pred cCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHH
Q 004414 269 RHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSE 310 (755)
Q Consensus 269 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~ 310 (755)
...+..+.+... +..+.+. ..+.+++.+..+..+..+..
T Consensus 210 ~~~~~~~~~~~~--g~i~~L~-~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 210 GGNEQKQAVKEA--GALEKLE-QLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp SCHHHHHHHHHT--THHHHHH-TTTTCSSSHHHHTHHHHHHT
T ss_pred CCHHHHHHHHHC--CcHHHHH-HHhCCCCHHHHHHHHHHHHH
Confidence 544333333321 1112222 23445566665555555443
No 46
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=91.83 E-value=19 Score=40.25 Aligned_cols=128 Identities=8% Similarity=0.015 Sum_probs=69.0
Q ss_pred cCCChHHHHHHHHHHHHHhcC-hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 004414 18 HDTESCNRVAANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVA 96 (755)
Q Consensus 18 ~~~d~~~~~qA~~~L~~fq~s-~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~ 96 (755)
+++|...|+-+--++..+-+. ++--.++..-+..+-. +.++.+|-.|..+|-+- . .++-.+.+-..+.+.
T Consensus 84 ~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~--~~n~~ir~lALr~L~~i-~------~~e~~~~l~~~v~~~ 154 (621)
T 2vgl_A 84 SSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLA--SRNPTFMGLALHCIANV-G------SREMAEAFAGEIPKI 154 (621)
T ss_dssp GCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH--SCCHHHHHHHHHHHHHH-C------CHHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcC--CCCHHHHHHHHHHhhcc-C------CHHHHHHHHHHHHHH
Confidence 345666666666666666554 4433333333322211 13456677777777543 2 234444444444444
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHhc-ccC--chHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 004414 97 AKRFSSGPPQLLTQICLALSALILRAV-EHG--KPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (755)
Q Consensus 97 l~~~~~~~~~v~~kL~~~la~l~~~~~-~W~--~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (755)
+.+ ...++.||++-+.++..++...+ .=+ ++++.+...+... ++......+.++..+.
T Consensus 155 l~~-~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 155 LVA-GDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQ--HLGVVTAATSLITTLA 215 (621)
T ss_dssp HHC-SSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCS--CHHHHHHHHHHHHHHH
T ss_pred HhC-CCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCC--CccHHHHHHHHHHHHH
Confidence 421 23568899999999999887655 223 6677777777532 3333334444444443
No 47
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=91.51 E-value=6.6 Score=39.50 Aligned_cols=168 Identities=13% Similarity=0.190 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHhccccccCcchhcc----cchHHHHH-hhcCC-CCcHH-HHHHHHHHHhhcCCChh----HHHHHh
Q 004414 212 RNRKILRCLLSWVRAGCFTEISQGSLAA----HPLLNFVF-NSLQV-QSSFD-VAIEVLVELVGRHEGLP----QALLCR 280 (755)
Q Consensus 212 l~~~~l~c~~sWi~~~~~~~~~~~~~~~----~~ll~~~~-~~L~~-~~~~~-~a~~~l~eii~~~~~~~----~~l~~~ 280 (755)
++...|+-+..|++-.+ +.+ .+. +|+++.++ ..-++ |+.|+ ...+++..++.+..+.+ ..++..
T Consensus 45 vKkeiLkLiet~i~~~~----d~~-~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~ 119 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSN----DPQ-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA 119 (321)
T ss_dssp HHHHHHHHHHHHHTTCS----CHH-HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----CHH-HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 67778888888887431 111 122 33443222 33323 55555 35677777777654332 223332
Q ss_pred hhh-hHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcC-hhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHH
Q 004414 281 VPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS-PEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358 (755)
Q Consensus 281 ~~~-l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~-~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~ 358 (755)
+.. ..+.+. ..-++-+|-..++.+++-++...+...+.+-| +++..+++.++....|+ +++|++..+.-...+.
T Consensus 120 VFe~TL~MI~--~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~--~r~V~e~gL~il~~ll 195 (321)
T 1w9c_A 120 VFECTLNMIN--KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT--MRNVADTGLQILFTLL 195 (321)
T ss_dssp HHHHHHHHHS--STTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHH
Confidence 221 111111 11245578889999999999998877777655 46688999999999998 7899999998887777
Q ss_pred HHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhc
Q 004414 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQ 395 (755)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~ 395 (755)
+.+.. .+ +.....|+.+|..++.-++.-++
T Consensus 196 ~n~~~-~~------~~~~~Fy~~fy~~il~~if~VlT 225 (321)
T 1w9c_A 196 QNVAQ-EE------AAAQSFYQTYFCDILQHIFSVVT 225 (321)
T ss_dssp HHHHH-CH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-Ch------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 76532 11 13445677777777776665443
No 48
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.33 E-value=2.5 Score=50.50 Aligned_cols=208 Identities=10% Similarity=-0.005 Sum_probs=113.5
Q ss_pred HHHhHHHHHHHhhHHHHHh--CccchHHHHHHHHHhccc-----Cc--hHHHHHHHHHHHHHHhhcccCCCchHHHHH-H
Q 004414 504 IVYRSLADVIGSYSKWISA--FQTNARPLLLFLAAGISE-----AV--SSNACASALRKICEDASALIDEPSNLEILM-W 573 (755)
Q Consensus 504 v~~~t~~~~ig~y~~~~~~--~p~~l~~~l~~l~~~l~~-----p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~-~ 573 (755)
.+.++ ++++|+.++=... ...+++.++++++.-..+ +. ++..+++.+-++|+=...+ |.+++.++ .
T Consensus 469 ~~EA~-~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~---~~~L~~vl~~ 544 (1023)
T 4hat_C 469 NINTL-SWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH---WNFLRTVILK 544 (1023)
T ss_dssp HHHHH-HHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC---HHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHH
Confidence 45665 6999998763221 234788899988875542 33 5567778888888766543 33554433 3
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHH--HHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHH
Q 004414 574 IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELK--NNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATR 651 (755)
Q Consensus 574 ~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~--~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 651 (755)
+.+.+. .-.+..+.....++..+.......-.. ......++.+++..+.++...- ++ +....
T Consensus 545 L~~~l~--~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l-------~~-------~~~~~ 608 (1023)
T 4hat_C 545 LFEFMH--ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL-------QP-------QQVHT 608 (1023)
T ss_dssp HHHHTT--CSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-------CH-------HHHHH
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhC-------CH-------HHHHH
Confidence 333331 112345666677777776542111000 0000124555666666665521 11 11233
Q ss_pred HHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh---hhc------cchH---HHHHHHHHHHHHHHHHhh
Q 004414 652 GLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRS---EHM------ENGN---LSTAACRALSLAIQSSGQ 719 (755)
Q Consensus 652 ~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~---~~~------~~~~---v~e~~~~~~~~~~~~l~~ 719 (755)
..+.++.+.+..... ......++++++.+...... .+. .+++ .+=.++++..++..++|.
T Consensus 609 lyeai~~vi~~~~~~--------~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~ 680 (1023)
T 4hat_C 609 FYKACGIIISEERSV--------AERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA 680 (1023)
T ss_dssp HHHHHHHHHTTCCSH--------HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCH--------hhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcH
Confidence 455666766654421 11223444444433333221 011 1222 233566677788899999
Q ss_pred hhHhhHHHHHHHHHHHHhhc
Q 004414 720 HFVTLLPQVLDCLSTNFVSF 739 (755)
Q Consensus 720 ~~~~~l~~~~~~l~~~f~~~ 739 (755)
.|.|++.++.+.+++.|+.+
T Consensus 681 ~f~~~~~~i~~~~l~~y~~~ 700 (1023)
T 4hat_C 681 DFYPQLGHIYYNMLQLYRAV 700 (1023)
T ss_dssp GGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888764
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=91.27 E-value=19 Score=39.11 Aligned_cols=293 Identities=12% Similarity=0.049 Sum_probs=158.5
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhc---Ch--------HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcc
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQ---TD--------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~---s~--------~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~ 77 (755)
+.+.|+.++ +.|++.+.+|-+.++++-. .| .+-....++|...+ +..+|+-||-.|.+-..
T Consensus 59 i~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~-----~~~lq~~Aa~aL~nias-- 130 (510)
T 3ul1_B 59 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-----CSPIQFESAWALTNIAS-- 130 (510)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT-----CHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC-----CHHHHHHHHHHHHHHhc--
Confidence 677888886 5689999999988887632 22 13455677786554 35899999999987543
Q ss_pred cCCCChHHHHHHHH-HHHHHHHHh-cCCChHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHhhcccCCCc---hh
Q 004414 78 GYYLQSAAKDALLN-ALLVAAKRF-SSGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDN---GN 146 (755)
Q Consensus 78 ~~~l~~~~~~~Lr~-~Ll~~l~~~-~~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~li~~~~~~~~~~~---~~ 146 (755)
-+.+....+.+ ..+..|... ..++..++.+-+.+|..++...+. -...++-++..+.....+.. ..
T Consensus 131 ---~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~ 207 (510)
T 3ul1_B 131 ---GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207 (510)
T ss_dssp ---SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHH
T ss_pred ---CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHH
Confidence 24444444433 344444433 245677999999999988864321 22345556666543211110 11
Q ss_pred HHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHh
Q 004414 147 MAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRA 226 (755)
Q Consensus 147 ~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~ 226 (755)
......+..+...-.. .... .....++..|.+.+.+. +.+++..+..|+..-...
T Consensus 208 ~~a~~~L~nl~~~~~~-------~~~~----------~~~~~~lp~L~~LL~~~--------~~~v~~~A~~aL~~L~~~ 262 (510)
T 3ul1_B 208 RNLTWTLSNLCRNKNP-------APPL----------DAVEQILPTLVRLLHHN--------DPEVLADSCWAISYLTDG 262 (510)
T ss_dssp HHHHHHHHHHHCCCSS-------CCCH----------HHHHHHHHHHHHHTTCS--------CHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhhcccc-------hhHH----------HHHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhhc
Confidence 2223333333322110 0000 01234555666666542 346777777776544321
Q ss_pred ccccccCcchhcccchHHHHHhhcCCC--CcHHHHHHHHHHHhhcCCChhHHHHH-hhhhhHHHhhhhhhcCCCHHHHhH
Q 004414 227 GCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGG 303 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~e~~~~ 303 (755)
. .-....+....+++.+...|.++ .+...|+.++..+..........++. +.+. .+. ..+.+.+.+..+.
T Consensus 263 ~---~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~---~L~-~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 263 P---NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA---VFP-SLLTNPKTNIQKE 335 (510)
T ss_dssp C---HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG---GCC--CTTCSSHHHHHH
T ss_pred h---hhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH---HHH-HHhcCCCHHHHHH
Confidence 1 00011234567788888888765 45778888888887665433333332 2221 121 2344566666677
Q ss_pred HHHHHHHHHHHh---hHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcH
Q 004414 304 LACLMSEIGQAA---PSLIVEASPEALALADALLSCVAFPSEDWEIADSTL 351 (755)
Q Consensus 304 l~~l~~~l~e~~---~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~ 351 (755)
.|..+..++... ...+.+ ..+++.++.+...+ +.++...+.
T Consensus 336 A~~aL~nl~a~~~~~~~~v~~-----~g~i~~Lv~lL~~~--~~~v~~~Aa 379 (510)
T 3ul1_B 336 ATWTMSNITAGRQDQIQQVVN-----HGLVPFLVGVLSKA--DFKTQKEAA 379 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH-----TTHHHHHHHHHHSS--CHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHh-----cCCHHHHHHHHcCC--CHHHHHHHH
Confidence 777777665322 112221 13555666666654 455554444
No 50
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=90.57 E-value=12 Score=35.65 Aligned_cols=226 Identities=15% Similarity=0.077 Sum_probs=127.8
Q ss_pred HHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHh
Q 004414 44 IATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRA 122 (755)
Q Consensus 44 ~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~ 122 (755)
....+|.+. +.++|.-|+..|.+-...+ ++.....++...+..+...- .+...++...+.+|+.+....
T Consensus 6 ~L~~~L~~~------~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 6 KLVKLLTST------DSETQKEAARDLAEIASGP----ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp HHHHHTTCS------CHHHHHHHHHHHHHHHTSC----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHcCC------CHHHHHHHHHHHHHHhcCC----cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 345566544 3589999999998876642 12222333334555555433 345778899998888887542
Q ss_pred cc------cCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHh
Q 004414 123 VE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQ 196 (755)
Q Consensus 123 ~~------W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~ 196 (755)
.. -...++.++..+.+. ++......+..|..+...- +..+..+.+ ..++..+.+.
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~-----------~~~~~~~~~------~~~i~~L~~~ 136 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGP-----------DEAIKAIVD------AGGVEVLVKL 136 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSC-----------HHHHHHHHH------TTHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCC-----------HHHHHHHHH------CCCHHHHHHH
Confidence 21 224677777777642 3444555666666655421 111211111 2345555555
Q ss_pred hhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCC--CcHHHHHHHHHHHhhcCCChh
Q 004414 197 SDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLP 274 (755)
Q Consensus 197 l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~~~~~~ 274 (755)
+.+ +++.++..++.++.+-.... .-....+.....++.+.+.|.++ +++..|+.++..+........
T Consensus 137 l~~--------~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 205 (252)
T 4hxt_A 137 LTS--------TDSEVQKEAARALANIASGP---DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI 205 (252)
T ss_dssp TTC--------SCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHH
T ss_pred HcC--------CCHHHHHHHHHHHHHHHcCC---HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 554 23568889999888765521 00011244567888899988864 568889999988886443333
Q ss_pred HHHHH-hhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHH
Q 004414 275 QALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (755)
Q Consensus 275 ~~l~~-~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e 313 (755)
+.+.. +++ +.+. ..+.++|.+..+..+..+..++.
