Query 004417
Match_columns 754
No_of_seqs 367 out of 2334
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 23:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 4E-140 9E-145 1235.5 73.9 728 3-751 24-758 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 5E-117 1E-121 1042.6 76.1 689 13-750 13-716 (831)
3 COG0308 PepN Aminopeptidase N 100.0 1.1E-87 2.4E-92 792.2 64.6 707 9-749 12-740 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 6.9E-85 1.5E-89 757.7 69.1 702 11-753 4-758 (863)
5 PRK14015 pepN aminopeptidase N 100.0 6E-84 1.3E-88 752.3 70.8 703 10-753 15-768 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 8.6E-78 1.9E-82 681.7 40.6 427 9-465 6-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 1.6E-75 3.4E-80 644.9 36.8 385 9-395 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 5.7E-56 1.2E-60 463.7 27.6 430 11-463 13-460 (613)
9 PF11838 ERAP1_C: ERAP1-like C 100.0 1.8E-37 3.9E-42 333.3 23.4 215 532-751 1-218 (324)
10 KOG1932 TATA binding protein a 100.0 4.7E-36 1E-40 335.7 35.2 428 16-465 27-506 (1180)
11 COG3975 Predicted protease wit 99.3 8.7E-11 1.9E-15 125.0 20.6 300 158-475 115-447 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.2 3.6E-11 7.8E-16 110.1 7.1 106 299-418 23-128 (128)
13 PF10460 Peptidase_M30: Peptid 97.5 0.0049 1.1E-07 65.3 17.8 222 216-455 16-285 (366)
14 PF05299 Peptidase_M61: M61 gl 97.4 0.00011 2.5E-09 65.2 2.7 44 301-344 4-58 (122)
15 PF11940 DUF3458: Domain of un 96.9 0.055 1.2E-06 58.3 18.4 265 468-753 6-304 (367)
16 PF07607 DUF1570: Protein of u 96.0 0.004 8.7E-08 56.0 2.1 38 303-341 3-43 (128)
17 PF04450 BSP: Peptidase of pla 95.6 0.3 6.5E-06 48.1 13.6 171 236-450 26-204 (205)
18 PF10026 DUF2268: Predicted Zn 92.9 0.4 8.7E-06 47.1 8.0 100 239-345 4-113 (195)
19 PF10023 DUF2265: Predicted am 89.8 1.3 2.8E-05 46.6 8.2 114 225-344 40-202 (337)
20 PRK04860 hypothetical protein; 89.1 0.96 2.1E-05 42.6 6.1 70 236-314 5-76 (160)
21 smart00638 LPD_N Lipoprotein N 87.3 13 0.00027 43.4 15.4 179 549-744 356-540 (574)
22 COG4324 Predicted aminopeptida 86.7 0.65 1.4E-05 46.1 3.4 40 299-344 195-234 (376)
23 PF13646 HEAT_2: HEAT repeats; 83.5 4.3 9.3E-05 33.6 6.8 75 659-745 14-88 (88)
24 PF01863 DUF45: Protein of unk 82.7 7.6 0.00016 38.3 9.3 92 235-353 109-200 (205)
25 smart00731 SprT SprT homologue 79.5 2 4.2E-05 40.1 3.5 65 242-315 5-73 (146)
26 PF01347 Vitellogenin_N: Lipop 74.7 39 0.00084 39.7 13.4 181 550-744 395-584 (618)
27 PF01447 Peptidase_M4: Thermol 71.7 7.4 0.00016 36.3 5.1 74 231-312 67-146 (150)
28 PF04234 CopC: CopC domain; I 61.9 36 0.00078 29.1 7.1 63 44-109 17-82 (97)
29 COG4783 Putative Zn-dependent 60.1 9.5 0.00021 41.9 3.8 53 256-313 90-142 (484)
30 PF03272 Enhancin: Viral enhan 60.1 2.6E+02 0.0056 33.8 16.0 129 303-451 238-377 (775)
31 PF14675 FANCI_S1: FANCI solen 59.9 46 0.001 33.3 8.4 119 568-688 4-123 (223)
32 PF12725 DUF3810: Protein of u 59.3 9.4 0.0002 40.6 3.6 32 301-344 196-227 (318)
33 PF01435 Peptidase_M48: Peptid 59.2 6.8 0.00015 39.2 2.5 71 241-320 34-108 (226)
34 PRK04351 hypothetical protein; 58.3 11 0.00024 35.1 3.5 15 298-312 58-72 (149)
35 COG0362 Gnd 6-phosphogluconate 58.1 68 0.0015 34.7 9.5 118 566-704 312-444 (473)
36 PF12315 DUF3633: Protein of u 57.8 16 0.00035 35.6 4.5 41 301-343 93-133 (212)
37 PF10263 SprT-like: SprT-like 56.3 23 0.00049 33.2 5.4 18 298-315 57-74 (157)
38 PF06114 DUF955: Domain of unk 55.3 12 0.00026 32.8 3.2 18 301-318 42-59 (122)
39 PF10989 DUF2808: Protein of u 54.6 36 0.00079 31.6 6.3 47 72-120 75-122 (146)
40 PRK05457 heat shock protein Ht 48.2 31 0.00067 36.0 5.3 68 240-316 79-149 (284)
41 PF13699 DUF4157: Domain of un 45.6 34 0.00074 28.0 4.1 63 243-313 6-73 (79)
42 COG0501 HtpX Zn-dependent prot 45.0 34 0.00073 35.9 5.2 68 244-319 105-175 (302)
43 PRK03982 heat shock protein Ht 44.3 53 0.0011 34.4 6.4 66 240-316 70-140 (288)
44 COG1451 Predicted metal-depend 42.5 49 0.0011 33.2 5.5 93 234-353 119-211 (223)
45 cd04269 ZnMc_adamalysin_II_lik 40.5 91 0.002 30.3 7.1 14 300-313 130-143 (194)
46 PF13574 Reprolysin_2: Metallo 40.0 19 0.0004 34.6 2.0 13 301-313 111-123 (173)
47 PF08325 WLM: WLM domain; Int 39.8 20 0.00043 34.8 2.1 22 296-317 77-98 (186)
48 COG2372 CopC Uncharacterized p 39.1 82 0.0018 28.3 5.6 60 47-109 47-110 (127)
49 PHA02456 zinc metallopeptidase 39.0 20 0.00044 30.8 1.8 15 300-314 78-92 (141)
50 PRK03001 M48 family peptidase; 39.0 51 0.0011 34.4 5.2 68 240-316 69-139 (283)
51 COG3227 LasB Zinc metalloprote 38.6 31 0.00067 38.0 3.5 110 228-344 266-381 (507)
52 PRK04897 heat shock protein Ht 38.6 40 0.00087 35.5 4.4 68 240-316 82-152 (298)
53 PRK01345 heat shock protein Ht 38.1 70 0.0015 34.0 6.2 68 240-316 69-139 (317)
54 PRK02391 heat shock protein Ht 36.7 63 0.0014 34.0 5.5 68 240-316 78-148 (296)
55 PRK03072 heat shock protein Ht 35.7 72 0.0016 33.4 5.8 69 239-316 71-142 (288)
56 smart00638 LPD_N Lipoprotein N 33.2 3.2E+02 0.0069 31.7 11.3 81 659-746 340-423 (574)
57 PRK02870 heat shock protein Ht 32.6 86 0.0019 33.6 5.8 64 241-312 118-184 (336)
58 PRK10301 hypothetical protein; 32.1 2.5E+02 0.0054 25.2 7.8 26 84-109 84-109 (124)
59 PF12174 RST: RCD1-SRO-TAF4 (R 31.9 88 0.0019 25.0 4.3 46 396-442 12-57 (70)
60 PF14524 Wzt_C: Wzt C-terminal 30.1 1.4E+02 0.0031 26.7 6.3 25 83-107 83-107 (142)
61 cd04279 ZnMc_MMP_like_1 Zinc-d 30.0 1.9E+02 0.0041 26.9 7.2 37 219-255 2-41 (156)
62 PF08014 DUF1704: Domain of un 29.2 1.9E+02 0.0041 31.2 7.7 85 241-340 116-213 (349)
63 PRK01265 heat shock protein Ht 29.2 1E+02 0.0022 32.8 5.6 66 240-315 85-154 (324)
64 COG3091 SprT Zn-dependent meta 29.1 84 0.0018 29.1 4.2 22 240-261 7-28 (156)
65 PRK15245 type III effector pho 28.8 1.4E+02 0.0031 29.0 5.8 114 148-284 90-215 (241)
66 PF09768 Peptidase_M76: Peptid 28.6 2.2E+02 0.0049 27.2 7.2 26 297-322 67-92 (173)
67 PF01431 Peptidase_M13: Peptid 28.3 45 0.00099 32.8 2.7 32 287-318 22-53 (206)
68 PF15641 Tox-MPTase5: Metallop 27.3 1.1E+02 0.0023 25.3 4.0 18 299-316 62-80 (109)
69 PF13205 Big_5: Bacterial Ig-l 25.3 4.2E+02 0.009 22.4 8.1 26 83-108 59-85 (107)
70 PF13402 M60-like: Peptidase M 25.1 1.4E+02 0.003 31.4 5.9 107 232-346 144-259 (307)
71 KOG2661 Peptidase family M48 [ 24.7 2.2E+02 0.0048 30.0 6.7 20 298-317 272-291 (424)
72 COG2856 Predicted Zn peptidase 24.4 2.5E+02 0.0054 27.9 7.0 39 301-339 72-115 (213)
73 cd04272 ZnMc_salivary_gland_MP 24.4 1.9E+02 0.0041 28.8 6.4 13 301-313 145-157 (220)
74 KOG3607 Meltrins, fertilins an 24.3 1.7E+02 0.0037 34.8 6.7 81 220-312 242-334 (716)
75 PF09836 DUF2063: Uncharacteri 23.8 55 0.0012 27.6 2.0 30 402-431 55-84 (94)
76 PF13688 Reprolysin_5: Metallo 22.6 51 0.0011 32.1 1.8 15 299-313 140-154 (196)
77 KOG2653 6-phosphogluconate deh 21.4 4.4E+02 0.0095 28.3 8.1 117 568-705 319-450 (487)
78 PF04597 Ribophorin_I: Ribopho 21.3 1.2E+03 0.025 26.1 18.5 86 24-109 10-103 (432)
79 PF13606 Ank_3: Ankyrin repeat 21.1 1.2E+02 0.0026 19.4 2.8 20 664-683 4-23 (30)
80 PF13041 PPR_2: PPR repeat fam 20.4 2.2E+02 0.0047 20.4 4.4 34 663-703 7-40 (50)
81 PF08766 DEK_C: DEK C terminal 20.2 1.1E+02 0.0023 22.9 2.7 38 408-445 2-39 (54)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-140 Score=1235.49 Aligned_cols=728 Identities=49% Similarity=0.797 Sum_probs=668.0
Q ss_pred ccCCCCcCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCcEEeEEEEeeccCCCCccccCceEEEe
Q 004417 3 EFKGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELV 82 (754)
Q Consensus 3 ~~~~~~rLp~~v~p~~Y~l~L~~~~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~ 82 (754)
+++.++|||.+++|+||+|.|.+++....|.|++.|.+++.++|+.|+||+.++.|.++.+...................
T Consensus 24 ~~~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 103 (882)
T KOG1046|consen 24 KFPNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKE 103 (882)
T ss_pred cccccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccccccccc
Confidence 34467999999999999999999999999999999999999999999999999999999987642211111111111111
Q ss_pred cCceEEEEEeCCCCCcc-eEEEEEEEEeeeCCCCcceeeeeecc-CCeeeeeeecccCcCCCCceeeccCCCCCceEEEE
Q 004417 83 EADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL-NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKI 160 (754)
Q Consensus 83 ~~~~~l~i~l~~~L~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~-~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~i 160 (754)
.. +.+.+.+++++.+| +|+|+|.|.|.+++++.|||+++|.+ ++..+++++|||||++||++|||||||++||+|.|
T Consensus 104 ~~-~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~I 182 (882)
T KOG1046|consen 104 QE-ETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTI 182 (882)
T ss_pred cc-eEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEE
Confidence 11 78889999999999 89999999999999999999999987 56668999999999999999999999999999999
Q ss_pred EEEecCCCeEeecCcccee-eecCCeEEEEEEcCCCCcccEEEEEEeceeEEEeecCCCeEEEEEEeCCchhhHHHHHHH
Q 004417 161 TLDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNV 239 (754)
Q Consensus 161 ~i~~p~~~~a~Sn~~~~~~-~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~ 239 (754)
+|.||++++|+|||++.++ ..++++++++|++||+||||++||+||+|++.+..+.+|+++++|++|+...+.+++++.
T Consensus 183 tl~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~ 262 (882)
T KOG1046|consen 183 TLVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEV 262 (882)
T ss_pred EEEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHH
Confidence 9999999999999999876 445569999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcC
Q 004417 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (754)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (754)
+.++|++|+++||+|||++|+|+|++|+|..|||||||||+|++..+|+++..++..++++++.+||||+|||||||+||
T Consensus 263 ~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVT 342 (882)
T KOG1046|consen 263 ATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVT 342 (882)
T ss_pred HHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHH-hhhhccccCCCCceEeecCCccccccccccccccchhHH
Q 004417 320 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 398 (754)
Q Consensus 320 ~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kga~v 398 (754)
|+||+|+|||||||+|+++++++..+|+|..+++++.+.. .++..|+..++||+..++.++.++++.||.++|.||++|
T Consensus 343 m~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasv 422 (882)
T KOG1046|consen 343 MKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASV 422 (882)
T ss_pred HhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999887776 579999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCcEEEEEEEeecc
Q 004417 399 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLS 478 (754)
Q Consensus 399 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~~~~~~W~~~~G~P~~~v~~~~~~~~l~Q~rf~~ 478 (754)
+|||+.++|++.|++||+.|+.+|+|+|++++|||++|+...+.+++++|+.|+.|+|||+++|++++++++++|+||..
