Query 004419
Match_columns 754
No_of_seqs 396 out of 2815
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 23:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978 E3 ubiquitin ligase in 100.0 9.5E-38 2.1E-42 321.5 74.8 685 24-754 3-698 (698)
2 KOG0161 Myosin class II heavy 99.8 1.1E-11 2.3E-16 144.8 86.0 118 23-143 894-1011(1930)
3 KOG0161 Myosin class II heavy 99.8 3.3E-11 7.2E-16 140.7 88.2 47 178-224 985-1031(1930)
4 TIGR00606 rad50 rad50. This fa 99.8 3.8E-13 8.1E-18 160.5 74.8 233 324-559 694-929 (1311)
5 TIGR02169 SMC_prok_A chromosom 99.8 5E-11 1.1E-15 144.8 84.7 25 426-450 675-699 (1164)
6 COG1196 Smc Chromosome segrega 99.8 1.3E-10 2.8E-15 137.3 81.9 120 24-143 173-300 (1163)
7 KOG0933 Structural maintenance 99.8 8.3E-11 1.8E-15 124.7 66.1 244 35-322 226-472 (1174)
8 TIGR02168 SMC_prok_B chromosom 99.7 1.1E-09 2.4E-14 133.6 85.9 32 30-61 172-203 (1179)
9 TIGR02168 SMC_prok_B chromosom 99.7 2E-09 4.3E-14 131.4 87.4 28 27-54 176-203 (1179)
10 TIGR02169 SMC_prok_A chromosom 99.7 4.4E-09 9.6E-14 127.9 88.5 19 432-450 674-692 (1164)
11 TIGR00606 rad50 rad50. This fa 99.7 8.1E-09 1.8E-13 123.9 81.7 104 597-700 972-1091(1311)
12 PRK02224 chromosome segregatio 99.7 1.7E-08 3.6E-13 117.9 77.9 36 185-220 265-300 (880)
13 COG1196 Smc Chromosome segrega 99.7 3.5E-08 7.6E-13 116.9 86.6 40 181-220 298-337 (1163)
14 PF10174 Cast: RIM-binding pro 99.6 1.9E-08 4.2E-13 109.4 70.3 44 180-223 123-166 (775)
15 KOG4674 Uncharacterized conser 99.6 7.3E-08 1.6E-12 111.3 84.0 59 622-680 1242-1300(1822)
16 KOG0996 Structural maintenance 99.6 3.8E-08 8.3E-13 107.0 69.9 27 239-265 486-512 (1293)
17 PRK03918 chromosome segregatio 99.6 1.1E-07 2.4E-12 111.4 78.9 13 737-749 815-827 (880)
18 PF10174 Cast: RIM-binding pro 99.6 5.2E-08 1.1E-12 106.1 70.7 100 102-222 52-151 (775)
19 KOG0320 Predicted E3 ubiquitin 99.6 5.1E-16 1.1E-20 129.9 2.4 55 699-754 131-187 (187)
20 PRK03918 chromosome segregatio 99.6 2.2E-07 4.7E-12 108.9 76.8 20 429-448 456-475 (880)
21 KOG4674 Uncharacterized conser 99.5 2.9E-07 6.2E-12 106.6 79.3 179 73-266 803-985 (1822)
22 KOG0996 Structural maintenance 99.5 2.4E-07 5.3E-12 101.0 79.8 48 12-59 244-296 (1293)
23 PLN03208 E3 ubiquitin-protein 99.4 5.2E-14 1.1E-18 122.6 3.7 56 698-753 17-87 (193)
24 PF15227 zf-C3HC4_4: zinc fing 99.4 1.3E-13 2.8E-18 89.6 3.5 39 702-740 1-42 (42)
25 smart00504 Ubox Modified RING 99.4 3.5E-13 7.7E-18 99.3 3.3 53 700-753 2-54 (63)
26 KOG0287 Postreplication repair 99.4 1.1E-13 2.4E-18 127.5 0.5 55 699-754 23-77 (442)
27 PF01576 Myosin_tail_1: Myosin 99.4 1E-13 2.2E-18 155.7 0.0 99 178-276 208-308 (859)
28 PF01576 Myosin_tail_1: Myosin 99.4 1.1E-13 2.4E-18 155.5 0.0 45 180-224 238-282 (859)
29 KOG0978 E3 ubiquitin ligase in 99.3 2E-06 4.3E-11 91.2 63.2 226 508-745 437-671 (698)
30 KOG0933 Structural maintenance 99.3 2.5E-06 5.5E-11 91.6 71.6 44 181-224 395-438 (1174)
31 KOG0317 Predicted E3 ubiquitin 99.3 6.6E-13 1.4E-17 121.2 3.1 55 698-753 238-292 (293)
32 TIGR00599 rad18 DNA repair pro 99.3 7.9E-13 1.7E-17 131.2 3.2 61 693-754 20-80 (397)
33 PF13923 zf-C3HC4_2: Zinc fing 99.3 1.3E-12 2.8E-17 84.4 2.8 38 702-740 1-39 (39)
34 COG5432 RAD18 RING-finger-cont 99.3 1.3E-12 2.8E-17 117.7 1.9 58 694-752 20-77 (391)
35 KOG0823 Predicted E3 ubiquitin 99.3 2E-12 4.3E-17 114.6 2.8 56 698-753 46-103 (230)
36 PF13920 zf-C3HC4_3: Zinc fing 99.3 3.5E-12 7.6E-17 87.9 2.9 46 700-746 3-49 (50)
37 PF04564 U-box: U-box domain; 99.2 3E-12 6.4E-17 96.1 2.7 55 699-753 4-58 (73)
38 KOG0964 Structural maintenance 99.2 7.8E-06 1.7E-10 87.6 71.2 71 240-313 398-468 (1200)
39 PF14835 zf-RING_6: zf-RING of 99.2 1.7E-12 3.6E-17 89.0 0.8 54 696-752 4-58 (65)
40 KOG2164 Predicted E3 ubiquitin 99.2 2.8E-12 6E-17 127.0 2.3 56 699-754 186-245 (513)
41 PRK04863 mukB cell division pr 99.2 3.4E-05 7.4E-10 91.6 76.0 58 619-676 1063-1120(1486)
42 PF13639 zf-RING_2: Ring finge 99.1 1.1E-11 2.4E-16 82.8 1.3 40 701-741 2-44 (44)
43 PF00097 zf-C3HC4: Zinc finger 99.1 3.3E-11 7.1E-16 79.5 3.1 39 702-740 1-41 (41)
44 PF13445 zf-RING_UBOX: RING-ty 99.1 2.6E-11 5.7E-16 78.3 1.9 36 702-738 1-43 (43)
45 PHA02929 N1R/p28-like protein; 99.1 6.1E-11 1.3E-15 109.2 3.9 48 698-746 173-228 (238)
46 PHA02926 zinc finger-like prot 99.1 6.1E-11 1.3E-15 103.9 3.6 50 698-747 169-232 (242)
47 PF14634 zf-RING_5: zinc-RING 99.1 8.2E-11 1.8E-15 78.2 2.8 41 701-742 1-44 (44)
48 KOG0250 DNA repair protein RAD 99.0 0.0001 2.2E-09 81.3 68.5 34 711-745 986-1021(1074)
49 cd00162 RING RING-finger (Real 99.0 3.4E-10 7.5E-15 77.2 3.2 44 701-744 1-45 (45)
50 KOG4172 Predicted E3 ubiquitin 98.9 1.2E-10 2.5E-15 75.5 -0.1 47 700-746 8-55 (62)
51 COG5574 PEX10 RING-finger-cont 98.9 3E-10 6.6E-15 102.6 2.0 51 699-749 215-266 (271)
52 smart00184 RING Ring finger. E 98.9 6.7E-10 1.5E-14 73.0 2.7 39 702-740 1-39 (39)
53 PF00261 Tropomyosin: Tropomyo 98.9 6.6E-06 1.4E-10 78.6 30.9 198 470-667 30-227 (237)
54 PF12128 DUF3584: Protein of u 98.8 0.00086 1.9E-08 80.3 82.2 39 185-223 352-390 (1201)
55 KOG0976 Rho/Rac1-interacting s 98.8 0.00029 6.4E-09 74.0 65.6 26 718-743 632-657 (1265)
56 KOG0994 Extracellular matrix g 98.8 0.00055 1.2E-08 75.0 53.0 68 77-144 1227-1294(1758)
57 COG1579 Zn-ribbon protein, pos 98.8 5.4E-06 1.2E-10 76.4 24.0 14 731-744 218-231 (239)
58 PF00261 Tropomyosin: Tropomyo 98.7 3.2E-05 6.9E-10 73.9 28.8 76 602-677 141-216 (237)
59 PF05483 SCP-1: Synaptonemal c 98.7 0.0009 2E-08 69.7 78.3 49 3-51 156-204 (786)
60 KOG0824 Predicted E3 ubiquitin 98.6 9.8E-09 2.1E-13 94.5 1.9 49 700-748 8-56 (324)
61 KOG0311 Predicted E3 ubiquitin 98.6 3.9E-09 8.5E-14 99.3 -1.2 53 695-747 39-92 (381)
62 COG5152 Uncharacterized conser 98.6 1.1E-08 2.4E-13 87.1 1.2 47 699-746 196-242 (259)
63 PF05701 WEMBL: Weak chloropla 98.6 0.0022 4.8E-08 69.1 63.8 39 183-221 114-152 (522)
64 COG5243 HRD1 HRD ubiquitin lig 98.5 9.5E-08 2.1E-12 90.2 5.4 45 698-743 286-343 (491)
65 PF12678 zf-rbx1: RING-H2 zinc 98.5 5.7E-08 1.2E-12 72.6 2.9 41 700-741 20-73 (73)
66 PRK04778 septation ring format 98.5 0.0033 7E-08 69.0 56.0 21 241-261 107-127 (569)
67 PF12128 DUF3584: Protein of u 98.5 0.0081 1.8E-07 72.2 77.3 24 180-203 361-384 (1201)
68 PF07888 CALCOCO1: Calcium bin 98.5 0.0033 7.2E-08 65.5 42.8 7 700-706 501-507 (546)
69 KOG0994 Extracellular matrix g 98.4 0.0057 1.2E-07 67.5 59.9 29 195-223 1263-1291(1758)
70 COG5540 RING-finger-containing 98.4 1.6E-07 3.4E-12 86.3 3.8 52 695-746 319-373 (374)
71 KOG0977 Nuclear envelope prote 98.4 0.0018 3.9E-08 67.5 32.7 86 608-698 295-384 (546)
72 KOG1813 Predicted E3 ubiquitin 98.4 7.6E-08 1.6E-12 88.6 1.2 46 700-746 242-287 (313)
73 TIGR00570 cdk7 CDK-activating 98.4 1.7E-07 3.8E-12 89.1 3.3 38 716-753 25-62 (309)
74 KOG4265 Predicted E3 ubiquitin 98.4 1.2E-07 2.5E-12 90.7 2.0 48 698-746 289-337 (349)
75 PF00038 Filament: Intermediat 98.4 0.0037 8E-08 63.4 37.7 39 659-697 263-303 (312)
76 PRK04863 mukB cell division pr 98.4 0.015 3.2E-07 69.9 83.7 45 180-224 437-481 (1486)
77 PF05557 MAD: Mitotic checkpoi 98.4 1.6E-06 3.4E-11 97.8 10.4 25 659-683 607-631 (722)
78 PF05483 SCP-1: Synaptonemal c 98.4 0.0058 1.3E-07 64.0 79.3 8 2-9 46-53 (786)
79 KOG2177 Predicted E3 ubiquitin 98.4 1.5E-07 3.2E-12 99.0 2.0 46 696-742 10-55 (386)
80 KOG0250 DNA repair protein RAD 98.4 0.0096 2.1E-07 66.4 70.2 15 432-446 661-675 (1074)