T Consensus 206 ~~l~~~~~i---~~L~-~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 206 KAIVDAGGV---EVLQ-KLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHTTHH---HHHH-HGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCH---HHHH-HHHCCCcHHHHHHHHHHHHHHHc
Confidence 33332 111 1221 23445566666666665555543
No 51
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=88.91 E-value=11 Score=36.87 Aligned_cols=145 Identities=9% Similarity=-0.010 Sum_probs=89.0
Q ss_pred HHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHH-HhccCc
Q 004414 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA-VLSASR 494 (755)
Q Consensus 416 ~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~-~l~~~~ 494 (755)
.|......+... |.+..+..+...+. +.++..+.+++++|+.++..- .. ++.++.++. .+.+++
T Consensus 39 vr~~A~~~L~~~----~~~~~~~~L~~~l~-----d~~~~vR~~A~~aL~~l~~~~---~~---~~~l~~~L~~~~~~d~ 103 (280)
T 1oyz_A 39 KRISSARVLQLR----GGQDAVRLAIEFCS-----DKNYIRRDIGAFILGQIKICK---KC---EDNVFNILNNMALNDK 103 (280)
T ss_dssp HHHHHHHHHHHH----CCHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHSCCCT---TT---HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcc----CCchHHHHHHHHHc-----CCCHHHHHHHHHHHHHhcccc---cc---chHHHHHHHHHHhcCC
Confidence 355555455433 44445555555432 356778888999998876321 11 355555554 334555
Q ss_pred hhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHH
Q 004414 495 SEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILM 572 (755)
Q Consensus 495 ~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~ 572 (755)
.+ .+|..+ ++.+|.++. .+|.+-+.+++.+...+.+++ ++..|+.++.++.. +...+.|.
T Consensus 104 ~~------~vr~~a-~~aL~~l~~---~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L~ 165 (280)
T 1oyz_A 104 SA------CVRATA-IESTAQRCK---KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLLI 165 (280)
T ss_dssp CH------HHHHHH-HHHHHHHHH---HCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHH
T ss_pred CH------HHHHHH-HHHHHHHhc---cCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHHH
Confidence 43 367766 499998763 345566778888888888755 88899999887643 22445554
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHH
Q 004414 573 WIGEALEKRHLPLEDEEEVVGAISLI 598 (755)
Q Consensus 573 ~~~~~l~~~~l~~~~~~~l~eai~~v 598 (755)
.... .-+...|.....++|.+
T Consensus 166 ~~l~-----d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 166 NLLK-----DPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHT-----CSSHHHHHHHHHHHHHH
T ss_pred HHHc-----CCCHHHHHHHHHHHHhh
Confidence 4331 22456788888888886
No 52
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=88.79 E-value=0.37 Score=45.60 Aligned_cols=137 Identities=15% Similarity=0.041 Sum_probs=77.3
Q ss_pred CCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccch---
Q 004414 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA--- 527 (755)
Q Consensus 451 ~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l--- 527 (755)
+.++...+.++.+|+.++..-........-...+..+..+..++.+ .++..+ +++++..+. .+++..
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~------~v~~~a-~~~L~~l~~---~~~~~~~~i 92 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE------QILQEA-LWALSNIAS---GGNEQIQAV 92 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------HHHHHH-HHHHHHHTT---SCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH------HHHHHH-HHHHHHHhc---CCcHHHHHH
Confidence 4568888999999999985432110000000122333333344433 256665 589998763 122211
Q ss_pred --HHHHHHHHHhcccC--chHHHHHHHHHHHHHHhhcc---cCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 004414 528 --RPLLLFLAAGISEA--VSSNACASALRKICEDASAL---IDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (755)
Q Consensus 528 --~~~l~~l~~~l~~p--~v~~~Aa~al~~l~~~c~~~---l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (755)
...++.++..+.++ .++..|+.++.++|...... +.....++.|..+. ... +.+.+...+.+++.+..
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~--~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSP--NEQILQEALWALSNIAS 167 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT---TCS--CHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH---cCC--CHHHHHHHHHHHHHHHc
Confidence 13456666667654 58999999999999543221 11112334444332 222 56778889999999887
Q ss_pred cC
Q 004414 601 SV 602 (755)
Q Consensus 601 ~~ 602 (755)
.-
T Consensus 168 ~~ 169 (210)
T 4db6_A 168 GG 169 (210)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.79 E-value=7.2 Score=45.83 Aligned_cols=213 Identities=11% Similarity=0.047 Sum_probs=123.0
Q ss_pred hhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCcc----chHHH
Q 004414 455 KEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT----NARPL 530 (755)
Q Consensus 455 ~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~----~l~~~ 530 (755)
.-++|+-.+..++...++.+.- -..++.++..+..... |. .+..+ +.+++++.+ ..|+ .++.+
T Consensus 110 ~v~~aa~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~k--w~----~k~~~-l~~~~~~~~---~~~~~~~~~~~~~ 176 (986)
T 2iw3_A 110 EIQSVASETLISIVNAVNPVAI---KALLPHLTNAIVETNK--WQ----EKIAI-LAAFSAMVD---AAKDQVALRMPEL 176 (986)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGH---HHHHHHHHHHHHHCCC--HH----HHHHH-HHHHHHHHH---HSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHhccccc--hH----HHHHH-HHHHHHHHH---HhHHHHHHhccch
Confidence 4678999999999888875331 1223334444432222 21 33344 588888775 3355 56788
Q ss_pred HHHHHHhccc--CchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHH
Q 004414 531 LLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELK 608 (755)
Q Consensus 531 l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~ 608 (755)
++.+..++.| |+|+.+|-.++.++|.-....=.. ++++.|..... ++++ +-|+|-.+.+. ..=..+
T Consensus 177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-~~~~~~~~~~~-------~p~~---~~~~~~~l~~~-tfv~~v 244 (986)
T 2iw3_A 177 IPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-RFIPSLIQCIA-------DPTE---VPETVHLLGAT-TFVAEV 244 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-GGHHHHHHHHH-------CTTH---HHHHHHHHTTC-CCCSCC
T ss_pred hcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-hhHHHHHHHhc-------Chhh---hHHHHHHhhcC-eeEeee
Confidence 8888899987 679999999999999665543222 36666666543 2222 34444333322 110000
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHH
Q 004414 609 NNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPML 688 (755)
Q Consensus 609 ~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l 688 (755)
....-.++-|++.+ -++... . ... ....-.++.++++.. .+.-+.+++-+++|-+
T Consensus 245 ~~~~l~~~~p~l~r---~l~~~~------~--~~~---r~~~~~~~n~~~lv~-----------~~~~~~~f~~~l~p~~ 299 (986)
T 2iw3_A 245 TPATLSIMVPLLSR---GLNERE------T--GIK---RKSAVIIDNMCKLVE-----------DPQVIAPFLGKLLPGL 299 (986)
T ss_dssp CHHHHHHHHHHHHH---HHTSSS------H--HHH---HHHHHHHHHHHTTCC-----------CHHHHHHHHTTTHHHH
T ss_pred cchhHHHHHHHHHh---hhccCc------c--hhh---eeeEEEEcchhhhcC-----------CHHHHhhhhhhhhhHH
Confidence 11123456676665 222110 0 000 222334555655422 1233567778888988
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHHhh
Q 004414 689 EKLFRSEHMENGNLSTAACRALSLAIQSSGQ 719 (755)
Q Consensus 689 ~~i~~~~~~~~~~v~e~~~~~~~~~~~~l~~ 719 (755)
+.+.. -..++|+.|.+-+++..+.+.-+.
T Consensus 300 ~~~~~--~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 300 KSNFA--TIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHTT--TCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhh--ccCCHHHHHHHHHHHHHHHHhhcc
Confidence 88886 457899999888888887776554
No 54
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=88.63 E-value=9.4 Score=37.41 Aligned_cols=135 Identities=10% Similarity=0.079 Sum_probs=84.3
Q ss_pred CcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHH-HHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHh
Q 004414 343 DWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSV-FSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLV 421 (755)
Q Consensus 343 d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~ 421 (755)
+..|...++++...+.+.+...+ ..+.+. ...+++.++.|+- |.. ..+|..+.
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~-----------y~~~~~ea~~~lP~LveKlG------------d~k---~~vR~~~r 153 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTE-----------TPMSQEEVSAFVPYLLLKTG------------EAK---DNMRTSVR 153 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-----------CCCCHHHHHHHHHHHHHGGG------------CSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc-----------ccchHHHHHHHHHHHHHHhC------------CCh---HHHHHHHH
Confidence 45788888888887776542110 112222 3567888888872 112 34588888
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHH---HHHHHhccCchhhh
Q 004414 422 ELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIM---QLVAVLSASRSEEL 498 (755)
Q Consensus 422 d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~---~ll~~l~~~~~~~~ 498 (755)
++++.++.+.++..++..+.+.+. +.+|+.+|.|+..+.++-+...... ...+ ..+..+.+++..
T Consensus 154 ~il~~l~~v~~~~~v~~~l~~g~k-----sKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~ll~D~d~-- 221 (266)
T 2of3_A 154 DIVNVLSDVVGPLKMTPMLLDALK-----SKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPFVGDKDV-- 221 (266)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHGGG-----CSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGGGGCSSH--
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHHHHcCCCH--
Confidence 888888888777667777766543 4569999999999998765432111 1222 444444555543
Q ss_pred hhHHHHHHhHHHHHHHhhHHHH
Q 004414 499 KGFMHIVYRSLADVIGSYSKWI 520 (755)
Q Consensus 499 ~~~~~v~~~t~~~~ig~y~~~~ 520 (755)
.||.+++ .++.....+.
T Consensus 222 ----~VR~aAl-~~lve~y~~~ 238 (266)
T 2of3_A 222 ----NVRNAAI-NVLVACFKFE 238 (266)
T ss_dssp ----HHHHHHH-HHHHHHHHHH
T ss_pred ----HHHHHHH-HHHHHHHHHh
Confidence 3787774 7777555443
No 55
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=87.42 E-value=10 Score=35.18 Aligned_cols=189 Identities=14% Similarity=0.008 Sum_probs=109.9
Q ss_pred ChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHH-HHHHHHHHHHhc-CCChHHHHHHHHHH
Q 004414 38 TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDAL-LNALLVAAKRFS-SGPPQLLTQICLAL 115 (755)
Q Consensus 38 s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~L-r~~Ll~~l~~~~-~~~~~v~~kL~~~l 115 (755)
.+..+.....||.+.+ .++|.-|+..|.+-... +++.+..+ ....+..+...- .++..++...+.+|
T Consensus 10 ~~~~~~~l~~LL~s~~------~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L 78 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD------QQELQSALRKLSQIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 78 (210)
T ss_dssp ---CHHHHHHHTTCSC------HHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCC------HHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4556778888887653 58999999999886543 33333333 334444444432 34567888888888
Q ss_pred HHHHHHhc------ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHH
Q 004414 116 SALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMV 189 (755)
Q Consensus 116 a~l~~~~~------~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v 189 (755)
+.++.... .....++.++..+.+. ++......+..|..+...- +..+..+. ...+
T Consensus 79 ~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-----------~~~~~~~~------~~~~ 139 (210)
T 4db6_A 79 SNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG-----------NEQIQAVI------DAGA 139 (210)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSC-----------HHHHHHHH------HTTH
T ss_pred HHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCC-----------HHHHHHHH------HcCc
Confidence 88764322 1356778888888653 3334444555555554321 11111111 1234
Q ss_pred HHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCC--CcHHHHHHHHHHHh
Q 004414 190 VEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELV 267 (755)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii 267 (755)
+..|.+.+.+. +..++..++.++.+-..... -....+.....++.+.+.+.++ ++++.|+.++..+.
T Consensus 140 i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 140 LPALVQLLSSP--------NEQILQEALWALSNIASGGN---EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHTTCS--------CHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCC--------CHHHHHHHHHHHHHHHcCCc---HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 55555556542 35688999998888765311 0111234566788888888754 56777887776553
No 56
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.42 E-value=40 Score=40.37 Aligned_cols=158 Identities=11% Similarity=0.132 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHH
Q 004414 546 ACASALRKICEDASALIDEPSNLEILMWIGEALEK-RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIG 624 (755)
Q Consensus 546 ~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~-~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~ 624 (755)
.++..+..+|...+.. .++.+......... ...+-..++..+-++|++...+..+.. ..++..++ ..+.
T Consensus 432 ~~~~~L~~l~~~~~~~-----~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e-~~~l~~v~----~~l~ 501 (1049)
T 3m1i_C 432 SEREVLVYLTHLNVID-----TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTE-KRFVVTVI----KDLL 501 (1049)
T ss_dssp HHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHH----HHHH
T ss_pred HHHHHHHHHHccCHHH-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhh-HHHHHHHH----HHHH
Confidence 5666777777443322 23333333332222 223445688888899988877655421 22233333 3333
Q ss_pred hhhccCCCCCCCCCChhHHHHHH-HHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhc-cchHH
Q 004414 625 KLIDGDNNHSLIHNPATYTQILS-SATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHM-ENGNL 702 (755)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~~L~~~f~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~i~~~~~~-~~~~v 702 (755)
++...... .++.. .+. .++..+.+.+..++. || .. +-+++..++.. .. .+..|
T Consensus 502 ~l~~~~~~----~~~~~---~v~~~~~~~lgry~~~~~~------------~~--~~---l~~vl~~ll~~-l~~~~~~V 556 (1049)
T 3m1i_C 502 DLTVKKRG----KDNKA---VVASDIMYVVGQYPRFLKA------------HW--NF---LRTVILKLFEF-MHETHEGV 556 (1049)
T ss_dssp HHTTSSCS----HHHHH---HHHHHHHHHHHHCHHHHHH------------CH--HH---HHHHHHHHHHH-TTSSCHHH
T ss_pred HHHhhhcc----ccchH---HHHHHHHHHHHHHHHHHHh------------HH--HH---HHHHHHHHHHH-hcCCCHHH
Confidence 32211100 01111 111 234444444444332 22 22 23444555542 22 25899
Q ss_pred HHHHHHHHHHHHHHHhhhhH--------hhHHHHHHHHHHHHhh
Q 004414 703 STAACRALSLAIQSSGQHFV--------TLLPQVLDCLSTNFVS 738 (755)
Q Consensus 703 ~e~~~~~~~~~~~~l~~~~~--------~~l~~~~~~l~~~f~~ 738 (755)
..++|.++.++...++..+. ||++++++.+...+..
T Consensus 557 ~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~ 600 (1049)
T 3m1i_C 557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD 600 (1049)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh
Confidence 99999999999999999886 9999999988877665
No 57
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=86.88 E-value=1.9 Score=43.47 Aligned_cols=137 Identities=9% Similarity=0.042 Sum_probs=77.3
Q ss_pred CCChhhhHHHHHHHHhhhhhccccCCcc-chHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCcc----
Q 004414 451 PIPWKEVETKLFALNVVSEVVLQEGQAF-DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT---- 525 (755)
Q Consensus 451 ~~~W~~~EA~L~~l~~iae~~~~~~~~~-~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~---- 525 (755)
+.+-.-++.++++++.++..-+...+.. ...-+..++..+.+.+.. .++..+ +|+|+..+. .++.