T Consensus 423 lRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~ 502 (882)
T KOG1046|consen 423 LRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLS 502 (882)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhcc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred CCC--CCCCeeEEEEEEEECcccceeeEEeeccceEEEecccccccccCCCCCCceEEeccCceEEEEEEcCHHHHHHHH
Q 004417 479 SGS--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLG 556 (754)
Q Consensus 479 ~~~--~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~ 556 (754)
... .....|+||+++.+.+.+.....++..++..+.++. .. +||++|.++.|||||+||+++|+.|+
T Consensus 503 ~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w~~l~ 571 (882)
T KOG1046|consen 503 DPDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENWALLI 571 (882)
T ss_pred CCCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHHHHHH
Confidence 764 234599999999887655445577887777777754 23 69999999999999999999999999
Q ss_pred HHHHc-CCCChhhHHHHHHHHHHHHHhccCChHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Q 004417 557 YAIEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFF 635 (754)
Q Consensus 557 ~~l~~-~~i~~~~r~~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 635 (754)
++|.. ..+++.||++||+|+|+|+++|+++++.+|+++.||.+|++|.||..+...|..+.. +.. .+.+..++.|+
T Consensus 572 ~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~~~~~ 648 (882)
T KOG1046|consen 572 EQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LED--TEIYSKFKEFV 648 (882)
T ss_pred HHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-ccc--chHHHHHHHHH
Confidence 99976 689999999999999999999999999999999999999999999999999999988 544 56889999999
Q ss_pred HHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhHhcCCCCCCCChhhhhHHHhhhhhhccc
Q 004417 636 ISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSA 715 (754)
Q Consensus 636 ~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~ 715 (754)
.+++.++++++||.....++ ....+|..++..||..|+++|.+.|..+|+.|++. ++.+|+++|.+|||.+++ +
T Consensus 649 ~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~--~~~ip~~lr~~vy~~~~~---~ 722 (882)
T KOG1046|consen 649 KKLILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG--TNPIPPDLREVVYCTAVQ---F 722 (882)
T ss_pred HHHHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc--CCCCChhhhhhhhhHHHH---h
Confidence 99999999999998754443 77899999999999999999999999999999987 788999999988877654 8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCcccc
Q 004417 716 SDRSGYESLLRVYRETDLSQEKTRILSIEKSFGKVI 751 (754)
Q Consensus 716 g~~~~~~~l~~~y~~~~~~~er~~ll~aL~~s~d~~ 751 (754)
|+++.|+++|++|+++..+.||..+++||+|+++.+
T Consensus 723 g~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~ 758 (882)
T KOG1046|consen 723 GTEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPW 758 (882)
T ss_pred cCHhHHHHHHHHHhccccHHHHHHHHHHhccCccHH
Confidence 899999999999999999999999999999999874
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=5.3e-117 Score=1042.61 Aligned_cols=689 Identities=24% Similarity=0.341 Sum_probs=579.2
Q ss_pred CceeeEEEEEEEecCCCC--eEEEEEEEEEEEECCCCEEEEEecCcEEeEEEEeeccCCCCccccCceEEEecCceEEEE
Q 004417 13 FAVPKRYDIRLTPDLTSC--KFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (754)
Q Consensus 13 ~v~p~~Y~l~L~~~~~~~--~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (754)
.+.+.||+|+|+++.+.. .+.|+++|++++.++++.|.||+.+++|.+|++++. ........+ ..|
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~----------~~~~~~~~~--~~i 80 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI----------LDVAPVYDG--SRI 80 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc----------ccCccccCC--CEE
Confidence 467999999999976544 558999999999888999999999999999998641 111121222 346
Q ss_pred EeCCCCCcceEEEEEEEEeeeCCCCcceeeeeeccCCeeeeeeecccCcCCCCceeeccCCCCCceEEEEEEEecCCCeE
Q 004417 91 EFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVA 170 (754)
Q Consensus 91 ~l~~~L~~g~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~i~i~~p~~~~a 170 (754)
.++. |.+|.++|+|.|.+.+++.+.|+|+..+..+|+ ++++|||||.+||+||||||||++||+|+++|++|++|+|
T Consensus 81 ~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g~--~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v 157 (831)
T TIGR02412 81 PLPG-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDGE--VYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTV 157 (831)
T ss_pred EccC-CCCCceEEEEEEEEEecCCCceEEEEEeCCCCe--EEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceE
Confidence 6666 777889999999999999999999865444453 7889999999999999999999999999999999999999
Q ss_pred eecCccceeeecCCeEEEEEEcCCCCcccEEEEEEeceeEEEeecCCCeEEEEEEeCCchhh--HHHHHHHHHHHHHHHH
Q 004417 171 LSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQ--GKFALNVAVKTLELYK 248 (754)
Q Consensus 171 ~Sn~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~--~~~~l~~~~~~l~~~e 248 (754)
+|||++.+....++.++++|++|||||+|++||++|+|...+. ..+|+++++|++|+..+. ++++++.++++|++|+
T Consensus 158 ~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~-~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e 236 (831)
T TIGR02412 158 ISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD-ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFH 236 (831)
T ss_pred ECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987765556678899999999999999999999998874 457899999999987654 5789999999999999
Q ss_pred HHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcCccccchhHH
Q 004417 249 EYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWL 328 (754)
Q Consensus 249 ~~fg~~yp~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL 328 (754)
++||+|||++|+|+|++|+|..|||||||+|+|++. +++.+. .+...++.++.+|+||+|||||||+|||+||+|+||
T Consensus 237 ~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWL 314 (831)
T TIGR02412 237 RKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWL 314 (831)
T ss_pred HHhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhH
Confidence 999999999999999999999999999999999999 555554 334566788999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhCCcchhHHHHHHHHH-hhhhccccCCCCceEeecCCccccccccccccccchhHHHHHHHHhhC
Q 004417 329 NEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 407 (754)
Q Consensus 329 nEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG 407 (754)
|||||+|++++++++.+|++..|..|..... .++..|+..++||+..++.++.++...|+.++|.||++||+||+..||
T Consensus 315 nEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lG 394 (831)
T TIGR02412 315 NESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVG 394 (831)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHC
Confidence 9999999999999999999988888876544 568889999999999888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC--cEEE-EEEEeeccCCCCCC
Q 004417 408 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE--EKLE-LEQSQFLSSGSPGD 484 (754)
Q Consensus 408 ~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~~~~~~W~~~~G~P~~~v~~~~--~~~~-l~Q~rf~~~~~~~~ 484 (754)
++.|+++||.|+++|+|+|++++|||+++++++|+++++||++|++++|+|+++|++.. +.+. +.|.+ ++ ..
T Consensus 395 ee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~~ 469 (831)
T TIGR02412 395 EEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES---SG--PP 469 (831)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---CC--CC
Confidence 99999999999999999999999999999999999999999999999999999998753 4444 22221 11 12
Q ss_pred CeeEEEEEEEECccccee-----eEEeeccceEEEecccccccccCCCCCCceEEeccCceEEEEEEcCHHHHHHHHHHH
Q 004417 485 GQWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAI 559 (754)
Q Consensus 485 ~~w~iPl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~l 559 (754)
..|.|||++....+.... .+.+...... ++... +.... +||++|.++.|||||+||+++|+.|.++|
T Consensus 470 ~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~--~~v~~N~~~~gyyrv~yd~~~~~~l~~~l 541 (831)
T TIGR02412 470 RPHRIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQLV----GKRAP--ALVLLNDDDLTYAKVRLDPTSFDTVLAAL 541 (831)
T ss_pred CCeeEEEeeeecCCCcceeeeEEEEEEecCcee--ehhhc----CCCCC--CEEEEeCCCcEEEEEECCHHHHHHHHHHh
Confidence 469999998654332111 1333332221 22110 11233 79999999999999999999999999998
Q ss_pred HcCCCChhhHHHHHHHHHHHHHhccCChHHHHHHH-HhcCCCCcHHHHHHHHHHHH-HHHHHHhccChHHHHHHHHHHHH
Q 004417 560 EMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETEYTVLSNLITISY-KIGRIAADARPELLDYLKQFFIS 637 (754)
Q Consensus 560 ~~~~i~~~~r~~li~D~~~l~~~g~~~~~~~l~l~-~~l~~E~~~~~w~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~ 637 (754)
.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|+++.||..++..+. .+..++.. ++.+..++.|+.+
T Consensus 542 ~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ 618 (831)
T TIGR02412 542 SK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAP--IADRPALLAVAAL 618 (831)
T ss_pred hh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 53 33799999999999999999999999999965 89999999999999999999 88888744 5678889999988
Q ss_pred HHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhHhcCCCCCCCChhhhhHHHhhhhhhcccCC
Q 004417 638 LFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASD 717 (754)
Q Consensus 638 l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~ 717 (754)
++.+.... ++++.+.+++. +..++|..|+++|++.++++|+.++++ ..||||+|..|||+++. ++
T Consensus 619 ~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~dlr~~v~~~~~~----~~ 683 (831)
T TIGR02412 619 ACRSLRRA-------MESGPDFQLRW-LRALALTATDPDSLRRLLSLLDGKIKG---LALDPDLRWRIIARLAA----LG 683 (831)
T ss_pred HHHHHHhc-------cCCCccHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCCCC---cccCHhHHHHHHHHHHh----cC
Confidence 88764422 23333334433 555799999999999999999998754 36999999988886553 56
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHcCCccc
Q 004417 718 RSGYESLLRVYRETDLSQEKTRILSIEKSFGKV 750 (754)
Q Consensus 718 ~~~~~~l~~~y~~~~~~~er~~ll~aL~~s~d~ 750 (754)
.++|+.++++|++++++++|..++.||||++|.
T Consensus 684 ~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~ 716 (831)
T TIGR02412 684 FIDADDIAAELERDNTASGEEHAAAARAARPDA 716 (831)
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCH
Confidence 788999999999999999999999999999875
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-87 Score=792.22 Aligned_cols=707 Identities=32% Similarity=0.504 Sum_probs=571.9
Q ss_pred cCCCCcee-eE--EEEEEEecCC--CCeEEEEEEEEEEE--ECCCCEEEEEecCcEEeEEEEeeccCCCCccccCceEEE
Q 004417 9 RLPKFAVP-KR--YDIRLTPDLT--SCKFGGSVAIDVDV--VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL 81 (754)
Q Consensus 9 rLp~~v~p-~~--Y~l~L~~~~~--~~~f~G~v~I~~~~--~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~ 81 (754)
.++..+.| .+ |++.|+++.. +.+|+|+++|++.. ..+...|+||+.+|+|.++++++... .. .+.+
T Consensus 12 ~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~------~~-~~~~ 84 (859)
T COG0308 12 ALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKAL------TA-WYRL 84 (859)
T ss_pred cccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccc------cc-cccc
Confidence 44555566 66 7777765554 58999999999987 33344499999999999999986321 11 2233
Q ss_pred ecCceEEEEEeCCC--C---CcceEEEEEEEEeeeC-CCCcceeeeeeccCCeeeeeeecccCcCCCCceeeccCCCCCc
Q 004417 82 VEADEILVLEFAET--L---PTGMGVLAIGFEGVLN-DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK 155 (754)
Q Consensus 82 ~~~~~~l~i~l~~~--L---~~g~~~l~i~y~g~~~-~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~k 155 (754)
+. +.+.|....+ . .++...+.+.+++... +.+.|+|++.+.. ..+++||||+.+||+||||+|+|+.|
T Consensus 85 ~~--~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~k 158 (859)
T COG0308 85 DG--DALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDVK 158 (859)
T ss_pred cC--ccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCCc
Confidence 33 3333433332 2 2346778888888777 6788999887643 67889999999999999999999999
Q ss_pred eEEEEEEEecCCCeEeecCccceeee-cCCeEEEEEEcCCCCcccEEEEEEeceeEEEeecC---CCeEEEEEEeCCchh
Q 004417 156 ATFKITLDVPSELVALSNMPVIDEKV-DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS---DGIKVRVYCQVGKAN 231 (754)
Q Consensus 156 a~f~i~i~~p~~~~a~Sn~~~~~~~~-~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~---~g~~v~v~~~~~~~~ 231 (754)
|+|+++|+.++++.++|||++..... .+++++++|+.++||||||+|+++|+|...+.... +++++++|++++...
T Consensus 159 atf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~ 238 (859)
T COG0308 159 ATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLD 238 (859)
T ss_pred ceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchh
Confidence 99999999999999999999987643 35689999999999999999999999988875442 479999999998899
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHH
Q 004417 232 QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 311 (754)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH 311 (754)
.++++++.+.++++||+++||+|||+++ ++|++|+|+.|||||||+++|++..+|.++..++....++++.+|+||+||
T Consensus 239 ~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaH 317 (859)
T COG0308 239 RAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAH 317 (859)
T ss_pred hhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999998878777889999999999999
Q ss_pred HHhcCCcCccccchhHHhhhHHHHHHHHHhhhhCC-cchhHHHHHHHHHh-hhhccccCCCCceEeecCCcccccccccc
Q 004417 312 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGLAESHPIEVEVNHTGEIDEIFDA 389 (754)
Q Consensus 312 qWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~~~~~~pi~~~~~~~~~~~~~f~~ 389 (754)
|||||+||++||+++|||||||+|++..+.+.++| .|..|..+...... ++..|+...+||+...+.++.+++..||.
T Consensus 318 qWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~ 397 (859)
T COG0308 318 QWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDA 397 (859)
T ss_pred hcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcch
Confidence 99999999999999999999999999999999999 88888888766554 78889999999999999999999999999
Q ss_pred ccccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCc-E
Q 004417 390 ISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEE-K 468 (754)
Q Consensus 390 i~Y~Kga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~~~~~~W~~~~G~P~~~v~~~~~-~ 468 (754)
++|.||++|+|||+.++|++.|+++|+.|+++|++++++++|||+++++++|+++..+|.+|++|+|+|++.|+..++ .
T Consensus 398 i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~ 477 (859)
T COG0308 398 IVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDF 477 (859)
T ss_pred hhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887 7
Q ss_pred EEEEEEeeccCCCCCCCeeEEEEEEEECcccceeeEEeeccceEEEecccccccccCCCCCCceEEeccCceEEEEEEcC
Q 004417 469 LELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYD 548 (754)
Q Consensus 469 ~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd 548 (754)
++++|+||...+......|.||+.+............+.....++.+.... ..+- .-+++|....++|++.|+
T Consensus 478 ~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~y~ 550 (859)
T COG0308 478 FKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG-----IPPF--PSLKVNDSAPVFYRVDYS 550 (859)
T ss_pred EEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc-----CCcc--ceeeccCCccceEEEecC
Confidence 899999998877344559999999988754422334455555566665421 0111 368899999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHhccCChHHHHHHHHhcCCCCcHHHH-HHHHHH-HHHHHHHHhccChH
Q 004417 549 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVL-SNLITI-SYKIGRIAADARPE 626 (754)
Q Consensus 549 ~~~w~~l~~~l~~~~i~~~~r~~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~~~~~w-~~~~~~-l~~l~~~~~~~~~~ 626 (754)
.+.|..++... ..++..+|+.++.|..++..+|+.+...++..+....++....++ ..++.. +..|.... . .+
T Consensus 551 ~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~--~~ 625 (859)
T COG0308 551 DQSLSKLLQHD--PRLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFA-D--LE 625 (859)
T ss_pred HHHHHHHHhhh--hhhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccch-h--hh
Confidence 99998887763 378899999999999999999999999999877765554444443 333333 22222221 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhHhcCCCCCCCChhhhhHHH
Q 004417 627 LLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAY 706 (754)
Q Consensus 627 ~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy 706 (754)
..+.......+...+.++++....++.. .......+ +.++-..+..+...+..+|..+-.. ...++|++|..+-
T Consensus 626 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 699 (859)
T COG0308 626 --KFIDPDAIDQLRDALVRLGAEAVADDLL-ALYHIGAL-SQSLYEEDASLAALRALRNACLERL--EKQEDPELRSLVV 699 (859)
T ss_pred --hhcCHHHHHHHHHHHHHHHHHhhcchHH-HHHHhhhh-ccccccccHHHHHHHHHHHHHHhhc--ccccChhHHHHHH
Confidence 3555666777777888888765433322 22222222 6677788899999999999888543 3457899998765
Q ss_pred hhhhhhcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCcc
Q 004417 707 VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSIEKSFGK 749 (754)
Q Consensus 707 ~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~ll~aL~~s~d 749 (754)
..+.. +.+..+.+..+.+.|..++....+..+..+.+..+.
T Consensus 700 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (859)
T COG0308 700 KAYAA--AGNMTDALKALLEAYQSPTRAEALRDFADAFGRFPL 740 (859)
T ss_pred HHHHH--hcChHHHHHHHHHhcccCChHHHHHHHHHHhccccc
Confidence 55543 334444789999999999888889999999886543
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=6.9e-85 Score=757.74 Aligned_cols=702 Identities=20% Similarity=0.256 Sum_probs=507.3
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCcEEeEEEEeeccCCCCccccCceEEEecCceEEEE
Q 004417 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (754)
Q Consensus 11 p~~v~p~~Y~l~L~~~~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (754)
|+.+...||+|+|+++++...++|+++|+++..++...|+||+.+|+|.+|++++. .+. ...+..+++.++|
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~------~~~--~~~~~~~~~~L~I 75 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGK------PLA--AGDYQLDDETLTI 75 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCE------ecC--cceEEEcCCEEEE
Confidence 56788999999999999999999999999998777778999999999999998642 111 1235555677888
Q ss_pred EeCCCCCcceEEEEEEEEeee--CCCCcceeeeeeccCCeeeeeeecccCcCCCCceeeccCCCCCceEEEEEEEecCC-
Q 004417 91 EFAETLPTGMGVLAIGFEGVL--NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE- 167 (754)
Q Consensus 91 ~l~~~L~~g~~~l~i~y~g~~--~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~i~i~~p~~- 167 (754)
.. + ++.++|+|.|.+.. ++...|+|++.+ +++|||||.+||++|||||+|++||+|+++|++|++
T Consensus 76 ~~---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~ 143 (863)
T TIGR02414 76 AS---V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKK 143 (863)
T ss_pred ee---C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCc
Confidence 74 2 35789999997644 456789999753 578999999999999999999999999999999986
Q ss_pred C-eEeecCcccee-eecCCeEEEEEEcCCCCcccEEEEEEeceeEEEee----cCCCeEEEEEEeCCchhhHHHHHHHHH
Q 004417 168 L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVAV 241 (754)
Q Consensus 168 ~-~a~Sn~~~~~~-~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~~~ 241 (754)
| +++|||+++.. ...+++++++|+.++|||+||+||+||+|+.++.. ...++++++|++|+..+.++++++.++
T Consensus 144 y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~ 223 (863)
T TIGR02414 144 YPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLK 223 (863)
T ss_pred ceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHH
Confidence 6 56899987755 33577889999999999999999999999988743 234589999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcCcc
Q 004417 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 321 (754)
Q Consensus 242 ~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~ 321 (754)
++|++||++||+|||++|+++|++|+|..||||||||++|++..++.++...+...++.+..+||||+|||||||+||++
T Consensus 224 ~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~ 303 (863)
T TIGR02414 224 KAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCR 303 (863)
T ss_pred HHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeec
Confidence 99999999999999999999999999999999999999999999999988666667778999999999999999999999
Q ss_pred ccchhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHH-hhhhccccCCCCceEeecCCccccccccccccccchhHHHH
Q 004417 322 WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIR 400 (754)
Q Consensus 322 ~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kga~vl~ 400 (754)
||+++|||||||+|++..+.....+............. ..+..|+...+||+.. .+..+++..|+.++|.||++|||
T Consensus 304 ~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vLr 381 (863)
T TIGR02414 304 DWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLRAHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVIR 381 (863)
T ss_pred chhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHHH
Confidence 99999999999999998766555443110000000011 2345577778888854 23456778899999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC----c--EEEEEEE
Q 004417 401 MLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQS 474 (754)
Q Consensus 401 mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~~~~~~W~~~~G~P~~~v~~~~----~--~~~l~Q~ 474 (754)
||+..||++.|+++|+.|+++|++++++++|||+++++++|.++.+|+ +|++|+|+|+|+|++++ + +++++|.
