Query 004418
Match_columns 754
No_of_seqs 823 out of 3557
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 23:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00466 SRA SET and RING fi 100.0 3.9E-54 8.5E-59 414.3 15.4 150 261-426 2-155 (155)
2 PF02182 SAD_SRA: SAD/SRA doma 100.0 5.9E-52 1.3E-56 402.3 13.8 150 262-426 2-155 (155)
3 PF15227 zf-C3HC4_4: zinc fing 99.2 2E-11 4.3E-16 93.1 3.1 42 518-574 1-42 (42)
4 TIGR00599 rad18 DNA repair pro 99.0 3.6E-10 7.7E-15 124.9 8.5 73 510-603 21-93 (397)
5 PF15227 zf-C3HC4_4: zinc fing 99.0 1.2E-10 2.6E-15 88.9 2.8 39 146-184 1-42 (42)
6 smart00504 Ubox Modified RING 99.0 4.5E-10 9.7E-15 92.8 5.0 62 515-597 1-62 (63)
7 TIGR00599 rad18 DNA repair pro 99.0 4.7E-10 1E-14 123.9 5.1 75 136-214 19-93 (397)
8 PF14835 zf-RING_6: zf-RING of 98.9 4.1E-10 8.9E-15 92.0 2.2 63 510-595 2-65 (65)
9 PF14835 zf-RING_6: zf-RING of 98.9 1E-09 2.2E-14 89.7 3.8 63 138-206 2-65 (65)
10 smart00504 Ubox Modified RING 98.9 1.3E-09 2.9E-14 89.9 4.5 61 143-207 1-61 (63)
11 PF04564 U-box: U-box domain; 98.9 1.7E-09 3.6E-14 92.7 5.2 69 514-602 3-71 (73)
12 PLN03208 E3 ubiquitin-protein 98.9 1.5E-09 3.2E-14 108.3 3.9 52 139-190 14-80 (193)
13 KOG0287 Postreplication repair 98.9 7.1E-10 1.5E-14 116.5 1.6 75 136-214 16-90 (442)
14 PLN03208 E3 ubiquitin-protein 98.9 2E-09 4.4E-14 107.3 4.7 65 512-579 15-79 (193)
15 KOG0287 Postreplication repair 98.8 1.4E-09 3E-14 114.3 3.5 69 510-599 18-86 (442)
16 PF04564 U-box: U-box domain; 98.8 3.5E-09 7.7E-14 90.6 4.5 70 142-214 3-72 (73)
17 KOG0823 Predicted E3 ubiquitin 98.8 2.5E-09 5.5E-14 108.4 2.8 50 141-190 45-96 (230)
18 KOG2177 Predicted E3 ubiquitin 98.8 5.3E-09 1.1E-13 110.3 5.1 99 136-240 6-112 (386)
19 KOG0317 Predicted E3 ubiquitin 98.7 7.1E-09 1.5E-13 108.0 2.5 51 139-190 235-285 (293)
20 PF13923 zf-C3HC4_2: Zinc fing 98.7 1.3E-08 2.8E-13 76.3 2.5 31 518-548 1-32 (39)
21 PF13923 zf-C3HC4_2: Zinc fing 98.6 1.2E-08 2.7E-13 76.4 2.0 38 146-184 1-39 (39)
22 KOG0320 Predicted E3 ubiquitin 98.6 2.2E-08 4.8E-13 97.5 4.2 46 515-579 131-178 (187)
23 KOG2177 Predicted E3 ubiquitin 98.6 3.6E-08 7.8E-13 104.0 5.2 75 508-605 6-80 (386)
24 PF13920 zf-C3HC4_3: Zinc fing 98.6 2.7E-08 5.8E-13 78.8 3.1 47 514-579 1-48 (50)
25 PF13920 zf-C3HC4_3: Zinc fing 98.6 2E-08 4.4E-13 79.4 2.4 46 143-189 2-48 (50)
26 COG5432 RAD18 RING-finger-cont 98.6 2.5E-08 5.4E-13 103.1 3.2 67 511-598 21-87 (391)
27 PF00097 zf-C3HC4: Zinc finger 98.6 3.3E-08 7.1E-13 74.7 2.3 31 518-548 1-32 (41)
28 COG5432 RAD18 RING-finger-cont 98.6 3.1E-08 6.8E-13 102.4 2.8 74 137-214 19-92 (391)
29 PF13445 zf-RING_UBOX: RING-ty 98.5 3E-08 6.4E-13 75.9 1.8 31 518-549 1-35 (43)
30 KOG0823 Predicted E3 ubiquitin 98.5 4.5E-08 9.8E-13 99.4 2.9 50 514-579 46-95 (230)
31 PF13639 zf-RING_2: Ring finge 98.5 2.6E-08 5.7E-13 76.6 0.9 40 145-185 2-44 (44)
32 PF00097 zf-C3HC4: Zinc finger 98.5 6.3E-08 1.4E-12 73.2 2.4 39 146-184 1-41 (41)
33 PHA02929 N1R/p28-like protein; 98.4 1.5E-07 3.2E-12 97.8 3.7 49 141-190 172-228 (238)
34 KOG0317 Predicted E3 ubiquitin 98.4 1.3E-07 2.8E-12 98.8 3.0 48 513-579 237-284 (293)
35 PF13639 zf-RING_2: Ring finge 98.4 8.3E-08 1.8E-12 73.8 1.1 33 517-549 2-37 (44)
36 KOG0320 Predicted E3 ubiquitin 98.4 1.4E-07 3.1E-12 91.9 2.1 48 142-190 130-179 (187)
37 PHA02929 N1R/p28-like protein; 98.4 2.3E-07 4.9E-12 96.4 3.5 48 513-579 172-227 (238)
38 cd00162 RING RING-finger (Real 98.4 2.4E-07 5.3E-12 70.1 2.8 44 145-188 1-45 (45)
39 PHA02926 zinc finger-like prot 98.3 6E-07 1.3E-11 90.7 4.3 57 510-579 165-230 (242)
40 PHA02926 zinc finger-like prot 98.3 5E-07 1.1E-11 91.2 3.6 50 140-189 167-230 (242)
41 PF13445 zf-RING_UBOX: RING-ty 98.2 3.5E-07 7.7E-12 70.0 1.4 36 146-182 1-43 (43)
42 cd00162 RING RING-finger (Real 98.2 8.3E-07 1.8E-11 67.1 3.4 44 517-578 1-45 (45)
43 smart00184 RING Ring finger. E 98.2 7.2E-07 1.6E-11 65.1 2.9 39 146-184 1-39 (39)
44 PF14634 zf-RING_5: zinc-RING 98.2 1.1E-06 2.4E-11 67.7 3.3 41 517-576 1-44 (44)
45 cd04718 BAH_plant_2 BAH, or Br 98.2 1.8E-06 3.9E-11 82.9 5.2 27 36-63 1-27 (148)
46 PF14634 zf-RING_5: zinc-RING 98.2 1.3E-06 2.7E-11 67.4 2.9 41 145-186 1-44 (44)
47 smart00184 RING Ring finger. E 98.1 2.5E-06 5.5E-11 62.1 3.7 30 518-547 1-30 (39)
48 COG5574 PEX10 RING-finger-cont 98.1 1.1E-06 2.3E-11 90.9 2.2 50 141-190 213-263 (271)
49 KOG2164 Predicted E3 ubiquitin 98.1 1.2E-06 2.5E-11 97.9 2.5 49 143-191 186-238 (513)
50 KOG0311 Predicted E3 ubiquitin 98.1 4.5E-07 9.7E-12 96.8 -1.0 72 137-210 37-109 (381)
51 KOG2164 Predicted E3 ubiquitin 98.0 2.1E-06 4.5E-11 96.0 2.6 51 515-579 186-236 (513)
52 KOG0311 Predicted E3 ubiquitin 98.0 1.3E-06 2.8E-11 93.4 0.4 69 510-597 38-107 (381)
53 KOG0978 E3 ubiquitin ligase in 98.0 3.5E-06 7.5E-11 98.4 4.0 57 135-191 635-691 (698)
54 KOG0824 Predicted E3 ubiquitin 98.0 2.2E-06 4.7E-11 90.0 2.0 47 144-190 8-54 (324)
55 PF00628 PHD: PHD-finger; Int 98.0 2E-06 4.4E-11 68.1 1.0 47 14-61 1-49 (51)
56 KOG0825 PHD Zn-finger protein 98.0 2.7E-06 5.8E-11 97.9 1.7 50 12-62 215-265 (1134)
57 KOG2660 Locus-specific chromos 97.9 3.9E-06 8.4E-11 89.3 2.5 70 510-598 10-82 (331)
58 KOG4367 Predicted Zn-finger pr 97.9 7.9E-06 1.7E-10 88.8 4.8 92 512-603 1-160 (699)
59 COG5574 PEX10 RING-finger-cont 97.9 4.3E-06 9.3E-11 86.5 2.3 50 513-579 213-262 (271)
60 KOG2660 Locus-specific chromos 97.9 4.6E-06 9.9E-11 88.8 1.9 72 137-209 9-82 (331)
61 KOG4159 Predicted E3 ubiquitin 97.8 9.8E-06 2.1E-10 90.1 3.2 74 512-604 81-157 (398)
62 PF12678 zf-rbx1: RING-H2 zinc 97.8 1.5E-05 3.2E-10 68.3 3.0 40 145-185 21-73 (73)
63 KOG1244 Predicted transcriptio 97.8 7.9E-06 1.7E-10 84.3 1.3 47 13-60 282-328 (336)
64 smart00249 PHD PHD zinc finger 97.7 2.6E-05 5.6E-10 59.7 3.4 46 14-60 1-47 (47)
65 TIGR00570 cdk7 CDK-activating 97.7 2.9E-05 6.2E-10 83.2 4.3 48 143-190 3-55 (309)
66 TIGR00570 cdk7 CDK-activating 97.7 4.8E-05 1E-09 81.6 5.8 48 514-579 2-54 (309)
67 KOG4159 Predicted E3 ubiquitin 97.6 3.2E-05 6.9E-10 86.1 2.5 73 141-214 82-156 (398)
68 COG5243 HRD1 HRD ubiquitin lig 97.6 3.3E-05 7.1E-10 82.9 2.3 47 141-188 285-344 (491)
69 COG5152 Uncharacterized conser 97.6 3.9E-05 8.4E-10 75.9 2.6 46 515-579 196-241 (259)
70 KOG4367 Predicted Zn-finger pr 97.6 5.1E-05 1.1E-09 82.7 3.7 109 140-248 1-199 (699)
71 KOG0824 Predicted E3 ubiquitin 97.5 6.7E-05 1.4E-09 79.0 3.3 47 515-579 7-53 (324)
72 KOG4628 Predicted E3 ubiquitin 97.5 4.8E-05 1E-09 82.8 2.1 47 144-190 230-279 (348)
73 COG5152 Uncharacterized conser 97.4 6.8E-05 1.5E-09 74.3 2.1 47 143-190 196-242 (259)
74 PF12678 zf-rbx1: RING-H2 zinc 97.4 9.5E-05 2.1E-09 63.4 2.6 40 517-575 21-73 (73)
75 COG5222 Uncharacterized conser 97.4 0.00024 5.1E-09 74.4 5.4 66 516-600 275-341 (427)
76 KOG0825 PHD Zn-finger protein 97.3 3.4E-05 7.3E-10 89.2 -1.6 151 142-303 122-292 (1134)
77 KOG0802 E3 ubiquitin ligase [P 97.3 7.5E-05 1.6E-09 87.4 1.2 48 141-189 289-341 (543)
78 KOG0978 E3 ubiquitin ligase in 97.3 9E-05 2E-09 86.9 1.7 51 511-579 639-689 (698)
79 PF12861 zf-Apc11: Anaphase-pr 97.3 0.00018 3.8E-09 63.0 2.8 48 142-189 20-82 (85)
80 KOG4172 Predicted E3 ubiquitin 97.3 5.7E-05 1.2E-09 59.7 -0.2 46 144-189 8-54 (62)
81 COG5540 RING-finger-containing 97.2 0.00013 2.7E-09 76.8 1.8 50 141-190 321-373 (374)
82 KOG0957 PHD finger protein [Ge 97.2 0.0001 2.2E-09 81.6 1.0 47 13-60 545-595 (707)
83 KOG1813 Predicted E3 ubiquitin 97.2 0.0002 4.4E-09 75.3 2.8 47 143-190 241-287 (313)
84 KOG1813 Predicted E3 ubiquitin 97.2 0.00019 4E-09 75.6 2.1 46 515-579 241-286 (313)
85 KOG0802 E3 ubiquitin ligase [P 97.0 0.00025 5.5E-09 83.1 1.6 47 514-579 290-341 (543)
86 KOG4299 PHD Zn-finger protein 97.0 0.00031 6.6E-09 80.6 1.9 48 14-62 255-304 (613)
87 PF11789 zf-Nse: Zinc-finger o 97.0 0.00044 9.5E-09 56.4 2.3 34 514-547 10-44 (57)
88 PF11789 zf-Nse: Zinc-finger o 96.8 0.00073 1.6E-08 55.1 2.3 42 142-183 10-53 (57)
89 KOG2879 Predicted E3 ubiquitin 96.8 0.00078 1.7E-08 70.3 2.9 49 514-579 238-287 (298)
90 KOG1245 Chromatin remodeling c 96.8 0.00028 6.1E-09 89.5 -0.6 50 12-62 1108-1157(1404)
91 KOG0297 TNF receptor-associate 96.8 0.0011 2.5E-08 74.5 4.2 50 140-190 18-68 (391)
92 KOG0297 TNF receptor-associate 96.6 0.0011 2.4E-08 74.5 3.1 49 512-579 18-67 (391)
93 COG5540 RING-finger-containing 96.6 0.0012 2.7E-08 69.5 2.5 48 514-579 322-372 (374)
94 KOG1002 Nucleotide excision re 96.5 0.00073 1.6E-08 75.6 0.2 52 514-579 535-586 (791)
95 COG5222 Uncharacterized conser 96.4 0.0025 5.5E-08 66.9 3.9 67 143-211 274-341 (427)
96 COG5243 HRD1 HRD ubiquitin lig 96.4 0.0018 3.9E-08 69.9 2.4 47 514-579 286-345 (491)
97 PF12861 zf-Apc11: Anaphase-pr 96.4 0.0038 8.3E-08 54.7 3.9 48 516-579 33-82 (85)
98 KOG4628 Predicted E3 ubiquitin 96.3 0.002 4.3E-08 70.4 2.4 46 516-579 230-278 (348)
99 KOG0804 Cytoplasmic Zn-finger 96.3 0.0015 3.2E-08 72.4 1.3 49 138-189 170-222 (493)
100 KOG1039 Predicted E3 ubiquitin 96.3 0.0028 6E-08 69.6 3.3 55 513-579 159-221 (344)
101 KOG1039 Predicted E3 ubiquitin 96.3 0.002 4.3E-08 70.7 2.0 50 141-190 159-222 (344)
102 KOG2879 Predicted E3 ubiquitin 96.2 0.0037 7.9E-08 65.4 3.2 49 141-189 237-287 (298)
103 KOG4265 Predicted E3 ubiquitin 96.0 0.0031 6.8E-08 68.4 2.1 49 141-190 288-337 (349)
104 COG3440 Predicted restriction 95.6 0.00028 6.1E-09 74.4 -7.9 128 289-423 22-149 (301)
105 KOG4185 Predicted E3 ubiquitin 95.5 0.01 2.3E-07 64.1 3.6 67 143-209 3-77 (296)
106 KOG4172 Predicted E3 ubiquitin 95.4 0.0048 1E-07 49.1 0.3 46 516-579 8-54 (62)
107 KOG1785 Tyrosine kinase negati 95.3 0.007 1.5E-07 66.0 1.5 47 144-190 370-417 (563)
108 KOG0828 Predicted E3 ubiquitin 95.3 0.0074 1.6E-07 67.5 1.5 50 141-190 569-635 (636)
109 KOG4265 Predicted E3 ubiquitin 95.2 0.011 2.5E-07 64.1 2.6 47 514-579 289-336 (349)
110 KOG0804 Cytoplasmic Zn-finger 95.2 0.007 1.5E-07 67.2 0.9 35 514-548 174-212 (493)
111 KOG4185 Predicted E3 ubiquitin 95.1 0.022 4.8E-07 61.6 4.5 66 515-598 3-77 (296)
112 PF11793 FANCL_C: FANCL C-term 95.1 0.0087 1.9E-07 50.9 1.0 48 143-190 2-67 (70)
113 KOG1734 Predicted RING-contain 94.7 0.019 4.1E-07 59.9 2.5 48 142-189 223-281 (328)
114 KOG1785 Tyrosine kinase negati 94.7 0.018 3.8E-07 62.9 2.3 46 517-579 371-416 (563)
115 KOG1002 Nucleotide excision re 94.7 0.011 2.4E-07 66.4 0.8 50 141-190 534-587 (791)
116 KOG1571 Predicted E3 ubiquitin 94.6 0.02 4.4E-07 62.3 2.6 50 137-190 299-348 (355)
117 KOG1814 Predicted E3 ubiquitin 94.6 0.068 1.5E-06 59.1 6.5 60 506-576 175-237 (445)
118 KOG4692 Predicted E3 ubiquitin 94.6 0.018 4E-07 61.9 2.2 47 142-189 421-467 (489)
119 KOG4275 Predicted E3 ubiquitin 94.6 0.0079 1.7E-07 63.3 -0.7 42 143-189 300-342 (350)
120 KOG1001 Helicase-like transcri 94.3 0.021 4.5E-07 68.3 1.9 50 512-579 451-500 (674)
121 KOG3002 Zn finger protein [Gen 94.2 0.049 1.1E-06 59.1 4.3 84 139-232 44-128 (299)
122 KOG3161 Predicted E3 ubiquitin 94.1 0.026 5.6E-07 65.0 2.1 37 512-548 8-48 (861)
123 KOG0955 PHD finger protein BR1 94.0 0.035 7.6E-07 68.7 3.0 53 10-65 217-271 (1051)
124 KOG0827 Predicted E3 ubiquitin 93.9 0.032 6.9E-07 61.0 2.2 47 144-190 5-57 (465)
125 COG5194 APC11 Component of SCF 93.8 0.045 9.8E-07 47.1 2.5 29 160-189 53-81 (88)
126 KOG4443 Putative transcription 93.8 0.034 7.3E-07 64.6 2.2 53 9-62 65-117 (694)
127 smart00744 RINGv The RING-vari 93.7 0.052 1.1E-06 42.9 2.5 41 145-185 1-49 (49)
128 PF14447 Prok-RING_4: Prokaryo 93.5 0.03 6.5E-07 45.0 0.9 45 514-579 6-50 (55)
129 PF14447 Prok-RING_4: Prokaryo 93.5 0.037 7.9E-07 44.5 1.3 47 141-190 5-51 (55)
130 PF11793 FANCL_C: FANCL C-term 93.5 0.023 5.1E-07 48.3 0.2 57 515-579 2-66 (70)
131 PF14570 zf-RING_4: RING/Ubox 93.3 0.062 1.4E-06 42.2 2.3 43 146-188 1-47 (48)
132 KOG1645 RING-finger-containing 93.2 0.042 9.1E-07 60.6 1.7 49 142-190 3-57 (463)
133 KOG4275 Predicted E3 ubiquitin 92.9 0.012 2.7E-07 62.0 -2.7 42 515-579 300-342 (350)
134 KOG1512 PHD Zn-finger protein 92.9 0.05 1.1E-06 57.2 1.7 48 8-58 310-357 (381)
135 KOG0383 Predicted helicase [Ge 92.8 0.037 8E-07 65.9 0.7 43 14-60 49-91 (696)
136 KOG4692 Predicted E3 ubiquitin 92.8 0.061 1.3E-06 58.1 2.1 47 514-579 421-467 (489)
137 KOG1645 RING-finger-containing 92.6 0.072 1.6E-06 58.8 2.4 48 515-579 4-56 (463)
138 KOG3002 Zn finger protein [Gen 92.2 0.12 2.6E-06 56.1 3.6 59 513-598 46-105 (299)
139 COG5219 Uncharacterized conser 91.9 0.066 1.4E-06 64.1 1.3 51 512-579 1466-1523(1525)
140 KOG1001 Helicase-like transcri 91.9 0.072 1.6E-06 63.9 1.6 51 139-190 450-501 (674)
141 KOG3800 Predicted E3 ubiquitin 91.9 0.11 2.5E-06 55.0 2.9 46 145-190 2-52 (300)
142 KOG0828 Predicted E3 ubiquitin 91.9 0.091 2E-06 59.1 2.2 48 514-579 570-634 (636)
143 KOG3039 Uncharacterized conser 91.8 0.11 2.4E-06 53.7 2.6 47 514-579 220-270 (303)
144 KOG4362 Transcriptional regula 91.6 0.1 2.2E-06 61.7 2.3 57 507-579 13-69 (684)
145 COG5219 Uncharacterized conser 91.6 0.054 1.2E-06 64.8 0.0 51 139-189 1465-1523(1525)
146 KOG0827 Predicted E3 ubiquitin 91.4 0.14 3.1E-06 56.1 3.1 48 516-579 5-56 (465)
147 PF14570 zf-RING_4: RING/Ubox 91.4 0.16 3.5E-06 40.0 2.5 43 518-578 1-47 (48)
148 smart00744 RINGv The RING-vari 91.3 0.22 4.7E-06 39.4 3.2 42 517-575 1-49 (49)
149 PF07800 DUF1644: Protein of u 91.2 0.29 6.2E-06 47.9 4.5 20 514-533 1-20 (162)
150 KOG3800 Predicted E3 ubiquitin 90.9 0.16 3.4E-06 54.0 2.7 45 517-579 2-51 (300)
151 KOG1493 Anaphase-promoting com 90.9 0.086 1.9E-06 45.1 0.6 45 145-189 22-81 (84)
152 KOG1973 Chromatin remodeling p 90.1 0.15 3.2E-06 54.9 1.7 38 22-62 227-267 (274)
153 KOG1734 Predicted RING-contain 90.0 0.085 1.8E-06 55.3 -0.2 48 515-579 224-281 (328)
154 KOG4362 Transcriptional regula 90.0 0.14 3.1E-06 60.5 1.6 74 137-213 15-90 (684)
155 KOG2817 Predicted E3 ubiquitin 89.9 0.24 5.3E-06 54.8 3.2 52 512-579 331-385 (394)
156 KOG1571 Predicted E3 ubiquitin 89.8 0.12 2.6E-06 56.5 0.8 44 514-579 304-347 (355)
157 KOG4323 Polycomb-like PHD Zn-f 89.7 0.12 2.6E-06 58.6 0.6 50 12-62 168-223 (464)
158 KOG1941 Acetylcholine receptor 89.5 0.11 2.3E-06 57.0 0.1 46 142-187 364-414 (518)
159 PHA03096 p28-like protein; Pro 89.4 0.44 9.5E-06 51.4 4.6 58 487-549 155-220 (284)
160 PF04641 Rtf2: Rtf2 RING-finge 89.3 0.37 8.1E-06 51.4 4.0 46 514-579 112-161 (260)
161 KOG3039 Uncharacterized conser 89.2 0.25 5.5E-06 51.2 2.5 48 142-190 220-271 (303)
162 KOG3161 Predicted E3 ubiquitin 89.1 0.12 2.7E-06 59.7 0.2 43 139-185 7-53 (861)
163 COG5236 Uncharacterized conser 89.0 0.23 5E-06 53.6 2.1 51 512-579 58-108 (493)
164 COG5194 APC11 Component of SCF 88.9 0.43 9.4E-06 41.2 3.2 45 516-579 32-81 (88)
165 KOG4739 Uncharacterized protei 88.4 0.21 4.7E-06 51.9 1.4 43 144-189 4-48 (233)
166 KOG0954 PHD finger protein [Ge 88.1 0.21 4.5E-06 58.8 1.2 51 10-63 269-321 (893)
167 PF04641 Rtf2: Rtf2 RING-finge 88.0 0.68 1.5E-05 49.4 4.9 50 140-191 110-163 (260)
168 PF05290 Baculo_IE-1: Baculovi 87.5 0.64 1.4E-05 44.1 3.8 50 514-579 79-132 (140)
169 PF07800 DUF1644: Protein of u 85.9 0.61 1.3E-05 45.6 2.8 21 142-162 1-21 (162)
170 KOG2930 SCF ubiquitin ligase, 85.8 0.37 8.1E-06 43.6 1.2 28 160-188 80-107 (114)
171 KOG4739 Uncharacterized protei 85.7 0.28 6.1E-06 51.0 0.5 43 516-579 4-48 (233)
172 PF10367 Vps39_2: Vacuolar sor 85.5 0.86 1.9E-05 41.2 3.5 33 139-171 74-108 (109)
173 COG5034 TNG2 Chromatin remodel 85.5 0.31 6.8E-06 50.9 0.7 33 26-61 233-268 (271)
174 KOG1814 Predicted E3 ubiquitin 84.8 0.41 8.8E-06 53.2 1.2 47 140-186 181-237 (445)
175 COG5236 Uncharacterized conser 84.8 0.49 1.1E-05 51.2 1.8 47 142-188 60-107 (493)
176 COG5220 TFB3 Cdk activating ki 84.5 0.41 8.8E-06 49.5 0.9 47 515-579 10-64 (314)
177 KOG1493 Anaphase-promoting com 84.5 0.38 8.2E-06 41.2 0.6 48 516-579 32-81 (84)
178 KOG3970 Predicted E3 ubiquitin 84.3 1.5 3.3E-05 45.0 4.8 48 142-189 49-105 (299)
179 KOG0826 Predicted E3 ubiquitin 84.1 0.46 1E-05 51.3 1.2 46 142-188 299-345 (357)
180 PF14446 Prok-RING_1: Prokaryo 84.0 0.6 1.3E-05 37.6 1.5 32 12-43 5-37 (54)
181 KOG2817 Predicted E3 ubiquitin 83.4 0.7 1.5E-05 51.3 2.3 49 139-187 330-383 (394)
182 PF02891 zf-MIZ: MIZ/SP-RING z 82.2 0.96 2.1E-05 35.9 2.0 45 143-187 2-50 (50)
183 KOG1812 Predicted E3 ubiquitin 81.9 0.96 2.1E-05 51.0 2.7 52 515-579 146-203 (384)
184 KOG0826 Predicted E3 ubiquitin 81.1 1.2 2.6E-05 48.2 2.9 36 515-550 300-336 (357)
185 COG5220 TFB3 Cdk activating ki 80.0 0.85 1.8E-05 47.2 1.3 47 143-189 10-64 (314)
186 COG5141 PHD zinc finger-contai 79.8 0.79 1.7E-05 51.8 1.1 50 11-63 192-243 (669)
187 KOG2932 E3 ubiquitin ligase in 79.2 0.82 1.8E-05 49.0 0.9 43 144-189 91-134 (389)
188 COG5175 MOT2 Transcriptional r 77.8 1.3 2.8E-05 47.9 1.9 47 515-579 14-64 (480)
189 PF05290 Baculo_IE-1: Baculovi 77.7 1.5 3.3E-05 41.7 2.1 49 142-190 79-133 (140)
190 COG5109 Uncharacterized conser 76.9 1.6 3.5E-05 46.9 2.3 52 511-578 332-386 (396)
191 KOG2114 Vacuolar assembly/sort 76.8 2.3 4.9E-05 51.4 3.7 43 515-579 840-883 (933)
192 PHA03096 p28-like protein; Pro 76.3 1.3 2.8E-05 47.9 1.4 43 144-186 179-231 (284)
193 COG5175 MOT2 Transcriptional r 75.6 1.7 3.6E-05 47.2 2.0 46 145-190 16-65 (480)
194 KOG0298 DEAD box-containing he 75.6 1.5 3.3E-05 55.0 2.0 53 509-580 1147-1200(1394)
195 KOG2114 Vacuolar assembly/sort 74.9 2.4 5.1E-05 51.3 3.2 41 143-187 840-881 (933)
196 KOG1815 Predicted E3 ubiquitin 74.3 2.6 5.6E-05 48.5 3.3 36 514-549 69-105 (444)
197 KOG0298 DEAD box-containing he 73.9 1 2.2E-05 56.6 -0.2 53 135-188 1145-1198(1394)
198 KOG2932 E3 ubiquitin ligase in 73.4 1.7 3.7E-05 46.6 1.5 43 516-579 91-134 (389)
199 KOG4445 Uncharacterized conser 73.3 0.76 1.7E-05 49.1 -1.2 49 142-190 114-187 (368)
200 KOG1941 Acetylcholine receptor 73.1 1.6 3.6E-05 48.1 1.2 49 514-579 364-416 (518)
201 PF03854 zf-P11: P-11 zinc fin 72.9 2 4.3E-05 33.7 1.3 43 145-190 4-47 (50)
202 KOG1100 Predicted E3 ubiquitin 70.8 2 4.3E-05 44.4 1.2 40 146-190 161-201 (207)
203 PF10367 Vps39_2: Vacuolar sor 69.8 1.6 3.4E-05 39.4 0.2 32 512-543 75-108 (109)
204 KOG1428 Inhibitor of type V ad 69.0 3.8 8.3E-05 51.8 3.1 63 142-213 3485-3559(3738)
205 PF08746 zf-RING-like: RING-li 68.4 5.4 0.00012 30.6 2.8 33 518-550 1-36 (43)
206 PF02891 zf-MIZ: MIZ/SP-RING z 67.8 2 4.3E-05 34.1 0.4 47 515-576 2-49 (50)
207 smart00468 PreSET N-terminal t 67.7 2.8 6.1E-05 37.7 1.4 31 452-486 2-33 (98)
208 KOG1246 DNA-binding protein ju 67.2 4.1 9E-05 51.1 3.2 49 13-63 156-204 (904)
209 PF08746 zf-RING-like: RING-li 67.1 5.5 0.00012 30.6 2.6 39 146-184 1-43 (43)
210 TIGR01562 FdhE formate dehydro 64.3 5.1 0.00011 43.8 2.7 39 10-61 182-231 (305)
211 KOG1812 Predicted E3 ubiquitin 63.7 5.1 0.00011 45.3 2.8 33 143-175 146-182 (384)
212 PRK03564 formate dehydrogenase 63.4 5.7 0.00012 43.5 2.9 39 10-61 185-233 (309)
213 PF10272 Tmpp129: Putative tra 63.3 4 8.6E-05 45.5 1.7 27 164-190 314-352 (358)
214 KOG1100 Predicted E3 ubiquitin 62.1 2.9 6.3E-05 43.2 0.4 39 518-579 161-200 (207)
215 KOG1940 Zn-finger protein [Gen 61.5 4.2 9E-05 43.7 1.4 42 144-186 159-204 (276)
216 KOG3579 Predicted E3 ubiquitin 60.6 3.4 7.3E-05 44.0 0.5 35 142-176 267-305 (352)
217 KOG2930 SCF ubiquitin ligase, 57.9 7.8 0.00017 35.4 2.3 28 532-578 80-107 (114)
218 KOG1940 Zn-finger protein [Gen 57.9 6.1 0.00013 42.5 1.9 45 515-579 158-206 (276)
219 PHA02825 LAP/PHD finger-like p 56.6 11 0.00023 37.3 3.2 47 142-189 7-59 (162)
220 PF05883 Baculo_RING: Baculovi 56.4 8.9 0.00019 36.8 2.6 33 515-547 26-67 (134)
221 KOG1952 Transcription factor N 55.9 9.2 0.0002 46.4 3.1 58 508-577 183-245 (950)
222 COG3058 FdhE Uncharacterized p 54.4 3.4 7.5E-05 44.0 -0.6 30 10-39 183-223 (308)
223 KOG3799 Rab3 effector RIM1 and 54.2 13 0.00029 35.4 3.3 58 511-579 61-118 (169)
224 PF05605 zf-Di19: Drought indu 53.6 6.8 0.00015 31.3 1.1 42 514-579 1-42 (54)
225 KOG1952 Transcription factor N 53.3 7.1 0.00015 47.4 1.7 47 142-188 190-246 (950)
226 PF07191 zinc-ribbons_6: zinc- 52.1 1.5 3.2E-05 37.4 -3.0 41 515-579 1-41 (70)
227 PHA02862 5L protein; Provision 51.8 12 0.00026 36.3 2.6 45 145-190 4-54 (156)
228 PF13831 PHD_2: PHD-finger; PD 50.6 2.2 4.8E-05 31.5 -1.9 32 26-60 3-35 (36)
229 COG3813 Uncharacterized protei 50.2 15 0.00033 31.4 2.6 25 534-579 28-52 (84)
230 KOG3970 Predicted E3 ubiquitin 50.0 31 0.00068 35.7 5.4 62 507-579 39-105 (299)
231 PF12906 RINGv: RING-variant d 49.3 7.8 0.00017 30.3 0.8 29 518-549 1-39 (47)
232 PF10272 Tmpp129: Putative tra 47.2 14 0.00031 41.2 2.7 39 535-579 313-351 (358)
233 COG5109 Uncharacterized conser 47.0 11 0.00025 40.7 1.8 48 139-186 332-384 (396)
234 PF04216 FdhE: Protein involve 46.8 8.8 0.00019 41.6 1.0 38 12-62 172-219 (290)
235 PF02318 FYVE_2: FYVE-type zin 46.4 11 0.00024 35.3 1.5 45 142-186 53-102 (118)
236 PHA02862 5L protein; Provision 46.4 17 0.00037 35.2 2.8 45 517-579 4-53 (156)
237 PF07191 zinc-ribbons_6: zinc- 45.3 3.6 7.9E-05 35.0 -1.7 42 143-190 1-42 (70)
238 KOG1512 PHD Zn-finger protein 44.9 7.2 0.00016 41.6 -0.0 51 10-61 256-315 (381)
239 KOG1815 Predicted E3 ubiquitin 44.6 12 0.00026 43.1 1.7 36 141-176 68-104 (444)
240 KOG3268 Predicted E3 ubiquitin 44.2 12 0.00026 37.3 1.4 49 142-190 164-229 (234)