T Consensus 93 s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~------~v~~~A-~~ALsnl~~---~~~~~~~~ 162 (296)
T 1xqr_A 93 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACD------TVRVKA-LFAISCLVR---EQEAGLLQ 162 (296)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCH------HHHHHH-HHHHHHHHT---TCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCH------HHHHHH-HHHHHHHHc---CCcHHHHH
Confidence 3456778999999999875432110000 001223333333333332 256665 589887763 2222
Q ss_pred ch-HHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhc---ccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 004414 526 NA-RPLLLFLAAGISE--AVSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLIL 599 (755)
Q Consensus 526 ~l-~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~---~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (755)
+. ...++.|+..+.+ +.++..|+.++.++|..... .+.....++.|..+ +... +.+.+.....+++.++
T Consensus 163 ~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L---L~~~--d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL---VRTE--HSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH---HTSC--CSTHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH---HcCC--ChhHHHHHHHHHHHHH
Confidence 22 1355566665554 55899999999999976322 12111233334433 2222 5677999999999999
Q ss_pred ccC
Q 004414 600 GSV 602 (755)
Q Consensus 600 ~~~ 602 (755)
...
T Consensus 238 ~~~ 240 (296)
T 1xqr_A 238 TDF 240 (296)
T ss_dssp TTC
T ss_pred hCC
Confidence 873
No 58
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=85.66 E-value=44 Score=36.29 Aligned_cols=295 Identities=12% Similarity=0.042 Sum_probs=156.7
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhc---Ch--------HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcc
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQ---TD--------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~---s~--------~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~ 77 (755)
+.+.++.++ ++|++.+.+|-..++++-. .| .+-.....+|...+ +..+++-||..|.+-...
T Consensus 78 l~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~-----~~~~q~~Aa~aL~nia~~- 150 (529)
T 3tpo_A 78 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-----CSPIQFESAWALTNIASG- 150 (529)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT-----CHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHcC-
Confidence 667777776 5688888888888887632 22 12234566775543 368999999999875542
Q ss_pred cCCCChHHH-HHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHhhcccCCCc---hh
Q 004414 78 GYYLQSAAK-DALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDN---GN 146 (755)
Q Consensus 78 ~~~l~~~~~-~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~li~~~~~~~~~~~---~~ 146 (755)
+.+.. .-+....+..|.... .++..++.+.+.+|+.++...+. =...++-++..+.....+.. ..
T Consensus 151 ----~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~ 226 (529)
T 3tpo_A 151 ----TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 226 (529)
T ss_dssp ----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHH
T ss_pred ----CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHH
Confidence 33333 333334455444432 35577889989899988764321 12345555555543211110 11
Q ss_pred HHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHh
Q 004414 147 MAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRA 226 (755)
Q Consensus 147 ~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~ 226 (755)
......+..+...-.. ... ......++..|.+.+.+. ++.++..+..|+..-...
T Consensus 227 ~~a~~~L~nl~~~~~~-------~~~----------~~~~~~~lp~L~~LL~~~--------~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 227 RNLTWTLSNLCRNKNP-------APP----------LDAVEQILPTLVRLLHHN--------DPEVLADSCWAISYLTDG 281 (529)
T ss_dssp HHHHHHHHHHHCCCTT-------CCC----------HHHHHHHHHHHHHHTTSS--------CHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcccc-------hhh----------HHHHhhHHHHHHHHhcCC--------cHHHHHHHHHHHHHhhhh
Confidence 2223333333322110 000 001234555666666542 356777777777654431
Q ss_pred ccccccCcchhcccchHHHHHhhcCCCC--cHHHHHHHHHHHhhcCCChhHHHHH-hhhhhHHHhhhhhhcCCCHHHHhH
Q 004414 227 GCFTEISQGSLAAHPLLNFVFNSLQVQS--SFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGG 303 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~ll~~~~~~L~~~~--~~~~a~~~l~eii~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~e~~~~ 303 (755)
. .--...+.....++.+...|.+++ +...|+.++..+..........++. +.+.. +. ..+.+.+.+..+.
T Consensus 282 ~---~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~---L~-~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 282 P---NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV---FP-SLLTNPKTNIQKE 354 (529)
T ss_dssp C---HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGG---HH-HHTTCSSHHHHHH
T ss_pred h---hhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHH---HH-HHHcCCCHHHHHH
Confidence 1 000112345677888888887654 5778888888887655433333332 22221 11 1334556666667
Q ss_pred HHHHHHHHHHHhh---HHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHH
Q 004414 304 LACLMSEIGQAAP---SLIVEASPEALALADALLSCVAFPSEDWEIADSTLQF 353 (755)
Q Consensus 304 l~~l~~~l~e~~~---~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~F 353 (755)
.|..+..++.... ..+.+ ..+++.++.+...+ +.++...+.-.
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~-----~g~i~~Lv~lL~~~--~~~v~~~A~~a 400 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVN-----HGLVPFLVGVLSKA--DFKTQKAAAWA 400 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHH-----TTHHHHHHHHHHSS--CHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHh-----cCcHHHHHHHhcCC--CHHHHHHHHHH
Confidence 7777766654221 22221 13555666666554 45555544433
No 59
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=83.52 E-value=52 Score=35.35 Aligned_cols=263 Identities=15% Similarity=0.052 Sum_probs=130.9
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHH------HHHHHHHHHHHHhcCCChHHHHHHHH
Q 004414 40 AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD------ALLNALLVAAKRFSSGPPQLLTQICL 113 (755)
Q Consensus 40 ~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~------~Lr~~Ll~~l~~~~~~~~~v~~kL~~ 113 (755)
.+......+|.+. +..+|..|+.+|.+-...+ +.+. ..-..|++.+.. .....++..-+.
T Consensus 17 ~~i~~Lv~lL~~~------~~~v~~~A~~~L~~l~~~~------~~~~~~~~~~~~i~~Lv~~L~~--~~~~~~~~~a~~ 82 (529)
T 1jdh_A 17 RAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKE------ASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTAG 82 (529)
T ss_dssp CHHHHHHHHHTCS------CHHHHHHHHHHHHHHHTSH------HHHHHHHTCHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred hhHHHHHHHhCCC------CHHHHHHHHHHHHHHHcCC------ccHHHHHhCcchHHHHHHHHhc--CCCHHHHHHHHH
Confidence 3445566677643 3578888888887654321 1221 122233333332 224567777777
Q ss_pred HHHHHHHHhc-----ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhH
Q 004414 114 ALSALILRAV-----EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPM 188 (755)
Q Consensus 114 ~la~l~~~~~-----~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~ 188 (755)
+|..+..... .-...++.++..+.+. ++......+..|..+...-. ..|..+. ...
T Consensus 83 ~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~-----------~~~~~i~------~~g 143 (529)
T 1jdh_A 83 TLHNLSHHREGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQE-----------GAKMAVR------LAG 143 (529)
T ss_dssp HHHHHTTSHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCT-----------THHHHHH------HHT
T ss_pred HHHHHHcCchhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCc-----------chHHHHH------HcC
Confidence 7776643211 0124566777776652 23334445555555554311 1111111 123
Q ss_pred HHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCC---CcHHHHHHHHHH
Q 004414 189 VVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVE 265 (755)
Q Consensus 189 v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~---~~~~~a~~~l~e 265 (755)
++..|.+.+.+. +..++..+..++..|..-.. . ....+.....++.+.+.|.++ .....++.++..
T Consensus 144 ~i~~L~~ll~~~--------~~~~~~~~~~~L~~la~~~~--~-~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~ 212 (529)
T 1jdh_A 144 GLQKMVALLNKT--------NVKFLAITTDCLQILAYGNQ--E-SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 212 (529)
T ss_dssp HHHHHHHGGGCC--------CHHHHHHHHHHHHHHHTTCH--H-HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcC--------CHHHHHHHHHHHHHHHhCCH--H-HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 455555555542 34677888889988875110 0 001123344566666666543 234456666655
Q ss_pred HhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcc
Q 004414 266 LVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWE 345 (755)
Q Consensus 266 ii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~ 345 (755)
+-. ..+....+... +..+.+. ..+.+.+.+..+..+..+..++..... .......++.++.+...+ +.+
T Consensus 213 l~~-~~~~~~~~~~~--g~~~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~i~~L~~ll~~~--~~~ 281 (529)
T 1jdh_A 213 LSV-CSSNKPAIVEA--GGMQALG-LHLTDPSQRLVQNCLWTLRNLSDAATK-----QEGMEGLLGTLVQLLGSD--DIN 281 (529)
T ss_dssp HTT-STTHHHHHHHT--THHHHHH-TTTTSSCHHHHHHHHHHHHHHHTTCTT-----CSCCHHHHHHHHHHTTCS--CHH
T ss_pred Hhc-CcccHHHHHHC--CCHHHHH-HHHhCCChHHHHHHHHHHHHHhcCChh-----hHHHHhHHHHHHHHHcCC--CHH
Confidence 543 23332333211 1111221 234455677777777777766543211 112246677777777664 556
Q ss_pred hhhhcHHHHHHH
Q 004414 346 IADSTLQFWSTL 357 (755)
Q Consensus 346 v~~~~~~FW~~l 357 (755)
+.+.+......+
T Consensus 282 v~~~a~~~L~~L 293 (529)
T 1jdh_A 282 VVTCAAGILSNL 293 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666555443333
No 60
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=83.26 E-value=81 Score=37.34 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=60.5
Q ss_pred cCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 004414 540 EAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSS 619 (755)
Q Consensus 540 ~p~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~ 619 (755)
++.++.+++.+|+++....+..+. | +++.+....-. .. +..+....+.-+|.++.....+ . .+.+..++.|+
T Consensus 714 ~~~irea~~~~~~r~i~~lg~~~~-p-~lp~~i~~ll~--~~--~~~e~~~fL~l~~qli~~f~~~-~-~~~l~~ll~~l 785 (980)
T 3ibv_A 714 NEDIRGAVRFTSGRIINVVGPDML-P-KVPQLISILLN--SI--DMNELVDVLSFISQLIHIYKDN-M-MEITNRMLPTL 785 (980)
T ss_dssp SHHHHHHHHHHHHHHTTTTHHHHT-T-THHHHHHHHHH--HC--CTTTHHHHHHHHHHHHHHTTTT-S-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHccHhHH-H-HHHHHHHHHHh--cC--CHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
Confidence 456899999999999877666654 3 56555443321 22 3445667778888888887766 3 68899999999
Q ss_pred HHHHHhhhccCC
Q 004414 620 YEAIGKLIDGDN 631 (755)
Q Consensus 620 ~~~l~~~~~~~~ 631 (755)
+.++-+.+++..
T Consensus 786 ~~~if~~l~~~~ 797 (980)
T 3ibv_A 786 LMRIFSSLSAAP 797 (980)
T ss_dssp HHHHHHHTTC--
T ss_pred HHHHHHHhcCCC
Confidence 999999988754
No 61
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=82.92 E-value=86 Score=37.40 Aligned_cols=169 Identities=14% Similarity=0.198 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHHhccccccCcchhcc----cchHHHHHh-hc-CCCCcHH-HHHHHHHHHhhcCCCh----hHHHHH
Q 004414 211 DRNRKILRCLLSWVRAGCFTEISQGSLAA----HPLLNFVFN-SL-QVQSSFD-VAIEVLVELVGRHEGL----PQALLC 279 (755)
Q Consensus 211 ~l~~~~l~c~~sWi~~~~~~~~~~~~~~~----~~ll~~~~~-~L-~~~~~~~-~a~~~l~eii~~~~~~----~~~l~~ 279 (755)
.++..+|+.+..|+.-.. +.+ .+. .|+++.++. +- +.|+.++ ....++..++.+.... ...++.
T Consensus 752 ~ik~eil~l~~~~i~~~~----~~~-~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~ 826 (1073)
T 3gjx_A 752 TVKRETLKLISGWVSRSN----DPQ-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD 826 (1073)
T ss_dssp HHHHHHHHHHHHHHTTCS----CHH-HHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC----CHH-HHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 367888889999987431 111 122 344443332 11 1344444 2456666666665332 222332
Q ss_pred hhhh-hHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcCh-hHHHHHHHHHhcccCCCCCcchhhhcHHHHHHH
Q 004414 280 RVPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASP-EALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (755)
Q Consensus 280 ~~~~-l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~-~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l 357 (755)
.+.. ..+.+. .--++-+|...++.+++.++.......+.+-|+ .+..+++.++..+.|+ ++++++..+.+.+.+
T Consensus 827 ~vf~~Tl~mi~--~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~--~r~i~~~~l~~~~~l 902 (1073)
T 3gjx_A 827 AVFECTLNMIN--KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHT--MRNVADTGLQILFTL 902 (1073)
T ss_dssp HHHHHHHHHHS--SCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHH
Confidence 2221 011111 112455788999999999999988777766554 5678999999999997 789999999998888
Q ss_pred HHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhc
Q 004414 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQ 395 (755)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~ 395 (755)
.+.+...+ +.....|+.+|..++..++.-++
T Consensus 903 l~~~~~~~-------~~~~~F~~~~~~~~~~~i~~v~t 933 (1073)
T 3gjx_A 903 LQNVAQEE-------AAAQSFYQTYFCDILQHIFSVVT 933 (1073)
T ss_dssp HHHHTTCH-------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhcCh-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 87653211 13445678888888877766553
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=82.90 E-value=29 Score=32.03 Aligned_cols=134 Identities=12% Similarity=0.012 Sum_probs=77.9
Q ss_pred HHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCch
Q 004414 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRS 495 (755)
Q Consensus 416 ~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~ 495 (755)
.|......+.. +|.+..+..+...+. +.+|..+..++.+++.+++. + .++.+... .+++.
T Consensus 35 vR~~A~~~L~~----~~~~~~~~~L~~~l~-----~~~~~vr~~a~~aL~~~~~~-----~--~~~~L~~~----l~~~~ 94 (211)
T 3ltm_A 35 VRRAAAYALGK----IGDERAVEPLIKALK-----DEDAWVRRAAADALGQIGDE-----R--AVEPLIKA----LKDED 94 (211)
T ss_dssp HHHHHHHHHHH----HCCGGGHHHHHHHTT-----CSCHHHHHHHHHHHHHHCCG-----G--GHHHHHHH----TTCSS
T ss_pred HHHHHHHHHHH----hCCccHHHHHHHHHc-----CCCHHHHHHHHHHHHhhCCH-----H--HHHHHHHH----HcCCC
Confidence 35544444433 344334555554332 35688888888888877531 1 02333332 34554
Q ss_pred hhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccC--chHHHHHHHHHHHHHHhhcccCCCchHHHHHH
Q 004414 496 EELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMW 573 (755)
Q Consensus 496 ~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p--~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~ 573 (755)
+ .+|..+ ++.+|++. .++ .++.+...+.++ .|+..|+.++.++.. +...+.|..