T Consensus 382 ML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~ 460 (863)
T TIGR02414 382 MLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQS 460 (863)
T ss_pred HHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999985 89999999999999863 2 4566665
Q ss_pred eeccCCCCCCCeeEEEEEEEECc--ccc-----------eeeEEeeccceEEEecccccccccCCCCCCceEEeccCceE
Q 004417 475 QFLSSGSPGDGQWIVPITLCCGS--YDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 541 (754)
Q Consensus 475 rf~~~~~~~~~~w~iPl~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~g 541 (754)
+....+......|.|||.+..-+ +.. ...+.++.+++++.++.+. .. ..+-++.+.+.
T Consensus 461 ~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~-------~~--p~~sl~r~fsa 531 (863)
T TIGR02414 461 TPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIA-------EK--PVPSLLRGFSA 531 (863)
T ss_pred CCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCC-------CC--CeeeecCCCCc
Confidence 43222333455899999996532 211 1235677888888887642 11 35778888888
Q ss_pred EEEEEcCH--HHHHHHHHHHHcCCCChhhHHHHHH-H----HHHHHHhcc-CC-hHHHHHHHHhcCCCC--cHHHHHHH-
Q 004417 542 FYRVKYDK--DLAARLGYAIEMKQLSETDRFGILD-D----HFALCMARQ-QT-LTSLLTLMASYSEET--EYTVLSNL- 609 (754)
Q Consensus 542 yyRV~Yd~--~~w~~l~~~l~~~~i~~~~r~~li~-D----~~~l~~~g~-~~-~~~~l~l~~~l~~E~--~~~~w~~~- 609 (754)
+-++.|+. +.+..|...= .+.+..-+-+|-+- . ...-...|. +. -..+++.+..+-.+. |...-..+
T Consensus 532 pv~l~~~~~~~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~a~~l 610 (863)
T TIGR02414 532 PVNLEYPYSDEDLLLLLAHD-SDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLNDPHLDAAFKALLL 610 (863)
T ss_pred eEEEeCCCCHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 88887654 4443333320 12222222222221 1 111011232 11 234555555533222 22221111
Q ss_pred -HHHHHHHHHHHhccChHH--------HHHHHHHHHHHHHHHHHhcCCcc---CCCCCHHHHHHHHHHHHHHHhcCCHHH
Q 004417 610 -ITISYKIGRIAADARPEL--------LDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGHKET 677 (754)
Q Consensus 610 -~~~l~~l~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~g~~~c 677 (754)
+.....|...+..-+|+. ...+..-++..+..+|+++--.. ...+..-.+.||..+|.++|..+.++.
T Consensus 611 ~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~ 690 (863)
T TIGR02414 611 ALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRLYDALQENGPYSVDPAAAGRRALRNACLSYLSAADDAEI 690 (863)
T ss_pred cCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhH
Confidence 111122222221112222 22333334444555666653211 112234458999999999999999999
Q ss_pred HHHHHHHHHhHhcCCCCCCCChhhhhHHHhhhhhhcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCcccccc
Q 004417 678 LNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSIEKSFGKVIQN 753 (754)
Q Consensus 678 ~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~ll~aL~~s~d~~~~ 753 (754)
.+.|.+.|++--+ ..-|-+.+.+++..-....++..+..+++++.....-+|.-.+.|.+...|..++
T Consensus 691 ~~~~~~~~~~a~~--------mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~ 758 (863)
T TIGR02414 691 RNLALEQFKSADN--------MTDRLAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQATSPRPDTLER 758 (863)
T ss_pred HHHHHHHHHhCCC--------HHHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHhCCCcccHHHH
Confidence 9999999975311 1223333344432111112345777888888888888999999997766665543
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=6e-84 Score=752.31 Aligned_cols=703 Identities=21% Similarity=0.270 Sum_probs=504.4
Q ss_pred CCCCceeeEEEEEEEecCCCCeEEEEEEEEEEE-ECCCCEEEEEecCcEEeEEEEeeccCCCCccccCceEEEecCceEE
Q 004417 10 LPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (754)
Q Consensus 10 Lp~~v~p~~Y~l~L~~~~~~~~f~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (754)
=|..+...||+|+|+++++...++|+++|+... .++.+.|+||+.+|+|.+|.+++. .+.+. .+..+++.|
T Consensus 15 ~~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~------~~~~~--~~~~~~~~L 86 (875)
T PRK14015 15 RPPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQ------PLAPS--AYELDEEGL 86 (875)
T ss_pred CCCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCE------EcCcc--ceEEcCCEE
Confidence 355688899999999999999999999999876 466789999999999999998652 11111 344556788
Q ss_pred EEEeCCCCCcceEEEEEEEEeeeC--CCCcceeeeeeccCCeeeeeeecccCcCCCCceeeccCCCCCceEEEEEEEecC
Q 004417 89 VLEFAETLPTGMGVLAIGFEGVLN--DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPS 166 (754)
Q Consensus 89 ~i~l~~~L~~g~~~l~i~y~g~~~--~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~i~i~~p~ 166 (754)
+|.. + ++.++|+|.|++... ....|+|++.+ +++|||||.+||+||||+|+|++||+|+++|++|+
T Consensus 87 ~I~~---l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~ 154 (875)
T PRK14015 87 TIEN---L-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADK 154 (875)
T ss_pred EEec---C-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEcc
Confidence 8872 3 336899999998654 45679998642 57899999999999999999999999999999999
Q ss_pred -CC-eEeecCccceee-ecCCeEEEEEEcCCCCcccEEEEEEeceeEEEee----cCCCeEEEEEEeCCchhhHHHHHHH
Q 004417 167 -EL-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNV 239 (754)
Q Consensus 167 -~~-~a~Sn~~~~~~~-~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~ 239 (754)
.| +++|||++++.. ..+++++++|+.++|||+||+||++|+|+.++.. ..+++++++|++|+..+.+.++++.
T Consensus 155 ~~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~ 234 (875)
T PRK14015 155 AKYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDS 234 (875)
T ss_pred ccCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHH
Confidence 48 689999988764 4677889999999999999999999999988742 2235999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcC
Q 004417 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (754)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (754)
++++|++||++||.|||++|+++|++|+|..|||||||+++|++..++.++...+...+..+..+||||+|||||||+||
T Consensus 235 ~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT 314 (875)
T PRK14015 235 LKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVT 314 (875)
T ss_pred HHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcce
Confidence 99999999999999999999999999999999999999999999999988876666677788999999999999999999
Q ss_pred ccccchhHHhhhHHHHHHHHHhhhhCCc-chhHHHHHHHHHhhhhccccCCCCceEeecCCccccccccccccccchhHH
Q 004417 320 MEWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 398 (754)
Q Consensus 320 ~~~w~d~WLnEGfA~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kga~v 398 (754)
+.||+++|||||||+|++..+.....+. +.............+..|+...+||+... +..+++..|+.++|.||++|
T Consensus 315 ~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~--~~~~i~~~f~~~~Y~KGA~v 392 (875)
T PRK14015 315 CRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPD--SYIEINNFYTATVYEKGAEV 392 (875)
T ss_pred ecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCc--chhhHHhcccchhhhHHHHH
Confidence 9999999999999999987766554332 11111100000122445666667877532 33466778999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC----c--EEEEE
Q 004417 399 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELE 472 (754)
Q Consensus 399 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~~~~~~W~~~~G~P~~~v~~~~----~--~~~l~ 472 (754)
||||+..||++.|+++|+.|+++|++++++++||++++++++|.++.+|+ +|++|+|+|+++|+++. + +++++
T Consensus 393 LrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~ 471 (875)
T PRK14015 393 IRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLS 471 (875)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999986 89999999999999863 3 45666
Q ss_pred EEeeccCCCCCCCeeEEEEEEEECcc--cc----------eeeEEeeccceEEEecccccccccCCCCCCceEEeccCce
Q 004417 473 QSQFLSSGSPGDGQWIVPITLCCGSY--DV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 540 (754)
Q Consensus 473 Q~rf~~~~~~~~~~w~iPl~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 540 (754)
|.+....++.....|.|||.+...+. .. ...+.++.+++++.++.+. .. ..+.++.+..
T Consensus 472 Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~-------~~--p~~s~~r~fs 542 (875)
T PRK14015 472 QSTPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA-------ER--PVPSLLRGFS 542 (875)
T ss_pred EeCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC-------CC--ceEEecCCCC
Confidence 65443333334458999999965322 11 1236778888889888542 11 3467888888
Q ss_pred EEEEEEcCH--HHHHHHHHHHHcCCCChhhHHHHH-HHHHH-HHHh-cc-CC-hHHHHHHHHhcCCCC--cHHHHHHHH-
Q 004417 541 GFYRVKYDK--DLAARLGYAIEMKQLSETDRFGIL-DDHFA-LCMA-RQ-QT-LTSLLTLMASYSEET--EYTVLSNLI- 610 (754)
Q Consensus 541 gyyRV~Yd~--~~w~~l~~~l~~~~i~~~~r~~li-~D~~~-l~~~-g~-~~-~~~~l~l~~~l~~E~--~~~~w~~~~- 610 (754)
.+-++.|+. +.+..|...= .+.+..-+-+|-+ ..... ++.. |. +. -..+++.++.+-.+. |...-..++
T Consensus 543 apv~~~~~~~~~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~ 621 (875)
T PRK14015 543 APVKLEYDYSDEDLLFLMAHD-SDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFAAELLT 621 (875)
T ss_pred CcEEEeCCCCHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHcc
Confidence 888887764 4333333320 1223222222222 11111 1111 22 11 234555555432222 222222111
Q ss_pred -HHHHHHHHHHhccChHH--------HHHHHHHHHHHHHHHHHhcCCcc---CCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 004417 611 -TISYKIGRIAADARPEL--------LDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGHKETL 678 (754)
Q Consensus 611 -~~l~~l~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~g~~~c~ 678 (754)
.....|...+..-+++. ...+..-++..+..+|+++--.. ...+..-.+.||..++.++|..+.++..
T Consensus 622 lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~ 701 (875)
T PRK14015 622 LPSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEEAA 701 (875)
T ss_pred CCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHH
Confidence 11122222221111222 22223333344445555552111 0123345589999999999999999988
Q ss_pred HHHHHHHHhHhcCCCCCCCChhhhhHHHhhhhhhcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCcccccc
Q 004417 679 NEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSIEKSFGKVIQN 753 (754)
Q Consensus 679 ~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~ll~aL~~s~d~~~~ 753 (754)
+.|.+.|++--+ -.-|-+.+.++...-....++..+..+++++.....-+|.-.+.|.+...|..++
T Consensus 702 ~~~~~~~~~a~~--------mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~ 768 (875)
T PRK14015 702 ELAEAQFDQADN--------MTDRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLER 768 (875)
T ss_pred HHHHHHHhhCCC--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHH
Confidence 889988874311 1123333333332111122445777788888888888999999998777775543
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=8.6e-78 Score=681.74 Aligned_cols=427 Identities=24% Similarity=0.392 Sum_probs=349.7
Q ss_pred cCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECC-CCEEEEEecCcEEeEEEEeeccCCCCccccCceEE----Eec
Q 004417 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGD-TKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVE----LVE 83 (754)
Q Consensus 9 rLp~~v~p~~Y~l~L~~~~~~~~f~G~v~I~~~~~~~-~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~----~~~ 83 (754)
.=|.+++|.||+|+|++|+++.+|+|+|+|++++.++ ++.|+||+.+|+|.+|.+++. ...+. .+.
T Consensus 6 sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~---------~~~~~~~~~~~~ 76 (601)
T TIGR02411 6 SNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGL---------PADFAIGERKEP 76 (601)
T ss_pred cCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCc---------ccceEeccccCC
Confidence 3477899999999999999999999999999999765 588999999999999988642 11222 123
Q ss_pred CceEEEEEeCCCCCcc-eEEEEEEEEeeeCCCCcceeeeeec-cCCeeeeeeecccCcCCCCceeeccCCCCCceEEEEE
Q 004417 84 ADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYE-LNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKIT 161 (754)
Q Consensus 84 ~~~~l~i~l~~~L~~g-~~~l~i~y~g~~~~~~~G~y~~~y~-~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~i~ 161 (754)
.++.|.|.+++++.+| .++|+|.|+|..+ ..|++...+. .+|..+++++|||||++||+||||||+|++||+|+++
T Consensus 77 ~g~~L~I~l~~~l~~g~~~~l~I~Y~~~~~--~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~ 154 (601)
T TIGR02411 77 LGSPLTISLPIATSKNKELVLNISFSTTPK--CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAE 154 (601)
T ss_pred CCCeEEEEeCCccCCCceEEEEEEEeecCC--CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEE
Confidence 5678999999999999 9999999999753 3566544332 3566778889999999999999999999999999999
Q ss_pred EEecCCCeEeecCccceeeecCCeEEEEEEcCCCCcccEEEEEEeceeEEEeecCCCeEEEEEEeCCchhhHHHHHH-HH
Q 004417 162 LDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VA 240 (754)
Q Consensus 162 i~~p~~~~a~Sn~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~ 240 (754)
|++| +.|++||....+.. ++..+++|+.++|||+||+||+||+|+..+ .|.++++|++|+..+.+++++. .+
T Consensus 155 I~~P--~~av~sg~~~~~~~-~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~ 227 (601)
T TIGR02411 155 VESP--LPVLMSGIPDGETS-NDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDT 227 (601)
T ss_pred EeeC--cceeccCCcccccc-CCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHhH
Confidence 9999 88887765544332 345578999999999999999999998654 3678999999998888888888 99
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcC
Q 004417 241 VKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (754)
Q Consensus 241 ~~~l~~~e~~fg~~yp~~k~d~v~~-p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (754)
.++++++|+++| |||++|+|+|++ |+|++||||||| ++|.+..++.+.. ....+||||||||||||+||
T Consensus 228 ~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~--------s~~~viaHElAHqWfGNlVT 297 (601)
T TIGR02411 228 ENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR--------SNVDVIAHELAHSWSGNLVT 297 (601)
T ss_pred HHHHHHHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh--------hhhhhHHHHHHhhccCceee
Confidence 999999999877 999999999987 789999999999 5677776775432 23579999999999999999
Q ss_pred ccccchhHHhhhHHHHHHHHHhhhhCCcchhH-HHHHH--HHHhhhhccccCCCCceEeecCCc--cccccccccccccc
Q 004417 320 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIW-TQFLD--ECTEGLRLDGLAESHPIEVEVNHT--GEIDEIFDAISYRK 394 (754)
Q Consensus 320 ~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~d~~~~~~pi~~~~~~~--~~~~~~f~~i~Y~K 394 (754)
++||+|+|||||||+|++.+++++++|++... ..+.. .....+ +.+...+|+...+.+. .+++..|+.++|.|
T Consensus 298 ~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~K 375 (601)
T TIGR02411 298 NCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEK 375 (601)
T ss_pred cCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCCcccccCCCCChhhhccccchhh
Confidence 99999999999999999999999999986431 11111 111112 2223334444333222 25678899999999
Q ss_pred hhHHHHHHHHhhC-HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcc-----CCCHHHH-HHHhhcCCCcceEEEEEe
Q 004417 395 GASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISVKVK 465 (754)
Q Consensus 395 ga~vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~s-----g~~l~~~-~~~W~~~~G~P~~~v~~~ 465 (754)
|+++|+||+..|| ++.|+++||.|+++|+|++++++||++++.+.. +.+++.+ |++|++++|+|.+.++.+
T Consensus 376 Ga~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 376 GFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 9999999999999 999999999999999999999999999998764 2456666 899999999999876644
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=1.6e-75 Score=644.89 Aligned_cols=385 Identities=46% Similarity=0.823 Sum_probs=342.6
Q ss_pred cCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCcEEeEEEEeeccCCCCccccCceEEEecCceEE
Q 004417 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (754)
Q Consensus 9 rLp~~v~p~~Y~l~L~~~~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (754)
|||++++|.||+|.|+++++..+|+|+++|++++.++++.|+||+.+|+|.++.+.+..... ......+.++.+++.+
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~--~~~~~~~~~~~~~~~l 78 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSS--EYKSSPFEYDDENEKL 78 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSC--TECCEEEEEECCBTEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccc--cccccceeecccccee
Confidence 89999999999999999999999999999999999999999999999999999997543211 1122237788888999
Q ss_pred EEEeCCCCCcc-eEEEEEEEEeeeCCCCcceeeeeecc--CCeeeeeeecccCcCCCCceeeccCCCCCceEEEEEEEec
Q 004417 89 VLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL--NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVP 165 (754)
Q Consensus 89 ~i~l~~~L~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~--~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~i~i~~p 165 (754)
.|.+++++.+| .|+|+|.|+|.++++..|+|++.|.+ ++...++++||+||.+||+||||||+|.+||+|+++|++|
T Consensus 79 ~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p 158 (390)
T PF01433_consen 79 TITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHP 158 (390)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEE
T ss_pred ehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecc
Confidence 99999999999 79999999999999999999999975 6788899999999999999999999999999999999999
Q ss_pred CCCeEeecCccceee-ecCCeEEEEEEcCCCCcccEEEEEEeceeEEEeecCCCeEEEEEEeCCchhhHHHHHHHHHHHH
Q 004417 166 SELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 244 (754)
Q Consensus 166 ~~~~a~Sn~~~~~~~-~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~~~~l 244 (754)
++++|+|||++.+.. ..+++++++|+.++|||+|++||+||+|..++....+|+++++|++|+..+..+++++.+.+++
T Consensus 159 ~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 238 (390)
T PF01433_consen 159 KDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKAL 238 (390)
T ss_dssp TTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHH
T ss_pred ccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHH
Confidence 999999999998874 4468999999999999999999999999998866666799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcCccccc
Q 004417 245 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (754)
Q Consensus 245 ~~~e~~fg~~yp~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (754)
++|+++||+|||++|+|+|++|+|..|||||||+|+|++..++++++.++...+..+..+||||+|||||||+||++||+
T Consensus 239 ~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~ 318 (390)
T PF01433_consen 239 EYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWS 318 (390)
T ss_dssp HHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGG
T ss_pred HHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHH-hhhhccccCCCCceEeecCCccccccccccccccch
Q 004417 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKG 395 (754)
Q Consensus 325 d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg 395 (754)
|+||+||||+|++++++++.+|++.++..+..+.+ .++..|....++|+..++.++.++...|+.++|.||
T Consensus 319 d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 319 DLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 99999999999999999999999888887877665 678999999999999888889999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-56 Score=463.67 Aligned_cols=430 Identities=26% Similarity=0.395 Sum_probs=340.3
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCcEEeEEEEeeccCCCCccccCc-eEEEecCceEEE
Q 004417 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPT-KVELVEADEILV 89 (754)
Q Consensus 11 p~~v~p~~Y~l~L~~~~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 89 (754)
+..+...|++|++++|++...++|+|.+++++..+...|+|+.++|.|.+|++++... ...+. .-.+....+.+.