241 PF05033 Pre-SET: Pre-SET moti 40.6 9.9 0.00021 34.3 0.2 30 453-486 1-31 (103)
242 KOG4323 Polycomb-like PHD Zn-f 40.6 21 0.00045 41.1 2.8 47 13-62 84-132 (464)
243 PF10235 Cript: Microtubule-as 40.5 16 0.00034 32.8 1.4 37 143-189 44-80 (90)
244 PF15446 zf-PHD-like: PHD/FYVE 40.5 21 0.00046 35.5 2.5 21 23-43 120-140 (175)
245 PF10080 DUF2318: Predicted me 40.1 12 0.00026 34.4 0.7 30 14-43 37-68 (102)
246 KOG2034 Vacuolar sorting prote 39.1 25 0.00055 43.1 3.3 38 138-175 812-851 (911)
247 PF05883 Baculo_RING: Baculovi 39.1 13 0.00028 35.7 0.7 33 143-175 26-67 (134)
248 COG3813 Uncharacterized protei 38.7 23 0.0005 30.3 2.1 26 162-190 28-53 (84)
249 PF07649 C1_3: C1-like domain; 38.7 11 0.00023 26.5 0.1 28 14-41 2-29 (30)
250 KOG3268 Predicted E3 ubiquitin 37.8 26 0.00056 35.1 2.6 64 508-579 158-228 (234)
251 KOG3579 Predicted E3 ubiquitin 37.7 15 0.00032 39.4 1.0 36 515-550 268-307 (352)
252 KOG3899 Uncharacterized conser 37.5 16 0.00034 39.2 1.1 30 161-190 325-366 (381)
253 PF14569 zf-UDP: Zinc-binding 37.0 27 0.00058 30.4 2.2 47 143-189 9-62 (80)
254 PF03854 zf-P11: P-11 zinc fin 35.7 14 0.0003 29.1 0.3 31 530-579 15-46 (50)
255 KOG1428 Inhibitor of type V ad 35.6 32 0.00068 44.4 3.3 56 515-579 3486-3544(3738)
256 PF06906 DUF1272: Protein of u 35.2 29 0.00062 28.4 2.0 42 517-579 7-52 (57)
257 KOG1832 HIV-1 Vpr-binding prot 34.5 33 0.00072 42.2 3.2 23 697-719 1472-1494(1516)
258 PF14569 zf-UDP: Zinc-binding 34.2 45 0.00098 29.1 3.2 47 515-579 9-62 (80)
259 KOG0383 Predicted helicase [Ge 34.2 26 0.00057 42.4 2.4 30 32-62 1-30 (696)
260 PF10571 UPF0547: Uncharacteri 32.6 22 0.00047 24.5 0.8 21 517-537 2-24 (26)
261 PF13824 zf-Mss51: Zinc-finger 32.6 31 0.00067 28.1 1.8 25 14-38 1-25 (55)
262 cd00350 rubredoxin_like Rubred 32.2 27 0.00058 25.2 1.3 10 53-62 16-25 (33)
263 PF06524 NOA36: NOA36 protein; 32.2 83 0.0018 33.5 5.3 51 514-579 170-220 (314)
264 PF10497 zf-4CXXC_R1: Zinc-fin 31.9 35 0.00075 31.5 2.3 54 516-579 8-72 (105)
265 KOG1473 Nucleosome remodeling 31.9 27 0.00058 43.9 2.0 46 12-61 344-389 (1414)
266 KOG0956 PHD finger protein AF1 30.7 26 0.00056 41.8 1.5 46 13-61 6-55 (900)
267 PLN02400 cellulose synthase 30.4 38 0.00083 42.8 3.0 67 518-621 39-112 (1085)
268 PF12218 End_N_terminal: N ter 29.7 18 0.00039 30.1 0.1 26 408-433 39-64 (67)
269 KOG2169 Zn-finger transcriptio 29.6 47 0.001 40.2 3.5 72 513-601 304-376 (636)
270 COG5183 SSM4 Protein involved 28.7 77 0.0017 38.7 4.9 48 142-189 11-66 (1175)
271 KOG4299 PHD Zn-finger protein 28.6 37 0.00081 40.2 2.3 48 14-63 394-444 (613)
272 KOG3113 Uncharacterized conser 27.8 68 0.0015 34.0 3.8 48 141-191 109-160 (293)
273 PF03107 C1_2: C1 domain; Int 27.6 44 0.00096 23.5 1.7 28 14-41 2-29 (30)
274 PF05715 zf-piccolo: Piccolo Z 27.3 34 0.00075 28.2 1.3 50 13-62 3-57 (61)
275 PF13832 zf-HC5HC2H_2: PHD-zin 27.3 31 0.00067 31.5 1.2 33 12-46 55-89 (110)
276 PF02318 FYVE_2: FYVE-type zin 27.1 51 0.0011 30.8 2.6 30 514-543 53-87 (118)
277 PRK04023 DNA polymerase II lar 27.1 50 0.0011 41.4 3.2 44 515-579 626-674 (1121)
278 PF14353 CpXC: CpXC protein 27.0 51 0.0011 31.0 2.6 13 567-579 37-49 (128)
279 KOG2068 MOT2 transcription fac 26.9 42 0.00092 36.9 2.3 46 515-579 249-298 (327)
280 PHA02825 LAP/PHD finger-like p 26.4 63 0.0014 32.0 3.1 48 514-579 7-59 (162)
281 KOG3899 Uncharacterized conser 26.3 30 0.00065 37.2 1.0 41 533-579 325-365 (381)
282 PF06906 DUF1272: Protein of u 26.1 52 0.0011 26.9 2.1 43 145-190 7-53 (57)
283 PF01363 FYVE: FYVE zinc finge 26.0 12 0.00027 31.1 -1.6 33 142-174 8-44 (69)
284 PF15616 TerY-C: TerY-C metal 25.9 40 0.00087 32.4 1.7 47 137-190 71-117 (131)
285 KOG2462 C2H2-type Zn-finger pr 25.3 41 0.00088 36.1 1.7 76 142-225 160-254 (279)
286 PF00130 C1_1: Phorbol esters/ 25.1 53 0.0011 25.7 2.0 37 11-47 10-48 (53)
287 KOG2113 Predicted RNA binding 24.9 49 0.0011 36.0 2.3 48 139-189 339-387 (394)
288 PF12773 DZR: Double zinc ribb 24.7 59 0.0013 25.2 2.2 29 162-190 11-41 (50)
289 PF06844 DUF1244: Protein of u 24.6 40 0.00087 28.4 1.2 14 536-549 11-24 (68)
290 PF10497 zf-4CXXC_R1: Zinc-fin 24.1 28 0.00061 32.1 0.3 49 13-62 8-69 (105)
291 PF05191 ADK_lid: Adenylate ki 23.7 43 0.00093 24.8 1.1 28 28-62 2-29 (36)
292 PF07975 C1_4: TFIIH C1-like d 22.3 74 0.0016 25.6 2.3 25 160-185 26-50 (51)
293 PRK04023 DNA polymerase II lar 22.2 77 0.0017 39.9 3.4 66 142-210 625-695 (1121)
294 KOG2034 Vacuolar sorting prote 21.8 47 0.001 41.0 1.5 39 512-550 814-854 (911)
295 KOG3799 Rab3 effector RIM1 and 21.2 1.2E+02 0.0025 29.3 3.7 25 140-169 62-87 (169)
296 PF00301 Rubredoxin: Rubredoxi 20.7 52 0.0011 25.9 1.1 9 54-62 34-42 (47)
No 1
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=100.00 E-value=3.9e-54 Score=414.27 Aligned_cols=150 Identities=50% Similarity=0.841 Sum_probs=143.1
Q ss_pred CCCCCCCCCCCCCCCCCcccccCccchhhhhhhccCcCCCCCCcccCC----CCcceEEeccCCCccCCCCCcEEEEEec
Q 004418 261 PDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQS----NYGSQSVALSGGYEDDEDHGEWFLYTGS 336 (754)
Q Consensus 261 ~~~~Gpip~~~~p~~~~Gv~vG~~~~~r~~~~~~G~H~~~~~GI~~~~----~~Ga~Siv~sggy~dd~d~gd~~~YtG~ 336 (754)
..+||+|| ||+|||||++|+||+++|||+++|+||++++ ..||+|||+||||+||+|+||+|+|||+
T Consensus 2 ~~~~G~vp---------Gv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~~~~~~A~SIV~SggYedd~D~gd~liYtG~ 72 (155)
T smart00466 2 KHIFGPVP---------GVEVGDIFFFRVELCLVGLHRPTQAGIDGLTADEGEPGATSVVSSGGYEDDTDDGDVLIYTGQ 72 (155)
T ss_pred CceEeCCC---------CccCCCEEcchhHhhhhcccCcccCCcccccccCCCccEEEEEECCCccCcccCCCEEEEEcc
Confidence 46799999 9999999999999999999999999999998 6889999999999999999999999999
Q ss_pred CCCCCCCCccCCccccccchhhhhHHHHHHHhhcCCcEEEEecccCCCCCCCCCCceEEceeeEEEEEEEeeCCcCceEE
Q 004418 337 GGRDLSGNKRTNKEQSFDQKFEKMNEALRVSCKKGYPVRVVRSHKEKRSSYAPEKGVRYDGVYRIEKCWRKIGIQGFKVC 416 (754)
Q Consensus 337 gg~~~~~~~~~~~~~~~dQ~~~~~n~AL~~s~~~g~pVRViR~~~~~~s~~ap~~gyrYDGLY~V~~~w~~~g~~g~~v~ 416 (754)
||++.. + .|..||+|++||+||++||++++|||||||++. ++.|+|.++|||||||+|++||.++|++||.||
T Consensus 73 gg~~~~--~----~~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~-~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~ 145 (155)
T smart00466 73 GGRDMT--H----GQPEDQKLERGNLALEASCRKGIPVRVVRGMKG-YSKYAPGKGYIYDGLYRIVDYWREVGKSGFLVF 145 (155)
T ss_pred CCccCC--C----CCccccEecchhHHHHHHHhcCCceEEEccccc-cCCCCCCCeEEECcEEEEEEEEEecCCCCcEEE
Confidence 999852 2 388999999999999999999999999999997 789999999999999999999999999999999
Q ss_pred EEEEEEeCCC
Q 004418 417 RYLFVRCDNE 426 (754)
Q Consensus 417 ~f~l~R~~~q 426 (754)
||+|+|+|||
T Consensus 146 kfkL~R~~gQ 155 (155)
T smart00466 146 KFKLVRIPGQ 155 (155)
T ss_pred EEEEEeCCCC
Confidence 9999999998
No 2
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain. Further characteristics of the domain are the conservation of up to 13 evenly spaced glycine residues and a VRV(I/V)RG motif. The domain is mainly found in plants and animals and in bacteria. In animals, this domain is associated with the Np95-like ring finger protein and the related gene product Np97, which contains PHD and RING FINGER domains and which is an important determinant in cell cycle progression. Np95 is a chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained in Np95 is indispensable both for the interaction with histones and for chromatin binding in vivo [, ]. In plants the SRA-YDG domain is associated with the SET domain, found in a family of histone methyl transferases, and in bacteria it is found in association with HNH, a non-specific nuclease motif [, ].; GO: 0042393 histone binding; PDB: 2ZO1_B 2ZKD_A 2ZO0_B 2ZKF_A 2ZKG_B 3FDE_A 3F8I_A 2ZO2_B 3F8J_B 2ZKE_A ....
Probab=100.00 E-value=5.9e-52 Score=402.27 Aligned_cols=150 Identities=53% Similarity=0.864 Sum_probs=126.0
Q ss_pred CCCCCCCCCCCCCCCCcccccCccchhhhhhhccCcCCCCCCcccCCCCc---ceEEeccCCCccCCCCCcEEEEEecCC
Q 004418 262 DHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNYG---SQSVALSGGYEDDEDHGEWFLYTGSGG 338 (754)
Q Consensus 262 ~~~Gpip~~~~p~~~~Gv~vG~~~~~r~~~~~~G~H~~~~~GI~~~~~~G---a~Siv~sggy~dd~d~gd~~~YtG~gg 338 (754)
.+||+|| ||+||+||++|++|+++|+|+++|+||+|++..| |+|||+||+|+||+|+||+|+|||+||
T Consensus 2 k~~G~ip---------Gv~vG~~f~~r~~~~~~G~H~~~~~GI~g~~~~g~~~A~SIV~Sg~y~dd~D~gd~l~YtG~gg 72 (155)
T PF02182_consen 2 KRFGHIP---------GVEVGDWFPYRMELSIVGLHGPTQAGIDGMKKEGGPVAYSIVLSGGYEDDEDNGDVLIYTGQGG 72 (155)
T ss_dssp TSSS--T---------T--TT-EESSHHHHHHTTSS--SS-SEEEETTTESEEEEEEEESSSSTTCEECSSEEEEE-SSS
T ss_pred CcEeCCC---------CccCccEEhHHHHHhHhccCCCccCCeecccCCCceeeEEEEECCCcccccCCCCEEEEEcCCC
Confidence 6899999 9999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCCCccCCccccccchhhhhHHHHHHHhhcCCcEEEEecccCCCCCCCCCCc-eEEceeeEEEEEEEeeCCcCceEEE
Q 004418 339 RDLSGNKRTNKEQSFDQKFEKMNEALRVSCKKGYPVRVVRSHKEKRSSYAPEKG-VRYDGVYRIEKCWRKIGIQGFKVCR 417 (754)
Q Consensus 339 ~~~~~~~~~~~~~~~dQ~~~~~n~AL~~s~~~g~pVRViR~~~~~~s~~ap~~g-yrYDGLY~V~~~w~~~g~~g~~v~~ 417 (754)
++..+++ |..||+|+++|+||++|+++++|||||||++. .+.|||..| |||||||+|++||.++|++||.|||
T Consensus 73 ~~~~~~~-----~~~dQ~l~~gN~AL~~S~~~~~PVRViR~~~~-~~~~ap~~g~yrYDGLY~V~~~w~~~g~~G~~v~k 146 (155)
T PF02182_consen 73 NDLSGNK-----QPKDQKLERGNLALANSMKTGNPVRVIRGYKL-KSSYAPKGGIYRYDGLYKVVKYWREKGKSGFKVFK 146 (155)
T ss_dssp B--TTT------B-S---SSHHHHHHHHHSGGS-EEEEEEEGGG-GGTTS-SSS-EEEEEEEEEEEEEEEE-TTSSEEEE
T ss_pred ccccccc-----ccccccccchhHHHHHHHhcCCCeEEEeecCC-CCccCCcCCCEEeCcEEEEEEEEEEeCCCCcEEEE
Confidence 9987765 89999999999999999999999999999997 466999999 9999999999999999999999999
Q ss_pred EEEEEeCCC
Q 004418 418 YLFVRCDNE 426 (754)
Q Consensus 418 f~l~R~~~q 426 (754)
|+|+|++||
T Consensus 147 F~L~R~~gQ 155 (155)
T PF02182_consen 147 FKLVRLPGQ 155 (155)
T ss_dssp EEEEE-TSS
T ss_pred EEEEECCCC
Confidence 999999998
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.15 E-value=2e-11 Score=93.11 Aligned_cols=42 Identities=38% Similarity=1.060 Sum_probs=32.3
Q ss_pred cccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCC
Q 004418 518 CLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSC 574 (754)
Q Consensus 518 CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~C 574 (754)
||||+++|.+||+|+|||+||..||.+++.... ...+.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~---------------~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS---------------GSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS---------------SST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC---------------CcCCCCcCC
Confidence 899999999999999999999999999998653 112689987
No 4
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=3.6e-10 Score=124.90 Aligned_cols=73 Identities=25% Similarity=0.645 Sum_probs=63.0
Q ss_pred HhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccH
Q 004418 510 EKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNR 589 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~ 589 (754)
..|+..|.|+||+++|.+|++++|||+||..||..++... ..||.|+..+. ...+..|.
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-------------------~~CP~Cr~~~~--~~~Lr~N~ 79 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-------------------PKCPLCRAEDQ--ESKLRSNW 79 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-------------------CCCCCCCCccc--cccCccch
Confidence 4577899999999999999999999999999999988643 27999999987 35788999
Q ss_pred HHHHHHHHHHcccC
Q 004418 590 ELMDVIESLKHKTE 603 (754)
Q Consensus 590 ~L~~lve~l~~~~~ 603 (754)
.|.+||+.|+....
T Consensus 80 ~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 80 LVSEIVESFKNLRP 93 (397)
T ss_pred HHHHHHHHHHHhhH
Confidence 99999999875443
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.03 E-value=1.2e-10 Score=88.86 Aligned_cols=39 Identities=36% Similarity=1.082 Sum_probs=31.2
Q ss_pred ccccCCCCCCCeecCCCCcchhhhHHhhhccCC---cccccc
Q 004418 146 CSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGK---RTCAKC 184 (754)
Q Consensus 146 C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~---~~CP~C 184 (754)
|+||+++|.+||+|+|||+||..||.+|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999988532 479987
No 6
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.99 E-value=4.5e-10 Score=92.79 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=54.3
Q ss_pred ccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHHHHHH
Q 004418 515 EFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNRELMDV 594 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~L~~l 594 (754)
+|.||||+++|.+||+++|||+||+.||..++... ..||.|+..++ ..++..|..|.+.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~-------------------~~cP~~~~~~~--~~~l~~~~~l~~~ 59 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSH-------------------GTDPVTGQPLT--HEDLIPNLALKSA 59 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHC-------------------CCCCCCcCCCC--hhhceeCHHHHHH
Confidence 47899999999999999999999999999998743 27999999987 4678889988888
Q ss_pred HHH
Q 004418 595 IES 597 (754)
Q Consensus 595 ve~ 597 (754)
++.
T Consensus 60 i~~ 62 (63)
T smart00504 60 IQE 62 (63)
T ss_pred HHh
Confidence 764
No 7
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=4.7e-10 Score=123.94 Aligned_cols=75 Identities=29% Similarity=0.544 Sum_probs=67.2
Q ss_pred HHHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhcc
Q 004418 136 VLDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKS 214 (754)
Q Consensus 136 ~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~ 214 (754)
.+..|+..+.|+||+++|..|++++|||+||..||..|+.. ...||+|+..+.. ..++.|..|.+||+.|+..+.
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~---~~Lr~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQE---SKLRSNWLVSEIVESFKNLRP 93 (397)
T ss_pred cccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCcccc---ccCccchHHHHHHHHHHHhhH
Confidence 34667889999999999999999999999999999999987 5689999999875 478999999999999987765
No 8
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.92 E-value=4.1e-10 Score=92.03 Aligned_cols=63 Identities=35% Similarity=0.787 Sum_probs=36.6
Q ss_pred HhhhhccccccccccccCcee-cCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCccc
Q 004418 510 EKLLKEFSCLICRQVMNLPIT-TPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVN 588 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~-lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N 588 (754)
+.|++.+.|++|.++|..||. ..|.|+||..|+...+. ..||+|+.+.. .++++.|
T Consensus 2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---------------------~~CPvC~~Paw--~qD~~~N 58 (65)
T PF14835_consen 2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---------------------SECPVCHTPAW--IQDIQIN 58 (65)
T ss_dssp HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---------------------TB-SSS--B-S---SS----
T ss_pred hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---------------------CCCCCcCChHH--HHHHHhh
Confidence 568889999999999999996 48999999999975432 25999999866 6899999
Q ss_pred HHHHHHH
Q 004418 589 RELMDVI 595 (754)
Q Consensus 589 ~~L~~lv 595 (754)
++|.+|+
T Consensus 59 rqLd~~i 65 (65)
T PF14835_consen 59 RQLDSMI 65 (65)
T ss_dssp HHHHHHH
T ss_pred hhhhccC
Confidence 9999875
No 9
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.90 E-value=1e-09 Score=89.71 Aligned_cols=63 Identities=32% Similarity=0.666 Sum_probs=37.6
Q ss_pred HhcccCCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHH
Q 004418 138 DLLDGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAI 206 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~li 206 (754)
..+++.+.|++|.++++.||.+ .|.|+||..|+...+.. .||+|+.+... ++++.|++|.+||
T Consensus 2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~---qD~~~NrqLd~~i 65 (65)
T PF14835_consen 2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWI---QDIQINRQLDSMI 65 (65)
T ss_dssp HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S----SS----HHHHHHH
T ss_pred hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHH---HHHHhhhhhhccC
Confidence 4567789999999999999975 99999999999886654 59999998875 6899999999986
No 10
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.90 E-value=1.3e-09 Score=89.92 Aligned_cols=61 Identities=21% Similarity=0.383 Sum_probs=54.9
Q ss_pred CCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHH
Q 004418 143 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIR 207 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie 207 (754)
++.|+||++.+.+||.++|||+||..||.+|+.. ...||.|+..+.. ..+..|..|.++|+
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~---~~l~~~~~l~~~i~ 61 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH---EDLIPNLALKSAIQ 61 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh---hhceeCHHHHHHHH
Confidence 4789999999999999999999999999999987 6789999999865 57888888888876
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.90 E-value=1.7e-09 Score=92.66 Aligned_cols=69 Identities=25% Similarity=0.328 Sum_probs=56.2
Q ss_pred hccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHHHHH
Q 004418 514 KEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNRELMD 593 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~L~~ 593 (754)
++|.|||+.++|.+||++++||+|++.||..|+... ...||.|+..+. ...+.+|..|.+
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~------------------~~~~P~t~~~l~--~~~l~pn~~Lk~ 62 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQN------------------GGTDPFTRQPLS--ESDLIPNRALKS 62 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT------------------SSB-TTT-SB-S--GGGSEE-HHHHH
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC------------------CCCCCCCCCcCC--cccceECHHHHH
Confidence 589999999999999999999999999999999862 248999999998 468999999999
Q ss_pred HHHHHHccc
Q 004418 594 VIESLKHKT 602 (754)
Q Consensus 594 lve~l~~~~ 602 (754)
.|+.|....
T Consensus 63 ~I~~~~~~~ 71 (73)
T PF04564_consen 63 AIEEWCAEN 71 (73)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 999998764
No 12
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.86 E-value=1.5e-09 Score=108.26 Aligned_cols=52 Identities=31% Similarity=0.817 Sum_probs=44.8
Q ss_pred hcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhcc---------------CCccccccccccCc
Q 004418 139 LLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQ---------------GKRTCAKCRHIIPP 190 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~---------------~~~~CP~CR~~~~~ 190 (754)
.+.+++.|+||++.+.+|++++|||.||+.||..|+.. ....||+||..+..
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 34467999999999999999999999999999999742 24589999999865
No 13
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.85 E-value=7.1e-10 Score=116.50 Aligned_cols=75 Identities=29% Similarity=0.664 Sum_probs=68.4
Q ss_pred HHHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhcc
Q 004418 136 VLDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKS 214 (754)
Q Consensus 136 ~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~ 214 (754)
.+..|..-|.|-||.++|..|+++||+|+||.-||..++.. +..||.|+..+.. ..++.|+.|.++|..|...+.
T Consensus 16 slk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~E---s~Lr~n~il~Eiv~S~~~~R~ 90 (442)
T KOG0287|consen 16 SLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTE---SDLRNNRILDEIVKSLNFARN 90 (442)
T ss_pred hhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccch---hhhhhhhHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999999988 7889999999987 578999999999999988776
No 14
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.85 E-value=2e-09 Score=107.30 Aligned_cols=65 Identities=28% Similarity=0.605 Sum_probs=47.8
Q ss_pred hhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 512 LLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+.+.+.|+||++.+.+|++++|||.||..||..|+.......++. ......+....||.||..+.
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~---~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRV---DQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhcccccccc---ccccccCCCCcCCCCCCcCC
Confidence 346899999999999999999999999999999976432111111 11112334678999999998
No 15
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.85 E-value=1.4e-09 Score=114.34 Aligned_cols=69 Identities=35% Similarity=0.778 Sum_probs=60.8
Q ss_pred HhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccH
Q 004418 510 EKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNR 589 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~ 589 (754)
..|...|.|.||.++|.-|+++||+|+||.-||..+++.+. .||.|+..+.. ..++-|+
T Consensus 18 k~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p-------------------~CP~C~~~~~E--s~Lr~n~ 76 (442)
T KOG0287|consen 18 KTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKP-------------------QCPTCCVTVTE--SDLRNNR 76 (442)
T ss_pred hhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCC-------------------CCCceecccch--hhhhhhh
Confidence 34556899999999999999999999999999999998765 79999999983 6788999
Q ss_pred HHHHHHHHHH
Q 004418 590 ELMDVIESLK 599 (754)
Q Consensus 590 ~L~~lve~l~ 599 (754)
.|.+||+.|.
