BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004419
(754 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 693 IKDCKAILKCGVCFDRPK-EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 751
+K +L+CG+CF+ ++I +C H +C+ CI++ L + +CP C + D++
Sbjct: 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKN 74
Query: 752 VKI 754
+I
Sbjct: 75 NRI 77
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 687 QKLQDEI-----------KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHR 735
QKL DE+ K + C C + + V T+CFH C C+QR+ + +
Sbjct: 55 QKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVF 114
Query: 736 KCPGCGTAFGQS 747
CP C GQ+
Sbjct: 115 SCPACRHDLGQN 126
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 679 SETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRK-- 736
S A++ LQ E C VC + KE VI +C H FC CI R E R
Sbjct: 2 SSGSSGALENLQVEAS-------CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFP 54
Query: 737 CPGC 740
CP C
Sbjct: 55 CPVC 58
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 700 LKCGVCFDRPKEVVITK-CFHLFCNPCIQRNLEIRHRKCPGC 740
L C +C D K + TK C H FC CI L +++CP C
Sbjct: 54 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 95
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 700 LKCGVCFDRPKEVVITK-CFHLFCNPCIQRNLEIRHRKCPGC 740
L C +C D K + TK C H FC CI L +++CP C
Sbjct: 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 96
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 701 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
+CG+C + E V C H C PC Q +E CP C
Sbjct: 17 QCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFC 56
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
+ C +C + V T C HLFC CI R L++ CP C
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSC 64
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 37.4 bits (85), Expect = 0.033, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 700 LKCGVCFDRPKEVVITK-CFHLFCNPCIQRNLEIRHRKCPGC 740
L C +C D K + TK C H FC CI L +++CP C
Sbjct: 35 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 76
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 686 IQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR--HRKCPGC 740
++++Q+ I + IL+C +C + KE V TKC H+FC C+ + L + +CP C
Sbjct: 8 VEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 701 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCP 738
+C +C +E V T C H FC CI +++ KCP
Sbjct: 8 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 45
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 701 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
+C +C D ++++ C H FC CI + + RHR CP C
Sbjct: 17 ECCICMDGRADLIL-PCAHSFCQKCIDKWSD-RHRNCPIC 54
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 686 IQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR--HRKCPGCGTA 743
+ KLQ+E+ C +C D ++ V C H FC CI + E KCP C T+
Sbjct: 14 VNKLQEEVI-------CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTS 66
Query: 744 FGQSDVR 750
++ +R
Sbjct: 67 VRKNAIR 73
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 698 AILKCGVCFDRPKEVV-------ITKCFHLFCNPCIQRNLEIRHRKCPGC 740
A++ C +C D E+V T+C H+FC+ C++ +L+ CP C
Sbjct: 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTC 50
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 701 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCP 738
+C +C +E V T C H FC CI +++ KCP
Sbjct: 27 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 64
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 714 ITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747
IT+C H FC CI R+ +R CP C Q+
Sbjct: 31 ITECLHTFCKSCIVRHFYYSNR-CPKCNIVVHQT 63
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 702 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
C +C + K+V I C HL C C+ E + CP C
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 65
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 702 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
C +C + K+V I C HL C C+ E + CP C
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 68
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 702 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
C +C + K+V I C HL C C+ E + CP C
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 67
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 683 EAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPC 725
EA +++LQ+E C VC DR +V C HL C C
Sbjct: 4 EAQLRRLQEE-------RTCKVCLDRAVSIVFVPCGHLVCAEC 39
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 697 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHR-----KCPGC 740
K + C +C + KE V C H FC CI N E CP C
Sbjct: 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVC 65
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 700 LKCGVCFDRPKEVV-------ITKCFHLFCNPCIQRNLEIRHRKCPGC 740
+ C +C D E+V T+C H+FC+ C++ +L+ CP C
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTC 54
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 700 LKCGVCFDRPKEVV-------ITKCFHLFCNPCIQRNLEIRHRKCPGC 740
+ C +C D E+V T+C H+FC+ C++ +L+ CP C
Sbjct: 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTC 119
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 700 LKCGVCFDRPKEVV-------ITKCFHLFCNPCIQRNLEIRHRKCPGC 740
+ C +C D E+V T+C H+FC+ C++ +L+ CP C
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTC 57
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 700 LKCGVCFDRPKEVV-------ITKCFHLFCNPCIQRNLEIRHRKCPGC 740
+ C +C D E+V T+C H+FC+ C++ +L+ CP C
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTC 62