81 KOG4159 Predicted E3 ubiquitin 98.3 1.9E-07 4.1E-12 93.4 2.4 49 697-746 82-130 (398)
82 PRK04778 septation ring format 98.3 0.0098 2.1E-07 65.3 54.4 86 430-519 254-339 (569)
83 KOG4275 Predicted E3 ubiquitin 98.3 6.1E-08 1.3E-12 88.4 -1.7 42 700-746 301-343 (350)
84 KOG0962 DNA repair protein RAD 98.3 0.014 3.1E-07 66.8 74.9 67 662-728 1038-1116(1294)
85 KOG4628 Predicted E3 ubiquitin 98.3 3.1E-07 6.8E-12 89.0 2.6 47 700-746 230-279 (348)
86 PF14447 Prok-RING_4: Prokaryo 98.3 3.2E-07 6.9E-12 61.2 1.6 48 699-749 7-54 (55)
87 PF11789 zf-Nse: Zinc-finger o 98.3 4.3E-07 9.4E-12 63.3 2.2 42 698-739 10-53 (57)
88 COG1579 Zn-ribbon protein, pos 98.3 0.00029 6.3E-09 65.3 20.7 30 700-729 198-231 (239)
89 KOG0977 Nuclear envelope prote 98.2 0.01 2.2E-07 62.0 36.5 46 628-673 340-385 (546)
90 KOG0976 Rho/Rac1-interacting s 98.2 0.012 2.7E-07 62.4 64.7 21 40-60 44-64 (1265)
91 PF05557 MAD: Mitotic checkpoi 98.2 1.2E-05 2.7E-10 90.7 13.7 22 467-488 404-425 (722)
92 KOG0802 E3 ubiquitin ligase [P 98.2 4.2E-07 9E-12 98.2 1.8 48 700-748 292-344 (543)
93 KOG2879 Predicted E3 ubiquitin 98.2 8E-07 1.7E-11 81.0 3.0 47 699-745 239-287 (298)
94 PF06160 EzrA: Septation ring 98.2 0.018 4E-07 62.8 58.4 70 528-597 347-416 (560)
95 KOG1785 Tyrosine kinase negati 98.2 5.5E-07 1.2E-11 85.9 1.5 47 701-747 371-418 (563)
96 PF04641 Rtf2: Rtf2 RING-finge 98.2 1.1E-06 2.3E-11 85.1 3.4 56 696-753 110-169 (260)
97 PF00038 Filament: Intermediat 98.2 0.012 2.6E-07 59.7 39.4 33 241-273 6-38 (312)
98 KOG4673 Transcription factor T 98.1 0.017 3.7E-07 60.4 60.0 34 177-210 345-378 (961)
99 KOG0964 Structural maintenance 98.1 0.027 5.8E-07 61.7 77.3 18 431-448 670-687 (1200)
100 KOG0971 Microtubule-associated 98.1 0.026 5.7E-07 61.0 48.2 59 388-446 329-389 (1243)
101 PF12861 zf-Apc11: Anaphase-pr 98.1 2.3E-06 4.9E-11 63.9 2.7 47 700-746 22-83 (85)
102 KOG0018 Structural maintenance 98.0 0.043 9.4E-07 61.0 69.1 22 425-446 652-673 (1141)
103 PF09726 Macoilin: Transmembra 98.0 0.016 3.4E-07 64.1 30.7 73 610-682 588-660 (697)
104 PF06160 EzrA: Septation ring 98.0 0.048 1E-06 59.6 56.8 47 586-632 384-430 (560)
105 PRK11637 AmiB activator; Provi 98.0 0.015 3.3E-07 61.6 29.8 6 699-704 306-311 (428)
106 KOG0825 PHD Zn-finger protein 98.0 1.6E-06 3.5E-11 90.1 -0.1 49 701-750 125-176 (1134)
107 KOG0018 Structural maintenance 97.9 0.059 1.3E-06 60.0 67.1 47 178-224 303-349 (1141)
108 KOG3039 Uncharacterized conser 97.9 6.1E-06 1.3E-10 73.6 3.0 54 698-752 220-277 (303)
109 COG5222 Uncharacterized conser 97.9 4.3E-06 9.3E-11 76.7 1.8 43 700-742 275-318 (427)
110 KOG1002 Nucleotide excision re 97.9 3.6E-06 7.8E-11 83.6 1.4 53 696-748 533-589 (791)
111 PHA02562 46 endonuclease subun 97.9 0.024 5.1E-07 63.1 31.7 62 594-655 336-397 (562)
112 PRK11637 AmiB activator; Provi 97.9 0.039 8.5E-07 58.5 31.6 18 429-446 44-61 (428)
113 KOG2660 Locus-specific chromos 97.9 3E-06 6.5E-11 80.0 0.5 53 694-747 10-63 (331)
114 KOG1571 Predicted E3 ubiquitin 97.9 2.7E-06 5.8E-11 81.6 0.1 43 700-746 306-348 (355)
115 KOG4643 Uncharacterized coiled 97.9 0.068 1.5E-06 58.9 57.6 42 179-220 302-343 (1195)
116 PHA02562 46 endonuclease subun 97.9 0.018 3.9E-07 64.0 30.1 62 479-540 216-277 (562)
117 KOG0297 TNF receptor-associate 97.8 7.6E-06 1.7E-10 83.9 2.1 53 696-749 18-71 (391)
118 KOG1003 Actin filament-coating 97.8 0.022 4.8E-07 50.0 26.9 66 562-627 90-155 (205)
119 PF14662 CCDC155: Coiled-coil 97.8 0.025 5.4E-07 49.9 27.1 13 609-621 116-128 (193)
120 KOG4643 Uncharacterized coiled 97.7 0.14 2.9E-06 56.7 67.6 44 180-223 179-222 (1195)
121 KOG1039 Predicted E3 ubiquitin 97.7 1.9E-05 4.1E-10 77.5 2.0 48 699-746 161-222 (344)
122 PF14570 zf-RING_4: RING/Ubox 97.6 3.7E-05 8E-10 50.5 2.3 44 702-745 1-48 (48)
123 KOG0946 ER-Golgi vesicle-tethe 97.6 0.12 2.7E-06 55.6 29.0 30 652-681 912-941 (970)
124 KOG4692 Predicted E3 ubiquitin 97.6 2.4E-05 5.3E-10 73.7 1.9 46 700-746 423-468 (489)
125 KOG0804 Cytoplasmic Zn-finger 97.6 2.6E-05 5.7E-10 76.5 2.0 47 697-746 173-223 (493)
126 PF12718 Tropomyosin_1: Tropom 97.6 0.023 5E-07 49.0 19.4 33 646-678 103-135 (143)
127 PF09726 Macoilin: Transmembra 97.6 0.21 4.5E-06 55.5 31.9 66 632-697 589-656 (697)
128 COG1340 Uncharacterized archae 97.5 0.097 2.1E-06 50.1 35.2 74 591-664 168-241 (294)
129 KOG0828 Predicted E3 ubiquitin 97.5 3.8E-05 8.2E-10 76.0 1.7 49 698-746 570-635 (636)
130 COG5220 TFB3 Cdk activating ki 97.5 1.9E-05 4.2E-10 70.1 -0.5 46 700-745 11-64 (314)
131 COG1340 Uncharacterized archae 97.4 0.14 3.1E-06 49.0 33.9 40 610-649 201-240 (294)
132 PF05622 HOOK: HOOK protein; 97.4 4.3E-05 9.4E-10 86.1 0.0 12 733-744 692-703 (713)
133 KOG0946 ER-Golgi vesicle-tethe 97.3 0.34 7.4E-06 52.4 29.8 10 392-401 686-695 (970)
134 KOG4673 Transcription factor T 97.3 0.35 7.5E-06 51.1 64.7 9 20-28 309-317 (961)
135 COG5194 APC11 Component of SCF 97.3 0.00021 4.6E-09 51.4 2.5 47 701-748 33-84 (88)
136 PF05667 DUF812: Protein of un 97.2 0.46 1E-05 51.7 34.4 25 425-449 394-418 (594)
137 PRK09039 hypothetical protein; 97.2 0.15 3.2E-06 51.8 23.2 9 714-722 265-273 (343)
138 KOG1001 Helicase-like transcri 97.2 7.2E-05 1.6E-09 81.5 -0.5 48 700-748 455-503 (674)
139 KOG2817 Predicted E3 ubiquitin 97.1 0.00028 6.1E-09 69.0 2.9 60 695-754 330-394 (394)
140 KOG0826 Predicted E3 ubiquitin 97.1 0.00014 3E-09 68.6 0.5 53 700-753 301-354 (357)
141 COG4372 Uncharacterized protei 97.1 0.35 7.6E-06 47.4 31.6 18 653-670 261-278 (499)
142 PF14915 CCDC144C: CCDC144C pr 97.1 0.3 6.5E-06 46.5 36.5 103 529-631 134-236 (305)
143 KOG0995 Centromere-associated 97.0 0.6 1.3E-05 48.8 44.9 59 392-453 302-360 (581)
144 KOG1814 Predicted E3 ubiquitin 97.0 0.00067 1.5E-08 66.3 3.9 43 699-741 184-236 (445)
145 KOG1734 Predicted RING-contain 97.0 0.00018 3.9E-09 65.5 0.0 52 700-751 225-287 (328)
146 COG5175 MOT2 Transcriptional r 96.9 0.00035 7.5E-09 65.8 1.5 53 700-752 15-71 (480)
147 KOG1493 Anaphase-promoting com 96.9 0.00023 4.9E-09 50.8 -0.1 35 712-746 45-82 (84)
148 PF15070 GOLGA2L5: Putative go 96.9 0.99 2.2E-05 49.5 52.6 42 103-144 22-63 (617)
149 KOG1029 Endocytic adaptor prot 96.8 1 2.2E-05 48.6 32.7 12 742-753 710-721 (1118)
150 KOG3002 Zn finger protein [Gen 96.8 0.0007 1.5E-08 65.8 2.2 45 698-746 47-92 (299)
151 COG5236 Uncharacterized conser 96.7 0.00079 1.7E-08 63.6 2.0 45 699-743 61-106 (493)
152 KOG4593 Mitotic checkpoint pro 96.7 1.2 2.6E-05 47.8 64.1 25 335-359 302-326 (716)
153 KOG3800 Predicted E3 ubiquitin 96.7 0.00085 1.8E-08 62.5 1.9 34 716-749 22-55 (300)
154 KOG1100 Predicted E3 ubiquitin 96.7 0.00086 1.9E-08 61.6 1.8 41 701-746 160-201 (207)
155 COG4942 Membrane-bound metallo 96.7 0.94 2E-05 46.1 30.0 14 433-446 39-52 (420)
156 PF05290 Baculo_IE-1: Baculovi 96.6 0.0057 1.2E-07 49.7 6.1 51 698-748 79-135 (140)
157 PF15070 GOLGA2L5: Putative go 96.6 1.5 3.2E-05 48.2 51.8 26 198-223 42-67 (617)
158 KOG3161 Predicted E3 ubiquitin 96.6 0.0006 1.3E-08 70.1 0.4 37 699-738 11-51 (861)
159 PF13514 AAA_27: AAA domain 96.6 2.8 6.2E-05 50.7 74.3 50 50-99 156-205 (1111)
160 KOG0995 Centromere-associated 96.6 1.3 2.8E-05 46.5 46.0 106 23-131 217-322 (581)
161 KOG4185 Predicted E3 ubiquitin 96.5 0.00095 2.1E-08 66.9 1.5 40 710-749 20-61 (296)
162 KOG2034 Vacuolar sorting prote 96.5 0.0038 8.3E-08 67.7 5.9 36 696-731 814-851 (911)
163 KOG2114 Vacuolar assembly/sort 96.5 0.005 1.1E-07 66.3 6.7 80 646-742 800-880 (933)
