Query 004418
Match_columns 754
No_of_seqs 823 out of 3557
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 00:37:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oln_A E3 ubiquitin-protein li 100.0 3.2E-65 1.1E-69 511.4 16.8 185 240-434 4-207 (231)
2 3fde_A E3 ubiquitin-protein li 100.0 1E-62 3.4E-67 490.0 14.0 191 259-460 2-210 (212)
3 2pb7_A E3 ubiquitin-protein li 100.0 9.9E-62 3.4E-66 489.2 14.0 196 254-460 4-218 (239)
4 3q0b_X Histone-lysine N-methyl 100.0 5.3E-56 1.8E-60 432.2 15.6 156 263-431 2-163 (167)
5 3ztg_A E3 ubiquitin-protein li 99.4 1.6E-13 5.3E-18 120.8 6.1 76 511-604 9-85 (92)
6 1jm7_B BARD1, BRCA1-associated 99.4 1.4E-13 4.6E-18 126.9 5.5 93 134-232 13-113 (117)
7 1t1h_A Gspef-atpub14, armadill 99.4 1.8E-13 6.1E-18 116.7 5.4 71 140-213 5-75 (78)
8 1z6u_A NP95-like ring finger p 99.4 4.2E-13 1.4E-17 129.3 8.3 97 486-601 38-145 (150)
9 1t1h_A Gspef-atpub14, armadill 99.4 1.7E-13 5.7E-18 116.8 4.5 72 511-602 4-75 (78)
10 3fl2_A E3 ubiquitin-protein li 99.4 5E-13 1.7E-17 124.3 7.8 76 507-601 44-119 (124)
11 3fl2_A E3 ubiquitin-protein li 99.4 5.3E-13 1.8E-17 124.1 7.4 75 135-211 44-118 (124)
12 2kr4_A Ubiquitin conjugation f 99.4 4.3E-13 1.5E-17 116.8 5.1 71 511-602 10-80 (85)
13 2kre_A Ubiquitin conjugation f 99.3 6.9E-13 2.4E-17 119.1 6.0 71 512-603 26-96 (100)
14 3lrq_A E3 ubiquitin-protein li 99.3 5.4E-13 1.8E-17 119.6 5.2 78 507-604 14-92 (100)
15 1wgm_A Ubiquitin conjugation f 99.3 1.1E-12 3.8E-17 117.4 6.7 72 511-603 18-90 (98)
16 3ztg_A E3 ubiquitin-protein li 99.3 5.2E-13 1.8E-17 117.4 4.5 75 138-214 8-84 (92)
17 2y43_A E3 ubiquitin-protein li 99.3 7.3E-13 2.5E-17 118.2 5.5 76 509-605 16-92 (99)
18 2yu4_A E3 SUMO-protein ligase 99.3 1E-12 3.6E-17 116.5 6.2 77 512-603 4-84 (94)
19 3lrq_A E3 ubiquitin-protein li 99.3 5E-13 1.7E-17 119.8 4.1 77 135-214 14-91 (100)
20 1wgm_A Ubiquitin conjugation f 99.3 1.2E-12 4.1E-17 117.1 5.7 73 138-214 17-90 (98)
21 2kr4_A Ubiquitin conjugation f 99.3 9.6E-13 3.3E-17 114.6 4.4 73 138-214 9-81 (85)
22 4ayc_A E3 ubiquitin-protein li 99.3 1.4E-12 4.9E-17 123.6 5.9 69 507-598 45-113 (138)
23 2y43_A E3 ubiquitin-protein li 99.3 1.7E-12 5.8E-17 115.8 5.0 75 136-214 15-90 (99)
24 1z6u_A NP95-like ring finger p 99.3 4.4E-12 1.5E-16 122.1 8.1 75 135-211 70-144 (150)
25 2kre_A Ubiquitin conjugation f 99.3 2.2E-12 7.6E-17 115.8 5.1 73 138-214 24-96 (100)
26 1jm7_B BARD1, BRCA1-associated 99.3 2.6E-12 9E-17 118.3 4.8 75 506-603 13-88 (117)
27 2ckl_A Polycomb group ring fin 99.3 5E-12 1.7E-16 114.7 6.3 73 509-600 9-84 (108)
28 4ayc_A E3 ubiquitin-protein li 99.2 9.9E-12 3.4E-16 117.8 7.7 67 137-209 47-113 (138)
29 2egp_A Tripartite motif-contai 99.2 4.4E-13 1.5E-17 114.2 -2.4 65 137-204 6-76 (79)
30 1jm7_A BRCA1, breast cancer ty 99.2 5.4E-12 1.9E-16 114.7 4.2 74 508-599 14-87 (112)
31 2ckl_A Polycomb group ring fin 99.2 1.1E-11 3.7E-16 112.4 5.2 74 137-211 9-84 (108)
32 2egp_A Tripartite motif-contai 99.2 4.2E-13 1.4E-17 114.3 -4.3 71 509-593 6-76 (79)
33 2csy_A Zinc finger protein 183 99.2 1.4E-11 4.7E-16 105.8 5.1 66 512-602 12-77 (81)
34 2ecw_A Tripartite motif-contai 99.2 2.4E-12 8.1E-17 110.8 0.1 66 137-205 13-83 (85)
35 2ecw_A Tripartite motif-contai 99.2 3E-12 1E-16 110.1 0.1 70 510-594 14-83 (85)
36 3l11_A E3 ubiquitin-protein li 99.2 8.2E-12 2.8E-16 114.4 2.8 73 511-601 11-88 (115)
37 2ecv_A Tripartite motif-contai 99.2 3.1E-12 1E-16 110.1 -0.1 67 136-205 12-83 (85)
38 1jm7_A BRCA1, breast cancer ty 99.2 1.4E-11 4.8E-16 111.9 4.2 73 136-211 14-88 (112)
39 2yu4_A E3 SUMO-protein ligase 99.2 1.5E-11 5.2E-16 109.0 4.2 72 140-214 4-84 (94)
40 3l11_A E3 ubiquitin-protein li 99.1 9.1E-12 3.1E-16 114.1 2.3 71 140-210 12-86 (115)
41 2csy_A Zinc finger protein 183 99.1 2.1E-11 7.1E-16 104.7 4.1 58 140-202 12-69 (81)
42 2f42_A STIP1 homology and U-bo 99.1 3.8E-11 1.3E-15 118.4 6.5 72 511-602 102-173 (179)
43 2ckl_B Ubiquitin ligase protei 99.1 2.9E-11 1E-15 117.8 4.8 74 510-602 49-123 (165)
44 2djb_A Polycomb group ring fin 99.1 2.3E-11 7.9E-16 102.1 3.5 53 137-190 9-62 (72)
45 2yur_A Retinoblastoma-binding 99.1 2.7E-11 9.2E-16 102.4 3.4 52 511-579 11-63 (74)
46 2c2l_A CHIP, carboxy terminus 99.1 4.2E-11 1.4E-15 125.4 5.3 70 513-602 206-275 (281)
47 2ecy_A TNF receptor-associated 99.1 2.2E-11 7.6E-16 100.4 2.4 54 137-190 9-62 (66)
48 2ckl_B Ubiquitin ligase protei 99.1 2.6E-11 8.8E-16 118.2 3.2 75 138-214 49-124 (165)
49 3hct_A TNF receptor-associated 99.1 1.9E-11 6.5E-16 112.7 2.0 74 509-602 12-85 (118)
50 2c2l_A CHIP, carboxy terminus 99.1 4.7E-11 1.6E-15 125.0 5.3 71 140-213 205-275 (281)
51 2ecv_A Tripartite motif-contai 99.1 4.5E-12 1.6E-16 109.0 -2.1 69 510-593 14-82 (85)
52 2djb_A Polycomb group ring fin 99.1 4.8E-11 1.6E-15 100.1 4.1 51 510-579 10-61 (72)
53 2yur_A Retinoblastoma-binding 99.1 3.4E-11 1.1E-15 101.8 2.9 54 137-190 9-64 (74)
54 2ysl_A Tripartite motif-contai 99.1 4.6E-11 1.6E-15 100.1 3.5 54 137-190 14-69 (73)
55 2ecy_A TNF receptor-associated 99.1 2.8E-11 9.5E-16 99.8 2.0 52 510-579 10-61 (66)
56 2f42_A STIP1 homology and U-bo 99.1 7.1E-11 2.4E-15 116.5 5.2 71 140-213 103-173 (179)
57 2ct2_A Tripartite motif protei 99.1 3.3E-11 1.1E-15 104.6 2.2 64 138-201 10-79 (88)
58 2ysl_A Tripartite motif-contai 99.0 6.7E-11 2.3E-15 99.1 3.4 54 510-579 15-68 (73)
59 3hct_A TNF receptor-associated 99.0 3.9E-11 1.3E-15 110.6 1.8 71 136-209 11-81 (118)
60 2d8t_A Dactylidin, ring finger 99.0 5.8E-11 2E-15 99.4 1.9 49 141-190 13-61 (71)
61 2ysj_A Tripartite motif-contai 99.0 8.3E-11 2.8E-15 95.9 2.4 48 137-184 14-63 (63)
62 1rmd_A RAG1; V(D)J recombinati 99.0 9.4E-11 3.2E-15 107.5 2.7 68 138-207 18-85 (116)
63 1rmd_A RAG1; V(D)J recombinati 99.0 2E-10 6.8E-15 105.3 4.9 71 510-600 18-89 (116)
64 1f62_A Transcription factor WS 99.0 1.5E-10 5E-15 91.0 3.4 49 13-62 1-49 (51)
65 2ct2_A Tripartite motif protei 99.0 6.4E-11 2.2E-15 102.7 1.3 53 511-579 11-67 (88)
66 2ysj_A Tripartite motif-contai 99.0 1.2E-10 4.3E-15 94.8 2.9 39 510-548 15-53 (63)
67 2ecj_A Tripartite motif-contai 99.0 1.7E-10 5.9E-15 92.1 3.1 48 137-184 9-58 (58)
68 2e6s_A E3 ubiquitin-protein li 99.0 4.1E-10 1.4E-14 96.0 5.3 54 7-62 22-76 (77)
69 1g25_A CDK-activating kinase a 99.0 1.9E-10 6.5E-15 94.4 2.8 49 142-190 2-55 (65)
70 2lri_C Autoimmune regulator; Z 99.0 5.6E-10 1.9E-14 92.4 5.4 51 12-66 12-62 (66)
71 3htk_C E3 SUMO-protein ligase 99.0 2.4E-10 8.1E-15 118.1 3.7 72 512-602 178-252 (267)
72 3knv_A TNF receptor-associated 98.9 1E-10 3.5E-15 111.4 0.8 74 509-600 25-105 (141)
73 2d8t_A Dactylidin, ring finger 98.9 2.1E-10 7.2E-15 95.9 2.5 48 513-579 13-60 (71)
74 3hcs_A TNF receptor-associated 98.9 1.7E-10 6E-15 112.8 1.9 74 508-601 11-84 (170)
75 1g25_A CDK-activating kinase a 98.9 4.1E-10 1.4E-14 92.4 3.9 48 514-579 2-54 (65)
76 3knv_A TNF receptor-associated 98.9 2.7E-10 9.1E-15 108.5 2.5 53 137-189 25-77 (141)
77 3htk_C E3 SUMO-protein ligase 98.9 3.8E-10 1.3E-14 116.6 3.8 73 138-213 176-252 (267)
78 2ea6_A Ring finger protein 4; 98.9 1.7E-10 5.7E-15 95.3 0.7 51 139-190 11-68 (69)
79 3ng2_A RNF4, snurf, ring finge 98.9 2.9E-10 9.9E-15 94.6 2.1 50 140-190 7-63 (71)
80 3ng2_A RNF4, snurf, ring finge 98.9 3.1E-10 1.1E-14 94.4 2.1 49 512-579 7-62 (71)
81 2ecj_A Tripartite motif-contai 98.9 5.7E-10 1.9E-14 89.0 3.1 39 510-548 10-48 (58)
82 2ect_A Ring finger protein 126 98.9 8.4E-10 2.9E-14 93.7 4.0 51 139-190 11-64 (78)
83 2ea6_A Ring finger protein 4; 98.9 4.6E-10 1.6E-14 92.6 2.1 50 511-579 11-67 (69)
84 1iym_A EL5; ring-H2 finger, ub 98.9 1.2E-09 4E-14 86.4 4.4 49 140-189 2-54 (55)
85 1e4u_A Transcriptional repress 98.9 1E-09 3.4E-14 94.0 4.1 53 138-190 6-62 (78)
86 3asl_A E3 ubiquitin-protein li 98.9 1E-09 3.6E-14 91.9 3.8 53 8-62 15-68 (70)
87 2e6r_A Jumonji/ARID domain-con 98.9 4.6E-10 1.6E-14 99.1 1.6 55 7-62 11-65 (92)
88 3hcs_A TNF receptor-associated 98.9 4.6E-10 1.6E-14 109.8 1.7 71 136-209 11-81 (170)
89 1e4u_A Transcriptional repress 98.9 9.2E-10 3.1E-14 94.2 3.4 52 510-579 6-61 (78)
90 4ic3_A E3 ubiquitin-protein li 98.8 8.3E-10 2.8E-14 93.3 2.8 51 135-190 16-67 (74)
91 1mm2_A MI2-beta; PHD, zinc fin 98.8 2.7E-09 9.3E-14 86.9 5.4 48 11-62 8-55 (61)
92 1bor_A Transcription factor PM 98.8 4.3E-10 1.5E-14 89.9 0.7 45 513-579 4-48 (56)
93 2ecn_A Ring finger protein 141 98.8 5.4E-10 1.9E-14 92.9 1.2 51 138-190 10-60 (70)
94 1bor_A Transcription factor PM 98.8 1.1E-09 3.7E-14 87.5 2.7 45 142-190 5-49 (56)
95 2xeu_A Ring finger protein 4; 98.8 6E-10 2E-14 90.5 0.9 48 142-190 2-56 (64)
96 2l5u_A Chromodomain-helicase-D 98.8 1.5E-09 5.3E-14 88.4 3.2 54 5-62 4-57 (61)
97 2xeu_A Ring finger protein 4; 98.8 1E-09 3.6E-14 89.1 2.0 47 514-579 2-55 (64)
98 2ecm_A Ring finger and CHY zin 98.8 1.9E-09 6.6E-14 85.0 3.5 47 142-189 4-54 (55)
99 1fp0_A KAP-1 corepressor; PHD 98.8 8.4E-09 2.9E-13 89.7 7.6 55 6-64 19-73 (88)
100 4ic3_A E3 ubiquitin-protein li 98.8 2E-09 6.7E-14 91.0 3.3 49 509-580 18-67 (74)
101 2ect_A Ring finger protein 126 98.8 2E-09 6.8E-14 91.4 3.3 49 512-579 12-63 (78)
102 1chc_A Equine herpes virus-1 r 98.8 2.1E-09 7.1E-14 88.7 3.4 48 142-190 4-52 (68)
103 2kiz_A E3 ubiquitin-protein li 98.8 2E-09 6.7E-14 89.2 3.2 49 141-190 12-63 (69)
104 1chc_A Equine herpes virus-1 r 98.8 1.7E-09 5.9E-14 89.2 2.8 48 514-580 4-52 (68)
105 3shb_A E3 ubiquitin-protein li 98.8 2.8E-09 9.6E-14 90.8 3.7 53 8-62 23-76 (77)
106 1iym_A EL5; ring-H2 finger, ub 98.8 1.9E-09 6.4E-14 85.2 2.5 49 512-579 2-54 (55)
107 2ecg_A Baculoviral IAP repeat- 98.8 2.8E-09 9.5E-14 90.2 3.5 52 134-190 16-68 (75)
108 2ep4_A Ring finger protein 24; 98.8 1.7E-09 5.8E-14 90.9 2.0 51 139-190 11-64 (74)
109 2l0b_A E3 ubiquitin-protein li 98.8 2.6E-09 8.8E-14 93.9 2.9 49 141-190 38-89 (91)
110 2ecm_A Ring finger and CHY zin 98.7 3E-09 1E-13 83.9 2.6 47 514-579 4-54 (55)
111 2ecg_A Baculoviral IAP repeat- 98.7 4.6E-09 1.6E-13 88.9 3.8 49 509-580 19-68 (75)
112 1x4j_A Ring finger protein 38; 98.7 2.7E-09 9.2E-14 90.0 2.0 49 141-190 21-72 (75)
113 2kiz_A E3 ubiquitin-protein li 98.7 4.5E-09 1.5E-13 87.0 3.1 48 513-579 12-62 (69)
114 1xwh_A Autoimmune regulator; P 98.7 4.7E-09 1.6E-13 86.9 3.1 50 10-63 6-55 (66)
115 2yql_A PHD finger protein 21A; 98.7 4E-09 1.4E-13 84.4 2.5 47 11-61 8-54 (56)
116 2yho_A E3 ubiquitin-protein li 98.7 3.2E-09 1.1E-13 91.0 1.8 64 136-204 11-75 (79)
117 3ask_A E3 ubiquitin-protein li 98.7 6.1E-09 2.1E-13 105.6 4.0 52 9-62 172-224 (226)
118 2puy_A PHD finger protein 21A; 98.7 4.6E-09 1.6E-13 85.3 2.3 47 11-61 4-50 (60)
119 2l0b_A E3 ubiquitin-protein li 98.7 5.7E-09 2E-13 91.6 3.0 48 513-579 38-88 (91)
120 2ecn_A Ring finger protein 141 98.7 1.2E-09 4.1E-14 90.8 -1.4 49 511-579 11-59 (70)
121 4ap4_A E3 ubiquitin ligase RNF 98.7 4E-09 1.4E-13 98.0 1.7 49 141-190 5-60 (133)
122 1v87_A Deltex protein 2; ring- 98.7 1.1E-08 3.6E-13 93.3 4.2 48 143-190 25-94 (114)
123 2ep4_A Ring finger protein 24; 98.6 7.4E-09 2.5E-13 86.9 2.4 50 512-580 12-64 (74)
124 1wev_A Riken cDNA 1110020M19; 98.6 7.2E-09 2.5E-13 90.7 2.3 52 10-62 14-71 (88)
125 1x4j_A Ring finger protein 38; 98.6 6.2E-09 2.1E-13 87.8 1.7 47 514-579 22-71 (75)
126 4ap4_A E3 ubiquitin ligase RNF 98.6 9E-09 3.1E-13 95.5 2.7 48 513-579 5-59 (133)
127 2yt5_A Metal-response element- 98.6 1.3E-08 4.3E-13 84.2 1.8 52 11-63 5-61 (66)
128 2kwj_A Zinc finger protein DPF 98.6 1.5E-08 5.1E-13 93.0 2.4 48 13-61 59-106 (114)
129 2yho_A E3 ubiquitin-protein li 98.6 1.1E-08 3.7E-13 87.7 1.1 49 509-580 12-61 (79)
130 1v87_A Deltex protein 2; ring- 98.5 3E-08 1E-12 90.3 3.6 51 515-579 25-93 (114)
131 2ecl_A Ring-box protein 2; RNF 98.5 4.2E-08 1.4E-12 84.3 3.9 48 142-190 14-76 (81)
132 3t6p_A Baculoviral IAP repeat- 98.5 8.1E-08 2.8E-12 104.2 6.5 53 133-190 285-338 (345)
133 2y1n_A E3 ubiquitin-protein li 98.5 4.9E-08 1.7E-12 106.8 4.2 52 139-190 328-379 (389)
134 2ysm_A Myeloid/lymphoid or mix 98.5 3.6E-08 1.2E-12 89.9 2.3 53 9-62 51-103 (111)
135 1wim_A KIAA0161 protein; ring 98.4 2.4E-08 8.1E-13 88.1 0.2 55 514-579 4-65 (94)
136 2vje_A E3 ubiquitin-protein li 98.4 6E-08 2E-12 79.6 2.6 48 142-190 7-57 (64)
137 2ku3_A Bromodomain-containing 98.4 3.5E-08 1.2E-12 82.8 1.1 51 9-62 13-65 (71)
138 2l43_A N-teminal domain from h 98.4 2.4E-08 8.3E-13 87.3 0.1 50 10-62 23-74 (88)
139 2y1n_A E3 ubiquitin-protein li 98.4 1E-07 3.5E-12 104.3 4.8 51 511-579 328-378 (389)
140 3v43_A Histone acetyltransfera 98.4 1.5E-07 5.1E-12 86.0 4.5 52 9-61 58-110 (112)
141 2ea5_A Cell growth regulator w 98.4 1.2E-07 4.1E-12 78.8 3.4 44 142-190 14-58 (68)
142 2vje_A E3 ubiquitin-protein li 98.4 1.1E-07 3.7E-12 78.0 2.9 48 514-580 7-57 (64)
143 2vje_B MDM4 protein; proto-onc 98.4 9.9E-08 3.4E-12 78.0 2.4 47 143-190 7-56 (63)
144 3dpl_R Ring-box protein 1; ubi 98.4 2E-07 6.8E-12 84.3 4.3 47 142-189 36-100 (106)
145 2ecl_A Ring-box protein 2; RNF 98.4 1.6E-07 5.5E-12 80.6 3.6 46 515-579 15-75 (81)
146 2vje_B MDM4 protein; proto-onc 98.3 1.7E-07 5.7E-12 76.7 2.9 48 514-580 6-56 (63)
147 2ro1_A Transcription intermedi 98.3 3.1E-07 1E-11 91.6 5.3 49 12-64 2-50 (189)
148 2ysm_A Myeloid/lymphoid or mix 98.3 5.2E-07 1.8E-11 82.1 6.1 50 11-61 6-55 (111)
149 3o36_A Transcription intermedi 98.3 4.3E-07 1.5E-11 90.0 5.4 50 11-64 3-52 (184)
150 3u5n_A E3 ubiquitin-protein li 98.3 2.7E-07 9.3E-12 93.2 3.7 49 11-63 6-54 (207)
151 3t6p_A Baculoviral IAP repeat- 98.3 1.6E-07 5.6E-12 101.8 2.0 49 509-580 289-338 (345)
152 2ea5_A Cell growth regulator w 98.3 2E-07 7E-12 77.4 2.1 44 514-580 14-58 (68)
153 2bay_A PRE-mRNA splicing facto 98.3 2.4E-07 8.3E-12 75.3 2.4 46 515-579 3-49 (61)
154 1wim_A KIAA0161 protein; ring 98.3 2.5E-07 8.5E-12 81.5 2.0 67 142-212 4-84 (94)
155 2bay_A PRE-mRNA splicing facto 98.2 4.9E-07 1.7E-11 73.5 2.0 47 143-190 3-50 (61)
156 3dpl_R Ring-box protein 1; ubi 98.2 1.1E-06 3.9E-11 79.3 4.2 46 515-579 37-100 (106)
157 2k16_A Transcription initiatio 98.1 7.5E-07 2.6E-11 75.4 2.7 49 12-61 18-66 (75)
158 4a0k_B E3 ubiquitin-protein li 98.0 9E-07 3.1E-11 81.4 0.2 47 142-189 47-111 (117)
159 2d8s_A Cellular modulator of i 97.9 4.7E-06 1.6E-10 71.5 3.6 49 142-190 14-70 (80)
160 2lv9_A Histone-lysine N-methyl 97.8 1.2E-05 4.2E-10 71.5 4.7 45 14-61 30-74 (98)
161 3v43_A Histone acetyltransfera 97.8 5.7E-06 2E-10 75.4 2.3 51 11-61 4-62 (112)
162 4a0k_B E3 ubiquitin-protein li 97.7 4.7E-06 1.6E-10 76.6 0.0 45 516-579 49-111 (117)
163 1weu_A Inhibitor of growth fam 97.7 6.4E-05 2.2E-09 65.8 6.8 48 11-63 35-85 (91)
164 2d8s_A Cellular modulator of i 97.7 1.6E-05 5.6E-10 68.1 2.6 49 514-579 14-69 (80)
165 2vnf_A ING 4, P29ING4, inhibit 97.6 9.4E-06 3.2E-10 65.7 0.5 46 12-62 10-58 (60)
166 1wen_A Inhibitor of growth fam 97.6 5.4E-05 1.8E-09 63.3 4.6 47 12-63 16-65 (71)
167 4gne_A Histone-lysine N-methyl 97.5 4E-05 1.4E-09 69.1 2.8 46 10-61 13-60 (107)
168 2jmi_A Protein YNG1, ING1 homo 97.5 5E-05 1.7E-09 66.3 3.1 47 10-61 24-74 (90)
169 2g6q_A Inhibitor of growth pro 97.3 3.1E-05 1.1E-09 63.1 0.1 46 12-62 11-59 (62)
170 2ct0_A Non-SMC element 1 homol 97.3 0.00019 6.5E-09 60.5 4.4 49 142-190 14-64 (74)
171 3vk6_A E3 ubiquitin-protein li 97.2 0.00014 4.9E-09 64.0 3.1 46 145-190 3-49 (101)
172 3c6w_A P28ING5, inhibitor of g 97.1 6.9E-05 2.4E-09 60.4 0.2 46 12-62 9-57 (59)
173 2jun_A Midline-1; B-BOX, TRIM, 96.9 0.00093 3.2E-08 59.1 5.4 82 142-242 2-88 (101)
174 1wil_A KIAA1045 protein; ring 96.9 0.00022 7.4E-09 60.6 0.9 50 11-62 14-75 (89)
175 3vk6_A E3 ubiquitin-protein li 96.8 0.00063 2.2E-08 60.0 3.6 45 517-579 3-48 (101)
176 2kwj_A Zinc finger protein DPF 96.8 0.0003 1E-08 64.2 1.3 48 13-61 2-59 (114)
177 1vyx_A ORF K3, K3RING; zinc-bi 96.8 0.00071 2.4E-08 54.6 3.2 49 142-190 5-59 (60)
178 2ct0_A Non-SMC element 1 homol 96.8 0.0014 4.8E-08 55.1 5.0 48 515-579 15-63 (74)
179 1x4i_A Inhibitor of growth pro 96.7 0.00032 1.1E-08 58.5 0.9 45 12-61 6-53 (70)
180 1we9_A PHD finger family prote 96.7 0.00095 3.3E-08 54.3 3.3 53 11-63 5-58 (64)
181 2lbm_A Transcriptional regulat 96.6 0.00044 1.5E-08 65.4 0.7 46 12-61 63-115 (142)
182 3k1l_B Fancl; UBC, ring, RWD, 96.6 0.0006 2.1E-08 72.9 1.6 50 142-191 307-374 (381)
183 3o70_A PHD finger protein 13; 96.1 0.0019 6.6E-08 53.4 1.9 47 13-62 20-66 (68)
184 1vyx_A ORF K3, K3RING; zinc-bi 96.0 0.0032 1.1E-07 50.7 2.5 49 514-579 5-58 (60)
185 1wee_A PHD finger family prote 95.8 0.0023 8E-08 53.4 0.9 49 13-63 17-66 (72)
186 2vpb_A Hpygo1, pygopus homolog 95.7 0.0013 4.6E-08 53.8 -0.8 51 11-61 7-64 (65)
187 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.0047 1.6E-07 54.5 1.8 34 514-547 2-38 (101)
188 3k1l_B Fancl; UBC, ring, RWD, 95.4 0.0031 1E-07 67.5 0.7 56 516-579 309-372 (381)
189 1wep_A PHF8; structural genomi 95.2 0.011 3.9E-07 50.1 3.4 52 14-66 14-66 (79)
190 3m62_A Ubiquitin conjugation f 95.2 0.035 1.2E-06 66.8 8.7 73 138-214 886-959 (968)
191 2xb1_A Pygopus homolog 2, B-ce 95.0 0.0055 1.9E-07 55.0 0.9 53 12-64 3-62 (105)
192 1wew_A DNA-binding family prot 94.9 0.0069 2.4E-07 51.3 1.2 52 12-64 16-73 (78)
193 3m62_A Ubiquitin conjugation f 94.7 0.061 2.1E-06 64.8 8.9 74 510-604 886-960 (968)
194 3o7a_A PHD finger protein 13 v 94.6 0.012 4.1E-07 45.8 1.7 49 12-62 3-51 (52)
195 2ri7_A Nucleosome-remodeling f 94.1 0.0055 1.9E-07 59.7 -1.6 50 12-62 8-58 (174)
196 2kgg_A Histone demethylase jar 94.0 0.021 7.1E-07 44.5 1.9 46 15-61 5-52 (52)
197 2rsd_A E3 SUMO-protein ligase 93.6 0.023 8E-07 46.7 1.6 49 13-62 11-64 (68)
198 1wem_A Death associated transc 93.1 0.011 3.9E-07 49.6 -1.1 48 14-63 18-70 (76)
199 4bbq_A Lysine-specific demethy 92.3 0.055 1.9E-06 49.0 2.3 54 9-63 56-114 (117)
200 3kqi_A GRC5, PHD finger protei 92.2 0.026 9E-07 47.3 0.0 52 12-63 9-61 (75)
201 3lqh_A Histone-lysine N-methyl 91.5 0.06 2.1E-06 53.0 1.7 49 14-63 4-63 (183)
202 3nw0_A Non-structural maintena 91.4 0.19 6.3E-06 51.5 5.3 48 143-190 180-229 (238)
203 3ql9_A Transcriptional regulat 91.2 0.03 1E-06 52.0 -0.8 47 12-62 57-110 (129)
204 3nw0_A Non-structural maintena 89.8 0.29 1E-05 50.0 5.0 48 515-579 180-228 (238)
205 2ko5_A Ring finger protein Z; 89.2 0.23 7.9E-06 43.1 3.1 48 141-191 26-74 (99)
206 3i2d_A E3 SUMO-protein ligase 88.7 0.2 6.8E-06 54.3 2.9 68 512-598 246-316 (371)
207 3pur_A Lysine-specific demethy 86.9 0.28 9.6E-06 55.4 2.9 43 23-65 54-96 (528)
208 3kv5_D JMJC domain-containing 81.5 0.19 6.4E-06 56.8 -1.6 49 14-63 39-88 (488)
209 2ko5_A Ring finger protein Z; 76.3 1.1 3.7E-05 39.0 1.9 45 514-579 27-72 (99)
210 2cs3_A Protein C14ORF4, MY039 75.8 1.4 4.7E-05 37.1 2.4 36 141-176 13-52 (93)