T Consensus 95 ~------~vr~~a-~~aL~~~~-----~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~ 150 (211)
T 3ltm_A 95 G------WVRQSA-AVALGQIG-----DER----AVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIK 150 (211)
T ss_dssp H------HHHHHH-HHHHHHHC-----CGG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHH
T ss_pred H------HHHHHH-HHHHHHhC-----cHH----HHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHHHHH
Confidence 3 367776 48998875 344 345556666665 489999999988731 224444444
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHH
Q 004414 574 IGEALEKRHLPLEDEEEVVGAISLI 598 (755)
Q Consensus 574 ~~~~l~~~~l~~~~~~~l~eai~~v 598 (755)
+.. .-+...|...+++++.+
T Consensus 151 ~l~-----d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 151 ALK-----DEDGWVRQSAADALGEI 170 (211)
T ss_dssp HTT-----CSSHHHHHHHHHHHHHH
T ss_pred HHc-----CCCHHHHHHHHHHHHHh
Confidence 321 22456788888888887
No 63
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=82.67 E-value=19 Score=34.37 Aligned_cols=213 Identities=15% Similarity=0.080 Sum_probs=118.9
Q ss_pred HHHHhccCCChHHHHHHHHHHHH-HhcCh---------HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCC
Q 004414 12 AVHVLNHDTESCNRVAANQWLVQ-FQQTD---------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (755)
Q Consensus 12 av~~ly~~~d~~~~~qA~~~L~~-fq~s~---------~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l 81 (755)
.+..|. ++|++.+..|-..|.. +...+ .+......+|.+.+ .+++..|+.+|.+-...
T Consensus 17 ~~~~L~-s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~------~~v~~~a~~~L~~l~~~----- 84 (252)
T 4db8_A 17 MTQQLN-SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN------EQILQEALWALSNIASG----- 84 (252)
T ss_dssp HHHHHH-SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC------HHHHHHHHHHHHHHTTS-----
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC------HHHHHHHHHHHHHHhcC-----
Confidence 344444 4677777777777743 33222 23455667776543 58999999999876542
Q ss_pred ChHHHHHHH-HHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHhc------ccCchHHHHHHHhhcccCCCchhHHHHHHH
Q 004414 82 QSAAKDALL-NALLVAAKRFS-SGPPQLLTQICLALSALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (755)
Q Consensus 82 ~~~~~~~Lr-~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~------~W~~~i~~li~~~~~~~~~~~~~~~lL~iL 153 (755)
+++.+..+. ...+..+...- .++..++...+.+|+.+..... .-...++.++..+.+. ++......+..|
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L 162 (252)
T 4db8_A 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWAL 162 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHH
Confidence 233333333 33555554432 3557788888888888764321 1234667777777542 333444555555
Q ss_pred hhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccC
Q 004414 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (755)
Q Consensus 154 ~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~ 233 (755)
..+...- +..+..+ .. ..++..|.+.+.+. ++.++..++.++.+-.... .-.
T Consensus 163 ~~l~~~~-----------~~~~~~~----~~--~~~i~~L~~ll~~~--------~~~v~~~a~~~L~~l~~~~---~~~ 214 (252)
T 4db8_A 163 SNIASGG-----------NEQIQAV----ID--AGALPALVQLLSSP--------NEQILQEALWALSNIASGG---NEQ 214 (252)
T ss_dssp HHHTTSC-----------HHHHHHH----HH--TTCHHHHHHGGGCS--------SHHHHHHHHHHHHHHTTSC---HHH
T ss_pred HHHHcCC-----------hHHHHHH----HH--CCCHHHHHHHHCCC--------CHHHHHHHHHHHHHHhcCC---HHH
Confidence 5554321 1111111 11 23445555555542 3568888888888765321 000
Q ss_pred cchhcccchHHHHHhhcCC--CCcHHHHHHHHHHH
Q 004414 234 QGSLAAHPLLNFVFNSLQV--QSSFDVAIEVLVEL 266 (755)
Q Consensus 234 ~~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~ei 266 (755)
...+.....++.+.+.+.+ ++++..|+.++..+
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 1123455677888888875 45677777777654
No 64
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.06 E-value=17 Score=33.47 Aligned_cols=134 Identities=10% Similarity=0.019 Sum_probs=73.1
Q ss_pred HHHHHhHHHHHHHHhcCcHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCch
Q 004414 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRS 495 (755)
Q Consensus 416 ~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~ 495 (755)
.|......+.. +|....+..+...+. +.++..+.+++.+++.+++. . .++.+.. +.+++.
T Consensus 61 vr~~a~~~L~~----~~~~~~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~~-----~--~~~~L~~----~l~d~~ 120 (201)
T 3ltj_A 61 VRRAAADALGQ----IGDERAVEPLIKALK-----DEDGWVRQSAAVALGQIGDE-----R--AVEPLIK----ALKDED 120 (201)
T ss_dssp HHHHHHHHHHH----HCCGGGHHHHHHHTT-----CSSHHHHHHHHHHHHHHCCG-----G--GHHHHHH----HTTCSS
T ss_pred HHHHHHHHHHh----hCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHhCcH-----H--HHHHHHH----HHcCCC
Confidence 35555444433 243334454444332 35677788888888876431 0 0233333 234554
Q ss_pred hhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccC--chHHHHHHHHHHHHHHhhcccCCCchHHHHHH
Q 004414 496 EELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMW 573 (755)
Q Consensus 496 ~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p--~v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~ 573 (755)
+ .+|..+ ++.+|++. .++. ++.+...+.++ .++..|+.++.++. .+...+.|..
T Consensus 121 ~------~vr~~a-~~aL~~~~-----~~~~----~~~L~~~l~d~~~~vr~~A~~aL~~~~--------~~~~~~~L~~ 176 (201)
T 3ltj_A 121 W------FVRIAA-AFALGEIG-----DERA----VEPLIKALKDEDGWVRQSAADALGEIG--------GERVRAAMEK 176 (201)
T ss_dssp H------HHHHHH-HHHHHHHT-----CGGG----HHHHHHHTTCSSHHHHHHHHHHHHHHC--------SHHHHHHHHH
T ss_pred H------HHHHHH-HHHHHHhC-----CHHH----HHHHHHHHcCCCHHHHHHHHHHHHHhC--------chhHHHHHHH
Confidence 3 367666 48888775 3443 44455556554 48889999988872 1223444444
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHH
Q 004414 574 IGEALEKRHLPLEDEEEVVGAISLI 598 (755)
Q Consensus 574 ~~~~l~~~~l~~~~~~~l~eai~~v 598 (755)
+.. .. +...|....++++.+
T Consensus 177 ~l~---d~--~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 177 LAE---TG--TGFARKVAVNYLETH 196 (201)
T ss_dssp HHH---HC--CHHHHHHHHHHHHHC
T ss_pred HHh---CC--CHHHHHHHHHHHHHH
Confidence 432 22 455677777777654
No 65
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=75.39 E-value=1.1e+02 Score=34.14 Aligned_cols=265 Identities=14% Similarity=0.043 Sum_probs=136.5
Q ss_pred ChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHH------HHHHHHHHHHHHhcCCChHHHHHH
Q 004414 38 TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD------ALLNALLVAAKRFSSGPPQLLTQI 111 (755)
Q Consensus 38 s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~------~Lr~~Ll~~l~~~~~~~~~v~~kL 111 (755)
...+......+|.+.+ ..+|..|+.+|.+-.... +.+. ..-..|++.+.. .....++..-
T Consensus 12 ~~g~i~~Lv~lL~~~~------~~vr~~A~~~L~~La~~~------~~~~~i~~~~~~i~~Lv~~L~~--~~~~~~~~~A 77 (644)
T 2z6h_A 12 ATRAIPELTKLLNDED------QVVVNKAAVMVHQLSKKE------ASRHAIMRSPQMVSAIVRTMQN--TNDVETARCT 77 (644)
T ss_dssp CTTTHHHHHHHHTCSC------HHHHHHHHHHHHHHHTST------THHHHHTTCHHHHHHHHHHHHS--CCCHHHHHHH
T ss_pred hhchHHHHHHHHcCCC------HHHHHHHHHHHHHHHCCC------hhHHHHHhccChHHHHHHHHhc--CCCHHHHHHH
Confidence 3445677777886543 588999999997755432 1121 122333333332 1245666666
Q ss_pred HHHHHHHHHHhc-----ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhch
Q 004414 112 CLALSALILRAV-----EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHT 186 (755)
Q Consensus 112 ~~~la~l~~~~~-----~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~ 186 (755)
+.+|..+..... .=...++.++..+.+. ++......+..|..+...-. ..+..+ . .
T Consensus 78 ~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~-----------~~~~~v----~--~ 138 (644)
T 2z6h_A 78 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQE-----------GAKMAV----R--L 138 (644)
T ss_dssp HHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHST-----------THHHHH----H--H
T ss_pred HHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcc-----------hhHHHH----H--H
Confidence 666765543211 0124566677766542 23334444555555443211 111111 1 1
Q ss_pred hHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCCC---cHHHHHHHH
Q 004414 187 PMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQS---SFDVAIEVL 263 (755)
Q Consensus 187 ~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~---~~~~a~~~l 263 (755)
..++..|.+.+.+. +..++..+.+|+..|..-. .-....+.....++.+.+.|.+.+ .+..++.++
T Consensus 139 ~g~i~~Lv~lL~~~--------~~~~~~~a~~~L~~La~~~---~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L 207 (644)
T 2z6h_A 139 AGGLQKMVALLNKT--------NVKFLAITTDCLQILAYGN---QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207 (644)
T ss_dssp TTHHHHHHHGGGCC--------CHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHCcC--------CHHHHHHHHHHHHHHHhcC---cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHH
Confidence 23455566666542 2457778888998887511 000112344566777777777643 345566666
Q ss_pred HHHhhcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCC
Q 004414 264 VELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSED 343 (755)
Q Consensus 264 ~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d 343 (755)
..+-. +......++.. +..+.+. ..+.+.+.+..+..+..+..++..... .......++.++.+...+ +
T Consensus 208 ~nLs~-~~~~~~~l~~~--g~l~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~-----~~~~~~~i~~Lv~lL~~~--d 276 (644)
T 2z6h_A 208 KVLSV-CSSNKPAIVEA--GGMQALG-LHLTDPSQRLVQNCLWTLRNLSDAATK-----QEGMEGLLGTLVQLLGSD--D 276 (644)
T ss_dssp HHHTT-CTTHHHHHHHT--THHHHHH-TTTTCSCHHHHHHHHHHHHHHGGGCTT-----CCSCHHHHHHHHHHTTCS--C
T ss_pred HHHhc-CcccHHHHHHC--CCHHHHH-HHHhcCCHHHHHHHHHHHHHHhhcchh-----hhhhhhHHHHHHHHHcCC--C
Confidence 66543 23333333321 1111221 234455677777778877777644211 112246777888887764 5
Q ss_pred cchhhhcHHHHHHH
Q 004414 344 WEIADSTLQFWSTL 357 (755)
Q Consensus 344 ~~v~~~~~~FW~~l 357 (755)
.++.+.+..-...|
T Consensus 277 ~~v~~~a~~aL~~L 290 (644)
T 2z6h_A 277 INVVTCAAGILSNL 290 (644)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666555443334
No 66
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=74.77 E-value=70 Score=31.72 Aligned_cols=182 Identities=17% Similarity=0.141 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHhccC-----------CChHHHHHHHHHHHHHhcCh---------HHHHHHHH-hhcCCCCCCCcchhH
Q 004414 4 DLQIKVAQAVHVLNHD-----------TESCNRVAANQWLVQFQQTD---------AAWEIATS-ILTSDRQSFLTDFEV 62 (755)
Q Consensus 4 ~~~~~v~~av~~ly~~-----------~d~~~~~qA~~~L~~fq~s~---------~aw~~~~~-LL~~~~~~~~~~~~v 62 (755)
+...+..+++..|-++ .+.+.|..|-.-|..+-... .+|..... +|.++ +.++
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~------~~~v 98 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG------AAGL 98 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS------SHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC------CHHH
Confidence 4566788888888642 12356777777777776643 24666777 77654 3599
Q ss_pred HHHHHHHHHHHHhcccCCCChHHHHH-HHH----HHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcc------cCchHHH
Q 004414 63 EFFAAQILKRKIQNEGYYLQSAAKDA-LLN----ALLVAAKRFSSGPPQLLTQICLALSALILRAVE------HGKPIEK 131 (755)
Q Consensus 63 ~ffaa~tL~~ki~~~~~~l~~~~~~~-Lr~----~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~ 131 (755)
|..|+.+|.+-... +++.+.. ++. .|++.+.. ..+..++++.+-+|+.+....+. -.+.++-
T Consensus 99 r~~Aa~~Lg~ia~~-----n~~~~~~vv~~g~l~~Ll~LL~~--~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~ 171 (296)
T 1xqr_A 99 RWRAAQLIGTCSQN-----VAAIQEQVLGLGALRKLLRLLDR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171 (296)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhC-----CHHHHHHHHHCCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence 99999999886653 3333332 232 33333332 23567999999999988754321 1245666
Q ss_pred HHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhh
Q 004414 132 LFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHD 211 (755)
Q Consensus 132 li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~ 211 (755)
++..+++. +.....-....|..+...- ++.+..+ .. ..++..|...+.+. +..
T Consensus 172 L~~lL~~~--d~~v~~~A~~aLs~L~~~~-----------~~~~~~v----v~--~g~i~~Lv~LL~~~--------d~~ 224 (296)
T 1xqr_A 172 LMRAMQQQ--VQKLKVKSAFLLQNLLVGH-----------PEHKGTL----CS--MGMVQQLVALVRTE--------HSP 224 (296)
T ss_dssp HHHHHHSS--CHHHHHHHHHHHHHHHHHC-----------GGGHHHH----HH--TTHHHHHHHHHTSC--------CST
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHhCC-----------hHHHHHH----HH--cCCHHHHHHHHcCC--------Chh
Confidence 66666542 2333333444444444321 0111111 11 12334444444442 346
Q ss_pred hHHHHHHHHHHHHH
Q 004414 212 RNRKILRCLLSWVR 225 (755)
Q Consensus 212 l~~~~l~c~~sWi~ 225 (755)
++..++.++.+-+.