>pdb|3F83|A Chain A, Structure Of Fusion Complex Of The Minor Pilin Cfae And
Major Pilin Cfab Of CfaI PILI FROM ETEC E. COLI
Length = 519
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 216 ENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVR 275
EN+ N + SS +YN++N L +N Y ++ L L + +N
Sbjct: 8 ENMTNTIGPHDRGGSSPIYNILNSYLTAYNGSHHLYDRMS-------FLCLSSQNTLNGA 60
Query: 276 AESADAARNTVDDSESRIERLEVQLQKSIIEK 307
S+DA D E+ I L+ ++S+I++
Sbjct: 61 CPSSDAPGTATIDGETNIT-LQFTEKRSLIKR 91
>pdb|3VAC|A Chain A, Crystal Structure Of The Cfa/i Enterotoxigenic E. Coli
Adhesin Cfae Mutant G168d
pdb|3VAC|B Chain B, Crystal Structure Of The Cfa/i Enterotoxigenic E. Coli
Adhesin Cfae Mutant G168d
Length = 356
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 216 ENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVR 275
EN+ N + SS +YN++N L +N Y ++ L L + +N
Sbjct: 8 ENMTNTIGPHDRGGSSPIYNILNSYLTAYNGSHHLYDRMS-------FLCLSSQNTLNGA 60
Query: 276 AESADAARNTVDDSESRIERLEVQLQKSIIEK 307
S+DA D E+ I L+ ++S+I++
Sbjct: 61 CPSSDAPGTATIDGETNIT-LQFTEKRSLIKR 91
>pdb|2HB0|A Chain A, Crystal Structure Of Cfae, The Adhesive Subunit Of CfaI
Fimbria Of Enterotoxigenic Escherichia Coli
pdb|2HB0|B Chain B, Crystal Structure Of Cfae, The Adhesive Subunit Of CfaI
Fimbria Of Enterotoxigenic Escherichia Coli
Length = 369
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 216 ENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVR 275
EN+ N + SS +YN++N L +N Y ++ L L + +N
Sbjct: 8 ENMTNTIGPHDRGGSSPIYNILNSYLTAYNGSHHLYDRMS-------FLCLSSQNTLNGA 60
Query: 276 AESADAARNTVDDSESRIERLEVQLQKSIIEK 307
S+DA D E+ I L+ ++S+I++
Sbjct: 61 CPSSDAPGTATIDGETNIT-LQFTEKRSLIKR 91
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
L+C +C + E V C H FC+ CI ++ R +CP C
Sbjct: 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPIC 93
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 702 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
C +C + K+V I C HL C C+ E + CP C
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 702 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
C +C + K+V I C HL C C+ E + CP C
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 686 IQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR--HRKCPGC 740
+ KLQ+E+ C +C D ++ V C H FC CI + E KCP C
Sbjct: 14 VNKLQEEVI-------CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 702 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
C +C + K+V I C HL C C+ E + CP C
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 702 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
C +C + K+V I C HL C C+ E + CP C
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 702 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
C +C + K+V I C HL C C+ E + CP C
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 379
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
L+C +C + E V C H FC+ CI ++ R +CP C
Sbjct: 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPIC 93
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
L+C +C + E V C H FC+ CI ++ R +CP C
Sbjct: 65 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPIC 104
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSZ|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
Length = 336
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 466 ACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAY----IAEMETIGQAFE 521
QR+ A + EL L+ + V ++ EAMK+ E+ Y I + +G +
Sbjct: 230 GGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYG 289
Query: 522 DMQTQNQHLLQQVAER 537
+ Q + V +R
Sbjct: 290 SLFDATQTRVMSVGDR 305
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|O Chain O, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|P Chain P, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|R Chain R, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3L6O|Q Chain Q, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|P Chain P, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|R Chain R, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|O Chain O, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3LC2|O Chain O, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|Q Chain Q, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|R Chain R, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|P Chain P, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
Length = 336
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 8/151 (5%)
Query: 395 SLKALIEKLQKD-KLESQIMLDMYGQEG-RDPRDLMEIKESERRAHSQAE-VLKNALDEH 451
SL + + L D L +M ++ G ++ +D K +RRA + AE ++ N+
Sbjct: 155 SLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAA 214
Query: 452 SLELRVKAANEAEA-ACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAY- 509
+V + + QR+ A + EL L+ + V ++ EAMK+ E+ Y
Sbjct: 215 KAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYT 274
Query: 510 ---IAEMETIGQAFEDMQTQNQHLLQQVAER 537
I + +G + + Q + V +R
Sbjct: 275 EDEIVSSDVVGMTYGSLFDATQTRVMSVGDR 305
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3KV3|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
Length = 336
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 466 ACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAY----IAEMETIGQAFE 521
QR+ A + EL L+ + V ++ EAMK+ E+ Y I + +G +
Sbjct: 230 GGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYG 289
Query: 522 DMQTQNQHLLQQVAER 537
+ Q + V +R
Sbjct: 290 SLFDATQTRVMSVGDR 305