211 4gne_A Histone-lysine N-methyl 75.3 2.2 7.5E-05 38.1 3.8 33 27-62 69-101 (107)
212 3i2d_A E3 SUMO-protein ligase 72.3 2.4 8.1E-05 45.9 3.8 65 139-206 245-313 (371)
213 2ku7_A MLL1 PHD3-CYP33 RRM chi 72.3 1.9 6.5E-05 39.1 2.7 39 27-65 2-46 (140)
214 3kv4_A PHD finger protein 8; e 71.5 0.37 1.3E-05 53.7 -2.8 51 13-63 5-56 (447)
215 4fo9_A E3 SUMO-protein ligase 70.9 3.4 0.00012 44.6 4.6 67 512-597 212-281 (360)
216 2fiy_A Protein FDHE homolog; F 70.3 1.3 4.3E-05 47.1 1.1 40 10-62 180-230 (309)
217 4fo9_A E3 SUMO-protein ligase 67.5 4 0.00014 44.0 4.3 66 139-207 211-280 (360)
218 2cs3_A Protein C14ORF4, MY039 64.6 2.4 8.2E-05 35.7 1.5 36 514-549 14-53 (93)
219 1weq_A PHD finger protein 7; s 64.2 5.1 0.00017 34.3 3.4 35 24-62 43-78 (85)
220 3hna_A Histone-lysine N-methyl 54.4 3.7 0.00013 43.0 1.1 36 446-485 27-63 (287)
221 1weo_A Cellulose synthase, cat 47.5 16 0.00054 31.5 3.7 48 142-189 15-69 (93)
222 3mjh_B Early endosome antigen 46.3 2.9 0.0001 29.6 -0.8 17 514-530 4-20 (34)
223 1weo_A Cellulose synthase, cat 46.2 26 0.0009 30.1 4.9 47 515-579 16-69 (93)
224 2lri_C Autoimmune regulator; Z 39.5 27 0.00093 28.1 3.9 45 142-188 11-60 (66)
225 4bbq_A Lysine-specific demethy 39.1 6.4 0.00022 35.1 0.0 34 13-61 8-41 (117)
226 2lbm_A Transcriptional regulat 39.1 16 0.00056 34.1 2.8 44 143-186 63-116 (142)
227 1zbd_B Rabphilin-3A; G protein 38.7 8.5 0.00029 35.7 0.8 45 142-186 54-106 (134)
228 1wd2_A Ariadne-1 protein homol 38.6 8.2 0.00028 30.7 0.6 35 142-176 5-47 (60)
229 2zet_C Melanophilin; complex, 38.2 14 0.00049 34.9 2.3 46 142-187 67-117 (153)
230 2zet_C Melanophilin; complex, 36.8 33 0.0011 32.4 4.6 57 486-542 15-100 (153)
231 1y02_A CARP2, FYVE-ring finger 34.6 8.5 0.00029 35.0 0.1 46 142-188 18-67 (120)
232 1joc_A EEA1, early endosomal a 34.2 38 0.0013 30.8 4.4 31 143-173 69-103 (125)
233 1zbd_B Rabphilin-3A; G protein 32.6 30 0.001 31.9 3.5 58 486-543 8-88 (134)
234 1v5n_A PDI-like hypothetical p 28.9 16 0.00056 31.2 0.9 35 12-47 47-81 (89)
235 1z60_A TFIIH basal transcripti 28.2 43 0.0015 26.6 3.1 40 144-184 16-58 (59)
236 1mm2_A MI2-beta; PHD, zinc fin 27.7 33 0.0011 27.0 2.5 45 142-188 8-57 (61)
237 2ct7_A Ring finger protein 31; 27.6 14 0.00048 31.2 0.3 29 145-173 27-61 (86)
238 1f62_A Transcription factor WS 27.4 35 0.0012 25.6 2.5 42 145-186 2-49 (51)
239 1vfy_A Phosphatidylinositol-3- 27.1 30 0.001 28.3 2.2 30 143-172 11-44 (73)
240 1m3v_A FLIN4, fusion of the LI 27.0 32 0.0011 30.7 2.5 47 514-579 31-80 (122)
241 2k16_A Transcription initiatio 26.5 24 0.00081 28.9 1.4 48 143-190 18-71 (75)
242 2yt5_A Metal-response element- 26.3 24 0.00081 28.0 1.4 48 142-189 5-63 (66)
243 2l5u_A Chromodomain-helicase-D 25.6 39 0.0013 26.6 2.5 43 142-186 10-57 (61)
244 2lk0_A RNA-binding protein 5; 25.4 20 0.00068 24.7 0.7 11 52-62 3-13 (32)
245 2k1p_A Zinc finger RAN-binding 25.3 25 0.00086 24.4 1.2 12 52-63 4-15 (33)
246 1x4u_A Zinc finger, FYVE domai 23.8 36 0.0012 28.6 2.1 30 143-172 14-47 (84)
247 1fre_A Nuclear factor XNF7; zi 23.6 39 0.0013 24.0 2.0 27 216-242 5-31 (42)
248 1z2q_A LM5-1; membrane protein 23.5 35 0.0012 28.6 2.0 32 142-173 20-55 (84)
249 2jmo_A Parkin; IBR, E3 ligase, 23.3 15 0.00051 30.7 -0.4 33 143-175 25-70 (80)
250 2yw8_A RUN and FYVE domain-con 23.2 36 0.0012 28.5 2.0 48 142-189 18-74 (82)
251 2co8_A NEDD9 interacting prote 22.3 1.2E+02 0.004 24.8 5.1 51 11-63 14-74 (82)
252 1wfk_A Zinc finger, FYVE domai 22.1 35 0.0012 29.1 1.7 31 143-173 9-43 (88)
253 1joc_A EEA1, early endosomal a 21.9 30 0.001 31.5 1.3 30 515-544 69-102 (125)
254 3t7l_A Zinc finger FYVE domain 21.4 42 0.0014 28.6 2.1 33 142-174 19-55 (90)
255 1wev_A Riken cDNA 1110020M19; 21.1 26 0.00088 29.8 0.7 48 142-189 15-74 (88)
256 1m3v_A FLIN4, fusion of the LI 21.1 43 0.0015 29.8 2.2 48 142-190 31-81 (122)
No 1
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12
Probab=100.00 E-value=3.2e-65 Score=511.40 Aligned_cols=185 Identities=49% Similarity=0.904 Sum_probs=151.0
Q ss_pred hhhhhcCCcccccCceee--cCCCCCCCCCCCCCCCCCCCcccccCccchhhhhhhccCcCCCCCCcccCCCCcceEEec
Q 004418 240 ERAQKTGKANAASGKIFV--TIPPDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNYGSQSVAL 317 (754)
Q Consensus 240 eRA~k~gkana~sgri~~--~~~~~~~Gpip~~~~p~~~~Gv~vG~~~~~r~~~~~~G~H~~~~~GI~~~~~~Ga~Siv~ 317 (754)
+..++||++|||+|++|+ ++|.++||||| ||+|||||+||+||+++|+|+++|+||+|++..||||||+
T Consensus 4 ~~~~~~g~~~a~~g~~~~~~~~p~~~~G~IP---------GV~VGd~f~~R~el~~~GlH~p~~aGI~g~~~~GA~SIVl 74 (231)
T 3oln_A 4 ESRRDWGRGMACVGRTRECTIVPSNHYGPIP---------GIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDGAYSLVL 74 (231)
T ss_dssp --------------------CCCTTCCSCCT---------TCCTTCEESSHHHHHHTTSSCCSSCSEEEETTTEEEEEEE
T ss_pred cccccccccccccceeEEEeecCCccCcCCC---------CCcCcCEEccHHHHhhhCCCCcccCCcccCCCCCeEEEEe
Confidence 456689999999999997 56999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCcEEEEEecCCCCCCCCccCCccccccchhhhhHHHHHHHh---------------hcCCcEEEEecccC
Q 004418 318 SGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFEKMNEALRVSC---------------KKGYPVRVVRSHKE 382 (754)
Q Consensus 318 sggy~dd~d~gd~~~YtG~gg~~~~~~~~~~~~~~~dQ~~~~~n~AL~~s~---------------~~g~pVRViR~~~~ 382 (754)
||||+||+|+||+|+|||+||+|++||+|++. |++||+|++||+||++|| +.|+|||||||++.
T Consensus 75 SGgYeDD~D~Gd~liYTGsGG~d~~gnkrt~~-q~~DQkl~~gNlAL~~Sc~~~~~~k~~~~~~~~~~g~PVRVIRg~k~ 153 (231)
T 3oln_A 75 AGGFADEVDRGDEFTYTGSGGKNLAGNKRIGA-PSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKG 153 (231)
T ss_dssp SSCSSTTCBCSSEEEEECCCC------------CCSCCCSCHHHHHHHHHSSSCCCTTTCEECSSGGGSCCEEEEEEGGG
T ss_pred cCCccccCCCCCEEEEEcCCCccCcCcccccc-cccccccccchHHHHhhhhccccccccchhhhhccCCceEEEecccc
Confidence 99999999999999999999999999999874 999999999999999996 46899999999996
Q ss_pred -CCCCCCCCCceEEceeeEEEEEEEeeCCc-CceEEEEEEEEeCCCCCCCCccc
Q 004418 383 -KRSSYAPEKGVRYDGVYRIEKCWRKIGIQ-GFKVCRYLFVRCDNEPAPWTSDE 434 (754)
Q Consensus 383 -~~s~~ap~~gyrYDGLY~V~~~w~~~g~~-g~~v~~f~l~R~~~qp~~~~~~~ 434 (754)
++|.|||.+||||||||+|++||.++|++ ||.||||+|+|+++||+||++++
T Consensus 154 ~k~s~yaP~~gyrYDGLY~V~~~W~e~g~s~G~~V~Kf~L~R~~gQP~~w~~~~ 207 (231)
T 3oln_A 154 RKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEG 207 (231)
T ss_dssp TTTCTTSCSSSEEEEEEEEEEEEEEEECTTTCCEEEEEEEEECCSSCCTTSHHH
T ss_pred CcCCCccCCCCeEeCeEEEEEEEEeccCCcCCeEEEEEEEEECCCCCCCcchhh
Confidence 47999999999999999999999999999 99999999999999999999876
No 2
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A*
Probab=100.00 E-value=1e-62 Score=490.03 Aligned_cols=191 Identities=53% Similarity=0.926 Sum_probs=174.5
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCccchhhhhhhccCcCCCCCCcccCCCCcceEEeccCCCccCCCCCcEEEEEecCC
Q 004418 259 IPPDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNYGSQSVALSGGYEDDEDHGEWFLYTGSGG 338 (754)
Q Consensus 259 ~~~~~~Gpip~~~~p~~~~Gv~vG~~~~~r~~~~~~G~H~~~~~GI~~~~~~Ga~Siv~sggy~dd~d~gd~~~YtG~gg 338 (754)
+|.+|||+|| ||+||+||++|++|+++|+|+++|+||+|+++.||+|||+||||+||.|+||+|+|||+||
T Consensus 2 ~p~~~~G~iP---------Gv~VGd~f~~R~el~~~G~H~~~qaGI~g~~~~GA~SIVlSGGY~DD~D~Gd~l~YTGsGG 72 (212)
T 3fde_A 2 MPANHFGPIP---------GVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTYTGSGG 72 (212)
T ss_dssp CCTTCCSCCT---------TCCTTCEESSHHHHHHHTSSCCSSCSEEEETTTEEEEEEECSCSTTCEECSSEEEEECSCC
T ss_pred CCcccccCCC---------CCcCccEecCHHHHhHhccCCCCcCCcccCCCcceEEEEeCCCcccCCCCCCEEEEeccCC
Confidence 6899999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCccccccchhhhhHHHHHHHh--------------hcCCcEEEEecccC-CCCCCCCCCceEEceeeEEEE
Q 004418 339 RDLSGNKRTNKEQSFDQKFEKMNEALRVSC--------------KKGYPVRVVRSHKE-KRSSYAPEKGVRYDGVYRIEK 403 (754)
Q Consensus 339 ~~~~~~~~~~~~~~~dQ~~~~~n~AL~~s~--------------~~g~pVRViR~~~~-~~s~~ap~~gyrYDGLY~V~~ 403 (754)
+|++||+|++. |++||+|++||+||++|| ++++|||||||++. ++|.|||.+||||||||+|++
T Consensus 73 ~d~~gnkr~~~-q~~DQ~l~~gNlAL~~s~~~~~~~~~~~~~s~~~g~PVRVIRg~k~~k~s~yaP~~gyrYDGLY~V~~ 151 (212)
T 3fde_A 73 RDLSGNKRTAG-QSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVK 151 (212)
T ss_dssp BCCTTTCSCCC-BCSCCCSCHHHHHHHHTSSSCCCTTCEECSSGGGSCCEEEEEESCSSTTCSSSCSSSEEEEEEEEEEE
T ss_pred ccCcCccccCc-ccccccccccchHHHhhccccccccchhhhhhhcCCcEEEEcccCcCCCCccCCCCCeEeCeEEEEEE
Confidence 99999999885 999999999999999997 47999999999987 479999999999999999999
Q ss_pred EEEeeCCcCceEEEEEEEEeCCCCCCCCccccCCCCCCCC---CCchhhhhccccccccC
Q 004418 404 CWRKIGIQGFKVCRYLFVRCDNEPAPWTSDEFGDRPRSLP---GIPELKMATDVTERKES 460 (754)
Q Consensus 404 ~w~~~g~~g~~v~~f~l~R~~~qp~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~ 460 (754)
||.++|++||.||||+|+|+++||+||++++. .|.+.|. .+|+.....++++++|+
T Consensus 152 ~W~e~g~~G~~V~kf~L~R~~gqp~~w~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~ 210 (212)
T 3fde_A 152 YWPERGKSGFLVWRYLLRRDDTEPEPWTREGK-DRTRQLGLTMQYPEGYLEALANKEKSR 210 (212)
T ss_dssp EEEEECTTSSEEEEEEEEECCSSCCTTSHHHH-HHHHHHTCCCBCCTTHHHHHHHHTSCC
T ss_pred EEEccCCCCcEEEEEEEEECCCCCCCcchhhH-hhhhccccceeCCcchhhHhhhcchhc
Confidence 99999999999999999999999999998762 2344433 36776666777777664
No 3
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12
Probab=100.00 E-value=9.9e-62 Score=489.24 Aligned_cols=196 Identities=52% Similarity=0.916 Sum_probs=163.3
Q ss_pred ceeecCCCCCCCCCCCCCCCCCCCcccccCccchhhhhhhccCcCCCCCCcccCCCCcceEEeccCCCccCCCCCcEEEE
Q 004418 254 KIFVTIPPDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNYGSQSVALSGGYEDDEDHGEWFLY 333 (754)
Q Consensus 254 ri~~~~~~~~~Gpip~~~~p~~~~Gv~vG~~~~~r~~~~~~G~H~~~~~GI~~~~~~Ga~Siv~sggy~dd~d~gd~~~Y 333 (754)
++.+++|.+|||+|| ||+|||||+||+||+++|+|+++|+||+|+...||||||+||||+||.|+||+|+|
T Consensus 4 ~~~~~~~~~~~G~iP---------GV~VGd~f~~R~el~~~GlH~~~~aGI~g~~~~GA~SIVlSGgYeDD~D~GD~liY 74 (239)
T 2pb7_A 4 KECTIVPSNHYGPIP---------GIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDHGNFFTY 74 (239)
T ss_dssp -CCCSSCTTCCSCCT---------TCCTTCEESSHHHHHHHTSSCCSSCSEEEETTTEEEEEEESSCSTTCCBCSSEEEE
T ss_pred eEEEecCCCcccCCC---------CCcCCCEECCHHHHHHhCCccccccCcccCCCCCEEEEEECCCccccccCCcEEEE
Confidence 455788999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCccCCccccccchhhhhHHHHHHHh---------------hcCCcEEEEecccC-CCCCCCCCCceEEce
Q 004418 334 TGSGGRDLSGNKRTNKEQSFDQKFEKMNEALRVSC---------------KKGYPVRVVRSHKE-KRSSYAPEKGVRYDG 397 (754)
Q Consensus 334 tG~gg~~~~~~~~~~~~~~~dQ~~~~~n~AL~~s~---------------~~g~pVRViR~~~~-~~s~~ap~~gyrYDG 397 (754)
||+||+|++||+|++ .|+.||+|++||+||++|| ++|+|||||||++. ++|.|||..||||||
T Consensus 75 TGsGG~d~~gnkr~~-~q~~DQ~L~~gNlAL~~sc~~~~~~k~~~~~~s~~~g~PVRVIRg~k~~k~s~yaP~~GyrYDG 153 (239)
T 2pb7_A 75 TGSGGRDLSGNKRTA-EQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDG 153 (239)
T ss_dssp ECCCC-----------CCCSCCCSCHHHHHHHHTSSSCCCTTTCEECTTGGGSCCEEEEEEGGGGGTCTTSCSSSEEEEE
T ss_pred EccCCccCccccccc-ccccccccccccHHHHhhhhcccccccchhhhhhccCCceEEEcccccCcCCcccCCceEEeCC
Confidence 999999999999987 4999999999999999985 58999999999987 579999999999999
Q ss_pred eeEEEEEEEeeCCcCceEEEEEEEEeCCCCCCCCccccCCCCCCCC---CCchhhhhccccccccC
Q 004418 398 VYRIEKCWRKIGIQGFKVCRYLFVRCDNEPAPWTSDEFGDRPRSLP---GIPELKMATDVTERKES 460 (754)
Q Consensus 398 LY~V~~~w~~~g~~g~~v~~f~l~R~~~qp~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~ 460 (754)
||+|++||.++|++||.||||+|+|+++||+||++++. .|.+.|. .+|+.....|++..+|.
T Consensus 154 LY~V~~~w~e~gk~G~~V~kf~L~R~~gQP~~w~~~~~-~r~~~l~~~~~~p~~~~~~~~~~~~~~ 218 (239)
T 2pb7_A 154 IYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGPWTKEGK-DRIKKLGLTMQYPEGYLEALANREREK 218 (239)
T ss_dssp EEEEEEEEEEECTTSSEEEEEEEEECCSSCCTTSHHHH-HHHHHTTCCCBCCTTTTTCC-------
T ss_pred eEEEEEEEEeecCCCcEEEEEEEEECCCCCCCcccccc-ccccccCcceecCcccchhhhhhhhhh
Confidence 99999999999999999999999999999999998752 3333333 34776667788777765
No 4
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Probab=100.00 E-value=5.3e-56 Score=432.18 Aligned_cols=156 Identities=34% Similarity=0.504 Sum_probs=137.9
Q ss_pred CCCCCCCCCCCCCCCcccccCccchhhhhhhccCcCCCCCCcccCCCC----cceEEeccCCCccCCCCCcEEEEEecCC
Q 004418 263 HFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNY----GSQSVALSGGYEDDEDHGEWFLYTGSGG 338 (754)
Q Consensus 263 ~~Gpip~~~~p~~~~Gv~vG~~~~~r~~~~~~G~H~~~~~GI~~~~~~----Ga~Siv~sggy~dd~d~gd~~~YtG~gg 338 (754)
+||+|| ||+|||||++|+||+++|+|+++|+||++++.. ||+|||+||||+||.|+||+|+|||+||
T Consensus 2 ~~G~vp---------Gv~vGd~f~~R~el~~~G~H~~~~aGI~~~~~~~~~~gA~SIV~SggY~Dd~D~gd~l~YTG~GG 72 (167)
T 3q0b_X 2 IIGTVP---------GVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGG 72 (167)
T ss_dssp CCSCCT---------TCCTTCEESCHHHHHHTTSCCCSSCSEEEEECSSSCEEEEEEEESSSTTCEECSSSEEEEECSCT
T ss_pred cccCCC---------CCcCccEecchHHHhHhCcCCCccCCeecccccCCCcceEEEEeCCCcccccCCCCEEEEECCCC
Confidence 689999 999999999999999999999999999998765 7999999999999999999999999999
Q ss_pred CCCC-CCccCCccccccchhhhhHHHHHHHhhcCCcEEEEecccC-CCCCCCCCCceEEceeeEEEEEEEeeCCcCceEE
Q 004418 339 RDLS-GNKRTNKEQSFDQKFEKMNEALRVSCKKGYPVRVVRSHKE-KRSSYAPEKGVRYDGVYRIEKCWRKIGIQGFKVC 416 (754)
Q Consensus 339 ~~~~-~~~~~~~~~~~dQ~~~~~n~AL~~s~~~g~pVRViR~~~~-~~s~~ap~~gyrYDGLY~V~~~w~~~g~~g~~v~ 416 (754)
++++ +++ +|+.||+|++||+||++||++++|||||||++. +++.|+|.+||||||||+|++||.++|++||.||
T Consensus 73 ~~~~~~~~----~q~~DQ~l~~gN~AL~~S~~~~~pVRViRg~k~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~ 148 (167)
T 3q0b_X 73 NVGKKKNN----EPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVF 148 (167)
T ss_dssp TCC---------CCCCCCCSSHHHHHHHHHHHHCCCEEEEEECC----------CCEEEEEEEEEEEEEEEECTTSCEEE
T ss_pred Cccccccc----cccccCccchhHHHHHHHHHcCCcEEEEEeecccccCCCCCCccEEECeEEEEeeeEEeeCCCCcEEE
Confidence 9986 444 499999999999999999999999999999987 3478999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCC
Q 004418 417 RYLFVRCDNEPAPWT 431 (754)
Q Consensus 417 ~f~l~R~~~qp~~~~ 431 (754)
||+|+|++|||++-+
T Consensus 149 kf~L~R~~gQp~l~~ 163 (167)
T 3q0b_X 149 KFKLRRIPGQPELPW 163 (167)
T ss_dssp EEEEEECTTSCCCCC
T ss_pred EEEEEEcCCCCCCCh
Confidence 999999999998644
No 5
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=120.77 Aligned_cols=76 Identities=24% Similarity=0.603 Sum_probs=64.4
Q ss_pred hhhhccccccccccccCceecC-CCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccH
Q 004418 511 KLLKEFSCLICRQVMNLPITTP-CAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNR 589 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~Pv~lp-CgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~ 589 (754)
.++++|.|+||+++|.+|++++ |||+||..||..|+.... ...||.||..+.. ...+.+|.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-----------------~~~CP~Cr~~~~~-~~~~~~n~ 70 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-----------------EHTCPTCHQNDVS-PDALIANK 70 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT-----------------TCCCTTTCCSSCC-TTSCEECH
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC-----------------CCcCcCCCCcCCC-ccccCcCH
Confidence 4667999999999999999999 999999999999986432 3589999999742 35789999
Q ss_pred HHHHHHHHHHcccCC
Q 004418 590 ELMDVIESLKHKTEE 604 (754)
Q Consensus 590 ~L~~lve~l~~~~~~ 604 (754)
.|.++++.++.....
T Consensus 71 ~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 71 FLRQAVNNFKNETGY 85 (92)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhH
Confidence 999999999876543
No 6
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=1.4e-13 Score=126.94 Aligned_cols=93 Identities=24% Similarity=0.411 Sum_probs=67.1
Q ss_pred hhHHHhcccCCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhh
Q 004418 134 SDVLDLLDGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLS 212 (754)
Q Consensus 134 ~~~~~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~ 212 (754)
...+..+.+.+.|+||+++|.+|+++ +|||+||..||..|+. ..||+||..+.. ..+..|..|.++++.++..
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~---~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 13 RAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI---QDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC---SSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc---ccccccHHHHHHHHHHHHH
Confidence 45667788999999999999999999 9999999999999987 689999999865 5789999999999988876
Q ss_pred ccc-------CCCCcccccccccCCCC
Q 004418 213 KSN-------LAAVPTKVYHFMRNQDR 232 (754)
Q Consensus 213 ~~~-------~~~~~~k~~~~~~~~dr 232 (754)
... .+..|.+...+||+++.
T Consensus 87 ~~~~~~~~~~~c~~h~~~~~lfc~~~~ 113 (117)
T 1jm7_B 87 RNLLHDNELSDLKEDKPRKSLFNDAGN 113 (117)
T ss_dssp HHHHHCCCCCC----------------
T ss_pred HHHHhhccccccccccccCccceeccc
Confidence 532 22345566777777765
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.40 E-value=1.8e-13 Score=116.66 Aligned_cols=71 Identities=23% Similarity=0.429 Sum_probs=64.3
Q ss_pred cccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhc
Q 004418 140 LDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSK 213 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~ 213 (754)
+.+.+.|+||+++|.+|++++|||+||..||.+|+..+...||+||..+.. ..+..|..|.++|+.++...
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~---~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH---AGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS---CCCEECTTTHHHHHHHHHHS
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh---hhCccCHHHHHHHHHHHHHc
Confidence 567899999999999999999999999999999998767899999999975 47889999999999988654
No 8
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.39 E-value=4.2e-13 Score=129.26 Aligned_cols=97 Identities=26% Similarity=0.555 Sum_probs=76.1
Q ss_pred CCCCchhhHHHHHHHHHHh-----------hHHHHHhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCccccc
Q 004418 486 GTGKPEDGKKVRRAIRQAQ-----------NTSVREKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRE 554 (754)
Q Consensus 486 ~~~~~e~~~~ir~~~~~~~-----------~~~~~~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~ 554 (754)
..++.++...|+....+.. ...++..+++.+.|+||+++|.+|++++|||+||..||..|+...
T Consensus 38 ~~L~~e~~~li~~d~~n~~l~~e~~~~l~~~~~~~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~----- 112 (150)
T 1z6u_A 38 FQLTPQQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ----- 112 (150)
T ss_dssp CCCCHHHHHHHHHCGGGHHHHHHHGGGGGGGGGHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-----
T ss_pred eeccHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC-----
Confidence 4677777777765322210 013566778899999999999999999999999999999998743
Q ss_pred ccCCCccccCCCCcccCCCCCCCcccccCCCcccHHHHHHHHHHHcc
Q 004418 555 RSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNRELMDVIESLKHK 601 (754)
Q Consensus 555 ~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~L~~lve~l~~~ 601 (754)
.+.||.||..+.. ...+.+|..|.++++.+...