164 KOG3579 Predicted E3 ubiquitin 96.5 0.001 2.2E-08 61.2 1.4 41 699-739 268-316 (352)
165 PF09730 BicD: Microtubule-ass 96.4 2.1 4.5E-05 47.4 66.8 35 186-220 84-118 (717)
166 smart00744 RINGv The RING-vari 96.4 0.0026 5.6E-08 43.1 2.4 41 701-741 1-49 (49)
167 PF08647 BRE1: BRE1 E3 ubiquit 96.4 0.14 3.1E-06 40.7 12.7 79 510-588 2-80 (96)
168 KOG4593 Mitotic checkpoint pro 96.3 2 4.3E-05 46.2 64.4 14 666-679 601-614 (716)
169 PF11793 FANCL_C: FANCL C-term 96.3 0.00085 1.8E-08 49.6 -0.5 48 700-747 3-68 (70)
170 KOG2930 SCF ubiquitin ligase, 96.2 0.0028 6E-08 48.5 2.0 29 716-745 80-108 (114)
171 PHA03096 p28-like protein; Pro 96.2 0.002 4.3E-08 62.1 1.4 45 700-744 179-233 (284)
172 PF15619 Lebercilin: Ciliary p 96.2 0.98 2.1E-05 41.3 25.5 37 535-571 64-100 (194)
173 PF10473 CENP-F_leu_zip: Leuci 96.2 0.68 1.5E-05 39.4 20.5 34 556-589 27-60 (140)
174 PF06906 DUF1272: Protein of u 96.2 0.0055 1.2E-07 41.2 2.8 48 699-749 5-56 (57)
175 PF02891 zf-MIZ: MIZ/SP-RING z 96.1 0.0039 8.4E-08 42.4 2.2 44 700-743 3-50 (50)
176 COG5185 HEC1 Protein involved 96.1 1.8 3.9E-05 43.9 34.4 95 36-130 263-357 (622)
177 KOG3113 Uncharacterized conser 96.1 0.004 8.7E-08 56.5 2.8 53 697-752 109-165 (293)
178 COG0419 SbcC ATPase involved i 96.1 4.5 9.8E-05 47.8 76.0 38 711-748 812-855 (908)
179 PF04849 HAP1_N: HAP1 N-termin 95.9 1.9 4.1E-05 42.0 28.1 14 531-544 166-179 (306)
180 COG5219 Uncharacterized conser 95.9 0.003 6.4E-08 68.2 1.1 46 700-745 1470-1523(1525)
181 KOG3039 Uncharacterized conser 95.9 0.0052 1.1E-07 55.5 2.3 36 695-730 39-74 (303)
182 KOG0827 Predicted E3 ubiquitin 95.8 0.004 8.6E-08 60.3 1.6 36 714-749 23-60 (465)
183 KOG1645 RING-finger-containing 95.8 0.0023 4.9E-08 62.5 0.0 42 712-753 22-64 (463)
184 PF14915 CCDC144C: CCDC144C pr 95.8 1.9 4E-05 41.3 40.1 11 436-446 123-133 (305)
185 PF10367 Vps39_2: Vacuolar sor 95.8 0.011 2.5E-07 49.0 3.9 30 698-727 77-108 (109)
186 PF04849 HAP1_N: HAP1 N-termin 95.7 2.4 5.1E-05 41.4 27.5 25 673-697 277-303 (306)
187 KOG4362 Transcriptional regula 95.6 0.0028 6E-08 67.5 -0.4 53 693-745 15-69 (684)
188 COG5185 HEC1 Protein involved 95.6 3.1 6.6E-05 42.3 40.0 7 377-383 316-322 (622)
189 PF09728 Taxilin: Myosin-like 95.6 2.9 6.2E-05 41.7 40.0 75 604-678 225-299 (309)
190 PF10146 zf-C4H2: Zinc finger- 95.6 1.4 3E-05 41.5 17.1 27 721-748 196-222 (230)
191 PF09789 DUF2353: Uncharacteri 95.6 2.7 5.9E-05 41.4 23.4 13 469-481 16-28 (319)
192 COG5109 Uncharacterized conser 95.4 0.0096 2.1E-07 55.9 2.3 60 695-754 332-396 (396)
193 KOG1941 Acetylcholine receptor 95.3 0.0047 1E-07 59.8 0.1 46 700-745 366-416 (518)
194 TIGR03185 DNA_S_dndD DNA sulfu 95.3 6.6 0.00014 44.4 39.3 25 293-317 264-288 (650)
195 PF10481 CENP-F_N: Cenp-F N-te 95.3 1.7 3.6E-05 40.7 16.1 28 651-678 102-129 (307)
196 KOG0963 Transcription factor/C 95.3 5 0.00011 42.8 43.3 28 578-605 314-341 (629)
197 KOG0971 Microtubule-associated 95.3 6.3 0.00014 43.8 70.1 28 725-752 1210-1238(1243)
198 KOG0980 Actin-binding protein 95.3 6.3 0.00014 43.8 32.3 19 431-449 332-350 (980)
199 KOG1812 Predicted E3 ubiquitin 95.1 0.0072 1.6E-07 61.9 0.8 51 699-749 146-207 (384)
200 PF13851 GAS: Growth-arrest sp 95.1 2.9 6.2E-05 38.8 22.9 100 471-570 29-131 (201)
201 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.0 2 4.3E-05 36.8 18.2 23 659-681 99-121 (132)
202 KOG0298 DEAD box-containing he 95.0 0.063 1.4E-06 61.1 7.5 47 698-745 1152-1199(1394)
203 COG3813 Uncharacterized protei 95.0 0.024 5.2E-07 40.1 2.7 49 700-751 6-58 (84)
204 KOG3970 Predicted E3 ubiquitin 94.7 0.02 4.3E-07 50.9 2.2 47 700-746 51-106 (299)
205 KOG4445 Uncharacterized conser 94.7 0.028 6.2E-07 52.6 3.3 48 700-747 116-188 (368)
206 PF09730 BicD: Microtubule-ass 94.6 9.2 0.0002 42.6 65.0 23 75-97 69-91 (717)
207 KOG0825 PHD Zn-finger protein 94.6 0.012 2.6E-07 62.4 0.8 47 700-746 97-155 (1134)
208 KOG2932 E3 ubiquitin ligase in 94.5 0.014 3.1E-07 54.7 0.8 42 700-744 91-133 (389)
209 PF09728 Taxilin: Myosin-like 94.5 5.9 0.00013 39.6 40.1 13 652-664 287-299 (309)
210 TIGR01562 FdhE formate dehydro 94.4 0.0094 2E-07 58.2 -0.5 44 699-743 184-233 (305)
211 KOG4185 Predicted E3 ubiquitin 94.4 0.16 3.4E-06 51.0 8.2 44 700-743 208-265 (296)
212 PF07800 DUF1644: Protein of u 94.4 0.016 3.5E-07 49.1 0.9 18 700-717 3-20 (162)
213 PF10272 Tmpp129: Putative tra 94.3 0.032 6.9E-07 55.6 3.0 33 720-752 314-358 (358)
214 PF07111 HCR: Alpha helical co 94.2 9.9 0.00021 41.3 71.3 25 425-449 471-495 (739)
215 KOG1815 Predicted E3 ubiquitin 94.2 0.029 6.3E-07 59.4 2.5 53 698-750 69-131 (444)
216 PF14569 zf-UDP: Zinc-binding 94.1 0.044 9.5E-07 39.9 2.4 47 700-746 10-63 (80)
217 PF08614 ATG16: Autophagy prot 94.1 1 2.2E-05 41.7 12.2 27 539-565 151-177 (194)
218 KOG2113 Predicted RNA binding 94.0 0.033 7.2E-07 52.5 2.2 48 694-744 338-386 (394)
219 PF03854 zf-P11: P-11 zinc fin 94.0 0.026 5.5E-07 36.5 1.0 43 700-745 3-46 (50)
220 COG4647 AcxC Acetone carboxyla 93.9 0.028 6.1E-07 45.0 1.4 22 704-725 62-83 (165)
221 PF05010 TACC: Transforming ac 93.7 5.6 0.00012 36.7 29.1 17 658-674 168-184 (207)
222 PF12325 TMF_TATA_bd: TATA ele 93.7 3.5 7.6E-05 34.2 14.5 19 428-446 19-37 (120)
223 PF07191 zinc-ribbons_6: zinc- 93.6 0.0071 1.5E-07 43.4 -2.1 40 700-745 2-41 (70)
224 PF13240 zinc_ribbon_2: zinc-r 93.6 0.013 2.9E-07 32.2 -0.7 23 721-744 1-23 (23)
225 KOG0979 Structural maintenance 93.5 16 0.00036 41.5 59.8 42 98-139 183-224 (1072)
226 PRK03564 formate dehydrogenase 93.4 0.026 5.5E-07 55.2 0.3 43 699-742 187-234 (309)
227 KOG1428 Inhibitor of type V ad 93.2 0.053 1.1E-06 61.6 2.4 46 700-745 3487-3544(3738)
228 TIGR03007 pepcterm_ChnLen poly 93.1 16 0.00035 39.9 23.0 31 32-62 156-186 (498)
229 PF04216 FdhE: Protein involve 93.0 0.02 4.4E-07 56.9 -0.9 43 700-743 173-220 (290)
230 PF09986 DUF2225: Uncharacteri 92.9 0.044 9.5E-07 51.3 1.2 55 697-752 3-66 (214)
231 KOG0980 Actin-binding protein 92.7 20 0.00043 40.1 37.2 8 687-694 599-606 (980)
232 PF13248 zf-ribbon_3: zinc-rib 92.7 0.027 5.9E-07 32.2 -0.3 24 720-744 3-26 (26)
233 PF05883 Baculo_RING: Baculovi 92.7 0.063 1.4E-06 44.5 1.6 33 699-731 26-67 (134)
234 PF08746 zf-RING-like: RING-li 92.7 0.12 2.7E-06 33.8 2.7 39 702-740 1-43 (43)
235 PF08317 Spc7: Spc7 kinetochor 92.7 13 0.00028 37.8 26.8 13 685-697 277-289 (325)
236 PF07975 C1_4: TFIIH C1-like d 92.6 0.11 2.3E-06 35.2 2.3 39 702-741 2-50 (51)
237 TIGR01843 type_I_hlyD type I s 92.2 18 0.0004 38.4 24.8 13 477-489 82-94 (423)
238 KOG3899 Uncharacterized conser 91.8 0.059 1.3E-06 50.2 0.6 36 717-752 325-372 (381)
239 TIGR01005 eps_transp_fam exopo 91.8 25 0.00054 40.8 22.0 17 476-492 201-217 (754)
240 PF02318 FYVE_2: FYVE-type zin 91.7 0.15 3.3E-06 42.6 2.8 44 699-742 54-102 (118)
241 KOG0827 Predicted E3 ubiquitin 91.6 1 2.2E-05 44.4 8.5 45 701-746 198-246 (465)
242 PF10235 Cript: Microtubule-as 91.6 0.095 2.1E-06 40.2 1.4 37 700-746 45-81 (90)
243 KOG0963 Transcription factor/C 91.5 22 0.00049 38.1 46.5 11 234-244 68-78 (629)
244 PF04111 APG6: Autophagy prote 91.5 5.2 0.00011 40.1 13.9 72 610-681 65-136 (314)
245 KOG0962 DNA repair protein RAD 91.4 37 0.0008 40.4 78.2 32 250-281 635-666 (1294)
246 TIGR03185 DNA_S_dndD DNA sulfu 91.4 30 0.00065 39.2 40.6 6 749-754 645-650 (650)
247 TIGR03007 pepcterm_ChnLen poly 91.2 26 0.00057 38.2 23.8 20 475-494 167-186 (498)
248 cd00065 FYVE FYVE domain; Zinc 91.0 0.069 1.5E-06 37.9 0.1 33 700-732 3-39 (57)