T Consensus 77 il~Eiv~S~~ 86 (442)
T KOG0287|consen 77 ILDEIVKSLN 86 (442)
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 16
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.82 E-value=3.5e-09 Score=90.61 Aligned_cols=70 Identities=24% Similarity=0.336 Sum_probs=58.6
Q ss_pred cCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhcc
Q 004418 142 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKS 214 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~ 214 (754)
+.|.|+|+.++|.+||.+++||+|+..||..|+......||.|+..+.. ..+..|..|...|+.+.....
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~---~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE---SDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG---GGSEE-HHHHHHHHHHHHHCT
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc---ccceECHHHHHHHHHHHHHcc
Confidence 5789999999999999999999999999999999878899999999986 579999999999999987643
No 17
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.5e-09 Score=108.36 Aligned_cols=50 Identities=32% Similarity=0.969 Sum_probs=44.6
Q ss_pred ccCCcccccCCCCCCCeecCCCCcchhhhHHhhhcc--CCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQ--GKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~--~~~~CP~CR~~~~~ 190 (754)
...+.|.||++..++||.+.|||.|||.||.+|+.. ....||+|+..+..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 357899999999999999999999999999999884 35689999998865
No 18
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.3e-09 Score=110.29 Aligned_cols=99 Identities=23% Similarity=0.489 Sum_probs=82.0
Q ss_pred HHHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhccc
Q 004418 136 VLDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKSN 215 (754)
Q Consensus 136 ~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~~ 215 (754)
....+.+.+.|+||+++|..|++++|||+||..|+..++. ....||.||. ... .+..|..+.++++.++.....
T Consensus 6 ~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~----~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 6 LLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR----NLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred hhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh----ccCccHHHHHHHHHHHhcCCc
Confidence 3456778999999999999999999999999999999988 5789999995 322 677999999999999988653
Q ss_pred C--------CCCcccccccccCCCCCCcccchh
Q 004418 216 L--------AAVPTKVYHFMRNQDRPDKAFTTE 240 (754)
Q Consensus 216 ~--------~~~~~k~~~~~~~~drp~~c~~ce 240 (754)
. +..|.+...+||..+....|..|.
T Consensus 80 ~~~~~~~~~c~~~~~~~~~~c~~~~~~~c~~c~ 112 (386)
T KOG2177|consen 80 RPLGSKEELCEKHGEELKLFCEEDEKLLCVLCR 112 (386)
T ss_pred ccccccchhhhhcCCcceEEecccccccCCCCC
Confidence 2 234555578899999988888886
No 19
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=7.1e-09 Score=107.97 Aligned_cols=51 Identities=35% Similarity=0.986 Sum_probs=46.1
Q ss_pred hcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 139 LLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
..+...+|.+|++...+|..+||||.||+.||..|... ...||+||..+++
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQP 285 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCC
Confidence 34567999999999999999999999999999999987 6679999999876
No 20
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.65 E-value=1.3e-08 Score=76.33 Aligned_cols=31 Identities=42% Similarity=1.049 Sum_probs=28.0
Q ss_pred cccccccccCc-eecCCCChhhHHhHHHHHcC
Q 004418 518 CLICRQVMNLP-ITTPCAHNFCKSCLEGAFAG 548 (754)
Q Consensus 518 CpIC~~~~~~P-v~lpCgHsFC~~Cl~~~~~~ 548 (754)
|+||++.+.+| +.++|||+||..|+.+++..
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~ 32 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK 32 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC
Confidence 89999999999 67899999999999999875
No 21
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.64 E-value=1.2e-08 Score=76.44 Aligned_cols=38 Identities=39% Similarity=1.169 Sum_probs=33.6
Q ss_pred ccccCCCCCCC-eecCCCCcchhhhHHhhhccCCcccccc
Q 004418 146 CSFCMQLPERP-VTTPCGHNFCLKCFQKWIGQGKRTCAKC 184 (754)
Q Consensus 146 C~IC~~~~~~P-v~l~CgH~FC~~Ci~~~~~~~~~~CP~C 184 (754)
|+||++.+.+| +.++|||+||..|+.+|+.. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 7899987
No 22
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.2e-08 Score=97.47 Aligned_cols=46 Identities=33% Similarity=0.980 Sum_probs=41.5
Q ss_pred ccccccccccccC--ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNL--PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~--Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-+.||||++-+.. ||.+.|||.||..||...+..+. +||+|++.|+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~-------------------~CP~C~kkIt 178 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN-------------------KCPTCRKKIT 178 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhCC-------------------CCCCcccccc
Confidence 5899999999987 78899999999999999987664 8999999887
No 23
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.6e-08 Score=103.95 Aligned_cols=75 Identities=32% Similarity=0.714 Sum_probs=63.0
Q ss_pred HHHhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcc
Q 004418 508 VREKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQV 587 (754)
Q Consensus 508 ~~~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~ 587 (754)
....+.+++.|+||++.|..|++++|+|+||..|+..++. . .+.||.||. .. ..+..
T Consensus 6 ~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~-----------------~~~Cp~cr~-~~---~~~~~ 62 (386)
T KOG2177|consen 6 LLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--G-----------------PLSCPVCRP-PS---RNLRP 62 (386)
T ss_pred hhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcC--C-----------------CcCCcccCC-ch---hccCc
Confidence 4556778999999999999999999999999999998876 1 368999996 44 26779
Q ss_pred cHHHHHHHHHHHcccCCC
Q 004418 588 NRELMDVIESLKHKTEEN 605 (754)
Q Consensus 588 N~~L~~lve~l~~~~~~~ 605 (754)
|..+.++++.+.......
T Consensus 63 n~~l~~~~~~~~~~~~~~ 80 (386)
T KOG2177|consen 63 NVLLANLVERLRQLRLSR 80 (386)
T ss_pred cHHHHHHHHHHHhcCCcc
Confidence 999999999998775543
No 24
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.60 E-value=2.7e-08 Score=78.76 Aligned_cols=47 Identities=32% Similarity=0.733 Sum_probs=39.8
Q ss_pred hccccccccccccCceecCCCCh-hhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITTPCAHN-FCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCgHs-FC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
++..|+||++...+++++||||. ||..|+.+++... ..||.||..|.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-------------------~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRK-------------------KKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTT-------------------SBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccC-------------------CCCCcCChhhc
Confidence 36789999999999999999999 9999999998743 38999999876
No 25
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.60 E-value=2e-08 Score=79.43 Aligned_cols=46 Identities=35% Similarity=0.910 Sum_probs=40.7
Q ss_pred CCcccccCCCCCCCeecCCCCc-chhhhHHhhhccCCccccccccccC
Q 004418 143 SLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
+..|.||++.+.+++.++|||. ||..|+.+|+.. ...||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 5689999999999999999999 999999999885 789999999875
No 26
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.59 E-value=2.5e-08 Score=103.09 Aligned_cols=67 Identities=27% Similarity=0.579 Sum_probs=53.8
Q ss_pred hhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHH
Q 004418 511 KLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNRE 590 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~ 590 (754)
.|...+.|-||.+.|.-|+.++|||+||.-||.+++..+. .||+||.+... ..++-+..
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp-------------------~CP~Cr~~~~e--srlr~~s~ 79 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQP-------------------FCPVCREDPCE--SRLRGSSG 79 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCC-------------------CCccccccHHh--hhcccchh
Confidence 3445789999999999999999999999999999998775 79999998772 34555555
Q ss_pred HHHHHHHH
Q 004418 591 LMDVIESL 598 (754)
Q Consensus 591 L~~lve~l 598 (754)
+..+++.|
T Consensus 80 ~~ei~es~ 87 (391)
T COG5432 80 SREINESH 87 (391)
T ss_pred HHHHHHhh
Confidence 55555554
No 27
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.55 E-value=3.3e-08 Score=74.74 Aligned_cols=31 Identities=35% Similarity=0.975 Sum_probs=29.4
Q ss_pred cccccccccCce-ecCCCChhhHHhHHHHHcC
Q 004418 518 CLICRQVMNLPI-TTPCAHNFCKSCLEGAFAG 548 (754)
Q Consensus 518 CpIC~~~~~~Pv-~lpCgHsFC~~Cl~~~~~~ 548 (754)
|+||++.+.+|+ +++|||.||..||..++..
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~ 32 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN 32 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh
Confidence 899999999999 8999999999999999984
No 28
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.55 E-value=3.1e-08 Score=102.37 Aligned_cols=74 Identities=28% Similarity=0.496 Sum_probs=64.5
Q ss_pred HHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhcc
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKS 214 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~ 214 (754)
+..|..-+.|-||.++|..|+.++|||+||.-||..++.. +..||+||..+.. .-++-+..+..+++.+...+.
T Consensus 19 L~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~e---srlr~~s~~~ei~es~~~~r~ 92 (391)
T COG5432 19 LKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCE---SRLRGSSGSREINESHARNRD 92 (391)
T ss_pred hhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHh---hhcccchhHHHHHHhhhhccH
Confidence 4456677899999999999999999999999999999998 7889999999876 457888889999888877664
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.54 E-value=3e-08 Score=75.94 Aligned_cols=31 Identities=39% Similarity=1.025 Sum_probs=21.6
Q ss_pred cccccccccC----ceecCCCChhhHHhHHHHHcCC
Q 004418 518 CLICRQVMNL----PITTPCAHNFCKSCLEGAFAGK 549 (754)
Q Consensus 518 CpIC~~~~~~----Pv~lpCgHsFC~~Cl~~~~~~~ 549 (754)
||||.+ |.+ |+.|+|||+||..||.+++..+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 888 9999999999999999998744
No 30
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.5e-08 Score=99.38 Aligned_cols=50 Identities=34% Similarity=0.778 Sum_probs=45.0
Q ss_pred hccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
..|.|.||++...+||++.|||-||+.||-+|+..+. ....||+|+..|+
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~----------------~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRP----------------NSKECPVCKAEVS 95 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcC----------------CCeeCCccccccc
Confidence 3799999999999999999999999999999988653 3557999999988
No 31
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.52 E-value=2.6e-08 Score=76.61 Aligned_cols=40 Identities=35% Similarity=1.036 Sum_probs=34.6
Q ss_pred cccccCCCCC---CCeecCCCCcchhhhHHhhhccCCccccccc
Q 004418 145 NCSFCMQLPE---RPVTTPCGHNFCLKCFQKWIGQGKRTCAKCR 185 (754)
Q Consensus 145 ~C~IC~~~~~---~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR 185 (754)
.|+||++.+. .++.++|||.||..||.+|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999884 5667899999999999999998 67999997
No 32
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.49 E-value=6.3e-08 Score=73.18 Aligned_cols=39 Identities=44% Similarity=1.233 Sum_probs=36.1
Q ss_pred ccccCCCCCCCe-ecCCCCcchhhhHHhhhc-cCCcccccc
Q 004418 146 CSFCMQLPERPV-TTPCGHNFCLKCFQKWIG-QGKRTCAKC 184 (754)
Q Consensus 146 C~IC~~~~~~Pv-~l~CgH~FC~~Ci~~~~~-~~~~~CP~C 184 (754)
|+||++.+..|+ +++|||.||..|+.+|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 557789988
No 33
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.42 E-value=1.5e-07 Score=97.84 Aligned_cols=49 Identities=29% Similarity=0.783 Sum_probs=41.0
Q ss_pred ccCCcccccCCCCCCC--------eecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPERP--------VTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~P--------v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
..+..|+||++.+.++ +.++|+|.||..||.+|+.. ..+||+||..+..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEeeE
Confidence 3467999999987653 45689999999999999986 7799999998753
No 34
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-07 Score=98.75 Aligned_cols=48 Identities=31% Similarity=0.702 Sum_probs=43.8
Q ss_pred hhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 513 LKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 513 ~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+....|.||++...+|-.+||||.||..||..|..... .||.||..+.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-------------------eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-------------------ECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-------------------CCCcccccCC
Confidence 45689999999999999999999999999999998664 6999999877
No 35
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.40 E-value=8.3e-08 Score=73.82 Aligned_cols=33 Identities=27% Similarity=0.702 Sum_probs=28.7
Q ss_pred cccccccccc---CceecCCCChhhHHhHHHHHcCC
Q 004418 517 SCLICRQVMN---LPITTPCAHNFCKSCLEGAFAGK 549 (754)
Q Consensus 517 ~CpIC~~~~~---~Pv~lpCgHsFC~~Cl~~~~~~~ 549 (754)
.|+||++.|. .++.++|+|.||..||..|+...
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~ 37 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN 37 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC
Confidence 5999999995 35788999999999999999754
No 36
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.4e-07 Score=91.91 Aligned_cols=48 Identities=33% Similarity=0.911 Sum_probs=41.9
Q ss_pred cCCcccccCCCCCC--CeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 142 GSLNCSFCMQLPER--PVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~--Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
..+.|||||+.+.+ |+.+.|||.||..||...++. ...||+|++.|..
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccch
Confidence 45899999998874 567899999999999999887 7889999988765
No 37
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.36 E-value=2.3e-07 Score=96.40 Aligned_cols=48 Identities=31% Similarity=0.647 Sum_probs=39.8
Q ss_pred hhccccccccccccCc--------eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 513 LKEFSCLICRQVMNLP--------ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 513 ~e~l~CpIC~~~~~~P--------v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.++..|+||++.+.++ ++++|+|.||..||..|+.... .||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~-------------------tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN-------------------TCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC-------------------CCCCCCCEee
Confidence 3468999999987653 5568999999999999986443 7999999887
No 38
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.36 E-value=2.4e-07 Score=70.05 Aligned_cols=44 Identities=43% Similarity=1.075 Sum_probs=38.2
Q ss_pred cccccCCCCCCCeecC-CCCcchhhhHHhhhccCCcccccccccc
Q 004418 145 NCSFCMQLPERPVTTP-CGHNFCLKCFQKWIGQGKRTCAKCRHII 188 (754)
Q Consensus 145 ~C~IC~~~~~~Pv~l~-CgH~FC~~Ci~~~~~~~~~~CP~CR~~~ 188 (754)
.|+||++.+..++.+. |||.||..|+..|+......||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999998887765 9999999999999987677899998753
No 39
>PHA02926 zinc finger-like protein; Provisional
Probab=98.28 E-value=6e-07 Score=90.68 Aligned_cols=57 Identities=26% Similarity=0.551 Sum_probs=43.2
Q ss_pred HhhhhccccccccccccC---------ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 510 EKLLKEFSCLICRQVMNL---------PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~---------Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-...++..|+||++.+.. ++..+|+|+||..||..|..... .......||.||..+.
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~-------------~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR-------------ETGASDNCPICRTRFR 230 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc-------------ccCcCCcCCCCcceee
Confidence 344568999999998743 35669999999999999987432 1123557999999877
No 40
>PHA02926 zinc finger-like protein; Provisional
Probab=98.28 E-value=5e-07 Score=91.24 Aligned_cols=50 Identities=22% Similarity=0.691 Sum_probs=40.2
Q ss_pred cccCCcccccCCCCCC---------CeecCCCCcchhhhHHhhhccC-----CccccccccccC
Q 004418 140 LDGSLNCSFCMQLPER---------PVTTPCGHNFCLKCFQKWIGQG-----KRTCAKCRHIIP 189 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~---------Pv~l~CgH~FC~~Ci~~~~~~~-----~~~CP~CR~~~~ 189 (754)
...+..|+||++...+ ++..+|+|.||..||..|.... ...||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4568999999987632 3556999999999999998742 356999999875
No 41
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.25 E-value=3.5e-07 Score=70.05 Aligned_cols=36 Identities=36% Similarity=0.965 Sum_probs=22.7
Q ss_pred ccccCCCCCC----CeecCCCCcchhhhHHhhhccC---Ccccc
Q 004418 146 CSFCMQLPER----PVTTPCGHNFCLKCFQKWIGQG---KRTCA 182 (754)
Q Consensus 146 C~IC~~~~~~----Pv~l~CgH~FC~~Ci~~~~~~~---~~~CP 182 (754)
|+||.+ |.. |+.|+|||+||..||.+++..+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 887 9999999999999999998742 45676
No 42
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.24 E-value=8.3e-07 Score=67.10 Aligned_cols=44 Identities=34% Similarity=0.838 Sum_probs=36.4
Q ss_pred ccccccccccCceecC-CCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCc
Q 004418 517 SCLICRQVMNLPITTP-CAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDI 578 (754)
Q Consensus 517 ~CpIC~~~~~~Pv~lp-CgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v 578 (754)
.|+||++.+..++.++ |||.||..|+..++... ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~------------------~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG------------------KNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC------------------cCCCCCCCCcC
Confidence 5999999998887665 99999999999998742 34799998753
No 43
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.24 E-value=7.2e-07 Score=65.10 Aligned_cols=39 Identities=44% Similarity=1.261 Sum_probs=35.6
Q ss_pred ccccCCCCCCCeecCCCCcchhhhHHhhhccCCcccccc
Q 004418 146 CSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKC 184 (754)
Q Consensus 146 C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~C 184 (754)
|+||++....++.++|||.||..|+..|+......||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998556789987
No 44
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.20 E-value=1.1e-06 Score=67.69 Aligned_cols=41 Identities=34% Similarity=0.835 Sum_probs=33.7
Q ss_pred ccccccccc---cCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCC
Q 004418 517 SCLICRQVM---NLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPT 576 (754)
Q Consensus 517 ~CpIC~~~~---~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~ 576 (754)
.|+||++.+ ..|++++|||+||..|+..... ....||.||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~-------------------~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG-------------------KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC-------------------CCCCCcCCCC
Confidence 499999999 2478899999999999998761 1458999984
No 45
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.19 E-value=1.8e-06 Score=82.89 Aligned_cols=27 Identities=33% Similarity=0.866 Sum_probs=25.3
Q ss_pred cccccCCCCCCCccccCCcccCCCCCCC
Q 004418 36 PWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 36 ~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
.|||.||+ |||+.+|.|+|+||.|...
T Consensus 1 g~H~~CL~-Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLR-PPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCC-CCCCCCCCCCcCCCCCcCC
Confidence 59999999 9999999999999999854
No 46
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.16 E-value=1.3e-06 Score=67.39 Aligned_cols=41 Identities=39% Similarity=0.932 Sum_probs=34.9
Q ss_pred cccccCCCC---CCCeecCCCCcchhhhHHhhhccCCcccccccc
Q 004418 145 NCSFCMQLP---ERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRH 186 (754)
Q Consensus 145 ~C~IC~~~~---~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~ 186 (754)
.|+||.+.+ ..|+.++|||+||..|+.... .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999988 367788999999999999988 44679999974
No 47
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.12 E-value=2.5e-06 Score=62.15 Aligned_cols=30 Identities=37% Similarity=1.026 Sum_probs=28.5
Q ss_pred cccccccccCceecCCCChhhHHhHHHHHc
Q 004418 518 CLICRQVMNLPITTPCAHNFCKSCLEGAFA 547 (754)
Q Consensus 518 CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~ 547 (754)
|+||++....++.++|+|.||..|+..++.
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH
Confidence 899999999999999999999999999987
No 48
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.1e-06 Score=90.85 Aligned_cols=50 Identities=38% Similarity=0.934 Sum_probs=43.8
Q ss_pred ccCCcccccCCCCCCCeecCCCCcchhhhHHh-hhccCCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPERPVTTPCGHNFCLKCFQK-WIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~-~~~~~~~~CP~CR~~~~~ 190 (754)
..++.|.||++....|+.++|||.||+.||.. |-.+....||+||+.+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 46899999999999999999999999999999 766645569999998765
No 49
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.2e-06 Score=97.95 Aligned_cols=49 Identities=35% Similarity=0.858 Sum_probs=44.1
Q ss_pred CCcccccCCCCCCCeecCCCCcchhhhHHhhhccC----CccccccccccCcC
Q 004418 143 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQG----KRTCAKCRHIIPPK 191 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~----~~~CP~CR~~~~~~ 191 (754)
+..||||++...-|+.+.|||.||+.||..+|... ...||+|+..|..+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 89999999999999999999999999999998753 46899999998763
No 50
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.5e-07 Score=96.78 Aligned_cols=72 Identities=29% Similarity=0.641 Sum_probs=60.5
Q ss_pred HHhcccCCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHH
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAK 210 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k 210 (754)
+..+..++.|+||+++++..+++ .|+|.||..||...+..+...||.||+.+..+ +.++....+..||..+-
T Consensus 37 l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk--rsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK--RSLRIDPNFDALISKIY 109 (381)
T ss_pred HHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc--ccCCCCccHHHHHHHHh
Confidence 46678899999999999998887 79999999999999998889999999988654 56777777777765554
No 51
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.1e-06 Score=96.02 Aligned_cols=51 Identities=29% Similarity=0.750 Sum_probs=45.2
Q ss_pred ccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
...||||++...-|+.+.|||.||..||..+|+... .+....||.|+..|.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~--------------~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSA--------------IKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhc--------------ccCCccCCchhhhcc
Confidence 789999999999999999999999999999998652 344568999999988
No 52
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.3e-06 Score=93.36 Aligned_cols=69 Identities=22% Similarity=0.545 Sum_probs=51.1
Q ss_pred HhhhhccccccccccccCceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCccc
Q 004418 510 EKLLKEFSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVN 588 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N 588 (754)
..|..+|.|+||+++++..+++ .|+|.||..||...+... ...||.||+.+.. .+.++..
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~g------------------n~ecptcRk~l~S-krsLr~D 98 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSG------------------NNECPTCRKKLVS-KRSLRID 98 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc------------------CCCCchHHhhccc-cccCCCC
Confidence 3456789999999999999887 599999999999888654 3489999998872 2344444
Q ss_pred HHHHHHHHH
Q 004418 589 RELMDVIES 597 (754)
Q Consensus 589 ~~L~~lve~ 597 (754)
..+..|+..
T Consensus 99 p~fdaLis~ 107 (381)
T KOG0311|consen 99 PNFDALISK 107 (381)
T ss_pred ccHHHHHHH
Confidence 434444433
No 53
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3.5e-06 Score=98.41 Aligned_cols=57 Identities=32% Similarity=0.631 Sum_probs=51.8
Q ss_pred hHHHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcC
Q 004418 135 DVLDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPK 191 (754)
Q Consensus 135 ~~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~ 191 (754)
..+..+..-++||+|...+.+.|++.|||.||..|+.+....+.+.||.|...|...
T Consensus 635 EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 635 EELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred HHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 445667889999999999999999999999999999999998899999999999864
No 54
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.2e-06 Score=89.95 Aligned_cols=47 Identities=34% Similarity=0.709 Sum_probs=43.3
Q ss_pred CcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 144 LNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 144 l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
-.|+||+.....||.++|+|.||.-||........++|++||.+|..
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 36999999999999999999999999998877778899999999975
No 55
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.99 E-value=2e-06 Score=68.11 Aligned_cols=47 Identities=32% Similarity=0.831 Sum_probs=40.6
Q ss_pred ccccccCCCCCCCceecCCCCCcccccCCCCCCCc--cccCCcccCCCCC
Q 004418 14 QCMRCKVKPRPEETITCSTCVTPWHVACLTKPPET--LASSLSWLCPDCS 61 (754)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~--~~~~~~w~cp~cs 61 (754)
+|-+|+....+..+|.|++|..-||+.|+. ||+. ..+...|+||.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~-~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVG-PPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTST-SSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCC-CChhhccCCCCcEECcCCc
Confidence 588999988889999999999999999999 7777 3444599999984
No 56
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.96 E-value=2.7e-06 Score=97.94 Aligned_cols=50 Identities=28% Similarity=0.724 Sum_probs=47.2
Q ss_pred CcccccccCCCCCCCceecCCCCCc-ccccCCCCCCCccccCCcccCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCVTP-WHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~-~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
--.|-+|....+++.+|+|+.|+.. |||.||. |||.++|.+.|+|+.|+.
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLD-Pdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLD-PDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccC-cccccccccceecCcchh
Confidence 3469999999999999999999999 9999999 999999999999999985
No 57
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.95 E-value=3.9e-06 Score=89.34 Aligned_cols=70 Identities=30% Similarity=0.612 Sum_probs=58.0
Q ss_pred HhhhhccccccccccccCceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccc--cCCCc
Q 004418 510 EKLLKEFSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEF--LQNPQ 586 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~--~~~~~ 586 (754)
..+...++|.+|..+|.++.|+ -|.|+||+.||..++.... .||.|...+... ..++.
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~-------------------~CP~C~i~ih~t~pl~ni~ 70 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESK-------------------YCPTCDIVIHKTHPLLNIR 70 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhc-------------------cCCccceeccCccccccCC
Confidence 4456789999999999999876 6999999999999997543 799999988843 45677
Q ss_pred ccHHHHHHHHHH
Q 004418 587 VNRELMDVIESL 598 (754)
Q Consensus 587 ~N~~L~~lve~l 598 (754)
..+.|+.|+..|
T Consensus 71 ~DrtlqdiVyKL 82 (331)
T KOG2660|consen 71 SDRTLQDIVYKL 82 (331)
T ss_pred cchHHHHHHHHH
Confidence 778888888766
No 58
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.94 E-value=7.9e-06 Score=88.78 Aligned_cols=92 Identities=24% Similarity=0.556 Sum_probs=65.2
Q ss_pred hhhccccccccccccCceecCCCChhhHHhHHHHHcCCccccc----cc----------------------C--------
Q 004418 512 LLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRE----RS----------------------R-------- 557 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~----~~----------------------~-------- 557 (754)
+|++|.|+||..+|.+|++|||+|+.|+.|.........-+.. ++ +
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~tp~~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~~~~~~ 80 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGG 80 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhcccCCCCCCchhhhhcCCCCCccccccccceeeEeeccCCCCccCC
Confidence 5789999999999999999999999999999766543321000 00 0
Q ss_pred -------------CCcccc------------------CCCCcccCCCCCCCcc---cccCCCcccHHHHHHHHHHHcccC
Q 004418 558 -------------GGRTLR------------------SQKNVMQCPSCPTDIS---EFLQNPQVNRELMDVIESLKHKTE 603 (754)
Q Consensus 558 -------------~g~~~~------------------~~~~~~~CP~CR~~v~---~~~~~~~~N~~L~~lve~l~~~~~ 603 (754)
.|+.++ +....+.||.|...+- ..+..++.|+.|+.+|++|+....
T Consensus 81 ~a~~~~t~~~~~~~g~~~~p~am~pp~t~l~~~lap~~~~~~i~c~~c~rs~~~dd~~l~~~p~n~~le~vi~ryq~s~~ 160 (699)
T KOG4367|consen 81 FASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKA 160 (699)
T ss_pred eeecCCCccccCCCCceeCCCCCCCchhhccccccCCCCCceEEcchhhhheEecccccccCchhhHHHHHHHHHhhhhH
Confidence 222221 2233478999988653 456788999999999999976543
No 59
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.3e-06 Score=86.51 Aligned_cols=50 Identities=34% Similarity=0.840 Sum_probs=42.2
Q ss_pred hhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 513 LKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 513 ~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+..+.|+||++....|..++|||.||..||...|.... .-.||.||..+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k-----------------~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK-----------------YEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhc-----------------cccCchhhhhcc
Confidence 45899999999999999999999999999998544332 335999999876
No 60
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.89 E-value=4.6e-06 Score=88.83 Aligned_cols=72 Identities=22% Similarity=0.484 Sum_probs=60.9
Q ss_pred HHhcccCCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCccccccccccCcCc-cCCCCcchHHHHHHHHH
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKM-ASQPRINSALVTAIRMA 209 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~-~~~~~~n~~L~~lie~~ 209 (754)
+..+...++|.+|..+|.++.++ .|-|+||..||.+++.. ...||.|...++... ..+++....|+.++-++
T Consensus 9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 45567789999999999999887 89999999999999998 889999999997642 56778888888877544
No 61
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=9.8e-06 Score=90.14 Aligned_cols=74 Identities=28% Similarity=0.760 Sum_probs=56.0
Q ss_pred hhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccccc--CCCc-cc
Q 004418 512 LLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFL--QNPQ-VN 588 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~--~~~~-~N 588 (754)
+..+|.|.||..++..||++||||+||..||.+..+.. ..||.||..+..+. .... .|
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~-------------------~~cp~Cr~~l~e~~~~~~~~~~~ 141 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQE-------------------TECPLCRDELVELPALEQALSLN 141 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccC-------------------CCCcccccccccchHHHHHHHHH
Confidence 35689999999999999999999999999999876643 37999999887321 1112 36
Q ss_pred HHHHHHHHHHHcccCC
Q 004418 589 RELMDVIESLKHKTEE 604 (754)
Q Consensus 589 ~~L~~lve~l~~~~~~ 604 (754)
+.+..++..|......