T Consensus 113 -------------~~~CP~Cr~~~~~-~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 113 -------------VFSCPACRHDLGQ-NYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp -------------CCBCTTTCCBCCT-TCCCCBCHHHHHHHHHHSTT
T ss_pred -------------CCcCCCCCccCCC-CCCCCCCHHHHHHHHHHhhH
Confidence 3579999999983 12789999999999998754
No 9
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.39 E-value=1.7e-13 Score=116.84 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=62.5
Q ss_pred hhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHH
Q 004418 511 KLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNRE 590 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~ 590 (754)
.+.++|.|+||+++|.+|++++|||+||..||..|+... ...||.||..+. ...+.+|..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~------------------~~~CP~C~~~~~--~~~l~~n~~ 63 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG------------------HKTCPKSQETLL--HAGLTPNYV 63 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT------------------CCBCTTTCCBCS--SCCCEECTT
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC------------------cCCCCCCcCCCC--hhhCccCHH
Confidence 356789999999999999999999999999999999742 347999999988 357889999
Q ss_pred HHHHHHHHHccc
Q 004418 591 LMDVIESLKHKT 602 (754)
Q Consensus 591 L~~lve~l~~~~ 602 (754)
|.++++.+....
T Consensus 64 l~~~i~~~~~~~ 75 (78)
T 1t1h_A 64 LKSLIALWCESN 75 (78)
T ss_dssp THHHHHHHHHHS
T ss_pred HHHHHHHHHHHc
Confidence 999999987654
No 10
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.38 E-value=5e-13 Score=124.26 Aligned_cols=76 Identities=36% Similarity=0.728 Sum_probs=65.4
Q ss_pred HHHHhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCc
Q 004418 507 SVREKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQ 586 (754)
Q Consensus 507 ~~~~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~ 586 (754)
.+...+++++.|+||+++|.+|++++|||+||..||..|+... ...||.||..+.. ...+.
T Consensus 44 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~~-~~~~~ 104 (124)
T 3fl2_A 44 LFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ------------------VFSCPACRYDLGR-SYAMQ 104 (124)
T ss_dssp HHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT------------------CCBCTTTCCBCCT-TCCCC
T ss_pred HHHHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC------------------cCCCCCCCccCCC-CCCCC
Confidence 4566778899999999999999999999999999999998733 3489999999873 24789
Q ss_pred ccHHHHHHHHHHHcc
Q 004418 587 VNRELMDVIESLKHK 601 (754)
Q Consensus 587 ~N~~L~~lve~l~~~ 601 (754)
+|..|.++++.+...
T Consensus 105 ~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 105 VNQPLQTVLNQLFPG 119 (124)
T ss_dssp CCHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHccc
Confidence 999999999998754
No 11
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.37 E-value=5.3e-13 Score=124.11 Aligned_cols=75 Identities=25% Similarity=0.493 Sum_probs=65.8
Q ss_pred hHHHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHh
Q 004418 135 DVLDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKL 211 (754)
Q Consensus 135 ~~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~ 211 (754)
.....+.+.+.|+||+++|.+|++++|||+||..||..|+......||+||..+... ..+..|..|.++++.+..
T Consensus 44 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~--~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 44 LFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRS--YAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT--CCCCCCHHHHHHHHHHST
T ss_pred HHHHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCC--CCCCCCHHHHHHHHHHcc
Confidence 456677889999999999999999999999999999999986567999999999752 468999999999987754
No 12
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.35 E-value=4.3e-13 Score=116.83 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=62.5
Q ss_pred hhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHH
Q 004418 511 KLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNRE 590 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~ 590 (754)
.+.++|.||||+++|.+||+++|||+||+.||..|+... ..||.|+..+. ...+.+|..
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~-------------------~~cP~~~~~l~--~~~l~pn~~ 68 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS-------------------PTDPFNRQMLT--ESMLEPVPE 68 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC-------------------SBCTTTCCBCC--GGGCEECHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC-------------------CCCCCCcCCCC--hHhcchHHH
Confidence 456799999999999999999999999999999999732 37999999998 368999999
Q ss_pred HHHHHHHHHccc
Q 004418 591 LMDVIESLKHKT 602 (754)
Q Consensus 591 L~~lve~l~~~~ 602 (754)
|.++|+.+....
T Consensus 69 L~~~i~~~~~~~ 80 (85)
T 2kr4_A 69 LKEQIQAWMREK 80 (85)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987543
No 13
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.34 E-value=6.9e-13 Score=119.10 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=62.9
Q ss_pred hhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHHH
Q 004418 512 LLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNREL 591 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~L 591 (754)
+.++|.||||+++|.+||+++|||+||+.||..|+... ..||.|+..+. ...+.+|..|
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~-------------------~~cP~~~~~l~--~~~L~pn~~L 84 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS-------------------PTDPFNRQTLT--ESMLEPVPEL 84 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSC-------------------SBCSSSCCBCC--TTSSEECHHH
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcC-------------------CCCCCCCCCCC--hhhceECHHH
Confidence 44689999999999999999999999999999998733 37999999998 4689999999
Q ss_pred HHHHHHHHcccC
Q 004418 592 MDVIESLKHKTE 603 (754)
Q Consensus 592 ~~lve~l~~~~~ 603 (754)
.++|+.+.....
T Consensus 85 k~~I~~~~~~~~ 96 (100)
T 2kre_A 85 KEQIQAWMREKQ 96 (100)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhh
Confidence 999999986643
No 14
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.34 E-value=5.4e-13 Score=119.61 Aligned_cols=78 Identities=22% Similarity=0.410 Sum_probs=65.4
Q ss_pred HHHHhhhhccccccccccccCcee-cCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCC
Q 004418 507 SVREKLLKEFSCLICRQVMNLPIT-TPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNP 585 (754)
Q Consensus 507 ~~~~~L~e~l~CpIC~~~~~~Pv~-lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~ 585 (754)
.....|++++.|+||+++|.+|++ ++|||+||..||..|+... ...||.||..+. ...+
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~------------------~~~CP~Cr~~~~--~~~l 73 (100)
T 3lrq_A 14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ------------------RAQCPHCRAPLQ--LREL 73 (100)
T ss_dssp HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT------------------CSBCTTTCCBCC--GGGC
T ss_pred cccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC------------------cCCCCCCCCcCC--HHHh
Confidence 455678899999999999999999 9999999999999998754 147999999997 4678
Q ss_pred cccHHHHHHHHHHHcccCC
Q 004418 586 QVNRELMDVIESLKHKTEE 604 (754)
Q Consensus 586 ~~N~~L~~lve~l~~~~~~ 604 (754)
..|+.+.++++.+......
T Consensus 74 ~~~~~~~~i~~~~~~l~~~ 92 (100)
T 3lrq_A 74 VNCRWAEEVTQQLDTLQLC 92 (100)
T ss_dssp EECTTHHHHHHHHHHHCC-
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 8888888888888766543
No 15
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.33 E-value=1.1e-12 Score=117.36 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=63.7
Q ss_pred hhhhccccccccccccCceecCCC-ChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccH
Q 004418 511 KLLKEFSCLICRQVMNLPITTPCA-HNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNR 589 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~Pv~lpCg-HsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~ 589 (754)
.+.++|.||||+++|.+||+++|| |+||+.||..|+... ..||.||..+. ...+.+|.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~-------------------~~cP~~~~~l~--~~~L~pn~ 76 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-------------------QTDPFNRSPLT--MDQIRPNT 76 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-------------------CBCTTTCSBCC--TTTSEECH
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhC-------------------CCCCCCCCCCC--hhhceEcH
Confidence 355799999999999999999999 999999999998743 27999999998 46899999
Q ss_pred HHHHHHHHHHcccC
Q 004418 590 ELMDVIESLKHKTE 603 (754)
Q Consensus 590 ~L~~lve~l~~~~~ 603 (754)
.|.++|+.+.....
T Consensus 77 ~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 77 ELKEKIQRWLAERK 90 (98)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999987654
No 16
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.33 E-value=5.2e-13 Score=117.41 Aligned_cols=75 Identities=23% Similarity=0.464 Sum_probs=64.9
Q ss_pred HhcccCCcccccCCCCCCCeecC-CCCcchhhhHHhhhcc-CCccccccccccCcCccCCCCcchHHHHHHHHHHhhcc
Q 004418 138 DLLDGSLNCSFCMQLPERPVTTP-CGHNFCLKCFQKWIGQ-GKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKS 214 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Ci~~~~~~-~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~ 214 (754)
..+.+.+.|+||+++|.+|++++ |||+||..||..|+.. +...||+||..+... ..+..|..|.++++.++....
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~--~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP--DALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCT--TSCEECHHHHHHHHHHHHHHT
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCc--cccCcCHHHHHHHHHHHHHHh
Confidence 35678899999999999999999 9999999999999864 347999999997431 578999999999999988764
No 17
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.33 E-value=7.3e-13 Score=118.22 Aligned_cols=76 Identities=26% Similarity=0.600 Sum_probs=65.2
Q ss_pred HHhhhhccccccccccccCceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcc
Q 004418 509 REKLLKEFSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQV 587 (754)
Q Consensus 509 ~~~L~e~l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~ 587 (754)
++.+++.+.|+||++.|.+|+++ +|||+||..||..|+... ..||.||..+.. ..+..
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-------------------~~CP~Cr~~~~~--~~l~~ 74 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-------------------TQCPTCCVTVTE--PDLKN 74 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-------------------CBCTTTCCBCCG--GGCEE
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-------------------CCCCCCCCcCCh--hhCCc
Confidence 44566789999999999999988 899999999999998743 379999999883 67899
Q ss_pred cHHHHHHHHHHHcccCCC
Q 004418 588 NRELMDVIESLKHKTEEN 605 (754)
Q Consensus 588 N~~L~~lve~l~~~~~~~ 605 (754)
|..|.++++.++......
T Consensus 75 n~~l~~~i~~~~~~~~~~ 92 (99)
T 2y43_A 75 NRILDELVKSLNFARNHL 92 (99)
T ss_dssp CHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998776543
No 18
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=116.50 Aligned_cols=77 Identities=21% Similarity=0.448 Sum_probs=63.3
Q ss_pred hhhccccccccccccCceecC-CCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCC--CCCC-cccccCCCcc
Q 004418 512 LLKEFSCLICRQVMNLPITTP-CAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPS--CPTD-ISEFLQNPQV 587 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~lp-CgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~--CR~~-v~~~~~~~~~ 587 (754)
+.++|.||||+++|.+||+++ |||+||+.||..|+.... .....+.||. |+.. +. ...+.+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~-------------~~~~~~~CP~tgc~~~~l~--~~~L~p 68 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQ-------------KRKKKAYCPQIGCSHTDIR--KSDLIQ 68 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHH-------------TTTCCBCCCSTTCCCCCBC--GGGEEE
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHcc-------------CcCCCCCCCcCcCcccccC--HhhCcC
Confidence 456899999999999999996 999999999999997431 0112468999 9876 66 367999
Q ss_pred cHHHHHHHHHHHcccC
Q 004418 588 NRELMDVIESLKHKTE 603 (754)
Q Consensus 588 N~~L~~lve~l~~~~~ 603 (754)
|..|.++|+.++....
T Consensus 69 n~~L~~~I~~~~~~~~ 84 (94)
T 2yu4_A 69 DEALRRAIENHNKKRH 84 (94)
T ss_dssp CHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999987654
No 19
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.33 E-value=5e-13 Score=119.81 Aligned_cols=77 Identities=13% Similarity=0.383 Sum_probs=67.8
Q ss_pred hHHHhcccCCcccccCCCCCCCee-cCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhc
Q 004418 135 DVLDLLDGSLNCSFCMQLPERPVT-TPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSK 213 (754)
Q Consensus 135 ~~~~~l~~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~ 213 (754)
.....+.+.+.|+||++.|.+|++ ++|||+||..||.+|+......||+||..+.. ..+..+..+..+++.+...+
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~---~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL---RELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG---GGCEECTTHHHHHHHHHHHC
T ss_pred cccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH---HHhHhhHHHHHHHHHHHHHH
Confidence 445677889999999999999999 99999999999999999745799999999976 56888888999998888876
Q ss_pred c
Q 004418 214 S 214 (754)
Q Consensus 214 ~ 214 (754)
.
T Consensus 91 ~ 91 (100)
T 3lrq_A 91 L 91 (100)
T ss_dssp C
T ss_pred H
Confidence 5
No 20
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.31 E-value=1.2e-12 Score=117.14 Aligned_cols=73 Identities=15% Similarity=0.027 Sum_probs=66.5
Q ss_pred HhcccCCcccccCCCCCCCeecCCC-CcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhcc
Q 004418 138 DLLDGSLNCSFCMQLPERPVTTPCG-HNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKS 214 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~~Pv~l~Cg-H~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~ 214 (754)
..+.+++.||||+++|.+||+++|| |+||..||.+|+.. ..+||+||.++.. ..+..|..|.++|+.++....
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~---~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM---DQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT---TTSEECHHHHHHHHHHHHHST
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh---hhceEcHHHHHHHHHHHHHcc
Confidence 4567899999999999999999999 99999999999987 6799999999986 578999999999999987764
No 21
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.30 E-value=9.6e-13 Score=114.61 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=65.6
Q ss_pred HhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhcc
Q 004418 138 DLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKS 214 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~ 214 (754)
..+.+++.|+||+++|.+||+++|||+||..||..|+.. ..+||+|+..+.. ..+..|..|.++|+.++....
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~---~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE---SMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG---GGCEECHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh---HhcchHHHHHHHHHHHHHHhh
Confidence 456789999999999999999999999999999999986 6799999999976 579999999999999986643
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.30 E-value=1.4e-12 Score=123.61 Aligned_cols=69 Identities=29% Similarity=0.646 Sum_probs=54.1
Q ss_pred HHHHhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCc
Q 004418 507 SVREKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQ 586 (754)
Q Consensus 507 ~~~~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~ 586 (754)
.+.+.+++++.|+||++.|.+|++++|||+||..||..|+.... .||.||..+... .
T Consensus 45 ~~~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------------~CP~Cr~~~~~~----~ 101 (138)
T 4ayc_A 45 HMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-------------------ECPICRKDIKSK----T 101 (138)
T ss_dssp HHHHHHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCS-------------------BCTTTCCBCCCE----E
T ss_pred HHHHhccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCC-------------------cCCCCCCcCCCC----C
Confidence 34556778999999999999999999999999999999986443 799999998732 3
Q ss_pred ccHHHHHHHHHH
Q 004418 587 VNRELMDVIESL 598 (754)
Q Consensus 587 ~N~~L~~lve~l 598 (754)
.+..+..+++.+
T Consensus 102 ~~~~~~~~i~~~ 113 (138)
T 4ayc_A 102 YSLVLDNCINKM 113 (138)
T ss_dssp ECHHHHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 344444555444
No 23
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=115.81 Aligned_cols=75 Identities=21% Similarity=0.583 Sum_probs=66.9
Q ss_pred HHHhcccCCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhcc
Q 004418 136 VLDLLDGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKS 214 (754)
Q Consensus 136 ~~~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~ 214 (754)
.+..+.+.+.|+||++.|.+|+++ +|||+||..||..|+.. ...||+||..+.. ..+..|..|.++++.++..+.
T Consensus 15 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~---~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE---PDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp GGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG---GGCEECHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh---hhCCcCHHHHHHHHHHHHHHH
Confidence 445667789999999999999998 99999999999999986 6799999999976 468899999999999998765
No 24
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.28 E-value=4.4e-12 Score=122.11 Aligned_cols=75 Identities=31% Similarity=0.501 Sum_probs=66.0
Q ss_pred hHHHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHh
Q 004418 135 DVLDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKL 211 (754)
Q Consensus 135 ~~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~ 211 (754)
..+..+.+.+.|+||++.|.+|++|+|||+||..||..|+......||+||..+... ..+..|..|.++++.+..
T Consensus 70 ~~~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~--~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 70 NFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN--YIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp GHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT--CCCCBCHHHHHHHHHHST
T ss_pred hHHHhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC--CCCCCCHHHHHHHHHHhh
Confidence 355667788999999999999999999999999999999987667999999999863 278999999999998764
No 25
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.27 E-value=2.2e-12 Score=115.80 Aligned_cols=73 Identities=15% Similarity=0.046 Sum_probs=65.9
Q ss_pred HhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhcc
Q 004418 138 DLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKS 214 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~ 214 (754)
..+.+.+.||||+++|.+||+++|||+||..||..|+.. ..+||+|+.++.. ..+..|..|.++|+.++....
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~---~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTE---SMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCT---TSSEECHHHHHHHHHHHHTTT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCCh---hhceECHHHHHHHHHHHHHhh
Confidence 446789999999999999999999999999999999986 7899999999976 579999999999999987654
No 26
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=2.6e-12 Score=118.28 Aligned_cols=75 Identities=25% Similarity=0.598 Sum_probs=65.2
Q ss_pred HHHHHhhhhccccccccccccCceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCC
Q 004418 506 TSVREKLLKEFSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQN 584 (754)
Q Consensus 506 ~~~~~~L~e~l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~ 584 (754)
..+++.|++++.|+||+++|.+|+++ +|||+||..||..|+. ..||.||..+. ...
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---------------------~~CP~Cr~~~~--~~~ 69 (117)
T 1jm7_B 13 RAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---------------------TGCPVCYTPAW--IQD 69 (117)
T ss_dssp HHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---------------------TBCSSSCCBCS--CSS
T ss_pred HHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---------------------CCCcCCCCcCc--ccc
Confidence 34567788999999999999999999 9999999999998864 26999999986 467
Q ss_pred CcccHHHHHHHHHHHcccC
Q 004418 585 PQVNRELMDVIESLKHKTE 603 (754)
Q Consensus 585 ~~~N~~L~~lve~l~~~~~ 603 (754)
+.+|+.|.++++.+.....
T Consensus 70 ~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 70 LKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 8999999999998876654
No 27
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.25 E-value=5e-12 Score=114.65 Aligned_cols=73 Identities=25% Similarity=0.550 Sum_probs=61.8
Q ss_pred HHhhhhccccccccccccCceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccc--cCCC
Q 004418 509 REKLLKEFSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEF--LQNP 585 (754)
Q Consensus 509 ~~~L~e~l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~--~~~~ 585 (754)
++.+++++.|+||+++|.+|+++ +|||+||..||..|+... ..||.||..+... ...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-------------------~~CP~Cr~~~~~~~~~~~l 69 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-------------------KYCPICDVQVHKTRPLLNI 69 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-------------------SBCTTTCCBSCSSCGGGGE
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-------------------CcCcCCCccccccCccccc
Confidence 45677899999999999999998 999999999999998743 3799999998731 1267
Q ss_pred cccHHHHHHHHHHHc
Q 004418 586 QVNRELMDVIESLKH 600 (754)
Q Consensus 586 ~~N~~L~~lve~l~~ 600 (754)
..|..|.++++.+..
T Consensus 70 ~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 70 RSDKTLQDIVYKLVP 84 (108)
T ss_dssp EECHHHHHHHHHHST
T ss_pred CcCHHHHHHHHHHhh
Confidence 889999999988865
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.24 E-value=9.9e-12 Score=117.80 Aligned_cols=67 Identities=31% Similarity=0.663 Sum_probs=53.7
Q ss_pred HHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHH
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMA 209 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~ 209 (754)
...+.+++.|+||++.|.+|++++|||+||..||..|+.. ...||+||..+... ..+..+..++..+
T Consensus 47 ~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~-----~~~~~~~~~i~~~ 113 (138)
T 4ayc_A 47 NDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK-----TYSLVLDNCINKM 113 (138)
T ss_dssp HHHHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE-----EECHHHHHHHHHH
T ss_pred HHhccccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC-----CCccchhHHHHHH
Confidence 3456678899999999999999999999999999999987 67899999998642 2344455554443
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.22 E-value=4.4e-13 Score=114.18 Aligned_cols=65 Identities=22% Similarity=0.542 Sum_probs=53.9
Q ss_pred HHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccC------CccccccccccCcCccCCCCcchHHHH
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQG------KRTCAKCRHIIPPKMASQPRINSALVT 204 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~------~~~CP~CR~~~~~~~~~~~~~n~~L~~ 204 (754)
...+.+.+.|+||++.|.+|++++|||+||..||..|+... ...||+||..+.. ..+..|..|.+
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~---~~l~~n~~l~~ 76 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF---EHLQANQHLAN 76 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS---SGGGTCSSSCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH---hhCCcCHHHHH
Confidence 35567899999999999999999999999999999998863 5789999999875 34556655543
No 30
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=5.4e-12 Score=114.65 Aligned_cols=74 Identities=31% Similarity=0.659 Sum_probs=56.6
Q ss_pred HHHhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcc
Q 004418 508 VREKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQV 587 (754)
Q Consensus 508 ~~~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~ 587 (754)
+...+.+.+.|+||++.+.+|++++|||+||..||..|+.... ....||.||..+.. ..+..
T Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----------------~~~~CP~Cr~~~~~--~~~~~ 75 (112)
T 1jm7_A 14 VINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK----------------GPSQCPLCKNDITK--RSLQE 75 (112)
T ss_dssp HHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS----------------SSCCCTTTSCCCCT--TTCBC
T ss_pred HHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC----------------CCCCCcCCCCcCCH--hhcCc
Confidence 4566778999999999999999999999999999999987542 23589999999882 44555
Q ss_pred cHHHHHHHHHHH
Q 004418 588 NRELMDVIESLK 599 (754)
Q Consensus 588 N~~L~~lve~l~ 599 (754)
|..+.++++.+.
T Consensus 76 ~~~l~~~~~~~~ 87 (112)
T 1jm7_A 76 STRFSQLVEELL 87 (112)
T ss_dssp CCSSSHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 544444444443
No 31
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.19 E-value=1.1e-11 Score=112.41 Aligned_cols=74 Identities=19% Similarity=0.384 Sum_probs=63.1
Q ss_pred HHhcccCCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCccccccccccCcC-ccCCCCcchHHHHHHHHHHh
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPK-MASQPRINSALVTAIRMAKL 211 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~-~~~~~~~n~~L~~lie~~k~ 211 (754)
+..+.+.+.|+||++.|.+|+++ +|||+||..||..|+.. ...||+||..+... .+..+..|..|.++++.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 45677899999999999999998 99999999999999987 58999999998752 22357889999999987754
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.18 E-value=4.2e-13 Score=114.33 Aligned_cols=71 Identities=24% Similarity=0.572 Sum_probs=54.0
Q ss_pred HHhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCccc
Q 004418 509 REKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVN 588 (754)
Q Consensus 509 ~~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N 588 (754)
.+.+++++.|+||++.|.+|++++|||+||..||..|+..... .......||.||..+.. ..+..|
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~------------~~~~~~~CP~Cr~~~~~--~~l~~n 71 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVT------------SMGGKSSCPVCGISYSF--EHLQAN 71 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSS------------SCCCCCCCSSSCCCCCS--SGGGTC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhccc------------CCCCCCcCCCCCCcCCH--hhCCcC
Confidence 3456789999999999999999999999999999988875320 01225689999999872 455566
Q ss_pred HHHHH
Q 004418 589 RELMD 593 (754)
Q Consensus 589 ~~L~~ 593 (754)
..|.+
T Consensus 72 ~~l~~ 76 (79)
T 2egp_A 72 QHLAN 76 (79)
T ss_dssp SSSCC
T ss_pred HHHHH
Confidence 54433
No 33
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.4e-11 Score=105.83 Aligned_cols=66 Identities=29% Similarity=0.605 Sum_probs=53.1
Q ss_pred hhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHHH
Q 004418 512 LLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNREL 591 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~L 591 (754)
+++.+.|+||++.|.+|++++|||+||..||..|+... ..||.||..+. ..+..|..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-------------------~~CP~Cr~~~~---~~~~~~~~- 68 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT-------------------PRCYICDQPTG---GIFNPAKE- 68 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC-------------------SBCSSSCCBCC---SCCEECHH-
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC-------------------CcCCCcCcccc---ccCCcHHH-
Confidence 34689999999999999999999999999999998643 37999999987 45667754
Q ss_pred HHHHHHHHccc
Q 004418 592 MDVIESLKHKT 602 (754)
Q Consensus 592 ~~lve~l~~~~ 602 (754)
+++.++...
T Consensus 69 --l~~~~~~~~ 77 (81)
T 2csy_A 69 --LMAKLQKSG 77 (81)
T ss_dssp --HHHHHSSSC
T ss_pred --HHHHHHhhC
Confidence 455555443
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=2.4e-12 Score=110.75 Aligned_cols=66 Identities=26% Similarity=0.650 Sum_probs=54.5
Q ss_pred HHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccC-----CccccccccccCcCccCCCCcchHHHHH
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQG-----KRTCAKCRHIIPPKMASQPRINSALVTA 205 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~-----~~~CP~CR~~~~~~~~~~~~~n~~L~~l 205 (754)
...+.+.+.|+||++.+.+|++++|||+||..|+..|+... ...||+||..+.. ..+..|..|.++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~~~n~~l~~~ 83 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF---GNLKPNLHVANI 83 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT---TCCEECSCCCSS
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH---HhCCcCHHHHHh
Confidence 35567889999999999999999999999999999998862 6789999999875 356666555443
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=3e-12 Score=110.12 Aligned_cols=70 Identities=23% Similarity=0.666 Sum_probs=54.3
Q ss_pred HhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccH
Q 004418 510 EKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNR 589 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~ 589 (754)
+.+.+.+.|+||++.+.+|++++|||+||..||..|+.... .......||.||..+. ...+.+|+
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-------------~~~~~~~CP~Cr~~~~--~~~~~~n~ 78 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNR-------------NTDGKGNCPVCRVPYP--FGNLKPNL 78 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSB-------------CTTSCBCCTTTCCCCC--TTCCEECS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhcc-------------CCCCCCCCCCCCCcCC--HHhCCcCH
Confidence 34567899999999999999999999999999999987531 0122568999999988 34566665
Q ss_pred HHHHH
Q 004418 590 ELMDV 594 (754)
Q Consensus 590 ~L~~l 594 (754)
.|.++
T Consensus 79 ~l~~~ 83 (85)
T 2ecw_A 79 HVANI 83 (85)
T ss_dssp CCCSS
T ss_pred HHHHh
Confidence 55433
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.16 E-value=8.2e-12 Score=114.42 Aligned_cols=73 Identities=32% Similarity=0.668 Sum_probs=60.4
Q ss_pred hhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccc-----ccCCC
Q 004418 511 KLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISE-----FLQNP 585 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~-----~~~~~ 585 (754)
.+++++.|+||+++|.+|++++|||+||..||..|+... ...||.||..+.. ...++
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~~~~~~~~~~~~ 72 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA------------------SLCCPFCRRRVSSWTRYHTRRNS 72 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT------------------TSBCTTTCCBCHHHHHHHHHTTC
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC------------------cCCCCCCCcccCccccccccccc
Confidence 345689999999999999999999999999999887532 3589999999863 23677
Q ss_pred cccHHHHHHHHHHHcc
Q 004418 586 QVNRELMDVIESLKHK 601 (754)
Q Consensus 586 ~~N~~L~~lve~l~~~ 601 (754)
.+|..|..+++.+...
T Consensus 73 ~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 73 LVNVELWTIIQKHYPR 88 (115)
T ss_dssp CBCHHHHHHHHHHSHH
T ss_pred hhhHHHHHHHHHHCCH
Confidence 8899999999887644
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3.1e-12 Score=110.06 Aligned_cols=67 Identities=27% Similarity=0.688 Sum_probs=54.9
Q ss_pred HHHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhcc-----CCccccccccccCcCccCCCCcchHHHHH
Q 004418 136 VLDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQ-----GKRTCAKCRHIIPPKMASQPRINSALVTA 205 (754)
Q Consensus 136 ~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~-----~~~~CP~CR~~~~~~~~~~~~~n~~L~~l 205 (754)
....+.+.+.|+||++.+.+|++++|||+||..|+..|+.. +...||.||..+.. ..+..|..|.++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~~~n~~l~~~ 83 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP---ENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS---SSCCCSCCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH---HhcCccHHHHHh
Confidence 34566788999999999999999999999999999999875 36789999999875 456666555443
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=1.4e-11 Score=111.89 Aligned_cols=73 Identities=25% Similarity=0.567 Sum_probs=57.3
Q ss_pred HHHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccC--CccccccccccCcCccCCCCcchHHHHHHHHHHh
Q 004418 136 VLDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQG--KRTCAKCRHIIPPKMASQPRINSALVTAIRMAKL 211 (754)
Q Consensus 136 ~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~--~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~ 211 (754)
....+.+.+.|+||++.+.+|++++|||+||..||..|+... ...||+||..+.. ..+..|..+.++++.++.
T Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~---~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 14 VINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK---RSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT---TTCBCCCSSSHHHHHHHH
T ss_pred HHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH---hhcCccHHHHHHHHHHHH
Confidence 344566788999999999999999999999999999999853 3589999999876 345555555555555543
No 39
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.5e-11 Score=108.99 Aligned_cols=72 Identities=24% Similarity=0.426 Sum_probs=62.1
Q ss_pred cccCCcccccCCCCCCCeecC-CCCcchhhhHHhhhccC-----Cccccc--cccc-cCcCccCCCCcchHHHHHHHHHH
Q 004418 140 LDGSLNCSFCMQLPERPVTTP-CGHNFCLKCFQKWIGQG-----KRTCAK--CRHI-IPPKMASQPRINSALVTAIRMAK 210 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Ci~~~~~~~-----~~~CP~--CR~~-~~~~~~~~~~~n~~L~~lie~~k 210 (754)
..+++.||||+++|.+||+++ |||+||..||..|+... ...||+ |+.. +.. ..+..|..|.++|+.++
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~---~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK---SDLIQDEALRRAIENHN 80 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG---GGEEECHHHHHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH---hhCcCCHHHHHHHHHHH
Confidence 356899999999999999996 99999999999999752 469999 9877 654 57899999999999998
Q ss_pred hhcc
Q 004418 211 LSKS 214 (754)
Q Consensus 211 ~~~~ 214 (754)
....
T Consensus 81 ~~~~ 84 (94)
T 2yu4_A 81 KKRH 84 (94)
T ss_dssp TTCC
T ss_pred HHhc
Confidence 7654
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.14 E-value=9.1e-12 Score=114.13 Aligned_cols=71 Identities=28% Similarity=0.595 Sum_probs=60.1
Q ss_pred cccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc----CccCCCCcchHHHHHHHHHH
Q 004418 140 LDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP----KMASQPRINSALVTAIRMAK 210 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~----~~~~~~~~n~~L~~lie~~k 210 (754)
+.+++.|+||+++|.+|++++|||+||..||..|+..+...||+||..+.. .....+..|..|..++..+.
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 445789999999999999999999999999999998767899999999863 12356778888888887765
No 41
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.1e-11 Score=104.70 Aligned_cols=58 Identities=24% Similarity=0.443 Sum_probs=49.7
Q ss_pred cccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHH
Q 004418 140 LDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSAL 202 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L 202 (754)
..+.+.|+||++.|.+|++++|||+||..||.+|+.. ...||+||..+.. .+..|..|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~----~~~~~~~l 69 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTGG----IFNPAKEL 69 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCCS----CCEECHHH
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCccccc----cCCcHHHH
Confidence 4567899999999999999999999999999999986 6799999999863 45666444
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.13 E-value=3.8e-11 Score=118.44 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=63.0
Q ss_pred hhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHH
Q 004418 511 KLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNRE 590 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~ 590 (754)
.+.++|.||||+++|.+||+++|||+||+.||..|+.... . .||.|+..+. ...+.+|..
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~-----------------~-tcP~t~~~l~--~~~L~pN~~ 161 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-----------------H-FDPVTRSPLT--QDQLIPNLA 161 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC-----------------S-BCTTTCCBCC--GGGCEECHH
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC-----------------C-CCCCCcCCCC--hhhCcchHH
Confidence 4568899999999999999999999999999999997432 1 6999999988 368999999
Q ss_pred HHHHHHHHHccc
Q 004418 591 LMDVIESLKHKT 602 (754)
Q Consensus 591 L~~lve~l~~~~ 602 (754)
|.++++.+....
T Consensus 162 Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 162 MKEVIDAFIQEN 173 (179)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC
Confidence 999999997654
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.12 E-value=2.9e-11 Score=117.84 Aligned_cols=74 Identities=23% Similarity=0.561 Sum_probs=60.6
Q ss_pred HhhhhccccccccccccCceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCccc
Q 004418 510 EKLLKEFSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVN 588 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N 588 (754)
..+.+.+.|+||++.|.+|+++ +|||+||..||..|+... ...||.||..+.. ...+.+|
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~~-~~~l~~~ 109 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG------------------NKECPTCRKKLVS-KRSLRPD 109 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT------------------CCBCTTTCCBCCS-GGGEEEC
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC------------------cCCCCCCCCcCCC-cccCCcC
Confidence 3456789999999999999988 999999999999998742 2479999999862 3468899
Q ss_pred HHHHHHHHHHHccc
Q 004418 589 RELMDVIESLKHKT 602 (754)
Q Consensus 589 ~~L~~lve~l~~~~ 602 (754)
..|.++++.+....
T Consensus 110 ~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 110 PNFDALISKIYPSR 123 (165)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcch
Confidence 99999999987643
No 44
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.3e-11 Score=102.07 Aligned_cols=53 Identities=26% Similarity=0.568 Sum_probs=47.7
Q ss_pred HHhcccCCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
+..+.+.+.|+||++.+.+|+++ +|||+||..||..|+.. ...||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 35567789999999999999997 99999999999999986 6799999999875
No 45
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.10 E-value=2.7e-11 Score=102.36 Aligned_cols=52 Identities=27% Similarity=0.804 Sum_probs=45.2
Q ss_pred hhhhccccccccccccCceecC-CCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 511 KLLKEFSCLICRQVMNLPITTP-CAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~Pv~lp-CgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+.+++.|+||+++|.+|++++ |||+||..||..|+.... ...||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-----------------~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-----------------EHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS-----------------SSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC-----------------CCcCCCCCCcCC
Confidence 4567899999999999999999 999999999999997431 358999999755
No 46
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.10 E-value=4.2e-11 Score=125.42 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=61.5
Q ss_pred hhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccHHHH
Q 004418 513 LKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNRELM 592 (754)
Q Consensus 513 ~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~~L~ 592 (754)
...|.||||+++|.+||+++|||+||..||..|+.... ..||.||..+. ...+.+|..|.
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~------------------~~cP~~~~~~~--~~~l~~n~~l~ 265 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG------------------HFNPVTRSPLT--QEQLIPNLAMK 265 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC------------------SSCTTTCCCCC--GGGCEECHHHH
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC------------------CCCcCCCCCCc--hhcCcccHHHH
Confidence 36899999999999999999999999999999997432 24999999998 46799999999
Q ss_pred HHHHHHHccc
Q 004418 593 DVIESLKHKT 602 (754)
Q Consensus 593 ~lve~l~~~~ 602 (754)
++|+.+....
T Consensus 266 ~~i~~~~~~~ 275 (281)
T 2c2l_A 266 EVIDAFISEN 275 (281)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHC
Confidence 9999998654
No 47
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=2.2e-11 Score=100.36 Aligned_cols=54 Identities=24% Similarity=0.665 Sum_probs=48.2
Q ss_pred HHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
...+.+.+.|+||++.+.+|++++|||+||..||.+|+......||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345677899999999999999999999999999999997557799999999865
No 48
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.09 E-value=2.6e-11 Score=118.23 Aligned_cols=75 Identities=25% Similarity=0.558 Sum_probs=62.1
Q ss_pred HhcccCCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhcc
Q 004418 138 DLLDGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKS 214 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~ 214 (754)
..+.+.+.|+||++.|.+|+++ +|||+||..||..|+..+...||+||..+... ..+..|..|.++|..+.....
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~--~~l~~~~~l~~~i~~~~~~~~ 124 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK--RSLRPDPNFDALISKIYPSRD 124 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG--GGEEECHHHHHHHHHHC----
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc--ccCCcCHHHHHHHHHHHcchh
Confidence 4456778999999999999998 99999999999999997678999999998642 468899999999998866543
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.09 E-value=1.9e-11 Score=112.69 Aligned_cols=74 Identities=26% Similarity=0.466 Sum_probs=61.1
Q ss_pred HHhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCccc
Q 004418 509 REKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVN 588 (754)
Q Consensus 509 ~~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N 588 (754)
...+++.+.|+||++++.+|++++|||+||..||..|+.... ..||.||..+.. ..+..+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------------------~~CP~Cr~~~~~--~~~~~~ 71 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG------------------HKCPVDNEILLE--NQLFPD 71 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC------------------SBCTTTCCBCCG--GGCEEC
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC------------------CCCCCCCCCcCH--HhcccC
Confidence 345678999999999999999999999999999999987442 279999999883 557788
Q ss_pred HHHHHHHHHHHccc
Q 004418 589 RELMDVIESLKHKT 602 (754)
Q Consensus 589 ~~L~~lve~l~~~~ 602 (754)
..+..++..+.-.=
T Consensus 72 ~~l~~~i~~l~v~C 85 (118)
T 3hct_A 72 NFAKREILSLMVKC 85 (118)
T ss_dssp HHHHHHHHTSEEEC
T ss_pred HHHHHHHccceeEC
Confidence 88888887765443
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.09 E-value=4.7e-11 Score=125.00 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=63.2
Q ss_pred cccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhc
Q 004418 140 LDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSK 213 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~ 213 (754)
+...+.|+||+++|.+||+++|||+||..||.+|+..+...||+||.++.. ..+.+|..|.++|+.+....
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~---~~l~~n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ---EQLIPNLAMKEVIDAFISEN 275 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG---GGCEECHHHHHHHHHHHTTC
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch---hcCcccHHHHHHHHHHHHHC
Confidence 346899999999999999999999999999999998655569999999976 57899999999999998654
No 51
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.5e-12 Score=108.97 Aligned_cols=69 Identities=26% Similarity=0.657 Sum_probs=52.9
Q ss_pred HhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcccH
Q 004418 510 EKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVNR 589 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N~ 589 (754)
+.+.+.+.|+||++.+.+|++++|||+||..||..|+.... .......||.||..+. ...+..|.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-------------~~~~~~~CP~Cr~~~~--~~~~~~n~ 78 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSM-------------LDKGESSCPVCRISYQ--PENIRPNR 78 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHH-------------HTTSCCCCTTTCCSSC--SSSCCCSC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhh-------------cCCCCCcCCCCCCccC--HHhcCccH
Confidence 34667899999999999999999999999999999987521 0012458999999988 34566665
Q ss_pred HHHH
Q 004418 590 ELMD 593 (754)
Q Consensus 590 ~L~~ 593 (754)
.|.+
T Consensus 79 ~l~~ 82 (85)
T 2ecv_A 79 HVAN 82 (85)
T ss_dssp CCCC
T ss_pred HHHH
Confidence 4433
No 52
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.8e-11 Score=100.13 Aligned_cols=51 Identities=31% Similarity=0.673 Sum_probs=45.0
Q ss_pred HhhhhccccccccccccCceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 510 EKLLKEFSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+.+++.+.|+||++.+.+|+++ +|||+||..||..|+... ..||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 61 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-------------------NRCPKCNIVVH 61 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-------------------SSCTTTCCCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-------------------CcCCCcCcccC
Confidence 3466789999999999999997 999999999999998643 37999999987
No 53
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.08 E-value=3.4e-11 Score=101.76 Aligned_cols=54 Identities=24% Similarity=0.620 Sum_probs=46.8
Q ss_pred HHhcccCCcccccCCCCCCCeecC-CCCcchhhhHHhhhccC-CccccccccccCc
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTP-CGHNFCLKCFQKWIGQG-KRTCAKCRHIIPP 190 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Ci~~~~~~~-~~~CP~CR~~~~~ 190 (754)
...+.+.+.|+||++.|.+|++++ |||+||..||..|+... ...||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 345677899999999999999999 99999999999999852 3689999997643
No 54
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=4.6e-11 Score=100.13 Aligned_cols=54 Identities=33% Similarity=0.830 Sum_probs=47.9
Q ss_pred HHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhcc--CCccccccccccCc
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQ--GKRTCAKCRHIIPP 190 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~--~~~~CP~CR~~~~~ 190 (754)
...+.+.+.|+||++.+.+|++++|||+||..||..|+.. ....||+||..+..
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3556788999999999999999999999999999999973 46789999999875
No 55
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.8e-11 Score=99.76 Aligned_cols=52 Identities=27% Similarity=0.750 Sum_probs=45.4
Q ss_pred HhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 510 EKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
..+++.+.|+||++.+.+|++++|||+||..||..|+... ...||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS------------------SPKCTACQESIV 61 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS------------------SCCCTTTCCCCC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC------------------cCCCCCCCcCCC
Confidence 4566789999999999999999999999999999998522 347999999887
No 56
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.07 E-value=7.1e-11 Score=116.49 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=63.3
Q ss_pred cccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhc
Q 004418 140 LDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSK 213 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~ 213 (754)
+.+.+.||||+++|.+||+++|||+||..||..|+.....+||+|+.++.. ..+.+|..|.++|+.+....
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~---~~L~pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ---DQLIPNLAMKEVIDAFIQEN 173 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG---GGCEECHHHHHHHHHHHHHC
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh---hhCcchHHHHHHHHHHHHHC
Confidence 457899999999999999999999999999999998633479999999976 57999999999999998654
No 57
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=3.3e-11 Score=104.57 Aligned_cols=64 Identities=28% Similarity=0.574 Sum_probs=52.6
Q ss_pred HhcccCCcccccCCCCCC----CeecCCCCcchhhhHHhhhccC--CccccccccccCcCccCCCCcchH
Q 004418 138 DLLDGSLNCSFCMQLPER----PVTTPCGHNFCLKCFQKWIGQG--KRTCAKCRHIIPPKMASQPRINSA 201 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~~----Pv~l~CgH~FC~~Ci~~~~~~~--~~~CP~CR~~~~~~~~~~~~~n~~ 201 (754)
..+.+.+.|+||++.|.+ |+.++|||+||..|+.+|+... ...||+||..+....+..+..|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~~ 79 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNLT 79 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECTT
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHHH
Confidence 456678999999999998 9999999999999999999863 479999999987644455555543
No 58
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=6.7e-11 Score=99.12 Aligned_cols=54 Identities=33% Similarity=0.807 Sum_probs=46.0
Q ss_pred HhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 510 EKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+.+++.+.|+||++.+.+|++++|||+||..||..|+.... ....||.||..+.
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~----------------~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC----------------GFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC----------------SCCCCSSSCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC----------------CCCCCCCCCCcCC
Confidence 34567899999999999999999999999999999986321 2458999999887
No 59
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.04 E-value=3.9e-11 Score=110.59 Aligned_cols=71 Identities=25% Similarity=0.458 Sum_probs=59.0
Q ss_pred HHHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHH
Q 004418 136 VLDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMA 209 (754)
Q Consensus 136 ~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~ 209 (754)
+...+.+.+.|+||++.+.+|++++|||+||..||..|+......||+||..+.. ..+..+..+.+++..+
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~---~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE---NQLFPDNFAKREILSL 81 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG---GGCEECHHHHHHHHTS
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH---HhcccCHHHHHHHccc
Confidence 3456778899999999999999999999999999999998745599999999876 3466777777766543
No 60
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=5.8e-11 Score=99.36 Aligned_cols=49 Identities=35% Similarity=0.726 Sum_probs=45.0
Q ss_pred ccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.+.+.|+||++.+.+|++++|||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 457899999999999999999999999999999987 5899999999875
No 61
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=8.3e-11 Score=95.91 Aligned_cols=48 Identities=38% Similarity=0.918 Sum_probs=43.0
Q ss_pred HHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhcc--CCcccccc
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQ--GKRTCAKC 184 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~--~~~~CP~C 184 (754)
.+.+.+.+.|+||++.+.+|++++|||+||..||.+|+.. ....||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567789999999999999999999999999999999974 46689998
No 62
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.00 E-value=9.4e-11 Score=107.51 Aligned_cols=68 Identities=22% Similarity=0.474 Sum_probs=53.8
Q ss_pred HhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHH
Q 004418 138 DLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIR 207 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie 207 (754)
..+.+.+.|+||++.+.+|++++|||+||..||.+|+......||+||..+.... ....+..+.+++.
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~--~~~~~~~l~~~i~ 85 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD--LESPVKSFLNILN 85 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG--CBCCCHHHHHHHH
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh--ccccHHHHHHHHH
Confidence 4556688999999999999999999999999999999875678999999987632 1233444555443
No 63
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.00 E-value=2e-10 Score=105.30 Aligned_cols=71 Identities=25% Similarity=0.613 Sum_probs=55.6
Q ss_pred HhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCC-Cccc
Q 004418 510 EKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQN-PQVN 588 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~-~~~N 588 (754)
..+.+.+.|+||++++.+|++++|||+||..||..|+... ...||.||..+.. .. ...+
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~~--~~~~~~~ 77 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVM------------------GSYCPSCRYPCFP--TDLESPV 77 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT------------------CSBCTTTCCBCCG--GGCBCCC
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC------------------cCcCCCCCCCCCH--hhccccH
Confidence 3456789999999999999999999999999999998742 2379999999873 22 2346
Q ss_pred HHHHHHHHHHHc
Q 004418 589 RELMDVIESLKH 600 (754)
Q Consensus 589 ~~L~~lve~l~~ 600 (754)
..+.+++..+.-
T Consensus 78 ~~l~~~i~~l~v 89 (116)
T 1rmd_A 78 KSFLNILNSLMV 89 (116)
T ss_dssp HHHHHHHHHCEE
T ss_pred HHHHHHHHHhcC
Confidence 666676666544
No 64
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.00 E-value=1.5e-10 Score=90.99 Aligned_cols=49 Identities=29% Similarity=0.771 Sum_probs=45.6
Q ss_pred cccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 13 EQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
..|.||+....+.++|.|+.|...||+.||. ||++.+|.++|+||.|..
T Consensus 1 a~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~-p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLILCDECNKAFHLFCLR-PALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCCTTTCCSSCCSCCEECTTTCCEECHHHHC-TTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCCEEECCCCChhhCcccCC-CCcCCCCCCcEECcCccc
Confidence 3699999988788999999999999999999 999999999999999974
No 65
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=6.4e-11 Score=102.73 Aligned_cols=53 Identities=30% Similarity=0.692 Sum_probs=45.9
Q ss_pred hhhhccccccccccccC----ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 511 KLLKEFSCLICRQVMNL----PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~----Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+++.+.|+||++.|.+ |++++|||+||..||..|+.... ....||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~----------------~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI----------------NGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS----------------SCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC----------------CCcCCCCCCCccc
Confidence 45678999999999999 99999999999999999987431 2458999999887
No 66
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.2e-10 Score=94.84 Aligned_cols=39 Identities=36% Similarity=0.801 Sum_probs=35.7
Q ss_pred HhhhhccccccccccccCceecCCCChhhHHhHHHHHcC
Q 004418 510 EKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAG 548 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~ 548 (754)
+.+++++.|+||++.+.+|++++|||+||..||..|+..
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET 53 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHH
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHc
Confidence 456679999999999999999999999999999999873
No 67
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.7e-10 Score=92.08 Aligned_cols=48 Identities=35% Similarity=0.924 Sum_probs=42.3
Q ss_pred HHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhcc--CCcccccc
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQ--GKRTCAKC 184 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~--~~~~CP~C 184 (754)
...+.+.+.|+||++.+.+|++++|||+||..||.+|+.. ....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456778999999999999999999999999999999754 46789998
No 68
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=4.1e-10 Score=95.99 Aligned_cols=54 Identities=30% Similarity=0.799 Sum_probs=48.9
Q ss_pred CCCCCCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCC-cccCCCCCC
Q 004418 7 LPCNLDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSL-SWLCPDCSG 62 (754)
Q Consensus 7 ~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~-~w~cp~cs~ 62 (754)
.-|... +|.||+......++|.|+.|...||+.||. |||+.+|.+ +|+||.|..
T Consensus 22 w~C~~c-~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~-Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 22 KKCHSC-SCRVCGGKHEPNMQLLCDECNVAYHIYCLN-PPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCCSSS-SCSSSCCCCCSTTEEECSSSCCEEETTSSS-SCCSSCCCSSCCCCTTTCC
T ss_pred eECCCC-CCcCcCCcCCCCCEEEcCCCCccccccccC-CCccCCCCCCCcCCcCccC
Confidence 346544 899999988889999999999999999999 999999999 999999974
No 69
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=1.9e-10 Score=94.41 Aligned_cols=49 Identities=22% Similarity=0.636 Sum_probs=43.5
Q ss_pred cCCcccccCC-CCCCC----eecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 142 GSLNCSFCMQ-LPERP----VTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~-~~~~P----v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
+++.|+||++ ++.+| ++++|||+||..||.+|+..+...||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4678999999 89888 4689999999999999987667889999999975
No 70
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.95 E-value=5.6e-10 Score=92.36 Aligned_cols=51 Identities=25% Similarity=0.616 Sum_probs=45.2
Q ss_pred CcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGVDGP 66 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~~~~ 66 (754)
+..|.||+.. .++|.|++|...||+.||. |||+.+|.++|+||.|+....+
T Consensus 12 ~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~-P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 12 GARCGVCGDG---TDVLRCTHCAAAFHWRCHF-PAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp TCCCTTTSCC---TTCEECSSSCCEECHHHHC-TTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCcCCCCCC---CeEEECCCCCCceecccCC-CccCcCCCCCEECccccCCCcc
Confidence 5689999853 4699999999999999999 9999999999999999976543
No 71
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.95 E-value=2.4e-10 Score=118.11 Aligned_cols=72 Identities=21% Similarity=0.362 Sum_probs=61.9
Q ss_pred hhhccccccccccccCceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCC--CCCCcccccCCCccc
Q 004418 512 LLKEFSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPS--CPTDISEFLQNPQVN 588 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~--CR~~v~~~~~~~~~N 588 (754)
...+|.||||+++|.+||++ .|||+||+.||..+|.... .+.||+ |+..+. ..++.+|
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~-----------------~~~CPvtGCr~~l~--~~dL~pN 238 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYT-----------------TRDCPQAACSQVVS--MRDFVRD 238 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCS-----------------CEECSGGGCSCEEC--GGGEEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCC-----------------CCCCCcccccCcCc--hhhCCcC
Confidence 45689999999999999985 9999999999999987432 468999 999887 4789999
Q ss_pred HHHHHHHHHHHccc
Q 004418 589 RELMDVIESLKHKT 602 (754)
Q Consensus 589 ~~L~~lve~l~~~~ 602 (754)
..|.++++.++...
T Consensus 239 ~~L~~lve~~k~r~ 252 (267)
T 3htk_C 239 PIMELRCKIAKMKE 252 (267)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998886653
No 72
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.95 E-value=1e-10 Score=111.42 Aligned_cols=74 Identities=23% Similarity=0.494 Sum_probs=56.8
Q ss_pred HHhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccc-------c
Q 004418 509 REKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISE-------F 581 (754)
Q Consensus 509 ~~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~-------~ 581 (754)
.+.|+++|.|+||+++|.+|++++|||+||..||..|+... ...||.||..+.. .
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~------------------~~~CP~Cr~~~~~~~~~~~l~ 86 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG------------------PQNCAACVHEGIYEEGISILE 86 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS------------------CEECHHHHHTTCCCTTTTEEC
T ss_pred hccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC------------------CCCCCCCCCcccccccccccc
Confidence 35778899999999999999999999999999999998633 3479999997531 0
Q ss_pred cCCCcccHHHHHHHHHHHc
Q 004418 582 LQNPQVNRELMDVIESLKH 600 (754)
Q Consensus 582 ~~~~~~N~~L~~lve~l~~ 600 (754)
...+.++..+...+..+.-
T Consensus 87 ~~~~~~d~~~~~~i~~L~v 105 (141)
T 3knv_A 87 SSSAFPDNAARREVESLPA 105 (141)
T ss_dssp GGGCEECHHHHHHHHTSEE
T ss_pred hhhhcccHHHHHHHccccc
Confidence 1234466667766665543
No 73
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.1e-10 Score=95.92 Aligned_cols=48 Identities=35% Similarity=0.741 Sum_probs=42.7
Q ss_pred hhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 513 LKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 513 ~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+.+.|+||++.+.+|++++|||.||..||..|+... ..||.||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-------------------KRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-------------------SBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-------------------CcCcCcCchhC
Confidence 3578999999999999999999999999999887543 37999999887
No 74
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.93 E-value=1.7e-10 Score=112.82 Aligned_cols=74 Identities=26% Similarity=0.459 Sum_probs=60.1
Q ss_pred HHHhhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCcc
Q 004418 508 VREKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQV 587 (754)
Q Consensus 508 ~~~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~ 587 (754)
|...|++.|.|+||+++|.+|++++|||+||..||..|+... ...||.||..+.. ..+.+
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~~--~~~~~ 70 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA------------------GHKCPVDNEILLE--NQLFP 70 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH------------------CSBCTTTCCBCCG--GGCEE
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC------------------CCCCCCCccCcch--hhhhh
Confidence 345677899999999999999999999999999999998743 1279999999883 45667
Q ss_pred cHHHHHHHHHHHcc
Q 004418 588 NRELMDVIESLKHK 601 (754)
Q Consensus 588 N~~L~~lve~l~~~ 601 (754)
+..+..++..+.-.
T Consensus 71 ~~~~~~~i~~l~v~ 84 (170)
T 3hcs_A 71 DNFAKREILSLMVK 84 (170)
T ss_dssp CHHHHHHHHTSEEE
T ss_pred hHHHHHHHhhcccC
Confidence 88787777765433
No 75
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=4.1e-10 Score=92.37 Aligned_cols=48 Identities=27% Similarity=0.749 Sum_probs=41.6
Q ss_pred hccccccccc-cccCc----eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQ-VMNLP----ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~-~~~~P----v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+++.|+||++ ++.+| ++++|||+||..||..|+... ...||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~------------------~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG------------------AGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT------------------SSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC------------------CCcCCCCCCccc
Confidence 4789999999 99999 578999999999999997633 347999999987
No 76
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.92 E-value=2.7e-10 Score=108.54 Aligned_cols=53 Identities=30% Similarity=0.693 Sum_probs=48.0
Q ss_pred HHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccC
Q 004418 137 LDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 137 ~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
...+.+.+.|+||+++|.+|++++|||+||..||.+|+..+...||+||..+.
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred hccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 35678899999999999999999999999999999999876679999999753
No 77
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.92 E-value=3.8e-10 Score=116.59 Aligned_cols=73 Identities=18% Similarity=0.371 Sum_probs=63.8
Q ss_pred HhcccCCcccccCCCCCCCeec-CCCCcchhhhHHhhhcc-CCccccc--cccccCcCccCCCCcchHHHHHHHHHHhhc
Q 004418 138 DLLDGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQ-GKRTCAK--CRHIIPPKMASQPRINSALVTAIRMAKLSK 213 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~-~~~~CP~--CR~~~~~~~~~~~~~n~~L~~lie~~k~~~ 213 (754)
......+.||||+++|.+||++ .|||+||..||..||.. +...||+ |+..+.. ..+.+|..|.++++.++...