249 TIGR00634 recN DNA repair prot 91.0 29 0.00064 38.5 24.6 34 402-435 186-219 (563)
250 PF10571 UPF0547: Uncharacteri 91.0 0.064 1.4E-06 30.5 -0.1 12 734-745 14-25 (26)
251 PF08317 Spc7: Spc7 kinetochor 90.8 20 0.00044 36.3 29.8 17 665-681 276-292 (325)
252 TIGR01843 type_I_hlyD type I s 90.8 25 0.00055 37.4 24.0 10 662-671 257-266 (423)
253 PF10481 CENP-F_N: Cenp-F N-te 90.5 16 0.00035 34.6 19.6 13 659-671 177-189 (307)
254 KOG4360 Uncharacterized coiled 90.3 25 0.00055 36.6 18.5 76 505-580 213-288 (596)
255 PF01363 FYVE: FYVE zinc finge 90.2 0.019 4.1E-07 42.8 -3.6 33 699-731 9-45 (69)
256 KOG2979 Protein involved in DN 90.1 7.2 0.00016 36.6 12.1 47 699-745 176-226 (262)
257 KOG0993 Rab5 GTPase effector R 90.0 23 0.0005 35.6 35.4 77 649-732 425-507 (542)
258 KOG4718 Non-SMC (structural ma 89.9 0.3 6.5E-06 43.6 3.1 48 699-747 181-229 (235)
259 PF04111 APG6: Autophagy prote 89.9 8.4 0.00018 38.7 13.7 6 740-745 271-276 (314)
260 PF06008 Laminin_I: Laminin Do 89.7 22 0.00047 34.9 32.0 15 432-446 52-66 (264)
261 PF06008 Laminin_I: Laminin Do 89.4 23 0.00049 34.7 31.9 7 624-630 193-199 (264)
262 TIGR01005 eps_transp_fam exopo 89.3 49 0.0011 38.4 24.5 17 467-483 206-222 (754)
263 smart00064 FYVE Protein presen 89.2 0.093 2E-06 38.8 -0.5 33 700-732 11-47 (68)
264 COG4026 Uncharacterized protei 89.2 5.6 0.00012 36.0 10.3 75 607-681 133-207 (290)
265 COG4477 EzrA Negative regulato 89.2 33 0.00071 36.2 52.2 41 405-446 229-269 (570)
266 PF05605 zf-Di19: Drought indu 89.0 0.15 3.2E-06 35.6 0.5 41 699-746 2-43 (54)
267 PRK04023 DNA polymerase II lar 88.4 0.18 4E-06 56.2 0.9 46 700-748 627-677 (1121)
268 KOG1940 Zn-finger protein [Gen 88.1 0.34 7.3E-06 46.4 2.3 42 700-742 159-204 (276)
269 PF14353 CpXC: CpXC protein 87.7 0.45 9.7E-06 40.6 2.7 47 700-746 2-50 (128)
270 PF13851 GAS: Growth-arrest sp 87.7 24 0.00051 32.8 26.0 25 604-628 102-126 (201)
271 PF10168 Nup88: Nuclear pore c 87.6 56 0.0012 37.1 24.4 23 596-618 640-662 (717)
272 PF10498 IFT57: Intra-flagella 87.5 22 0.00048 36.3 14.8 45 180-224 275-319 (359)
273 PF09538 FYDLN_acid: Protein o 87.4 0.3 6.5E-06 39.5 1.3 13 698-710 8-20 (108)
274 PF04710 Pellino: Pellino; In 87.3 0.18 3.9E-06 49.9 0.0 49 699-747 328-403 (416)
275 KOG3799 Rab3 effector RIM1 and 86.7 2.5 5.5E-05 34.6 6.1 19 698-720 64-83 (169)
276 PF08882 Acetone_carb_G: Aceto 86.7 0.16 3.4E-06 40.2 -0.6 14 712-725 24-37 (112)
277 COG3058 FdhE Uncharacterized p 86.5 0.31 6.8E-06 45.6 1.1 46 697-743 183-234 (308)
278 PF09755 DUF2046: Uncharacteri 86.5 35 0.00075 33.6 35.8 23 393-415 180-202 (310)
279 PF05911 DUF869: Plant protein 86.5 65 0.0014 36.7 69.0 25 242-266 137-161 (769)
280 PLN02189 cellulose synthase 86.4 0.45 9.8E-06 54.1 2.5 46 700-745 35-87 (1040)
281 COG3364 Zn-ribbon containing p 86.0 0.38 8.3E-06 37.1 1.2 25 714-743 5-29 (112)
282 PLN02436 cellulose synthase A 86.0 0.48 1E-05 53.9 2.4 46 700-745 37-89 (1094)
283 PF09738 DUF2051: Double stran 85.8 24 0.00052 34.9 13.6 47 579-625 117-163 (302)
284 KOG3842 Adaptor protein Pellin 85.6 0.59 1.3E-05 44.4 2.4 35 713-747 374-416 (429)
285 COG4306 Uncharacterized protei 85.6 0.4 8.8E-06 38.4 1.1 25 720-748 29-53 (160)
286 PF10083 DUF2321: Uncharacteri 85.5 0.44 9.6E-06 40.5 1.4 27 718-748 27-53 (158)
287 KOG2068 MOT2 transcription fac 85.3 0.58 1.2E-05 45.5 2.3 47 700-747 250-300 (327)
288 KOG1899 LAR transmembrane tyro 85.3 58 0.0013 35.0 21.4 12 736-747 389-400 (861)
289 PF09755 DUF2046: Uncharacteri 85.2 40 0.00087 33.1 30.9 18 659-676 230-247 (310)
290 COG4026 Uncharacterized protei 84.8 27 0.00059 31.8 12.0 60 73-132 147-206 (290)
291 PF15616 TerY-C: TerY-C metal 84.8 0.5 1.1E-05 39.5 1.4 43 696-745 74-116 (131)
292 KOG2113 Predicted RNA binding 84.7 0.26 5.6E-06 46.7 -0.3 49 697-745 134-183 (394)
293 PRK10884 SH3 domain-containing 84.4 25 0.00054 32.7 12.3 17 471-487 95-111 (206)
294 KOG1812 Predicted E3 ubiquitin 84.4 0.45 9.9E-06 49.0 1.2 43 697-740 304-351 (384)
295 KOG4739 Uncharacterized protei 84.4 0.29 6.3E-06 45.3 -0.1 23 709-731 15-37 (233)
296 KOG1729 FYVE finger containing 84.3 0.19 4.1E-06 48.7 -1.4 46 700-745 169-225 (288)
297 COG2433 Uncharacterized conser 84.2 31 0.00068 37.0 14.1 29 642-670 479-507 (652)
298 PLN02638 cellulose synthase A 84.0 0.69 1.5E-05 52.9 2.5 46 700-745 18-70 (1079)
299 PLN02195 cellulose synthase A 84.0 0.81 1.8E-05 51.7 3.0 46 700-745 7-59 (977)
300 KOG1842 FYVE finger-containing 83.8 0.59 1.3E-05 46.9 1.7 67 664-730 138-215 (505)
301 PF10267 Tmemb_cc2: Predicted 83.3 13 0.00029 38.2 11.0 18 722-739 361-378 (395)
302 PF12773 DZR: Double zinc ribb 83.2 1.1 2.4E-05 30.6 2.4 31 718-748 11-43 (50)
303 COG1655 Uncharacterized protei 83.2 0.17 3.6E-06 45.8 -2.1 20 698-717 18-38 (267)
304 PF09304 Cortex-I_coil: Cortex 83.2 22 0.00048 28.5 15.2 48 470-517 17-64 (107)
305 COG4477 EzrA Negative regulato 83.1 68 0.0015 34.0 52.0 113 427-548 349-470 (570)
306 KOG4642 Chaperone-dependent E3 83.1 1.2 2.6E-05 41.3 3.1 54 700-753 212-265 (284)
307 PLN02915 cellulose synthase A 82.9 0.8 1.7E-05 52.2 2.5 46 700-745 16-68 (1044)
308 KOG1952 Transcription factor N 82.7 1.2 2.5E-05 49.0 3.4 45 699-743 191-245 (950)
309 cd00350 rubredoxin_like Rubred 82.4 0.87 1.9E-05 27.8 1.4 11 734-744 17-27 (33)
310 PF14446 Prok-RING_1: Prokaryo 81.8 1.5 3.3E-05 30.0 2.5 41 700-745 6-52 (54)
311 PF12660 zf-TFIIIC: Putative z 81.3 0.17 3.7E-06 40.5 -2.5 47 701-747 16-68 (99)
312 PF00769 ERM: Ezrin/radixin/mo 81.3 54 0.0012 31.6 18.0 22 660-681 184-205 (246)
313 PF07111 HCR: Alpha helical co 81.2 93 0.002 34.3 73.9 14 666-679 640-653 (739)
314 PLN02400 cellulose synthase 81.2 0.84 1.8E-05 52.2 1.9 46 700-745 37-89 (1085)
315 PHA02862 5L protein; Provision 81.1 1.5 3.2E-05 36.8 2.7 46 700-746 3-54 (156)
316 PF05384 DegS: Sensor protein 81.1 39 0.00083 29.8 21.8 31 468-498 26-56 (159)
317 KOG0249 LAR-interacting protei 81.0 93 0.002 34.2 18.4 29 650-678 229-257 (916)
318 COG1867 TRM1 N2,N2-dimethylgua 80.8 0.57 1.2E-05 46.6 0.3 35 717-753 237-274 (380)
319 KOG2462 C2H2-type Zn-finger pr 80.7 0.4 8.7E-06 45.1 -0.7 14 698-711 160-173 (279)
320 PRK14714 DNA polymerase II lar 80.5 0.62 1.3E-05 53.8 0.6 48 700-748 668-723 (1337)
321 PF13514 AAA_27: AAA domain 80.5 1.5E+02 0.0032 36.3 82.2 37 30-66 242-278 (1111)
322 PRK11281 hypothetical protein; 80.2 1.4E+02 0.0031 35.9 46.7 23 427-449 194-216 (1113)
323 smart00787 Spc7 Spc7 kinetocho 80.2 69 0.0015 32.2 27.1 11 537-547 149-159 (312)
324 PHA02825 LAP/PHD finger-like p 80.1 1.9 4.1E-05 37.1 3.1 48 699-747 8-61 (162)
325 PF14319 Zn_Tnp_IS91: Transpos 80.1 0.4 8.8E-06 39.3 -0.8 37 700-743 31-69 (111)
326 KOG2462 C2H2-type Zn-finger pr 80.0 1.1 2.4E-05 42.3 1.9 16 700-715 188-203 (279)
327 KOG4218 Nuclear hormone recept 79.6 0.81 1.8E-05 44.1 0.9 25 700-727 16-40 (475)
328 KOG3268 Predicted E3 ubiquitin 79.3 1.3 2.8E-05 38.2 2.0 31 716-746 189-229 (234)
329 COG1885 Uncharacterized protei 79.3 0.97 2.1E-05 35.1 1.1 15 733-747 48-62 (115)
330 PF00769 ERM: Ezrin/radixin/mo 79.3 63 0.0014 31.2 18.0 9 661-669 192-200 (246)
331 TIGR00622 ssl1 transcription f 78.7 1.1 2.5E-05 36.1 1.4 41 700-741 56-110 (112)
332 PRK10929 putative mechanosensi 78.2 1.6E+02 0.0035 35.4 42.2 23 427-449 175-197 (1109)
333 PF14205 Cys_rich_KTR: Cystein 78.0 0.83 1.8E-05 30.9 0.4 29 698-726 3-35 (55)