T Consensus 13 ~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~----~~~i~~~~~~~g~~~~~~ 88 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEP----PFRIGFRQPFLGSGQKLV 88 (613)
T ss_pred hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCC----CCccCcccCCCCCceEEE
Confidence 4556789999999999999999999999999887766799999999999999976421 11111 112223333455
Q ss_pred EEeCCCCCcc-eEEEEEEEEeeeCCCCcceeeeee-ccCCeeeeeeecccCcCCCCceeeccCCCCCceEEEEEEEecCC
Q 004417 90 LEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE 167 (754)
Q Consensus 90 i~l~~~L~~g-~~~l~i~y~g~~~~~~~G~y~~~y-~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~i~i~~p~~ 167 (754)
+..+.+ +.| +.+|.|.|.... +..++-.-.. ...|++..|++||+|..+||.+|||+|.|+.|.||+..|.+|.+
T Consensus 89 l~~~~~-~a~~~~~l~i~y~Ts~--~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~ 165 (613)
T KOG1047|consen 89 LPAPSS-KAGERLQLLIWYETSP--SATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMG 165 (613)
T ss_pred eccccc-cccCceEEEEEEeccC--CcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCc
Confidence 544333 345 899999998643 3345533222 33577889999999999999999999999999999999999999
Q ss_pred CeEeecCccceee-ecCCeEEEEEEcCCCCcccEEEEEEeceeEEEeecCCCeEEEEEEeCCchhhHHHHHH-HHHHHHH
Q 004417 168 LVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAVKTLE 245 (754)
Q Consensus 168 ~~a~Sn~~~~~~~-~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~~~~l~ 245 (754)
+.+++++....+. -..++..++|....|+|+|++||++|+....+ -|.+-+||+.|...+.+++-+. .+.++|+
T Consensus 166 l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~ 241 (613)
T KOG1047|consen 166 LTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFLK 241 (613)
T ss_pred ceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHHH
Confidence 9999888665443 33457889999999999999999999987665 4778999999999888877776 8999999
Q ss_pred HHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcCccccc
Q 004417 246 LYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (754)
Q Consensus 246 ~~e~~fg~~yp~~k~d~v~~-p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (754)
.-|+.+| ||++.+||++++ |+|++||||||.|.+...+ ||-... ....+|||||||.||||+||...|.
T Consensus 242 ~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGNlVTN~sWe 311 (613)
T KOG1047|consen 242 AAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGNLVTNASWE 311 (613)
T ss_pred HHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhcccccccCccc
Confidence 9999999 999999999998 5899999999987777666 555443 3678999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHH-hh--hhccccCCCCceEeecCC--ccccccccccccccchhHHH
Q 004417 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EG--LRLDGLAESHPIEVEVNH--TGEIDEIFDAISYRKGASVI 399 (754)
Q Consensus 325 d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~d~~~~~~pi~~~~~~--~~~~~~~f~~i~Y~Kga~vl 399 (754)
+.||||||++|++..++..++|+... +|-.... .. -.+|.+...++...-+.+ .-+.+..|+.+.|.||..+|
T Consensus 312 hfWLNEGfTvylErrI~g~~~g~~~~--~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll 389 (613)
T KOG1047|consen 312 HFWLNEGFTVYLERRIVGRLYGEAYR--QFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGFALL 389 (613)
T ss_pred hhhhcccchhhhhhhhhhhhcchhHH--HHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhhHHH
Confidence 99999999999999999999997432 2211111 11 123555555555422211 13457789999999999999
Q ss_pred HHHHHhhC-HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCC----CH--HHHHHHhhcCCCcceEEEE
Q 004417 400 RMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PV--NKLMNSWTKQKGYPVISVK 463 (754)
Q Consensus 400 ~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~----~l--~~~~~~W~~~~G~P~~~v~ 463 (754)
+.|++.+| ++.|...||.|+++|+++++.++||.+.+-+.... ++ .--++.|++.+|+|...-.
T Consensus 390 ~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 390 FYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCC
Confidence 99999999 77899999999999999999999999999876532 22 2357999999999975443
No 9
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=1.8e-37 Score=333.33 Aligned_cols=215 Identities=33% Similarity=0.541 Sum_probs=184.1
Q ss_pred eEEeccCceEEEEEEcCHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHhccCChHHHHHHHHhc-CCCCcHHHHHHHH
Q 004417 532 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 610 (754)
Q Consensus 532 wi~~N~~~~gyyRV~Yd~~~w~~l~~~l~~~~i~~~~r~~li~D~~~l~~~g~~~~~~~l~l~~~l-~~E~~~~~w~~~~ 610 (754)
||++|.++.|||||+||+++|..|+++|..+.|++.+|++|++|+|+++++|+++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999987679999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhHhc
Q 004417 611 TISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA 690 (754)
Q Consensus 611 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~ 690 (754)
..|..+.+++...++.....|++|+++++.++++++||+..+++++....+|..|+.+|| |+++|+++|.++|++|++
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhc
Confidence 999999977763334444559999999999999999999988899999999999999999 999999999999999998
Q ss_pred CCCC--CCCChhhhhHHHhhhhhhcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCcccc
Q 004417 691 DRTT--PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSIEKSFGKVI 751 (754)
Q Consensus 691 ~~~~--~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~ll~aL~~s~d~~ 751 (754)
++.. ..||||+|.+|||++ +++|+.++|++++++|+++++++||..++.||||++|..
T Consensus 159 ~~~~~~~~i~~dlr~~v~~~~---~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 159 GNDSPESSIPPDLRWAVYCAG---VRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp TTT-TTSTS-HHHHHHHHHHH---TTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HH
T ss_pred CCcccccccchHHHHHHHHHH---HHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHH
Confidence 6433 379999999777765 458999999999999999999999999999999998763
No 10
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=4.7e-36 Score=335.73 Aligned_cols=428 Identities=20% Similarity=0.271 Sum_probs=315.6
Q ss_pred eeEEEEEEE-ecCCCCeEEEEEEEEEEE-ECCCCEEEEEecCcEEeEEEEeeccCCC--------------Cc-cc----
Q 004417 16 PKRYDIRLT-PDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVS--------------SK-AL---- 74 (754)
Q Consensus 16 p~~Y~l~L~-~~~~~~~f~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~~~~~~~~~--------------~~-~~---- 74 (754)
-.|..+.|. +|+.+.++.|.++|++.. ..+...|+||++++.|.+|.|++..... .+ ..
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 589999998 999999999999999997 4558999999999999999998752110 00 00
Q ss_pred -----cCceEEEecCceEEEEEeCCCCCc-c----eEEEEEEEEeeeCCCCcceeeeeeccCCeeeeeeecccC-cCCCC
Q 004417 75 -----EPTKVELVEADEILVLEFAETLPT-G----MGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFE-PADAR 143 (754)
Q Consensus 75 -----~~~~~~~~~~~~~l~i~l~~~L~~-g----~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~t~~e-p~~Ar 143 (754)
...-...+..++.|.|.++++++. | ..+++|.|+..-|..+--|++..|........+.++..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 001122345568899999988543 2 456779998665555555777665333222334444444 56799
Q ss_pred ceeeccCCCCCceEEEEEEEecCCCeEeecCcccee--eecCCeEEEEEEcCCCCcccEEEEEEeceeEEEeecCCCeEE
Q 004417 144 RCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE--KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKV 221 (754)
Q Consensus 144 ~~fPc~DeP~~ka~f~i~i~~p~~~~a~Sn~~~~~~--~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v 221 (754)
.||||.|.+..+++|++.+++|+.++++|+|.+.+. ..+-+.++++|.-+.|+++..++|+||+|+... ...++++
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~--~P~~~~i 264 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYV--EPSMIDI 264 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccC--CCccCcc
Confidence 999999999999999999999999999999998876 233457899999999999999999999999873 3447899
Q ss_pred EEEEeCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHH
Q 004417 222 RVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRV 301 (754)
Q Consensus 222 ~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~ 301 (754)
..|+.|+.........-...++++|||+++|..|||+.+.+|++|.-..--|....|.+++.+ +||..+..+ .....
T Consensus 265 ~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~iID--q~~~t 341 (1180)
T KOG1932|consen 265 THFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNIID--QTFLT 341 (1180)
T ss_pred eeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhhhh--HHHHH
Confidence 999999998888888889999999999999988999999999999876666777778888777 888876433 33446
Q ss_pred HHHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHHhhhhccccC----CCCceEeec
Q 004417 302 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLA----ESHPIEVEV 377 (754)
Q Consensus 302 ~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~pi~~~~ 377 (754)
...+|-.||.||||-++|+..|+|.||.+|+|.|+..+++++.+|...+..+.-.+.-..+.+|-.. .+.|+....
T Consensus 342 r~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~ 421 (1180)
T KOG1932|consen 342 RRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSM 421 (1180)
T ss_pred HHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcch
Confidence 7889999999999999999999999999999999999999999998665333222211223333211 112332211
Q ss_pred C--------------CccccccccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCC
Q 004417 378 N--------------HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEP 443 (754)
Q Consensus 378 ~--------------~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~ 443 (754)
. .....+..|..-.-.|+..+.+|+++.+|.+-|.+..+..+.. ++...
T Consensus 422 k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~-----------------~~~~~ 484 (1180)
T KOG1932|consen 422 KFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLEL-----------------ASKML 484 (1180)
T ss_pred hhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh-----------------hhhhH
Confidence 1 0111111122222347778888888888888776665555432 22223
Q ss_pred HHHHHHHhhcCCCcceEEEEEe
Q 004417 444 VNKLMNSWTKQKGYPVISVKVK 465 (754)
Q Consensus 444 l~~~~~~W~~~~G~P~~~v~~~ 465 (754)
++.|++.|++..|+|++.+...
T Consensus 485 ~k~~~~~Wv~~~g~~~~r~~~~ 506 (1180)
T KOG1932|consen 485 LKSFFQTWVYGLGVPILRLGQR 506 (1180)
T ss_pred HHHHHHHHHhccCCeeEEEEEE
Confidence 5778888888888888887753
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.34 E-value=8.7e-11 Score=124.98 Aligned_cols=300 Identities=16% Similarity=0.201 Sum_probs=180.4
Q ss_pred EEEEEEecCCCeEeecCccceeeecCCeEEEEEEcCCCCcccEEEEEEeceeEEEeecCCCeEEEEEEeCCc-hhhHHHH
Q 004417 158 FKITLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGK-ANQGKFA 236 (754)
Q Consensus 158 f~i~i~~p~~~~a~Sn~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~-~~~~~~~ 236 (754)
+.+++.-|+ |.+.+..+.+.+... ...-..|+.-.+-| +-+|.|...+-. ..|.+.++-.+... ..+.+..
T Consensus 115 ~~~~~~~p~-wriAT~L~~~~~~~~-~F~aa~~~~lvDSP-----ve~g~~~~~~~e-~~g~ph~~~~~g~~p~~d~~~~ 186 (558)
T COG3975 115 LELTVIPPE-WRIATALPPVATGRF-VFYAASYEELVDSP-----VEAGLFELLDFE-VTGAPHTIALRGELPNFDKERL 186 (558)
T ss_pred eEEEecCcc-ceeeecCCccccCCc-eeecccHHHhcCCh-----hhccccceeeee-ccCCceeEEEeeccccccHHHH
Confidence 556665454 888777665442100 01111122211211 123434433311 22444444333322 3456667
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 004417 237 LNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (754)
Q Consensus 237 l~~~~~~l~~~e~~fg~~yp~~k~d~v~~-p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (754)
.+.++++++.-.+.|| +-|+.++.+++. -+-.+||||+-.-.........+.+ ....+....+++||..|-|-+
T Consensus 187 ~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~~~----~~ky~~~l~llsHEyfH~WNv 261 (558)
T COG3975 187 ASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGFTD----QDKYQDLLGLLSHEYFHAWNV 261 (558)
T ss_pred HHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceeccccccccccccccc----hhHHHHHHHHHHHHHHHhccc
Confidence 7888999999999999 789999888765 5566789998544333333222221 222466789999999999998
Q ss_pred CCcCccc-c----------chhHHhhhHHHHHHHHHhhhh-CCcchhHHHHHH---HHHhhhhccccCCCCceEeecC--
Q 004417 316 NLVTMEW-W----------THLWLNEGFATWVSYLAADSL-FPEWKIWTQFLD---ECTEGLRLDGLAESHPIEVEVN-- 378 (754)
Q Consensus 316 nlVt~~~-w----------~d~WLnEGfA~y~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~d~~~~~~pi~~~~~-- 378 (754)
..+.++- | .-+|+.|||++|+..+..-.. .-+ .++|+. +...++..-..+-.+|+.....
T Consensus 262 KrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~---~~~~l~~la~tl~~~~~~~gRl~~~laEsS~~a 338 (558)
T COG3975 262 KRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLIS---LETYLNYLAKTLARYLNTPGRLRQSLAESSFDA 338 (558)
T ss_pred eeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCc---HHHHHHHHHHHHHHHhcCCceecccccccccch
Confidence 7776642 2 459999999999997755332 111 123332 2222222222222223321111
Q ss_pred -----Cccccccccccc--cccchhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHhccCCCH
Q 004417 379 -----HTGEIDEIFDAI--SYRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAKTEDLWAALEEGSGEPV 444 (754)
Q Consensus 379 -----~~~~~~~~f~~i--~Y~Kga~vl~mL~~~l-----G~~~F~~~l~~yl~~~~~--~~~~~~dl~~~l~~~sg~~l 444 (754)
.++. ..-+.+ .|.||++|--+|...| |+..+...++.+.+.+.. +..+++++..++++++|.++
T Consensus 339 wik~yr~d~--ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~~tg~dl 416 (558)
T COG3975 339 WIKYYRPDE--NSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLENVTGLDL 416 (558)
T ss_pred hHHhhcccc--cccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhccccH
Confidence 1111 111222 3899999998888777 466788888998888766 67799999999999999999
Q ss_pred HHHHHHhhcCCCcceEEEEEeCcEEEEEEEe
Q 004417 445 NKLMNSWTKQKGYPVISVKVKEEKLELEQSQ 475 (754)
Q Consensus 445 ~~~~~~W~~~~G~P~~~v~~~~~~~~l~Q~r 475 (754)
..||+..+++.--|.+.--.....+++++++
T Consensus 417 ~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 417 ATFFDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred HHHHHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 9999999998877665433333455666654
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.18 E-value=3.6e-11 Score=110.05 Aligned_cols=106 Identities=29% Similarity=0.488 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHHhhhhccccCCCCceEeecC
Q 004417 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVN 378 (754)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~ 378 (754)
..+..+++||++|+|+++.+........|++||+|+|++... .. .+.......+..+....-.++.....