T Consensus 142 r~~~~li~~F~~~~~~ 157 (398)
T KOG4159|consen 142 RLLCKLITKFLEGSSS 157 (398)
T ss_pred HHHHHHHHHhhhhhhc
Confidence 6666777777655444
No 62
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.78 E-value=1.5e-05 Score=68.32 Aligned_cols=40 Identities=43% Similarity=1.109 Sum_probs=32.3
Q ss_pred cccccCCCCCC------------Ce-ecCCCCcchhhhHHhhhccCCccccccc
Q 004418 145 NCSFCMQLPER------------PV-TTPCGHNFCLKCFQKWIGQGKRTCAKCR 185 (754)
Q Consensus 145 ~C~IC~~~~~~------------Pv-~l~CgH~FC~~Ci~~~~~~~~~~CP~CR 185 (754)
.|.||++.|.+ ++ ..+|||.|+..||.+|+.. ..+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 49999999832 33 3489999999999999987 56999997
No 63
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.78 E-value=7.9e-06 Score=84.28 Aligned_cols=47 Identities=28% Similarity=0.744 Sum_probs=43.9
Q ss_pred cccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCC
Q 004418 13 EQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDC 60 (754)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~c 60 (754)
--|-+|++..-++.+|.|+-|+..|||.||+ |||...|+|.|.|--|
T Consensus 282 k~csicgtsenddqllfcddcdrgyhmycls-ppm~eppegswsc~KO 328 (336)
T KOG1244|consen 282 KYCSICGTSENDDQLLFCDDCDRGYHMYCLS-PPMVEPPEGSWSCHLC 328 (336)
T ss_pred ceeccccCcCCCceeEeecccCCceeeEecC-CCcCCCCCCchhHHHH
Confidence 4688999988899999999999999999999 9999999999999776
No 64
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.71 E-value=2.9e-05 Score=83.25 Aligned_cols=48 Identities=23% Similarity=0.644 Sum_probs=38.7
Q ss_pred CCcccccCCC-CCCCe---ec-CCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 143 SLNCSFCMQL-PERPV---TT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 143 ~l~C~IC~~~-~~~Pv---~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
+..||+|+.. +..|- .+ +|||.||..|+...|..+...||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 4689999983 33443 22 7999999999999887777899999998876
No 66
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.70 E-value=4.8e-05 Score=81.58 Aligned_cols=48 Identities=27% Similarity=0.722 Sum_probs=37.1
Q ss_pred hcccccccccc-ccCce---e-cCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQV-MNLPI---T-TPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~-~~~Pv---~-lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
++..||||+.. +.+|- . .+|||+||..|+...|... ...||.|+..+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~------------------~~~CP~C~~~lr 54 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG------------------SGSCPECDTPLR 54 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC------------------CCCCCCCCCccc
Confidence 35789999983 44553 2 2799999999999998643 237999999887
No 67
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=3.2e-05 Score=86.12 Aligned_cols=73 Identities=30% Similarity=0.625 Sum_probs=56.1
Q ss_pred ccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCc-cCCC-CcchHHHHHHHHHHhhcc
Q 004418 141 DGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKM-ASQP-RINSALVTAIRMAKLSKS 214 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~-~~~~-~~n~~L~~lie~~k~~~~ 214 (754)
..++.|.||+..+..||+++|||+||..||.+.+.+ ...||.||..+.... .... ..|+.+..++..|.....
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~~ 156 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGSS 156 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 578999999999999999999999999999997775 778999999987421 1111 235556677776665544
No 68
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3.3e-05 Score=82.89 Aligned_cols=47 Identities=32% Similarity=0.919 Sum_probs=40.4
Q ss_pred ccCCcccccCCC-CCC------------CeecCCCCcchhhhHHhhhccCCcccccccccc
Q 004418 141 DGSLNCSFCMQL-PER------------PVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHII 188 (754)
Q Consensus 141 ~~~l~C~IC~~~-~~~------------Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~ 188 (754)
..+..|.||++- +.. |..+||||.|...|+..|.++ +.+||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 357799999987 433 477999999999999999997 78999999985
No 69
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.56 E-value=3.9e-05 Score=75.94 Aligned_cols=46 Identities=28% Similarity=0.737 Sum_probs=40.8
Q ss_pred ccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-|.|.||.+-|..||.+.|||+||..|..+.+.... .|-+|.....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~-------------------~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGD-------------------ECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCC-------------------cceecchhhc
Confidence 489999999999999999999999999988876554 7999988765
No 70
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.56 E-value=5.1e-05 Score=82.65 Aligned_cols=109 Identities=20% Similarity=0.304 Sum_probs=79.6
Q ss_pred cccCCcccccCCCCCCCeecCCCCcchhhhHHhhhcc-------------------------------------------
Q 004418 140 LDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQ------------------------------------------- 176 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~------------------------------------------- 176 (754)
++++|.|+||...|++|++|+|+|+.|..|....+.+
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~tp~~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~~~~~~ 80 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGG 80 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhcccCCCCCCchhhhhcCCCCCccccccccceeeEeeccCCCCccCC
Confidence 3678999999999999999999999999998654321
Q ss_pred ----------------------------------------CCcccccccccc--CcCccCCCCcchHHHHHHHHHHhhcc
Q 004418 177 ----------------------------------------GKRTCAKCRHII--PPKMASQPRINSALVTAIRMAKLSKS 214 (754)
Q Consensus 177 ----------------------------------------~~~~CP~CR~~~--~~~~~~~~~~n~~L~~lie~~k~~~~ 214 (754)
...+||.|...+ ..+.++.+..|..|.+.|+.|.+.+.
T Consensus 81 ~a~~~~t~~~~~~~g~~~~p~am~pp~t~l~~~lap~~~~~~i~c~~c~rs~~~dd~~l~~~p~n~~le~vi~ryq~s~~ 160 (699)
T KOG4367|consen 81 FASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKA 160 (699)
T ss_pred eeecCCCccccCCCCceeCCCCCCCchhhccccccCCCCCceEEcchhhhheEecccccccCchhhHHHHHHHHHhhhhH
Confidence 012689998764 34557889999999999999987765
Q ss_pred cC-----CCCcccccccccCCCCCCcccchhhhhhcCCc
Q 004418 215 NL-----AAVPTKVYHFMRNQDRPDKAFTTERAQKTGKA 248 (754)
Q Consensus 215 ~~-----~~~~~k~~~~~~~~drp~~c~~ceRA~k~gka 248 (754)
.+ +...++....||++-..-.|-.|.-+-..-++
T Consensus 161 aa~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rg 199 (699)
T KOG4367|consen 161 AALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRG 199 (699)
T ss_pred HhhhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCC
Confidence 42 34455666778877765566666444433333
No 71
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=6.7e-05 Score=79.02 Aligned_cols=47 Identities=32% Similarity=0.800 Sum_probs=40.9
Q ss_pred ccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.-.|+||+.....|+.++|+|-||.-||....... ...|++||.+|.
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd------------------k~~CavCR~pid 53 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKND------------------KKTCAVCRFPID 53 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcC------------------CCCCceecCCCC
Confidence 45799999999999999999999999999776533 346999999998
No 72
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=4.8e-05 Score=82.80 Aligned_cols=47 Identities=28% Similarity=0.770 Sum_probs=40.3
Q ss_pred CcccccCCCCCC---CeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 144 LNCSFCMQLPER---PVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 144 l~C~IC~~~~~~---Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
..|.||++.|.. -..|||.|.|+..||..|+.+....||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 489999999984 35689999999999999999855669999997754
No 73
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.41 E-value=6.8e-05 Score=74.25 Aligned_cols=47 Identities=30% Similarity=0.657 Sum_probs=42.0
Q ss_pred CCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 143 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.+.|.||...|..||.+.|||.||..|..+-.+. ...|-+|.+....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhcc
Confidence 5799999999999999999999999999887776 5689999887764
No 74
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.40 E-value=9.5e-05 Score=63.37 Aligned_cols=40 Identities=35% Similarity=0.853 Sum_probs=31.4
Q ss_pred ccccccccccC------------ce-ecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCC
Q 004418 517 SCLICRQVMNL------------PI-TTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCP 575 (754)
Q Consensus 517 ~CpIC~~~~~~------------Pv-~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR 575 (754)
.|.||++.|.+ ++ ..+|||.|...||.+|+.... .||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-------------------~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-------------------TCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-------------------B-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-------------------cCCCCC
Confidence 39999999933 33 348999999999999997653 899997
No 75
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.36 E-value=0.00024 Score=74.41 Aligned_cols=66 Identities=23% Similarity=0.590 Sum_probs=50.0
Q ss_pred cccccccccccCceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHHHHHH
Q 004418 516 FSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNRELMDV 594 (754)
Q Consensus 516 l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~L~~l 594 (754)
|.||.|..++.+|+-+ -|+|.||..||...+-.+ -|.||.|...-. .+..+.+......-
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds------------------Df~CpnC~rkdv-lld~l~pD~dk~~E 335 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS------------------DFKCPNCSRKDV-LLDGLTPDIDKKLE 335 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc------------------cccCCCcccccc-hhhccCccHHHHHH
Confidence 8999999999999988 589999999999887654 468999976311 13456666666656
Q ss_pred HHHHHc
Q 004418 595 IESLKH 600 (754)
Q Consensus 595 ve~l~~ 600 (754)
|+.+..
T Consensus 336 vE~~lk 341 (427)
T COG5222 336 VEKALK 341 (427)
T ss_pred HHHHHH
Confidence 666554
No 76
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.31 E-value=3.4e-05 Score=89.17 Aligned_cols=151 Identities=11% Similarity=0.004 Sum_probs=87.3
Q ss_pred cCCcccccCCCCCCCee---cCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcc-hHHHHHHHHHHhhcccCC
Q 004418 142 GSLNCSFCMQLPERPVT---TPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRIN-SALVTAIRMAKLSKSNLA 217 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~---l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n-~~L~~lie~~k~~~~~~~ 217 (754)
....|++|+..+.+-.. .+|+|.||..||..|.+. ..+||+||..|....+.....+ ..++.+-....+... ..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~-e~ 199 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEVKVLESTGIEANVRCLPSEESENIL-EK 199 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhheeeeeccccccceeEecchhhhhhhh-hh
Confidence 45689999987765432 489999999999999887 6799999998865322222222 111111111111100 11
Q ss_pred CCcccccccccCCCCCCcccchhhhhhcCCcccccCceee-cCCCCCCCCCCCCCCCCCCCcccccCcc-----------
Q 004418 218 AVPTKVYHFMRNQDRPDKAFTTERAQKTGKANAASGKIFV-TIPPDHFGPIPAENDPERNQGVLVGECW----------- 285 (754)
Q Consensus 218 ~~~~k~~~~~~~~drp~~c~~ceRA~k~gkana~sgri~~-~~~~~~~Gpip~~~~p~~~~Gv~vG~~~----------- 285 (754)
++..+...+.....+...|..|.+...+.-.-.|.++-++ +...+.-.+.. .|.+|.|+
T Consensus 200 ~~d~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~---------eiP~~eWYC~NC~dL~~~e 270 (1134)
T KOG0825|consen 200 GGDEKQDQISGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLS---------ESPVNEWYCTNCSLLEITE 270 (1134)
T ss_pred ccccccccccCcccccccceeeccCChHHhheeecccccceeeccccCcccc---------cccccceecCcchhhhhhh
Confidence 1222323344444566678888777777777777777666 43333222222 33455554
Q ss_pred ----chhhhhhhccCcCCCCCC
Q 004418 286 ----EDRLECRQWGAHFPHVAG 303 (754)
Q Consensus 286 ----~~r~~~~~~G~H~~~~~G 303 (754)
..+++.++.|+-.....|
T Consensus 271 h~~~~~~~~~~~~~~~~~~R~g 292 (1134)
T KOG0825|consen 271 HKDFTLKTEELIESPKLESREG 292 (1134)
T ss_pred hhHHHHHHHHHhhhhhhhhhcc
Confidence 456677677776666555
No 77
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=7.5e-05 Score=87.43 Aligned_cols=48 Identities=29% Similarity=0.799 Sum_probs=42.9
Q ss_pred ccCCcccccCCCCCC-----CeecCCCCcchhhhHHhhhccCCccccccccccC
Q 004418 141 DGSLNCSFCMQLPER-----PVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~-----Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
..+..|+||++.+.. |..++|+|.||..|+..|+++ ..+||+||..+-
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 357799999999998 788999999999999999998 889999999543
No 78
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=9e-05 Score=86.86 Aligned_cols=51 Identities=22% Similarity=0.705 Sum_probs=44.4
Q ss_pred hhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 511 KLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+..-+.||+|..-+.+-|++.|+|.||..|+...+... ..+||.|...|.
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR------------------qRKCP~Cn~aFg 689 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR------------------QRKCPKCNAAFG 689 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh------------------cCCCCCCCCCCC
Confidence 445679999999999999999999999999999888754 348999999887
No 79
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.27 E-value=0.00018 Score=62.96 Aligned_cols=48 Identities=29% Similarity=0.721 Sum_probs=37.2
Q ss_pred cCCcccccCCCCC------------CCeec-CCCCcchhhhHHhhhcc--CCccccccccccC
Q 004418 142 GSLNCSFCMQLPE------------RPVTT-PCGHNFCLKCFQKWIGQ--GKRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~~~~------------~Pv~l-~CgH~FC~~Ci~~~~~~--~~~~CP~CR~~~~ 189 (754)
++-.|.||...|. -|+.+ .|+|.|...||.+|+.. .+..||+||+.+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4556777777665 14433 89999999999999985 3579999999875
No 80
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=5.7e-05 Score=59.74 Aligned_cols=46 Identities=28% Similarity=0.628 Sum_probs=41.1
Q ss_pred CcccccCCCCCCCeecCCCCc-chhhhHHhhhccCCccccccccccC
Q 004418 144 LNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 144 l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
-.|.||.+...+.|...|||. .|..|..+.++.....||+||+++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 469999999999999999997 8999999988866789999999875
No 81
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00013 Score=76.81 Aligned_cols=50 Identities=34% Similarity=0.826 Sum_probs=42.2
Q ss_pred ccCCcccccCCCCCC---CeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPER---PVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.....|.|||..|.+ -+.|||.|.|...|+.+|+..-...||+||.++++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 345889999998873 35689999999999999998557789999998864
No 82
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.22 E-value=0.0001 Score=81.65 Aligned_cols=47 Identities=32% Similarity=0.791 Sum_probs=43.1
Q ss_pred cccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCC----cccCCCC
Q 004418 13 EQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSL----SWLCPDC 60 (754)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~----~w~cp~c 60 (754)
--|-|||.....--++.|+||..-|||.||+ ||||..|.. .|.|-.|
T Consensus 545 ysCgiCkks~dQHll~~CDtC~lhYHlGCL~-PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 545 YSCGICKKSTDQHLLTQCDTCHLHYHLGCLS-PPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred eeeeeeccchhhHHHhhcchhhceeeccccC-CccccCcccccCcceeeccc
Confidence 4588999988888889999999999999999 999999976 5999999
No 83
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0002 Score=75.30 Aligned_cols=47 Identities=32% Similarity=0.652 Sum_probs=42.2
Q ss_pred CCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 143 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.+.|-||..+|.+||.+.|+|.||..|..+.++. ...|++|.+.++.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG 287 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc
Confidence 4679999999999999999999999999988776 5689999888865
No 84
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00019 Score=75.59 Aligned_cols=46 Identities=30% Similarity=0.846 Sum_probs=40.8
Q ss_pred ccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-|.|-||...|.+||.+.|+|+||..|....+.... .|++|...+.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~-------------------~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGE-------------------KCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCC-------------------cceecccccc
Confidence 478999999999999999999999999987776543 7999998776
No 85
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00025 Score=83.07 Aligned_cols=47 Identities=34% Similarity=0.803 Sum_probs=41.8
Q ss_pred hccccccccccccC-----ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNL-----PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~-----Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
....|+||.+.+.. |..++|+|.||..|+..|+...+ .||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q-------------------tCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ-------------------TCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC-------------------cCCcchhhhh
Confidence 36889999999999 78999999999999999998654 8999999544
No 86
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.98 E-value=0.00031 Score=80.64 Aligned_cols=48 Identities=31% Similarity=0.794 Sum_probs=43.0
Q ss_pred ccccccCCCCCCCceecCCCCCcccccCCCCCC--CccccCCcccCCCCCC
Q 004418 14 QCMRCKVKPRPEETITCSTCVTPWHVACLTKPP--ETLASSLSWLCPDCSG 62 (754)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p--~~~~~~~~w~cp~cs~ 62 (754)
+|-.|.....--.+|.|++|-+.||+.||. || +...|.+.|+||.|.-
T Consensus 255 fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLe-PPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 255 FCSACNGSGLFNDIICCDGCPRSFHQTCLE-PPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHhCCccccccceeecCCchHHHHhhcC-CCCCcccCCCCccccCCCee
Confidence 799998866557889999999999999999 99 6778999999999985
No 87
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.98 E-value=0.00044 Score=56.41 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=25.9
Q ss_pred hccccccccccccCcee-cCCCChhhHHhHHHHHc
Q 004418 514 KEFSCLICRQVMNLPIT-TPCAHNFCKSCLEGAFA 547 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~-lpCgHsFC~~Cl~~~~~ 547 (754)
-.+.|||.+..|.+||. ..|+|+|.+..|..++.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~ 44 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQ 44 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCT
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHH
Confidence 36899999999999987 48999999999999984
No 88
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.81 E-value=0.00073 Score=55.12 Aligned_cols=42 Identities=33% Similarity=0.681 Sum_probs=30.4
Q ss_pred cCCcccccCCCCCCCeec-CCCCcchhhhHHhhhc-cCCccccc
Q 004418 142 GSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIG-QGKRTCAK 183 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~-~~~~~CP~ 183 (754)
-.+.|||.+..|.+||.. .|||+|....|..++. .+...||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 468999999999999985 9999999999999994 34678998
No 89
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00078 Score=70.32 Aligned_cols=49 Identities=20% Similarity=0.649 Sum_probs=41.8
Q ss_pred hccccccccccccCceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
...+||+|.+.-+.|.++ +|+|.||..|+...+... ..+.||.|...+.
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~-----------------asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD-----------------ASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcch-----------------hhcccCccCCCCc
Confidence 368899999999999776 599999999999877644 2789999998766
No 90
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.78 E-value=0.00028 Score=89.53 Aligned_cols=50 Identities=28% Similarity=0.852 Sum_probs=47.8
Q ss_pred CcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
.+.|-||+.+..+..+|+|+-|.+++|+-|++ |-++.++.++|+||.|.-
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~r-p~~~~~~~~dW~C~~c~~ 1157 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLR-PALSSVPPGDWMCPSCRK 1157 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhh-hhhccCCcCCccCCccch
Confidence 57899999999999999999999999999999 999999999999999974
No 91
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.77 E-value=0.0011 Score=74.46 Aligned_cols=50 Identities=36% Similarity=0.905 Sum_probs=46.0
Q ss_pred cccCCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 140 LDGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
+++++.|++|+..+.+|+.+ .|||.||..|+..|... ...||.|+..+..
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQ 68 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccch
Confidence 67889999999999999995 99999999999999998 8899999887764
No 92
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.65 E-value=0.0011 Score=74.48 Aligned_cols=49 Identities=33% Similarity=0.891 Sum_probs=42.8
Q ss_pred hhhccccccccccccCcee-cCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 512 LLKEFSCLICRQVMNLPIT-TPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~-lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+++.+.|+||..++.+|+. +.|||.||..|+..+.... ..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~-------------------~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNH-------------------QKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccC-------------------cCCcccccccc
Confidence 5678999999999999998 4999999999999887643 37999988776
No 93
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0012 Score=69.55 Aligned_cols=48 Identities=31% Similarity=0.661 Sum_probs=40.1
Q ss_pred hccccccccccccC---ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNL---PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~---Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
....|.||+.-|.. -+.|||.|.|-..|+..|+... ...||+||..+.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y------------------~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY------------------SNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhh------------------cccCCccCCCCC
Confidence 35889999988764 3678999999999999999854 348999999875
No 94
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.48 E-value=0.00073 Score=75.58 Aligned_cols=52 Identities=27% Similarity=0.687 Sum_probs=44.1
Q ss_pred hccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+..|.+|.+.-.+++...|.|.||+-|+..++..-. .....+||+|...++
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~--------------~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFM--------------ENNNVTCPVCHIGLS 586 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhh--------------cccCCCCcccccccc
Confidence 5688999999999999999999999999998887543 122469999998876
No 95
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.44 E-value=0.0025 Score=66.89 Aligned_cols=67 Identities=24% Similarity=0.465 Sum_probs=52.8
Q ss_pred CCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHh
Q 004418 143 SLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKL 211 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~ 211 (754)
.|.|+.|..++++|+.+ -|+|.||..||...+-..-+.||.|...-. ++..+........-|+.+.+
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdv--lld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDV--LLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccc--hhhccCccHHHHHHHHHHHH
Confidence 38999999999999998 689999999999877766789999965211 12466777777777777665
No 96
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0018 Score=69.90 Aligned_cols=47 Identities=28% Similarity=0.687 Sum_probs=39.5
Q ss_pred hccccccccccc-cC------------ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVM-NL------------PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~-~~------------Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+-.|.||++-+ .. |.-+||||.|-..|+..|...++ +||.||.++.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ-------------------TCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ-------------------TCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc-------------------CCCcccCccc
Confidence 467799999874 33 37889999999999999998765 8999999965
No 97
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.37 E-value=0.0038 Score=54.72 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=34.7
Q ss_pred cccccccccccC-ceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 516 FSCLICRQVMNL-PITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 516 l~CpIC~~~~~~-Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-.||.|...-.+ |+.+ .|+|.|-..||.+|++.+. ..-.||.||....
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~----------------~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS----------------SKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc----------------CCCCCCCcCCeee
Confidence 345556554444 6554 7999999999999998653 1347999999765
No 98
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.002 Score=70.43 Aligned_cols=46 Identities=28% Similarity=0.644 Sum_probs=39.1
Q ss_pred cccccccccccC---ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 516 FSCLICRQVMNL---PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 516 l~CpIC~~~~~~---Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+|.||++-|.. =+.|||.|.|-..||..|+... ...||+|+.++.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~------------------r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT------------------RTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc------------------CccCCCCCCcCC
Confidence 489999999986 3678999999999999998754 236999999776
No 99
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.31 E-value=0.0015 Score=72.35 Aligned_cols=49 Identities=27% Similarity=0.649 Sum_probs=41.0
Q ss_pred HhcccCCcccccCCCCCCCe----ecCCCCcchhhhHHhhhccCCccccccccccC
Q 004418 138 DLLDGSLNCSFCMQLPERPV----TTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
..+-+..+||||++.+..-+ ++.|.|+|...|+.+|+.. +||+||....
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 34557889999999988654 5699999999999999976 8999998654
No 100
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0028 Score=69.59 Aligned_cols=55 Identities=29% Similarity=0.596 Sum_probs=43.7
Q ss_pred hhccccccccccccCce-----e---cCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 513 LKEFSCLICRQVMNLPI-----T---TPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 513 ~e~l~CpIC~~~~~~Pv-----~---lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-.+..|.||++...... . .+|.|.||..||..|.....+ ..+.+..||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~------------~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF------------ESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc------------ccccccCCCcccCccc
Confidence 34889999999988866 3 469999999999999764431 2355779999999876
No 101
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.002 Score=70.73 Aligned_cols=50 Identities=28% Similarity=0.748 Sum_probs=40.3
Q ss_pred ccCCcccccCCCCCCCe-----e---cCCCCcchhhhHHhhhccC------CccccccccccCc
Q 004418 141 DGSLNCSFCMQLPERPV-----T---TPCGHNFCLKCFQKWIGQG------KRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~Pv-----~---l~CgH~FC~~Ci~~~~~~~------~~~CP~CR~~~~~ 190 (754)
..+..|-||++.....+ . .+|.|.||..||..|.... .+.||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34789999999888766 3 4799999999999998432 4799999987643
No 102
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0037 Score=65.44 Aligned_cols=49 Identities=24% Similarity=0.579 Sum_probs=41.5
Q ss_pred ccCCcccccCCCCCCCeec-CCCCcchhhhHHhhhcc-CCccccccccccC
Q 004418 141 DGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQ-GKRTCAKCRHIIP 189 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~-~~~~CP~CR~~~~ 189 (754)
....+|++|.+....|.++ +|||+||..|+...... ..++||.|.....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3578999999999999887 59999999999886553 3579999988776
No 103
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0031 Score=68.40 Aligned_cols=49 Identities=27% Similarity=0.642 Sum_probs=41.9
Q ss_pred ccCCcccccCCCCCCCeecCCCCc-chhhhHHhhhccCCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
+....|-||+.-.++-+.|||.|. .|..|.....-+ ...||+||.+|..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchHh
Confidence 346789999999999999999997 799999776544 6789999999865
No 104
>COG3440 Predicted restriction endonuclease [Defense mechanisms]
Probab=95.58 E-value=0.00028 Score=74.43 Aligned_cols=128 Identities=9% Similarity=-0.060 Sum_probs=110.0
Q ss_pred hhhhhccCcCCCCCCcccCCCCcceEEeccCCCccCCCCCcEEEEEecCCCCCCCCccCCccccccchhhhhHHHHHHHh
Q 004418 289 LECRQWGAHFPHVAGIAGQSNYGSQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFEKMNEALRVSC 368 (754)
Q Consensus 289 ~~~~~~G~H~~~~~GI~~~~~~Ga~Siv~sggy~dd~d~gd~~~YtG~gg~~~~~~~~~~~~~~~dQ~~~~~n~AL~~s~ 368 (754)
......+.|-|.+.++.|..-.++++++.+|+|+++.+.+.+..|++-|++...+ .+...+.+..++.+++..+
T Consensus 22 ~~~~~~a~~kp~l~l~v~~~~~~~~~~~n~~~~~~e~~~~f~~l~~~~g~~~~~~------~~~~p~~~l~~d~~~h~~~ 95 (301)
T COG3440 22 GGNREAAPHKPILLLDVGRKISTFFITENQGIYETELIEPFIQLWSFFGPKLQKY------GVDAPFELLQGDGKWHLDI 95 (301)
T ss_pred ccccccCCcCceeehhhHhhhhcccccccccccchhccchHHHHHhhcCcccccC------CCCCchHHhhccchhhhcc
Confidence 3667788999999999999999999999999999999999999999999863221 2556677788999999999
Q ss_pred hcCCcEEEEecccCCCCCCCCCCceEEceeeEEEEEEEeeCCcCceEEEEEEEEe
Q 004418 369 KKGYPVRVVRSHKEKRSSYAPEKGVRYDGVYRIEKCWRKIGIQGFKVCRYLFVRC 423 (754)
Q Consensus 369 ~~g~pVRViR~~~~~~s~~ap~~gyrYDGLY~V~~~w~~~g~~g~~v~~f~l~R~ 423 (754)
+.+.+-+++|++.. -+.+-|-.++-|-|+|.+-..|.+++..+++++.|+..+.
T Consensus 96 k~~~~~l~~~~~~~-~~e~v~~~~~d~el~~~~~~~~~~~~l~~~L~~~~~~~~~ 149 (301)
T COG3440 96 KEGFDGLSIRTLPT-EKEFVEYHYIDDELEQSLQYHQGEKRLIDDLISIWRKEVL 149 (301)
T ss_pred cccCCccccCCCcc-HhhhhhhhhccHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 99999999999874 3456666789999999999999999999999888888776
No 105
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.01 Score=64.13 Aligned_cols=67 Identities=30% Similarity=0.570 Sum_probs=55.0
Q ss_pred CCcccccCCCCC------CCeecCCCCcchhhhHHhhhccCCccccccccc--cCcCccCCCCcchHHHHHHHHH
Q 004418 143 SLNCSFCMQLPE------RPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHI--IPPKMASQPRINSALVTAIRMA 209 (754)
Q Consensus 143 ~l~C~IC~~~~~------~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~--~~~~~~~~~~~n~~L~~lie~~ 209 (754)
.+.|-||-+.|. .|..+.|||+||..|+.+.+......||.||.+ +....+..+..|..+..++..+
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 467999988776 477789999999999999988878899999998 4544567778888888877766
No 106
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.0048 Score=49.11 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=38.7
Q ss_pred cccccccccccCceecCCCCh-hhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 516 FSCLICRQVMNLPITTPCAHN-FCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 516 l~CpIC~~~~~~Pv~lpCgHs-FC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-.|.||++...+.|...|||- .|..|-.+.+... .-.||.||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~------------------~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL------------------HGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc------------------CCcCcchhhHHH
Confidence 579999999989888999995 7999998888743 237999999876
No 107
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.34 E-value=0.007 Score=65.97 Aligned_cols=47 Identities=30% Similarity=0.740 Sum_probs=40.4
Q ss_pred CcccccCCCCCCCeecCCCCcchhhhHHhhhccC-CccccccccccCc
Q 004418 144 LNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQG-KRTCAKCRHIIPP 190 (754)
Q Consensus 144 l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~-~~~CP~CR~~~~~ 190 (754)
-.|.||-+.-++-.+-||||..|..|+..|.... ...||.||..+..
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 3699999998887777999999999999998643 5799999998864
No 108
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.0074 Score=67.47 Aligned_cols=50 Identities=32% Similarity=0.782 Sum_probs=39.7
Q ss_pred ccCCcccccCCCCC-----------------CCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPE-----------------RPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~-----------------~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
+....|.|||.... +-+.+||.|.|...|+.+|....+..||+||.+++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34567999997553 123459999999999999999657799999998864
No 109
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.011 Score=64.14 Aligned_cols=47 Identities=26% Similarity=0.641 Sum_probs=39.6
Q ss_pred hccccccccccccCceecCCCCh-hhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITTPCAHN-FCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCgHs-FC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
..-.|-||+.-.++-++|||.|. .|..|.....-.+. .||+||..|.