334 PF09538 FYDLN_acid: Protein o 77.9 0.98 2.1E-05 36.6 0.8 28 720-747 10-39 (108)
335 TIGR01000 bacteriocin_acc bact 77.7 1.1E+02 0.0023 33.0 22.4 24 651-674 291-314 (457)
336 PF09723 Zn-ribbon_8: Zinc rib 77.7 0.54 1.2E-05 30.6 -0.6 26 715-742 9-34 (42)
337 PF03833 PolC_DP2: DNA polymer 77.4 0.75 1.6E-05 50.7 0.0 46 700-748 656-706 (900)
338 PF04710 Pellino: Pellino; In 77.3 0.75 1.6E-05 45.8 0.0 32 712-743 304-337 (416)
339 PTZ00303 phosphatidylinositol 77.3 1.2 2.6E-05 48.0 1.4 33 700-732 461-502 (1374)
340 KOG0999 Microtubule-associated 77.2 1E+02 0.0023 32.6 69.1 25 292-316 230-254 (772)
341 PF09297 zf-NADH-PPase: NADH p 77.1 0.67 1.5E-05 28.0 -0.2 25 718-742 2-29 (32)
342 PRK15422 septal ring assembly 77.0 28 0.00062 26.0 10.5 64 73-136 9-72 (79)
343 PRK05978 hypothetical protein; 76.7 1.4 3.1E-05 37.9 1.5 32 700-747 34-65 (148)
344 PF14197 Cep57_CLD_2: Centroso 76.5 28 0.0006 25.7 9.4 61 75-135 5-65 (69)
345 PF12906 RINGv: RING-variant d 76.5 1.9 4.2E-05 28.9 1.8 39 702-740 1-47 (47)
346 PF07295 DUF1451: Protein of u 76.4 45 0.00097 29.0 10.4 28 711-743 112-139 (146)
347 KOG1356 Putative transcription 76.3 0.82 1.8E-05 50.1 -0.1 47 700-746 230-283 (889)
348 KOG2991 Splicing regulator [RN 76.3 69 0.0015 30.1 23.5 35 618-652 259-293 (330)
349 PRK00420 hypothetical protein; 75.6 1 2.2E-05 36.6 0.3 10 700-709 24-33 (112)
350 PF08273 Prim_Zn_Ribbon: Zinc- 75.4 0.67 1.5E-05 29.6 -0.6 26 700-725 4-32 (40)
351 KOG3842 Adaptor protein Pellin 75.1 2.2 4.7E-05 40.7 2.4 53 687-742 280-349 (429)
352 KOG1815 Predicted E3 ubiquitin 75.1 1.5 3.3E-05 46.6 1.6 22 710-731 177-198 (444)
353 KOG0396 Uncharacterized conser 75.0 1.3 2.9E-05 43.5 1.0 43 712-754 346-388 (389)
354 PF06818 Fez1: Fez1; InterPro 75.0 69 0.0015 29.4 22.1 13 532-544 66-78 (202)
355 PF12795 MscS_porin: Mechanose 74.9 82 0.0018 30.3 24.1 9 506-514 54-62 (240)
356 PF10013 DUF2256: Uncharacteri 74.7 1.7 3.6E-05 27.8 1.0 14 733-746 7-20 (42)
357 PF11559 ADIP: Afadin- and alp 74.7 59 0.0013 28.6 18.4 16 659-674 134-149 (151)
358 KOG0612 Rho-associated, coiled 74.2 1.9E+02 0.0042 34.3 62.0 41 94-134 492-532 (1317)
359 PF12329 TMF_DNA_bd: TATA elem 73.9 35 0.00076 25.6 10.2 15 82-96 12-26 (74)
360 PF15397 DUF4618: Domain of un 73.7 88 0.0019 30.1 28.1 66 76-144 39-108 (258)
361 PF07889 DUF1664: Protein of u 73.0 56 0.0012 27.5 12.9 19 73-91 66-84 (126)
362 PF14369 zf-RING_3: zinc-finge 72.5 0.77 1.7E-05 28.4 -0.8 26 720-745 3-32 (35)
363 PRK10869 recombination and rep 72.1 1.6E+02 0.0036 32.5 25.9 26 409-434 189-214 (553)
364 KOG0309 Conserved WD40 repeat- 71.8 2.6 5.7E-05 45.5 2.3 41 700-741 1029-1072(1081)
365 PF04423 Rad50_zn_hook: Rad50 71.8 2.5 5.5E-05 29.4 1.5 10 701-710 22-31 (54)
366 PRK00420 hypothetical protein; 71.7 0.95 2.1E-05 36.7 -0.7 27 721-747 25-53 (112)
367 KOG2807 RNA polymerase II tran 71.7 1.1 2.4E-05 43.0 -0.4 25 720-744 331-355 (378)
368 PF05278 PEARLI-4: Arabidopsis 71.6 1E+02 0.0022 29.8 15.4 66 612-677 196-261 (269)
369 PF07503 zf-HYPF: HypF finger; 71.2 4.3 9.4E-05 25.1 2.2 26 721-746 1-33 (35)
370 PRK00564 hypA hydrogenase nick 71.0 1.3 2.8E-05 36.8 -0.1 26 718-743 70-97 (117)
371 COG1592 Rubrerythrin [Energy p 70.7 1.2 2.7E-05 39.0 -0.3 26 699-744 134-159 (166)
372 KOG0824 Predicted E3 ubiquitin 70.6 1.2 2.7E-05 42.4 -0.3 47 699-746 105-152 (324)
373 PF09787 Golgin_A5: Golgin sub 70.3 1.7E+02 0.0037 32.0 34.7 14 435-448 158-171 (511)
374 PRK00398 rpoP DNA-directed RNA 70.2 0.74 1.6E-05 30.8 -1.4 14 734-747 21-34 (46)
375 PF07754 DUF1610: Domain of un 70.0 0.99 2.2E-05 25.0 -0.6 8 734-741 16-23 (24)
376 PRK11032 hypothetical protein; 69.2 82 0.0018 27.8 12.1 28 711-743 124-151 (160)
377 COG2816 NPY1 NTP pyrophosphohy 69.2 1.6 3.4E-05 41.9 0.0 31 717-747 109-142 (279)
378 PRK06266 transcription initiat 69.1 5.4 0.00012 36.1 3.4 34 699-748 117-150 (178)
379 PF08772 NOB1_Zn_bind: Nin one 69.1 0.98 2.1E-05 33.4 -1.0 11 700-710 10-20 (73)
380 smart00290 ZnF_UBP Ubiquitin C 68.5 3 6.5E-05 28.4 1.3 24 701-724 1-24 (50)
381 PHA02768 hypothetical protein; 68.3 1.8 3.8E-05 29.9 0.1 39 700-747 6-44 (55)
382 TIGR02300 FYDLN_acid conserved 68.2 2.7 5.8E-05 34.6 1.1 29 696-724 6-39 (129)
383 PF10186 Atg14: UV radiation r 68.2 1.3E+02 0.0029 30.0 19.7 9 700-708 174-182 (302)
384 PRK14559 putative protein seri 67.8 2.9 6.4E-05 46.2 1.8 25 721-746 29-53 (645)
385 PRK10246 exonuclease subunit S 67.8 2.9E+02 0.0062 33.6 82.0 15 735-749 976-990 (1047)
386 KOG2463 Predicted RNA-binding 67.8 1.1 2.3E-05 43.2 -1.3 43 699-746 242-291 (376)
387 PF13913 zf-C2HC_2: zinc-finge 67.7 2.2 4.8E-05 24.1 0.4 13 735-747 3-15 (25)
388 TIGR00373 conserved hypothetic 67.3 3.3 7.2E-05 36.7 1.7 34 699-748 109-142 (158)
389 PLN02248 cellulose synthase-li 67.3 3.7 8E-05 47.3 2.4 33 716-749 149-181 (1135)
390 smart00778 Prim_Zn_Ribbon Zinc 67.1 2 4.4E-05 26.9 0.2 27 700-726 4-32 (37)
391 KOG1853 LIS1-interacting prote 66.9 1.1E+02 0.0025 28.6 19.8 18 429-446 137-154 (333)
392 COG2331 Uncharacterized protei 66.9 2.7 5.8E-05 30.7 0.8 30 714-745 15-44 (82)
393 PF09738 DUF2051: Double stran 66.9 1.4E+02 0.0031 29.7 14.2 13 662-674 230-242 (302)
394 KOG2169 Zn-finger transcriptio 66.9 3.5 7.7E-05 45.9 2.2 55 695-749 302-360 (636)
395 cd00729 rubredoxin_SM Rubredox 66.8 3.3 7.2E-05 25.5 1.1 10 734-743 18-27 (34)
396 PRK01343 zinc-binding protein; 66.6 3.4 7.3E-05 28.7 1.2 14 733-746 8-21 (57)
397 cd00632 Prefoldin_beta Prefold 66.2 70 0.0015 26.0 10.8 35 180-214 65-99 (105)
398 smart00132 LIM Zinc-binding do 66.1 3.3 7.1E-05 26.1 1.1 36 701-745 1-38 (39)
399 PRK11281 hypothetical protein; 65.6 3.1E+02 0.0067 33.2 44.9 14 392-405 321-334 (1113)
400 KOG1850 Myosin-like coiled-coi 65.6 1.4E+02 0.0031 29.3 39.6 320 379-717 23-346 (391)
401 PF09889 DUF2116: Uncharacteri 65.6 3.7 8E-05 28.9 1.3 15 734-748 3-17 (59)
402 PF14952 zf-tcix: Putative tre 65.5 2.7 5.9E-05 27.0 0.5 15 733-747 10-24 (44)
403 KOG3726 Uncharacterized conser 65.4 3.4 7.4E-05 44.4 1.6 39 701-743 656-698 (717)
404 PF10205 KLRAQ: Predicted coil 65.4 69 0.0015 25.6 10.7 60 609-668 12-71 (102)
405 TIGR03017 EpsF chain length de 65.2 2E+02 0.0043 30.8 22.7 189 480-678 161-369 (444)
406 KOG3362 Predicted BBOX Zn-fing 64.9 2.3 5.1E-05 35.5 0.2 33 700-733 119-152 (156)
407 KOG2807 RNA polymerase II tran 64.7 3.5 7.5E-05 39.9 1.3 41 701-742 332-375 (378)
408 KOG2789 Putative Zn-finger pro 64.6 3.3 7.2E-05 41.0 1.3 34 698-731 73-108 (482)
409 KOG4360 Uncharacterized coiled 64.6 1.9E+02 0.0042 30.5 25.0 9 703-711 381-389 (596)
410 COG3024 Uncharacterized protei 64.2 4.7 0.0001 28.4 1.6 14 734-747 7-20 (65)
411 COG4357 Zinc finger domain con 64.2 3.5 7.7E-05 31.6 1.0 54 701-754 37-102 (105)
412 PF06785 UPF0242: Uncharacteri 64.1 1.6E+02 0.0034 29.2 22.0 10 736-745 380-389 (401)
413 COG1198 PriA Primosomal protei 63.9 2.6 5.7E-05 47.0 0.5 43 699-743 435-484 (730)
414 TIGR03830 CxxCG_CxxCG_HTH puta 63.7 1.5 3.2E-05 37.4 -1.2 40 702-748 1-45 (127)
415 KOG4684 Uncharacterized conser 63.5 4.4 9.6E-05 36.3 1.7 12 734-745 189-200 (275)
416 PF10458 Val_tRNA-synt_C: Valy 63.5 55 0.0012 23.8 8.4 34 197-230 2-35 (66)
417 KOG3576 Ovo and related transc 63.2 0.72 1.6E-05 40.9 -3.1 50 698-747 116-186 (267)
418 COG1645 Uncharacterized Zn-fin 62.9 2.3 4.9E-05 35.5 -0.2 9 700-708 29-37 (131)
419 COG4338 Uncharacterized protei 62.7 2.4 5.2E-05 27.6 -0.1 12 734-745 12-23 (54)