T Consensus 23 ~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~----~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (128)
T PF13485_consen 23 DWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRI----ED------EFDEDLKQAIESGSLPPLEPLNSSFD 92 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCc----cc------hhHHHHHHHHHcCCCCChHHHhcccc
Confidence 346689999999999999998777778999999999999331 01 11111122232233222223322111
Q ss_pred CccccccccccccccchhHHHHHHHHhhCHHHHHHHHHHH
Q 004417 379 HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 418 (754)
Q Consensus 379 ~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~~~F~~~l~~y 418 (754)
. ...+....|.+|++++++|....|++.|++.|++|
T Consensus 93 ~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 93 F----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred c----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 33455678999999999999999999999999875
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.53 E-value=0.0049 Score=65.31 Aligned_cols=222 Identities=20% Similarity=0.218 Sum_probs=122.2
Q ss_pred CCCeEEEEEEeCC-----ch--hhHHHHHHHHH---HHHHHHHHHhCCCC-----CCCCcc------EEEe---cCC-CC
Q 004417 216 SDGIKVRVYCQVG-----KA--NQGKFALNVAV---KTLELYKEYFAVPY-----SLPKLD------MIAI---PDF-AA 270 (754)
Q Consensus 216 ~~g~~v~v~~~~~-----~~--~~~~~~l~~~~---~~l~~~e~~fg~~y-----p~~k~d------~v~~---p~~-~~ 270 (754)
.+|..+.+|...+ .. ..++...+.-. ++-+...+.||-|+ ..+|++ +|.+ |+. ..
T Consensus 16 ~~g~~vnvWVed~e~~~~~is~~~~~~l~~~F~~~~~iYp~~~~ifG~pwg~d~d~~~~I~~~~~v~iviln~~~~~~~~ 95 (366)
T PF10460_consen 16 YDGRTVNVWVEDGEYGSNKISDAQADSLAQEFDNSGKIYPRLVEIFGEPWGSDVDGNGKIPTGQPVDIVILNFNPDGSPY 95 (366)
T ss_pred cCCcEEEEEEEcCccCccccCHHHHHHHHHHhccccccchhHHHhcCCCCCCCCCCCCcccCCCceEEEEEecCCCCCce
Confidence 4678888998766 21 12222222222 35566677888653 233443 6655 221 12
Q ss_pred c----------------ccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc--CCcCcc--ccchhHHhh
Q 004417 271 G----------------AMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG--NLVTME--WWTHLWLNE 330 (754)
Q Consensus 271 g----------------amEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG--nlVt~~--~w~d~WLnE 330 (754)
| .-.|.|.++|-....++.... .....+..++|||+-|+=-- +.|... .-.|.||||
T Consensus 96 G~~GYF~s~d~~~~~~~~~SNe~e~~YiD~~~~~~~~~---~~~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE 172 (366)
T PF10460_consen 96 GTAGYFWSSDLYPKSSNPYSNESEYFYIDSETLYLGGN---SGPDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNE 172 (366)
T ss_pred eeeeeecHHHcccccccCCCcceeEEEEecHHhhccCC---ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 2 233445555544433322221 12345789999999997532 233333 236899999
Q ss_pred hHHHHHHHHHhhhhCCcchhHHHHHHHHHhhhhcc-ccCCCCceEeecCCccccccccccccccchhHHHHHHHHhhCHH
Q 004417 331 GFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLD-GLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 409 (754)
Q Consensus 331 GfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~~ 409 (754)
|+|.-+|.++.....+..... .......+..+ .....+.+..- ... . -....|....+++.-|....|.+
T Consensus 173 ~lS~~aEdl~s~~~~~~~n~i---~d~R~~~y~~~~~~~~~~~l~~w-~~~---g--~~l~sYs~s~~Fg~~L~rQ~G~~ 243 (366)
T PF10460_consen 173 MLSMSAEDLYSSKIDPGYNNI---RDSRIPYYNNYTSGNYNCSLTAW-SSF---G--DSLASYSSSYSFGAYLYRQYGGD 243 (366)
T ss_pred HHHHHHHHHHhcCCCcccCcc---ccccHHHHhhccccCCCcceeec-CCC---c--cccccchhHHHHHHHHHHHcChH
Confidence 999999999877764321110 00000111111 11111222111 111 1 12357999999999998888988
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHh-c-cCCCHHHHHHHhhcCC
Q 004417 410 CFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMNSWTKQK 455 (754)
Q Consensus 410 ~F~~~l~~yl~~~~~~~~~~~dl~~~l~~-~-sg~~l~~~~~~W~~~~ 455 (754)
.+++.|.. ....+.++..+++.+ + .+..+.++|.+|...-
T Consensus 244 ~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 244 FYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRRWGVAL 285 (366)
T ss_pred HHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 87666652 233566776666544 4 3568999999998765
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.36 E-value=0.00011 Score=65.18 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhcCCcCc-----------cccchhHHhhhHHHHHHHHHhhhh
Q 004417 301 VATVVAHELAHQWFGNLVTM-----------EWWTHLWLNEGFATWVSYLAADSL 344 (754)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~-----------~~w~d~WLnEGfA~y~~~~~~~~~ 344 (754)
...++|||..|.|-+-.+.| .--+.+|+-|||++|++.+++...
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 45789999999999755544 445679999999999998876543
No 15
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=96.94 E-value=0.055 Score=58.28 Aligned_cols=265 Identities=16% Similarity=0.141 Sum_probs=129.4
Q ss_pred EEEEEEEeeccCCCCCCCeeEEEEEEEECcccc-------eeeEEeeccceEEEecccccccccCCCCCCceEEeccCce
Q 004417 468 KLELEQSQFLSSGSPGDGQWIVPITLCCGSYDV-------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 540 (754)
Q Consensus 468 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 540 (754)
+++++|..-...++.+...|.|||.+..-+..+ ...+.++..++++.+.++. .. -..-++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-------~~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-------EK--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES----------S----EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-------CC--ceeehhcCcc
Confidence 578999877666666677999999986533221 1225678888999998642 22 4678899999
Q ss_pred EEEEEEcCH--HHHHHHHHHHHcCCCChhhHHH--------HHHHHHHHHHhc-cCCh-HHHHHHHHhc-CC-CCcHHHH
Q 004417 541 GFYRVKYDK--DLAARLGYAIEMKQLSETDRFG--------ILDDHFALCMAR-QQTL-TSLLTLMASY-SE-ETEYTVL 606 (754)
Q Consensus 541 gyyRV~Yd~--~~w~~l~~~l~~~~i~~~~r~~--------li~D~~~l~~~g-~~~~-~~~l~l~~~l-~~-E~~~~~w 606 (754)
.+-++.||- +....|... + -+.-+|.. +|.+...-..+| .... ..+++.++.+ .+ +-|...-
T Consensus 77 APV~l~~~~s~~eL~~L~~~---D-~D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~~d~a~~ 152 (367)
T PF11940_consen 77 APVKLEYDYSDEELAFLAAH---D-SDPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDDLDPAFK 152 (367)
T ss_dssp SSSEEE----HHHHHHHHHH-----SSHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SSS-HHHH
T ss_pred cceEecCCCCHHHHHHHHHc---C-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCCCCHHHH
Confidence 999998863 333333332 1 12333321 111111111111 0111 1244433332 11 1222111
Q ss_pred HHH--HHHHHHHHHHHhccChH--------HHHHHHHHHHHHHHHHHHhcCCcc---CCCCCHHHHHHHHHHHHHHHhcC
Q 004417 607 SNL--ITISYKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLG 673 (754)
Q Consensus 607 ~~~--~~~l~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~g 673 (754)
..+ +.....|...+..-+|+ ....+..-+...+..+|+++.-.. ...+..-.+.||..++.+++..+
T Consensus 153 A~~L~LPs~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~~~~~~g~RaLkn~~L~yL~~~~ 232 (367)
T PF11940_consen 153 ALLLTLPSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSPDAEAAGRRALKNLCLSYLAAAD 232 (367)
T ss_dssp HHHTS---HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT-SHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 111 11222222221111122 112222233334445566651111 12233456899999999999999
Q ss_pred CHHHHHHHHHHHHhHhcCCCCCCCChhhhhHHHhhhhhhcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCcccccc
Q 004417 674 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSIEKSFGKVIQN 753 (754)
Q Consensus 674 ~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~ll~aL~~s~d~~~~ 753 (754)
.++..+.|.+.|+.-.+ -.-|-+.+.+++..-....++..+..+++|+.....-+|.-.+.|.+...+..++
T Consensus 233 ~~~~~~la~~qy~~A~n--------MTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~~~l~~ 304 (367)
T PF11940_consen 233 DPEAAELAQEQYKSADN--------MTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSPDTLER 304 (367)
T ss_dssp CTHHHHHHHHHHHHSSS--------HHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--STTHHHH
T ss_pred chHHHHHHHHHHHhCCC--------hhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCccHHHH
Confidence 99999999999986411 1233333344443211223556788888899888888999999998887776554
No 16
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.97 E-value=0.004 Score=56.01 Aligned_cols=38 Identities=32% Similarity=0.502 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCc---CccccchhHHhhhHHHHHHHHHh
Q 004417 303 TVVAHELAHQWFGNLV---TMEWWTHLWLNEGFATWVSYLAA 341 (754)
Q Consensus 303 ~~iaHElaHqWfGnlV---t~~~w~d~WLnEGfA~y~~~~~~ 341 (754)
.+++||-+||=..|.= ....| =.||.||||+|+|..-+
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~-P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADW-PRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCC-chHHHHhHHHHcCCCcc
Confidence 5899999999987641 11222 28999999999996654
No 17
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=95.57 E-value=0.3 Score=48.11 Aligned_cols=171 Identities=19% Similarity=0.257 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCCCCccEEEe--cCCCCcccc----cccceeeecccccccCCCChhHHHHHHHHHHHHH
Q 004417 236 ALNVAVKTLELYKEYFAVP-YSLPKLDMIAI--PDFAAGAME----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHE 308 (754)
Q Consensus 236 ~l~~~~~~l~~~e~~fg~~-yp~~k~d~v~~--p~~~~gamE----n~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHE 308 (754)
+.....+++.+..+.|-.+ .+-+..+.|.+ .++..-|-- +-.-|.++...+--.+. . ...+..+..++.||
T Consensus 26 a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i~~~~~-~-~~~~~Ei~Gvl~HE 103 (205)
T PF04450_consen 26 AEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYIAKYPA-D-GDVRDEIIGVLYHE 103 (205)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHHhhccc-c-cchHHHHHHHHHHH
Confidence 3444556666666666533 22233444332 343211111 11346666553322111 1 22345789999999
Q ss_pred HHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhhCCcchhHHHHHHHHHhhhhccccCCCCceEeecCCccccccccc
Q 004417 309 LAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFD 388 (754)
Q Consensus 309 laHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~ 388 (754)
++|-|=.+--... --||-||+|.|+-..+- ..|. ....|.. ...++
T Consensus 104 ~~H~~Q~~~~~~~---P~~liEGIADyVRl~aG--~~~~--------------------~w~~p~~---------~~~wd 149 (205)
T PF04450_consen 104 MVHCWQWDGRGTA---PGGLIEGIADYVRLKAG--YAPP--------------------HWKRPGG---------GDSWD 149 (205)
T ss_pred HHHHhhcCCCCCC---ChhheecHHHHHHHHcC--CCCc--------------------cccCCCC---------CCCcc
Confidence 9997765543222 24999999999976520 1110 0111110 01233
Q ss_pred cccccchhHHHHHHHH-hhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHH
Q 004417 389 AISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 450 (754)
Q Consensus 389 ~i~Y~Kga~vl~mL~~-~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~~~~~~ 450 (754)
-.|.-.|.+|.-|+. ..|+ .|-+-|..=+++..| +.+++|+. .+|++++++.+.
T Consensus 150 -~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y---~~~~~~~~---l~G~~v~~LW~e 204 (205)
T PF04450_consen 150 -DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKY---SSDDFWKE---LLGKPVDELWAE 204 (205)
T ss_pred -cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCC---CcHhHHHH---HHCcCHHHHHhh
Confidence 478899999999999 6664 355666666655555 45666654 458889888764
No 18
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=92.92 E-value=0.4 Score=47.12 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCccEEEecCCCCc--ccc---cccceeeecccccc-cCCCChhHHHHHHHHHHHHHHHHH
Q 004417 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG--AME---NYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQ 312 (754)
Q Consensus 239 ~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~g--amE---n~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHq 312 (754)
.+.+.+....+.+ |.+.+++.++|.-+.+ -++ ..|-..+...-+++ -+. ......+..++|||+.|.
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~---~~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPN---DYSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCC---cccHHHHHHHHHHHHHHH
Confidence 3445555555554 4557888766532222 111 23333333333333 222 123347889999999998
Q ss_pred HhcCCcCc----cccchhHHhhhHHHHHHHHHhhhhC
Q 004417 313 WFGNLVTM----EWWTHLWLNEGFATWVSYLAADSLF 345 (754)
Q Consensus 313 WfGnlVt~----~~w~d~WLnEGfA~y~~~~~~~~~~ 345 (754)
+--..+.. ..--|.-+.||+|.+++.....+..
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 64433321 1223677899999999977665554
No 19
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=89.77 E-value=1.3 Score=46.59 Aligned_cols=114 Identities=24% Similarity=0.264 Sum_probs=69.3
Q ss_pred EeCCchhhHHHHHHHHHHHHHHHHHHhCCCC------------CCCCccEEEecCCCCccccc----ccceeeecc----
Q 004417 225 CQVGKANQGKFALNVAVKTLELYKEYFAVPY------------SLPKLDMIAIPDFAAGAMEN----YGLVTYRET---- 284 (754)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~y------------p~~k~d~v~~p~~~~gamEn----~gli~~~e~---- 284 (754)
..|...+..+.-|..+.++=+|-++.+|.|= |+--..+++.|.++.-.-.. .|++.|+.-
T Consensus 40 ~dp~~~~~lr~rL~~~~~iR~FA~~~L~Lpdn~sY~~YadL~Rp~vvWnV~Aap~~sl~~~~WcFPi~Gcv~YrGyF~~~ 119 (337)
T PF10023_consen 40 ADPATPPALRARLRLAQQIRRFASEELGLPDNGSYRSYADLDRPYVVWNVFAAPEFSLEPKTWCFPIVGCVPYRGYFDEA 119 (337)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhcCCCcEEEEEEecCcccCCcceeeccccccccccCcCCHH
Confidence 4455556666777888899999888888542 22234566777764322221 345555431
Q ss_pred ---------------------------cccccCCCChh--HHHHHHHHHHHHHHHHHHhcCCcCccccchhHHhhhHHHH
Q 004417 285 ---------------------------ALLYDDQHSAA--ANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATW 335 (754)
Q Consensus 285 ---------------------------~ll~~~~~~~~--~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y 335 (754)
..+-||-.++. .....++.+|-||+|||=+. .+ +|.=+||+||++
T Consensus 120 ~A~~~a~~L~~~GlDv~v~gV~AYSTLGwF~DPlLSt~l~~~~~~LA~LIfHELaHq~~Y----v~--~dt~FNEsfAtf 193 (337)
T PF10023_consen 120 DARAEAAELRAQGLDVYVGGVPAYSTLGWFDDPLLSTMLRYPDGELARLIFHELAHQTLY----VK--GDTAFNESFATF 193 (337)
T ss_pred HHHHHHHHHHHcCCceeEecccccccccccCCcccccccCCCchHHHHHHHHHHhhceee----cC--CCchhhHHHHHH
Confidence 01112222211 12346899999999999442 22 366789999999
Q ss_pred HHHHHhhhh
Q 004417 336 VSYLAADSL 344 (754)
Q Consensus 336 ~~~~~~~~~ 344 (754)
.+...+.+.
T Consensus 194 Ve~~G~~~w 202 (337)
T PF10023_consen 194 VEREGARRW 202 (337)
T ss_pred HHHHHHHHH
Confidence 998877655
No 20
>PRK04860 hypothetical protein; Provisional
Probab=89.06 E-value=0.96 Score=42.61 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc--cccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 004417 236 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME--NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (754)
Q Consensus 236 ~l~~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamE--n~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (754)
+...+...+..-+++||.|++.|+..+-. ....||+- .-+-|.+... ++.+. ....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~--R~rtaG~~~l~~~~I~~Np~--ll~~~-----~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQ--RGTSAGTAWLQSNEIRLNPV--LLLEN-----QQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEee--cchhhcchhHhcCCeeeCHH--HHhhC-----cHHHHHhHHHHHHHHHH
Confidence 44566777888899999888876654322 12224432 2233444433 22221 34567889999999987
Q ss_pred h
Q 004417 314 F 314 (754)
Q Consensus 314 f 314 (754)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 3
No 21
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.34 E-value=13 Score=43.35 Aligned_cols=179 Identities=18% Similarity=0.169 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHH-hccCChHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhccChHH
Q 004417 549 KDLAARLGYAIEMKQLSETDRFGILDDHFALCM-ARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPEL 627 (754)
Q Consensus 549 ~~~w~~l~~~l~~~~i~~~~r~~li~D~~~l~~-~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~ 627 (754)
......|.+.+..+.++..++++++.=+.++++ .-.--.+.+++|++.=.-..+...|.+++-.+..+.+......+..