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~---~dL~pN~~L~~lve~~k~r~ 252 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM---RDFVRDPIMELRCKIAKMKE 252 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG---GGEEECHHHHHHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch---hhCCcCHHHHHHHHHHHHHH
Confidence 3456789999999999999985 99999999999999986 3578999 9999876 57899999999999887654
No 78
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.7e-10 Score=95.32 Aligned_cols=51 Identities=33% Similarity=0.779 Sum_probs=45.3
Q ss_pred hcccCCcccccCCCCCCC-------eecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 139 LLDGSLNCSFCMQLPERP-------VTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.+.+.+.|+||++.+.+| +.++|||.||..||.+|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 446788999999999887 88999999999999999987 6799999998864
No 79
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.91 E-value=2.9e-10 Score=94.58 Aligned_cols=50 Identities=34% Similarity=0.809 Sum_probs=44.9
Q ss_pred cccCCcccccCCCCCCC-------eecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 140 LDGSLNCSFCMQLPERP-------VTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
..+.+.|+||++.+.+| +.++|||.||..||.+|+.. ...||+||..+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 34678999999999888 88999999999999999987 5799999999875
No 80
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.90 E-value=3.1e-10 Score=94.39 Aligned_cols=49 Identities=31% Similarity=0.728 Sum_probs=43.6
Q ss_pred hhhccccccccccccCc-------eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 512 LLKEFSCLICRQVMNLP-------ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~P-------v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.++.+.|+||++.+.+| ++++|||.||..||..|+... ..||.||..+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------------------NTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-------------------SBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-------------------CCCCCCCCccC
Confidence 45689999999999998 899999999999999998643 27999999987
No 81
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=5.7e-10 Score=89.04 Aligned_cols=39 Identities=36% Similarity=0.843 Sum_probs=35.2
Q ss_pred HhhhhccccccccccccCceecCCCChhhHHhHHHHHcC
Q 004418 510 EKLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAG 548 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~ 548 (754)
+.+.+.+.|+||++.+.+|++++|||+||..||..|+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~ 48 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWED 48 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTS
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHh
Confidence 345678999999999999999999999999999999764
No 82
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.88 E-value=8.4e-10 Score=93.74 Aligned_cols=51 Identities=25% Similarity=0.635 Sum_probs=44.0
Q ss_pred hcccCCcccccCCCCCCC---eecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 139 LLDGSLNCSFCMQLPERP---VTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~~P---v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.+...+.|+||++.|..+ +.++|||.||..||.+|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG 64 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence 345678999999999866 45699999999999999987 5799999999875
No 83
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=4.6e-10 Score=92.63 Aligned_cols=50 Identities=30% Similarity=0.731 Sum_probs=43.4
Q ss_pred hhhhccccccccccccCc-------eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 511 KLLKEFSCLICRQVMNLP-------ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~P-------v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+.+.+.|+||++.+.+| ++++|||.||..||..|+... ..||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------------------NTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC-------------------SSCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC-------------------CCCCCCCCccC
Confidence 345689999999999988 889999999999999998743 27999999876
No 84
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.88 E-value=1.2e-09 Score=86.41 Aligned_cols=49 Identities=33% Similarity=0.889 Sum_probs=42.9
Q ss_pred cccCCcccccCCCCCC---CeecC-CCCcchhhhHHhhhccCCccccccccccC
Q 004418 140 LDGSLNCSFCMQLPER---PVTTP-CGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 140 l~~~l~C~IC~~~~~~---Pv~l~-CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
+++...|+||++.+.. ++.++ |||.||..||.+|+.. ...||+||+.+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 4567899999999987 77886 9999999999999987 779999998764
No 85
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.87 E-value=1e-09 Score=93.97 Aligned_cols=53 Identities=26% Similarity=0.652 Sum_probs=44.3
Q ss_pred HhcccCCcccccCCCCC--CCeecC--CCCcchhhhHHhhhccCCccccccccccCc
Q 004418 138 DLLDGSLNCSFCMQLPE--RPVTTP--CGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~--~Pv~l~--CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
..+++++.|+||++.+. ++++++ |||+||..|+..++......||.||..+..
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34567899999999884 455555 999999999999987667899999999976
No 86
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.86 E-value=1e-09 Score=91.86 Aligned_cols=53 Identities=30% Similarity=0.909 Sum_probs=47.5
Q ss_pred CCCCCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCC-cccCCCCCC
Q 004418 8 PCNLDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSL-SWLCPDCSG 62 (754)
Q Consensus 8 ~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~-~w~cp~cs~ 62 (754)
-|..= .|.+|+......++|.|+.|...||+.||. |||+.+|.+ +|+||.|..
T Consensus 15 ~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~-Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 15 LCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp CCTTT-SBTTTCCCSCGGGEEECTTTCCEEEGGGSS-SCCSSCCSSSCCCCTTTSC
T ss_pred ECCCC-CCcCCCCcCCCCCEEEcCCCCCceecccCC-CCcCCCCCCCCcCCcCccC
Confidence 35444 788999888888999999999999999999 999999999 999999974
No 87
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=4.6e-10 Score=99.10 Aligned_cols=55 Identities=24% Similarity=0.544 Sum_probs=50.3
Q ss_pred CCCCCCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 7 LPCNLDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 7 ~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
-.|..+.+|.||+....+..+|.|+.|...||+.||. |||+.+|.++|+||.|..
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~-Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLL-PPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSS-SCCSSCCSSCCCCHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCC-CCcccCCCCCcCCccCcC
Confidence 4577788999999987778899999999999999999 999999999999999963
No 88
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.86 E-value=4.6e-10 Score=109.83 Aligned_cols=71 Identities=25% Similarity=0.458 Sum_probs=58.7
Q ss_pred HHHhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHH
Q 004418 136 VLDLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMA 209 (754)
Q Consensus 136 ~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~ 209 (754)
+...+.+.+.|+||+++|.+|++++|||+||..||.+|+......||+||..+.. ..+..+..+.++|..+
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~---~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE---NQLFPDNFAKREILSL 81 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG---GGCEECHHHHHHHHTS
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch---hhhhhhHHHHHHHhhc
Confidence 4556788999999999999999999999999999999998645699999999876 3455666666666543
No 89
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.86 E-value=9.2e-10 Score=94.22 Aligned_cols=52 Identities=17% Similarity=0.453 Sum_probs=42.5
Q ss_pred Hhhhhcccccccccccc--CceecC--CCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 510 EKLLKEFSCLICRQVMN--LPITTP--CAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~--~Pv~lp--CgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
..+++++.||||++.+. +++++| |||+||..|+..++... .+.||.||..+.
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~------------------~~~CP~CR~~~~ 61 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE------------------NGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS------------------CSBCTTTCCBCS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC------------------CCCCCCCCCccC
Confidence 34678999999999884 456665 99999999999887532 358999999887
No 90
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.85 E-value=8.3e-10 Score=93.34 Aligned_cols=51 Identities=29% Similarity=0.600 Sum_probs=45.3
Q ss_pred hHHHhcccCCcccccCCCCCCCeecCCCCc-chhhhHHhhhccCCccccccccccCc
Q 004418 135 DVLDLLDGSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 135 ~~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
..+..+.+++.|+||++.+.+|++++|||. ||..|+..| ..||+||..+..
T Consensus 16 ~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 16 EQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred HHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 345667778899999999999999999999 999999987 589999999875
No 91
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.84 E-value=2.7e-09 Score=86.94 Aligned_cols=48 Identities=38% Similarity=0.877 Sum_probs=43.4
Q ss_pred CCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 11 LDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
.+..|.||+. ..++|.|++|...||+.||. ||++.+|.++|+||.|..
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~-ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 8 HMEFCRVCKD---GGELLCCDTCPSSYHIHCLN-PPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SCSSCTTTCC---CSSCBCCSSSCCCBCSSSSS-SCCSSCCSSCCCCTTTTT
T ss_pred CCCcCCCCCC---CCCEEEcCCCCHHHcccccC-CCcCcCCCCccCChhhcC
Confidence 3678999986 34899999999999999999 999999999999999975
No 92
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=4.3e-10 Score=89.86 Aligned_cols=45 Identities=33% Similarity=0.827 Sum_probs=39.6
Q ss_pred hhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 513 LKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 513 ~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
++.+.|+||++.|.+|++|+|||+||..||..+ ...||.||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----------------------~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----------------------GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----------------------SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----------------------CCCCCcCCcEee
Confidence 357999999999999999999999999998751 347999999887
No 93
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=5.4e-10 Score=92.90 Aligned_cols=51 Identities=33% Similarity=0.856 Sum_probs=45.6
Q ss_pred HhcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 138 DLLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
..+.+.+.|+||++.+.+ +.++|||.||..|+.+|+.. ...||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccC
Confidence 345678899999999999 99999999999999999985 7899999998875
No 94
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1.1e-09 Score=87.53 Aligned_cols=45 Identities=27% Similarity=0.613 Sum_probs=40.4
Q ss_pred cCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 142 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
+.+.|+||++.|.+|++|+|||+||..|+..| ...||+||..+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 57899999999999999999999999999873 5689999998864
No 95
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.82 E-value=6e-10 Score=90.55 Aligned_cols=48 Identities=33% Similarity=0.793 Sum_probs=43.4
Q ss_pred cCCcccccCCCCCCC-------eecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 142 GSLNCSFCMQLPERP-------VTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
+.+.|+||++.+.+| +.++|||.||..|+.+|+.. ...||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 467899999999887 78899999999999999987 7799999999875
No 96
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=1.5e-09 Score=88.39 Aligned_cols=54 Identities=30% Similarity=0.709 Sum_probs=49.0
Q ss_pred CCCCCCCCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 5 IQLPCNLDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 5 ~~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
..++.+.+..|.+|+.. .++|.|++|...||+.||. ||++.+|.+.|+||.|..
T Consensus 4 ~~~~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~-p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 4 GSYETDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLD-PDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCSSCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHC-TTCCSCCCSSCCCTTGGG
T ss_pred CcccCCCCCCCccCCCC---CcEEECCCCChhhhhhccC-CCCCCCCCCceECccccc
Confidence 45778889999999973 5899999999999999999 999999999999999974
No 97
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.81 E-value=1e-09 Score=89.10 Aligned_cols=47 Identities=32% Similarity=0.800 Sum_probs=41.8
Q ss_pred hccccccccccccCc-------eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLP-------ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~P-------v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+.+.|+||++.+.+| ++++|||.||..||..|+.... .||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------------~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-------------------TCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-------------------BCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-------------------CCCCCCccCC
Confidence 468999999999987 8899999999999999987432 7999999887
No 98
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.81 E-value=1.9e-09 Score=85.04 Aligned_cols=47 Identities=23% Similarity=0.627 Sum_probs=41.4
Q ss_pred cCCcccccCCCCCC----CeecCCCCcchhhhHHhhhccCCccccccccccC
Q 004418 142 GSLNCSFCMQLPER----PVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~~~~~----Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
....|+||++.+.+ ++.++|||.||..||.+|+.. ...||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 45789999999865 778899999999999999987 489999998774
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.80 E-value=8.4e-09 Score=89.71 Aligned_cols=55 Identities=18% Similarity=0.458 Sum_probs=49.0
Q ss_pred CCCCCCCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCCC
Q 004418 6 QLPCNLDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGVD 64 (754)
Q Consensus 6 ~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~~ 64 (754)
.+-.+.+..|.+|+... ++|.|++|...||+.||. |||+.+|.++|+||.|...+
T Consensus 19 ~~~d~n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~-PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 19 GTLDDSATICRVCQKPG---DLVMCNQCEFCFHLDCHL-PALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp CSSSSSSSCCSSSCSSS---CCEECTTSSCEECTTSSS-TTCCCCCSSSCCCCSCCCCC
T ss_pred cccCCCCCcCcCcCCCC---CEEECCCCCCceecccCC-CCCCCCcCCCcCCccccCCC
Confidence 35678889999999753 799999999999999999 99999999999999998643
No 100
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.79 E-value=2e-09 Score=91.03 Aligned_cols=49 Identities=35% Similarity=0.630 Sum_probs=43.1
Q ss_pred HHhhhhccccccccccccCceecCCCCh-hhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccc
Q 004418 509 REKLLKEFSCLICRQVMNLPITTPCAHN-FCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISE 580 (754)
Q Consensus 509 ~~~L~e~l~CpIC~~~~~~Pv~lpCgHs-FC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~ 580 (754)
.+.+++++.|+||++.+.+|+++||||. ||..|+..+ ..||.||..+..
T Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----------------------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----------------------SBCTTTCCBCSE
T ss_pred HhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----------------------ccCCCcCcCccC
Confidence 4566788999999999999999999999 999998755 279999999873
No 101
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.79 E-value=2e-09 Score=91.41 Aligned_cols=49 Identities=24% Similarity=0.628 Sum_probs=41.9
Q ss_pred hhhccccccccccccCc---eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 512 LLKEFSCLICRQVMNLP---ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~P---v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+.+.+.|+||++.|..+ ++++|+|.||..||..|+... ..||.||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 63 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-------------------DSCPVCRKSLT 63 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-------------------CSCTTTCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-------------------CcCcCcCCccC
Confidence 44689999999999876 457999999999999998643 27999999987
No 102
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.79 E-value=2.1e-09 Score=88.73 Aligned_cols=48 Identities=31% Similarity=0.854 Sum_probs=42.8
Q ss_pred cCCcccccCCCCCCC-eecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 142 GSLNCSFCMQLPERP-VTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~P-v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
....|+||++.+.+| +.++|||.||..|+.+|+.. ...||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999999997 77899999999999999987 5799999998864
No 103
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.79 E-value=2e-09 Score=89.22 Aligned_cols=49 Identities=29% Similarity=0.706 Sum_probs=42.3
Q ss_pred ccCCcccccCCCCC---CCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPE---RPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.....|+||++.|. .++.++|||.||..||.+|+.. ...||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 35678999999885 4577899999999999999987 5689999999875
No 104
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.79 E-value=1.7e-09 Score=89.25 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=41.8
Q ss_pred hccccccccccccCc-eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccc
Q 004418 514 KEFSCLICRQVMNLP-ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISE 580 (754)
Q Consensus 514 e~l~CpIC~~~~~~P-v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~ 580 (754)
....|+||++.+.+| ++++|||.||..|+..|+... ..||.||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-------------------PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-------------------CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-------------------CcCcCCChhhHh
Confidence 467899999999997 788999999999999998643 279999998873
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.78 E-value=2.8e-09 Score=90.76 Aligned_cols=53 Identities=30% Similarity=0.911 Sum_probs=46.6
Q ss_pred CCCCCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCc-ccCCCCCC
Q 004418 8 PCNLDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLS-WLCPDCSG 62 (754)
Q Consensus 8 ~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~-w~cp~cs~ 62 (754)
-|..= .|.+|+....+..+|.|+.|...||+.||. |||+.+|.++ |+||.|..
T Consensus 23 ~C~~C-~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~-PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 23 LCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp CCTTT-SBTTTCCCSCGGGEEECTTTCCEEETTTSS-SCCSSCCSSSCCCCTTTC-
T ss_pred CCCCC-cCCccCCCCCCcceeEeCCCCCccCcccCC-CcccCCCCCCceECcCccc
Confidence 34433 699999888888999999999999999999 9999999998 99999974
No 106
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.78 E-value=1.9e-09 Score=85.18 Aligned_cols=49 Identities=20% Similarity=0.575 Sum_probs=41.7
Q ss_pred hhhccccccccccccC---ceecC-CCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 512 LLKEFSCLICRQVMNL---PITTP-CAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~---Pv~lp-CgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+++...|+||++.+.. ++.++ |+|.||..||..|+... ..||.||..+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-------------------~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-------------------STCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-------------------CSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-------------------CcCcCCCCEeE
Confidence 4678899999999988 78887 99999999999997643 27999998764
No 107
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.8e-09 Score=90.24 Aligned_cols=52 Identities=29% Similarity=0.595 Sum_probs=44.8
Q ss_pred hhHHHhcccCCcccccCCCCCCCeecCCCCc-chhhhHHhhhccCCccccccccccCc
Q 004418 134 SDVLDLLDGSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 134 ~~~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.+..+.+.+.+.|+||++.+.+|++++|||. ||..|+.. ...||+||..+..
T Consensus 16 ~~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 16 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred HHHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 3445666778899999999999999999999 99999965 3689999999865
No 108
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.7e-09 Score=90.88 Aligned_cols=51 Identities=25% Similarity=0.605 Sum_probs=43.8
Q ss_pred hcccCCcccccCCCCCCCeec---CCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 139 LLDGSLNCSFCMQLPERPVTT---PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~~Pv~l---~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.+.....|+||++.|..+..+ +|+|.||..||.+|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 455678999999999877554 99999999999999987 5699999999864
No 109
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.76 E-value=2.6e-09 Score=93.86 Aligned_cols=49 Identities=29% Similarity=0.786 Sum_probs=43.3
Q ss_pred ccCCcccccCCCCCC---CeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPER---PVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.++..|+||++.|.. ++.++|||.||..||..|+.. ...||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 356789999999887 778999999999999999987 6799999998864
No 110
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.74 E-value=3e-09 Score=83.88 Aligned_cols=47 Identities=26% Similarity=0.616 Sum_probs=40.5
Q ss_pred hccccccccccccC----ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNL----PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~----Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
....|+||++.+.+ +++++|+|.||..||..|+... ..||.||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-------------------YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-------------------CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-------------------CcCCCCCCcCC
Confidence 46889999999976 7889999999999999998743 37999999764
No 111
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=4.6e-09 Score=88.89 Aligned_cols=49 Identities=35% Similarity=0.630 Sum_probs=42.0
Q ss_pred HHhhhhccccccccccccCceecCCCCh-hhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccc
Q 004418 509 REKLLKEFSCLICRQVMNLPITTPCAHN-FCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISE 580 (754)
Q Consensus 509 ~~~L~e~l~CpIC~~~~~~Pv~lpCgHs-FC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~ 580 (754)
.+.+++.+.|+||++.+.+|+++||||. ||..|+... ..||.||..+..
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----------------------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----------------------DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----------------------SBCTTTCCBCCC
T ss_pred HHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----------------------CCCccCCceecC
Confidence 4456678999999999999999999999 999999531 379999999874
No 112
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=2.7e-09 Score=90.02 Aligned_cols=49 Identities=37% Similarity=0.748 Sum_probs=43.3
Q ss_pred ccCCcccccCCCCCCC---eecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPERP---VTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~P---v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.+...|+||++.|..+ +.++|+|.||..||.+|+.. ...||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4567899999999877 67899999999999999987 6789999998864
No 113
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.72 E-value=4.5e-09 Score=87.02 Aligned_cols=48 Identities=29% Similarity=0.660 Sum_probs=40.9
Q ss_pred hhcccccccccccc---CceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 513 LKEFSCLICRQVMN---LPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 513 ~e~l~CpIC~~~~~---~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.....|+||++.|. .+++++|||.||..||..|+.... .||.||..+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-------------------~CP~Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-------------------KCPICRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-------------------BCTTTCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-------------------CCcCcCcccc
Confidence 35789999999885 467899999999999999987542 6999999887
No 114
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.72 E-value=4.7e-09 Score=86.92 Aligned_cols=50 Identities=32% Similarity=0.810 Sum_probs=45.2
Q ss_pred CCCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCC
Q 004418 10 NLDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
+.+..|.||+.. .++|.|++|...||+.||. |||+.+|.+.|+||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~-ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLS-PPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSS-SCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccC-CCcCcCCCCCeECccccCc
Confidence 468899999974 4799999999999999999 9999999999999999743
No 115
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=4e-09 Score=84.43 Aligned_cols=47 Identities=30% Similarity=0.894 Sum_probs=42.8
Q ss_pred CCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 11 LDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
.+..|.||+.. .++|.|+.|...||+.||. ||++.+|.+.|+||.|.
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~-ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLD-PPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSS-SCCCSCCCSSCCCHHHH
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCC-CCcCCCCCCceEChhhh
Confidence 46789999874 4899999999999999999 99999999999999995
No 116
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.70 E-value=3.2e-09 Score=91.01 Aligned_cols=64 Identities=22% Similarity=0.508 Sum_probs=47.2
Q ss_pred HHHhcccCCcccccCCCCCCCeecCCCCc-chhhhHHhhhccCCccccccccccCcCccCCCCcchHHHH
Q 004418 136 VLDLLDGSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVT 204 (754)
Q Consensus 136 ~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~ 204 (754)
.++.+.+...|+||++.+.+++++||||. ||..|+..+ ..||+||..+.....-.+..+..+.+
T Consensus 11 ~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~p~~~~~~~ 75 (79)
T 2yho_A 11 KLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQHVYLPTHTSLLN 75 (79)
T ss_dssp HHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEEECBCTTCCC---
T ss_pred HHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCeEEEEeCcchhhhh
Confidence 34556677899999999999999999999 999999875 38999999987532112334444443
No 117
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.70 E-value=6.1e-09 Score=105.57 Aligned_cols=52 Identities=31% Similarity=0.942 Sum_probs=43.1
Q ss_pred CCCCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCC-cccCCCCCC
Q 004418 9 CNLDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSL-SWLCPDCSG 62 (754)
Q Consensus 9 ~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~-~w~cp~cs~ 62 (754)
|... .|.+|+.......+|.|+.|...||+.||. |||+.+|.+ +|+||.|..
T Consensus 172 C~~c-~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~-PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 172 CRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp CTTT-SCSSSCCCCC--CCEECSSSCCEECSCC---CCCCSCCSSSCCCCGGGC-
T ss_pred cCCC-CCcCCCCCCCCCCeEEcCCCCcceeCccCC-CCcccCCCCCCCCCcCCcC
Confidence 4433 799999988889999999999999999999 999999999 999999974
No 118
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.69 E-value=4.6e-09 Score=85.27 Aligned_cols=47 Identities=30% Similarity=0.894 Sum_probs=43.1
Q ss_pred CCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 11 LDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
.+.+|.||+.. .++|.|+.|...||+.||. ||++.+|.+.|+||.|.
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~-ppl~~~p~g~W~C~~C~ 50 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLD-PPLKTIPKGMWICPRCQ 50 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSS-SCCSSCCCSCCCCHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCC-CCcCCCCCCceEChhcc
Confidence 36789999874 4899999999999999999 99999999999999996
No 119
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.69 E-value=5.7e-09 Score=91.62 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=41.8
Q ss_pred hhccccccccccccC---ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 513 LKEFSCLICRQVMNL---PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 513 ~e~l~CpIC~~~~~~---Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.++..|+||++.|.. ++.++|+|.||..||..|+.... .||.||..+.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-------------------~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-------------------TCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-------------------BCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-------------------cCcCcCccCC
Confidence 457899999999987 78899999999999999986442 7999999876
No 120
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.2e-09 Score=90.78 Aligned_cols=49 Identities=31% Similarity=0.739 Sum_probs=42.7
Q ss_pred hhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 511 KLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+.+.+.|+||++.+.+ ++++|||.||..||..|+... ..||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~-------------------~~CP~Cr~~~~ 59 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRH-------------------RNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCC-------------------SSCHHHHHCTT
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCc-------------------CcCCCcCCccc
Confidence 34568999999999999 999999999999999987633 37999999887
No 121
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.67 E-value=4e-09 Score=97.95 Aligned_cols=49 Identities=35% Similarity=0.841 Sum_probs=44.9
Q ss_pred ccCCcccccCCCCCCC-------eecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 141 DGSLNCSFCMQLPERP-------VTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.+.+.|+||++.|.+| +.++|||+||..||.+|+.. ...||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 4678999999999998 89999999999999999987 6799999999875
No 122
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.67 E-value=1.1e-08 Score=93.32 Aligned_cols=48 Identities=27% Similarity=0.603 Sum_probs=40.9
Q ss_pred CCcccccCCCCCCCe------------------ecCCCCcchhhhHHhhhc----cCCccccccccccCc
Q 004418 143 SLNCSFCMQLPERPV------------------TTPCGHNFCLKCFQKWIG----QGKRTCAKCRHIIPP 190 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv------------------~l~CgH~FC~~Ci~~~~~----~~~~~CP~CR~~~~~ 190 (754)
+..|+||++.|..|+ .++|+|.||..||..|+. .....||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999999997765 679999999999999995 235799999998865
No 123
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=7.4e-09 Score=86.94 Aligned_cols=50 Identities=24% Similarity=0.531 Sum_probs=41.9
Q ss_pred hhhccccccccccccCcee---cCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccc
Q 004418 512 LLKEFSCLICRQVMNLPIT---TPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISE 580 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~---lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~ 580 (754)
+.....|+||++.|..+.. ++|+|.||..||..|+.... .||.||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-------------------~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-------------------VCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-------------------BCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-------------------cCCCcCccccc
Confidence 4467899999999988754 49999999999999987442 79999998873
No 124
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.64 E-value=7.2e-09 Score=90.69 Aligned_cols=52 Identities=23% Similarity=0.679 Sum_probs=45.3
Q ss_pred CCCcccccccCCCC--CCCceecCCCCCcccccCCCCCCCcc----ccCCcccCCCCCC
Q 004418 10 NLDEQCMRCKVKPR--PEETITCSTCVTPWHVACLTKPPETL----ASSLSWLCPDCSG 62 (754)
Q Consensus 10 ~~~~~c~~c~~~~~--~~~~l~c~~c~~~~h~~cl~~~p~~~----~~~~~w~cp~cs~ 62 (754)
+.+.+|.||+.... +..+|.|++|...||+.||. |||+. +|.+.|+|+.|..
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~-Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHK-PQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS-SCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCC-CcccccccCCCCCCeeCccccc
Confidence 34678999998543 47899999999999999999 99985 8999999999974
No 125
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=6.2e-09 Score=87.76 Aligned_cols=47 Identities=23% Similarity=0.654 Sum_probs=41.2
Q ss_pred hccccccccccccCc---eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLP---ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~P---v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+...|+||++.|..+ +.++|+|.||..||..|+.... .||.||..+.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-------------------~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-------------------TCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-------------------SCTTTCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-------------------cCcCcCCcCC
Confidence 478899999999987 7789999999999999986432 7999999876
No 126
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.63 E-value=9e-09 Score=95.55 Aligned_cols=48 Identities=31% Similarity=0.778 Sum_probs=43.2
Q ss_pred hhccccccccccccCc-------eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 513 LKEFSCLICRQVMNLP-------ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 513 ~e~l~CpIC~~~~~~P-------v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+++.|+||++.|.+| ++++|||+||..||..|+.... .||.||..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------------~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-------------------TCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-------------------BCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-------------------CCCCCCCcCc
Confidence 3689999999999999 9999999999999999987542 7999999887
No 127
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.58 E-value=1.3e-08 Score=84.18 Aligned_cols=52 Identities=29% Similarity=0.667 Sum_probs=44.8
Q ss_pred CCcccccccCC--CCCCCceecCCCCCcccccCCCCCCCcc--c-cCCcccCCCCCCC
Q 004418 11 LDEQCMRCKVK--PRPEETITCSTCVTPWHVACLTKPPETL--A-SSLSWLCPDCSGV 63 (754)
Q Consensus 11 ~~~~c~~c~~~--~~~~~~l~c~~c~~~~h~~cl~~~p~~~--~-~~~~w~cp~cs~~ 63 (754)
.+.+|.||+.. ..+..+|.|+.|...||+.||. ||++. + |.+.|+|+.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~-p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHT-PHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSS-SCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCC-CcccccccCCCCCEECCCCcCc
Confidence 46789999986 3558889999999999999999 99886 3 8899999999753
No 128
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.57 E-value=1.5e-08 Score=92.98 Aligned_cols=48 Identities=27% Similarity=0.745 Sum_probs=44.8
Q ss_pred cccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 13 EQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
.+|.||+....+..+|.|+.|...||+.||. |||+.+|.++|+||.|.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~-ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLN-PPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSS-SCCSSCCSSCCCCHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccC-CCccCCCCCCeECcccc
Confidence 4789999887888999999999999999999 99999999999999995
No 129
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.56 E-value=1.1e-08 Score=87.69 Aligned_cols=49 Identities=27% Similarity=0.687 Sum_probs=42.5
Q ss_pred HHhhhhccccccccccccCceecCCCCh-hhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccc
Q 004418 509 REKLLKEFSCLICRQVMNLPITTPCAHN-FCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISE 580 (754)
Q Consensus 509 ~~~L~e~l~CpIC~~~~~~Pv~lpCgHs-FC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~ 580 (754)
.+.+++...|+||++.+.+|+++||||. ||..|+..+ ..||.||..+..
T Consensus 12 ~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----------------------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 12 LRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----------------------QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----------------------SBCTTTCCBCCE
T ss_pred HHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----------------------CcCCCCCchhhC
Confidence 4456778999999999999999999999 999998743 269999999984
No 130
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.55 E-value=3e-08 Score=90.29 Aligned_cols=51 Identities=31% Similarity=0.699 Sum_probs=40.8
Q ss_pred ccccccccccccCce------------------ecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCC
Q 004418 515 EFSCLICRQVMNLPI------------------TTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPT 576 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv------------------~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~ 576 (754)
+..|+||++.|..|. +++|+|.||..||..|+.... ......||+||.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~--------------~~~~~~CP~CR~ 90 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN--------------KDGSLQCPSCKT 90 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC--------------CSSCCBCTTTCC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc--------------CCCCCcCCCCCC
Confidence 468999999997765 789999999999999985321 112458999999
Q ss_pred Ccc
Q 004418 577 DIS 579 (754)
Q Consensus 577 ~v~ 579 (754)
.+.