T Consensus 225 v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 225 FHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999988776
No 67
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=71.23 E-value=1.5e+02 Score=34.01 Aligned_cols=446 Identities=15% Similarity=0.068 Sum_probs=209.2
Q ss_pred chhHHHHHHHHHHHHHhcccCCCC-hHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHhc-------ccCchH
Q 004414 59 DFEVEFFAAQILKRKIQNEGYYLQ-SAAKDALLNALLVAAKR-FSSGPPQLLTQICLALSALILRAV-------EHGKPI 129 (755)
Q Consensus 59 ~~~v~ffaa~tL~~ki~~~~~~l~-~~~~~~Lr~~Ll~~l~~-~~~~~~~v~~kL~~~la~l~~~~~-------~W~~~i 129 (755)
..++|.-++..|..-.. .+- ...++.-++..-+++.. +..+..--.-+-+.+++.++--.+ ....++
T Consensus 217 ~~~~r~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v 292 (810)
T 3now_A 217 TGSSSTIASVCLARIYE----NMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGIL 292 (810)
T ss_dssp CTTHHHHHHHHHHHHHH----TCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHH
T ss_pred ChhHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchH
Confidence 46788888877744322 232 22234444444444443 222221112223555555542211 266788
Q ss_pred HHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcch
Q 004414 130 EKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQL 209 (755)
Q Consensus 130 ~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~ 209 (755)
+.++..+++. +.......++.+..+... ...|..+++ . .+ ..|...+.+ ++
T Consensus 293 ~~li~Ll~s~--~~~~q~~A~~al~~aa~~------------~~~R~~I~~----~--gv-~~L~~Ll~s--------~~ 343 (810)
T 3now_A 293 QMILAMATTD--DELQQRVACECLIAASSK------------KDKAKALCE----Q--GV-DILKRLYHS--------KN 343 (810)
T ss_dssp HHHHHHHHSS--CHHHHHHHHHHHHHHTTS------------HHHHHTTHH----H--HH-HHHHHHTTC--------SC
T ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHHcCC------------cHHHHHHHH----c--Cc-HHHHHHHcC--------CC
Confidence 8888888763 233334555555443322 122332222 1 22 555555543 12
Q ss_pred hhhHHHHHHHHHHHHHhcc-ccccC-cchhcccchHHHHHhhcCC----CCcHHHHHHHHHHHhhcCCC---hh--HHHH
Q 004414 210 HDRNRKILRCLLSWVRAGC-FTEIS-QGSLAAHPLLNFVFNSLQV----QSSFDVAIEVLVELVGRHEG---LP--QALL 278 (755)
Q Consensus 210 ~~l~~~~l~c~~sWi~~~~-~~~~~-~~~~~~~~ll~~~~~~L~~----~~~~~~a~~~l~eii~~~~~---~~--~~l~ 278 (755)
..++..++-++...-..+. -...+ .+.....++++.+.+.|.+ ++.+..|+++|..+...... +. .-.+
T Consensus 344 ~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~I 423 (810)
T 3now_A 344 DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASI 423 (810)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchH
Confidence 4567777777766432110 00001 0111123566666666654 46788899999887654321 11 1122
Q ss_pred HhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHHh-----------------------------------hHHHHhcC
Q 004414 279 CRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAA-----------------------------------PSLIVEAS 323 (755)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~~-----------------------------------~~~l~~~~ 323 (755)
+.+..+ +.++|.........++..+...+ +..+.+
T Consensus 424 p~LV~L--------L~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve-- 493 (810)
T 3now_A 424 HALMDL--------ARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN-- 493 (810)
T ss_dssp HHHHHH--------HHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHH--------hCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH--
Confidence 222221 11223333334444444443321 111111
Q ss_pred hhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHHHHhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCC
Q 004414 324 PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFND 403 (755)
Q Consensus 324 ~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~~~~~~ 403 (755)
.+.++.+..+...+ +.++.+.+......+... .+ . +...... . .++.++..+. +.
T Consensus 494 ---aGaVp~LV~LL~s~--s~~vqe~Aa~aL~NLA~d-----~~-~--r~~Vv~~--G----aip~Lv~LL~--s~---- 548 (810)
T 3now_A 494 ---EGITTALCALAKTE--SHNSQELIARVLNAVCGL-----KE-L--RGKVVQE--G----GVKALLRMAL--EG---- 548 (810)
T ss_dssp ---TTHHHHHHHHHTCC--CHHHHHHHHHHHHHHHTS-----HH-H--HHHHHHT--T----HHHHHHHHHH--SS----
T ss_pred ---CcCHHHHHHHHcCC--CHHHHHHHHHHHHHHcCC-----HH-H--HHHHHHC--C----CHHHHHHHHc--cC----
Confidence 13567777777775 557777777666665532 10 0 1111111 1 1222222221 11
Q ss_pred CCCCCCCchHHHHHHHHhHHHHHHHHhcCcHH---------HHHHHHHHhhcCCCCCCChhhhHHHHHHHHhhhhhcccc
Q 004414 404 DGMVDLPDGLVQFRMNLVELLVDICQLLRSAT---------FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (755)
Q Consensus 404 ~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~---------~l~~~~~~~~~~~~~~~~W~~~EA~L~~l~~iae~~~~~ 474 (755)
+ ...|...+-.+..++....++. .+..+.. +.. ...+-.....++++|+.++..-...
T Consensus 549 --~-------~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~-LL~---~~~~~l~~~eAl~AL~NLa~~~d~~ 615 (810)
T 3now_A 549 --T-------EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLN-LLQ---QDCTALENFESLMALTNLASMNESV 615 (810)
T ss_dssp --C-------HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHH-TTS---TTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred --C-------HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHH-HhC---CCCcHHHHHHHHHHHHHHhcCCHHH
Confidence 0 1235555556666544322221 1222222 222 1123233334688999888653210
Q ss_pred CCc----cchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccch--HHHHHHHHHhccc--CchHHH
Q 004414 475 GQA----FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA--RPLLLFLAAGISE--AVSSNA 546 (755)
Q Consensus 475 ~~~----~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l--~~~l~~l~~~l~~--p~v~~~ 546 (755)
... ..++.+..++ .++++ .++..+ +++|+..+.--.....+. ...++.|+.-+.. ..++..
T Consensus 616 ~~~Ii~aG~l~~Lv~LL----~s~~~------~Vq~~A-~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~ 684 (810)
T 3now_A 616 RQRIIKEQGVSKIEYYL----MEDHL------YLTRAA-AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATA 684 (810)
T ss_dssp HHHHHHTTHHHHHHHHH----HSCCT------THHHHH-HHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH----cCCCH------HHHHHH-HHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHH
Confidence 000 0123333332 23333 255555 588887763111111122 1356666666654 448999
Q ss_pred HHHHHHHHHHH----hhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 004414 547 CASALRKICED----ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (755)
Q Consensus 547 Aa~al~~l~~~----c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (755)
|+.|+.+++.. ++..+.....++.|..+.. . -+.+.+.....+++.++..
T Consensus 685 Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~---s--~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 685 CAGALAIITSVSVKCCEKILAIASWLDILHTLIA---N--PSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT---C--SSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC---C--CCHHHHHHHHHHHHHHHhC
Confidence 99999999973 3333321345566665543 2 2667788899999998874
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=70.96 E-value=16 Score=33.44 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=75.1
Q ss_pred HHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhc
Q 004414 459 TKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGI 538 (755)
Q Consensus 459 A~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l 538 (755)
-.-|++.-|+..-+. . ++.++.=+..+...|... =+.++ +..|+..+ .+|+.+..|-|+-++.-|
T Consensus 126 n~~yaLeeIaranP~----l-~~~v~rdi~smltskd~~------Dkl~a-LnFi~alG---en~~~yv~PfLprL~aLL 190 (253)
T 2db0_A 126 NVSYALEEIAKANPM----L-MASIVRDFMSMLSSKNRE------DKLTA-LNFIEAMG---ENSFKYVNPFLPRIINLL 190 (253)
T ss_dssp HHHHHHHHHHHHCHH----H-HHHHHHHHHHHTSCSSHH------HHHHH-HHHHHTCC---TTTHHHHGGGHHHHHGGG
T ss_pred cHHHHHHHHHHhChH----H-HHHHHHHHHHHhcCCChH------HHHHH-HHHHHHHh---ccCccccCcchHHHHHHH
Confidence 334666666543221 1 355555555555555432 14444 58888887 467888888888888888
Q ss_pred ccCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 004414 539 SEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (755)
Q Consensus 539 ~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (755)
.|.+ |+.+|..++-+++...++ .-..+....+.+ ...+...+..+.||++.++-
T Consensus 191 ~D~deiVRaSaVEtL~~lA~~npk------lRkii~~kl~e~--~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 191 HDGDEIVRASAVEALVHLATLNDK------LRKVVIKRLEEL--NDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GCSSHHHHHHHHHHHHHHHTSCHH------HHHHHHHHHHHC--CCSCHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 8765 888999999998855433 222333333332 23355668899999999864
No 69
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=67.23 E-value=8.3 Score=32.93 Aligned_cols=75 Identities=5% Similarity=0.084 Sum_probs=46.8
Q ss_pred CChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHH
Q 004414 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLL 531 (755)
Q Consensus 452 ~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l 531 (755)
.+|.-+..++++++.+++. . .++.+...+ +++.+ .||..++ +.+|++. . +.++
T Consensus 54 ~~~~vR~~A~~aL~~~~~~-----~--a~~~L~~~L----~d~~~------~VR~~A~-~aL~~~~-----~----~~a~ 106 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDE-----R--AVEPLIKLL----EDDSG------FVRSGAA-RSLEQIG-----G----ERVR 106 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSH-----H--HHHHHHHHH----HHCCT------HHHHHHH-HHHHHHC-----S----HHHH
T ss_pred CCHHHHHHHHHHHHhcCCH-----H--HHHHHHHHH----cCCCH------HHHHHHH-HHHHHhC-----c----HHHH
Confidence 5688888889888877531 0 023333333 23433 3677764 9999875 2 3355
Q ss_pred HHHHHhccc--CchHHHHHHHHHH
Q 004414 532 LFLAAGISE--AVSSNACASALRK 553 (755)
Q Consensus 532 ~~l~~~l~~--p~v~~~Aa~al~~ 553 (755)
+.|...+.+ +.|+..|+.++.+
T Consensus 107 ~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 107 AAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Confidence 666666665 4588888888754
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.79 E-value=92 Score=28.45 Aligned_cols=173 Identities=18% Similarity=0.088 Sum_probs=101.6
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHH
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~ 88 (755)
+...+..| .++|+..|..|-..|.++. .+++......+|.+. +..+|..|+..|... . +++....
T Consensus 21 ~~~L~~~L-~~~~~~vR~~A~~~L~~~~-~~~~~~~L~~~l~~~------~~~vr~~a~~aL~~~-~------~~~~~~~ 85 (211)
T 3ltm_A 21 VEMYIKNL-QDDSYYVRRAAAYALGKIG-DERAVEPLIKALKDE------DAWVRRAAADALGQI-G------DERAVEP 85 (211)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCS------CHHHHHHHHHHHHHH-C------CGGGHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHcCC------CHHHHHHHHHHHHhh-C------CHHHHHH
Confidence 44455555 4689999999999999987 467778888888754 358999999999653 1 1222222
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhh---------
Q 004414 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE--------- 159 (755)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE--------- 159 (755)
|+..+. .....|+...+.+|+.+. .+..++.++..+... ++.........|..+..+
T Consensus 86 ----L~~~l~---~~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~~ 151 (211)
T 3ltm_A 86 ----LIKALK---DEDGWVRQSAAVALGQIG-----DERAVEPLIKALKDE--DWFVRIAAAFALGEIGDERAVEPLIKA 151 (211)
T ss_dssp ----HHHHTT---CSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred ----HHHHHc---CCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222222 344667777777776542 345666677666432 222233334444433321
Q ss_pred cccccccccCCCHHHHHHHHHHHHh-chhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHH
Q 004414 160 VIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVR 225 (755)
Q Consensus 160 ~~~~~~~~~~~~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~ 225 (755)
+.| -....|......+.. ..+.+...|.+.+.+. ++.++..+.+++...-.
T Consensus 152 l~d-------~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--------~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 152 LKD-------EDGWVRQSAADALGEIGGERVRAAMEKLAETG--------TGFARKVAVNYLETHKS 203 (211)
T ss_dssp TTC-------SSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC--------CHHHHHHHHHHHHC---
T ss_pred HcC-------CCHHHHHHHHHHHHHhCchhHHHHHHHHHhCC--------CHHHHHHHHHHHHhcCC
Confidence 111 123445555555554 3466777777777652 35688888888775433
No 71
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=61.16 E-value=1.2e+02 Score=29.37 Aligned_cols=168 Identities=14% Similarity=0.096 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhc
Q 004414 60 FEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAK-RFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQN 138 (755)
Q Consensus 60 ~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~-~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~li~~~~~ 138 (755)
..-+.=|...|...+.. .++.....-+-++.|+. ++...+..|..+....|..++-.+. .
T Consensus 60 ~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~--------------~ 120 (266)
T 2of3_A 60 FKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIR--------------D 120 (266)
T ss_dssp HHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH--------------h
Confidence 35555677777776553 23333333444677775 4445566677777766666543322 1
Q ss_pred ccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHH---Hh--chhHHHHHHHHhhhcccCCCCCcchhhhH
Q 004414 139 LQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQEL---LS--HTPMVVEFLMQQSDKRFDGGVPVQLHDRN 213 (755)
Q Consensus 139 ~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l---~~--~~~~v~~~l~~~l~~~~~~~~~~~~~~l~ 213 (755)
.+ ....-.-...++-.|.|-++|.+ +.-|..+++.+ .. ..+.|+..+...+.+ .+...+
T Consensus 121 ~~-y~~~~~ea~~~lP~LveKlGd~k-------~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ks--------KN~R~R 184 (266)
T 2of3_A 121 TE-TPMSQEEVSAFVPYLLLKTGEAK-------DNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKS--------KNARQR 184 (266)
T ss_dssp TT-CCCCHHHHHHHHHHHHHGGGCSS-------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGC--------SCHHHH
T ss_pred cc-ccchHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHcc--------CCHHHH
Confidence 00 00000112223344445555432 23344433322 22 234477888777755 345789
Q ss_pred HHHHHHHHHHHHhccccccCcchhcccchH---HHHHhhcCCC--CcHHHHHHHHHHHhhcC
Q 004414 214 RKILRCLLSWVRAGCFTEISQGSLAAHPLL---NFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (755)
Q Consensus 214 ~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll---~~~~~~L~~~--~~~~~a~~~l~eii~~~ 270 (755)
..++.++.+-+.-. +++. ...+ +.+...+.++ ++|++|+.|++++...-
T Consensus 185 ~e~l~~l~~li~~~---G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 185 SECLLVIEYYITNA---GISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHHHHHHHHH---CSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999988742 2221 2345 7788888875 48999999999987653
No 72
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=61.11 E-value=52 Score=34.86 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=36.0
Q ss_pred HHHHHhhHHHHHhCccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHH
Q 004414 510 ADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED 557 (755)
Q Consensus 510 ~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~ 557 (755)
...|.+|.. .-|++-..+++.++.-..+.+ ++..|-+.+-.||++
T Consensus 49 aQ~I~kffk---~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~ 95 (507)
T 3u0r_A 49 AQFIPKFFK---HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG 95 (507)
T ss_dssp HHHHHHHGG---GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT
T ss_pred HHHHHHHHh---hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh
Confidence 488888864 458988999999998887654 788888888888876
No 73
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=49.50 E-value=81 Score=30.67 Aligned_cols=137 Identities=9% Similarity=0.015 Sum_probs=73.8
Q ss_pred CCCChhhhHHHHHHHHhhhhhccccC--Ccc--chHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhC--
Q 004414 450 VPIPWKEVETKLFALNVVSEVVLQEG--QAF--DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF-- 523 (755)
Q Consensus 450 ~~~~W~~~EA~L~~l~~iae~~~~~~--~~~--~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~-- 523 (755)
.+.+|..+..++-.+..+-+...... +.. .+..+..++.....+.+. .+...+ +.++..+.......