420 KOG0249 LAR-interacting protei 62.3 2.6E+02 0.0056 31.1 19.5 34 490-523 91-124 (916)
421 PRK03922 hypothetical protein; 61.9 4.2 9E-05 32.3 1.1 15 733-747 48-62 (113)
422 COG3074 Uncharacterized protei 61.8 58 0.0013 23.5 9.8 51 83-133 19-69 (79)
423 PF15294 Leu_zip: Leucine zipp 61.8 1.6E+02 0.0035 28.7 16.0 16 474-489 130-145 (278)
424 COG0497 RecN ATPase involved i 61.8 2.5E+02 0.0053 30.7 25.3 7 700-706 394-400 (557)
425 smart00647 IBR In Between Ring 61.6 4 8.7E-05 29.5 1.0 34 698-731 17-60 (64)
426 KOG4517 Uncharacterized conser 61.4 3.2 6.8E-05 32.8 0.4 42 701-745 69-117 (117)
427 PF15290 Syntaphilin: Golgi-lo 61.2 1.6E+02 0.0035 28.4 14.7 7 716-722 248-254 (305)
428 KOG1962 B-cell receptor-associ 60.7 1.5E+02 0.0032 27.7 12.0 42 103-144 165-206 (216)
429 TIGR00100 hypA hydrogenase nic 60.5 1.9 4.2E-05 35.7 -1.0 26 718-743 69-95 (115)
430 TIGR02300 FYDLN_acid conserved 60.2 3.2 6.9E-05 34.2 0.2 28 720-747 10-39 (129)
431 PRK12495 hypothetical protein; 60.0 12 0.00027 34.2 3.8 9 700-708 43-51 (226)
432 PF06785 UPF0242: Uncharacteri 59.9 1.9E+02 0.004 28.7 19.4 145 28-204 73-220 (401)
433 KOG0288 WD40 repeat protein Ti 59.7 2.1E+02 0.0046 29.3 16.8 127 465-591 2-128 (459)
434 PF13824 zf-Mss51: Zinc-finger 59.6 3.3 7.1E-05 28.5 0.2 24 721-744 1-24 (55)
435 KOG2042 Ubiquitin fusion degra 59.5 21 0.00046 40.9 6.4 82 665-752 841-923 (943)
436 PF11932 DUF3450: Protein of u 59.4 1.8E+02 0.0038 28.3 17.6 115 513-627 23-142 (251)
437 KOG2272 Focal adhesion protein 59.1 3 6.5E-05 38.4 -0.1 43 700-745 164-206 (332)
438 PLN03086 PRLI-interacting fact 59.1 7.9 0.00017 41.8 2.9 50 695-744 449-514 (567)
439 PRK12380 hydrogenase nickel in 58.9 2.2 4.9E-05 35.2 -0.9 23 721-743 72-95 (113)
440 PF15290 Syntaphilin: Golgi-lo 58.6 1.8E+02 0.0039 28.1 14.7 107 569-675 63-169 (305)
441 KOG4302 Microtubule-associated 57.8 3.1E+02 0.0068 30.7 27.7 253 425-677 21-324 (660)
442 KOG1311 DHHC-type Zn-finger pr 57.8 3.6 7.9E-05 41.3 0.2 33 721-754 115-147 (299)
443 COG1675 TFA1 Transcription ini 57.7 17 0.00037 32.5 4.3 56 660-748 91-146 (176)
444 PF05265 DUF723: Protein of un 57.7 8.4 0.00018 27.1 1.9 34 706-741 24-60 (60)
445 KOG0230 Phosphatidylinositol-4 57.7 2.9 6.3E-05 49.2 -0.5 52 701-753 7-59 (1598)
446 PRK04406 hypothetical protein; 57.6 80 0.0017 23.8 8.1 57 482-538 3-59 (75)
447 KOG0972 Huntingtin interacting 57.6 1.9E+02 0.0041 28.0 13.6 130 565-697 218-348 (384)
448 PF10164 DUF2367: Uncharacteri 57.2 4.2 9.2E-05 31.6 0.4 43 702-744 52-98 (98)
449 PRK03947 prefoldin subunit alp 57.2 1.3E+02 0.0028 26.0 13.6 94 482-575 5-137 (140)
450 KOG0883 Cyclophilin type, U bo 57.2 6.7 0.00015 38.9 1.9 52 702-754 43-94 (518)
451 COG0068 HypF Hydrogenase matur 57.0 6.3 0.00014 43.0 1.8 44 701-744 103-183 (750)
452 PF14311 DUF4379: Domain of un 57.0 6.4 0.00014 27.5 1.3 22 717-740 34-55 (55)
453 smart00834 CxxC_CXXC_SSSS Puta 56.8 3.1 6.8E-05 26.8 -0.3 26 717-744 11-36 (41)
454 smart00154 ZnF_AN1 AN1-like Zi 56.7 6.7 0.00014 25.0 1.2 23 702-724 1-25 (39)
455 PF10497 zf-4CXXC_R1: Zinc-fin 56.4 9.6 0.00021 30.9 2.4 39 703-741 22-68 (105)
456 COG1439 Predicted nucleic acid 56.3 3.3 7.1E-05 36.6 -0.3 22 722-744 142-163 (177)
457 PRK02119 hypothetical protein; 56.1 84 0.0018 23.5 7.9 55 484-538 3-57 (73)
458 smart00734 ZnF_Rad18 Rad18-lik 56.0 3.3 7.1E-05 23.6 -0.2 13 737-749 4-16 (26)
459 KOG3623 Homeobox transcription 55.7 5.6 0.00012 43.0 1.2 52 694-745 235-320 (1007)
460 PF00096 zf-C2H2: Zinc finger, 55.4 4.2 9.1E-05 22.1 0.1 10 737-746 3-12 (23)
461 PRK09841 cryptic autophosphory 55.4 3.6E+02 0.0077 31.2 15.6 145 23-205 253-397 (726)
462 PRK04179 rpl37e 50S ribosomal 55.3 3.4 7.4E-05 29.0 -0.3 23 719-741 17-39 (62)
463 PF13834 DUF4193: Domain of un 55.3 4.5 9.7E-05 31.7 0.3 27 699-725 70-98 (99)
464 TIGR00627 tfb4 transcription f 55.1 3.7 8E-05 40.0 -0.2 26 718-744 254-279 (279)
465 smart00659 RPOLCX RNA polymera 55.0 5.5 0.00012 26.2 0.6 23 716-744 7-29 (44)
466 PF10764 Gin: Inhibitor of sig 55.0 5.8 0.00012 26.4 0.7 24 701-725 1-24 (46)
467 PRK03681 hypA hydrogenase nick 54.9 2.9 6.3E-05 34.6 -0.8 26 718-743 69-96 (114)
468 COG4098 comFA Superfamily II D 54.7 5.6 0.00012 39.2 0.9 38 697-737 37-75 (441)
469 COG5627 MMS21 DNA repair prote 54.5 6.9 0.00015 35.9 1.4 53 699-751 189-245 (275)
470 PRK12496 hypothetical protein; 54.1 3.7 8E-05 36.6 -0.3 23 722-744 130-153 (164)
471 PF14073 Cep57_CLD: Centrosome 54.1 1.7E+02 0.0036 26.4 22.6 167 460-626 2-172 (178)
472 PF14319 Zn_Tnp_IS91: Transpos 53.9 5.1 0.00011 32.9 0.5 24 700-725 43-66 (111)
473 PF01485 IBR: IBR domain; Int 53.8 2.1 4.6E-05 31.0 -1.7 34 702-737 21-64 (64)
474 KOG2066 Vacuolar assembly/sort 53.4 20 0.00043 39.7 4.7 93 654-748 737-838 (846)
475 KOG3608 Zn finger proteins [Ge 53.1 6 0.00013 38.7 0.8 44 697-740 205-269 (467)
476 PF01529 zf-DHHC: DHHC palmito 52.9 3.7 8E-05 37.3 -0.6 33 721-754 50-82 (174)
477 COG0423 GRS1 Glycyl-tRNA synth 52.8 10 0.00022 40.0 2.4 52 699-754 88-147 (558)
478 COG5242 TFB4 RNA polymerase II 52.7 5.5 0.00012 36.2 0.5 25 720-745 261-285 (296)
479 PRK04325 hypothetical protein; 52.6 98 0.0021 23.3 7.8 53 486-538 5-57 (74)
480 PRK14890 putative Zn-ribbon RN 52.5 12 0.00026 26.2 1.9 38 701-741 9-55 (59)
481 PF13465 zf-H2C2_2: Zinc-finge 52.4 4.4 9.5E-05 23.1 -0.1 10 736-745 16-25 (26)
482 COG1996 RPC10 DNA-directed RNA 52.4 6.5 0.00014 26.4 0.7 27 713-744 8-34 (49)
483 PF11559 ADIP: Afadin- and alp 52.4 1.6E+02 0.0035 25.8 18.6 119 513-634 33-151 (151)
484 PRK04406 hypothetical protein; 52.3 1E+02 0.0022 23.3 8.2 56 81-136 3-58 (75)
485 PHA00733 hypothetical protein 51.9 9.7 0.00021 32.3 1.8 49 698-746 39-111 (128)
486 PF04805 Pox_E10: E10-like pro 51.8 3.8 8.2E-05 29.1 -0.5 18 737-754 18-45 (70)
487 PRK00736 hypothetical protein; 51.8 94 0.002 22.9 7.5 52 487-538 2-53 (68)
488 PF04728 LPP: Lipoprotein leuc 51.8 81 0.0017 22.1 8.1 53 468-520 2-54 (56)
489 PRK11519 tyrosine kinase; Prov 51.8 4.3E+02 0.0094 30.5 16.3 148 20-205 250-397 (719)
490 PF04012 PspA_IM30: PspA/IM30 51.7 2.2E+02 0.0047 27.0 22.2 169 459-630 13-186 (221)
491 smart00531 TFIIE Transcription 51.7 8.5 0.00019 33.7 1.5 36 713-748 101-137 (147)
492 KOG2041 WD40 repeat protein [G 51.3 5.6 0.00012 42.9 0.4 48 700-747 1132-1187(1189)
493 COG5574 PEX10 RING-finger-cont 51.3 10 0.00022 35.9 1.9 47 695-741 91-156 (271)
494 PRK02119 hypothetical protein; 51.2 1E+02 0.0022 23.1 7.9 54 83-136 3-56 (73)
495 KOG2682 NAD-dependent histone 51.2 9.5 0.00021 35.2 1.7 39 706-747 148-190 (314)
496 PF05377 FlaC_arch: Flagella a 51.1 82 0.0018 21.9 6.3 39 506-544 2-40 (55)
497 COG1379 PHP family phosphoeste 50.9 6.6 0.00014 38.1 0.7 27 720-747 247-278 (403)
498 TIGR02338 gimC_beta prefoldin, 50.9 1.4E+02 0.003 24.5 11.9 104 104-218 4-107 (110)
499 PRK03947 prefoldin subunit alp 50.8 1.6E+02 0.0036 25.3 14.0 97 538-634 5-140 (140)
500 COG4068 Uncharacterized protei 50.5 10 0.00022 26.2 1.3 16 733-748 7-22 (64)
No 1
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-38 Score=321.47 Aligned_cols=685 Identities=31% Similarity=0.438 Sum_probs=471.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004419 24 VEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYAD 103 (754)
Q Consensus 24 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 103 (754)
+...+..++.+....+......++.+....+.+-..+.. .-..+...-+.+..++..++.....+...+..+..