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n-------------------~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTN-------------------NCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhc-------------------CCCccccchH
Confidence 36789999999999999999996 79999986653322 6999999887
No 110
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.19 E-value=0.007 Score=67.20 Aligned_cols=35 Identities=29% Similarity=0.543 Sum_probs=30.2
Q ss_pred hccccccccccccCce----ecCCCChhhHHhHHHHHcC
Q 004418 514 KEFSCLICRQVMNLPI----TTPCAHNFCKSCLEGAFAG 548 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv----~lpCgHsFC~~Cl~~~~~~ 548 (754)
+.-+||||++-|..-+ ++.|.|+|=..|+..|+..
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~ 212 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS 212 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcccC
Confidence 5678999999998864 6699999999999999764
No 111
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.022 Score=61.57 Aligned_cols=66 Identities=24% Similarity=0.525 Sum_probs=53.0
Q ss_pred ccccccccccccC------ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc---cccCCC
Q 004418 515 EFSCLICRQVMNL------PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS---EFLQNP 585 (754)
Q Consensus 515 ~l~CpIC~~~~~~------Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~---~~~~~~ 585 (754)
.+.|-||.+-|.. |..|.|||+||..|+....... ...||.||.... .....+
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~------------------~i~cpfcR~~~~~~~~~~~~l 64 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS------------------RILCPFCRETTEIPDGDVKSL 64 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCc------------------eeeccCCCCcccCCchhHhhh
Confidence 4789999988874 8888999999999999887654 456899999853 234568
Q ss_pred cccHHHHHHHHHH
Q 004418 586 QVNRELMDVIESL 598 (754)
Q Consensus 586 ~~N~~L~~lve~l 598 (754)
..|+.+..+++.+
T Consensus 65 ~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 65 QKNFALLQAIEHM 77 (296)
T ss_pred hhhHHHHHHHHHH
Confidence 8888888888887
No 112
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.09 E-value=0.0087 Score=50.91 Aligned_cols=48 Identities=27% Similarity=0.651 Sum_probs=23.8
Q ss_pred CCcccccCCCCC----CCeec----CCCCcchhhhHHhhhcc----C------CccccccccccCc
Q 004418 143 SLNCSFCMQLPE----RPVTT----PCGHNFCLKCFQKWIGQ----G------KRTCAKCRHIIPP 190 (754)
Q Consensus 143 ~l~C~IC~~~~~----~Pv~l----~CgH~FC~~Ci~~~~~~----~------~~~CP~CR~~~~~ 190 (754)
++.|.||..++. .|+.. .|++.|...||.+|+.. + ...||.|+.++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999998754 23332 79999999999999873 1 1379999998753
No 113
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.019 Score=59.94 Aligned_cols=48 Identities=27% Similarity=0.614 Sum_probs=38.2
Q ss_pred cCCcccccCCCCCC----------CeecCCCCcchhhhHHhhhccC-CccccccccccC
Q 004418 142 GSLNCSFCMQLPER----------PVTTPCGHNFCLKCFQKWIGQG-KRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~~~~~----------Pv~l~CgH~FC~~Ci~~~~~~~-~~~CP~CR~~~~ 189 (754)
++..|.||..-+.. -..|.|+|.|...||..|.--+ +.+||.|+..+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 45679999876653 3468999999999999996543 569999998774
No 114
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.70 E-value=0.018 Score=62.95 Aligned_cols=46 Identities=30% Similarity=0.642 Sum_probs=38.6
Q ss_pred ccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 517 SCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 517 ~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.|-||-+--++-.+-||||-.|..||..|..... .-.||.||..|.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~-----------------gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDE-----------------GQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCC-----------------CCCCCceeeEec
Confidence 4999999888888889999999999998864332 237999999987
No 115
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.69 E-value=0.011 Score=66.44 Aligned_cols=50 Identities=24% Similarity=0.729 Sum_probs=42.6
Q ss_pred ccCCcccccCCCCCCCeecCCCCcchhhhHHhhhc----cCCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG----QGKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~----~~~~~CP~CR~~~~~ 190 (754)
..+..|-+|.+.-.+++.+.|.|.||..|+..+.. ....+||.|-..+..
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 35688999999999999999999999999988865 235799999877654
No 116
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.02 Score=62.30 Aligned_cols=50 Identities=30% Similarity=0.593 Sum_probs=38.5
Q ss_pred HHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
...+.....|.||++-+.+.+.+||||..| |..-... ...||+||..+..
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIRL 348 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHHH
Confidence 344566788999999999999999999876 6544333 3459999988753
No 117
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.068 Score=59.11 Aligned_cols=60 Identities=28% Similarity=0.604 Sum_probs=42.1
Q ss_pred HHHHHhhhhccccccccccccCc---eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCC
Q 004418 506 TSVREKLLKEFSCLICRQVMNLP---ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPT 576 (754)
Q Consensus 506 ~~~~~~L~e~l~CpIC~~~~~~P---v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~ 576 (754)
.....-+...|.|.||.+...-- +.+||+|.||+.|+..++...- .+|. ...++||.+..
T Consensus 175 a~~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i------~eg~-----v~~l~Cp~~~C 237 (445)
T KOG1814|consen 175 ATLEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQI------QEGQ-----VSCLKCPDPKC 237 (445)
T ss_pred HHHHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhh------hcce-----eeeecCCCCCC
Confidence 34444445679999999987763 5679999999999999987542 2232 23567876554
No 118
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.018 Score=61.94 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=42.2
Q ss_pred cCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccC
Q 004418 142 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
++..|+||..-....|..||+|.-|..||.+++-+ .+.|-.|+..+.
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 56689999999999999999999999999999887 778999988765
No 119
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.0079 Score=63.33 Aligned_cols=42 Identities=36% Similarity=0.783 Sum_probs=35.9
Q ss_pred CCcccccCCCCCCCeecCCCCc-chhhhHHhhhccCCccccccccccC
Q 004418 143 SLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
...|.||++...+-+.|+|||. -|..|-.+ ...||+||+-+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHHH
Confidence 6789999999999999999997 68888765 448999998653
No 120
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.27 E-value=0.021 Score=68.32 Aligned_cols=50 Identities=28% Similarity=0.671 Sum_probs=42.0
Q ss_pred hhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 512 LLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
|...+.|+||.+ ...+++++|+|.||..|+...+.... ...||.||..+.
T Consensus 451 l~~~~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~-----------------~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 451 LSVSHWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE-----------------NAPCPLCRNVLK 500 (674)
T ss_pred Hhhccccccccc-cccceeecccchHHHHHHHhcccccc-----------------CCCCcHHHHHHH
Confidence 333389999999 88899999999999999999887664 237999999876
No 121
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.19 E-value=0.049 Score=59.05 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=61.9
Q ss_pred hcccCCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhcccCC
Q 004418 139 LLDGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKSNLA 217 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~~~~ 217 (754)
...+-+.||||.+.+..|+.= .=||.-|..|-.+. ...||.||.++.. ..++.|..+++..........
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~------~R~~amEkV~e~~~vpC~~~~ 113 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN------IRCRAMEKVAEAVLVPCKNAK 113 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc------HHHHHHHHHHHhceecccccc
Confidence 345678999999999988653 45899999998643 4579999999974 367788888877776666555
Q ss_pred CCcccccccccCCCC
Q 004418 218 AVPTKVYHFMRNQDR 232 (754)
Q Consensus 218 ~~~~k~~~~~~~~dr 232 (754)
-+..+.++|.....+
T Consensus 114 ~GC~~~~~Y~~~~~H 128 (299)
T KOG3002|consen 114 LGCTKSFPYGEKSKH 128 (299)
T ss_pred cCCceeecccccccc
Confidence 566676666655333
No 122
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.026 Score=65.01 Aligned_cols=37 Identities=22% Similarity=0.682 Sum_probs=31.0
Q ss_pred hhhccccccccccccC----ceecCCCChhhHHhHHHHHcC
Q 004418 512 LLKEFSCLICRQVMNL----PITTPCAHNFCKSCLEGAFAG 548 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~----Pv~lpCgHsFC~~Cl~~~~~~ 548 (754)
+.+-+.|+||...|.. ||.+.|||+.|..|++...+.
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~ 48 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA 48 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc
Confidence 4457889999887764 999999999999999987653
No 123
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=93.97 E-value=0.035 Score=68.66 Aligned_cols=53 Identities=23% Similarity=0.468 Sum_probs=47.0
Q ss_pred CCCcccccccCCCCC--CCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCCCC
Q 004418 10 NLDEQCMRCKVKPRP--EETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGVDG 65 (754)
Q Consensus 10 ~~~~~c~~c~~~~~~--~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~~~ 65 (754)
+-|++|-||+...-+ ..+|-|+.|..-.|+.|--.|| +|+++|+|-.|..++.
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~---ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPF---IPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccCCCC---CCCCcEeehhhccCcC
Confidence 669999999997766 8889999999999999999666 7899999999997654
No 124
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.032 Score=61.01 Aligned_cols=47 Identities=23% Similarity=0.682 Sum_probs=34.9
Q ss_pred CcccccCCCCCCC---eec-CCCCcchhhhHHhhhccC--CccccccccccCc
Q 004418 144 LNCSFCMQLPERP---VTT-PCGHNFCLKCFQKWIGQG--KRTCAKCRHIIPP 190 (754)
Q Consensus 144 l~C~IC~~~~~~P---v~l-~CgH~FC~~Ci~~~~~~~--~~~CP~CR~~~~~ 190 (754)
..|.||.+.+-.- -.+ .|||+|..-|+..|+... .+.||+|+-.++.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 4699996655422 123 599999999999999853 3689999955554
No 125
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=93.80 E-value=0.045 Score=47.07 Aligned_cols=29 Identities=28% Similarity=0.680 Sum_probs=26.8
Q ss_pred CCCCcchhhhHHhhhccCCccccccccccC
Q 004418 160 PCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 160 ~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
.|.|.|...||.+|+.. ...||++|+.+.
T Consensus 53 ~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 79999999999999998 789999999875
No 126
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=93.77 E-value=0.034 Score=64.56 Aligned_cols=53 Identities=28% Similarity=0.777 Sum_probs=47.9
Q ss_pred CCCCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 9 CNLDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 9 ~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
|-+--+|-.|....++--.|.|+.|+-.||-.|+. ||+..++.+.|+|+.|.-
T Consensus 65 C~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~-P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 65 CPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQK-PPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred cCCceeeeeccccCCcccccccccccccccccccC-CccccccCcccccHHHHh
Confidence 55566899999777888889999999999999999 999999999999999963
No 127
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=93.69 E-value=0.052 Score=42.93 Aligned_cols=41 Identities=27% Similarity=0.892 Sum_probs=32.3
Q ss_pred cccccCC--CCCCCeecCCC-----CcchhhhHHhhhccC-Cccccccc
Q 004418 145 NCSFCMQ--LPERPVTTPCG-----HNFCLKCFQKWIGQG-KRTCAKCR 185 (754)
Q Consensus 145 ~C~IC~~--~~~~Pv~l~Cg-----H~FC~~Ci~~~~~~~-~~~CP~CR 185 (754)
.|-||++ .-.++...||. |.|...|+.+|+... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 44567778985 789999999999753 56899994
No 128
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.53 E-value=0.03 Score=45.02 Aligned_cols=45 Identities=31% Similarity=0.700 Sum_probs=36.0
Q ss_pred hccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+..|-.|...-...+++||||..|..|+...-- --||.|..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rY---------------------ngCPfC~~~~~ 50 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERY---------------------NGCPFCGTPFE 50 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhhc---------------------cCCCCCCCccc
Confidence 4567778888888889999999999999864321 14999999887
No 129
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.47 E-value=0.037 Score=44.54 Aligned_cols=47 Identities=26% Similarity=0.542 Sum_probs=37.9
Q ss_pred ccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.....|-.|...-...+.++|||..|..|+.-+-. ..||+|..+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rY---ngCPfC~~~~~~ 51 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERY---NGCPFCGTPFEF 51 (55)
T ss_pred ccceeEEEccccccccccccccceeeccccChhhc---cCCCCCCCcccC
Confidence 34567888888888889999999999999865443 379999988853
No 130
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.46 E-value=0.023 Score=48.29 Aligned_cols=57 Identities=28% Similarity=0.503 Sum_probs=25.8
Q ss_pred cccccccccccc-C---ceec----CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMN-L---PITT----PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~-~---Pv~l----pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
++.|+||+..+. + |+.. .|++.|=..||..||......+ ..+ ......||.|+..|+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~------~~~--~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSR------QSF--IPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-------TT--T--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCC------eee--cccccCCcCCCCeee
Confidence 578999998765 2 4332 6888899999999997543111 001 112347999999886
No 131
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.28 E-value=0.062 Score=42.22 Aligned_cols=43 Identities=21% Similarity=0.619 Sum_probs=22.3
Q ss_pred ccccCCCCCC--Ceec--CCCCcchhhhHHhhhccCCcccccccccc
Q 004418 146 CSFCMQLPER--PVTT--PCGHNFCLKCFQKWIGQGKRTCAKCRHII 188 (754)
Q Consensus 146 C~IC~~~~~~--Pv~l--~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~ 188 (754)
|++|.+.+.. --.. +||+.+|..|...........||.||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7888877632 1222 78999999999998876678999999875
No 132
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.042 Score=60.55 Aligned_cols=49 Identities=29% Similarity=0.738 Sum_probs=39.2
Q ss_pred cCCcccccCCCCCCC-----eecCCCCcchhhhHHhhhccC-CccccccccccCc
Q 004418 142 GSLNCSFCMQLPERP-----VTTPCGHNFCLKCFQKWIGQG-KRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~P-----v~l~CgH~FC~~Ci~~~~~~~-~~~CP~CR~~~~~ 190 (754)
...+||||++-+.-| +.+.|||.|-..||.+|+.+. ...||.|...-..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 356899999988865 557999999999999999642 3589999765544
No 133
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.012 Score=61.95 Aligned_cols=42 Identities=26% Similarity=0.553 Sum_probs=34.6
Q ss_pred ccccccccccccCceecCCCCh-hhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLPITTPCAHN-FCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~lpCgHs-FC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
...|.||++...+-+.|+|||. -|..|-.+. -.||+||..|.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----------------------~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----------------------NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc-----------------------ccCchHHHHHH
Confidence 6779999999999999999994 588885432 27999999766
No 134
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.92 E-value=0.05 Score=57.17 Aligned_cols=48 Identities=23% Similarity=0.469 Sum_probs=43.3
Q ss_pred CCCCCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCC
Q 004418 8 PCNLDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCP 58 (754)
Q Consensus 8 ~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp 58 (754)
-|-.=..|.+|....-++|.|.|+.|+..+|.-|.- |-..|.|.|.|-
T Consensus 310 ~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG---L~~lP~G~WICD 357 (381)
T KOG1512|consen 310 KCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG---LQDLPRGEWICD 357 (381)
T ss_pred hhcccHhhhccCCcccchheeccccccCCCCccccc---cccccCccchhh
Confidence 465566899999999999999999999999999998 888999999996
No 135
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=92.83 E-value=0.037 Score=65.90 Aligned_cols=43 Identities=35% Similarity=0.865 Sum_probs=37.7
Q ss_pred ccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCC
Q 004418 14 QCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDC 60 (754)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~c 60 (754)
.|-+|+.. -++|.|++|-..||..||. ||++..|.++|.||.|
T Consensus 49 ~c~ic~~~---g~~l~c~tC~~s~h~~cl~-~pl~~~p~~~~~c~Rc 91 (696)
T KOG0383|consen 49 ACRICADG---GELLWCDTCPASFHASCLG-PPLTPQPNGEFICPRC 91 (696)
T ss_pred hhhhhcCC---CcEEEeccccHHHHHHccC-CCCCcCCccceeeeee
Confidence 46666543 3679999999999999999 9999999999999999
No 136
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.061 Score=58.12 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=39.4
Q ss_pred hccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
++-.||||+---.+.|+.||+|.-|..||.+++-+.. .|=.|...+.
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k-------------------~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCK-------------------RCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhcCC-------------------eeeEecceee
Confidence 5677999999888889999999999999998876443 6888877655
No 137
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.072 Score=58.77 Aligned_cols=48 Identities=29% Similarity=0.668 Sum_probs=39.8
Q ss_pred ccccccccccccCc-----eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLP-----ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~P-----v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
..+||||++-+.-| +++.|||-|=..||++|+.. +....||.|...-.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k-----------------~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK-----------------KTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh-----------------hhhhhCcccCChhH
Confidence 46899999999887 46789999999999999852 33678999987655
No 138
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.22 E-value=0.12 Score=56.09 Aligned_cols=59 Identities=27% Similarity=0.548 Sum_probs=45.7
Q ss_pred hhccccccccccccCcee-cCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHHH
Q 004418 513 LKEFSCLICRQVMNLPIT-TPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNREL 591 (754)
Q Consensus 513 ~e~l~CpIC~~~~~~Pv~-lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~L 591 (754)
.+-|.||||.+.+..|+. -+=||..|..|-... ...||.||..+.+ ..++.+
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----------------------~~~CP~Cr~~~g~-----~R~~am 98 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----------------------SNKCPTCRLPIGN-----IRCRAM 98 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhhh----------------------cccCCcccccccc-----HHHHHH
Confidence 357899999999999963 245899999997633 3379999999884 357777
Q ss_pred HHHHHHH
Q 004418 592 MDVIESL 598 (754)
Q Consensus 592 ~~lve~l 598 (754)
+.+++..
T Consensus 99 EkV~e~~ 105 (299)
T KOG3002|consen 99 EKVAEAV 105 (299)
T ss_pred HHHHHhc
Confidence 7777765
No 139
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.95 E-value=0.066 Score=64.13 Aligned_cols=51 Identities=29% Similarity=0.711 Sum_probs=39.5
Q ss_pred hhhccccccccccccC-----ce--ecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 512 LLKEFSCLICRQVMNL-----PI--TTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~-----Pv--~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
++-.-.|+||+.++.- |- .-.|.|-|-..|+-.||..+. .-.||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~-----------------~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA-----------------RSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC-----------------CCCCCccccccc
Confidence 3445679999998872 32 226999999999999998764 447999998765
No 140
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.94 E-value=0.072 Score=63.86 Aligned_cols=51 Identities=33% Similarity=0.762 Sum_probs=41.7
Q ss_pred hcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCC-ccccccccccCc
Q 004418 139 LLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGK-RTCAKCRHIIPP 190 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~-~~CP~CR~~~~~ 190 (754)
.+.....|.||++ ...++.+.|+|.||..|+...+.... ..||.||..+..
T Consensus 450 ~l~~~~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 450 DLSVSHWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred HHhhccccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 3433389999999 88899999999999999999887533 369999987753
No 141
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=0.11 Score=55.03 Aligned_cols=46 Identities=26% Similarity=0.681 Sum_probs=36.8
Q ss_pred cccccCC-CCCCCee----cCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 145 NCSFCMQ-LPERPVT----TPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 145 ~C~IC~~-~~~~Pv~----l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.||+|.. .+.+|-. -+|+|..|.+|+...+..+...||.|...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 5999975 3444422 29999999999999999889999999887754
No 142
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=0.091 Score=59.10 Aligned_cols=48 Identities=29% Similarity=0.700 Sum_probs=37.0
Q ss_pred hccccccccccccC-----------------ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCC
Q 004418 514 KEFSCLICRQVMNL-----------------PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPT 576 (754)
Q Consensus 514 e~l~CpIC~~~~~~-----------------Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~ 576 (754)
..--|+||+..+.- -+.+||.|.|-..||.+|++.- .+.||+||.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y------------------kl~CPvCR~ 631 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY------------------KLICPVCRC 631 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh------------------cccCCccCC
Confidence 46779999864431 2345999999999999999843 358999999
Q ss_pred Ccc
Q 004418 577 DIS 579 (754)
Q Consensus 577 ~v~ 579 (754)
++.
T Consensus 632 pLP 634 (636)
T KOG0828|consen 632 PLP 634 (636)
T ss_pred CCC
Confidence 865
No 143
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.79 E-value=0.11 Score=53.70 Aligned_cols=47 Identities=21% Similarity=0.448 Sum_probs=39.7
Q ss_pred hccccccccccccCc----eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLP----ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~P----v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+.+.||||.+.+++. +.-||||.||..|+.+.+... +.||+|..++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-------------------~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-------------------MVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-------------------ccccCCCCcCc
Confidence 479999999999984 344999999999999887644 37999999887
No 144
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.59 E-value=0.1 Score=61.68 Aligned_cols=57 Identities=33% Similarity=0.620 Sum_probs=47.3
Q ss_pred HHHHhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 507 SVREKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 507 ~~~~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.....+...+.|+||...+..|+.+.|-|.||..|+...|.... +...||+|+..+.
T Consensus 13 ~vi~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~----------------~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 13 QVINAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKK----------------GPKQCALCKSDIE 69 (684)
T ss_pred hHHHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccC----------------ccccchhhhhhhh
Confidence 34555667999999999999999999999999999988776542 2568999998776
No 145
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.55 E-value=0.054 Score=64.83 Aligned_cols=51 Identities=25% Similarity=0.774 Sum_probs=39.6
Q ss_pred hcccCCcccccCCCCC-----CCee--cCCCCcchhhhHHhhhcc-CCccccccccccC
Q 004418 139 LLDGSLNCSFCMQLPE-----RPVT--TPCGHNFCLKCFQKWIGQ-GKRTCAKCRHIIP 189 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~-----~Pv~--l~CgH~FC~~Ci~~~~~~-~~~~CP~CR~~~~ 189 (754)
++.....|+||..++. -|-. -.|.|-|...|+.+|++. +..+||+||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4556778999987665 2322 369999999999999985 4569999998775
No 146
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.14 Score=56.10 Aligned_cols=48 Identities=27% Similarity=0.585 Sum_probs=36.0
Q ss_pred cccccccccccCcee---c-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 516 FSCLICRQVMNLPIT---T-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 516 l~CpIC~~~~~~Pv~---l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
..|.||.+.+..-.- + .|||.|-..|+..||.... ....||.|+-.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P----------------s~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP----------------SNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC----------------ccCCCCceeeccc
Confidence 469999877765322 2 5999999999999998764 1137999995554
No 147
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.40 E-value=0.16 Score=39.97 Aligned_cols=43 Identities=19% Similarity=0.621 Sum_probs=20.5
Q ss_pred cccccccccCc--eec--CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCc
Q 004418 518 CLICRQVMNLP--ITT--PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDI 578 (754)
Q Consensus 518 CpIC~~~~~~P--v~l--pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v 578 (754)
||+|.+.+..- -++ +||+.+|..|+.+..... ...||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~------------------~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE------------------GGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-------------------SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc------------------CCCCCCCCCCC
Confidence 78898887321 222 699999999999887532 23799999864
No 148
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=91.31 E-value=0.22 Score=39.38 Aligned_cols=42 Identities=26% Similarity=0.604 Sum_probs=32.4
Q ss_pred ccccccc--cccCceecCCC-----ChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCC
Q 004418 517 SCLICRQ--VMNLPITTPCA-----HNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCP 575 (754)
Q Consensus 517 ~CpIC~~--~~~~Pv~lpCg-----HsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR 575 (754)
.|-||++ .-.+|++.||. |.|=..||.+|+..+. ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~-----------------~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG-----------------NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC-----------------CCcCCCCC
Confidence 4889997 33457888985 7788999999997653 34799984
No 149
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.16 E-value=0.29 Score=47.86 Aligned_cols=20 Identities=20% Similarity=0.567 Sum_probs=17.1
Q ss_pred hccccccccccccCceecCC
Q 004418 514 KEFSCLICRQVMNLPITTPC 533 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpC 533 (754)
++.+||||++.-.+.|.|-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46789999999999998843
No 150
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=0.16 Score=54.02 Aligned_cols=45 Identities=29% Similarity=0.724 Sum_probs=35.4
Q ss_pred cccccc-ccccCce----ecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 517 SCLICR-QVMNLPI----TTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 517 ~CpIC~-~~~~~Pv----~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.||+|. +.+.+|- +-+|+|+.|.+|+...|... ...||.|-..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g------------------~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG------------------PAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC------------------CCCCCcccchhh
Confidence 599998 4666662 22999999999999999755 347999988766
No 151
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.88 E-value=0.086 Score=45.06 Aligned_cols=45 Identities=27% Similarity=0.703 Sum_probs=33.8
Q ss_pred cccccCCCCC------------CCeec-CCCCcchhhhHHhhhcc--CCccccccccccC
Q 004418 145 NCSFCMQLPE------------RPVTT-PCGHNFCLKCFQKWIGQ--GKRTCAKCRHIIP 189 (754)
Q Consensus 145 ~C~IC~~~~~------------~Pv~l-~CgH~FC~~Ci~~~~~~--~~~~CP~CR~~~~ 189 (754)
+|-||.-.|. -|..+ -|.|.|...||.+|+.. .+..||+||..+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 6666665554 24444 69999999999999874 3568999998774
No 152
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=90.15 E-value=0.15 Score=54.90 Aligned_cols=38 Identities=24% Similarity=0.650 Sum_probs=31.5
Q ss_pred CCCCCceecCC--CC-CcccccCCCCCCCccccCCcccCCCCCC
Q 004418 22 PRPEETITCST--CV-TPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 22 ~~~~~~l~c~~--c~-~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
..--++..|+. |. -=||++|.. |+..|.+.|+||.|..
T Consensus 227 vsyg~Mi~CDn~~C~~eWFH~~CVG---L~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 227 VSYGKMIGCDNPGCPIEWFHFTCVG---LKTKPKGKWYCPRCKA 267 (274)
T ss_pred cccccccccCCCCCCcceEEEeccc---cccCCCCcccchhhhh
Confidence 34457888988 87 446999999 8999999999999974
No 153
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.02 E-value=0.085 Score=55.25 Aligned_cols=48 Identities=23% Similarity=0.650 Sum_probs=37.0
Q ss_pred ccccccccccccCce----------ecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLPI----------TTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv----------~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+-.|.||..-+..-+ .|.|+|.|-..||..|.--.. .-+||.|...+.
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK-----------------kqtCPYCKekVd 281 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK-----------------KQTCPYCKEKVD 281 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC-----------------CCCCchHHHHhh
Confidence 455888887665433 679999999999999975332 348999999887
No 154
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=90.01 E-value=0.14 Score=60.48 Aligned_cols=74 Identities=22% Similarity=0.491 Sum_probs=54.9
Q ss_pred HHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhcc--CCccccccccccCcCccCCCCcchHHHHHHHHHHhhc
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQ--GKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSK 213 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~--~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~ 213 (754)
...+...+.|+||...+..|+.+.|-|.||..|+...+.. ....||+|+..+..+ ..+-......++..+...+
T Consensus 15 i~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~---s~~Es~r~sq~vqe~lk~k 90 (684)
T KOG4362|consen 15 INAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR---SLRESPRFSQLSKESLKTK 90 (684)
T ss_pred HHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh---hccccchHHHHHHHhcCCc
Confidence 3455678899999999999999999999999999876553 356899999888763 3333445555555444433
No 155
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=0.24 Score=54.79 Aligned_cols=52 Identities=21% Similarity=0.503 Sum_probs=41.3
Q ss_pred hhhccccccccccccC---ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 512 LLKEFSCLICRQVMNL---PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~---Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+...|.|||=.+--++ |+.+.|||..|+.=|.+..++.. ..|+||.|.....
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~----------------~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGS----------------QSFKCPYCPVEQL 385 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCC----------------eeeeCCCCCcccC
Confidence 4457999998776664 89999999999999988866542 2689999987654
No 156
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.85 E-value=0.12 Score=56.49 Aligned_cols=44 Identities=27% Similarity=0.662 Sum_probs=34.1
Q ss_pred hccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
....|.||.+-..+.+.+||||.-| |..-... ...||+||..+.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--------------------l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--------------------LPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhh--------------------CCCCchhHHHHH
Confidence 3467999999999999999999876 6543321 335999999776
No 157
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=89.71 E-value=0.12 Score=58.65 Aligned_cols=50 Identities=26% Similarity=0.652 Sum_probs=38.6
Q ss_pred CcccccccC-CCCC-CCceecCCCCCcccccCCCCCCCcc----ccCCcccCCCCCC
Q 004418 12 DEQCMRCKV-KPRP-EETITCSTCVTPWHVACLTKPPETL----ASSLSWLCPDCSG 62 (754)
Q Consensus 12 ~~~c~~c~~-~~~~-~~~l~c~~c~~~~h~~cl~~~p~~~----~~~~~w~cp~cs~ 62 (754)
+-.|-||.. .+++ .-+|.|..|.++||.-|.. |+-+- -+..+|+|-.|..