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~------~v~~~a-l~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV------VAQEQA-IVALNSLIDAFASSSL 91 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH------HHHHHH-HHHHHHHHTTCC---C
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH------HHHHHH-HHHHHHHHHHhhhhhc
Confidence 35789999999988876554333211 100 012233445555556553 244444 47777666433211
Q ss_pred -----ccchHHHHHHHHH-hcccCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 004414 524 -----QTNARPLLLFLAA-GISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAI 595 (755)
Q Consensus 524 -----p~~l~~~l~~l~~-~l~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai 595 (755)
..+...+++.++. ++.+++ ++..|..++..+++.+... ...+..+...+ ..-.+..+...+..+
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l--~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------TQSVELVIPFF--EKKLPKLIAAAANCV 163 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGG--GCSCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHH--hccCHHHHHHHHHHH
Confidence 1245667777775 477654 6777778888887655421 11112222222 122466777777778
Q ss_pred HHHHcc
Q 004414 596 SLILGS 601 (755)
Q Consensus 596 ~~vi~~ 601 (755)
+.++..
T Consensus 164 ~~~l~~ 169 (278)
T 4ffb_C 164 YELMAA 169 (278)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 74
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=45.62 E-value=1.8e+02 Score=29.55 Aligned_cols=182 Identities=13% Similarity=0.077 Sum_probs=91.4
Q ss_pred HHHhHHHHHHHhhHHHHHhCccc---hHHHHHHHHHhccc--CchHHHHHHHHHHHHH----HhhcccCCCchHHHHHHH
Q 004414 504 IVYRSLADVIGSYSKWISAFQTN---ARPLLLFLAAGISE--AVSSNACASALRKICE----DASALIDEPSNLEILMWI 574 (755)
Q Consensus 504 v~~~t~~~~ig~y~~~~~~~p~~---l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~----~c~~~l~~~~~~~~l~~~ 574 (755)
++..+ +++|...+.--..+... ...+++.|++-|.. ++++..|+.++++++. +++..+.....++.|..+
T Consensus 100 ~q~~A-a~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~l 178 (354)
T 3nmw_A 100 LRRYA-GMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 178 (354)
T ss_dssp HHHHH-HHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHH-HHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHH
Confidence 55555 48888776311112222 24678888888865 4699999999999985 244444322345555554
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHH
Q 004414 575 GEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLY 654 (755)
Q Consensus 575 ~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 654 (755)
.. .. -+.+.+.....++..+....+..+ ..... ....+..|-+++....+. .. .+....+...|.
T Consensus 179 L~---~~-~~~~~~~~A~~aL~nLs~~~~~nk--~~i~~--~~Gai~~Lv~lL~~~~~~---~~----~~v~~~A~~aL~ 243 (354)
T 3nmw_A 179 AL---EV-KKESTLKSVLSALWNLSAHCTENK--ADICA--VDGALAFLVGTLTYRSQT---NT----LAIIESGGGILR 243 (354)
T ss_dssp HH---HC-CCHHHHHHHHHHHHHHHTTCHHHH--HHHHH--STTHHHHHHHHTTCCCSS---SC----CHHHHHHHHHHH
T ss_pred Hh---cC-CCHHHHHHHHHHHHHHHccChhhh--HHHHH--hcCcHHHHHHHhccCCCc---cc----HHHHHHHHHHHH
Confidence 32 11 144566677777777765322211 22110 122333333344322110 00 011233445555
Q ss_pred hhhhhcccccccCCCCCCCCchHHHHH-HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 004414 655 RMGTVFSHLPVPLPTNPAGDDPIFALL-RVFWPMLEKLFRSEHMENGNLSTAACRALSLAI 714 (755)
Q Consensus 655 ~L~~~f~~l~~~~~~~~~~~~p~~~~~-~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~ 714 (755)
.|+.....-. .-...+. ....|.+..++.. ++.++.+.++.++..+.
T Consensus 244 nLs~~~a~~~----------~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 244 NVSSLIATNE----------DHRQILRENNCLQTLLQHLKS---HSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHHHHHTTCH----------HHHHHHHTTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHT
T ss_pred HHHhhccCCH----------HHHHHHHHcCCHHHHHHHHcC---CChHHHHHHHHHHHHHh
Confidence 5543211100 0011122 2345666666652 46788888888888876
No 75
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=41.16 E-value=3.3e+02 Score=31.73 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=32.6
Q ss_pred HHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhc
Q 004414 503 HIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASA 560 (755)
Q Consensus 503 ~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~~c~~ 560 (755)
.+|+.++ ..+|..+ ..+|. +.++..|.+-.+|++ |+..|+.|+-.+-.....
T Consensus 627 ~VR~gAa-lALGli~---aGn~~--~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 627 HVRCGTA-FALGIAC---AGKGL--QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHHHH-HHHHHHT---SSSCC--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHHHH-HHHHHhc---cCCCc--HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 3677764 7888665 22342 556665555566654 788888888877655443
No 76
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=37.39 E-value=61 Score=33.15 Aligned_cols=143 Identities=12% Similarity=0.070 Sum_probs=71.9
Q ss_pred CChhhhHHHHHHHHhhhhhccccCCcc--chHHHHHHHHHhccCchhh-hhhHHHHHHhHHHHHHHhhHHHHHhCccchH
Q 004414 452 IPWKEVETKLFALNVVSEVVLQEGQAF--DFSVIMQLVAVLSASRSEE-LKGFMHIVYRSLADVIGSYSKWISAFQTNAR 528 (755)
Q Consensus 452 ~~W~~~EA~L~~l~~iae~~~~~~~~~--~l~~i~~ll~~l~~~~~~~-~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~ 528 (755)
.+....|.++.++..++.......... .-.-+..++..+ .++.+. .. .++..+ ++++...+.++..+++.-.
T Consensus 183 ~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL-~~~~~~~~~---~v~~~A-~~aL~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL-TYRSQTNTL---AIIESG-GGILRNVSSLIATNEDHRQ 257 (354)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHT-TCCCSSSCC---HHHHHH-HHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHh-ccCCCcccH---HHHHHH-HHHHHHHHhhccCCHHHHH
Confidence 356778888888887765332110000 001222233333 222211 00 134444 4777777665444444221
Q ss_pred -----HHHHHHHHhcccC--chHHHHHHHHHHHHHH---hhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 004414 529 -----PLLLFLAAGISEA--VSSNACASALRKICED---ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (755)
Q Consensus 529 -----~~l~~l~~~l~~p--~v~~~Aa~al~~l~~~---c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~v 598 (755)
..++.|+.-|.++ +++..|+.++.+++.. .+..+.....++.|..+.. .+ +.+.+.....++..+
T Consensus 258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~---s~--~~~i~~~A~~aL~nL 332 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH---SK--HKMIAMGSAAALRNL 332 (354)
T ss_dssp HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT---CS--SHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh---CC--CHHHHHHHHHHHHHH
Confidence 3566777777654 4899999999999832 2222211112333333221 11 345566777777777
Q ss_pred HccCCc
Q 004414 599 LGSVSN 604 (755)
Q Consensus 599 i~~~p~ 604 (755)
...-|.
T Consensus 333 ~~~~~~ 338 (354)
T 3nmw_A 333 MANRPA 338 (354)
T ss_dssp HTTCCG
T ss_pred HcCCHH
Confidence 766444
No 77
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=35.08 E-value=1.4e+02 Score=31.61 Aligned_cols=109 Identities=12% Similarity=0.019 Sum_probs=63.5
Q ss_pred HHHhHHHHHHHhhHHHHHhCcc---ch--HHHHHHHHHhccc--CchHHHHHHHHHHHHH---HhhcccCCCchHHHHHH
Q 004414 504 IVYRSLADVIGSYSKWISAFQT---NA--RPLLLFLAAGISE--AVSSNACASALRKICE---DASALIDEPSNLEILMW 573 (755)
Q Consensus 504 v~~~t~~~~ig~y~~~~~~~p~---~l--~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~---~c~~~l~~~~~~~~l~~ 573 (755)
++..+ ++.++.++. .++. .+ ...++.|++.|.+ ++++..|+.+|++++. +++..+.....++.|..
T Consensus 18 ~q~~A-~~~L~~l~~---~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~ 93 (457)
T 1xm9_A 18 YQAIG-AYYIQHTCF---QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVS 93 (457)
T ss_dssp HHHHH-HHHHHHHTS---SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHH-HHHHHHHHc---CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Confidence 34444 478877662 2222 11 2457777777765 4589999999999993 45544432235666666
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHH
Q 004414 574 IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAI 623 (755)
Q Consensus 574 ~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l 623 (755)
+... .-+.+.+.....+++.+... +..+ ...++..+.+++.-+
T Consensus 94 lL~~----~~~~~~~~~a~~aL~nLa~~-~~~~--~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 94 LLRR----TGNAEIQKQLTGLLWNLSST-DELK--EELIADALPVLADRV 136 (457)
T ss_dssp HHTT----CCCHHHHHHHHHHHHHHHTS-SSTH--HHHHHHHHHHHHHHT
T ss_pred HHhh----CCCHHHHHHHHHHHHHHhcC-HHhH--HHHHhccHHHHHHHH
Confidence 5431 12456788888888888876 4332 222334444444444
No 78
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=34.60 E-value=4.3e+02 Score=27.79 Aligned_cols=249 Identities=13% Similarity=0.031 Sum_probs=131.7
Q ss_pred hccCCChHHHHHHHHHHHHHhcCh----------HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHH
Q 004414 16 LNHDTESCNRVAANQWLVQFQQTD----------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (755)
Q Consensus 16 ly~~~d~~~~~qA~~~L~~fq~s~----------~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~ 85 (755)
+..++|+..|..|-..|..+-..+ .+......+|.+.+ +.+++..|+..|++- .. .++.
T Consensus 25 lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~-----~~~~~~~a~~~L~~l-s~-----~~~~ 93 (529)
T 1jdh_A 25 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-----DVETARCTAGTLHNL-SH-----HREG 93 (529)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHH-TT-----SHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC-----CHHHHHHHHHHHHHH-Hc-----Cchh
Confidence 344679999999999998876543 44555666665432 358999999999873 32 1233
Q ss_pred HHHHHH-HHHHHHHHhc-CCChHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 004414 86 KDALLN-ALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (755)
Q Consensus 86 ~~~Lr~-~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~------W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (755)
+..+.+ ..+..+...- .+...++...+.+|..+...... -...++.++..+.+. ++.........|..+.
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 333322 3344444332 34567888888888887765321 134566677766542 2222333333444333
Q ss_pred hhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 004414 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (755)
Q Consensus 158 EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~ 237 (755)
.. .+..+..+. .. ..+..+.+.+.... .......+.+++.+-.... . ....+
T Consensus 172 ~~-----------~~~~~~~i~----~~--~~i~~L~~ll~~~~-------~~~~~~~a~~~L~~l~~~~---~-~~~~~ 223 (529)
T 1jdh_A 172 YG-----------NQESKLIIL----AS--GGPQALVNIMRTYT-------YEKLLWTTSRVLKVLSVCS---S-NKPAI 223 (529)
T ss_dssp TT-----------CHHHHHHHH----HT--THHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTTST---T-HHHHH
T ss_pred hC-----------CHHHHHHHH----HC--CCHHHHHHHHHhCC-------hHHHHHHHHHHHHHHhcCc---c-cHHHH
Confidence 21 111121111 11 22333444444321 1335555566554433210 0 11224
Q ss_pred cccchHHHHHhhcCCC--CcHHHHHHHHHHHhhcCCC--hhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHH
Q 004414 238 AAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG--LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (755)
Q Consensus 238 ~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e 313 (755)
.....++.+...+.++ +++..++.++..+...... .....++.+.. .+.++|.+.....+..+..++.
T Consensus 224 ~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~--------ll~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 224 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ--------LLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH--------HTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHH--------HHcCCCHHHHHHHHHHHHHHhc
Confidence 4566788888888764 4566777777777664422 12223332221 3345677777777777776654
No 79
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=33.33 E-value=2.6e+02 Score=24.92 Aligned_cols=176 Identities=19% Similarity=0.107 Sum_probs=97.6
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHH
Q 004414 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (755)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~ 87 (755)
.....|+.| .++|+..|..|-..|.++. .+++......+|.+. +..+|..|+..|... . +++...
T Consensus 15 ~~~~~i~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~~~------~~~vr~~a~~~L~~~-~------~~~~~~ 79 (201)
T 3ltj_A 15 KVEMYIKNL-QDDSYYVRRAAAYALGKIG-DERAVEPLIKALKDE------DAWVRRAAADALGQI-G------DERAVE 79 (201)
T ss_dssp HHHHHHHHT-TCSCHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCS------SHHHHHHHHHHHHHH-C------CGGGHH
T ss_pred chHHHHHHh-cCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHcCC------CHHHHHHHHHHHHhh-C------CHHHHH
Confidence 345566666 4689999999999999887 456677778888644 358999999998653 1 122332
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhh-cccc--c
Q 004414 88 ALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE-VIDS--Q 164 (755)
Q Consensus 88 ~Lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE-~~~~--~ 164 (755)
.| +..+. .....++...+.+|+.+. -+..++.++..+... ++.......+.|..+... .... .