T Consensus 3 ~~~~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~------~~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~ 76 (698)
T KOG0978|consen 3 VEEPLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNR------VEEALTVLFDELAEENEKLQNLADHLQEKHATLSE 76 (698)
T ss_pred chhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777788888888888887777766666665 22235666777788888889999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcCccchhhhhhcCCCCCCcCccchhhcHHHH
Q 004419 104 QIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQEL 183 (754)
Q Consensus 104 ~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 183 (754)
.+..+.+.+.........++..++.+..++.........+..-+..+..... . ...+.......+.-.......+
T Consensus 77 ~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~--t---~~~~~~~~~~~~t~~~t~~~~l 151 (698)
T KOG0978|consen 77 QISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLN--T---YGNGNGSLSGTITVNSTELEEL 151 (698)
T ss_pred HHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--C---CCCcccccCcccccchhhhhhh
Confidence 9999999999999999999999999999999999998887644444332222 1 0000001111111112567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 184 KDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND-DKYV-HSSRLYNLVNDQLQHWNVEVERYKALTDSLLID 261 (754)
Q Consensus 184 ~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~~-~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 261 (754)
...++++.........++..++.....+..++..+...+.. .... .....+.-++ +...+..-..+
T Consensus 152 ~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~------------~NE~l~~~~~~ 219 (698)
T KOG0978|consen 152 RDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQ------------YNEELQRKTME 219 (698)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH------------hhhhcccccch
Confidence 78888888877888888888888888888887777776643 1110 0000000000 00000000000
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHHHHHH
Q 004419 262 RSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSG-RKDIKAEFRVMASALSKE 340 (754)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~~~~-~~~~~~~l~~~~~~l~~~ 340 (754)
...+ . ....+..+...+.....+++.+....+....+.+ +..+..++..+...+...
T Consensus 220 ~~e~-----------------~-----~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~ 277 (698)
T KOG0978|consen 220 SDEA-----------------I-----NSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEH 277 (698)
T ss_pred hhhh-----------------h-----ccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 0000 0 0011233333334444444444444444333333 455666777777777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHhcc
Q 004419 341 MGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKA-LIEKLQKDKLESQIMLDMYGQ 419 (754)
Q Consensus 341 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~-~l~~l~~~~~~l~~~~~~~~~ 419 (754)
...+......|.........++.....+...+......+..+.........++..+.. -+..+......++...+.+..
T Consensus 278 ~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (698)
T KOG0978|consen 278 EKLLKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDR 357 (698)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 7777666666777666777777666666655544444444444444444444444442 122222222233333332223
Q ss_pred CCCCchhHHHHHHHHHH-HHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhHh---hHH
Q 004419 420 EGRDPRDLMEIKESERR-AHSQAEVLKNALDEHSLELRVKAANEAEAACQQRL-SAAEAEIIELV-AKLDASER---DVM 493 (754)
Q Consensus 420 ~~~~~~~~~~l~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~el~~l~-~~~~~~~~---~~~ 493 (754)
......++.....++.. +...++.+..-......+++.....+. ..+..++ .....+...++ ...+.... ++.
T Consensus 358 e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~-e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~ 436 (698)
T KOG0978|consen 358 ESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAET-ESLLQRLKALDKEERSEIRKQALDDAERQIRQVE 436 (698)
T ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHH
Confidence 33333334444443333 444444444433332221111111111 1122222 22222333333 12223333 333
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004419 494 ELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQIN 573 (754)
Q Consensus 494 ~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~ 573 (754)
.+...+.........+..++..+...++++++.+..+..++...+...-.+..+...+.+.++.+..+...+..++..+.
T Consensus 437 ~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~ 516 (698)
T KOG0978|consen 437 ELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLK 516 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666667788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 004419 574 ALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKEL 653 (754)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l 653 (754)
.........+..++.+...+......+..++..+...++..+....++...+..+...+....+.+..++..+.+...++
T Consensus 517 ~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~el 596 (698)
T KOG0978|consen 517 ASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELEL 596 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHhccCCcccccccccccccceeccCCCcccHHHHHHHhcc
Q 004419 654 ENERNERKKLEEELMEVNNKVAELTSETGE-AAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI 732 (754)
Q Consensus 654 ~~~~~~~~~~~~e~~~~~~~l~~l~~~~~~-~~~~~l~~e~~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~ 732 (754)
........++++++..++.++.+++....+ .....+.+++..++..++||+|+.+|++.|+++|||.||+.|+.+++..
T Consensus 597 e~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et 676 (698)
T KOG0978|consen 597 EIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYET 676 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHH
Confidence 999999999999999999999999988775 5688899999999999999999999999999999999999999999999
Q ss_pred CCCCccccCcCcCCCCCcccCC
Q 004419 733 RHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 733 ~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
|+++||.|+.+|+++||+||||
T Consensus 677 RqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 677 RQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred hcCCCCCCCCCCCcccccccCC
Confidence 9999999999999999999997
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.84 E-value=1.1e-11 Score=144.78 Aligned_cols=118 Identities=16% Similarity=0.165 Sum_probs=64.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004419 23 YVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYA 102 (754)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 102 (754)
++...+..+...++..+..+...+.....+...+.....+. +..+..+...+++++..+.++..+......++..+.
T Consensus 894 e~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~---~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~ 970 (1930)
T KOG0161|consen 894 ELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKL---EQEVQELKEQLEELELTLQKLELEKNAAENKLKNLE 970 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555444444444444432 134444555566666666666666666666666666
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004419 103 DQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSL 143 (754)
Q Consensus 103 ~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l 143 (754)
.++..+++.+.++..+...++..+..+.+.+.....+...+
T Consensus 971 ~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l 1011 (1930)
T KOG0161|consen 971 EEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666555555554444
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.83 E-value=3.3e-11 Score=140.74 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=32.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004419 178 MDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND 224 (754)
Q Consensus 178 ~~~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~~ 224 (754)
+....++..+..+...+...+.+...+.+....+...+..+...+..
T Consensus 985 kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~ 1031 (1930)
T KOG0161|consen 985 KEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLER 1031 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666677777777777777777777777777776665
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=3.8e-13 Score=160.53 Aligned_cols=233 Identities=13% Similarity=0.118 Sum_probs=119.0
Q ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 324 KDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKL 403 (754)
Q Consensus 324 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l 403 (754)
..+..++...+..+......+...+..+......+..+...+..+.... ...++.+...+......+..+...+..+
T Consensus 694 ~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~---~~eip~l~~~l~~le~~l~~~~~~le~~ 770 (1311)
T TIGR00606 694 QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK---EKEIPELRNKLQKVNRDIQRLKNDIEEQ 770 (1311)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---HhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554555555555566666666666655555554332 2346666666666666677777667777
Q ss_pred HhhHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 404 QKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVA 483 (754)
Q Consensus 404 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~el~~l~~ 483 (754)
...+..+...++.+.........+..+..++..+..++..+...+........+..+...+..+...+..+...+..+..
T Consensus 771 ~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~ 850 (1311)
T TIGR00606 771 ETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRK 850 (1311)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666555555566677777777777777777776654332112233333333333344444333333344
Q ss_pred HHHHhHhhHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHHHHH
Q 004419 484 KLDASERDVMELEEAMKSKD---REAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLL 559 (754)
Q Consensus 484 ~~~~~~~~~~~l~~~l~~~~---~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~~~~~~~~~~l~ 559 (754)
.......++..+...+..+. ..+..--.....+...+.++...+..+...+..+...+..+..++..+...+..+.
T Consensus 851 e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 851 LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 44444444444422222211 11111112333344444444444445555555555555555444444444443333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.79 E-value=5e-11 Score=144.81 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcch
Q 004419 426 DLMEIKESERRAHSQAEVLKNALDE 450 (754)
Q Consensus 426 ~~~~l~~~~~~~~~~l~~l~~~l~~ 450 (754)
.+..+...+..+...+..+...+..
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~~~ 699 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRR 699 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655543
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.78 E-value=1.3e-10 Score=137.30 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=53.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc---ChhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 004419 24 VEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKL---SAEDAIIQ-----LSKIDDMMKEEAKNLHEVMEIIH 95 (754)
Q Consensus 24 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~-----l~~~~~~l~~~~~~l~~~~~~l~ 95 (754)
-......++......+.++.+.+..+...++.|........ .....+.. +...+..+...+..+...+..+.
T Consensus 173 r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 252 (1163)
T COG1196 173 RKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLE 252 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666666666666665555544311 11111111 12222333333444444444444
Q ss_pred HhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004419 96 LKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSL 143 (754)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l 143 (754)
..+..+...+......+..+...+..+...+..++..+......+..+
T Consensus 253 ~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l 300 (1163)
T COG1196 253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEEL 300 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433333333333333
No 7
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=8.3e-11 Score=124.73 Aligned_cols=244 Identities=14% Similarity=0.102 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhh
Q 004419 35 ARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLK-HKEYADQIENYISSHS 113 (754)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~-~~~~~~~l~~~~~~~~ 113 (754)
.-..+.++..+++|+... .........+....+.+..+.........++..++.++..+... ..++...+..++.++.