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|R Chain R, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|Q Chain Q, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|P Chain P, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
Length = 339
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 469 QRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAY----IAEMETIGQAFEDMQ 524
QR+ A + EL L+ + V ++ EAMK+ E+ Y I + +G + +
Sbjct: 236 QRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLF 295
Query: 525 TQNQHLLQQVAER 537
Q + V +R
Sbjct: 296 DATQTRVMSVGDR 308
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|R Chain R, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|O Chain O, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|Q Chain Q, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution
Length = 336
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 469 QRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAY----IAEMETIGQAFEDMQ 524
QR+ A + EL L+ + V ++ EAMK+ E+ Y I + +G + +
Sbjct: 233 QRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLF 292
Query: 525 TQNQHLLQQVAER 537
Q + V +R
Sbjct: 293 DATQTRVMSVGDR 305
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|R Chain R, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|O Chain O, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|Q Chain Q, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|B Chain B, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|A Chain A, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
Length = 344
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 469 QRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAY----IAEMETIGQAFEDMQ 524
QR+ A + EL L+ + V ++ EAMK+ E+ Y I + +G + +
Sbjct: 241 QRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLF 300
Query: 525 TQNQHLLQQVAER 537
Q + V +R
Sbjct: 301 DATQTRVMSVGDR 313
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|R Chain R, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|O Chain O, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|Q Chain Q, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
Length = 338
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 469 QRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAY----IAEMETIGQAFEDMQ 524
QR+ A + EL L+ + V ++ EAMK+ E+ Y I + +G + +
Sbjct: 235 QRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLF 294
Query: 525 TQNQHLLQQVAER 537
Q + V +R
Sbjct: 295 DATQTRVMSVGDR 307
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|O Chain O, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|P Chain P, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|R Chain R, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3L4S|Q Chain Q, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|P Chain P, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|O Chain O, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|R Chain R, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
Length = 336
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 466 ACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAY----IAEMETIGQAFE 521
QR+ A + EL L+ + V ++ EAMK+ E+ Y I + +G +
Sbjct: 230 GGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYG 289
Query: 522 DMQTQNQHLLQQVAER 537
+ Q + V +R
Sbjct: 290 SLFDATQTRVMSVGDR 305
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740
+C +C + V+TKC H FC C + R P C
Sbjct: 16 FRCFICRQAFQNPVVTKCRHYFCESCALEHF----RATPRC 52
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747
+C C + + T C H C C+ R+ + CP C G+S
Sbjct: 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRS 100
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 702 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCP 738
C +C +E V T C H FC CI +++ KCP
Sbjct: 21 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 57
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 695 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRN-----LEIRHRKCPGCGTAFGQSDV 749
+ K + C +C + + + C H FC C+ N L+ CP C ++ ++
Sbjct: 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74
Query: 750 R 750
R
Sbjct: 75 R 75
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 683 EAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGC 740
E +++LQ+E C VC D+ +V C HL C C RKCP C
Sbjct: 15 EEQLRRLQEE-------RTCKVCMDKEVSIVFIPCGHLVVCKDCAP-----SLRKCPIC 61
>pdb|4DXF|A Chain A, Crystal Structure Of Staphylococcal Superantigen-Like
Protein 4
pdb|4DXF|B Chain B, Crystal Structure Of Staphylococcal Superantigen-Like
Protein 4
pdb|4DXG|A Chain A, Crystal Structure Of Staphylococcal Superantigen-Like
Protein 4 Complexed With Sialyl Lewis X
Length = 204
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 241 LQHWNVEVERYK----ALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERL 296
L+ N +E+Y ++S +D +R KE N S D + + + ++ L
Sbjct: 82 LEENNYNLEKYSVGGITKSNSKKVDHKAGVRITKEDNKGTISHDVSEFKITKEQISLKEL 141
Query: 297 EVQLQKSIIEKNDL 310
+ +L+K +IEKN+L
Sbjct: 142 DFKLRKQLIEKNNL 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,872,748
Number of Sequences: 62578
Number of extensions: 584062
Number of successful extensions: 2231
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 2135
Number of HSP's gapped (non-prelim): 171
length of query: 754
length of database: 14,973,337
effective HSP length: 106
effective length of query: 648
effective length of database: 8,340,069
effective search space: 5404364712
effective search space used: 5404364712
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)