T Consensus 356 ~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~ 435 (574)
T smart00638 356 PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC 435 (574)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 345566777777788999999999887777763 4444455666666654445567888888888887766543322211
Q ss_pred ----HHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhHhcCCCCCCCChhhhh
Q 004417 628 ----LDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRK 703 (754)
Q Consensus 628 ----~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~ 703 (754)
...+..|+...+....++ ++ ..-+...|..++..|++..+.. +..++.+ ....|+.+|-
T Consensus 436 ~~~~~~~~~~~l~~~l~~~~~~-------~~----~~~~~~~LkaLGN~g~~~~i~~----l~~~l~~--~~~~~~~iR~ 498 (574)
T smart00638 436 PDFVLEELLKYLHELLQQAVSK-------GD----EEEIQLYLKALGNAGHPSSIKV----LEPYLEG--AEPLSTFIRL 498 (574)
T ss_pred ChhhHHHHHHHHHHHHHHHHhc-------CC----chheeeHHHhhhccCChhHHHH----HHHhcCC--CCCCCHHHHH
Confidence 133444444444333221 11 1224567777888888776644 3344432 2346777886
Q ss_pred HHHhhhhhhcccCCHHHHHHHHHHHHcCCCHHH-HHHHHHHH
Q 004417 704 AAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTRILSIE 744 (754)
Q Consensus 704 ~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~e-r~~ll~aL 744 (754)
++..++-+.+..-....-+.++..|.+...+.| |...+.+|
T Consensus 499 ~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 499 AAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 444444333333456677788888887666555 54444333
No 22
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=86.69 E-value=0.65 Score=46.13 Aligned_cols=40 Identities=33% Similarity=0.276 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhh
Q 004417 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (754)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~ 344 (754)
..++.+|-||+|||=|.-- +|.=+||+||+..|...+++.
T Consensus 195 ~~lA~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 195 TYLASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHHH
Confidence 4689999999999976421 356789999999998877664
No 23
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=83.49 E-value=4.3 Score=33.57 Aligned_cols=75 Identities=21% Similarity=0.250 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhHhcCCCCCCCChhhhhHHHhhhhhhcccCCHHHHHHHHHHHHcCCCHHHHH
Q 004417 659 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 738 (754)
Q Consensus 659 ~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~ 738 (754)
...|..++..+|..+.++.+....+++ ++ -.+.+|..+..++.. .|+.+.++.|.+...++.+..-|.
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~~l----~d-----~~~~vr~~a~~aL~~---i~~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIELL----KD-----EDPMVRRAAARALGR---IGDPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHH----TS-----SSHHHHHHHHHHHHC---CHHHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHH----cC-----CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHcCCCcHHHHH
Confidence 578888999999999876665555544 33 247899876655543 577888999999998888777799
Q ss_pred HHHHHHc
Q 004417 739 RILSIEK 745 (754)
Q Consensus 739 ~ll~aL~ 745 (754)
.++.|||
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 9999986
No 24
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=82.66 E-value=7.6 Score=38.31 Aligned_cols=92 Identities=21% Similarity=0.333 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 004417 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (754)
Q Consensus 235 ~~l~~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (754)
.+.+.....+..+++.+|.++ +++.+=-.-. ..|....-|.|+|.-..+.+.+. -+..+|+||+||--.
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~~--------~idYVvvHEL~Hl~~ 177 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLPP--PKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPPE--------VIDYVVVHELCHLRH 177 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ceEEEeehhh-ccccCCCCCcEEeecccccCCcc--------HHHHHHHHHHHHhcc
Confidence 345566677778888888643 3433322222 25655556778887774333332 478899999999876
Q ss_pred cCCcCccccchhHHhhhHHHHHHHHHhhhhCCcchhHHH
Q 004417 315 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (754)
Q Consensus 315 GnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~ 353 (754)
-|- -...| ..++...|+|+....
T Consensus 178 ~nH-----s~~Fw-----------~~v~~~~Pd~k~~~~ 200 (205)
T PF01863_consen 178 PNH-----SKRFW-----------ALVEKYMPDYKERRK 200 (205)
T ss_pred CCC-----CHHHH-----------HHHHHHCcCHHHHHH
Confidence 553 23334 345666788765443
No 25
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=79.52 E-value=2 Score=40.07 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=33.6
Q ss_pred HHHHHHH-HHhCCCCCCCCccEEEecCC--CCccccc-ccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 004417 242 KTLELYK-EYFAVPYSLPKLDMIAIPDF--AAGAMEN-YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (754)
Q Consensus 242 ~~l~~~e-~~fg~~yp~~k~d~v~~p~~--~~gamEn-~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (754)
+.++-++ .+|+-++|-+ .+..-... ..|.-.. .+.|.++.. .........+..+|.|||||.+..
T Consensus 5 ~~~~~~n~~~F~~~l~~~--~i~w~~r~~~~~G~~~~~~~~I~ln~~-------l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHP--KVVWNKRLRKTGGRCLLKSAEIRLNPK-------LLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCC--EEEEehhhhhhhHHhhcCCCEEEeCHH-------HHhhccHHHHHhhHHHHHHHHHHH
Confidence 3444455 8898777765 22222221 1222221 333444433 111112345778999999999974
No 26
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=74.68 E-value=39 Score=39.70 Aligned_cols=181 Identities=17% Similarity=0.099 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHHHH-HhccCChHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhccC----
Q 004417 550 DLAARLGYAIEMKQLSETDRFGILDDHFALC-MARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADAR---- 624 (754)
Q Consensus 550 ~~w~~l~~~l~~~~i~~~~r~~li~D~~~l~-~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~---- 624 (754)
.....|.+.+..+.++....++++--+...+ +.-.--.+.+++|++.-.-..+..++.+++-.+..+.+......
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 3456666667777888887777765544444 22222233333444433334566788888888877766543320
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhHhcCCCCCCCChhh
Q 004417 625 ---PELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDI 701 (754)
Q Consensus 625 ---~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~l 701 (754)
+......++|+..+. +.++-.. .. .+..-+...|..++..|++..+. .+..++.+ ....|..+
T Consensus 475 ~~~~~~~~~~~~~~~~l~----~~l~~~~-~~---~~~~~~~~~LkaLgN~g~~~~i~----~l~~~i~~--~~~~~~~~ 540 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLE----QELKEAV-SR---GDEEEKIVYLKALGNLGHPESIP----VLLPYIEG--KEEVPHFI 540 (618)
T ss_dssp ------SS--GGGTHHHH----HHHHHHH-HT---T-HHHHHHHHHHHHHHT-GGGHH----HHHTTSTT--SS-S-HHH
T ss_pred cccccchhhHHHHHHHHH----HHHHHHh-hc---cCHHHHHHHHHHhhccCCchhhH----HHHhHhhh--ccccchHH
Confidence 111112222222222 2221000 01 12345666777888888876554 44556655 22578888
Q ss_pred hhHHHhhhhhhcccCCHHHHHHHHHHHHcCCCHHH-HHHHHHHH
Q 004417 702 RKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTRILSIE 744 (754)
Q Consensus 702 r~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~e-r~~ll~aL 744 (754)
|-++.-++.+-+..-.+...+.++..|.+.+...| |...+..|
T Consensus 541 R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 541 RVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 87554444432333445778899999998777665 44444333
No 27
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=71.73 E-value=7.4 Score=36.32 Aligned_cols=74 Identities=24% Similarity=0.270 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEEEecCC---CCcccccccceeeecccc-cccCCCChhHHHHHHHHH
Q 004417 231 NQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDF---AAGAMENYGLVTYRETAL-LYDDQHSAAANKQRVATV 304 (754)
Q Consensus 231 ~~~~~~l~~~~~~l~~~e~~fg~~yp~~k--~d~v~~p~~---~~gamEn~gli~~~e~~l-l~~~~~~~~~~~~~~~~~ 304 (754)
..+..|...+.++.+||.+.|| .-++.. ..++..=.+ ...|.-+-..++|..-.- .+.+- ..-..+
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~g~~m~yGdG~~~~f~~~-------~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWNGSQMVYGDGDGQIFKPF-------ASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE-SSSEEEE---SSSBS-G-------GG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCccccCCEEEEECCCCcccccC-------ccccce
Confidence 4455677788999999999999 556653 334432211 122333333344443211 11111 112468
Q ss_pred HHHHHHHH
Q 004417 305 VAHELAHQ 312 (754)
Q Consensus 305 iaHElaHq 312 (754)
+||||+|-
T Consensus 139 vaHEltHG 146 (150)
T PF01447_consen 139 VAHELTHG 146 (150)
T ss_dssp HHHHHHHH
T ss_pred eeeccccc
Confidence 99999995
No 28
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=61.86 E-value=36 Score=29.06 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=33.6
Q ss_pred CCCCEEEEEec-CcE--EeEEEEeeccCCCCccccCceEEEecCceEEEEEeCCCCCcceEEEEEEEEe
Q 004417 44 GDTKFIVLNAA-DLT--INNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEG 109 (754)
Q Consensus 44 ~~~~~i~L~~~-~l~--i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~L~~g~~~l~i~y~g 109 (754)
.+..+|.|... .++ ...+++.+.++ ..+.......+.....+.+.++.+|++|.|+|.-.-.+
T Consensus 17 ~~P~~v~L~F~e~v~~~~s~v~v~~~~g---~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 17 AAPEEVTLTFSEPVEPGFSSVTVTDPDG---KRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVS 82 (97)
T ss_dssp S--SSEEEEESS---CCC-EEEEEEEEE---TTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEE
T ss_pred cCCCEEEEEeCCCCccCccEEEEEcCCC---ceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEe
Confidence 33456777665 244 66777765332 22333334444466799999999999999977654433
No 29
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=60.10 E-value=9.5 Score=41.89 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=33.0
Q ss_pred CCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 004417 256 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (754)
Q Consensus 256 p~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (754)
|-..++++.|.+-...|.-.+|--++--+.++...+ +...++.+||||++|-=
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv~ 142 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHVA 142 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHHh
Confidence 334577888876655666665544443333443322 33468999999999964
No 30
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=60.05 E-value=2.6e+02 Score=33.76 Aligned_cols=129 Identities=15% Similarity=0.216 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCc-CccccchhHHhhhHHHHHHHHHhhhhCC---cchh-H--HHHHHHHHhhhhccccCCCCceEe
Q 004417 303 TVVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLFP---EWKI-W--TQFLDECTEGLRLDGLAESHPIEV 375 (754)
Q Consensus 303 ~~iaHElaHqWfGnlV-t~~~w~d~WLnEGfA~y~~~~~~~~~~~---~~~~-~--~~~~~~~~~~~~~d~~~~~~pi~~ 375 (754)
-.+-|||+|.+=+..+ .-..+.+.| |-=+|.++++..+..... .|-. . ...+...+.+. .+ ...|
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~-i~---~~~~--- 309 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIAL-ID---NNKP--- 309 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHH-Hh---cCCC---
Confidence 4688999999988887 444567888 778888888876552111 1111 0 01111111110 01 1111
Q ss_pred ecCCccccccccccc-cccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCC--HHHHHHHHHhc-cCCCHHHHHHHh
Q 004417 376 EVNHTGEIDEIFDAI-SYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAK--TEDLWAALEEG-SGEPVNKLMNSW 451 (754)
Q Consensus 376 ~~~~~~~~~~~f~~i-~Y~Kga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~--~~dl~~~l~~~-sg~~l~~~~~~W 451 (754)
|+.. .-.|=..+..|+...-|++.|+..=+.|-+. .-.+.. .-.+++.+... ++.|+..+++-|
T Consensus 310 -----------~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 310 -----------FDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred -----------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 2221 1235445555788889999998888777665 222222 22334455555 889999999888
No 31
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=59.94 E-value=46 Score=33.31 Aligned_cols=119 Identities=8% Similarity=0.003 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHhccCChHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhcC
Q 004417 568 DRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLG 647 (754)
Q Consensus 568 ~r~~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg 647 (754)
-|.+++.=...+.+.|.++.+.+.+++..|-.|-+..|=.......+.+.+.++..+. ....+.+.+=+.+..+..+ +
T Consensus 4 kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~-~~~~~ldLlP~~Ls~L~~~-~ 81 (223)
T PF14675_consen 4 KRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDN-KNGKWLDLLPKCLSALSAS-E 81 (223)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS----S-STTTTHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCc-ccchHHHHHHHHHHHHhcC-c
Confidence 4778888888899999999999999999999999998888888777777666653211 1122232222333332222 1
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhH
Q 004417 648 WDSKPGESHLDALLRGEIFTALALLG-HKETLNEASKRFHAF 688 (754)
Q Consensus 648 ~~~~~~~~~~~~~lr~~il~~ac~~g-~~~c~~~A~~~f~~~ 688 (754)
--...++.......+..++.-.|... .+.|+-.-..+|++.
T Consensus 82 ~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~ 123 (223)
T PF14675_consen 82 SINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDV 123 (223)
T ss_dssp --SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS
T ss_pred ccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcC
Confidence 10111222344688888998889887 456666666666543
No 32
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=59.30 E-value=9.4 Score=40.57 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhh
Q 004417 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (754)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~ 344 (754)
.-.++|||+|||= | ...|.=|.|+++++..+-
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~s 227 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACINS 227 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhcC
Confidence 5579999999995 3 348888999999876543
No 33
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=59.15 E-value=6.8 Score=39.15 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCccccccc----ceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 004417 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYG----LVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (754)
Q Consensus 241 ~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamEn~g----li~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (754)
.+.++-+.+..|.+.|.+++-++-.|. ..|.-..+ .|..... ++.. .+...+..++|||++|-.-++
T Consensus 34 ~~~v~~l~~~~~~~~~~~~v~v~~~~~--~NA~~~g~~~~~~I~v~~~-ll~~------~~~~el~aVlaHElgH~~~~h 104 (226)
T PF01435_consen 34 RRIVEELARRAGLGIPPPRVYVIDSPS--PNAFATGGGPRKRIVVTSG-LLES------LSEDELAAVLAHELGHIKHRH 104 (226)
T ss_dssp HHHHHHHHHHHHCTSS--EEEEE--SS--EEEEEETTTC--EEEEEHH-HHHH------SSHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCC--CcEEEEccCCCcEEEEeCh-hhhc------ccHHHHHHHHHHHHHHHHcCC
Confidence 334444444445556655554444443 23322211 2444444 3321 134468899999999999876
Q ss_pred CcCc
Q 004417 317 LVTM 320 (754)
Q Consensus 317 lVt~ 320 (754)
....
T Consensus 105 ~~~~ 108 (226)
T PF01435_consen 105 ILKS 108 (226)
T ss_dssp CCCC
T ss_pred cchH
Confidence 6544
No 34
>PRK04351 hypothetical protein; Provisional
Probab=58.32 E-value=11 Score=35.06 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q 004417 298 KQRVATVVAHELAHQ 312 (754)
Q Consensus 298 ~~~~~~~iaHElaHq 312 (754)
...+..+|+||++|-
T Consensus 58 ~~~l~~vv~HElcH~ 72 (149)
T PRK04351 58 LEELIGIIKHELCHY 72 (149)
T ss_pred HHHHHhhHHHHHHHH
Confidence 456889999999995
No 35
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=58.09 E-value=68 Score=34.73 Aligned_cols=118 Identities=17% Similarity=0.251 Sum_probs=73.4
Q ss_pred hhhHHHHHHHHHHHH-HhccCChHHHHHHHHhcCCCCcH--------HHHHHH----HHHHHHHHHHHhccChHHHH-HH
Q 004417 566 ETDRFGILDDHFALC-MARQQTLTSLLTLMASYSEETEY--------TVLSNL----ITISYKIGRIAADARPELLD-YL 631 (754)
Q Consensus 566 ~~~r~~li~D~~~l~-~~g~~~~~~~l~l~~~l~~E~~~--------~~w~~~----~~~l~~l~~~~~~~~~~~~~-~~ 631 (754)
..+|.++|+|+-.-. .+.-++|..-|.+++.-++|-.+ .+|... ..-|..|...+... |+..+ .+
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~-p~l~nLl~ 390 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDEN-PELANLLL 390 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcC-cchhhhhc
Confidence 679999999996644 45567999999999887766543 345443 12234444444321 22211 11
Q ss_pred HHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhHhcCCCCCCCChhhhhH
Q 004417 632 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRKA 704 (754)
Q Consensus 632 ~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~-~c~~~A~~~f~~~~~~~~~~~i~~~lr~~ 704 (754)
..|+.+++.. ....+|. ++..|...|.+ +|...|...|+.|.+ ..+|.||.++
T Consensus 391 ~pyF~~~~~~---------------~~~~~R~-vV~~a~~~giP~P~~ssalsy~Dsyr~----~~lpaNLiQA 444 (473)
T COG0362 391 APYFKSILEE---------------YQQSLRR-VVAYAVEAGIPVPAFSSALSYYDSYRT----ARLPANLIQA 444 (473)
T ss_pred CHHHHHHHHH---------------HHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHhhh----ccccHHHHHH
Confidence 2222222221 2345665 45567788865 999999999999974 4688998873
No 36
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=57.76 E-value=16 Score=35.65 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhh
Q 004417 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (754)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~ 343 (754)
...++|||+.|-|.- ..-----+.++-||+++-+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 457899999999972 11111225789999999999987664
No 37
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=56.30 E-value=23 Score=33.19 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 004417 298 KQRVATVVAHELAHQWFG 315 (754)
Q Consensus 298 ~~~~~~~iaHElaHqWfG 315 (754)
...+..+|.||++|.|..