T Consensus 91 ~~~ 93 (114)
T 1v87_A 91 IYG 93 (114)
T ss_dssp BSS
T ss_pred ccC
Confidence 887
No 131
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=4.2e-08 Score=84.28 Aligned_cols=48 Identities=23% Similarity=0.515 Sum_probs=40.7
Q ss_pred cCCcccccCCCCCC--------------Ceec-CCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 142 GSLNCSFCMQLPER--------------PVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~--------------Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
++..|+||++.|.. ++.+ +|+|.||..||.+|+.. ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 46679999999976 4455 59999999999999997 5799999998864
No 132
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.51 E-value=8.1e-08 Score=104.22 Aligned_cols=53 Identities=34% Similarity=0.676 Sum_probs=47.4
Q ss_pred chhHHHhcccCCcccccCCCCCCCeecCCCCc-chhhhHHhhhccCCccccccccccCc
Q 004418 133 DSDVLDLLDGSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 133 ~~~~~~~l~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
....+..+.+++.|+||++.+.+|++++|||. ||..|+..| ..||+||..+..
T Consensus 285 ~~~~~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 285 LEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred HHHHHHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 34567778899999999999999999999999 999999987 579999999875
No 133
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.49 E-value=4.9e-08 Score=106.76 Aligned_cols=52 Identities=25% Similarity=0.612 Sum_probs=45.9
Q ss_pred hcccCCcccccCCCCCCCeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 139 LLDGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.......|+||++.+.+|+.++|||.||..|+..|+......||+||..+..
T Consensus 328 ~~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 328 MGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TTTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred hcCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3445689999999999999999999999999999988447899999999865
No 134
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.48 E-value=3.6e-08 Score=89.89 Aligned_cols=53 Identities=26% Similarity=0.681 Sum_probs=47.1
Q ss_pred CCCCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 9 CNLDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 9 ~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
|..=.+|.+|+....+..+|.|+.|...||+.||. |||+.+|.++|+||.|..
T Consensus 51 C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~-ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 51 CPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQ-PVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSS-SCCSSCCSSCCCCHHHHC
T ss_pred CCcCCcccccCccCCCCCeeECCCCCcHHhHHhcC-CccccCCCCCcCCcCCcC
Confidence 44334799999888888899999999999999999 999999999999999974
No 135
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.45 E-value=2.4e-08 Score=88.11 Aligned_cols=55 Identities=24% Similarity=0.604 Sum_probs=42.2
Q ss_pred hccccccccccccCceec---CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCC--CCCC--cc
Q 004418 514 KEFSCLICRQVMNLPITT---PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPS--CPTD--IS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~l---pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~--CR~~--v~ 579 (754)
+.++|+||++.+..|+++ +|||+||..||..++...- ..| ....+.||. |+.. +.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i------~~g-----~~~~i~CP~~~C~~~~~~~ 65 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLI------KEG-----LETAISCPDAACPKQGHLQ 65 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHH------HHC-----SCCCEECSCTTCSSCCEEC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHh------hcC-----CcccccCccccCCCCCccC
Confidence 478999999999998664 7999999999999987531 001 112468999 9998 55
No 136
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.45 E-value=6e-08 Score=79.59 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=42.5
Q ss_pred cCCcccccCCCCCCCeec--CCCCc-chhhhHHhhhccCCccccccccccCc
Q 004418 142 GSLNCSFCMQLPERPVTT--PCGHN-FCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l--~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
++..|.||++.+.+++.+ ||||. ||..|+..|+.. ...||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 456899999999999987 99999 899999999876 6789999998864
No 137
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.44 E-value=3.5e-08 Score=82.78 Aligned_cols=51 Identities=24% Similarity=0.559 Sum_probs=44.1
Q ss_pred CCCCcccccccCCC--CCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 9 CNLDEQCMRCKVKP--RPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 9 ~~~~~~c~~c~~~~--~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
=..+.+|.||+... .+.++|.|+.|...||+.||. || .+|.++|+||.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~-~~--~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG-VP--YIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT-CS--SCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCC-CC--cCCCCCcCCccCcC
Confidence 35678999998864 678889999999999999999 77 38999999999964
No 138
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.44 E-value=2.4e-08 Score=87.29 Aligned_cols=50 Identities=24% Similarity=0.560 Sum_probs=44.1
Q ss_pred CCCcccccccCCC--CCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 10 NLDEQCMRCKVKP--RPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 10 ~~~~~c~~c~~~~--~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
+.+.+|.||+... .+.++|.|+.|...||+.||. ||+ +|.+.|+||.|..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~-p~~--vP~g~W~C~~C~~ 74 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG-VPY--IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHT-CSS--CCSSCCCCHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCC-CCc--cCCCceECccccC
Confidence 5688999999854 667889999999999999999 774 8999999999975
No 139
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.43 E-value=1e-07 Score=104.27 Aligned_cols=51 Identities=27% Similarity=0.483 Sum_probs=43.5
Q ss_pred hhhhccccccccccccCceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 511 KLLKEFSCLICRQVMNLPITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 511 ~L~e~l~CpIC~~~~~~Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.+.....|+||++.+.+|+.+||||.||..|+..|+... ...||.||..+.
T Consensus 328 ~~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~------------------~~~CP~CR~~i~ 378 (389)
T 2y1n_A 328 MGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE------------------GQGCPFCRCEIK 378 (389)
T ss_dssp TTTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT------------------CSBCTTTCCBCC
T ss_pred hcCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC------------------CCCCCCCCCccC
Confidence 344568999999999999999999999999999988621 237999999887
No 140
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.41 E-value=1.5e-07 Score=86.00 Aligned_cols=52 Identities=25% Similarity=0.732 Sum_probs=44.8
Q ss_pred CCCCcccccccCC-CCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 9 CNLDEQCMRCKVK-PRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 9 ~~~~~~c~~c~~~-~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
|..=-+|.+|+.. ..+..+|.|+.|...||+.||. |||+.+|.++|+||.|.
T Consensus 58 C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~-p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 58 CIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCD-PPLTRMPKGMWICQICR 110 (112)
T ss_dssp CTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCS-SCCSSCCSSCCCCTTTS
T ss_pred cccCCccccccCcCCCccceEEcCCCCCeeecccCC-CCCCCCCCCCeECCCCC
Confidence 4433478888875 4557889999999999999999 99999999999999996
No 141
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.2e-07 Score=78.83 Aligned_cols=44 Identities=27% Similarity=0.665 Sum_probs=39.8
Q ss_pred cCCcccccCCCCCCCeecCCCCc-chhhhHHhhhccCCccccccccccCc
Q 004418 142 GSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
+...|.||++.+.+++++||||. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 56789999999999999999999 99999984 4689999999865
No 142
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.39 E-value=1.1e-07 Score=78.01 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=41.8
Q ss_pred hccccccccccccCceec--CCCCh-hhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccc
Q 004418 514 KEFSCLICRQVMNLPITT--PCAHN-FCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISE 580 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~l--pCgHs-FC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~ 580 (754)
++..|+||++.+.+++++ ||||. ||..|+..++... ..||.||..+..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-------------------~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-------------------KPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-------------------CCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-------------------CcCCCcCcchhc
Confidence 567899999999999987 99999 8999999988643 279999999873
No 143
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.38 E-value=9.9e-08 Score=78.01 Aligned_cols=47 Identities=23% Similarity=0.530 Sum_probs=41.8
Q ss_pred CCcccccCCCCCCCeec--CCCCc-chhhhHHhhhccCCccccccccccCc
Q 004418 143 SLNCSFCMQLPERPVTT--PCGHN-FCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l--~CgH~-FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
...|+||++.+.+++++ ||||. ||..|+.+++.. ...||+||..+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 45799999999999887 99998 999999998876 5789999999864
No 144
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.37 E-value=2e-07 Score=84.35 Aligned_cols=47 Identities=19% Similarity=0.483 Sum_probs=41.0
Q ss_pred cCCcccccCCCCCCC------------------eecCCCCcchhhhHHhhhccCCccccccccccC
Q 004418 142 GSLNCSFCMQLPERP------------------VTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~~~~~P------------------v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
++..|+||++.|..+ +.++|+|.||..||.+|+.. ..+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 567899999999866 34699999999999999987 789999999864
No 145
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.6e-07 Score=80.58 Aligned_cols=46 Identities=26% Similarity=0.559 Sum_probs=37.5
Q ss_pred ccccccccccccC--------------ceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNL--------------PITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~--------------Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+..|+||++.|.+ ++.+ +|+|.|+..||..|+.... .||+||..+.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-------------------~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-------------------RCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-------------------BCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-------------------CCCCcCCCcc
Confidence 5668888888866 4555 5999999999999987543 7999999876
No 146
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.35 E-value=1.7e-07 Score=76.66 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=41.3
Q ss_pred hccccccccccccCceec--CCCCh-hhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccc
Q 004418 514 KEFSCLICRQVMNLPITT--PCAHN-FCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISE 580 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~l--pCgHs-FC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~ 580 (754)
....|+||++.+.+++++ ||||. ||..|+..++... ..||.||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-------------------~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-------------------ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-------------------CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-------------------CcCCCcCchhhc
Confidence 467899999999999887 99998 9999999887543 279999999874
No 147
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.34 E-value=3.1e-07 Score=91.58 Aligned_cols=49 Identities=20% Similarity=0.566 Sum_probs=44.0
Q ss_pred CcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGVD 64 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~~ 64 (754)
+..|.+|+... ++|.|++|...||+.||. ||++.+|.++|+||.|...+
T Consensus 2 ~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~-p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPG---DLVMCNQCEFCFHLDCHL-PALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCS---SCCCCTTTCCBCCSTTST-TCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCC---ceeECCCCCchhccccCC-CCcccCCCCCCCCcCccCCC
Confidence 56899998653 699999999999999999 99999999999999998654
No 148
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.33 E-value=5.2e-07 Score=82.14 Aligned_cols=50 Identities=26% Similarity=0.644 Sum_probs=44.6
Q ss_pred CCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 11 LDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
.+-+|.+|+......++|.|++|...||+.||. |++..++.+.|+||+|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~-~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLD-IAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTT-CCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhC-CccccccccCccCCcCC
Confidence 467899999877667889999999999999999 88887888999999995
No 149
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.30 E-value=4.3e-07 Score=90.02 Aligned_cols=50 Identities=26% Similarity=0.682 Sum_probs=44.7
Q ss_pred CCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCCC
Q 004418 11 LDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGVD 64 (754)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~~ 64 (754)
.|..|.||+.. .++|.|++|...||+.||. ||++.+|.++|+||.|....
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~-p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHV-PTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSS-SCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccC-CCCCCCCCCCEECccccCcc
Confidence 46789999854 4599999999999999999 99999999999999999654
No 150
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.29 E-value=2.7e-07 Score=93.22 Aligned_cols=49 Identities=22% Similarity=0.668 Sum_probs=43.8
Q ss_pred CCcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCC
Q 004418 11 LDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
.+.+|.+|+... ++|.|++|...||+.||. ||++.+|.++|+||.|...
T Consensus 6 ~~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~-p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNGG---DLLCCEKCPKVFHLTCHV-PTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCCE---EEEECSSSSCEECTTTSS-SCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC---ceEEcCCCCCccCCccCC-CCCCCCCCCCEEeCceeCc
Confidence 457899998643 599999999999999999 9999999999999999854
No 151
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.29 E-value=1.6e-07 Score=101.81 Aligned_cols=49 Identities=27% Similarity=0.620 Sum_probs=43.2
Q ss_pred HHhhhhccccccccccccCceecCCCCh-hhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccc
Q 004418 509 REKLLKEFSCLICRQVMNLPITTPCAHN-FCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISE 580 (754)
Q Consensus 509 ~~~L~e~l~CpIC~~~~~~Pv~lpCgHs-FC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~ 580 (754)
+..|++++.|+||++.+.+|+++||||. ||..|+..+ ..||.||..+..
T Consensus 289 ~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 289 LRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----------------------RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----------------------SBCTTTCCBCCE
T ss_pred HHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----------------------CcCCCCCCCccC
Confidence 4567789999999999999999999999 999999754 269999999873
No 152
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=2e-07 Score=77.40 Aligned_cols=44 Identities=27% Similarity=0.736 Sum_probs=38.9
Q ss_pred hccccccccccccCceecCCCCh-hhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCccc
Q 004418 514 KEFSCLICRQVMNLPITTPCAHN-FCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISE 580 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCgHs-FC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~ 580 (754)
+...|+||++.+.+++++||||. ||..|+.. ...||.||..|..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----------------------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----------------------FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----------------------CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----------------------CCCCCCCCcchhc
Confidence 47889999999999999999999 99999983 1279999999884
No 153
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.28 E-value=2.4e-07 Score=75.35 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=41.3
Q ss_pred ccccccccccccCceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.|.||||+++|.+||++ +|||+||+.||.+|+.... .||.++..+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~-------------------~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-------------------NDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS-------------------BCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC-------------------CCcCCcCCCC
Confidence 58999999999999999 9999999999999997442 5999999887
No 154
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.25 E-value=2.5e-07 Score=81.51 Aligned_cols=67 Identities=18% Similarity=0.407 Sum_probs=48.4
Q ss_pred cCCcccccCCCCCCCeec---CCCCcchhhhHHhhhcc-------CCccccc--cccc--cCcCccCCCCcchHHHHHHH
Q 004418 142 GSLNCSFCMQLPERPVTT---PCGHNFCLKCFQKWIGQ-------GKRTCAK--CRHI--IPPKMASQPRINSALVTAIR 207 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l---~CgH~FC~~Ci~~~~~~-------~~~~CP~--CR~~--~~~~~~~~~~~n~~L~~lie 207 (754)
+.++|+||++.+..|+++ +|||.||..|+..++.. ....||. |+.. +....+. +....++++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~----~ll~~~~~~ 79 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE----CMVAAEIMQ 79 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH----HHSCHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH----HHCCHHHHH
Confidence 467899999999988765 79999999999998863 1358999 9998 6542211 222245566
Q ss_pred HHHhh
Q 004418 208 MAKLS 212 (754)
Q Consensus 208 ~~k~~ 212 (754)
+|...
T Consensus 80 ky~~~ 84 (94)
T 1wim_A 80 RYKKL 84 (94)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 155
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.17 E-value=4.9e-07 Score=73.50 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=42.5
Q ss_pred CCcccccCCCCCCCeec-CCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 143 SLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.+.|+||++.+.+||.+ +|||+|+..||.+|+.. ..+||+++.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence 47899999999999999 99999999999999986 4679999999875
No 156
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.15 E-value=1.1e-06 Score=79.33 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=38.6
Q ss_pred ccccccccccccCc------------------eecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCC
Q 004418 515 EFSCLICRQVMNLP------------------ITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPT 576 (754)
Q Consensus 515 ~l~CpIC~~~~~~P------------------v~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~ 576 (754)
.-.|+||++.|..+ +.++|+|.|+..||..|+.... .||+||.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-------------------~CP~Cr~ 97 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-------------------VCPLDNR 97 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-------------------BCSSSCS
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-------------------cCcCCCC
Confidence 46799999998865 4479999999999999987543 7999999
Q ss_pred Ccc
Q 004418 577 DIS 579 (754)
Q Consensus 577 ~v~ 579 (754)
.+.
T Consensus 98 ~~~ 100 (106)
T 3dpl_R 98 EWE 100 (106)
T ss_dssp BCC
T ss_pred cce
Confidence 865
No 157
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.15 E-value=7.5e-07 Score=75.38 Aligned_cols=49 Identities=22% Similarity=0.603 Sum_probs=43.3
Q ss_pred CcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
+..|.+|+.....+.+|.|+.|..-||+.||. +|+..++.+.|+||.|.
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~-~~~~~~~~~~w~C~~C~ 66 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVG-IMAAPPEEMQWFCPKCA 66 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHT-CSSCCCSSSCCCCTTTH
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCC-CCccCCCCCCEEChhcc
Confidence 34699999877667899999999999999999 88888888999999996
No 158
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.99 E-value=9e-07 Score=81.36 Aligned_cols=47 Identities=21% Similarity=0.507 Sum_probs=0.9
Q ss_pred cCCcccccCCCCCCC-----------------e-ecCCCCcchhhhHHhhhccCCccccccccccC
Q 004418 142 GSLNCSFCMQLPERP-----------------V-TTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~~~~~P-----------------v-~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
++-.|+||++.|..+ + .++|+|.||..||.+|+.. ...||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 346899999999763 2 2489999999999999988 779999999864
No 159
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=4.7e-06 Score=71.46 Aligned_cols=49 Identities=29% Similarity=0.647 Sum_probs=41.1
Q ss_pred cCCcccccCCCCC--CCeecCCC-----CcchhhhHHhhhccC-CccccccccccCc
Q 004418 142 GSLNCSFCMQLPE--RPVTTPCG-----HNFCLKCFQKWIGQG-KRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~--~Pv~l~Cg-----H~FC~~Ci~~~~~~~-~~~CP~CR~~~~~ 190 (754)
+...|.||++.+. +++.+||. |.|+..||.+|+... ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4568999998774 67888996 999999999999863 3699999999864
No 160
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.83 E-value=1.2e-05 Score=71.52 Aligned_cols=45 Identities=22% Similarity=0.613 Sum_probs=39.9
Q ss_pred ccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 14 QCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
.| +|+....+..+|.|+.|..-||+.|+. ||+..+|. .|+||.|.
T Consensus 30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~-~~~~~~p~-~w~C~~C~ 74 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMG-IDRQHIPD-TYLCERCQ 74 (98)
T ss_dssp CC-TTSCCSCSSCEEEBTTTCBEEETTTTT-CCTTSCCS-SBCCTTTS
T ss_pred Ee-ECCCccCCCcEEEcCCCCCcCcCcCCC-CCccCCCC-CEECCCCc
Confidence 57 798877778899999999999999999 88887775 89999996
No 161
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.82 E-value=5.7e-06 Score=75.45 Aligned_cols=51 Identities=33% Similarity=0.696 Sum_probs=40.0
Q ss_pred CCcccccccCC------CCCCCceecCCCCCcccccCCCC-CCCc-cccCCcccCCCCC
Q 004418 11 LDEQCMRCKVK------PRPEETITCSTCVTPWHVACLTK-PPET-LASSLSWLCPDCS 61 (754)
Q Consensus 11 ~~~~c~~c~~~------~~~~~~l~c~~c~~~~h~~cl~~-~p~~-~~~~~~w~cp~cs 61 (754)
...+|.+|... ...+++|.|++|...||+.||.. |+++ .++.+.|+||+|.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 35678899653 34578999999999999999973 3332 4678899999995
No 162
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.71 E-value=4.7e-06 Score=76.56 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=0.0
Q ss_pred cccccccccccCc-----------------e-ecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCC
Q 004418 516 FSCLICRQVMNLP-----------------I-TTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTD 577 (754)
Q Consensus 516 l~CpIC~~~~~~P-----------------v-~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~ 577 (754)
-.|+||++.|.++ + .++|+|.|+..||..|+.... .||+||..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-------------------~CP~Cr~~ 109 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-------------------VCPLDNRE 109 (117)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-------------------cCCCCCCe
Confidence 3688888888763 2 258999999999999987543 79999997
Q ss_pred cc
Q 004418 578 IS 579 (754)
Q Consensus 578 v~ 579 (754)
+.
T Consensus 110 ~~ 111 (117)
T 4a0k_B 110 WE 111 (117)
T ss_dssp --
T ss_pred ee
Confidence 65
No 163
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.69 E-value=6.4e-05 Score=65.82 Aligned_cols=48 Identities=29% Similarity=0.567 Sum_probs=38.5
Q ss_pred CCcccccccCCCCCCCceecCCCCC---cccccCCCCCCCccccCCcccCCCCCCC
Q 004418 11 LDEQCMRCKVKPRPEETITCSTCVT---PWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~---~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
..-.| +|+.... .+++.|+.|++ -||+.|+. |+.+|.+.|+||.|...
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg---l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT---CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC---cCcCCCCCEECcCccCc
Confidence 34568 9988654 57999999664 47999999 67788899999999754
No 164
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=1.6e-05 Score=68.06 Aligned_cols=49 Identities=24% Similarity=0.528 Sum_probs=40.9
Q ss_pred hcccccccccccc--CceecCCC-----ChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMN--LPITTPCA-----HNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~--~Pv~lpCg-----HsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
++..|.||++.+. +++++||. |.|...||.+|+.... ...||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-----------------~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD-----------------TRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC-----------------CSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC-----------------CCCCCCCCCeee
Confidence 4678999998774 58889996 9999999999997542 348999999886
No 165
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.62 E-value=9.4e-06 Score=65.69 Aligned_cols=46 Identities=30% Similarity=0.626 Sum_probs=37.3
Q ss_pred CcccccccCCCCCCCceecCCCCC---cccccCCCCCCCccccCCcccCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCVT---PWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~---~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
.-.| +|+.... .++|.|+.|+. -||+.|+. |+.+|.+.|+||.|..
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg---l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC---CCcCCCCCEECcCccC
Confidence 4456 8988654 57999999664 48999999 7788899999999963
No 166
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.59 E-value=5.4e-05 Score=63.34 Aligned_cols=47 Identities=32% Similarity=0.718 Sum_probs=38.2
Q ss_pred CcccccccCCCCCCCceecCC--CC-CcccccCCCCCCCccccCCcccCCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCST--CV-TPWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~--c~-~~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
+-.| +|+.... .++|.|+. |. .-||+.|+. |+.+|.+.|+||.|...
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg---l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT---CSSCCSSCCCCTTTSSC
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC---cCcCCCCCEECCCCCcc
Confidence 4578 7988654 57999999 54 468999999 77888999999999753
No 167
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=97.49 E-value=4e-05 Score=69.13 Aligned_cols=46 Identities=26% Similarity=0.650 Sum_probs=40.3
Q ss_pred CCCcccccccCCCCCCCceecC--CCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 10 NLDEQCMRCKVKPRPEETITCS--TCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~--~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
+.+..|.+|+. ..++|.|+ .|...||+.||. |+.+|.+.|+||.|.
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~---L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN---LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT---CSSCCSSCCCCGGGB
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc---CCcCCCCCEECCCCC
Confidence 35778999984 34799999 899999999998 888999999999885
No 168
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.47 E-value=5e-05 Score=66.35 Aligned_cols=47 Identities=19% Similarity=0.523 Sum_probs=37.9
Q ss_pred CCCcccccccCCCCCCCceecCCCCC---cccccCCCCCCCccccCCcccCCC-CC
Q 004418 10 NLDEQCMRCKVKPRPEETITCSTCVT---PWHVACLTKPPETLASSLSWLCPD-CS 61 (754)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~---~~h~~cl~~~p~~~~~~~~w~cp~-cs 61 (754)
+..-.| +|+.... .+++.|+.|++ -||+.|+. |+.+|.+.|+||. |.
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg---l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG---LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS---CSSCTTSCCCSSHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC---CCcCCCCCccCChhhc
Confidence 345578 8987554 47999999884 47999999 6778889999999 85
No 169
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.34 E-value=3.1e-05 Score=63.06 Aligned_cols=46 Identities=28% Similarity=0.691 Sum_probs=37.1
Q ss_pred CcccccccCCCCCCCceecCCCC---CcccccCCCCCCCccccCCcccCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCV---TPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~---~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
+-.| +|+.... .+++.|+.|+ .-||+.|+. |+.+|.+.|+||.|..
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg---l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS---LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC---cCcCCCCCEECcCccc
Confidence 4567 8988543 4799999977 457999999 6677889999999964
No 170
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=0.00019 Score=60.46 Aligned_cols=49 Identities=22% Similarity=0.580 Sum_probs=39.8
Q ss_pred cCCcccccCCCCCCCee-cCCCCcchhhhHHhhhccC-CccccccccccCc
Q 004418 142 GSLNCSFCMQLPERPVT-TPCGHNFCLKCFQKWIGQG-KRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci~~~~~~~-~~~CP~CR~~~~~ 190 (754)
....|.||.+.+..-.. ..|+|.|...||.+|++.. ...||+||..+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45689999999874333 3899999999999999863 3799999998764
No 171
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.23 E-value=0.00014 Score=64.05 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=38.2
Q ss_pred cccccCCCCCC-CeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 145 NCSFCMQLPER-PVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 145 ~C~IC~~~~~~-Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
.|++|.-.+.. ..++||.|.||..|+..|..++...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 58888766553 45679999999999999988778899999998864
No 172
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.15 E-value=6.9e-05 Score=60.39 Aligned_cols=46 Identities=28% Similarity=0.616 Sum_probs=36.8
Q ss_pred CcccccccCCCCCCCceecCCCC---CcccccCCCCCCCccccCCcccCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCV---TPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~---~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
+-.| +|+.... .+++.|+.|+ --||+.|+. |+.+|.+.|+||.|..
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg---l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD---LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC---cccCCCCCEECcCccC
Confidence 4457 8988543 5799999954 367999999 7788889999999963
No 173
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.91 E-value=0.00093 Score=59.10 Aligned_cols=82 Identities=13% Similarity=0.183 Sum_probs=54.9
Q ss_pred cCCcccccCCC-CCCCee--cCCCCcchhhhHHh-hhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhcccCC
Q 004418 142 GSLNCSFCMQL-PERPVT--TPCGHNFCLKCFQK-WIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKSNLA 217 (754)
Q Consensus 142 ~~l~C~IC~~~-~~~Pv~--l~CgH~FC~~Ci~~-~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~~~~ 217 (754)
+++.|+||.+. +..|+. +.|+|+||..|+.. +...... . +..+.. .+.. . ..+...+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~--~--~h~l~~----~~~~-~----------~~~~~~C 62 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPF--T--GHRLIE----PIPD-S----------HIRGLMC 62 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSS--T--TCCBSS----CCCS-C----------CSSCCCC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCcc--C--CCeeec----cccc-c----------CccCCcC
Confidence 56899999965 778888 89999999999998 4322111 0 111111 1110 0 0122356
Q ss_pred CCc-ccccccccCCCCCCcccchhhh
Q 004418 218 AVP-TKVYHFMRNQDRPDKAFTTERA 242 (754)
Q Consensus 218 ~~~-~k~~~~~~~~drp~~c~~ceRA 242 (754)
..| .+.+.+||.+++..+|..|..+
T Consensus 63 ~~H~~e~l~~fC~~~~~~iC~~C~~~ 88 (101)
T 2jun_A 63 LEHEDEKVNMYCVTDDQLICALCKLV 88 (101)
T ss_dssp SSCSSSCCCEEETTTTEEECHHHHHH
T ss_pred cCcCCCcceEECCCCCCccchhcCCC
Confidence 778 5889999999999999999754
No 174
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.88 E-value=0.00022 Score=60.59 Aligned_cols=50 Identities=30% Similarity=0.676 Sum_probs=43.0
Q ss_pred CCcccccccCCCCCCCceecCCCCCcccccCCCCCC------------CccccCCcccCCCCCC
Q 004418 11 LDEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPP------------ETLASSLSWLCPDCSG 62 (754)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p------------~~~~~~~~w~cp~cs~ 62 (754)
.|..|-||+.-. .++++.|..|.--||..||. ++ +.+-...-|.||+|..