T Consensus 80 ~L----~~~l~---d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~ 145 (201)
T 3ltj_A 80 PL----IKALK---DEDGWVRQSAAVALGQIG-----DERAVEPLIKALKDE--DWFVRIAAAFALGEIGDERAVEPLIK 145 (201)
T ss_dssp HH----HHHTT---CSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HH----HHHHc---CCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 22 22222 344667777777766542 245666666666432 222333334444433321 0000 0
Q ss_pred ccccCCCHHHHHHHHHHHHh-chhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHH
Q 004414 165 ASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLL 221 (755)
Q Consensus 165 ~~~~~~~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~ 221 (755)
.+. .-....|......+.. ..+.++..|...+.+. ++.++..+.+++.
T Consensus 146 ~l~-d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~--------~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 146 ALK-DEDGWVRQSAADALGEIGGERVRAAMEKLAETG--------TGFARKVAVNYLE 194 (201)
T ss_dssp HTT-CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC--------CHHHHHHHHHHHH
T ss_pred HHc-CCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCC--------CHHHHHHHHHHHH
Confidence 000 0123445555555544 3456666777666542 3457777766654
No 80
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=32.94 E-value=2.3e+02 Score=28.23 Aligned_cols=50 Identities=16% Similarity=0.339 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhccc-hHHHH-HHHHHHHHHHHHHhhhhHhhHHHHHHHHHH
Q 004414 684 FWPMLEKLFRSEHMEN-GNLST-AACRALSLAIQSSGQHFVTLLPQVLDCLST 734 (755)
Q Consensus 684 ~~~~l~~i~~~~~~~~-~~v~e-~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~ 734 (755)
+-|+++.++.. |.++ ++..| .+..++..++..+|..+.|.+|.+++.+-+
T Consensus 71 ippLl~~VL~D-Y~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe 122 (321)
T 1w9c_A 71 VPPLLDAVLID-YQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE 122 (321)
T ss_dssp HHHHHHHHHHH-HHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34677888875 7554 56666 678889999999999999999999888653
No 81
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=30.16 E-value=2.2e+02 Score=30.10 Aligned_cols=182 Identities=13% Similarity=0.077 Sum_probs=89.7
Q ss_pred HHHhHHHHHHHhhHHHHHhCccc---hHHHHHHHHHhccc--CchHHHHHHHHHHHHH----HhhcccCCCchHHHHHHH
Q 004414 504 IVYRSLADVIGSYSKWISAFQTN---ARPLLLFLAAGISE--AVSSNACASALRKICE----DASALIDEPSNLEILMWI 574 (755)
Q Consensus 504 v~~~t~~~~ig~y~~~~~~~p~~---l~~~l~~l~~~l~~--p~v~~~Aa~al~~l~~----~c~~~l~~~~~~~~l~~~ 574 (755)
++..+ +|+|...+.--..+... ..++++.|++-|.. ++++..|+.++++++. +++..+.....++.|..+
T Consensus 216 l~~~A-a~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~l 294 (458)
T 3nmz_A 216 LRRYA-GMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 294 (458)
T ss_dssp HHHHH-HHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHH-HHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHH
Confidence 45555 48888776311112222 24668888887764 5699999999999984 244443222234445443
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCChhHHHHHHHHHHHHH
Q 004414 575 GEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLY 654 (755)
Q Consensus 575 ~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 654 (755)
. ... -+.+.+.....+++.+....+..+ ..... -...+..|-+++....+. .. .+....+...|.
T Consensus 295 L---l~s-~~~~v~~~A~~aL~nLs~~~~~nk--~~I~~--~~Gal~~Lv~LL~~~~~~---~~----~~v~~~A~~aL~ 359 (458)
T 3nmz_A 295 A---LEV-KKESTLKSVLSALWNLSAHCTENK--ADICA--VDGALAFLVGTLTYRSQT---NT----LAIIESGGGILR 359 (458)
T ss_dssp H---TTC-CSHHHHHHHHHHHHHHHHHCHHHH--HHHHH--STTHHHHHHHHTTCCCSS---ST----THHHHHHHHHHH
T ss_pred H---hcC-CCHHHHHHHHHHHHHHccCCHHHH--HHHHH--hcCcHHHHHHHhcCCCCc---ch----HHHHHHHHHHHH
Confidence 2 111 144556677777777765222211 12110 112233333333322110 00 011233444555
Q ss_pred hhhhhcccccccCCCCCCCCchHHHHH-HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 004414 655 RMGTVFSHLPVPLPTNPAGDDPIFALL-RVFWPMLEKLFRSEHMENGNLSTAACRALSLAI 714 (755)
Q Consensus 655 ~L~~~f~~l~~~~~~~~~~~~p~~~~~-~~~~~~l~~i~~~~~~~~~~v~e~~~~~~~~~~ 714 (755)
.|+..+..-. .-...+. ....|.+..++.. ++.++.+.++.++..+.
T Consensus 360 nLs~~~a~~~----------~~~~~i~~~G~i~~Lv~LL~~---~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 360 NVSSLIATNE----------DHRQILRENNCLQTLLQHLKS---HSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHHHHTTCH----------HHHHHHHHTTHHHHHHHHSSC---SCHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCH----------HHHHHHHHcccHHHHHHHHcC---CChHHHHHHHHHHHHHH
Confidence 5543211100 0011222 2345666666642 46788898999988876
No 82
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=29.18 E-value=2.4e+02 Score=30.84 Aligned_cols=119 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHH
Q 004414 457 VETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAA 536 (755)
Q Consensus 457 ~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~ 536 (755)
+|+|-.+|+++ -..+.+ . ..+.+++..+....=. +|..++ --|.=+.+.+.. ++.+++.++.
T Consensus 245 RETaAQtLGaL-~hLp~e---~--~IL~qLV~~l~~~~WE-------VRHGGL-LGLKYL~DLL~~----Ld~Vv~aVL~ 306 (800)
T 3oc3_A 245 RDAAAYLLSRI-YPLIGP---N--DIIEQLVGFLDSGDWQ-------VQFSGL-IALGYLKEFVED----KDGLCRKLVS 306 (800)
T ss_dssp HHHHHHHHHHH-TTTSCS---C--CHHHHHTTGGGCSCHH-------HHHHHH-HHHHHTGGGCCC----HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCChh---H--HHHHHHHhhcCCCCee-------ehhhhH-HHHHHHHHHHHH----HHHHHHHHHh
Q ss_pred hcccCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 004414 537 GISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (755)
Q Consensus 537 ~l~~p~--v~~~Aa~al~~l~~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (755)
||.+++ |+..||.++.-++ ........+..+...+.+..-=..+--.++.-++.+.+
T Consensus 307 GL~D~DDDVRAVAAetLiPIA-------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP-------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYR 365 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC-------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred hcCCcccHHHHHHHHHhhhhc-------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc
No 83
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=28.95 E-value=1.7e+02 Score=30.91 Aligned_cols=142 Identities=12% Similarity=0.072 Sum_probs=72.0
Q ss_pred CChhhhHHHHHHHHhhhhhccccCCcc--chHHHHHHHHHhccCchhh-hhhHHHHHHhHHHHHHHhhHHHHHhCccchH
Q 004414 452 IPWKEVETKLFALNVVSEVVLQEGQAF--DFSVIMQLVAVLSASRSEE-LKGFMHIVYRSLADVIGSYSKWISAFQTNAR 528 (755)
Q Consensus 452 ~~W~~~EA~L~~l~~iae~~~~~~~~~--~l~~i~~ll~~l~~~~~~~-~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~ 528 (755)
.+....|.++-+++.++-......... .-.-+..++..+ .++.+. .. .++..+ +++|...+.++..+++...
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL-~~~~~~~~~---~v~~~A-~~aL~nLs~~~a~~~~~~~ 373 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL-TYRSQTNTL---AIIESG-GGILRNVSSLIATNEDHRQ 373 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHT-TCCCSSSTT---HHHHHH-HHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHh-cCCCCcchH---HHHHHH-HHHHHHHHhcccCCHHHHH
Confidence 457778888888888775332110000 001122233333 222211 00 134444 4788777765555554322
Q ss_pred -----HHHHHHHHhcccC--chHHHHHHHHHHHHHH---hhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 004414 529 -----PLLLFLAAGISEA--VSSNACASALRKICED---ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (755)
Q Consensus 529 -----~~l~~l~~~l~~p--~v~~~Aa~al~~l~~~---c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~v 598 (755)
..++.++.-|.++ +++..|+.++.+++.. ++..+.....++.|..+. ..+ +.+.+.....++..+
T Consensus 374 ~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL---~s~--~~~v~~~Aa~AL~nL 448 (458)
T 3nmz_A 374 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI---HSK--HKMIAMGSAAALRNL 448 (458)
T ss_dssp HHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT---TCS--SHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH---hCC--CHHHHHHHHHHHHHH
Confidence 3566777777654 4899999999999832 222221111122222221 111 445567777777777
Q ss_pred HccCC
Q 004414 599 LGSVS 603 (755)
Q Consensus 599 i~~~p 603 (755)
...-|
T Consensus 449 ~~~~p 453 (458)
T 3nmz_A 449 MANRP 453 (458)
T ss_dssp HTCCS
T ss_pred HcCCH
Confidence 66544
No 84
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=28.38 E-value=6.2e+02 Score=27.70 Aligned_cols=297 Identities=14% Similarity=0.094 Sum_probs=156.3
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChH---------HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccC
Q 004414 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDA---------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY 79 (755)
Q Consensus 9 v~~av~~ly~~~d~~~~~qA~~~L~~fq~s~~---------aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~ 79 (755)
+...+..|.++.++..+..|-..|..+...++ +......+|.+. +..++..|+.+|.+-....
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~v~~~A~~aL~nL~~~~-- 129 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP------VDSVLFYAITTLHNLLLHQ-- 129 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS------SHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC------CHHHHHHHHHHHHHHHhCc--
Confidence 44555556555588889999999998877655 334455666543 3689999999998876642
Q ss_pred CCChHHHHHH-HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHhc------ccCchHHHHHHHhhcccCCCchhHHHHH
Q 004414 80 YLQSAAKDAL-LNALLVAAKRFS-SGPPQLLTQICLALSALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLE 151 (755)
Q Consensus 80 ~l~~~~~~~L-r~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~------~W~~~i~~li~~~~~~~~~~~~~~~lL~ 151 (755)
++.+..+ +...+..|...- .++..++...+.+|..++.... .=...++.++..+.+.. ........+.
T Consensus 130 ---~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~ 205 (644)
T 2z6h_A 130 ---EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSR 205 (644)
T ss_dssp ---TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred ---chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHH
Confidence 2333333 345555554432 3344555555666766664221 01245666777665431 1222344455
Q ss_pred HHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHHHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccc
Q 004414 152 MLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTE 231 (755)
Q Consensus 152 iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~ 231 (755)
+|..+... +..|..+ .. ..++..+...+... +..++..++.++.+-.+..
T Consensus 206 ~L~nLs~~------------~~~~~~l----~~--~g~l~~L~~ll~~~--------~~~~~~~a~~~L~nL~~~~---- 255 (644)
T 2z6h_A 206 VLKVLSVC------------SSNKPAI----VE--AGGMQALGLHLTDP--------SQRLVQNCLWTLRNLSDAA---- 255 (644)
T ss_dssp HHHHHTTC------------TTHHHHH----HH--TTHHHHHHTTTTCS--------CHHHHHHHHHHHHHHGGGC----
T ss_pred HHHHHhcC------------cccHHHH----HH--CCCHHHHHHHHhcC--------CHHHHHHHHHHHHHHhhcc----
Confidence 55554421 1112222 21 12444555555432 3467888888887765532
Q ss_pred cCcchhcccchHHHHHhhcCCC--CcHHHHHHHHHHHhhcCCChhHHHHH-hhh-hhHHHhhhhhhcCCCHHHHhHHHHH
Q 004414 232 ISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLC-RVP-FLKELLLLPALTDGDEKVIGGLACL 307 (755)
Q Consensus 232 ~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eii~~~~~~~~~l~~-~~~-~l~~~~~~~~~~~~d~e~~~~l~~l 307 (755)
+. .......++.+.+.|.++ +++..|+.++..+........+.+.. +.+ .+...+. . .++..+.....++.
T Consensus 256 -~~-~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~--~-~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 256 -TK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL--R-AGDREDITEPAICA 330 (644)
T ss_dssp -TT-CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--H-HTTCHHHHHHHHHH
T ss_pred -hh-hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHH--c-cCCcHHHHHHHHHH
Confidence 11 112346788888888754 56788888888887654322222221 111 1111111 0 11124555556666
Q ss_pred HHHHHHHhh-----HH-HHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHHHHH
Q 004414 308 MSEIGQAAP-----SL-IVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358 (755)
Q Consensus 308 ~~~l~e~~~-----~~-l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~ 358 (755)
+..++.... .. +.. ...++.+..+..++. +.++...++.....+.
T Consensus 331 L~nL~~~~~~~~~~q~~v~~-----~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nLa 381 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRL-----HYGLPVVVKLLHPPS-HWPLIKATVGLIRNLA 381 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHH-----TTHHHHHHHTTSTTC-CHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCchHHHHHHHHHH-----ccChHHHHHHhCccC-chHHHHHHHHHHHHHc
Confidence 655542111 10 111 135677788877752 3467666665544443
No 85
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=27.48 E-value=7.4e+02 Score=28.29 Aligned_cols=270 Identities=12% Similarity=0.061 Sum_probs=137.6
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHH-HHHHHHHHHH-hcCCChHHHHHHHHHHHHH
Q 004414 41 AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDAL-LNALLVAAKR-FSSGPPQLLTQICLALSAL 118 (755)
Q Consensus 41 aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~L-r~~Ll~~l~~-~~~~~~~v~~kL~~~la~l 118 (755)
+-.....+|.+++ +.+|.-|+.+|.+-.. +++.+..+ +...+..|.. ...+...++..-+.+|+.+
T Consensus 496 aVp~LV~LL~s~s------~~vqe~Aa~aL~NLA~------d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL 563 (810)
T 3now_A 496 ITTALCALAKTES------HNSQELIARVLNAVCG------LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI 563 (810)
T ss_dssp HHHHHHHHHTCCC------HHHHHHHHHHHHHHHT------SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCC------HHHHHHHHHHHHHHcC------CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 4556667776543 5888889999877542 22333332 2223333322 1246667788888899988
Q ss_pred HHHhc---ccC-----chHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHHH
Q 004414 119 ILRAV---EHG-----KPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVV 190 (755)
Q Consensus 119 ~~~~~---~W~-----~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v~ 190 (755)
..... .++ +.++-++..+.+.. +.....-.+..|..|.. .++..|..+.+ . ..+
T Consensus 564 ~~~~~p~~~~~~~~~~~aIppLv~LL~~~~-~~l~~~eAl~AL~NLa~-----------~~d~~~~~Ii~----a--G~l 625 (810)
T 3now_A 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDC-TALENFESLMALTNLAS-----------MNESVRQRIIK----E--QGV 625 (810)
T ss_dssp HHHSCHHHHTTTHHHHHTHHHHHHTTSTTS-CHHHHHHHHHHHHHHTT-----------SCHHHHHHHHH----T--THH
T ss_pred hcCCChhhhhcchhhhcHHHHHHHHhCCCC-cHHHHHHHHHHHHHHhc-----------CCHHHHHHHHH----c--CCH
Confidence 76532 232 24566666665311 11111123333433332 11222222222 1 223
Q ss_pred HHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhc-ccchHHHHHhhcCCC--CcHHHHHHHHHHHh
Q 004414 191 EFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA-AHPLLNFVFNSLQVQ--SSFDVAIEVLVELV 267 (755)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~-~~~ll~~~~~~L~~~--~~~~~a~~~l~eii 267 (755)
..|...+.+. ++.++..+++|+.+-.... . ....+. ....++.+...+..+ +++.+|+-++..+.