T Consensus 57 ~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 57 EEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 456889999999999974
No 38
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=55.34 E-value=12 Score=32.82 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhcCCc
Q 004417 301 VATVVAHELAHQWFGNLV 318 (754)
Q Consensus 301 ~~~~iaHElaHqWfGnlV 318 (754)
-..+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 457999999999998654
No 39
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=54.55 E-value=36 Score=31.58 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=33.4
Q ss_pred ccccCceEEEecCceEEEEEeCCCCCcc-eEEEEEEEEeeeCCCCcceee
Q 004417 72 KALEPTKVELVEADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYR 120 (754)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~i~l~~~L~~g-~~~l~i~y~g~~~~~~~G~y~ 120 (754)
+.+....+..+.++..+.|.+++|++|| .++|.+ .+.-+....|.|.
T Consensus 75 ~~ipl~~v~~~~~~~~i~I~f~~PV~pG~tv~V~l--~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 75 ESIPLAEVEWDEDGRTITITFDEPVPPGTTVTVVL--SPVRNPRSGGTYQ 122 (146)
T ss_pred CccCceEEEEcCCCCEEEEEeCCCCCCCCEEEEEE--EeeeCCCCCCeEE
Confidence 3444567888899999999999999999 555554 4433444556654
No 40
>PRK05457 heat shock protein HtpX; Provisional
Probab=48.24 E-value=31 Score=36.04 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCC---CcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 004417 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (754)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~---~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (754)
..+.++-+.+..|+ |.|++-++-.+... .|.-.+-+.|.+... ++-. -+..++..++|||++|.--|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~~------L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQN------MSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 34556666777775 46777666433221 222222334555443 2211 133568999999999986654
No 41
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=45.59 E-value=34 Score=28.02 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCCCCCCccEEEecCCCC--cccccccceeeecccccccCCC---ChhHHHHHHHHHHHHHHHHHH
Q 004417 243 TLELYKEYFAVPYSLPKLDMIAIPDFAA--GAMENYGLVTYRETALLYDDQH---SAAANKQRVATVVAHELAHQW 313 (754)
Q Consensus 243 ~l~~~e~~fg~~yp~~k~d~v~~p~~~~--gamEn~gli~~~e~~ll~~~~~---~~~~~~~~~~~~iaHElaHqW 313 (754)
+...+|..||.+ +.+..+-.-|.-.. .+|. .--++.... +.+.+.. ++. .-..+++||++|-+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~-A~A~T~G~~-I~f~~g~~~~~s~----~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAASRAAAALG-ARAFTVGND-IYFAPGKYNPDSP----EGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchhhhhhccC-CeEEEECCE-EEEcCCCcCCCCC----CcchhHhHHHHHHH
Confidence 456789999954 66665544332111 1111 112333333 3342221 111 13478999999965
No 42
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=45.04 E-value=34 Score=35.95 Aligned_cols=68 Identities=24% Similarity=0.292 Sum_probs=40.5
Q ss_pred HHHHHHHhCCCCCCCCccEEEecCCCCcccccc---cceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcCCcC
Q 004417 244 LELYKEYFAVPYSLPKLDMIAIPDFAAGAMENY---GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (754)
Q Consensus 244 l~~~e~~fg~~yp~~k~d~v~~p~~~~gamEn~---gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (754)
+.-....-|++ +.+++.++-.|...+-++... |.|...+. ++- . -+..++..+++||++|.=-++.+.
T Consensus 105 v~~~a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll~--~----l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 105 VAELARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTG-LLD--L----LNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHHHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHH-HHh--h----CCHHHHHHHHHHHHHHHhcccHHH
Confidence 33344455533 346666666655444455543 66766665 332 1 133468899999999988776554
No 43
>PRK03982 heat shock protein HtpX; Provisional
Probab=44.26 E-value=53 Score=34.40 Aligned_cols=66 Identities=26% Similarity=0.388 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc-----cccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 004417 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (754)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamE-----n~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (754)
..+.++-+.+..|+| .+++-++ |+-...|+- .-|.|...+. ++- .. +..++..++|||++|-=-
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~g-Ll~-----~l-~~~El~AVlAHElgHi~~ 138 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIV--PTQTPNAFATGRDPKHAVVAVTEG-ILN-----LL-NEDELEGVIAHELTHIKN 138 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEE--eCCCcceEEeccCCCCeEEEeehH-HHh-----hC-CHHHHHHHHHHHHHHHHc
Confidence 455556666667764 4555444 332222222 1234444443 221 11 345689999999999865
Q ss_pred cC
Q 004417 315 GN 316 (754)
Q Consensus 315 Gn 316 (754)
++
T Consensus 139 ~h 140 (288)
T PRK03982 139 RD 140 (288)
T ss_pred CC
Confidence 54
No 44
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=42.45 E-value=49 Score=33.19 Aligned_cols=93 Identities=22% Similarity=0.333 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 004417 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (754)
Q Consensus 234 ~~~l~~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (754)
+.+.+.....+..+.+.+|.++.--++. ..-. ..|.--.-|-|.+... +.. .....+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k~-~WGScs~~~~i~~~~~-l~~-------~p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRAIKLK--NMKR-RWGSCSKAGEIRFNWR-LVM-------APEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceeee--eccc-eeeeecCCCcEEeehh-hhc-------CCHHHHHHHHHHHHHHHh
Confidence 3455667777888899999765532222 1111 1233223333443333 111 123357889999999998
Q ss_pred hcCCcCccccchhHHhhhHHHHHHHHHhhhhCCcchhHHH
Q 004417 314 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (754)
Q Consensus 314 fGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~ 353 (754)
..|- +++ .| ..++.++|++.....
T Consensus 188 e~nH-s~~----Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKNH-SKR----FW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhhc-cHH----HH-----------HHHHHHCCChHHHHH
Confidence 8882 333 33 345667788765443
No 45
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=40.46 E-value=91 Score=30.29 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q 004417 300 RVATVVAHELAHQW 313 (754)
Q Consensus 300 ~~~~~iaHElaHqW 313 (754)
..+.++||||+|+.
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 46789999999996
No 46
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=40.03 E-value=19 Score=34.59 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 004417 301 VATVVAHELAHQW 313 (754)
Q Consensus 301 ~~~~iaHElaHqW 313 (754)
-..++||||+||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999998
No 47
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=39.78 E-value=20 Score=34.84 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 004417 296 ANKQRVATVVAHELAHQWFGNL 317 (754)
Q Consensus 296 ~~~~~~~~~iaHElaHqWfGnl 317 (754)
-....+..++.|||||.++|+-
T Consensus 77 l~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 77 LPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred eeHHHHHHHHHHHHHhcccCCc
Confidence 3455789999999999999884
No 48
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=39.11 E-value=82 Score=28.27 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=35.2
Q ss_pred CEEEEEec---CcEEeEEEEeeccCCCCccccCceEEEecCc-eEEEEEeCCCCCcceEEEEEEEEe
Q 004417 47 KFIVLNAA---DLTINNRSVSFTNKVSSKALEPTKVELVEAD-EILVLEFAETLPTGMGVLAIGFEG 109 (754)
Q Consensus 47 ~~i~L~~~---~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~L~~g~~~l~i~y~g 109 (754)
..|.|+.. +..+..+.+.+.++. .+.......+..+ ..++|.++.+|++|.|++.-...+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~~---~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDGE---EVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCCC---ccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 35566655 233456666553321 1222222333333 459999999999999998876654
No 49
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=39.03 E-value=20 Score=30.76 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHh
Q 004417 300 RVATVVAHELAHQWF 314 (754)
Q Consensus 300 ~~~~~iaHElaHqWf 314 (754)
....+++||++|-|=
T Consensus 78 GC~~TL~HEL~H~WQ 92 (141)
T PHA02456 78 GCRDTLAHELNHAWQ 92 (141)
T ss_pred chHHHHHHHHHHHHh
Confidence 356799999999993
No 50
>PRK03001 M48 family peptidase; Provisional
Probab=38.95 E-value=51 Score=34.44 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecC---CCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 004417 240 AVKTLELYKEYFAVPYSLPKLDMIAIPD---FAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (754)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~---~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (754)
..+.++-+.+..|+|. +++-++-.+. |..|.-.+.+.|...+. ++- . . +..++..++|||++|-=-++
T Consensus 69 L~~~v~~la~~~g~~~--p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll~-~----l-~~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 69 FYRMVRELAQRAGLPM--PKVYLINEDQPNAFATGRNPEHAAVAATTG-ILR-V----L-SEREIRGVMAHELAHVKHRD 139 (283)
T ss_pred HHHHHHHHHHHcCCCC--CeEEEecCCCcceEEecCCCCCeEEEecHH-HHh-h----C-CHHHHHHHHHHHHHHHhCCC
Confidence 4566666677778654 4554332211 11121111233444443 221 1 1 24568999999999976543
No 51
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=38.63 E-value=31 Score=37.96 Aligned_cols=110 Identities=23% Similarity=0.251 Sum_probs=59.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEEEecCCCCcccccccceeeecccccccCCCChhH-HHHHHHHH
Q 004417 228 GKANQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAA-NKQRVATV 304 (754)
Q Consensus 228 ~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~k--~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~-~~~~~~~~ 304 (754)
+....+..|-..+.+..+||.++|| .-.++. +.++..--| | -++.-.......|+|.......- ....-..+
T Consensus 266 ~~~~a~~dAh~~~g~vyD~yk~~fg-r~S~Dn~g~~l~s~vHy--G--~~ynNAfWdG~qMvyGDGDG~~f~~~S~sLDV 340 (507)
T COG3227 266 SSDEAAVDAHYNAGKVYDYYKNTFG-RNSYDNNGMPLVSTVHY--G--KNYNNAFWDGDQMVYGDGDGSFFTPFSGSLDV 340 (507)
T ss_pred cchhhhHHHHhhcchHHHHHHHHhc-ccCcCCCCCceEEEEee--c--cccccccccCceeEeecCCcceecccccccce
Confidence 3334455666788999999999999 334432 333332222 2 12222222233344443321110 01112468
Q ss_pred HHHHHHHHHhc---CCcCccccchhHHhhhHHHHHHHHHhhhh
Q 004417 305 VAHELAHQWFG---NLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (754)
Q Consensus 305 iaHElaHqWfG---nlVt~~~w~d~WLnEGfA~y~~~~~~~~~ 344 (754)
+||||.|.--. +++.-..- -=|||+|+.-+.-++....
T Consensus 341 vAHElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i~~~~ 381 (507)
T COG3227 341 VAHELTHGVTQQTAGLIYRGQS--GALNESFSDVFGTLIEQYV 381 (507)
T ss_pred ehhhhcchhhhhccCceecCCC--CchhhHHHHHHHHHHHHHh
Confidence 99999995544 55544432 2489999999986554433
No 52
>PRK04897 heat shock protein HtpX; Provisional
Probab=38.61 E-value=40 Score=35.52 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCC---CcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 004417 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (754)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~---~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (754)
..+.++-+.+..|+ |.|++-++-.+... .|.-.+-+.|.+... ++- .-+..++..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~------~l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLA------IMNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HHh------hCCHHHHHHHHHHHHHHHhcCC
Confidence 45666667777775 45676655333211 121112234444433 221 1123568899999999965443
No 53
>PRK01345 heat shock protein HtpX; Provisional
Probab=38.13 E-value=70 Score=34.01 Aligned_cols=68 Identities=28% Similarity=0.273 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc---ccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 004417 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (754)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamEn---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (754)
..++++-+.+..|+| .+++-++-.+....-+... -+.|.+... |+-. .+..++..++|||++|.==++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~------L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQR------LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 456667777778865 4565444322211112211 123444433 3321 123468999999999986555
No 54
>PRK02391 heat shock protein HtpX; Provisional
Probab=36.70 E-value=63 Score=33.99 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCC---CcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 004417 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (754)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~---~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (754)
..+.++-+.+..|+| .|++-++-.+... .|.-.+-+.|.+.+. ++-. -+..++..++|||++|--=++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~~------L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LMRR------LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 445566666777765 4566555433221 121112233444333 2211 123468899999999976654
No 55
>PRK03072 heat shock protein HtpX; Provisional
Probab=35.73 E-value=72 Score=33.40 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCccEEEecC---CCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 004417 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPD---FAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (754)
Q Consensus 239 ~~~~~l~~~e~~fg~~yp~~k~d~v~~p~---~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (754)
...+.++-+.+..|+ |.|++-++-.+. |..|....-+.+..... ++ +. -+..++..++|||++|-==|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-IL-QI-----LNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HH-Hh-----CCHHHHHHHHHHHHHHHhcC
Confidence 345666777777886 456765544332 11221111112333322 33 11 13456899999999996544
Q ss_pred C
Q 004417 316 N 316 (754)
Q Consensus 316 n 316 (754)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 4
No 56
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.24 E-value=3.2e+02 Score=31.70 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhHhcCCCCCCCChhhhhHHHhhhhhhcccCCHHHHHHHHHHHHcCCCH---H
Q 004417 659 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLS---Q 735 (754)
Q Consensus 659 ~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~---~ 735 (754)
...|..++......|..+|+....+++.. ..+++.-...++......++.-+.+--+.++++.+..... .
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~-------~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~ 412 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKN-------KKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPY 412 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHH
Confidence 46888889999999999999887766642 2466655555555666666777888888888888765433 3
Q ss_pred HHHHHHHHHcC
Q 004417 736 EKTRILSIEKS 746 (754)
Q Consensus 736 er~~ll~aL~~ 746 (754)
-|..++-|+||
T Consensus 413 l~~sa~l~~~~ 423 (574)
T smart00638 413 LRESALLAYGS 423 (574)
T ss_pred HHHHHHHHHHH
Confidence 34555555553
No 57
>PRK02870 heat shock protein HtpX; Provisional
Probab=32.56 E-value=86 Score=33.57 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCccc---ccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHH
Q 004417 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAM---ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (754)
Q Consensus 241 ~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gam---En~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (754)
.++++-+....|+|+ .+++-++-.+...+-++ ..-+.|...+. ++- . -+..++..++|||++|-
T Consensus 118 ~~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL~-~-----L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 118 YNVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LLE-K-----LDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hhh-h-----CCHHHHHHHHHHHHHHH
Confidence 344555555567543 34554443222112222 12244555444 321 1 13456899999999996
No 58
>PRK10301 hypothetical protein; Provisional
Probab=32.12 E-value=2.5e+02 Score=25.23 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=19.0
Q ss_pred CceEEEEEeCCCCCcceEEEEEEEEe
Q 004417 84 ADEILVLEFAETLPTGMGVLAIGFEG 109 (754)
Q Consensus 84 ~~~~l~i~l~~~L~~g~~~l~i~y~g 109 (754)
....+.+.++.+|++|.|+|+-+-.+
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEe
Confidence 34567888888999999977654443
No 59
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=31.89 E-value=88 Score=25.01 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=39.0
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCC
Q 004417 396 ASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 442 (754)
Q Consensus 396 a~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~ 442 (754)
+.++.+|...++.+.+ .-|..++++++-+-++-++|.+.+....|.
T Consensus 12 ~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 12 PMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 5789999999998885 456777788888889999999999998884
No 60
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=30.09 E-value=1.4e+02 Score=26.74 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=17.1
Q ss_pred cCceEEEEEeCCCCCcceEEEEEEE
Q 004417 83 EADEILVLEFAETLPTGMGVLAIGF 107 (754)
Q Consensus 83 ~~~~~l~i~l~~~L~~g~~~l~i~y 107 (754)
.....+.+.++.+|.+|.|.+.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 4455677788888999999999888
No 61
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=30.02 E-value=1.9e+02 Score=26.86 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=24.5
Q ss_pred eEEEEEEeCCch---hhHHHHHHHHHHHHHHHHHHhCCCC
Q 004417 219 IKVRVYCQVGKA---NQGKFALNVAVKTLELYKEYFAVPY 255 (754)
Q Consensus 219 ~~v~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~fg~~y 255 (754)
.++++|..+... .......+.+.+++..+++..++.+
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~F 41 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLKF 41 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeEE
Confidence 467788877542 2344456778888888888765443
No 62
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=29.24 E-value=1.9e+02 Score=31.21 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCChhHHHHHHHHHHHHHHH-HH-------
Q 004417 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELA-HQ------- 312 (754)
Q Consensus 241 ~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEla-Hq------- 312 (754)
..+-++..+|++ .. --++.+...++..++||-.-+-|.++.+.. .....+..++.||+. |.
T Consensus 116 ~~~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~---------fs~~~l~~L~~HEigvH~lt~~Ng~ 184 (349)
T PF08014_consen 116 SRLQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNAM---------FSERDLEALLHHEIGVHLLTTLNGR 184 (349)
T ss_pred HHHHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCCC---------cCHHHHHHHHHHhhhhhhccccccc
Confidence 334455566666 33 224555556778777776555555555421 134468899999994 42
Q ss_pred -----HhcCCcCccccchhHHhhhHHHHHHHHH
Q 004417 313 -----WFGNLVTMEWWTHLWLNEGFATWVSYLA 340 (754)
Q Consensus 313 -----WfGnlVt~~~w~d~WLnEGfA~y~~~~~ 340 (754)
|++...-+. .=..||+|.+.|++.