T Consensus 14 ~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~-r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLR-RMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHH-HHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCcccccc-ccceeccccccccccHhhcc-cccccccHHHHHHHHccCCCCCccccccch
Confidence 688999998755 77899999999999999999 65 6666778999999964
No 175
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.84 E-value=0.00063 Score=60.00 Aligned_cols=45 Identities=24% Similarity=0.546 Sum_probs=36.1
Q ss_pred ccccccccccC-ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 517 SCLICRQVMNL-PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 517 ~CpIC~~~~~~-Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.|++|.-.+.. -.++||.|.||..|+..+.... ...||.|+..|.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~------------------~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG------------------DKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT------------------CCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc------------------CCCCcCcCCeee
Confidence 48888877765 4678999999999999886543 237999999887
No 176
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=96.80 E-value=0.0003 Score=64.16 Aligned_cols=48 Identities=29% Similarity=0.688 Sum_probs=38.4
Q ss_pred cccccccCCC-------CCCCceecCCCCCcccccCCCCCCC---ccccCCcccCCCCC
Q 004418 13 EQCMRCKVKP-------RPEETITCSTCVTPWHVACLTKPPE---TLASSLSWLCPDCS 61 (754)
Q Consensus 13 ~~c~~c~~~~-------~~~~~l~c~~c~~~~h~~cl~~~p~---~~~~~~~w~cp~cs 61 (754)
.+|.+|.... ..+++|.|..|...||..||. +++ ..++.+.|+||.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~-~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQ-FTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTT-CCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCC-ChhhhhhccCCCccCccccC
Confidence 4688886532 357899999999999999999 543 25788899999994
No 177
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.78 E-value=0.00071 Score=54.58 Aligned_cols=49 Identities=18% Similarity=0.471 Sum_probs=39.6
Q ss_pred cCCcccccCCCCCCCeecCCC--C---cchhhhHHhhhcc-CCccccccccccCc
Q 004418 142 GSLNCSFCMQLPERPVTTPCG--H---NFCLKCFQKWIGQ-GKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l~Cg--H---~FC~~Ci~~~~~~-~~~~CP~CR~~~~~ 190 (754)
+...|.||++....+..+||. | .|...||.+|+.. +...||+|+..|..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 356899999877777778865 4 7999999999874 46799999998753
No 178
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.76 E-value=0.0014 Score=55.15 Aligned_cols=48 Identities=19% Similarity=0.455 Sum_probs=38.9
Q ss_pred ccccccccccccCceec-CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLPITT-PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~l-pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.-.|.||++++..-+.- .|+|.|=..||.+||.... ...||.||..+.
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~-----------------~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-----------------EPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS-----------------SCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC-----------------CCCCCCCcCcCC
Confidence 46799999999854333 8999999999999997552 247999999876
No 179
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.75 E-value=0.00032 Score=58.47 Aligned_cols=45 Identities=27% Similarity=0.627 Sum_probs=35.9
Q ss_pred CcccccccCCCCCCCceecCCCCC---cccccCCCCCCCccccCCcccCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCVT---PWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~---~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
.-.| +|+.... .+++.|+.|+. -||+.|+. |+.+|.+.|+||.|.
T Consensus 6 ~~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvg---l~~~p~~~w~Cp~C~ 53 (70)
T 1x4i_A 6 SGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVG---LTEAPKGKWYCPQCT 53 (70)
T ss_dssp CCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHT---CSSCCSSCCCCHHHH
T ss_pred CeEE-EcCCCCC-CCEeEeCCCCCCccCCcccccc---cCcCCCCCEECCCCC
Confidence 3456 4887644 48999999974 47999999 566788999999997
No 180
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.68 E-value=0.00095 Score=54.34 Aligned_cols=53 Identities=26% Similarity=0.503 Sum_probs=39.7
Q ss_pred CCcccccccCCCC-CCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCC
Q 004418 11 LDEQCMRCKVKPR-PEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 11 ~~~~c~~c~~~~~-~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
.+-.|.+|+.... ...++.|+.|..=||+.|+...+........|+||.|...
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3557889988653 5678999999988899999954433222479999999854
No 181
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=96.59 E-value=0.00044 Score=65.38 Aligned_cols=46 Identities=26% Similarity=0.597 Sum_probs=39.1
Q ss_pred CcccccccCCCCCCCceecCCCCCcccccCCCCCCCcc-------ccCCcccCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETL-------ASSLSWLCPDCS 61 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~-------~~~~~w~cp~cs 61 (754)
+-.|-+|+... ++|-|++|-..||+.||. ||+.. .|.+.|.||-|.
T Consensus 63 ~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~-p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 63 DEQCRWCAEGG---NLICCDFCHNAFCKKCIL-RNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp BCSCSSSCCCS---SEEECSSSCCEEEHHHHH-HHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCeecccCCCC---cEEeCCCCCCeeeHhhcC-CCCChhhhhhcccCCCCCEeeccc
Confidence 45688887644 799999999999999999 88862 588999999997
No 182
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.55 E-value=0.0006 Score=72.86 Aligned_cols=50 Identities=18% Similarity=0.551 Sum_probs=39.5
Q ss_pred cCCcccccCCCCCC----Cee----cCCCCcchhhhHHhhhccC----------CccccccccccCcC
Q 004418 142 GSLNCSFCMQLPER----PVT----TPCGHNFCLKCFQKWIGQG----------KRTCAKCRHIIPPK 191 (754)
Q Consensus 142 ~~l~C~IC~~~~~~----Pv~----l~CgH~FC~~Ci~~~~~~~----------~~~CP~CR~~~~~~ 191 (754)
....|+||+..+.. |.. ..|+|.|+..|+.+|++.. ...||.||+++...
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 46689999998875 322 3799999999999999741 14799999998754
No 183
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.11 E-value=0.0019 Score=53.40 Aligned_cols=47 Identities=21% Similarity=0.486 Sum_probs=36.8
Q ss_pred cccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 13 EQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
-.| +|+.......++.|+.|..=+|+.|+.... ..++ ..|+||.|..
T Consensus 20 ~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~-~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 20 VTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRK-SNVP-EVFVCQKCRD 66 (68)
T ss_dssp CCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCT-TSCC-SSCCCHHHHT
T ss_pred eEe-ECCCcCCCCCEEECCCCCccccccccCcCc-ccCC-CcEECCCCCC
Confidence 346 998866666799999999888999999433 3344 6999999964
No 184
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.96 E-value=0.0032 Score=50.74 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=39.0
Q ss_pred hccccccccccccCceecCCCC-----hhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITTPCAH-----NFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCgH-----sFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+.-.|.||++-..+|+++||.+ .|=..||.+|+..+. ...||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-----------------~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR-----------------NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT-----------------CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC-----------------CCccCCCCCeee
Confidence 4568999998877888889663 788899999997432 348999998765
No 185
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.75 E-value=0.0023 Score=53.37 Aligned_cols=49 Identities=22% Similarity=0.550 Sum_probs=36.7
Q ss_pred cccccccCCCCC-CCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCC
Q 004418 13 EQCMRCKVKPRP-EETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 13 ~~c~~c~~~~~~-~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
-.| +|+....+ ..++.|+.|..=||+.|+....... ....|+||.|...
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~-~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADA-LPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSC-CCSCCCCHHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCcccc-CCCcEECCCccCC
Confidence 358 69886544 4689999998888999999443333 3479999999743
No 186
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=95.67 E-value=0.0013 Score=53.85 Aligned_cols=51 Identities=22% Similarity=0.507 Sum_probs=38.0
Q ss_pred CCcccccccCC-CCCCCceecC-CCCCcccccCCCCCCCc-----cccCCcccCCCCC
Q 004418 11 LDEQCMRCKVK-PRPEETITCS-TCVTPWHVACLTKPPET-----LASSLSWLCPDCS 61 (754)
Q Consensus 11 ~~~~c~~c~~~-~~~~~~l~c~-~c~~~~h~~cl~~~p~~-----~~~~~~w~cp~cs 61 (754)
..-.|.+|+.. .++..++.|+ .|..=||..|....+.. .-|.+.|+||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 45679999985 4667889999 99999999999932211 1256799999985
No 187
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.45 E-value=0.0047 Score=54.50 Aligned_cols=34 Identities=21% Similarity=0.663 Sum_probs=28.8
Q ss_pred hcccccccccc-ccCcee--cCCCChhhHHhHHHHHc
Q 004418 514 KEFSCLICRQV-MNLPIT--TPCAHNFCKSCLEGAFA 547 (754)
Q Consensus 514 e~l~CpIC~~~-~~~Pv~--lpCgHsFC~~Cl~~~~~ 547 (754)
+++.|+||.+. +..|+. +.|+|+||..|+..+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 47899999964 778888 89999999999997443
No 188
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.45 E-value=0.0031 Score=67.50 Aligned_cols=56 Identities=29% Similarity=0.522 Sum_probs=39.0
Q ss_pred cccccccccccC----cee----cCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 516 FSCLICRQVMNL----PIT----TPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 516 l~CpIC~~~~~~----Pv~----lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
..|+||+..+.+ |.. ..|+|.|-..||.+|+.... ++|. .-......||.||.+++
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~-------~sRq-SFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLM-------DGKT-FLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHH-------SSSC-TTTCCEEECTTTCCEEE
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCC-------Cccc-cccccCCCCCCCCCcCC
Confidence 469999999886 422 37999999999999997532 0000 00112347999999987
No 189
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.23 E-value=0.011 Score=50.08 Aligned_cols=52 Identities=29% Similarity=0.610 Sum_probs=38.0
Q ss_pred ccccccCCCC-CCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCCCCC
Q 004418 14 QCMRCKVKPR-PEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGVDGP 66 (754)
Q Consensus 14 ~c~~c~~~~~-~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~~~~ 66 (754)
.| +|+.... ...++.|+.|..=||..|+...+........|+||.|.....+
T Consensus 14 ~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred EE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 45 8988653 6778999999977799999943322222469999999875543
No 190
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.19 E-value=0.035 Score=66.81 Aligned_cols=73 Identities=15% Similarity=0.057 Sum_probs=65.1
Q ss_pred HhcccCCcccccCCCCCCCeecCCC-CcchhhhHHhhhccCCccccccccccCcCccCCCCcchHHHHHHHHHHhhcc
Q 004418 138 DLLDGSLNCSFCMQLPERPVTTPCG-HNFCLKCFQKWIGQGKRTCAKCRHIIPPKMASQPRINSALVTAIRMAKLSKS 214 (754)
Q Consensus 138 ~~l~~~l~C~IC~~~~~~Pv~l~Cg-H~FC~~Ci~~~~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie~~k~~~~ 214 (754)
..+.+++.|||-++++.+||+++-| ++|=..+|.+|+.. ..+||.-|.++.. ..+.+|..|+.+|+.+...+.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~---~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL---EDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG---GGCEECHHHHHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc---ccccccHHHHHHHHHHHHHHH
Confidence 4556899999999999999999998 69999999999987 6799999999976 578999999999999987765
No 191
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=95.01 E-value=0.0055 Score=55.00 Aligned_cols=53 Identities=21% Similarity=0.530 Sum_probs=39.2
Q ss_pred CcccccccCC-CCCCCceecC-CCCCcccccCCCCCCCc-----cccCCcccCCCCCCCC
Q 004418 12 DEQCMRCKVK-PRPEETITCS-TCVTPWHVACLTKPPET-----LASSLSWLCPDCSGVD 64 (754)
Q Consensus 12 ~~~c~~c~~~-~~~~~~l~c~-~c~~~~h~~cl~~~p~~-----~~~~~~w~cp~cs~~~ 64 (754)
.-.|.+|+.. .++.+++.|+ .|..-||..|+.-.+.. ..+...|+||.|....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 3468899885 3556789998 99999999999932211 1355899999998543
No 192
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.90 E-value=0.0069 Score=51.32 Aligned_cols=52 Identities=23% Similarity=0.535 Sum_probs=39.1
Q ss_pred CcccccccCCCCCCCceecC--CCCCcccccCCCCCCCcc----ccCCcccCCCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCS--TCVTPWHVACLTKPPETL----ASSLSWLCPDCSGVD 64 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~--~c~~~~h~~cl~~~p~~~----~~~~~w~cp~cs~~~ 64 (754)
.-.| +|+.......++-|+ .|..=+|+.|+.-+.... .....|+||.|....
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4568 799986777899999 999988999998333221 123589999998544
No 193
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=94.69 E-value=0.061 Score=64.76 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=62.9
Q ss_pred HhhhhccccccccccccCceecCCC-ChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCccc
Q 004418 510 EKLLKEFSCLICRQVMNLPITTPCA-HNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVN 588 (754)
Q Consensus 510 ~~L~e~l~CpIC~~~~~~Pv~lpCg-HsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N 588 (754)
..+.++|.|||=+++|.+||++|-| ++|=+.+|.+|+.... +||.=|.++. ...+.+|
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~-------------------tdP~Tr~~L~--~~~liPN 944 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS-------------------TDPFNRMPLK--LEDVTPN 944 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-------------------BCTTTCCBCC--GGGCEEC
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCC-------------------CCCCCCCCCC--ccccccc
Confidence 3456789999999999999999998 6999999999997542 7999999988 3678999
Q ss_pred HHHHHHHHHHHcccCC
Q 004418 589 RELMDVIESLKHKTEE 604 (754)
Q Consensus 589 ~~L~~lve~l~~~~~~ 604 (754)
..|...|+.+......
T Consensus 945 ~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 945 EELRQKILCFKKQKKE 960 (968)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998765543
No 194
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=94.56 E-value=0.012 Score=45.84 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=36.5
Q ss_pred CcccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
|.+=-+|+.......++.|+.|..=+|+.|+.... ..++ ..|+||.|..
T Consensus 3 d~~~C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~-~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRK-SNVP-EVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCTTCCEEECTTTCCEEETTTTTCCG-GGCC-SSCCCHHHHT
T ss_pred cCeEEEeCCcCCCCCEEEcCCCCccccccccCCCc-ccCC-CcEECcCCCC
Confidence 34444788766666899999999888999999333 3333 6999999963
No 195
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=94.08 E-value=0.0055 Score=59.68 Aligned_cols=50 Identities=22% Similarity=0.521 Sum_probs=37.6
Q ss_pred CcccccccCCC-CCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 12 DEQCMRCKVKP-RPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 12 ~~~c~~c~~~~-~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
+-.| +|+... ....++-|+.|..-||..|+..++........|+||.|..
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 4568 998854 3566899999998889999984332223367999999963
No 196
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=93.96 E-value=0.021 Score=44.47 Aligned_cols=46 Identities=20% Similarity=0.618 Sum_probs=32.8
Q ss_pred cccccCCCC-CCCceecC-CCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 15 CMRCKVKPR-PEETITCS-TCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 15 c~~c~~~~~-~~~~l~c~-~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
|-+|+.... +..++.|+ .|..=||+.|+.... ..+....|+||.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~-~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSP-EMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCH-HHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCc-cccCCCCEECCCCC
Confidence 667877553 45679999 899666999999332 22224799999995
No 197
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=93.58 E-value=0.023 Score=46.74 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=34.4
Q ss_pred cccccccCCCCCCCceecCC--CCCcccccCCCCCCCcc---ccCCcccCCCCCC
Q 004418 13 EQCMRCKVKPRPEETITCST--CVTPWHVACLTKPPETL---ASSLSWLCPDCSG 62 (754)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~--c~~~~h~~cl~~~p~~~---~~~~~w~cp~cs~ 62 (754)
-.| +|+....+..++.|+. |..=+|+.|+.-+.... .....|+||.|..
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 346 6887666778999995 99999999987322111 1123799999953
No 198
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.06 E-value=0.011 Score=49.62 Aligned_cols=48 Identities=21% Similarity=0.597 Sum_probs=36.4
Q ss_pred ccccccCCCCCCCceecCCCCCcccccCCCCCCCccc-----cCCcccCCCCCCC
Q 004418 14 QCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLA-----SSLSWLCPDCSGV 63 (754)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~-----~~~~w~cp~cs~~ 63 (754)
.| +|+.......++.|+.|..=||+.|+...+ ..+ ....|+||.|...
T Consensus 18 ~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~-~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 18 YC-ICRQPHNNRFMICCDRCEEWFHGDCVGISE-ARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCH-HHHHHHHHHTCCCCCHHHHHH
T ss_pred EE-ECCCccCCCCEEEeCCCCCcEeCeEEccch-hhhhhccCCCCeEECcCCcCc
Confidence 35 898876667899999999888999998322 211 2469999999754
No 199
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=92.30 E-value=0.055 Score=49.02 Aligned_cols=54 Identities=20% Similarity=0.428 Sum_probs=34.2
Q ss_pred CCCCcccccccCCC-CCCCceecCCCCCcccccCCCCCCCccccCC----cccCCCCCCC
Q 004418 9 CNLDEQCMRCKVKP-RPEETITCSTCVTPWHVACLTKPPETLASSL----SWLCPDCSGV 63 (754)
Q Consensus 9 ~~~~~~c~~c~~~~-~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~----~w~cp~cs~~ 63 (754)
|+.-..|..|.... .+..+|.|+.|.--||..|+. ++...+... .|+||.|...
T Consensus 56 c~~c~~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~-~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 56 CSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQ-MDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp CTTTCCBCCHHHHCCGGGSCEEETTTCCEECGGGCC-SCCCCEECSSSSSEEECTTTC--
T ss_pred ccccCcccccccccccCcceEEeeecCCeEECCCCC-CCccccccccCCCCeECCCCcCC
Confidence 33333344443322 234468899999999999999 655543333 4999999753
No 200
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=92.18 E-value=0.026 Score=47.32 Aligned_cols=52 Identities=19% Similarity=0.423 Sum_probs=37.1
Q ss_pred CcccccccCCC-CCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCC
Q 004418 12 DEQCMRCKVKP-RPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 12 ~~~c~~c~~~~-~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
.++-=+|+... ++..++.|+.|..=||..|+............|+||.|...
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34445787743 45678999999988899999944332222358999999743
No 201
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.47 E-value=0.06 Score=52.98 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=35.9
Q ss_pred ccccccCCCCCC----CceecCCCCCcccccCCCCCCCcc------cc-CCcccCCCCCCC
Q 004418 14 QCMRCKVKPRPE----ETITCSTCVTPWHVACLTKPPETL------AS-SLSWLCPDCSGV 63 (754)
Q Consensus 14 ~c~~c~~~~~~~----~~l~c~~c~~~~h~~cl~~~p~~~------~~-~~~w~cp~cs~~ 63 (754)
.|.+|+..-.++ .++-|+.|..=+|..|..... .. .| ...|+||.|...
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~-~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSD-EMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCH-HHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCH-HHHHHhhcCCCCCeeECcCCCCC
Confidence 599998854444 389999999999999998222 11 11 238999999853
No 202
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=91.39 E-value=0.19 Score=51.54 Aligned_cols=48 Identities=23% Similarity=0.586 Sum_probs=39.2
Q ss_pred CCcccccCCCCCCCeec-CCCCcchhhhHHhhhccC-CccccccccccCc
Q 004418 143 SLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGQG-KRTCAKCRHIIPP 190 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l-~CgH~FC~~Ci~~~~~~~-~~~CP~CR~~~~~ 190 (754)
...|.||.++...-+.- .|+|.|...|+..|++.. ...||.|+...+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 57799999988854433 499999999999998763 4699999998764
No 203
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=91.15 E-value=0.03 Score=51.99 Aligned_cols=47 Identities=26% Similarity=0.600 Sum_probs=37.8
Q ss_pred CcccccccCCCCCCCceecCCCCCcccccCCCCCCC-----ccc--cCCcccCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPE-----TLA--SSLSWLCPDCSG 62 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~-----~~~--~~~~w~cp~cs~ 62 (754)
+..|-+|... -++|-|++|-.-||..||. |++ ..+ +.+.|.|+-|..
T Consensus 57 ~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~-~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEG---GNLICCDFCHNAFCKKCIL-RNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCC---SEEEECSSSSCEEEHHHHH-HHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCC---CeeEecCCCchhhhHHHhC-CCcchhHHHHhccCCCCeEcCCcCC
Confidence 3467888753 5689999999999999999 774 344 788999999963
No 204
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=89.76 E-value=0.29 Score=50.05 Aligned_cols=48 Identities=19% Similarity=0.451 Sum_probs=38.9
Q ss_pred ccccccccccccCceecC-CCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNLPITTP-CAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv~lp-CgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
...|.||.+++..-+.-+ |+|.|=..|+..|+.... ...||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~-----------------~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-----------------EPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS-----------------SCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC-----------------CCCCCCCCCCCC
Confidence 456999999999765544 999999999999987542 347999999776
No 205
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.20 E-value=0.23 Score=43.13 Aligned_cols=48 Identities=25% Similarity=0.631 Sum_probs=38.7
Q ss_pred ccCCcccccCCCCCCCeecCCC-CcchhhhHHhhhccCCccccccccccCcC
Q 004418 141 DGSLNCSFCMQLPERPVTTPCG-HNFCLKCFQKWIGQGKRTCAKCRHIIPPK 191 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~Pv~l~Cg-H~FC~~Ci~~~~~~~~~~CP~CR~~~~~~ 191 (754)
-.-+.|..|.-..+. .+.|. |.+|+.|+...+.. ...||+|..+++.+
T Consensus 26 ~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred cCcccChhhccccCC--eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 356889999877664 44565 89999999988877 77899999999764
No 206
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.66 E-value=0.2 Score=54.28 Aligned_cols=68 Identities=25% Similarity=0.461 Sum_probs=48.9
Q ss_pred hhhccccccccccccCcee-cCCCChhhHH--hHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCccc
Q 004418 512 LLKEFSCLICRQVMNLPIT-TPCAHNFCKS--CLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVN 588 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~-lpCgHsFC~~--Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N 588 (754)
+.-.|.|||=+..|..|+. ..|.|.-|-. =+..... +...+.||+|...+. ..++.+.
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~-----------------~~~~W~CPIC~k~~~--~~dL~ID 306 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQL-----------------QIPTWQCPVCQIDIA--LENLAIS 306 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHH-----------------HSCCCBCTTTCCBCC--GGGEEEB
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhh-----------------cCCceeCCCCCcccC--HHHeeEc
Confidence 3446999999999999975 5899985543 2322221 123679999999887 5678888
Q ss_pred HHHHHHHHHH
Q 004418 589 RELMDVIESL 598 (754)
Q Consensus 589 ~~L~~lve~l 598 (754)
..+..++...
T Consensus 307 ~~~~~IL~~~ 316 (371)
T 3i2d_A 307 EFVDDILQNC 316 (371)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHhc
Confidence 8887776543
No 207
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=86.91 E-value=0.28 Score=55.38 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=31.8
Q ss_pred CCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCCCC
Q 004418 23 RPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGVDG 65 (754)
Q Consensus 23 ~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~~~ 65 (754)
++..++.|+.|..=||..|..-.+........|+||.|.....
T Consensus 54 ~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~g 96 (528)
T 3pur_A 54 NDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTG 96 (528)
T ss_dssp STTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHC
T ss_pred cCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCCC
Confidence 3446689999999999999994443323346999999986433
No 208
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=81.46 E-value=0.19 Score=56.79 Aligned_cols=49 Identities=20% Similarity=0.497 Sum_probs=35.8
Q ss_pred ccccccCCC-CCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCC
Q 004418 14 QCMRCKVKP-RPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 14 ~c~~c~~~~-~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
.| +|+... ++..++.|+.|..=+|..|+............|+||.|...
T Consensus 39 yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 39 YC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp ET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred EE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 45 888754 46778999999988899999843322222368999999853
No 209
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=76.28 E-value=1.1 Score=39.01 Aligned_cols=45 Identities=22% Similarity=0.507 Sum_probs=35.2
Q ss_pred hccccccccccccCceecCCC-ChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNLPITTPCA-HNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpCg-HsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
--+-|-.|-...+. .+.|. |.+|..||...+..+. .||+|...+.
T Consensus 27 G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~Sd-------------------rCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSN-------------------RCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSS-------------------EETTTTEECC
T ss_pred CcccChhhccccCC--eeeecchhhHHHHHHHHHhhcc-------------------CCcccCCcCC
Confidence 35779999877764 44555 9999999998776554 7999999887
No 210
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=75.81 E-value=1.4 Score=37.11 Aligned_cols=36 Identities=31% Similarity=0.736 Sum_probs=30.1
Q ss_pred ccCCcccccCCCCCCCeecCC----CCcchhhhHHhhhcc
Q 004418 141 DGSLNCSFCMQLPERPVTTPC----GHNFCLKCFQKWIGQ 176 (754)
Q Consensus 141 ~~~l~C~IC~~~~~~Pv~l~C----gH~FC~~Ci~~~~~~ 176 (754)
...|.|.+|.+.+++.-...| .|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 357899999999998777666 699999999888763
No 211
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=75.30 E-value=2.2 Score=38.14 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=29.7
Q ss_pred ceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 27 TITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 27 ~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
.+.|..|-+.||..|+. +.|...+...|+| |+.
T Consensus 69 ~~~C~~Cp~sfC~~c~~-g~l~~~~~~~~~c--~~~ 101 (107)
T 4gne_A 69 VSFCEFCPHSFCKDHEK-GALVPSALEGRLC--CSE 101 (107)
T ss_dssp CEECSSSSCEECTTTCT-TSCEECTTTTCEE--CTT
T ss_pred CcCcCCCCcchhhhccC-CcceecCCCCcee--cCC
Confidence 39999999999999998 8999899999998 654
No 212
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=72.31 E-value=2.4 Score=45.90 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=47.9
Q ss_pred hcccCCcccccCCCCCCCeec-CCCCcchhhh--HHhh-hccCCccccccccccCcCccCCCCcchHHHHHH
Q 004418 139 LLDGSLNCSFCMQLPERPVTT-PCGHNFCLKC--FQKW-IGQGKRTCAKCRHIIPPKMASQPRINSALVTAI 206 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~C--i~~~-~~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~li 206 (754)
.+.-.|.||+-...+..|+.- .|.|.-|.+- +... .....+.||+|...+.. .++.+...+..++
T Consensus 245 s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~---~dL~ID~~~~~IL 313 (371)
T 3i2d_A 245 STIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL---ENLAISEFVDDIL 313 (371)
T ss_dssp EEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG---GGEEEBHHHHHHH
T ss_pred eeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH---HHeeEcHHHHHHH
Confidence 344579999999999999874 8999966653 2222 22457899999998875 5678887777665
No 213
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=72.27 E-value=1.9 Score=39.07 Aligned_cols=39 Identities=21% Similarity=0.467 Sum_probs=28.6
Q ss_pred ceecCCCCCcccccCCCCCCC-----cccc-CCcccCCCCCCCCC
Q 004418 27 TITCSTCVTPWHVACLTKPPE-----TLAS-SLSWLCPDCSGVDG 65 (754)
Q Consensus 27 ~l~c~~c~~~~h~~cl~~~p~-----~~~~-~~~w~cp~cs~~~~ 65 (754)
++.|+.|.--+|-.|+...+. ...| .-.|.||.|+..+.
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 578999999999999984431 2223 34799999986543
No 214
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=71.55 E-value=0.37 Score=53.74 Aligned_cols=51 Identities=22% Similarity=0.453 Sum_probs=36.3
Q ss_pred cccccccCCC-CCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCCCC
Q 004418 13 EQCMRCKVKP-RPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSGV 63 (754)
Q Consensus 13 ~~c~~c~~~~-~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~~ 63 (754)
.+.=+|+... ++..++-|+.|..=+|..|+..+.........|+||.|...
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 3444788754 36778999999977799999833322222368999999853
No 215
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=70.95 E-value=3.4 Score=44.57 Aligned_cols=67 Identities=16% Similarity=0.390 Sum_probs=48.7
Q ss_pred hhhccccccccccccCcee-cCCCChhhHH--hHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcccccCCCccc
Q 004418 512 LLKEFSCLICRQVMNLPIT-TPCAHNFCKS--CLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDISEFLQNPQVN 588 (754)
Q Consensus 512 L~e~l~CpIC~~~~~~Pv~-lpCgHsFC~~--Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~~~~~~~~~N 588 (754)
+.=.|.|||=+..+..|+. ..|.|.-|-. =+...... .....||.|...+. ..++.++
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~-----------------~~~W~CPiC~k~~~--~~dL~ID 272 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEK-----------------KPTWICPVCDKKAA--YESLILD 272 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHH-----------------SCCCBCTTTCSBCC--GGGEEEB
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhh-----------------CCCeECCCCCcccC--HHHeEEc
Confidence 3447899999999999975 5899995543 33322221 23679999999887 5788888
Q ss_pred HHHHHHHHH
Q 004418 589 RELMDVIES 597 (754)
Q Consensus 589 ~~L~~lve~ 597 (754)
..+..++..