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chq-p~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQ-PLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhcc-CCCCHhhccCccceEeehhhcc
Confidence 456999986 4444 5679999999999999998 76442 2345999999985
No 158
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.53 E-value=0.11 Score=56.97 Aligned_cols=46 Identities=33% Similarity=0.854 Sum_probs=36.7
Q ss_pred cCCcccccCCCCC-CC---eecCCCCcchhhhHHhhhcc-CCccccccccc
Q 004418 142 GSLNCSFCMQLPE-RP---VTTPCGHNFCLKCFQKWIGQ-GKRTCAKCRHI 187 (754)
Q Consensus 142 ~~l~C~IC~~~~~-~P---v~l~CgH~FC~~Ci~~~~~~-~~~~CP~CR~~ 187 (754)
-++.|-.|.+.+- +| -.+||.|+|...|+..++.+ +.++||.||+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3689999998764 22 23699999999999998764 56899999953
No 159
>PHA03096 p28-like protein; Provisional
Probab=89.38 E-value=0.44 Score=51.44 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=36.5
Q ss_pred CCCchhhHHHHHHHHHHhhHHHHHhhhhccccccccccccC-c-------eecCCCChhhHHhHHHHHcCC
Q 004418 487 TGKPEDGKKVRRAIRQAQNTSVREKLLKEFSCLICRQVMNL-P-------ITTPCAHNFCKSCLEGAFAGK 549 (754)
Q Consensus 487 ~~~~e~~~~ir~~~~~~~~~~~~~~L~e~l~CpIC~~~~~~-P-------v~lpCgHsFC~~Cl~~~~~~~ 549 (754)
+.+++++....+..-..+.+. ...-.|.||++.... + +.-.|.|.||..|+..|....
T Consensus 155 p~d~eqr~~h~k~c~~~~~~~-----~~~k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~ 220 (284)
T PHA03096 155 PTDIKQRYNEQKTCLSYQLRL-----LLSKICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTES 220 (284)
T ss_pred CcCHHHHHHHHHHHHHHHHHH-----HHHhhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhh
Confidence 455666655544432222111 112679999987664 2 222799999999999987754
No 160
>PF04641 Rtf2: Rtf2 RING-finger
Probab=89.31 E-value=0.37 Score=51.39 Aligned_cols=46 Identities=22% Similarity=0.506 Sum_probs=36.7
Q ss_pred hccccccccccccC--c-e-ecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNL--P-I-TTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~--P-v-~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
..|.|||....|.. + | +.+|||.|+..+|...- . ...||+|..++.
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~-------------------~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K-------------------SKKCPVCGKPFT 161 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c-------------------cccccccCCccc
Confidence 57999999999964 2 3 33999999999999773 1 125999999988
No 161
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.17 E-value=0.25 Score=51.20 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=41.0
Q ss_pred cCCcccccCCCCCCCee----cCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 142 GSLNCSFCMQLPERPVT----TPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~----l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
..+.||||.+.+.+.+. -+|||.||..|+.+.+.. -..||+|..++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcc
Confidence 46899999999987543 399999999999998876 6789999998876
No 162
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=0.12 Score=59.71 Aligned_cols=43 Identities=30% Similarity=0.669 Sum_probs=34.6
Q ss_pred hcccCCcccccCCCCC----CCeecCCCCcchhhhHHhhhccCCccccccc
Q 004418 139 LLDGSLNCSFCMQLPE----RPVTTPCGHNFCLKCFQKWIGQGKRTCAKCR 185 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~----~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR 185 (754)
.+.+-+.|+||+..|. .||.+-|||+.|..|+...... .|| |.
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~ 53 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TK 53 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CC
Confidence 3455688999987775 7999999999999999886654 688 54
No 163
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.00 E-value=0.23 Score=53.63 Aligned_cols=51 Identities=25% Similarity=0.548 Sum_probs=40.3
Q ss_pred hhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 512 LLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
=+++..|.||-.-++---.+||+|..|..|..+...- -....||.||....
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRAL-----------------Y~~K~C~~CrTE~e 108 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRAL-----------------YMQKGCPLCRTETE 108 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHH-----------------HhccCCCccccccc
Confidence 3567889999999998888999999999998765331 12457999998654
No 164
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=88.86 E-value=0.43 Score=41.24 Aligned_cols=45 Identities=24% Similarity=0.438 Sum_probs=35.3
Q ss_pred cccccccccccC----ceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 516 FSCLICRQVMNL----PITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 516 l~CpIC~~~~~~----Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-.|+-|+.-+.. |+.. -|.|.|=..||.+|++... .||.+|....
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~-------------------~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG-------------------VCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC-------------------CCCCCCceeE
Confidence 457888875543 5555 6999999999999998764 7999998765
No 165
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.40 E-value=0.21 Score=51.89 Aligned_cols=43 Identities=30% Similarity=0.831 Sum_probs=30.5
Q ss_pred CcccccCCCCC-CCee-cCCCCcchhhhHHhhhccCCccccccccccC
Q 004418 144 LNCSFCMQLPE-RPVT-TPCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 144 l~C~IC~~~~~-~Pv~-l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
..|..|..... +|.. |.|+|+||..|...... ..||+|+..+.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc---cccccccceee
Confidence 35777765443 3433 59999999999865433 28999999864
No 166
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=88.11 E-value=0.21 Score=58.81 Aligned_cols=51 Identities=25% Similarity=0.521 Sum_probs=44.4
Q ss_pred CCCcccccccCCCC--CCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCC
Q 004418 10 NLDEQCMRCKVKPR--PEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 10 ~~~~~c~~c~~~~~--~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
|.|-+|-||+.... ..++.-|+.|.+--|+.|-- +..+|.+.|.|--|.--
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG---Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG---ILEVPEGPWLCRTCALG 321 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhc---eeecCCCCeeehhcccc
Confidence 36889999999653 47889999999999999998 78899999999999853
No 167
>PF04641 Rtf2: Rtf2 RING-finger
Probab=87.96 E-value=0.68 Score=49.39 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=39.2
Q ss_pred cccCCcccccCCCCCC---Ceec-CCCCcchhhhHHhhhccCCccccccccccCcC
Q 004418 140 LDGSLNCSFCMQLPER---PVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPK 191 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~---Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~ 191 (754)
-...+.|||....|.. -|.| +|||.|+..+|...- ....||+|..+|...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccC
Confidence 3467899999988853 2334 999999999998874 245799999999753
No 168
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.53 E-value=0.64 Score=44.12 Aligned_cols=50 Identities=22% Similarity=0.512 Sum_probs=42.4
Q ss_pred hccccccccccccCceec----CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITT----PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~l----pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.-++|.||.+...+...| =||-+.|..|-...|.... .-..||+|++.+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~----------------~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN----------------LYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc----------------cCCCCCccccccc
Confidence 568899999999999887 3999999999999998653 2347999999876
No 169
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=85.93 E-value=0.61 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.786 Sum_probs=18.1
Q ss_pred cCCcccccCCCCCCCeecCCC
Q 004418 142 GSLNCSFCMQLPERPVTTPCG 162 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l~Cg 162 (754)
++.+|||||+...+.|.|-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467899999999999998664
No 170
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.81 E-value=0.37 Score=43.58 Aligned_cols=28 Identities=21% Similarity=0.730 Sum_probs=25.0
Q ss_pred CCCCcchhhhHHhhhccCCcccccccccc
Q 004418 160 PCGHNFCLKCFQKWIGQGKRTCAKCRHII 188 (754)
Q Consensus 160 ~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~ 188 (754)
.|.|.|...||.+|+++ ...||+|.+.-
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcce
Confidence 69999999999999998 67899998754
No 171
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.74 E-value=0.28 Score=51.03 Aligned_cols=43 Identities=33% Similarity=0.753 Sum_probs=30.4
Q ss_pred ccccccccccc-Cce-ecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 516 FSCLICRQVMN-LPI-TTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 516 l~CpIC~~~~~-~Pv-~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
..|..|...-. +|. +|.|+|.||..|..... .-.||.|+..+.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---------------------~~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---------------------PDVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC---------------------ccccccccceee
Confidence 45777776444 343 56899999999976321 117999999876
No 172
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=85.53 E-value=0.86 Score=41.19 Aligned_cols=33 Identities=30% Similarity=0.662 Sum_probs=26.9
Q ss_pred hcccCCcccccCCCCCCCee--cCCCCcchhhhHH
Q 004418 139 LLDGSLNCSFCMQLPERPVT--TPCGHNFCLKCFQ 171 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~~Pv~--l~CgH~FC~~Ci~ 171 (754)
.+.+.-.|++|...+...+. .||||.|+..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 34567789999998887655 3999999999975
No 173
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=85.49 E-value=0.31 Score=50.87 Aligned_cols=33 Identities=21% Similarity=0.776 Sum_probs=25.0
Q ss_pred CceecCCCCC--c-ccccCCCCCCCccccCCcccCCCCC
Q 004418 26 ETITCSTCVT--P-WHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 26 ~~l~c~~c~~--~-~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
++.-|+.=++ - |||+|.. |...|.|-|+||+|-
T Consensus 233 qMVaCDn~nCkrEWFH~~CVG---Lk~pPKG~WYC~eCk 268 (271)
T COG5034 233 QMVACDNANCKREWFHLECVG---LKEPPKGKWYCPECK 268 (271)
T ss_pred cceecCCCCCchhheeccccc---cCCCCCCcEeCHHhH
Confidence 4555654333 3 5999998 788899999999994
No 174
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.83 E-value=0.41 Score=53.20 Aligned_cols=47 Identities=19% Similarity=0.585 Sum_probs=35.2
Q ss_pred cccCCcccccCCCCCC---CeecCCCCcchhhhHHhhhcc-------CCcccccccc
Q 004418 140 LDGSLNCSFCMQLPER---PVTTPCGHNFCLKCFQKWIGQ-------GKRTCAKCRH 186 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Ci~~~~~~-------~~~~CP~CR~ 186 (754)
....+.|.||++...- -+.+||+|.||..|+..++.. ....||.+..
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3467899999987764 356799999999999988652 2346776654
No 175
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.79 E-value=0.49 Score=51.21 Aligned_cols=47 Identities=26% Similarity=0.669 Sum_probs=37.9
Q ss_pred cCCcccccCCCCCCCeecCCCCcchhhhHHhhhc-cCCcccccccccc
Q 004418 142 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG-QGKRTCAKCRHII 188 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~-~~~~~CP~CR~~~ 188 (754)
+...|-||-.-+.--..+||+|..|..|..+.-. ...+.|++||...
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 4668999999888777889999999999876532 1367999999754
No 176
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=84.50 E-value=0.41 Score=49.48 Aligned_cols=47 Identities=32% Similarity=0.827 Sum_probs=35.7
Q ss_pred cccccccc-ccccCc-e-ec--C-CCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCC--CCCCCcc
Q 004418 515 EFSCLICR-QVMNLP-I-TT--P-CAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCP--SCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~-~~~~~P-v-~l--p-CgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP--~CR~~v~ 579 (754)
+-.||||. +.+-+| + ++ | |-|..|.+|+.+.|... ...|| .|.+-+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~G------------------pAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRG------------------PAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCC------------------CCCCCCccHHHHHH
Confidence 56899998 466667 2 22 5 99999999999999855 34698 8877655
No 177
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.45 E-value=0.38 Score=41.24 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=34.0
Q ss_pred cccccccccccC-ceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 516 FSCLICRQVMNL-PITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 516 l~CpIC~~~~~~-Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-.||-|.-.=.+ |+++ -|.|.|=..||.+|.+... +.-.||.||....
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~t----------------sq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPT----------------SQGQCPMCRQTWQ 81 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCcc----------------ccccCCcchheeE
Confidence 345555443333 6665 5999999999999988653 2347999998764
No 178
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.26 E-value=1.5 Score=45.02 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=38.2
Q ss_pred cCCcccccCCCCC--CCeecCCCCcchhhhHHhhhcc-------CCccccccccccC
Q 004418 142 GSLNCSFCMQLPE--RPVTTPCGHNFCLKCFQKWIGQ-------GKRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~~~~--~Pv~l~CgH~FC~~Ci~~~~~~-------~~~~CP~CR~~~~ 189 (754)
-.-.|.+|...+. +.+.|.|-|.|.+.|+..|..+ .-..||.|...|-
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 3568999998877 5566799999999999998764 2348999987764
No 179
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=84.05 E-value=0.46 Score=51.34 Aligned_cols=46 Identities=17% Similarity=0.440 Sum_probs=38.7
Q ss_pred cCCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCcccccccccc
Q 004418 142 GSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHII 188 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~ 188 (754)
+.-.|+||+..-.+|..+ --|..||..|+..++.+ ...||+-..+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcc
Confidence 456899999999999877 45999999999999986 78899865544
No 180
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=84.03 E-value=0.6 Score=37.65 Aligned_cols=32 Identities=25% Similarity=0.693 Sum_probs=27.8
Q ss_pred CcccccccCCC-CCCCceecCCCCCcccccCCC
Q 004418 12 DEQCMRCKVKP-RPEETITCSTCVTPWHVACLT 43 (754)
Q Consensus 12 ~~~c~~c~~~~-~~~~~l~c~~c~~~~h~~cl~ 43 (754)
..+|.+|+..- +.++.+-|..|-+|+|-.|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 46899998855 578899999999999999975
No 181
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.44 E-value=0.7 Score=51.27 Aligned_cols=49 Identities=16% Similarity=0.382 Sum_probs=39.9
Q ss_pred hcccCCcccccCCCCC---CCeecCCCCcchhhhHHhhhccCC--ccccccccc
Q 004418 139 LLDGSLNCSFCMQLPE---RPVTTPCGHNFCLKCFQKWIGQGK--RTCAKCRHI 187 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Ci~~~~~~~~--~~CP~CR~~ 187 (754)
.++.-+.|||=.+--. .|+.+.|||..|..-+.+..+++. +.||.|-..
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 4667899998665433 588999999999999999988776 899999543
No 182
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=82.20 E-value=0.96 Score=35.93 Aligned_cols=45 Identities=27% Similarity=0.497 Sum_probs=22.8
Q ss_pred CCcccccCCCCCCCeec-CCCCcchhhh---HHhhhccCCccccccccc
Q 004418 143 SLNCSFCMQLPERPVTT-PCGHNFCLKC---FQKWIGQGKRTCAKCRHI 187 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l-~CgH~FC~~C---i~~~~~~~~~~CP~CR~~ 187 (754)
.|.|||....+..|+.. .|.|.-|.+= |..........||+|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 37899999999999875 8999977653 222222446789999763
No 183
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.94 E-value=0.96 Score=51.01 Aligned_cols=52 Identities=27% Similarity=0.610 Sum_probs=35.3
Q ss_pred ccccccccccccCc-e---ecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCC--CCCCCcc
Q 004418 515 EFSCLICRQVMNLP-I---TTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCP--SCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~P-v---~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP--~CR~~v~ 579 (754)
..+|.||..-...+ . +..|+|.||..|+.+++.... -......|| .|...++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~-------------~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKL-------------LSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhh-------------ccCCCccCCCCCCCccCC
Confidence 57899999333332 2 457999999999999987442 113356787 5666655
No 184
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=81.06 E-value=1.2 Score=48.22 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=30.4
Q ss_pred ccccccccccccCceec-CCCChhhHHhHHHHHcCCc
Q 004418 515 EFSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKT 550 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~ 550 (754)
.-.||||+.-..+|..+ --|-.||..|+-.++....
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~ 336 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYG 336 (357)
T ss_pred cccChhHHhccCCCceEEecceEEeHHHHHHHHHhcC
Confidence 45699999999999666 4599999999999988554
No 185
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=80.04 E-value=0.85 Score=47.21 Aligned_cols=47 Identities=26% Similarity=0.689 Sum_probs=36.9
Q ss_pred CCcccccCC-CCCCCe--ec--C-CCCcchhhhHHhhhccCCcccc--ccccccC
Q 004418 143 SLNCSFCMQ-LPERPV--TT--P-CGHNFCLKCFQKWIGQGKRTCA--KCRHIIP 189 (754)
Q Consensus 143 ~l~C~IC~~-~~~~Pv--~l--~-CgH~FC~~Ci~~~~~~~~~~CP--~CR~~~~ 189 (754)
+..||||.. .+-+|- .+ | |-|..|.+|+.+.+..++..|| -|.+.+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 558999975 344552 22 4 9999999999999999899999 8877654
No 186
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=79.79 E-value=0.79 Score=51.79 Aligned_cols=50 Identities=22% Similarity=0.575 Sum_probs=41.0
Q ss_pred CCcccccccCCCC--CCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCC
Q 004418 11 LDEQCMRCKVKPR--PEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 11 ~~~~c~~c~~~~~--~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
-|++|.+|-.... .....-|+.|++--|-.|-- . -.+|+|.|+|-.|--.
T Consensus 192 ~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG-I--~f~peG~WlCrkCi~~ 243 (669)
T COG5141 192 FDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG-I--QFLPEGFWLCRKCIYG 243 (669)
T ss_pred hhhhhHhccccccCCcceEEEecCcchhhhhhccc-c--eecCcchhhhhhhccc
Confidence 4789999977443 35558999999999999999 3 4688999999999853
No 187
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=79.17 E-value=0.82 Score=48.99 Aligned_cols=43 Identities=26% Similarity=0.558 Sum_probs=28.7
Q ss_pred CcccccCCCCC-CCeecCCCCcchhhhHHhhhccCCccccccccccC
Q 004418 144 LNCSFCMQLPE-RPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 144 l~C~IC~~~~~-~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
-.|--|---+. --.+++|.|.||+.|....- -+.||.|-..+.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~---dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSDS---DKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcCc---cccCcCcccHHH
Confidence 35666643222 22357999999999986532 458999976653
No 188
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=77.77 E-value=1.3 Score=47.95 Aligned_cols=47 Identities=23% Similarity=0.646 Sum_probs=33.8
Q ss_pred ccccccccccccCc----eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLP----ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~P----v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+-.||+|.+.+.-- .-.+||-..|+-|.......- .-.||.||....
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~l------------------ngrcpacrr~y~ 64 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNL------------------NGRCPACRRKYD 64 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhc------------------cCCChHhhhhcc
Confidence 33499999977632 224799999999987665432 236999999877
No 189
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=77.71 E-value=1.5 Score=41.70 Aligned_cols=49 Identities=16% Similarity=0.449 Sum_probs=41.3
Q ss_pred cCCcccccCCCCCCCeec----CCCCcchhhhHHhhhcc--CCccccccccccCc
Q 004418 142 GSLNCSFCMQLPERPVTT----PCGHNFCLKCFQKWIGQ--GKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l----~CgH~FC~~Ci~~~~~~--~~~~CP~CR~~~~~ 190 (754)
.-.+|.||.+...+...| -||...|..|-...|+. ....||+|+..|..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 457899999999988877 39999999999998874 24689999998865
No 190
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=76.93 E-value=1.6 Score=46.91 Aligned_cols=52 Identities=21% Similarity=0.459 Sum_probs=39.9
Q ss_pred hhhhccccccccccccC---ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCc
Q 004418 511 KLLKEFSCLICRQVMNL---PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDI 578 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~---Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v 578 (754)
.+..-|.||+=.+.-++ |+++.|||..-..-+...-+.+. ..|+||.|....
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~----------------~~FKCPYCP~~~ 386 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGV----------------LSFKCPYCPEMS 386 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCc----------------EEeeCCCCCcch
Confidence 34567999998887775 89999999999888876644332 378999997643
No 191
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.80 E-value=2.3 Score=51.42 Aligned_cols=43 Identities=28% Similarity=0.773 Sum_probs=34.7
Q ss_pred ccccccccccccCce-ecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLPI-TTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv-~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.-.|..|.-.+.-|+ ..-|||+|-+.|+. .. ...||.|+....
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~-------------------~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DK-------------------EDKCPKCLPELR 883 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc---cC-------------------cccCCccchhhh
Confidence 457999999999995 57999999999998 11 348999987433
No 192
>PHA03096 p28-like protein; Provisional
Probab=76.27 E-value=1.3 Score=47.90 Aligned_cols=43 Identities=21% Similarity=0.477 Sum_probs=30.2
Q ss_pred CcccccCCCCCC-C-------eecCCCCcchhhhHHhhhcc--CCcccccccc
Q 004418 144 LNCSFCMQLPER-P-------VTTPCGHNFCLKCFQKWIGQ--GKRTCAKCRH 186 (754)
Q Consensus 144 l~C~IC~~~~~~-P-------v~l~CgH~FC~~Ci~~~~~~--~~~~CP~CR~ 186 (754)
-.|.||++.... + +...|-|.||..|+..|... ...+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 579999986542 2 22389999999999999763 2345666654
No 193
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=75.64 E-value=1.7 Score=47.18 Aligned_cols=46 Identities=22% Similarity=0.601 Sum_probs=34.3
Q ss_pred cccccCCCCCC--Cee--cCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 145 NCSFCMQLPER--PVT--TPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 145 ~C~IC~~~~~~--Pv~--l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.||+|++.+.. --+ -+||...|.-|.......-...||.||..+..
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 49999987652 222 37899889999876555446789999998865
No 194
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=75.64 E-value=1.5 Score=55.00 Aligned_cols=53 Identities=25% Similarity=0.499 Sum_probs=42.5
Q ss_pred HHhhhhccccccccccccC-ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccc
Q 004418 509 REKLLKEFSCLICRQVMNL-PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISE 580 (754)
Q Consensus 509 ~~~L~e~l~CpIC~~~~~~-Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~ 580 (754)
+..+-..+.|+||.+++.+ -.++.|||.||..|+..|...+. .||.|......
T Consensus 1147 ~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s-------------------~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1147 LMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASS-------------------RCPICKSIKGD 1200 (1394)
T ss_pred HHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhc-------------------cCcchhhhhhh
Confidence 4445567899999999994 56779999999999999887654 79999865553
No 195
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.92 E-value=2.4 Score=51.27 Aligned_cols=41 Identities=27% Similarity=0.664 Sum_probs=34.2
Q ss_pred CCcccccCCCCCCCe-ecCCCCcchhhhHHhhhccCCccccccccc
Q 004418 143 SLNCSFCMQLPERPV-TTPCGHNFCLKCFQKWIGQGKRTCAKCRHI 187 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv-~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~ 187 (754)
.-.|+.|...+.-|+ ...|||.|...|+. .+...||.|+..
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccchh
Confidence 368999999999885 56999999999998 235689999763
No 196
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.25 E-value=2.6 Score=48.53 Aligned_cols=36 Identities=31% Similarity=0.679 Sum_probs=31.1
Q ss_pred hccccccccccccC-ceecCCCChhhHHhHHHHHcCC
Q 004418 514 KEFSCLICRQVMNL-PITTPCAHNFCKSCLEGAFAGK 549 (754)
Q Consensus 514 e~l~CpIC~~~~~~-Pv~lpCgHsFC~~Cl~~~~~~~ 549 (754)
...+|.||.+.+.. .+.+.|||.||..|...++...
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhhe
Confidence 36899999999986 6667999999999999988755
No 197
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=73.92 E-value=1 Score=56.56 Aligned_cols=53 Identities=26% Similarity=0.690 Sum_probs=44.4
Q ss_pred hHHHhcccCCcccccCCCCC-CCeecCCCCcchhhhHHhhhccCCcccccccccc
Q 004418 135 DVLDLLDGSLNCSFCMQLPE-RPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHII 188 (754)
Q Consensus 135 ~~~~~l~~~l~C~IC~~~~~-~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~ 188 (754)
-.+..+.....|.||++.+. .-....|||.+|..|...|+.. ...||.|....
T Consensus 1145 ~y~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1145 RYLMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSIK 1198 (1394)
T ss_pred HHHHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhhh
Confidence 34556677889999999999 5566799999999999999998 77899998554
No 198
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=73.39 E-value=1.7 Score=46.64 Aligned_cols=43 Identities=26% Similarity=0.653 Sum_probs=28.7
Q ss_pred cccccccccccC-ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 516 FSCLICRQVMNL-PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 516 l~CpIC~~~~~~-Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-.|--|...+.- =.++||.|.||..|.... ..+.||.|-..|.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---------------------~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD---------------------SDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcC---------------------ccccCcCcccHHH
Confidence 346666543332 246799999999997522 1346999987776
No 199
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=73.33 E-value=0.76 Score=49.06 Aligned_cols=49 Identities=22% Similarity=0.583 Sum_probs=36.7
Q ss_pred cCCcccccCCCCC-CC--eecCCCCcchhhhHHhhhcc----------------------CCccccccccccCc
Q 004418 142 GSLNCSFCMQLPE-RP--VTTPCGHNFCLKCFQKWIGQ----------------------GKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~-~P--v~l~CgH~FC~~Ci~~~~~~----------------------~~~~CP~CR~~~~~ 190 (754)
....|.||+--|. .| +.++|-|.|...|+.+++.. -...||+||..+..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 4678999998776 34 34699999999999887641 12369999987753
No 200
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=73.07 E-value=1.6 Score=48.13 Aligned_cols=49 Identities=29% Similarity=0.665 Sum_probs=37.6
Q ss_pred hccccccccccccC-c---eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNL-P---ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~-P---v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-+|.|..|.+.+-- | -.|||.|.|-..|+..++.... ...||.||+..+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~-----------------~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG-----------------TRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC-----------------CCCCccHHHHHh
Confidence 36889999997753 3 3479999999999999986443 448999995433
No 201
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=72.89 E-value=2 Score=33.66 Aligned_cols=43 Identities=26% Similarity=0.718 Sum_probs=24.9
Q ss_pred cccccCCCCCCCeecCCC-CcchhhhHHhhhccCCccccccccccCc
Q 004418 145 NCSFCMQLPERPVTTPCG-HNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 145 ~C~IC~~~~~~Pv~l~Cg-H~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.|.-|.- .+--.+.|. |..|..|+...+.. ...||+|..+++.
T Consensus 4 nCKsCWf--~~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWF--ANKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S----SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred cChhhhh--cCCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 4555543 333456786 78899999988877 7789999998875
No 202
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.77 E-value=2 Score=44.39 Aligned_cols=40 Identities=28% Similarity=0.605 Sum_probs=32.2
Q ss_pred ccccCCCCCCCeecCCCCc-chhhhHHhhhccCCccccccccccCc
Q 004418 146 CSFCMQLPERPVTTPCGHN-FCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 146 C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
|-+|...-..-+.+||.|. +|..|-.. ...||+|+.+...
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 9999998888777899986 89999653 4579999887653
No 203
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=69.75 E-value=1.6 Score=39.43 Aligned_cols=32 Identities=22% Similarity=0.654 Sum_probs=26.2
Q ss_pred hhhccccccccccccCce--ecCCCChhhHHhHH
Q 004418 512 LLKEFSCLICRQVMNLPI--TTPCAHNFCKSCLE 543 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv--~lpCgHsFC~~Cl~ 543 (754)
+.+.-.|++|...+...+ ..||||.|...|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 456777999999998764 45999999999975
No 204
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=68.96 E-value=3.8 Score=51.83 Aligned_cols=63 Identities=22% Similarity=0.455 Sum_probs=42.2
Q ss_pred cCCcccccCCC-CC-CC-eecCCCCcchhhhHHhhhcc---------CCccccccccccCcCccCCCCcchHHHHHHHHH
Q 004418 142 GSLNCSFCMQL-PE-RP-VTTPCGHNFCLKCFQKWIGQ---------GKRTCAKCRHIIPPKMASQPRINSALVTAIRMA 209 (754)
Q Consensus 142 ~~l~C~IC~~~-~~-~P-v~l~CgH~FC~~Ci~~~~~~---------~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~ 209 (754)
.+-.|-||+.- +. .| +.|.|+|.|...|..+.+.+ +-..||+|...+.- ..|..|++-+
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH---------~~LkDLldPi 3555 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH---------IVLKDLLDPI 3555 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh---------HHHHHHHHHH
Confidence 45679999752 22 33 56899999999999776553 22489999776643 3455666655
Q ss_pred Hhhc
Q 004418 210 KLSK 213 (754)
Q Consensus 210 k~~~ 213 (754)
+...
T Consensus 3556 Kel~ 3559 (3738)
T KOG1428|consen 3556 KELY 3559 (3738)
T ss_pred HHHH
Confidence 5544
No 205
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=68.36 E-value=5.4 Score=30.65 Aligned_cols=33 Identities=15% Similarity=0.560 Sum_probs=20.1
Q ss_pred cccccccccCceecC---CCChhhHHhHHHHHcCCc
Q 004418 518 CLICRQVMNLPITTP---CAHNFCKSCLEGAFAGKT 550 (754)
Q Consensus 518 CpIC~~~~~~Pv~lp---CgHsFC~~Cl~~~~~~~~ 550 (754)
|.+|.+++..-+.-+ |+=.+=..|+..+|....
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~ 36 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS 36 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC
Confidence 678999988876654 887788889999987653
No 206
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=67.77 E-value=2 Score=34.12 Aligned_cols=47 Identities=23% Similarity=0.593 Sum_probs=22.6
Q ss_pred ccccccccccccCcee-cCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCC
Q 004418 515 EFSCLICRQVMNLPIT-TPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPT 576 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~-lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~ 576 (754)
.|.|||....+..|+- ..|.|.-|-+ +..++.... ....+.||.|.+
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~--------------~~~~W~CPiC~~ 49 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQ--------------RTPKWKCPICNK 49 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHH--------------HS---B-TTT--
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhh--------------ccCCeECcCCcC
Confidence 4789999999999975 5899987643 222332211 122478999975
No 207
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=67.75 E-value=2.8 Score=37.71 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=26.5
Q ss_pred ccccccccC-CccCCcccCccccccCCCCCCCCCCC
Q 004418 452 TDVTERKES-PAWDFDEEDSRWKWKKPPPLSKKPIG 486 (754)
Q Consensus 452 ~d~~~~~~~-p~~~~~~~~~~w~w~~~pp~~~~~~~ 486 (754)
.|||.|+|. ||..+|+++.+ .+|+.++++..