T Consensus 185 ~QPl~~l~~Glp~~----~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 185 AQPLKILSLGLPGY----TPTQEGLAVLSEYLS 213 (349)
T ss_pred cCCcHHhCCCCCCC----CCCchHHHHHHHHHh
Confidence 332221111 122699999999764
No 63
>PRK01265 heat shock protein HtpX; Provisional
Probab=29.23 E-value=1e+02 Score=32.82 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCC---Ccc-cccccceeeecccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 004417 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGA-MENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (754)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~---~ga-mEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (754)
..+.++-+.+..|+ |.+++-++-.+... .|- ..+ +-|...+. ++- . -+..++..++|||++|-=-+
T Consensus 85 L~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~-~~Ivvt~g-Ll~-~-----l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 85 LYSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAG-KRIAITLP-LLK-I-----LNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCC-CEEEEehH-HHh-h-----CCHHHHHHHHHHHHHHHHcc
Confidence 34556666677775 45666555333211 111 112 33444333 221 1 13456889999999995433
No 64
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=29.10 E-value=84 Score=29.08 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCcc
Q 004417 240 AVKTLELYKEYFAVPYSLPKLD 261 (754)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~k~d 261 (754)
..+.++-.+..|+-+||.++..
T Consensus 7 L~~~~~~as~~~~r~~~~p~~~ 28 (156)
T COG3091 7 LQQCVEQASLKFFRKFFRPKAS 28 (156)
T ss_pred HHHHHHHHHHHhcCCCCCccee
Confidence 3455555555555588888754
No 65
>PRK15245 type III effector phosphothreonine lyase; Provisional
Probab=28.80 E-value=1.4e+02 Score=28.99 Aligned_cols=114 Identities=18% Similarity=0.296 Sum_probs=65.2
Q ss_pred ccCCCCCceEE---EEEEEe-----cCCCeEeecCccceeeecCCeEEEEEEcCCCCcccEEEEEEeceeEEEeecCCCe
Q 004417 148 CWDEPACKATF---KITLDV-----PSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGI 219 (754)
Q Consensus 148 c~DeP~~ka~f---~i~i~~-----p~~~~a~Sn~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~ 219 (754)
|-++|..|..| .+.|.+ |..+.+++........+-+.|+.+.-+.-+ ......-|.
T Consensus 90 ~R~~~q~kGefaGDK~HiSV~~~qv~qAF~als~lLfSeDSPiDKWKVTDM~rv~----------------qqsRV~~GA 153 (241)
T PRK15245 90 RRESPQSKGDFAGDKFHISVARDQVPQAFQALSGLLFSEDSPVDKWKVTDMERVS----------------QQSRVGLGA 153 (241)
T ss_pred cccCccccccccCceEEEEecHHHHHHHHHHhhhhhcCCCCCcceeeeccccccC----------------ccchhcccc
Confidence 44566555444 444444 455667766555444444445554332211 111223578
Q ss_pred EEEEEEeCCchh--hHHHHHHHHHHHHHHHHHHhCCCCCCCCccEE--EecCCCCcccccccceeeecc
Q 004417 220 KVRVYCQVGKAN--QGKFALNVAVKTLELYKEYFAVPYSLPKLDMI--AIPDFAAGAMENYGLVTYRET 284 (754)
Q Consensus 220 ~v~v~~~~~~~~--~~~~~l~~~~~~l~~~e~~fg~~yp~~k~d~v--~~p~~~~gamEn~gli~~~e~ 284 (754)
.+++|..|+.++ .....+..+.+.++.+|..++.. .++ ..|.- .-.-|||..+.||..
T Consensus 154 QfTLYvKpd~edsqYsa~~l~k~r~Fie~lE~~L~~~------gi~pG~~P~S-DV~pe~W~y~SYRNE 215 (241)
T PRK15245 154 QFTLYVKPDQENSQYSASFLHKTRQFIECLESRLSEN------GVISGQCPES-DVHPENWKYLSYRNE 215 (241)
T ss_pred eEEEEecCccccccCCHHHHHHHHHHHHHHHHHHHHc------CCCCCCCCcc-ccCccccceeeehhh
Confidence 999999998753 23455778889999999887611 110 01221 224589999999976
No 66
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=28.57 E-value=2.2e+02 Score=27.22 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCccc
Q 004417 297 NKQRVATVVAHELAHQWFGNLVTMEW 322 (754)
Q Consensus 297 ~~~~~~~~iaHElaHqWfGnlVt~~~ 322 (754)
.+..+..+++|||.|.|=.-..-++|
T Consensus 67 ~~~~l~~~l~HELIHayD~cr~kvD~ 92 (173)
T PF09768_consen 67 SQGHLEDTLTHELIHAYDHCRAKVDW 92 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 34568899999999998443333343
No 67
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=28.26 E-value=45 Score=32.78 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=19.9
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHHHHhcCCc
Q 004417 287 LYDDQHSAAANKQRVATVVAHELAHQWFGNLV 318 (754)
Q Consensus 287 l~~~~~~~~~~~~~~~~~iaHElaHqWfGnlV 318 (754)
+|++........-.+-.+|||||.|-.-...+
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~ 53 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGI 53 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 44554455555556788999999997754333
No 68
>PF15641 Tox-MPTase5: Metallopeptidase toxin 5
Probab=27.27 E-value=1.1e+02 Score=25.28 Aligned_cols=18 Identities=28% Similarity=0.768 Sum_probs=12.1
Q ss_pred HHHHHHHHHH-HHHHHhcC
Q 004417 299 QRVATVVAHE-LAHQWFGN 316 (754)
Q Consensus 299 ~~~~~~iaHE-laHqWfGn 316 (754)
..+..+|.|| +-|-||--
T Consensus 62 a~lr~~iiheelhhrw~~r 80 (109)
T PF15641_consen 62 AELRNTIIHEELHHRWWKR 80 (109)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456677776 77778754
No 69
>PF13205 Big_5: Bacterial Ig-like domain
Probab=25.27 E-value=4.2e+02 Score=22.36 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.3
Q ss_pred cCceEEEEEeCCCCCcc-eEEEEEEEE
Q 004417 83 EADEILVLEFAETLPTG-MGVLAIGFE 108 (754)
Q Consensus 83 ~~~~~l~i~l~~~L~~g-~~~l~i~y~ 108 (754)
..+..+.|.+.++|.+| .|+|.|.-.
T Consensus 59 ~~~~~~~i~p~~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 59 WDGNTLTITPSQPLKPGTTYTVTIDSG 85 (107)
T ss_pred ccCCEEEEEECCcCCCCCEEEEEECCC
Confidence 56689999999999999 999999554
No 70
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=25.09 E-value=1.4e+02 Score=31.36 Aligned_cols=107 Identities=13% Similarity=0.055 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCC--------CCCccEEEecCCCCcccc-cccceeeecccccccCCCChhHHHHHHH
Q 004417 232 QGKFALNVAVKTLELYKEYFAVPYS--------LPKLDMIAIPDFAAGAME-NYGLVTYRETALLYDDQHSAAANKQRVA 302 (754)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~fg~~yp--------~~k~d~v~~p~~~~gamE-n~gli~~~e~~ll~~~~~~~~~~~~~~~ 302 (754)
+....++...++++...++.|++.+ .++..+|.-.....|.|- ..+-|.+.... .+.-.. ......-.
T Consensus 144 d~~~ll~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~--~~~~l~-~~~~~~~~ 220 (307)
T PF13402_consen 144 DPEELLRFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNW--MNELLN-PNPLRKGG 220 (307)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT----HHHH--HHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcH--HhcccC-HhHcCCCC
Confidence 4566677888899999999998773 223367777777767777 33344444320 000000 00111124
Q ss_pred HHHHHHHHHHHhcCCcCccccchhHHhhhHHHHHHHHHhhhhCC
Q 004417 303 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP 346 (754)
Q Consensus 303 ~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~ 346 (754)
-.+.||+.|+-= ..+=.|.. +-|--...++........+
T Consensus 221 WG~~HE~GH~~Q---~~~~~~~g--~~EvTnNi~sl~~~~~~~~ 259 (307)
T PF13402_consen 221 WGPWHELGHNHQ---QGPWTWSG--MGEVTNNIYSLYVQEKFGN 259 (307)
T ss_dssp HHHHHHHHHHH----BGGG--TT---TTTTHHHHHHHHHHHTT-
T ss_pred eeehhhhhhhcC---ccccccCC--CCchhhHHHHHHHHHHHhc
Confidence 579999999842 22112333 5777777777766665543
No 71
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=24.72 E-value=2.2e+02 Score=29.99 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 004417 298 KQRVATVVAHELAHQWFGNL 317 (754)
Q Consensus 298 ~~~~~~~iaHElaHqWfGnl 317 (754)
...++.+++||+|||=-+..
T Consensus 272 ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 272 DDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999987653
No 72
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=24.42 E-value=2.5e+02 Score=27.93 Aligned_cols=39 Identities=18% Similarity=-0.014 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhcCCcC-----ccccchhHHhhhHHHHHHHH
Q 004417 301 VATVVAHELAHQWFGNLVT-----MEWWTHLWLNEGFATWVSYL 339 (754)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt-----~~~w~d~WLnEGfA~y~~~~ 339 (754)
-..++|||+.|-|+....- ...|...=..|--|++++..
T Consensus 72 ~rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~ 115 (213)
T COG2856 72 KRFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAE 115 (213)
T ss_pred HHHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHH
Confidence 4568999999999986531 12223333456666666644
No 73
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=24.37 E-value=1.9e+02 Score=28.75 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q 004417 301 VATVVAHELAHQW 313 (754)
Q Consensus 301 ~~~~iaHElaHqW 313 (754)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999985
No 74
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=24.30 E-value=1.7e+02 Score=34.79 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=43.9
Q ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCC--------Ccccccc----cceeeeccccc
Q 004417 220 KVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFA--------AGAMENY----GLVTYRETALL 287 (754)
Q Consensus 220 ~v~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~--------~gamEn~----gli~~~e~~ll 287 (754)
.+.+|..++.....+.+.+.....+.+=..++...-|.+-..++..-.|. .|+|=+. |++.+.+.
T Consensus 242 ~lE~Wt~~dki~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~~--- 318 (716)
T KOG3607|consen 242 GLEIWTDGNKIDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHSD--- 318 (716)
T ss_pred EEEecCCCCeecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCcc---
Confidence 35678887776665555555666666655556533455444443321221 2344332 22222222
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHH
Q 004417 288 YDDQHSAAANKQRVATVVAHELAHQ 312 (754)
Q Consensus 288 ~~~~~~~~~~~~~~~~~iaHElaHq 312 (754)
.....+.++||||+|-
T Consensus 319 ---------~~~~~a~v~AhelgH~ 334 (716)
T KOG3607|consen 319 ---------ILLAFAVVLAHELGHN 334 (716)
T ss_pred ---------cchhHHHHHHHHHHhh
Confidence 1234788999999995
No 75
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=23.80 E-value=55 Score=27.65 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=22.1
Q ss_pred HHHhhCHHHHHHHHHHHHHHhccCCCCHHH
Q 004417 402 LQNYLGAECFQRSLASYIKKYACSNAKTED 431 (754)
Q Consensus 402 L~~~lG~~~F~~~l~~yl~~~~~~~~~~~d 431 (754)
++..||++.|....+.|+.++.-.+.+..+
T Consensus 55 ~~~llG~~~f~~la~~y~~~~p~~s~~l~~ 84 (94)
T PF09836_consen 55 VRALLGEEFFDALARAYIRAHPSRSPDLND 84 (94)
T ss_dssp GGGGS-HHHHHHHHHHHHHSGGGG-S-GGG
T ss_pred HHHHhCHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 467789999999999999998866655443
No 76
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=22.63 E-value=51 Score=32.09 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q 004417 299 QRVATVVAHELAHQW 313 (754)
Q Consensus 299 ~~~~~~iaHElaHqW 313 (754)
.....++||||+|.+
T Consensus 140 ~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 140 YNGAITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CceehhhHHhHHHhc
Confidence 346789999999987
No 77
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=21.36 E-value=4.4e+02 Score=28.32 Aligned_cols=117 Identities=16% Similarity=0.220 Sum_probs=68.2
Q ss_pred hHHHHHHHHHH-HHHhccCChHHHHHHHHhcCCCCc--------HHHHHHH----HHHHHHHHHHHhccChHHHH-HHHH
Q 004417 568 DRFGILDDHFA-LCMARQQTLTSLLTLMASYSEETE--------YTVLSNL----ITISYKIGRIAADARPELLD-YLKQ 633 (754)
Q Consensus 568 ~r~~li~D~~~-l~~~g~~~~~~~l~l~~~l~~E~~--------~~~w~~~----~~~l~~l~~~~~~~~~~~~~-~~~~ 633 (754)
++-|+|||+-. |.-+.-++|..-|.|+..-..|.. -.+|.-. ..-|..|.+.+... |+..+ .+..
T Consensus 319 ~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~-p~l~nll~d~ 397 (487)
T KOG2653|consen 319 DKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRN-PDLANLLLDP 397 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcC-ccHhhhccCH
Confidence 58999999854 556677899999999876554432 2445432 11233444444332 22211 1111
Q ss_pred HHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhHhcCCCCCCCChhhhhHH
Q 004417 634 FFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRKAA 705 (754)
Q Consensus 634 ~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~-~c~~~A~~~f~~~~~~~~~~~i~~~lr~~v 705 (754)
|+.+.+.. ....+|. ++..|..+|.+ +|...|+..|+.|.+ ..+|+||.++-
T Consensus 398 fF~~~v~~---------------~q~~wr~-vV~~a~~~gIptP~~st~Lafydgyr~----e~lpaNllQAq 450 (487)
T KOG2653|consen 398 FFAKAVEE---------------AQDSWRR-VVALAVEAGIPTPAFSTALAFYDGYRS----ERLPANLLQAQ 450 (487)
T ss_pred HHHHHHHH---------------HHHHHHH-HHHHHHhcCCCChhHHHHHHHHhhhhh----hcCcHHHHHHH
Confidence 22111111 1233444 45567788864 899999999998863 46899998743
No 78
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.29 E-value=1.2e+03 Score=26.08 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=45.3
Q ss_pred EecCCCCeEEEEEEEEEEEECC--CCEEEEEecC---cEEeEEEEeeccCCCCcc--ccCceEEEecCceEEEEEeCCCC
Q 004417 24 TPDLTSCKFGGSVAIDVDVVGD--TKFIVLNAAD---LTINNRSVSFTNKVSSKA--LEPTKVELVEADEILVLEFAETL 96 (754)
Q Consensus 24 ~~~~~~~~f~G~v~I~~~~~~~--~~~i~L~~~~---l~i~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~l~~~L 96 (754)
++|+.+....=++.|++++..+ .+...+-... -.+..+.+...+...... .....+.-....+...|.|++||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 4566666666666777776543 4555443332 122333332221111011 11112222223456899999999
Q ss_pred Ccc-eEEEEEEEEe
Q 004417 97 PTG-MGVLAIGFEG 109 (754)
Q Consensus 97 ~~g-~~~l~i~y~g 109 (754)
+|| +.+|.+.|.-
T Consensus 90 ~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 90 APGEKVTLTVEYVL 103 (432)
T ss_pred CCCCEEEEEEEEEe
Confidence 999 8888888764
No 79
>PF13606 Ank_3: Ankyrin repeat
Probab=21.07 E-value=1.2e+02 Score=19.41 Aligned_cols=20 Identities=15% Similarity=0.009 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 004417 664 EIFTALALLGHKETLNEASK 683 (754)
Q Consensus 664 ~il~~ac~~g~~~c~~~A~~ 683 (754)
..|.+||+.|+.++++...+
T Consensus 4 T~Lh~A~~~g~~e~v~~Ll~ 23 (30)
T PF13606_consen 4 TPLHLAASNGNIEIVKYLLE 23 (30)
T ss_pred CHHHHHHHhCCHHHHHHHHH
Confidence 35789999999988877654
No 80
>PF13041 PPR_2: PPR repeat family
Probab=20.43 E-value=2.2e+02 Score=20.39 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhHhcCCCCCCCChhhhh
Q 004417 663 GEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRK 703 (754)
Q Consensus 663 ~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~ 703 (754)
..++...|+.|. .++|.++|++..+. .+.||...
T Consensus 7 n~li~~~~~~~~---~~~a~~l~~~M~~~----g~~P~~~T 40 (50)
T PF13041_consen 7 NTLISGYCKAGK---FEEALKLFKEMKKR----GIKPDSYT 40 (50)
T ss_pred HHHHHHHHHCcC---HHHHHHHHHHHHHc----CCCCCHHH
Confidence 467888888887 58999999988743 47788776
No 81
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=20.17 E-value=1.1e+02 Score=22.90 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHH
Q 004417 408 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVN 445 (754)
Q Consensus 408 ~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~ 445 (754)
++..+..++.+++.--..++|..++...+++..|.++.
T Consensus 2 d~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~dL~ 39 (54)
T PF08766_consen 2 DEEIREAIREILREADLDTVTKKQVREQLEERFGVDLS 39 (54)
T ss_dssp HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS--S
T ss_pred HHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCCcH
Confidence 46678899999999888899999999999999998865
Done!