T Consensus 626 ~~Lv~LL~s~--------~~~Vq~~A~~~L~NLa~~~---~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt 693 (810)
T 3now_A 626 SKIEYYLMED--------HLYLTRAAAQCLCNLVMSE---D-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693 (810)
T ss_dssp HHHHHHHHSC--------CTTHHHHHHHHHHHHTTSH---H-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--------CHHHHHHHHHHHHHHhCCh---H-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 3344444432 3458899999988765411 0 011122 246778888888764 46778888888887
Q ss_pred hcCCChhHHHHHhhhhhHHHhhhhhhcCCCHHHHhHHHHHHHHHHHH---hhHHHHhcChhHHHHHHHHHhcccCCC-CC
Q 004414 268 GRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA---APSLIVEASPEALALADALLSCVAFPS-ED 343 (755)
Q Consensus 268 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~e~~~~l~~l~~~l~e~---~~~~l~~~~~~~~~ll~~ll~~~~~p~-~d 343 (755)
..+....+.++.. .+..+.+. .-+.++|.+..+..+..+..++.. +...+.+. +.++.+..+...++ .+
T Consensus 694 ~~s~~~~~~ii~~-~g~I~~Lv-~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~-----G~i~~L~~LL~~~d~~~ 766 (810)
T 3now_A 694 SVSVKCCEKILAI-ASWLDILH-TLIANPSPAVQHRGIVIILNMINAGEEIAKKLFET-----DIMELLSGLGQLPDDTR 766 (810)
T ss_dssp HHCHHHHHHHHTS-TTHHHHHH-HHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTS-----THHHHHTTSCCCTTSTT
T ss_pred CCCHHHHHHHHHH-cCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC-----CCHHHHHHHHhCcccCc
Confidence 7544334444431 01111111 133456777766666666665432 33334332 34556666654331 13
Q ss_pred cchhhhcHHHHHHHHH
Q 004414 344 WEIADSTLQFWSTLAS 359 (755)
Q Consensus 344 ~~v~~~~~~FW~~l~~ 359 (755)
.++.+.+++-...+.+
T Consensus 767 ~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 767 AKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4566666665554443
No 86
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=26.68 E-value=2.4e+02 Score=30.99 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=42.8
Q ss_pred HHHHHHHHhccc--CchHHHHHHHHHHHHH----HhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 004414 529 PLLLFLAAGISE--AVSSNACASALRKICE----DASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (755)
Q Consensus 529 ~~l~~l~~~l~~--p~v~~~Aa~al~~l~~----~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (755)
..++.|+.-|.. ++++..|+.||++|+. +++..+.....++.|..+... . -+.+.+..+..++..+..
T Consensus 90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s---~-~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK---A-RDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHH---C-CSHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcC---C-CCHHHHHHHHHHHHHHhC
Confidence 456777777765 4599999999999994 455544333356666665542 1 134446666666666644
No 87
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=26.35 E-value=67 Score=32.83 Aligned_cols=93 Identities=4% Similarity=0.002 Sum_probs=59.7
Q ss_pred CCChhhhHHHHHHHHhhhhhccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHH
Q 004414 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPL 530 (755)
Q Consensus 451 ~~~W~~~EA~L~~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~ 530 (755)
+.+-...--+.+.+..+++. + ++. + -+...+..=.+||.+ .+|.-++ +++++.. .|+.++.+
T Consensus 79 s~d~~lKrLvYLyl~~~~~~-~--~e~--i-Lv~Nsl~kDl~~~N~------~iR~lAL-RtL~~I~-----~~~m~~~l 140 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSCI-A--EDV--I-IVTSSLTKDMTGKED------SYRGPAV-RALCQIT-----DSTMLQAI 140 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTTT-S--SCG--G-GGHHHHHHHHHSSCH------HHHHHHH-HHHHHHC-----CTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC-H--HHH--H-HHHHHHHhhcCCCcH------hHHHHHH-HHHhcCC-----CHHHHHHH
Confidence 34555555556666666655 1 111 2 223333332356664 2566554 7888764 68999999
Q ss_pred HHHHHHhccc--CchHHHHHHHHHHHHHHhhcc
Q 004414 531 LLFLAAGISE--AVSSNACASALRKICEDASAL 561 (755)
Q Consensus 531 l~~l~~~l~~--p~v~~~Aa~al~~l~~~c~~~ 561 (755)
.+.+-+++.| |-|+..|+.+..+++...+..
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~ 173 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV 173 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH
Confidence 9999999987 459999999999888665543
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=24.98 E-value=1.9e+02 Score=29.37 Aligned_cols=67 Identities=6% Similarity=-0.049 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCccchHHHHHHHHHhcccCc--hHHHHHHHHHHHHH
Q 004414 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICE 556 (755)
Q Consensus 480 l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~~l~~~l~~l~~~l~~p~--v~~~Aa~al~~l~~ 556 (755)
++.+...+.....|.++ .||.+++ -++. +.+..+|+.....++-+-..+.++. |..+|-.++..+++
T Consensus 137 ~~~l~~~lk~~L~d~~p------yVRk~A~-l~~~---kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVP------SVSSSAL-VSSL---HLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHHHHHHHHHTCSSH------HHHHHHH-HHHH---HHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCH------HHHHHHH-HHHH---HHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 46677777766666654 3777664 3333 4456788877777777767776644 77666666777664
No 89
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=24.12 E-value=1.7e+02 Score=24.25 Aligned_cols=51 Identities=25% Similarity=0.077 Sum_probs=35.5
Q ss_pred HhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHH
Q 004414 15 VLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKR 72 (755)
Q Consensus 15 ~ly~~~d~~~~~qA~~~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ 72 (755)
.+..++|+..|..|-..|-++. .+++......+|.+.+ ..||..|+..|..
T Consensus 49 ~~L~d~~~~vR~~A~~aL~~~~-~~~a~~~L~~~L~d~~------~~VR~~A~~aL~~ 99 (131)
T 1te4_A 49 ESLSNEDWRIRGAAAWIIGNFQ-DERAVEPLIKLLEDDS------GFVRSGAARSLEQ 99 (131)
T ss_dssp HGGGCSCHHHHHHHHHHHGGGC-SHHHHHHHHHHHHHCC------THHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHcCCC------HHHHHHHHHHHHH
Confidence 3344678888888888887776 4667777777775443 4788888777754
No 90
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=22.69 E-value=2.2e+02 Score=29.91 Aligned_cols=117 Identities=12% Similarity=0.019 Sum_probs=63.5
Q ss_pred CChhhhHHHHHHHHhhhhhccccCCcc-chHHHHHHHHHhccCchhhhhhHHHHHHhHHHHHHHhhHHHHHhCcc-chHH
Q 004414 452 IPWKEVETKLFALNVVSEVVLQEGQAF-DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT-NARP 529 (755)
Q Consensus 452 ~~W~~~EA~L~~l~~iae~~~~~~~~~-~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~~~~~~p~-~l~~ 529 (755)
.+-.-.+.+..+|+.++..-++..... ...-+..++..+...+.+ .++..+ +++++..+.. ..+.. .+..
T Consensus 56 ~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~------~~~~~a-~~aL~nLa~~-~~~~~~i~~g 127 (457)
T 1xm9_A 56 PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA------EIQKQL-TGLLWNLSST-DELKEELIAD 127 (457)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH------HHHHHH-HHHHHHHHTS-SSTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH------HHHHHH-HHHHHHHhcC-HHhHHHHHhc
Confidence 345567889999998875311100000 001133344444423333 245555 4888887753 22111 3346
Q ss_pred HHHHHHHhcc------------------cCchHHHHHHHHHHHHHH--hhcccCCC-chHHHHHHHHH
Q 004414 530 LLLFLAAGIS------------------EAVSSNACASALRKICED--ASALIDEP-SNLEILMWIGE 576 (755)
Q Consensus 530 ~l~~l~~~l~------------------~p~v~~~Aa~al~~l~~~--c~~~l~~~-~~~~~l~~~~~ 576 (755)
+++.|+.-+. ++++...|+.++.++|.. ++..+... ..++.|..+..
T Consensus 128 ~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 128 ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHH
T ss_pred cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHH
Confidence 6777777662 223556999999999953 44445432 46676766654
No 91
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=21.54 E-value=5.9e+02 Score=26.12 Aligned_cols=128 Identities=16% Similarity=0.235 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcCCCC---cHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHhh
Q 004414 213 NRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQS---SFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLL 289 (755)
Q Consensus 213 ~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~---~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~ 289 (755)
....|+.+++-+. | + ..|...--..-+..+++.....+. -...-..|++..+++...+...++.+++..=+.
T Consensus 233 IaeLLeilgsIIn-g-f-a~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~-- 307 (392)
T 2jak_A 233 IAELLEILGSIIN-G-F-ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPK-- 307 (392)
T ss_dssp HHHHHHHHHHHHH-T-C-CSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCS--
T ss_pred HHHHHHHHHHHHh-c-c-CCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC--
Confidence 4678888888888 2 1 334432111123333333333322 244566888888888777766666666532111
Q ss_pred hhhhcCCCHHHHhHHHHHHHHHHHHhhHHHHhcChhHHHHHHHHHhcccCCCCCcchhhhcHHHHH
Q 004414 290 LPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWS 355 (755)
Q Consensus 290 ~~~~~~~d~e~~~~l~~l~~~l~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~ 355 (755)
.-.....-+...+-.++-.+...-.. .-...++..+-+|.+-+ ...|++.++-+|.
T Consensus 308 --tns~KevlFL~eleeiLe~~~~~~f~------~i~~~lF~~la~ci~S~--hfqVAErAL~~wn 363 (392)
T 2jak_A 308 --THSPKEVMFLNELEEILDVIEPSEFV------KIMEPLFRQLAKCVSSP--HFQVAERALYYWN 363 (392)
T ss_dssp --SCCTTHHHHHHHHHHHHHTCCHHHHH------HHHHHHHHHHHHHHTCS--SHHHHHHHHGGGG
T ss_pred --CCchHHHHHHHHHHHHHHhCCHHHHH------HHHHHHHHHHHHHHcCC--cHHHHHHHHHHhC
Confidence 00011111111111111111000000 11246777788888876 6899999999996
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=21.29 E-value=5.4e+02 Score=24.51 Aligned_cols=194 Identities=12% Similarity=0.034 Sum_probs=112.5
Q ss_pred HHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHhc-CCChHHHH
Q 004414 31 WLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFS-SGPPQLLT 109 (755)
Q Consensus 31 ~L~~fq~s~~aw~~~~~LL~~~~~~~~~~~~v~ffaa~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~~~~-~~~~~v~~ 109 (755)
...-.|.+++...+..+||...+ ..++.=|.++|.+-++. .|..-....-+.+++.+.... .....|.=
T Consensus 24 a~ela~~~e~~l~~L~~LL~dkD------~~vk~raL~~LeellK~----~~~~l~~~~~e~~Ld~iI~llk~~dEkval 93 (265)
T 3b2a_A 24 AVSLALEDKRALFLILELAGEDD------ETTRLRAFVALGEILKR----ADSDLRMMVLERHLDVFINALSQENEKVTI 93 (265)
T ss_dssp HHHHHHHCHHHHHHHHHHTTSSC------HHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTCCSTTHHHHH
T ss_pred HHHHHHhchhHHHHHHHHHhccc------hHHHHHHHHHHHHHHHh----ccccccHHHHHHHHHHHHHHHhccchhHHH
Confidence 34456778888999999995543 58999999999998886 444444444555555554432 33445555
Q ss_pred HHHHHHHHHHHHhcccCchHHHHHHHhhcccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhchhHH
Q 004414 110 QICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMV 189 (755)
Q Consensus 110 kL~~~la~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~~~~~~r~~~~~~l~~~~~~v 189 (755)
+-.-+|-.+.-.-+--++.+.-+...+.+....++ +++. -+.+|.++.. ++ ..-++.|
T Consensus 94 ~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~--~il~---~eaae~Lgkl-kv----------------~~~~~~V 151 (265)
T 3b2a_A 94 KALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPD--DMMR---IETIDVLSKL-QP----------------LEDSKLV 151 (265)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCC--HHHH---HHHHHHHHHC-CB----------------SCCCHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCC--chHH---HHHHHHhCcC-Cc----------------ccchHHH
Confidence 55555655554444344555555555543221121 1211 1233444311 11 1136788
Q ss_pred HHHHHHhhhcccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchhcccchHHHHHhhcC--CCCcHHHHHHHHHHHh
Q 004414 190 VEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQ--VQSSFDVAIEVLVELV 267 (755)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~--~~~~~~~a~~~l~eii 267 (755)
.+++...+.+ .+..++.++++.+.+-..+. + +.+. ..+++.-+=..|+ |+.+++.|.+.+-+++
T Consensus 152 ~~~l~sLl~S--------kd~~vK~agl~~L~eia~~S---~-D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 152 RTYINELVVS--------PDLYTKVAGFCLFLNMLNSS---A-DSGH--LTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp HHHHHHHHTC--------SSHHHHHHHHHHHHHHGGGC---S-SCCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC--------CChhHHHHHHHHHHHhhccc---C-CHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 8888888843 35678999999888776643 1 1111 1122222223333 4568999999999998
Q ss_pred hcC
Q 004414 268 GRH 270 (755)
Q Consensus 268 ~~~ 270 (755)
+.+
T Consensus 218 s~p 220 (265)
T 3b2a_A 218 SFP 220 (265)
T ss_dssp TSC
T ss_pred cCc
Confidence 865
Done!