T Consensus 273 ~~~~~IL~~ 281 (360)
T 4fo9_A 273 GLFMEILND 281 (360)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 888888753
No 216
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=70.25 E-value=1.3 Score=47.11 Aligned_cols=40 Identities=28% Similarity=0.739 Sum_probs=31.0
Q ss_pred CCCcccccccCCC-----C----CCC--ceecCCCCCcccccCCCCCCCccccCCcccCCCCCC
Q 004418 10 NLDEQCMRCKVKP-----R----PEE--TITCSTCVTPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 10 ~~~~~c~~c~~~~-----~----~~~--~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
...|.|.||+..| . .+- -|+|..|.|-||+. + +.||-|..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~--R-----------~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV--R-----------IKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC--T-----------TSCSSSCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec--C-----------cCCcCCCC
Confidence 5679999999876 1 122 39999999999986 2 57999964
No 217
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=67.47 E-value=4 Score=44.01 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=48.7
Q ss_pred hcccCCcccccCCCCCCCee-cCCCCcchhhhH--Hhhh-ccCCccccccccccCcCccCCCCcchHHHHHHH
Q 004418 139 LLDGSLNCSFCMQLPERPVT-TPCGHNFCLKCF--QKWI-GQGKRTCAKCRHIIPPKMASQPRINSALVTAIR 207 (754)
Q Consensus 139 ~l~~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Ci--~~~~-~~~~~~CP~CR~~~~~~~~~~~~~n~~L~~lie 207 (754)
.+.-.|.|||-...+..|+. ..|.|.-|.+-. .... ....+.||+|.+.+.. .++.+...+..++.
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~---~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY---ESLILDGLFMEILN 280 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG---GGEEEBHHHHHHHT
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH---HHeEEcHHHHHHHH
Confidence 34567899999999999987 489999666532 2222 2357899999998875 56888887777653
No 218
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=64.63 E-value=2.4 Score=35.69 Aligned_cols=36 Identities=22% Similarity=0.643 Sum_probs=29.5
Q ss_pred hccccccccccccCceecCC----CChhhHHhHHHHHcCC
Q 004418 514 KEFSCLICRQVMNLPITTPC----AHNFCKSCLEGAFAGK 549 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~lpC----gHsFC~~Cl~~~~~~~ 549 (754)
..|.|.+|.+-+.+-....| .|.||-.|-...+..+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 36899999999999755555 6999999998887654
No 219
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.21 E-value=5.1 Score=34.30 Aligned_cols=35 Identities=29% Similarity=0.572 Sum_probs=28.2
Q ss_pred CCCceecCCCC-CcccccCCCCCCCccccCCcccCCCCCC
Q 004418 24 PEETITCSTCV-TPWHVACLTKPPETLASSLSWLCPDCSG 62 (754)
Q Consensus 24 ~~~~l~c~~c~-~~~h~~cl~~~p~~~~~~~~w~cp~cs~ 62 (754)
.-++|.|..|. ++-|+.|.. +. .....|.|..|++
T Consensus 43 ~W~L~lC~~Cgs~gtH~~Cs~---l~-~~~~~weC~~C~~ 78 (85)
T 1weq_A 43 RWRLILCATCGSHGTHRDCSS---LR-PNSKKWECNECLP 78 (85)
T ss_dssp TTBCEECSSSCCCEECSGGGT---CC-TTCSCCCCTTTSC
T ss_pred CEEEEeCcccCCchhHHHHhC---Cc-CCCCCEECCcCcc
Confidence 35689999996 689999998 32 2456899999985
No 220
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=54.42 E-value=3.7 Score=42.99 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=29.1
Q ss_pred chhhhhccccccccC-CccCCcccCccccccCCCCCCCCCC
Q 004418 446 PELKMATDVTERKES-PAWDFDEEDSRWKWKKPPPLSKKPI 485 (754)
Q Consensus 446 ~~~~~~~d~~~~~~~-p~~~~~~~~~~w~w~~~pp~~~~~~ 485 (754)
.+.++..|||.|+|. ||..+|++|++ .+|+.+++..
T Consensus 27 ~~~~~~~Dis~G~E~~pi~~~N~vD~~----~~p~~f~Y~~ 63 (287)
T 3hna_A 27 VERIVSRDIARGYERIPIPCVNAVDSE----PCPSNYKYVS 63 (287)
T ss_dssp CCEEEESCTTTTCSSSCCCEEESSSSC----CCCCSSEECS
T ss_pred cCCEEhHhhCCCCCCCCEEEEeCCCCC----CCCCCcEEcc
Confidence 345678999999999 99999999986 4566777665
No 221
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=47.51 E-value=16 Score=31.46 Aligned_cols=48 Identities=19% Similarity=0.527 Sum_probs=36.3
Q ss_pred cCCcccccCCCCC-----CCee--cCCCCcchhhhHHhhhccCCccccccccccC
Q 004418 142 GSLNCSFCMQLPE-----RPVT--TPCGHNFCLKCFQKWIGQGKRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~~~~-----~Pv~--l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~ 189 (754)
..-.|.||-+..- ++.. -.|+-..|..|+.--.+.+...||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3468999998643 1211 2688889999998777777889999998885
No 222
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=46.33 E-value=2.9 Score=29.59 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=13.9
Q ss_pred hccccccccccccCcee
Q 004418 514 KEFSCLICRQVMNLPIT 530 (754)
Q Consensus 514 e~l~CpIC~~~~~~Pv~ 530 (754)
+.|.||||+..|..+-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 57999999998888643
No 223
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=46.17 E-value=26 Score=30.07 Aligned_cols=47 Identities=26% Similarity=0.584 Sum_probs=33.1
Q ss_pred ccccccccccccC-----ceec--CCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 515 EFSCLICRQVMNL-----PITT--PCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 515 ~l~CpIC~~~~~~-----Pv~l--pCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
.-.|.||.+-+-. +++. .|+-..|+.|+.--.... ...||.|.+.+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG------------------~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG------------------TQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS------------------CSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc------------------CccccccCCccc
Confidence 4579999986432 3222 688889999998554432 347999999776
No 224
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=39.53 E-value=27 Score=28.14 Aligned_cols=45 Identities=18% Similarity=0.382 Sum_probs=32.2
Q ss_pred cCCcccccCCCCCCCeec--CCCCcchhhhHHhhhcc---CCcccccccccc
Q 004418 142 GSLNCSFCMQLPERPVTT--PCGHNFCLKCFQKWIGQ---GKRTCAKCRHII 188 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Ci~~~~~~---~~~~CP~CR~~~ 188 (754)
..-.|.||.+--. +++ .|...|+..|+...+.. +...|+.|....
T Consensus 11 ~~~~C~vC~~~~~--ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGTD--VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCTT--CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCCe--EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3457999986432 222 78999999999766553 467999997644
No 225
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=39.14 E-value=6.4 Score=35.13 Aligned_cols=34 Identities=18% Similarity=0.477 Sum_probs=26.2
Q ss_pred cccccccCCCCCCCceecCCCCCcccccCCCCCCCccccCCcccCCCCC
Q 004418 13 EQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPETLASSLSWLCPDCS 61 (754)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~~~~~~~~w~cp~cs 61 (754)
++|.+|... .|++|..-+|++|+. +| .|.|..|.
T Consensus 8 ~~C~~C~~~-------~C~~C~~c~~~~~~~-~~-------~~~~~~c~ 41 (117)
T 4bbq_A 8 RKCKACVQG-------ECGVCHYCRDMKKFG-GP-------GRMKQSCV 41 (117)
T ss_dssp SCSHHHHSC-------CCSCSHHHHHSGGGT-SC-------CCSCCCCG
T ss_pred CcCcCcCCc-------CCCCCCCCcCCcccC-CC-------Cccccchh
Confidence 578888764 299999999999998 55 36666664
No 226
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=39.11 E-value=16 Score=34.14 Aligned_cols=44 Identities=23% Similarity=0.598 Sum_probs=31.1
Q ss_pred CCcccccCCCCCCCeecCCCCcchhhhHHhhhc----------cCCcccccccc
Q 004418 143 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG----------QGKRTCAKCRH 186 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Ci~~~~~----------~~~~~CP~CR~ 186 (754)
+..|.+|.+-=.--.--.|-..||..||.+.+. .+.+.||.|+.
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 347999987543111127899999999986542 35789999964
No 227
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.75 E-value=8.5 Score=35.68 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=29.7
Q ss_pred cCCcccccCCCCC---CC--eecCCCCcchhhhHHhhhc---cCCcccccccc
Q 004418 142 GSLNCSFCMQLPE---RP--VTTPCGHNFCLKCFQKWIG---QGKRTCAKCRH 186 (754)
Q Consensus 142 ~~l~C~IC~~~~~---~P--v~l~CgH~FC~~Ci~~~~~---~~~~~CP~CR~ 186 (754)
....|.+|...|. .. +...|.|.+|..|-..... .....|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 5678999998773 12 2347888899888764311 22457777754
No 228
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.64 E-value=8.2 Score=30.69 Aligned_cols=35 Identities=23% Similarity=0.662 Sum_probs=24.9
Q ss_pred cCCcccccCCCCCCC-----eec-C--CCCcchhhhHHhhhcc
Q 004418 142 GSLNCSFCMQLPERP-----VTT-P--CGHNFCLKCFQKWIGQ 176 (754)
Q Consensus 142 ~~l~C~IC~~~~~~P-----v~l-~--CgH~FC~~Ci~~~~~~ 176 (754)
..-.||-|.-.++.. ++- . |++.||+.|+..|...
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 345799998877742 232 3 8899999999887654
No 229
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=38.23 E-value=14 Score=34.93 Aligned_cols=46 Identities=17% Similarity=0.416 Sum_probs=31.6
Q ss_pred cCCcccccCCCCC---CC--eecCCCCcchhhhHHhhhccCCccccccccc
Q 004418 142 GSLNCSFCMQLPE---RP--VTTPCGHNFCLKCFQKWIGQGKRTCAKCRHI 187 (754)
Q Consensus 142 ~~l~C~IC~~~~~---~P--v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~ 187 (754)
.+..|.+|...|. +. +...|.|.+|..|-...-....+.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 4678999998753 22 2348999999999743222345788888653
No 230
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=36.77 E-value=33 Score=32.43 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=36.4
Q ss_pred CCCCchhhHHHHHHHHHHhhH---------HHHHhh---------------hhcccccccccccc---Cc--eecCCCCh
Q 004418 486 GTGKPEDGKKVRRAIRQAQNT---------SVREKL---------------LKEFSCLICRQVMN---LP--ITTPCAHN 536 (754)
Q Consensus 486 ~~~~~e~~~~ir~~~~~~~~~---------~~~~~L---------------~e~l~CpIC~~~~~---~P--v~lpCgHs 536 (754)
..|++++++.|-+....+... .+.+.| ..+-.|.+|...|. ++ +-..|.|.
T Consensus 15 s~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~~~~~k~~~~~~~~~~~~~~C~~C~~~fg~l~~~g~~C~~C~~~ 94 (153)
T 2zet_C 15 STLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLF 94 (153)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGTBCTTTCCBGGGCSSCCEECTTTCCE
T ss_pred ccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcccccCCCccchhhcCccccccCCCCcCCCCCch
Confidence 578889888886655444211 122111 13567999998754 22 23489999
Q ss_pred hhHHhH
Q 004418 537 FCKSCL 542 (754)
Q Consensus 537 FC~~Cl 542 (754)
+|..|-
T Consensus 95 VC~~C~ 100 (153)
T 2zet_C 95 VCKSCS 100 (153)
T ss_dssp ECGGGE
T ss_pred hhcccc
Confidence 999995
No 231
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=34.65 E-value=8.5 Score=35.04 Aligned_cols=46 Identities=22% Similarity=0.474 Sum_probs=30.4
Q ss_pred cCCcccccCCCCCCC----eecCCCCcchhhhHHhhhccCCcccccccccc
Q 004418 142 GSLNCSFCMQLPERP----VTTPCGHNFCLKCFQKWIGQGKRTCAKCRHII 188 (754)
Q Consensus 142 ~~l~C~IC~~~~~~P----v~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~ 188 (754)
....|..|...|.-- .--.||..||..|....... .+.|-.|-..+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHHHH
Confidence 446899999888632 11389999999998765543 67888886544
No 232
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.16 E-value=38 Score=30.76 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=22.8
Q ss_pred CCcccccCCCCCCC---e-ecCCCCcchhhhHHhh
Q 004418 143 SLNCSFCMQLPERP---V-TTPCGHNFCLKCFQKW 173 (754)
Q Consensus 143 ~l~C~IC~~~~~~P---v-~l~CgH~FC~~Ci~~~ 173 (754)
...|.+|...|.-- . --.||+.||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 46799999877622 1 1389999999997653
No 233
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=32.58 E-value=30 Score=31.94 Aligned_cols=58 Identities=19% Similarity=0.477 Sum_probs=35.9
Q ss_pred CCCCchhhHHHHHHHHHHhhH---------HHHHhh---------hhccccccccccccC---c--eecCCCChhhHHhH
Q 004418 486 GTGKPEDGKKVRRAIRQAQNT---------SVREKL---------LKEFSCLICRQVMNL---P--ITTPCAHNFCKSCL 542 (754)
Q Consensus 486 ~~~~~e~~~~ir~~~~~~~~~---------~~~~~L---------~e~l~CpIC~~~~~~---P--v~lpCgHsFC~~Cl 542 (754)
..|++++++.|-..+...... .+.+.| ..+-.|.+|...|.- + +-..|.|.+|..|-
T Consensus 8 s~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~~k~~~~~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 8 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred ccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 467888888886555443221 122222 134559999988731 2 23489999999994
Q ss_pred H
Q 004418 543 E 543 (754)
Q Consensus 543 ~ 543 (754)
.
T Consensus 88 ~ 88 (134)
T 1zbd_B 88 V 88 (134)
T ss_dssp E
T ss_pred C
Confidence 3
No 234
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=28.92 E-value=16 Score=31.24 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=28.4
Q ss_pred CcccccccCCCCCCCceecCCCCCcccccCCCCCCC
Q 004418 12 DEQCMRCKVKPRPEETITCSTCVTPWHVACLTKPPE 47 (754)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~~p~ 47 (754)
...|.+|+... ..-.-.|..|+.-.|+.|...||.
T Consensus 47 ~~~C~~C~~~~-~~~~Y~C~~C~f~lH~~Ca~~p~~ 81 (89)
T 1v5n_A 47 VYTCDKCEEEG-TIWSYHCDECDFDLHAKCALNEDT 81 (89)
T ss_dssp SCCCTTTSCCC-CSCEEECTTTCCCCCHHHHHCSSC
T ss_pred CeEeCCCCCcC-CCcEEEcCCCCCeEcHHhcCCCCc
Confidence 45799999874 455699999999999999985553
No 235
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=28.21 E-value=43 Score=26.57 Aligned_cols=40 Identities=20% Similarity=0.543 Sum_probs=28.5
Q ss_pred CcccccCCCCCCCe---ecCCCCcchhhhHHhhhccCCcccccc
Q 004418 144 LNCSFCMQLPERPV---TTPCGHNFCLKCFQKWIGQGKRTCAKC 184 (754)
Q Consensus 144 l~C~IC~~~~~~Pv---~l~CgH~FC~~Ci~~~~~~~~~~CP~C 184 (754)
..|--|+..|.+.. -..|.+.||..|=. .+......||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCC
Confidence 46999998886544 23899999999943 333335689988
No 236
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=27.72 E-value=33 Score=27.02 Aligned_cols=45 Identities=16% Similarity=0.464 Sum_probs=30.5
Q ss_pred cCCcccccCCCCCCCeec--CCCCcchhhhHHhhhc---cCCcccccccccc
Q 004418 142 GSLNCSFCMQLPERPVTT--PCGHNFCLKCFQKWIG---QGKRTCAKCRHII 188 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Ci~~~~~---~~~~~CP~CR~~~ 188 (754)
.+..|.||.+.- . +++ .|...|...|+..-+. .+...||.|....
T Consensus 8 ~~~~C~vC~~~g-~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDGG-E-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCCS-S-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCCC-C-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456799998632 1 222 6888899999985443 3467899997643
No 237
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=27.56 E-value=14 Score=31.23 Aligned_cols=29 Identities=31% Similarity=0.807 Sum_probs=20.4
Q ss_pred cccccCCCCC-----CCeecC-CCCcchhhhHHhh
Q 004418 145 NCSFCMQLPE-----RPVTTP-CGHNFCLKCFQKW 173 (754)
Q Consensus 145 ~C~IC~~~~~-----~Pv~l~-CgH~FC~~Ci~~~ 173 (754)
-||-|...+. .+|+-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3887776442 234444 9999999998887
No 238
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=27.38 E-value=35 Score=25.59 Aligned_cols=42 Identities=24% Similarity=0.638 Sum_probs=27.6
Q ss_pred cccccCCCCCC-Ceec--CCCCcchhhhHHhhhc---cCCcccccccc
Q 004418 145 NCSFCMQLPER-PVTT--PCGHNFCLKCFQKWIG---QGKRTCAKCRH 186 (754)
Q Consensus 145 ~C~IC~~~~~~-Pv~l--~CgH~FC~~Ci~~~~~---~~~~~CP~CR~ 186 (754)
.|.||...-.. .+++ .|...|...|+..-+. .+...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888764322 2222 7888899999965433 34678999965
No 239
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=27.12 E-value=30 Score=28.26 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=22.1
Q ss_pred CCcccccCCCCCCC---ee-cCCCCcchhhhHHh
Q 004418 143 SLNCSFCMQLPERP---VT-TPCGHNFCLKCFQK 172 (754)
Q Consensus 143 ~l~C~IC~~~~~~P---v~-l~CgH~FC~~Ci~~ 172 (754)
+-.|.+|...|.-- -. -.||..||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 45899999877522 11 37999999999754
No 240
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.97 E-value=32 Score=30.69 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=36.8
Q ss_pred hccccccccccccC---ceecCCCChhhHHhHHHHHcCCcccccccCCCccccCCCCcccCCCCCCCcc
Q 004418 514 KEFSCLICRQVMNL---PITTPCAHNFCKSCLEGAFAGKTFVRERSRGGRTLRSQKNVMQCPSCPTDIS 579 (754)
Q Consensus 514 e~l~CpIC~~~~~~---Pv~lpCgHsFC~~Cl~~~~~~~~~~~~~~~~g~~~~~~~~~~~CP~CR~~v~ 579 (754)
+-|.|..|...|.+ .....=+..||..|..+.+.... .|..|...|.
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~-------------------~C~~C~~~I~ 80 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG-------------------AGGSGGHMGS 80 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCC-------------------SSSCSSCCSC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCC-------------------ccccCCCCcC
Confidence 36999999999963 44555677899999998876432 5999999887
No 241
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=26.51 E-value=24 Score=28.87 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=33.1
Q ss_pred CCcccccCCCCCCCeec---CCCCcchhhhHHhhhcc---CCccccccccccCc
Q 004418 143 SLNCSFCMQLPERPVTT---PCGHNFCLKCFQKWIGQ---GKRTCAKCRHIIPP 190 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv~l---~CgH~FC~~Ci~~~~~~---~~~~CP~CR~~~~~ 190 (754)
...|.||......-.++ .|..-|...|+...... ....||.|+..+..
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 45799998765432233 67777899998754432 46789999876653
No 242
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=26.27 E-value=24 Score=28.05 Aligned_cols=48 Identities=21% Similarity=0.499 Sum_probs=33.2
Q ss_pred cCCcccccCCCCC---CCeec--CCCCcchhhhHHhhh------ccCCccccccccccC
Q 004418 142 GSLNCSFCMQLPE---RPVTT--PCGHNFCLKCFQKWI------GQGKRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~~~~---~Pv~l--~CgH~FC~~Ci~~~~------~~~~~~CP~CR~~~~ 189 (754)
++..|.||..... ..+++ .|...|...|+..-+ ..+...|+.|.....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 4568999997642 23333 788889999987643 235689999976543
No 243
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=25.59 E-value=39 Score=26.61 Aligned_cols=43 Identities=21% Similarity=0.581 Sum_probs=30.9
Q ss_pred cCCcccccCCCCCCCeec--CCCCcchhhhHHhhhc---cCCcccccccc
Q 004418 142 GSLNCSFCMQLPERPVTT--PCGHNFCLKCFQKWIG---QGKRTCAKCRH 186 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv~l--~CgH~FC~~Ci~~~~~---~~~~~CP~CR~ 186 (754)
.+..|.+|...- -+++ .|...|...|+..-+. .+...||.|..
T Consensus 10 ~~~~C~vC~~~g--~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQGG--EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCCS--SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCCC--cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 466899998742 2222 7888899999987443 35679999965
No 244
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=25.40 E-value=20 Score=24.74 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=9.2
Q ss_pred CCcccCCCCCC
Q 004418 52 SLSWLCPDCSG 62 (754)
Q Consensus 52 ~~~w~cp~cs~ 62 (754)
.++|.||.|..
T Consensus 3 ~gDW~C~~C~~ 13 (32)
T 2lk0_A 3 FEDWLCNKCCL 13 (32)
T ss_dssp CSEEECTTTCC
T ss_pred CCCCCcCcCcC
Confidence 47999999975
No 245
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=25.34 E-value=25 Score=24.40 Aligned_cols=12 Identities=42% Similarity=1.099 Sum_probs=10.0
Q ss_pred CCcccCCCCCCC
Q 004418 52 SLSWLCPDCSGV 63 (754)
Q Consensus 52 ~~~w~cp~cs~~ 63 (754)
.++|.||.|...
T Consensus 4 ~gDW~C~~C~~~ 15 (33)
T 2k1p_A 4 ANDWQCKTCSNV 15 (33)
T ss_dssp SSSCBCSSSCCB
T ss_pred CCCcccCCCCCc
Confidence 579999999854
No 246
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.76 E-value=36 Score=28.58 Aligned_cols=30 Identities=27% Similarity=0.560 Sum_probs=21.8
Q ss_pred CCcccccCCCCCCCe----ecCCCCcchhhhHHh
Q 004418 143 SLNCSFCMQLPERPV----TTPCGHNFCLKCFQK 172 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv----~l~CgH~FC~~Ci~~ 172 (754)
...|.+|...|.--. --.||..||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 457999998875221 137999999999654
No 247
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=23.61 E-value=39 Score=24.01 Aligned_cols=27 Identities=4% Similarity=-0.020 Sum_probs=23.0
Q ss_pred CCCCcccccccccCCCCCCcccchhhh
Q 004418 216 LAAVPTKVYHFMRNQDRPDKAFTTERA 242 (754)
Q Consensus 216 ~~~~~~k~~~~~~~~drp~~c~~ceRA 242 (754)
.+..|.+.+.+||.+++..+|+.|..+
T Consensus 5 ~C~~H~e~l~lfC~~d~~~iC~~C~~~ 31 (42)
T 1fre_A 5 KCSEHDERLKLYCKDDGTLSCVICRDS 31 (42)
T ss_dssp CCCSSCSSCCCCCCSSSSSSCCTTSSC
T ss_pred cchhhCCeeeEEeCCCCeEEeccCCCC
Confidence 456788999999999999999999653
No 248
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=23.48 E-value=35 Score=28.65 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=23.3
Q ss_pred cCCcccccCCCCCCC---e-ecCCCCcchhhhHHhh
Q 004418 142 GSLNCSFCMQLPERP---V-TTPCGHNFCLKCFQKW 173 (754)
Q Consensus 142 ~~l~C~IC~~~~~~P---v-~l~CgH~FC~~Ci~~~ 173 (754)
+...|.+|...|.-- - --.||+.||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456899999877532 1 1389999999997653
No 249
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.27 E-value=15 Score=30.73 Aligned_cols=33 Identities=30% Similarity=0.605 Sum_probs=22.1
Q ss_pred CCcccc--cCCCCC-----CCeec------CCCCcchhhhHHhhhc
Q 004418 143 SLNCSF--CMQLPE-----RPVTT------PCGHNFCLKCFQKWIG 175 (754)
Q Consensus 143 ~l~C~I--C~~~~~-----~Pv~l------~CgH~FC~~Ci~~~~~ 175 (754)
-.-||- |...+. ..++= .|++.||..|...|-.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 456776 765543 22333 5899999999988743
No 250
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=23.22 E-value=36 Score=28.47 Aligned_cols=48 Identities=23% Similarity=0.576 Sum_probs=30.5
Q ss_pred cCCcccccCCCCCCCe----ecCCCCcchhhhHHhhhc-----cCCccccccccccC
Q 004418 142 GSLNCSFCMQLPERPV----TTPCGHNFCLKCFQKWIG-----QGKRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Ci~~~~~-----~~~~~CP~CR~~~~ 189 (754)
+...|.+|...|.--. --.||..||..|...... ...+.|-.|-..+.
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 3457999998776221 137999999999865431 12346666654443
No 251
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.27 E-value=1.2e+02 Score=24.80 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=30.8
Q ss_pred CCcccccccCCCCCCCceecCCCCCcccccCCCC----CCCccc------cCCcccCCCCCCC
Q 004418 11 LDEQCMRCKVKPRPEETITCSTCVTPWHVACLTK----PPETLA------SSLSWLCPDCSGV 63 (754)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~----~p~~~~------~~~~w~cp~cs~~ 63 (754)
+..+|..|+..-.+.+.+.- =...||..|+.= -+|... -.+.-+|..|-..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a--~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~ 74 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV--NGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ 74 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB--TTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCC
T ss_pred CCCCCcccCCCcccceEEEE--CCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHh
Confidence 45689999886555555542 356899888751 133321 2456777777643
No 252
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=22.12 E-value=35 Score=29.06 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=22.5
Q ss_pred CCcccccCCCCCCCe----ecCCCCcchhhhHHhh
Q 004418 143 SLNCSFCMQLPERPV----TTPCGHNFCLKCFQKW 173 (754)
Q Consensus 143 ~l~C~IC~~~~~~Pv----~l~CgH~FC~~Ci~~~ 173 (754)
...|.+|...|.--. --.||+.||..|....
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 457999998776321 1389999999997653
No 253
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.86 E-value=30 Score=31.45 Aligned_cols=30 Identities=20% Similarity=0.691 Sum_probs=22.3
Q ss_pred ccccccccccccCce----ecCCCChhhHHhHHH
Q 004418 515 EFSCLICRQVMNLPI----TTPCAHNFCKSCLEG 544 (754)
Q Consensus 515 ~l~CpIC~~~~~~Pv----~lpCgHsFC~~Cl~~ 544 (754)
...|.+|...|.--. --.||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 357999999887321 228999999999753
No 254
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=21.41 E-value=42 Score=28.62 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=23.6
Q ss_pred cCCcccccCCCCCCC----eecCCCCcchhhhHHhhh
Q 004418 142 GSLNCSFCMQLPERP----VTTPCGHNFCLKCFQKWI 174 (754)
Q Consensus 142 ~~l~C~IC~~~~~~P----v~l~CgH~FC~~Ci~~~~ 174 (754)
+...|.+|...|.-- .-..||+.||..|.....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 345799999877521 123899999999987643
No 255
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.09 E-value=26 Score=29.85 Aligned_cols=48 Identities=19% Similarity=0.480 Sum_probs=34.8
Q ss_pred cCCcccccCCCCC---CCeec--CCCCcchhhhHHhhhc-------cCCccccccccccC
Q 004418 142 GSLNCSFCMQLPE---RPVTT--PCGHNFCLKCFQKWIG-------QGKRTCAKCRHIIP 189 (754)
Q Consensus 142 ~~l~C~IC~~~~~---~Pv~l--~CgH~FC~~Ci~~~~~-------~~~~~CP~CR~~~~ 189 (754)
....|.||...-. +.+++ .|...|...|+..-+. .+.+.|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4678999997643 34444 7888999999986543 35689999976553
No 256
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.08 E-value=43 Score=29.76 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=36.3
Q ss_pred cCCcccccCCCCCC---CeecCCCCcchhhhHHhhhccCCccccccccccCc
Q 004418 142 GSLNCSFCMQLPER---PVTTPCGHNFCLKCFQKWIGQGKRTCAKCRHIIPP 190 (754)
Q Consensus 142 ~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Ci~~~~~~~~~~CP~CR~~~~~ 190 (754)
+-|.|..|...|.+ .....=|..||..|..+.+.. ...|..|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCc
Confidence 45889999988862 344566788999999887654 3479999988875
Done!