T Consensus 2 ~Dis~G~E~~pI~~vN~vD~~----~~p~~F~Yi~~ 33 (98)
T smart00468 2 LDISNGKENVPVPLVNEVDED----PPPPDFEYISE 33 (98)
T ss_pred ccccCCccCCCcceEecCCCC----CCCCCcEECcc
Confidence 699999999 99999999986 66788888763
No 208
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=67.18 E-value=4.1 Score=51.10 Aligned_cols=49 Identities=31% Similarity=0.789 Sum_probs=42.2
Q ss_pred cccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCC
Q 004418 13 EQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
-.|..|.....+ ..+.|..|...+|..|+. ||++.++.++|.|+.|-..
T Consensus 156 ~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 156 PQCNTCSKGKEE-KLLLCDSCDDSYHTYCLR-PPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred hhhhccccCCCc-cceecccccCcccccccC-CCCCcCCcCcccCCccccc
Confidence 467888775555 556999999999999999 9999999999999999754
No 209
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=67.12 E-value=5.5 Score=30.62 Aligned_cols=39 Identities=21% Similarity=0.672 Sum_probs=23.0
Q ss_pred ccccCCCCCCCeec---CCCCcchhhhHHhhhccCCc-ccccc
Q 004418 146 CSFCMQLPERPVTT---PCGHNFCLKCFQKWIGQGKR-TCAKC 184 (754)
Q Consensus 146 C~IC~~~~~~Pv~l---~CgH~FC~~Ci~~~~~~~~~-~CP~C 184 (754)
|.+|.++...-+.= .|+-.+...|+..++..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888887766553 48888999999999986443 69987
No 210
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=64.32 E-value=5.1 Score=43.81 Aligned_cols=39 Identities=28% Similarity=0.737 Sum_probs=29.5
Q ss_pred CCCcccccccCCCC---------CC--CceecCCCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 10 NLDEQCMRCKVKPR---------PE--ETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 10 ~~~~~c~~c~~~~~---------~~--~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
+.-|.|.||+..|- .+ --|+|..|.|-||+. + -.||-|.
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~--R-----------~~C~~Cg 231 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV--R-----------VKCSHCE 231 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc--C-----------ccCCCCC
Confidence 45669999999772 11 149999999999997 2 2488995
No 211
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.67 E-value=5.1 Score=45.25 Aligned_cols=33 Identities=33% Similarity=0.882 Sum_probs=25.0
Q ss_pred CCcccccC-CCCCCC---eecCCCCcchhhhHHhhhc
Q 004418 143 SLNCSFCM-QLPERP---VTTPCGHNFCLKCFQKWIG 175 (754)
Q Consensus 143 ~l~C~IC~-~~~~~P---v~l~CgH~FC~~Ci~~~~~ 175 (754)
..+|.||. +....- .+..|+|.||..|+.+++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 57899999 433321 1358999999999999877
No 212
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=63.44 E-value=5.7 Score=43.48 Aligned_cols=39 Identities=26% Similarity=0.751 Sum_probs=29.8
Q ss_pred CCCcccccccCCCC--------CC--CceecCCCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 10 NLDEQCMRCKVKPR--------PE--ETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 10 ~~~~~c~~c~~~~~--------~~--~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
+..+.|.||+..|. .+ --|+|..|.|-||+. + -.||-|.
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~--R-----------~~C~~Cg 233 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV--R-----------VKCSNCE 233 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc--C-----------ccCCCCC
Confidence 35799999999771 11 239999999999997 2 2499995
No 213
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=63.31 E-value=4 Score=45.51 Aligned_cols=27 Identities=37% Similarity=0.956 Sum_probs=21.6
Q ss_pred cchhhhHHhhhcc------------CCccccccccccCc
Q 004418 164 NFCLKCFQKWIGQ------------GKRTCAKCRHIIPP 190 (754)
Q Consensus 164 ~FC~~Ci~~~~~~------------~~~~CP~CR~~~~~ 190 (754)
..|..|+.+|+.. ++-.||+||+.|..
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 4589999999873 34589999999864
No 214
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.11 E-value=2.9 Score=43.18 Aligned_cols=39 Identities=28% Similarity=0.712 Sum_probs=30.4
Q ss_pred cccccccccCceecCCCC-hhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 518 CLICRQVMNLPITTPCAH-NFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 518 CpIC~~~~~~Pv~lpCgH-sFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
|-+|.+-=..-+++||.| .+|..|-.. ...||.|+....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----------------------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-----------------------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-----------------------CccCCCCcChhh
Confidence 889998777767789998 689988432 336999998765
No 215
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=61.46 E-value=4.2 Score=43.69 Aligned_cols=42 Identities=31% Similarity=0.759 Sum_probs=35.1
Q ss_pred CcccccCCCCC----CCeecCCCCcchhhhHHhhhccCCcccccccc
Q 004418 144 LNCSFCMQLPE----RPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRH 186 (754)
Q Consensus 144 l~C~IC~~~~~----~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~ 186 (754)
..||||.+.+. .|..++|||.....|+......+ ..||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 34999987654 56678999999999999888876 99999987
No 216
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.55 E-value=3.4 Score=44.01 Aligned_cols=35 Identities=31% Similarity=0.731 Sum_probs=30.6
Q ss_pred cCCcccccCCCCCCCeecCC----CCcchhhhHHhhhcc
Q 004418 142 GSLNCSFCMQLPERPVTTPC----GHNFCLKCFQKWIGQ 176 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l~C----gH~FC~~Ci~~~~~~ 176 (754)
..|.|.+|.+.+++.-+..| .|.||..|-.+.+++
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 46999999999999888877 699999999888774
No 217
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=57.91 E-value=7.8 Score=35.36 Aligned_cols=28 Identities=21% Similarity=0.516 Sum_probs=24.2
Q ss_pred CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCc
Q 004418 532 PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDI 578 (754)
Q Consensus 532 pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v 578 (754)
.|.|.|-..||.+|+.... .||.|...-
T Consensus 80 ~CNHaFH~hCisrWlktr~-------------------vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRN-------------------VCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcC-------------------cCCCcCcce
Confidence 6999999999999998765 799997653
No 218
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=57.86 E-value=6.1 Score=42.48 Aligned_cols=45 Identities=29% Similarity=0.722 Sum_probs=34.6
Q ss_pred ccccccccccccC----ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNL----PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~----Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
++.||||.+.+.. |..++|||..=..|+...... + +.||.|.. +.
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~------------------~-y~CP~C~~-~~ 206 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE------------------G-YTCPICSK-PG 206 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc------------------C-CCCCcccc-hH
Confidence 4569999987764 667899998888888866542 2 69999988 54
No 219
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=56.56 E-value=11 Score=37.25 Aligned_cols=47 Identities=21% Similarity=0.510 Sum_probs=35.0
Q ss_pred cCCcccccCCCCCCCeecCCCCcc-----hhhhHHhhhcc-CCccccccccccC
Q 004418 142 GSLNCSFCMQLPERPVTTPCGHNF-----CLKCFQKWIGQ-GKRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l~CgH~F-----C~~Ci~~~~~~-~~~~CP~CR~~~~ 189 (754)
.+..|-||.+-.. +...||.-.- ...|+.+|+.. +...|++|+..+.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4568999998754 3345666533 89999999874 4679999998874
No 220
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=56.43 E-value=8.9 Score=36.79 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=26.6
Q ss_pred ccccccccccccC--c-eecCCC------ChhhHHhHHHHHc
Q 004418 515 EFSCLICRQVMNL--P-ITTPCA------HNFCKSCLEGAFA 547 (754)
Q Consensus 515 ~l~CpIC~~~~~~--P-v~lpCg------HsFC~~Cl~~~~~ 547 (754)
...|.||++.+.+ = |.++|+ |-||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 7889999998887 3 445776 6799999999843
No 221
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=55.90 E-value=9.2 Score=46.44 Aligned_cols=58 Identities=22% Similarity=0.639 Sum_probs=41.0
Q ss_pred HHHhhh-hccccccccccccC--cee--cCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCC
Q 004418 508 VREKLL-KEFSCLICRQVMNL--PIT--TPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTD 577 (754)
Q Consensus 508 ~~~~L~-e~l~CpIC~~~~~~--Pv~--lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~ 577 (754)
|...|. ..+.|.||.+.+.. |+- ..|-|.|=..||..|..... . .....+.||.|+..
T Consensus 183 li~~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~e-----k-------~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 183 LIEQLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSE-----K-------TGQDGWRCPACQSV 245 (950)
T ss_pred HHHHHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhh-----h-------ccCccccCCcccch
Confidence 444443 46889999998875 542 26999999999999987532 0 11247899999843
No 222
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=54.39 E-value=3.4 Score=43.96 Aligned_cols=30 Identities=30% Similarity=0.721 Sum_probs=23.3
Q ss_pred CCCcccccccCCC-------C--CCCc--eecCCCCCcccc
Q 004418 10 NLDEQCMRCKVKP-------R--PEET--ITCSTCVTPWHV 39 (754)
Q Consensus 10 ~~~~~c~~c~~~~-------~--~~~~--l~c~~c~~~~h~ 39 (754)
..-++|.||+..| . .+-. |+|.-|.|-||+
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~ 223 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHY 223 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHH
Confidence 4567999999987 2 1222 899999999997
No 223
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.22 E-value=13 Score=35.42 Aligned_cols=58 Identities=29% Similarity=0.555 Sum_probs=36.2
Q ss_pred hhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 511 KLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-..++.+|.||+..-. .-.|||+ |..|-.+... +-.|..+++..+....|-.|+....
T Consensus 61 Gv~ddatC~IC~KTKF---ADG~GH~-C~YCq~r~CA-------RCGGrv~lrsNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKF---ADGCGHN-CSYCQTRFCA-------RCGGRVSLRSNKVMWVCNLCRKQQE 118 (169)
T ss_pred ccCcCcchhhhhhccc---ccccCcc-cchhhhhHHH-------hcCCeeeeccCceEEeccCCcHHHH
Confidence 3467899999997422 1278885 6666554432 1123345666777888888877543
No 224
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=53.64 E-value=6.8 Score=31.35 Aligned_cols=42 Identities=17% Similarity=0.560 Sum_probs=25.4
Q ss_pred hccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+.|.||.|.+.|.. ..++.-|........ ..+.||+|...+.
T Consensus 1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~-----------------~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSES-----------------KNVVCPICSSRVT 42 (54)
T ss_pred CCcCCCCCCCccCH-------HHHHHHHHhHCcCCC-----------------CCccCCCchhhhh
Confidence 36899999995443 234555555443322 2568999987443
No 225
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=53.29 E-value=7.1 Score=47.36 Aligned_cols=47 Identities=30% Similarity=0.760 Sum_probs=36.8
Q ss_pred cCCcccccCCCCCC--Cee--cCCCCcchhhhHHhhhcc------CCcccccccccc
Q 004418 142 GSLNCSFCMQLPER--PVT--TPCGHNFCLKCFQKWIGQ------GKRTCAKCRHII 188 (754)
Q Consensus 142 ~~l~C~IC~~~~~~--Pv~--l~CgH~FC~~Ci~~~~~~------~~~~CP~CR~~~ 188 (754)
..+.|.||.+.+.. |+- ..|-|+|.+.||.+|-.+ ..+.||.|....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 57899999998773 432 279999999999999764 356899998543
No 226
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=52.09 E-value=1.5 Score=37.36 Aligned_cols=41 Identities=24% Similarity=0.609 Sum_probs=22.6
Q ss_pred ccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
++.||.|...|..- . +|.+|..|-..+.. ...||.|..++.
T Consensus 1 e~~CP~C~~~L~~~---~-~~~~C~~C~~~~~~--------------------~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ---G-GHYHCEACQKDYKK--------------------EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEE---T-TEEEETTT--EEEE--------------------EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEEe---C-CEEECcccccccee--------------------cccCCCcccHHH
Confidence 46899999875531 2 88889999774422 347999998876
No 227
>PHA02862 5L protein; Provisional
Probab=51.80 E-value=12 Score=36.34 Aligned_cols=45 Identities=29% Similarity=0.682 Sum_probs=33.7
Q ss_pred cccccCCCCCCCeecCCCCc-----chhhhHHhhhcc-CCccccccccccCc
Q 004418 145 NCSFCMQLPERPVTTPCGHN-----FCLKCFQKWIGQ-GKRTCAKCRHIIPP 190 (754)
Q Consensus 145 ~C~IC~~~~~~Pv~l~CgH~-----FC~~Ci~~~~~~-~~~~CP~CR~~~~~ 190 (754)
.|=||.+.-.+. .-||.-+ -...|+.+|+.. ++..|++|+..+..
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 688999876544 3566543 578999999974 45799999988753
No 228
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=50.60 E-value=2.2 Score=31.51 Aligned_cols=32 Identities=25% Similarity=0.727 Sum_probs=17.0
Q ss_pred CceecCCCCCcccccCCCCCCCccccCC-cccCCCC
Q 004418 26 ETITCSTCVTPWHVACLTKPPETLASSL-SWLCPDC 60 (754)
Q Consensus 26 ~~l~c~~c~~~~h~~cl~~~p~~~~~~~-~w~cp~c 60 (754)
.+|.|+.|...-|..|--... ++.+ +|+|--|
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~---~~~~~~W~C~~C 35 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSE---VPDGDDWLCDRC 35 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS-----SS-----HHH
T ss_pred ceEEeCCCCCcCChhhCCccc---CCCCCcEECCcC
Confidence 579999999999999988433 3444 6999655
No 229
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.22 E-value=15 Score=31.36 Aligned_cols=25 Identities=32% Similarity=0.946 Sum_probs=20.3
Q ss_pred CChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 534 AHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 534 gHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
-|+||..|....+.+ .||.|...+.
T Consensus 28 EcTFCadCae~~l~g---------------------~CPnCGGelv 52 (84)
T COG3813 28 ECTFCADCAENRLHG---------------------LCPNCGGELV 52 (84)
T ss_pred eeehhHhHHHHhhcC---------------------cCCCCCchhh
Confidence 478999999876643 5999999877
No 230
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.01 E-value=31 Score=35.73 Aligned_cols=62 Identities=24% Similarity=0.426 Sum_probs=41.8
Q ss_pred HHHHhhhh---ccccccccccccC--ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 507 SVREKLLK---EFSCLICRQVMNL--PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 507 ~~~~~L~e---~l~CpIC~~~~~~--Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
++++-|.+ .--|.+|.-.+.. -+.|-|-|.|-..|+..+...-. . + .....+.||.|...|-
T Consensus 39 SYLqWL~DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lP--a-n--------TAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 39 SYLQWLQDSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLP--A-N--------TAPAGYQCPCCSQEIF 105 (299)
T ss_pred HHHHHHhhcCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCC--C-c--------CCCCcccCCCCCCccC
Confidence 34444443 2459999887775 56789999999999988765332 1 0 1122468999988765
No 231
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=49.28 E-value=7.8 Score=30.31 Aligned_cols=29 Identities=38% Similarity=0.875 Sum_probs=18.8
Q ss_pred cccccccccC--ceecCCCChhhHH--------hHHHHHcCC
Q 004418 518 CLICRQVMNL--PITTPCAHNFCKS--------CLEGAFAGK 549 (754)
Q Consensus 518 CpIC~~~~~~--Pv~lpCgHsFC~~--------Cl~~~~~~~ 549 (754)
|-||++.-.. |++.||. |.. ||.+|+...
T Consensus 1 CrIC~~~~~~~~~li~pC~---C~Gs~~~vH~~CL~~W~~~~ 39 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCR---CKGSMKYVHRSCLERWIRES 39 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS----SSCCGSEECCHHHHHHHHH
T ss_pred CeEeCCcCCCCCceecccc---cCCCcchhHHHHHHHHHHhc
Confidence 5688876554 6788998 554 999998754
No 232
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=47.16 E-value=14 Score=41.23 Aligned_cols=39 Identities=18% Similarity=0.436 Sum_probs=24.3
Q ss_pred ChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 535 HNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 535 HsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
--.|..|+-+||...+... +... --.+...||+||+.+.
T Consensus 313 PmWC~~Cm~kwFasrQd~~---~~~~---Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQ---HPET---WLSGKCPCPTCRAKFC 351 (358)
T ss_pred chHHHHHHHHHhhhcCCCC---Chhh---hhcCCCCCCCCcccce
Confidence 3458889999998765111 1111 1122458999999876
No 233
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=46.98 E-value=11 Score=40.74 Aligned_cols=48 Identities=21% Similarity=0.431 Sum_probs=37.7
Q ss_pred hcccCCcccccCCCCC---CCeecCCCCcchhhhHHhhhccC--Ccccccccc
Q 004418 139 LLDGSLNCSFCMQLPE---RPVTTPCGHNFCLKCFQKWIGQG--KRTCAKCRH 186 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Ci~~~~~~~--~~~CP~CR~ 186 (754)
.++.-+.||+=.+.-. .|+++.|||..-..-+....+++ .+.||.|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 5677899998665443 58999999999999888877764 468999943
No 234
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=46.80 E-value=8.8 Score=41.58 Aligned_cols=38 Identities=32% Similarity=0.744 Sum_probs=19.1
Q ss_pred CcccccccCCC------CCC----CceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 12 DEQCMRCKVKP------RPE----ETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 12 ~~~c~~c~~~~------~~~----~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
-|.|.||+..| ... --|.|.-|.|-||+. + ..||-|..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~--R-----------~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV--R-----------IKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE----T-----------TS-TTT--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec--C-----------CCCcCCCC
Confidence 48999999977 222 349999999999987 2 34999964
No 235
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=46.43 E-value=11 Score=35.30 Aligned_cols=45 Identities=24% Similarity=0.468 Sum_probs=29.8
Q ss_pred cCCcccccCCCCC---CC--eecCCCCcchhhhHHhhhccCCcccccccc
Q 004418 142 GSLNCSFCMQLPE---RP--VTTPCGHNFCLKCFQKWIGQGKRTCAKCRH 186 (754)
Q Consensus 142 ~~l~C~IC~~~~~---~P--v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~ 186 (754)
....|.+|...|. ++ +-..|.|.+|..|-..........|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 4568999987543 22 234899999999976633344678999965
No 236
>PHA02862 5L protein; Provisional
Probab=46.40 E-value=17 Score=35.24 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=32.3
Q ss_pred ccccccccccCceecCCCC-----hhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 517 SCLICRQVMNLPITTPCAH-----NFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 517 ~CpIC~~~~~~Pv~lpCgH-----sFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.|=||.+--.+. .-||.- -.-+.||++|++.+. ...|+.|+..+.
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~-----------------k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSK-----------------KKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCC-----------------CcCccCCCCeEE
Confidence 588999876544 467761 123569999997553 558999999876
No 237
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=45.27 E-value=3.6 Score=35.02 Aligned_cols=42 Identities=24% Similarity=0.525 Sum_probs=23.7
Q ss_pred CCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 143 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
++.||.|...+..- . +|.+|..|-..+.. ...||.|..++..
T Consensus 1 e~~CP~C~~~L~~~---~-~~~~C~~C~~~~~~--~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ---G-GHYHCEACQKDYKK--EAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEEE---T-TEEEETTT--EEEE--EEE-TTT-SB-EE
T ss_pred CCcCCCCCCccEEe---C-CEEECcccccccee--cccCCCcccHHHH
Confidence 46899999875431 2 88899999876544 4589999887753
No 238
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=44.88 E-value=7.2 Score=41.59 Aligned_cols=51 Identities=24% Similarity=0.502 Sum_probs=38.0
Q ss_pred CCCcccccccC------CCCCCCceecCCCCCcccccCCCCCCCcccc---CCcccCCCCC
Q 004418 10 NLDEQCMRCKV------KPRPEETITCSTCVTPWHVACLTKPPETLAS---SLSWLCPDCS 61 (754)
Q Consensus 10 ~~~~~c~~c~~------~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~---~~~w~cp~cs 61 (754)
-....|-.|-. ....+.++.|.+|.+.+|-.|+.-|| .+|. +-.|.|-+|.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~-elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIP-ELVGQYKTYFWKCSSCE 315 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCH-HHHhHHhhcchhhcccH
Confidence 34556777743 33556779999999999999999544 5554 4599999995
No 239
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.61 E-value=12 Score=43.11 Aligned_cols=36 Identities=28% Similarity=0.898 Sum_probs=30.5
Q ss_pred ccCCcccccCCCCCC-CeecCCCCcchhhhHHhhhcc
Q 004418 141 DGSLNCSFCMQLPER-PVTTPCGHNFCLKCFQKWIGQ 176 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~-Pv~l~CgH~FC~~Ci~~~~~~ 176 (754)
....+|-||.+.+.. .+.+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 445899999999885 666799999999999998764
No 240
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.24 E-value=12 Score=37.35 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=33.3
Q ss_pred cCCcccccCCCCCCCe-------ecCCCCcchhhhHHhhhcc----C------CccccccccccCc
Q 004418 142 GSLNCSFCMQLPERPV-------TTPCGHNFCLKCFQKWIGQ----G------KRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv-------~l~CgH~FC~~Ci~~~~~~----~------~~~CP~CR~~~~~ 190 (754)
+..-|-||..+--+-+ .+.||..|..-|+..|++. + -..||.|..++..
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 3455666654433211 1479999999999999873 1 1379999888764
No 241
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=40.58 E-value=9.9 Score=34.28 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=21.3
Q ss_pred cccccccC-CccCCcccCccccccCCCCCCCCCCC
Q 004418 453 DVTERKES-PAWDFDEEDSRWKWKKPPPLSKKPIG 486 (754)
Q Consensus 453 d~~~~~~~-p~~~~~~~~~~w~w~~~pp~~~~~~~ 486 (754)
|||.|+|. ||..+|++++. .+|+.+.++..
T Consensus 1 Dis~g~e~~pI~~~N~vd~~----~~p~~F~Yi~~ 31 (103)
T PF05033_consen 1 DISRGKENVPIPVVNDVDDE----PPPPNFEYIPE 31 (103)
T ss_dssp -TTCTSSSS-EEEEESSSS------SSTSSEE-SS
T ss_pred CCCCCccCCCEEEEeCCCCC----CCCCCeEEeee
Confidence 89999999 99999999986 44677777663
No 242
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=40.57 E-value=21 Score=41.09 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=34.4
Q ss_pred cccccccC--CCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 13 EQCMRCKV--KPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 13 ~~c~~c~~--~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
-.|-||.. ..++.+...|+.|.++||-.|.. |+. .....|++-.|.-
T Consensus 84 ~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i-~~~--~~~~~~~~~~c~~ 132 (464)
T KOG4323|consen 84 LNPNVLTSETVLPENEKVICGRCKSGYHQGCNI-PRF--PSLDIGESTECVF 132 (464)
T ss_pred cCCcccccccccCchhhhhhhhhccCcccccCc-cCc--CcCCccccccccc
Confidence 35667766 33556789999999999999998 553 3345788777764
No 243
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=40.49 E-value=16 Score=32.81 Aligned_cols=37 Identities=35% Similarity=0.778 Sum_probs=30.1
Q ss_pred CCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccC
Q 004418 143 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
.-.|-||...+..+ ||.||..|..+ ...|.+|...+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-----cCcccccCCeec
Confidence 35799999887765 88999999765 679999988773
No 244
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=40.47 E-value=21 Score=35.50 Aligned_cols=21 Identities=24% Similarity=0.700 Sum_probs=17.8
Q ss_pred CCCCceecCCCCCcccccCCC
Q 004418 23 RPEETITCSTCVTPWHVACLT 43 (754)
Q Consensus 23 ~~~~~l~c~~c~~~~h~~cl~ 43 (754)
++..+..|.+|--.||+.-|.
T Consensus 120 ~~nVLFRC~~C~RawH~~HLP 140 (175)
T PF15446_consen 120 PDNVLFRCTSCHRAWHFEHLP 140 (175)
T ss_pred hhheEEecCCccceeehhhCC
Confidence 344567999999999999998
No 245
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=40.14 E-value=12 Score=34.36 Aligned_cols=30 Identities=17% Similarity=0.560 Sum_probs=24.2
Q ss_pred ccccccCCC--CCCCceecCCCCCcccccCCC
Q 004418 14 QCMRCKVKP--RPEETITCSTCVTPWHVACLT 43 (754)
Q Consensus 14 ~c~~c~~~~--~~~~~l~c~~c~~~~h~~cl~ 43 (754)
.|++|.... -..+.|.|..|.+.|+++=+-
T Consensus 37 aCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 37 ACEICGPKGYYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred eccccCCCceEEECCEEEEecCCCEEehhhcc
Confidence 599996644 557789999999999998544
No 246
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.14 E-value=25 Score=43.12 Aligned_cols=38 Identities=26% Similarity=0.635 Sum_probs=29.4
Q ss_pred HhcccCCcccccCCC-CCCCeec-CCCCcchhhhHHhhhc
Q 004418 138 DLLDGSLNCSFCMQL-PERPVTT-PCGHNFCLKCFQKWIG 175 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~-~~~Pv~l-~CgH~FC~~Ci~~~~~ 175 (754)
..++..-.|.+|... +..|..+ +|||.|.+.|+.+...
T Consensus 812 ~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 812 RVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 345677899999864 4467554 9999999999988654
No 247
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=39.05 E-value=13 Score=35.72 Aligned_cols=33 Identities=24% Similarity=0.714 Sum_probs=26.1
Q ss_pred CCcccccCCCCCC--C-eecCCC------CcchhhhHHhhhc
Q 004418 143 SLNCSFCMQLPER--P-VTTPCG------HNFCLKCFQKWIG 175 (754)
Q Consensus 143 ~l~C~IC~~~~~~--P-v~l~Cg------H~FC~~Ci~~~~~ 175 (754)
...|.||++.+.+ - |.++|| |.||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 7889999998876 3 345776 4599999999943
No 248
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.75 E-value=23 Score=30.25 Aligned_cols=26 Identities=19% Similarity=0.586 Sum_probs=20.7
Q ss_pred CCcchhhhHHhhhccCCccccccccccCc
Q 004418 162 GHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 162 gH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
-|+||..|....+. ..||.|.-.+..
T Consensus 28 EcTFCadCae~~l~---g~CPnCGGelv~ 53 (84)
T COG3813 28 ECTFCADCAENRLH---GLCPNCGGELVA 53 (84)
T ss_pred eeehhHhHHHHhhc---CcCCCCCchhhc
Confidence 46899999987664 489999877754
No 249
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=38.72 E-value=11 Score=26.46 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=12.0
Q ss_pred ccccccCCCCCCCceecCCCCCcccccC
Q 004418 14 QCMRCKVKPRPEETITCSTCVTPWHVAC 41 (754)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~c 41 (754)
.|-+|+......-...|..|+.-.|+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 4668888666667799999999999987
No 250
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.84 E-value=26 Score=35.09 Aligned_cols=64 Identities=25% Similarity=0.354 Sum_probs=40.5
Q ss_pred HHHhhhhccccccccccccC---ce----ecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 508 VREKLLKEFSCLICRQVMNL---PI----TTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 508 ~~~~L~e~l~CpIC~~~~~~---Pv----~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+++.-++..-|.||+-+-.+ |- -+.||..|-+-||..|+.+-...|+ .- .-.--.||.|..++.
T Consensus 158 ~Lekdd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQ----SF----diiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 158 FLEKDDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQ----SF----DIIFGECPYCSDPIA 228 (234)
T ss_pred hcCcchhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccc----ee----eeeeccCCCCCCcce
Confidence 44444455679999876544 21 1379999999999999875431110 00 011237999999887
No 251
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.72 E-value=15 Score=39.35 Aligned_cols=36 Identities=19% Similarity=0.618 Sum_probs=30.6
Q ss_pred ccccccccccccCceecCC----CChhhHHhHHHHHcCCc
Q 004418 515 EFSCLICRQVMNLPITTPC----AHNFCKSCLEGAFAGKT 550 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~lpC----gHsFC~~Cl~~~~~~~~ 550 (754)
-|.|-+|.+-|.+-.+..| .|-||--|-...+..+.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 5899999999999877766 59999999988887553
No 252
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.47 E-value=16 Score=39.25 Aligned_cols=30 Identities=23% Similarity=0.614 Sum_probs=23.2
Q ss_pred CCCcchhhhHHhhhcc------------CCccccccccccCc
Q 004418 161 CGHNFCLKCFQKWIGQ------------GKRTCAKCRHIIPP 190 (754)
Q Consensus 161 CgH~FC~~Ci~~~~~~------------~~~~CP~CR~~~~~ 190 (754)
|....|..|+.+|+.. ++-.||.||+.|..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 4556789999999752 45689999998864
No 253
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=37.02 E-value=27 Score=30.40 Aligned_cols=47 Identities=17% Similarity=0.506 Sum_probs=21.4
Q ss_pred CCcccccCCCCC-----CCee--cCCCCcchhhhHHhhhccCCccccccccccC
Q 004418 143 SLNCSFCMQLPE-----RPVT--TPCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 143 ~l~C~IC~~~~~-----~Pv~--l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
.-.|.||.+..- ++.. -.|+--.|..|..--.+.+...||.|+..+.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 457999987554 2222 2678788999998767777889999998775
No 254
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=35.68 E-value=14 Score=29.13 Aligned_cols=31 Identities=26% Similarity=0.761 Sum_probs=21.1
Q ss_pred ecCCC-ChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 530 TTPCA-HNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 530 ~lpCg-HsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+.|. |..|..|+...+..+. .||.|..++.
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~-------------------~C~iC~~~LP 46 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSD-------------------RCPICGKPLP 46 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSS-------------------EETTTTEE--
T ss_pred eeeecchhHHHHHHHHHhcccc-------------------CCCcccCcCc
Confidence 45676 8899999998776554 7999998776
No 255
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=35.61 E-value=32 Score=44.37 Aligned_cols=56 Identities=27% Similarity=0.622 Sum_probs=35.9
Q ss_pred ccccccccc-cccC-c-eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQ-VMNL-P-ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~-~~~~-P-v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+-.|-||+- .+.. | +.|.|+|.|-..|..+.+...- .|. |-.-.-+.||.|..+|.
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW-------~GP--RItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRW-------LGP--RITFGFISCPICKNKIN 3544 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcc-------cCC--eeEEeeeecccccchhh
Confidence 445777763 3332 4 6789999999999887776442 110 00012358999999887
No 256
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.18 E-value=29 Score=28.35 Aligned_cols=42 Identities=26% Similarity=0.740 Sum_probs=26.5
Q ss_pred ccccccccccCc--eecCCC--ChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 517 SCLICRQVMNLP--ITTPCA--HNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 517 ~CpIC~~~~~~P--v~lpCg--HsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.|-.|..-+..- -..-|. .+||..|....+.. .||.|...+.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~---------------------~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLNG---------------------VCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcC---------------------cCcCCCCccc
Confidence 355565544421 122233 37999999987642 5999998776
No 257
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=34.47 E-value=33 Score=42.18 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=11.1
Q ss_pred ccccccCCCCCCCCCCCCCccee
Q 004418 697 VKKVESGVPKGLTNDGDGSVKQN 719 (754)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~ 719 (754)
+..+|...+.+--+++|++.+.-
T Consensus 1472 ~~eleeGedgdD~ds~D~Dee~~ 1494 (1516)
T KOG1832|consen 1472 MEELEEGEDGDDGDSEDEDEEDD 1494 (1516)
T ss_pred HHHHhhcCCCCCCCccccchhhh
Confidence 33445544444455555555443
No 258
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=34.24 E-value=45 Score=29.06 Aligned_cols=47 Identities=28% Similarity=0.588 Sum_probs=19.0
Q ss_pred ccccccccccccC-----ceec--CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNL-----PITT--PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~-----Pv~l--pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.-.|.||.+-+-. +++. .|+--.|+.|+.--.+.. ...||.|++...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg------------------~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEG------------------NQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-------------------SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcC------------------cccccccCCCcc
Confidence 4579999985542 3332 688888999997444322 347999998665
No 259
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=34.17 E-value=26 Score=42.40 Aligned_cols=30 Identities=30% Similarity=0.729 Sum_probs=26.3
Q ss_pred CCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 32 TCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 32 ~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
+|-.-+|..|+. |-+-..+++.|.||-|.-
T Consensus 1 ~~~r~~~~~~~~-p~~~~~~~~~~k~~~~e~ 30 (696)
T KOG0383|consen 1 TCPRAYHRVCLD-PKLKEEPEMDPKCPGCES 30 (696)
T ss_pred CCCcccCcCCCC-cccccCCcCCccCcchhh
Confidence 577889999999 888888889999999974
No 260
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=32.60 E-value=22 Score=24.46 Aligned_cols=21 Identities=24% Similarity=0.600 Sum_probs=14.0
Q ss_pred ccccccccccCce-ecC-CCChh
Q 004418 517 SCLICRQVMNLPI-TTP-CAHNF 537 (754)
Q Consensus 517 ~CpIC~~~~~~Pv-~lp-CgHsF 537 (754)
.||-|...+..-. .-| |||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 4888887775432 234 88887
No 261
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=32.59 E-value=31 Score=28.12 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=14.1
Q ss_pred ccccccCCCCCCCceecCCCCCccc
Q 004418 14 QCMRCKVKPRPEETITCSTCVTPWH 38 (754)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h 38 (754)
.|.||+...+-....+|..|..|.|
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipth 25 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPTH 25 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcCc
Confidence 3667776664445555555555554
No 262
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=32.20 E-value=27 Score=25.16 Aligned_cols=10 Identities=40% Similarity=1.458 Sum_probs=8.1
Q ss_pred CcccCCCCCC
Q 004418 53 LSWLCPDCSG 62 (754)
Q Consensus 53 ~~w~cp~cs~ 62 (754)
..|.||.|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 5799999964
No 263
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=32.17 E-value=83 Score=33.54 Aligned_cols=51 Identities=20% Similarity=0.523 Sum_probs=30.5
Q ss_pred hccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+.|.|.-|..+=.. .-|-|.-.||-.=+.+.. +-| .....+.||.|...+.
T Consensus 170 E~~KC~SCNrlGq~-sCLRCK~cfCddHvrrKg----~ky----------~k~k~~PCPKCg~et~ 220 (314)
T PF06524_consen 170 ETFKCQSCNRLGQY-SCLRCKICFCDDHVRRKG----FKY----------EKGKPIPCPKCGYETQ 220 (314)
T ss_pred ccccccccccccch-hhhheeeeehhhhhhhcc----ccc----------ccCCCCCCCCCCCccc
Confidence 46889888775443 235666667765333221 111 1223678999999887
No 264
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=31.95 E-value=35 Score=31.48 Aligned_cols=54 Identities=24% Similarity=0.504 Sum_probs=32.3
Q ss_pred cccccccccccCcee--------cCC---CChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 516 FSCLICRQVMNLPIT--------TPC---AHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 516 l~CpIC~~~~~~Pv~--------lpC---gHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
..|..|...-.+..+ ..| .-.||..||...+...... + .......||.||..-.
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~e---------v-~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEE---------V-LEDPNWKCPKCRGICN 72 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHH---------H-hcCCceECCCCCCeeC
Confidence 456666654443322 245 6679999998887643200 0 1223678999998554
No 265
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=31.93 E-value=27 Score=43.90 Aligned_cols=46 Identities=28% Similarity=0.724 Sum_probs=39.7
Q ss_pred CcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
|-+|.+|- ....+|.|.||-.-+|+-|.. ||+-.++...|+|--|-
T Consensus 344 ddhcrf~~---d~~~~lc~Et~prvvhlEcv~-hP~~~~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 344 DDHCRFCH---DLGDLLCCETCPRVVHLECVF-HPRFAVPSAFWECEVCN 389 (1414)
T ss_pred cccccccC---cccceeecccCCceEEeeecC-CccccCCCccchhhhhh
Confidence 44666664 445789999999999999999 99999999999999887
No 266
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=30.69 E-value=26 Score=41.80 Aligned_cols=46 Identities=22% Similarity=0.610 Sum_probs=37.8
Q ss_pred cccccccCCC--CCCCceecCC--CCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 13 EQCMRCKVKP--RPEETITCST--CVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 13 ~~c~~c~~~~--~~~~~l~c~~--c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
|-|-||-... .+.-+.-|+. |...-|-.|-- .-.||+|.|||-.|.
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG---IvqVPtGpWfCrKCe 55 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG---IVQVPTGPWFCRKCE 55 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcce---eEecCCCchhhhhhh
Confidence 5688997744 4555688984 88999999988 567999999999996
No 267
>PLN02400 cellulose synthase
Probab=30.35 E-value=38 Score=42.83 Aligned_cols=67 Identities=30% Similarity=0.585 Sum_probs=0.0
Q ss_pred ccccccccc-----Cceec--CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHH
Q 004418 518 CLICRQVMN-----LPITT--PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNRE 590 (754)
Q Consensus 518 CpIC~~~~~-----~Pv~l--pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~ 590 (754)
|.||.+-+- +|.+. .|+--.|+.|.+ |++..|.. .||.|++...
T Consensus 39 CqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE---------YERkeGnq---------~CPQCkTrYk----------- 89 (1085)
T PLN02400 39 CQICGDDVGVTETGDVFVACNECAFPVCRPCYE---------YERKDGTQ---------CCPQCKTRYR----------- 89 (1085)
T ss_pred eeecccccCcCCCCCEEEEEccCCCccccchhh---------eecccCCc---------cCcccCCccc-----------
Q ss_pred HHHHHHHHHcccCCCCCCCCcCcccccCCCC
Q 004418 591 LMDVIESLKHKTEENEDPPEELSDEEINGME 621 (754)
Q Consensus 591 L~~lve~l~~~~~~~~~~~e~~~ee~d~~~~ 621 (754)
+.......+-++++++.+|-+++
T Consensus 90 --------R~KgsprV~GDeeedd~DDlenE 112 (1085)
T PLN02400 90 --------RHKGSPRVEGDEDEDDVDDLENE 112 (1085)
T ss_pred --------cccCCCCCCcccccccchhhhhh
No 268
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=29.68 E-value=18 Score=30.07 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=14.6
Q ss_pred eCCcCceEEEEEEEEeCCCCCCCCcc
Q 004418 408 IGIQGFKVCRYLFVRCDNEPAPWTSD 433 (754)
Q Consensus 408 ~g~~g~~v~~f~l~R~~~qp~~~~~~ 433 (754)
..++-|+=-+|.+.|++|||.-.-++
T Consensus 39 Pd~srf~N~rF~~eri~gqpl~y~s~ 64 (67)
T PF12218_consen 39 PDISRFKNARFVYERIPGQPLYYVSE 64 (67)
T ss_dssp --GGGEES-EEEE-SSTT--EEEE-B
T ss_pred ccHHhhccceEEEeecCCCceEeeec
Confidence 44566777799999999999754444
No 269
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=29.57 E-value=47 Score=40.22 Aligned_cols=72 Identities=18% Similarity=0.464 Sum_probs=47.3
Q ss_pred hhccccccccccccCce-ecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHHH
Q 004418 513 LKEFSCLICRQVMNLPI-TTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNREL 591 (754)
Q Consensus 513 ~e~l~CpIC~~~~~~Pv-~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~L 591 (754)
.-.|.|||+..-+.-|. ...|.|- .|+...+--+. .-++..+.||+|-+... +..+.....+
T Consensus 304 ~vSL~CPl~~~Rm~~P~r~~~CkHl---QcFD~~~~lq~------------n~~~pTW~CPVC~~~~~--~e~l~iD~~~ 366 (636)
T KOG2169|consen 304 RVSLNCPLSKMRMSLPARGHTCKHL---QCFDALSYLQM------------NEQKPTWRCPVCQKAAP--FEGLIIDGYF 366 (636)
T ss_pred eeEecCCcccceeecCCcccccccc---eecchhhhHHh------------ccCCCeeeCccCCcccc--ccchhhhHHH
Confidence 34799999998776542 3345554 45544332221 12356789999998777 5678888888
Q ss_pred HHHHHHHHcc
Q 004418 592 MDVIESLKHK 601 (754)
Q Consensus 592 ~~lve~l~~~ 601 (754)
.+++..+...
T Consensus 367 ~~iL~~~~~~ 376 (636)
T KOG2169|consen 367 LNILQSCQAN 376 (636)
T ss_pred HHHHhhccCC
Confidence 8888777664
No 270
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=28.70 E-value=77 Score=38.74 Aligned_cols=48 Identities=21% Similarity=0.696 Sum_probs=36.7
Q ss_pred cCCcccccCC--CCCCCeecCCCCc-----chhhhHHhhhcc-CCccccccccccC
Q 004418 142 GSLNCSFCMQ--LPERPVTTPCGHN-----FCLKCFQKWIGQ-GKRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~--~~~~Pv~l~CgH~-----FC~~Ci~~~~~~-~~~~CP~CR~~~~ 189 (754)
+...|-||.. .-.+|..-||..+ ....|+.+|+.. +...|-+|...+.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 4568999974 4557777788764 588999999985 4578999998763
No 271
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=28.55 E-value=37 Score=40.17 Aligned_cols=48 Identities=27% Similarity=0.547 Sum_probs=34.9
Q ss_pred ccccccCC-CCCCCceecCCCCCcccccCCCCCCCccccCC--cccCCCCCCC
Q 004418 14 QCMRCKVK-PRPEETITCSTCVTPWHVACLTKPPETLASSL--SWLCPDCSGV 63 (754)
Q Consensus 14 ~c~~c~~~-~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~--~w~cp~cs~~ 63 (754)
+|-.|... ......|.|.-|.+|||.-|.. |....+.+ -|.||.-|..
T Consensus 394 ~~~~c~~~~~~s~~vl~c~ye~s~~h~dc~~--~~~~~ps~ss~~k~p~~s~~ 444 (613)
T KOG4299|consen 394 LCGRCSKTQTESVVVLDCQYEQSPEHPDCKD--DSKALPSLSSKWKCPRVSPY 444 (613)
T ss_pred hhcccCcchhhhhhhhccccccCCCCccccc--hhhhCCCCcccccCCCCCCC
Confidence 57777553 3456669999999999999993 44444444 5699998854
No 272
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.77 E-value=68 Score=34.02 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=35.7
Q ss_pred ccCCcccccCCCCCC----CeecCCCCcchhhhHHhhhccCCccccccccccCcC
Q 004418 141 DGSLNCSFCMQLPER----PVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPK 191 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~----Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~ 191 (754)
+..+.|||-.-.|.. -+.-.|||.|-..-+.+.- ...|++|.+.+...
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQED 160 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCccccc
Confidence 467899987654443 3445999999988877654 45899999998764
No 273
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=27.60 E-value=44 Score=23.45 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=22.1
Q ss_pred ccccccCCCCCCCceecCCCCCcccccC
Q 004418 14 QCMRCKVKPRPEETITCSTCVTPWHVAC 41 (754)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~c 41 (754)
.|-+|++.......-+|..|..-.|+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 4778977554433899999999999988
No 274
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=27.26 E-value=34 Score=28.21 Aligned_cols=50 Identities=28% Similarity=0.617 Sum_probs=39.5
Q ss_pred cccccccCCC-----CCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 13 EQCMRCKVKP-----RPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 13 ~~c~~c~~~~-----~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
..|.+||... .+..--+|-.|-+--.--|--+|...++...+|.|-.|-.
T Consensus 3 ~~CPlCkt~~n~gsk~~pNyntCT~Ck~~VCnlCGFNP~Phl~E~~eWLCLnCQ~ 57 (61)
T PF05715_consen 3 SLCPLCKTTLNVGSKDPPNYNTCTECKSQVCNLCGFNPTPHLTEVKEWLCLNCQM 57 (61)
T ss_pred ccCCcccchhhcCCCCCCCccHHHHHhhhhhcccCCCCCccccccceeeeecchh
Confidence 4699998732 3344478888988888889888977888889999999964
No 275
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=27.25 E-value=31 Score=31.46 Aligned_cols=33 Identities=30% Similarity=0.647 Sum_probs=27.0
Q ss_pred CcccccccCCCCCCCceecCC--CCCcccccCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCST--CVTPWHVACLTKPP 46 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~--c~~~~h~~cl~~~p 46 (754)
-..|.+|+.. .-..+.|.. |.+-||++|...-.
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHCC
Confidence 5689999987 345789999 99999999987433
No 276
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=27.14 E-value=51 Score=30.78 Aligned_cols=30 Identities=27% Similarity=0.600 Sum_probs=19.5
Q ss_pred hcccccccccccc---C-c-eecCCCChhhHHhHH
Q 004418 514 KEFSCLICRQVMN---L-P-ITTPCAHNFCKSCLE 543 (754)
Q Consensus 514 e~l~CpIC~~~~~---~-P-v~lpCgHsFC~~Cl~ 543 (754)
.+-.|.+|...|. + . +-..|.|.+|..|-.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~ 87 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGV 87 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCC
Confidence 3567999987543 2 2 334899999999954
No 277
>PRK04023 DNA polymerase II large subunit; Validated
Probab=27.12 E-value=50 Score=41.38 Aligned_cols=44 Identities=16% Similarity=0.330 Sum_probs=29.7
Q ss_pred ccccccccccccCceecCCCC-----hhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLPITTPCAH-----NFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~lpCgH-----sFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
...|+-|.........-.||. .||..|-.. .....||.|...+.
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~---------------------~~~y~CPKCG~El~ 674 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE---------------------VEEDECEKCGREPT 674 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCccccCc---------------------CCCCcCCCCCCCCC
Confidence 467999998864333334884 599999221 12357999999887
No 278
>PF14353 CpXC: CpXC protein
Probab=26.96 E-value=51 Score=31.04 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=10.9
Q ss_pred CcccCCCCCCCcc
Q 004418 567 NVMQCPSCPTDIS 579 (754)
Q Consensus 567 ~~~~CP~CR~~v~ 579 (754)
..++||.|...+.
T Consensus 37 ~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 37 FSFTCPSCGHKFR 49 (128)
T ss_pred CEEECCCCCCcee
Confidence 4679999999876
No 279
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=26.88 E-value=42 Score=36.87 Aligned_cols=46 Identities=28% Similarity=0.722 Sum_probs=33.5
Q ss_pred ccccccccccccC--c--eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNL--P--ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~--P--v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.-.||||.+.+.. - +-.||+|..|..|+....... ..||.||+...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~-------------------~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGD-------------------GRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccC-------------------CCCCccCCccc
Confidence 3579999997632 2 224799999999988765543 37999997665
No 280
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=26.43 E-value=63 Score=32.03 Aligned_cols=48 Identities=23% Similarity=0.489 Sum_probs=34.5
Q ss_pred hccccccccccccCceecCCC--C---hhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITTPCA--H---NFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCg--H---sFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+-.|=||.+-.. +...||. . ..-+.|+++|.+.+. ...|+.|...+.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~-----------------~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSK-----------------NKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCC-----------------CCcccccCCeEE
Confidence 4668999998754 4445766 2 124679999998653 558999999876
No 281
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.34 E-value=30 Score=37.24 Aligned_cols=41 Identities=29% Similarity=0.702 Sum_probs=25.0
Q ss_pred CCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 533 CAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 533 CgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
|..-.|.+||-+||.+..... .| ..-......||.||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v-----~r-~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNV-----YR-YEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccch-----hH-HHHHhcCCCCcchhhceE
Confidence 445568899999997654110 00 001122458999999876
No 282
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=26.09 E-value=52 Score=26.89 Aligned_cols=43 Identities=21% Similarity=0.556 Sum_probs=27.9
Q ss_pred cccccCCCCCCCe--ecCCC--CcchhhhHHhhhccCCccccccccccCc
Q 004418 145 NCSFCMQLPERPV--TTPCG--HNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 145 ~C~IC~~~~~~Pv--~l~Cg--H~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.|-.|-..+..-. ..-|. .+||..|....+.. .||.|.-.+..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~---~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLNG---VCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcC---cCcCCCCcccc
Confidence 4666655544211 22343 36999999987744 89999887765
No 283
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=26.00 E-value=12 Score=31.10 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=17.0
Q ss_pred cCCcccccCCCCCCCee----cCCCCcchhhhHHhhh
Q 004418 142 GSLNCSFCMQLPERPVT----TPCGHNFCLKCFQKWI 174 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~----l~CgH~FC~~Ci~~~~ 174 (754)
+...|.+|...|.--.. -.||+.||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 34589999988842111 3799999999987654
No 284
>PF15616 TerY-C: TerY-C metal binding domain
Probab=25.94 E-value=40 Score=32.38 Aligned_cols=47 Identities=30% Similarity=0.569 Sum_probs=35.5
Q ss_pred HHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
...|.....||-|-..+.-.+- .||+.||.. .....+||-|......
T Consensus 71 tseL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~------g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 71 TSELIGAPGCPHCGNQYAFAVC-GCGKLFCID------GEGEVTCPWCGNEGSF 117 (131)
T ss_pred hHHhcCCCCCCCCcChhcEEEe-cCCCEEEeC------CCCCEECCCCCCeeee
Confidence 4566778999999998766555 899999953 2336799999887653
No 285
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=25.34 E-value=41 Score=36.11 Aligned_cols=76 Identities=21% Similarity=0.472 Sum_probs=46.7
Q ss_pred cCCcccccCCCCCC---------CeecCCCCcchhhhHHh-hhcc---------CCccccccccccCcCccCCCCcchHH
Q 004418 142 GSLNCSFCMQLPER---------PVTTPCGHNFCLKCFQK-WIGQ---------GKRTCAKCRHIIPPKMASQPRINSAL 202 (754)
Q Consensus 142 ~~l~C~IC~~~~~~---------Pv~l~CgH~FC~~Ci~~-~~~~---------~~~~CP~CR~~~~~~~~~~~~~n~~L 202 (754)
..+.|.+|-..+.. --+|+|--.||.+=+.+ |+-+ ..+.||.|++.|..+ .+|
T Consensus 160 ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR--------SNL 231 (279)
T KOG2462|consen 160 KAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR--------SNL 231 (279)
T ss_pred ccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch--------HHH
Confidence 46789999877662 12358888888877754 6543 357999999988653 234
Q ss_pred HHHHHHHHhhcccCCCCcccccc
Q 004418 203 VTAIRMAKLSKSNLAAVPTKVYH 225 (754)
Q Consensus 203 ~~lie~~k~~~~~~~~~~~k~~~ 225 (754)
+.-+...--.+...+..+.|.+.
T Consensus 232 RAHmQTHS~~K~~qC~~C~KsFs 254 (279)
T KOG2462|consen 232 RAHMQTHSDVKKHQCPRCGKSFA 254 (279)
T ss_pred HHHHHhhcCCccccCcchhhHHH
Confidence 44444444444444444444433
No 286
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=25.14 E-value=53 Score=25.71 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=28.1
Q ss_pred CCcccccccCCC--CCCCceecCCCCCcccccCCCCCCC
Q 004418 11 LDEQCMRCKVKP--RPEETITCSTCVTPWHVACLTKPPE 47 (754)
Q Consensus 11 ~~~~c~~c~~~~--~~~~~l~c~~c~~~~h~~cl~~~p~ 47 (754)
....|.+|+..- ..-..+.|..|..-.|-.|+..-|.
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~~ 48 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVPP 48 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSSS
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcCC
Confidence 467899998844 5566799999999999999996553
No 287
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=24.93 E-value=49 Score=36.05 Aligned_cols=48 Identities=15% Similarity=-0.102 Sum_probs=37.2
Q ss_pred hcccCCcccccCCCCCCCeecCCCCc-chhhhHHhhhccCCccccccccccC
Q 004418 139 LLDGSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
.|-..+.|..|..-+...+..+|+|+ ||..|..- .....||.|....+
T Consensus 339 ~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~---s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 339 GLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA---SASPTSSTCDHNDH 387 (394)
T ss_pred cchhhcccccccCceeeeEeecCCcccChhhhhhc---ccCCccccccccce
Confidence 34567889999988877777799998 89999873 22568999987654
No 288
>PF12773 DZR: Double zinc ribbon
Probab=24.67 E-value=59 Score=25.22 Aligned_cols=29 Identities=31% Similarity=0.688 Sum_probs=18.7
Q ss_pred CCcchhhhHHhhh--ccCCccccccccccCc
Q 004418 162 GHNFCLKCFQKWI--GQGKRTCAKCRHIIPP 190 (754)
Q Consensus 162 gH~FC~~Ci~~~~--~~~~~~CP~CR~~~~~ 190 (754)
+-.||..|-.... ......||.|...+..
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAENPP 41 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCCCcC
Confidence 4557777776655 3335678888876643
No 289
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=24.56 E-value=40 Score=28.43 Aligned_cols=14 Identities=29% Similarity=0.876 Sum_probs=9.9
Q ss_pred hhhHHhHHHHHcCC
Q 004418 536 NFCKSCLEGAFAGK 549 (754)
Q Consensus 536 sFC~~Cl~~~~~~~ 549 (754)
-||+.||.+|+...
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999998754
No 290
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=24.14 E-value=28 Score=32.08 Aligned_cols=49 Identities=29% Similarity=0.755 Sum_probs=33.6
Q ss_pred cccccccCCCCCCCceec------CCC---CCcccccCCCCC----CCccccCCcccCCCCCC
Q 004418 13 EQCMRCKVKPRPEETITC------STC---VTPWHVACLTKP----PETLASSLSWLCPDCSG 62 (754)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c------~~c---~~~~h~~cl~~~----p~~~~~~~~w~cp~cs~ 62 (754)
..|-.|+.+..+.- ..| ..| .--|.-.||... +.......+|.||-|-+
T Consensus 8 ~~CHqCrqKt~~~~-~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFK-TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCc-eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 35788888776544 356 666 778999998621 12233467899999987
No 291
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=23.70 E-value=43 Score=24.82 Aligned_cols=28 Identities=29% Similarity=0.926 Sum_probs=20.3
Q ss_pred eecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 28 ITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 28 l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
+.|..|...||+. .. ||. .+..|..|.+
T Consensus 2 r~C~~Cg~~Yh~~-~~-pP~-----~~~~Cd~cg~ 29 (36)
T PF05191_consen 2 RICPKCGRIYHIE-FN-PPK-----VEGVCDNCGG 29 (36)
T ss_dssp EEETTTTEEEETT-TB---S-----STTBCTTTTE
T ss_pred cCcCCCCCccccc-cC-CCC-----CCCccCCCCC
Confidence 5799999999987 33 553 3678998864
No 292
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=22.28 E-value=74 Score=25.58 Aligned_cols=25 Identities=28% Similarity=0.905 Sum_probs=13.7
Q ss_pred CCCCcchhhhHHhhhccCCccccccc
Q 004418 160 PCGHNFCLKCFQKWIGQGKRTCAKCR 185 (754)
Q Consensus 160 ~CgH~FC~~Ci~~~~~~~~~~CP~CR 185 (754)
.|++.||..|=. .+......||-|.
T Consensus 26 ~C~~~FC~dCD~-fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDV-FIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHH-TTTTTS-SSSTT-
T ss_pred CCCCccccCcCh-hhhccccCCcCCC
Confidence 799999999943 2333356899883
No 293
>PRK04023 DNA polymerase II large subunit; Validated
Probab=22.15 E-value=77 Score=39.87 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=39.7
Q ss_pred cCCcccccCCCCCCCeecCCCC-----cchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHH
Q 004418 142 GSLNCSFCMQLPERPVTTPCGH-----NFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAK 210 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l~CgH-----~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k 210 (754)
....|+-|.........-.||. .||..|-... . ...||.|.......-...+.....+..+.+.+.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~--~-~y~CPKCG~El~~~s~~~i~l~~~~~~A~~~lg 695 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEV--E-EDECEKCGREPTPYSKRKIDLKELYDRALENLG 695 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCcC--C-CCcCCCCCCCCCccceEEecHHHHHHHHHHHhC
Confidence 4568999988764433446884 4999994332 2 357999998876532233344444444444443
No 294
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.76 E-value=47 Score=40.97 Aligned_cols=39 Identities=28% Similarity=0.507 Sum_probs=30.5
Q ss_pred hhhcccccccccccc-Cce-ecCCCChhhHHhHHHHHcCCc
Q 004418 512 LLKEFSCLICRQVMN-LPI-TTPCAHNFCKSCLEGAFAGKT 550 (754)
Q Consensus 512 L~e~l~CpIC~~~~~-~Pv-~lpCgHsFC~~Cl~~~~~~~~ 550 (754)
++..-.|.+|...+. .|. ..||||.|-+.||.+......
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~~~ 854 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLSLL 854 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHccc
Confidence 455678999998655 474 569999999999998876543
No 295
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.16 E-value=1.2e+02 Score=29.26 Aligned_cols=25 Identities=32% Similarity=0.881 Sum_probs=16.8
Q ss_pred cccCCcccccCCC-CCCCeecCCCCcchhhh
Q 004418 140 LDGSLNCSFCMQL-PERPVTTPCGHNFCLKC 169 (754)
Q Consensus 140 l~~~l~C~IC~~~-~~~Pv~l~CgH~FC~~C 169 (754)
..++.+|-||+.. |.+ .|||+ |..|
T Consensus 62 v~ddatC~IC~KTKFAD----G~GH~-C~YC 87 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFAD----GCGHN-CSYC 87 (169)
T ss_pred cCcCcchhhhhhccccc----ccCcc-cchh
Confidence 3567899999864 444 68884 4444
No 296
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=20.71 E-value=52 Score=25.91 Aligned_cols=9 Identities=44% Similarity=1.667 Sum_probs=6.1
Q ss_pred cccCCCCCC
Q 004418 54 SWLCPDCSG 62 (754)
Q Consensus 54 ~w~cp~cs~ 62 (754)
+|.||.|..
T Consensus 34 ~w~CP~C~a 42 (47)
T PF00301_consen 34 DWVCPVCGA 42 (47)
T ss_dssp T-B-TTTSS
T ss_pred CCcCcCCCC
Confidence 799999974
Done!