T Consensus 226 dle~l~R~~ia~eY~~~~-~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~ 304 (1174)
T KOG0933|consen 226 DLERLSRICIAYEYLQAE-EKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLD 304 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHH
Confidence 445667777777777663 33333333333344444445455555555555555555554442 2233334444555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcCccchhhhhhcCCCCCCcCccchhhcHHHHHHHHHHHHHH
Q 004419 114 VDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKIL 193 (754)
Q Consensus 114 ~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 193 (754)
.+...+......+......|.........++ ..+.+....+......
T Consensus 305 ~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~---------------------------------~~i~e~~~~l~~k~~~ 351 (1174)
T KOG0933|consen 305 SLQNEITREETSLNLKKETLNGEEEKLEEIR---------------------------------KNIEEDRKKLKEKEKA 351 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---------------------------------HhHHHHHHHHHHHHHH
Confidence 5555555555555544444444444444444 2333333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 194 AADRLSEVEEAQQDNINLSKQLENLQNELND-DKYVHSSRL-YNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKE 271 (754)
Q Consensus 194 ~~~~~~e~~~l~~~~~~~~~el~~l~~~l~~-~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ 271 (754)
+.........+.........-+...+..+.. ......... -..+..++...+..+..+...+......+..+...+..
T Consensus 352 ~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~ 431 (1174)
T KOG0933|consen 352 MAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKL 431 (1174)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444443 222222222 34567777777777777777777777777777776665
Q ss_pred HHHHhhhHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004419 272 INVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSG 322 (754)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~~~~~~~ 322 (754)
....... +..........+..+....+.++..+..+....+
T Consensus 432 ~e~e~~t----------~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~ 472 (1174)
T KOG0933|consen 432 REGELAT----------ASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIG 472 (1174)
T ss_pred hhhHhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 5444422 3333344444566666677777777777655544
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.74 E-value=1.1e-09 Score=133.64 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004419 30 SRHSSARELMKFIEEVIDAQRVKTKSIAEAFH 61 (754)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 61 (754)
.+.......+.++.+.+..+...+..+.....
T Consensus 172 ~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~ 203 (1179)
T TIGR02168 172 ERRKETERKLERTRENLDRLEDILNELERQLK 203 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554444444
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.74 E-value=2e-09 Score=131.43 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=12.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhH
Q 004419 27 ALASRHSSARELMKFIEEVIDAQRVKTK 54 (754)
Q Consensus 27 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (754)
.....+.+....+..+...+..+.....
T Consensus 176 ~t~~nL~r~~d~l~el~~ql~~L~~q~~ 203 (1179)
T TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLK 203 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555544444444333
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.73 E-value=4.4e-09 Score=127.93 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhcch
Q 004419 432 ESERRAHSQAEVLKNALDE 450 (754)
Q Consensus 432 ~~~~~~~~~l~~l~~~l~~ 450 (754)
..+..+..++..+...+..
T Consensus 674 ~~l~~l~~~l~~l~~~l~~ 692 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSS 692 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=8.1e-09 Score=123.87 Aligned_cols=104 Identities=12% Similarity=0.166 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH--HHHHHHHHH------------HHHH
Q 004419 597 ALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDM--RKELENERN------------ERKK 662 (754)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~l~~~~~------------~~~~ 662 (754)
+..+...+......+..+...+..+...+..+...+..+......+..++.-+ ...+..+.. ....
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~ 1051 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQ 1051 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 33333444444444444444444455555555555554444444444444333 222222222 2345
Q ss_pred HHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHhccCCcc
Q 004419 663 LEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKAIL 700 (754)
Q Consensus 663 ~~~e~~~~~~~l~~l~~~~~~--~~~~~l~~e~~~~~~~~ 700 (754)
+..+...+...+..+...+.. |.+..++.++..+...+
T Consensus 1052 ~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1052 MKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777776665 66666666666555544
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=99.67 E-value=1.7e-08 Score=117.88 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 185 DSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQN 220 (754)
Q Consensus 185 ~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~ 220 (754)
..+..+...+..+..++..+...+..+..++..+..
T Consensus 265 ~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~ 300 (880)
T PRK02224 265 ETIAETEREREELAEEVRDLRERLEELEEERDDLLA 300 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.65 E-value=3.5e-08 Score=116.92 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 181 QELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQN 220 (754)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~ 220 (754)
..+...+..+.............+......+...+.....
T Consensus 298 ~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1163)
T COG1196 298 EELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 14
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.63 E-value=1.9e-08 Score=109.42 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004419 180 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELN 223 (754)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~ 223 (754)
.+.+..++..++..+......+..++..+......+..+...|.
T Consensus 123 ~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 123 RERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555555555555555555555553
No 15
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.61 E-value=7.3e-08 Score=111.30 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004419 622 EKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSE 680 (754)
Q Consensus 622 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~~~ 680 (754)
...+.++...+..+...+..++..+..+..++......+..++.+...|+.+...+...
T Consensus 1242 ~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1242 LEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444555555555555555554444
No 16
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=3.8e-08 Score=107.01 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 239 DQLQHWNVEVERYKALTDSLLIDRSLV 265 (754)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~~l~~~~~~l 265 (754)
..+..+..++.....++...+.++..+
T Consensus 486 kel~~~~~~~n~~~~e~~vaesel~~L 512 (1293)
T KOG0996|consen 486 KELMPLLKQVNEARSELDVAESELDIL 512 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444344443333
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=99.60 E-value=1.1e-07 Score=111.40 Aligned_cols=13 Identities=8% Similarity=-0.386 Sum_probs=7.6
Q ss_pred ccccCcCcCCCCC
Q 004419 737 CPGCGTAFGQSDV 749 (754)
Q Consensus 737 Cp~C~~~~~~~d~ 749 (754)
++..-.||+.-|.
T Consensus 815 ~lilDEp~~~lD~ 827 (880)
T PRK03918 815 LLILDEPTPFLDE 827 (880)
T ss_pred eEEEeCCCcccCH
Confidence 3346677776654
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.59 E-value=5.2e-08 Score=106.14 Aligned_cols=100 Identities=20% Similarity=0.221 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcCccchhhhhhcCCCCCCcCccchhhcHH
Q 004419 102 ADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQ 181 (754)
Q Consensus 102 ~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (754)
...+..+.+.+.....+...+...+..++.+| .....+..+......+.+. .... ..+.
T Consensus 52 ~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e-------------~e~l-------~~ld 110 (775)
T PF10174_consen 52 AAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYE-------------FESL-------QELD 110 (775)
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccc-------------cchh-------hhhh
Confidence 34444444555444555555555555555555 5555555544222221111 1110 1134
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 182 ELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNEL 222 (754)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l 222 (754)
.....+..+....+....++..+...+..++..+..++..+
T Consensus 111 ~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l 151 (775)
T PF10174_consen 111 KAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTL 151 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555444443
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.1e-16 Score=129.89 Aligned_cols=55 Identities=35% Similarity=0.775 Sum_probs=50.9
Q ss_pred ccccccccccccc--ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 699 ILKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 699 ~~~C~iC~~~~~~--~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
.+.||||++.|.. ||.+.|||+||..||...++. .++||+||..++..++++|||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhheeccC
Confidence 3799999999965 678999999999999999995 889999999999999999997
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=99.56 E-value=2.2e-07 Score=108.94 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 004419 429 EIKESERRAHSQAEVLKNAL 448 (754)
Q Consensus 429 ~l~~~~~~~~~~l~~l~~~l 448 (754)
.+..++..+..++..+...+
T Consensus 456 ~~~~ei~~l~~~~~~l~~~~ 475 (880)
T PRK03918 456 EYTAELKRIEKELKEIEEKE 475 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544443
No 21
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.54 E-value=2.9e-07 Score=106.60 Aligned_cols=179 Identities=16% Similarity=0.176 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 004419 73 LSKIDDMMKEEAKNLHEVMEIIHLKHKEYA----DQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKD 148 (754)
Q Consensus 73 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~----~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~~~~~ 148 (754)
+...+..|...+..+...+......+..+. ..+..+...+..+...+..+...+......+..+..++..|...+.
T Consensus 803 ~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~ 882 (1822)
T KOG4674|consen 803 CESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLK 882 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444433333222 3333444444444444444444444444444444444444432222
Q ss_pred hhcCcCccchhhhhhcCCCCCCcCccchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 004419 149 IASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYV 228 (754)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~~~~~~ 228 (754)
... .+....+....... .......+.....++..++..+......+..++..+.....-+......+++..
T Consensus 883 ~~~------~~~~~l~~~~~~~d-~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~-- 953 (1822)
T KOG4674|consen 883 SAK------TQLLNLDSKSSNED-ATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR-- 953 (1822)
T ss_pred HhH------HHHhhccccchhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 110 11111111000000 000012233334444444555555555555555555555555555555444311
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 229 HSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVL 266 (754)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~ 266 (754)
..+...+..+...+..+...+..+..++..+.
T Consensus 954 ------~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~ 985 (1822)
T KOG4674|consen 954 ------LELEAKIESLHKKITSLEEELSELEKEIENLR 985 (1822)
T ss_pred ------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333444444444444444444444444443
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.4e-07 Score=100.97 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=25.2
Q ss_pred ccCCCCcCchHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 004419 12 IESSSKDGILQYVEEA-----LASRHSSARELMKFIEEVIDAQRVKTKSIAEA 59 (754)
Q Consensus 12 ~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 59 (754)
+..-+-+|-++||+-= +...++...+.+..+.+.+......+.-....
T Consensus 244 ~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~e 296 (1293)
T KOG0996|consen 244 AQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKE 296 (1293)
T ss_pred CCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3334457788888762 33334445555555555555555544433333
No 23
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.44 E-value=5.2e-14 Score=122.61 Aligned_cols=56 Identities=30% Similarity=0.724 Sum_probs=50.2
Q ss_pred CcccccccccccccceeccCCCcccHHHHHHHhcc---------------CCCCccccCcCcCCCCCcccC
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI---------------RHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~---------------~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
..+.|+||++.+.+||+++|||+||..|+..|+.. ....||.|+.+++..++.++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 45899999999999999999999999999999742 235799999999999999988
No 24
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.42 E-value=1.3e-13 Score=89.63 Aligned_cols=39 Identities=36% Similarity=0.869 Sum_probs=32.4
Q ss_pred ccccccccccceeccCCCcccHHHHHHHhccCCC---Ccccc
Q 004419 702 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHR---KCPGC 740 (754)
Q Consensus 702 C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~---~Cp~C 740 (754)
||||.+.|++||+++|||+||..|+.+++..... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999987544 59988
No 25
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.36 E-value=3.5e-13 Score=99.30 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=49.3
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
+.||||++.+.+||+++|||+||..|+..|+.. ..+||.|+.+++..|+.+++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCH
Confidence 689999999999999999999999999999986 77899999999999988764
No 26
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.36 E-value=1.1e-13 Score=127.52 Aligned_cols=55 Identities=38% Similarity=0.881 Sum_probs=51.6
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
.++|-||++-|+-|+++||||+||+-||..++.+ .+.||.|+.+|..++++.++|
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhH
Confidence 3899999999999999999999999999999996 888999999999999998774
No 27
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.35 E-value=1e-13 Score=155.71 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 004419 178 MDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSS--RLYNLVNDQLQHWNVEVERYKALT 255 (754)
Q Consensus 178 ~~~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~ 255 (754)
.....+..++..+...+......+..+......+..++..++..+......... ..+..+..++..++..+++-....
T Consensus 208 ~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k 287 (859)
T PF01576_consen 208 EQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAK 287 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 344555566666666666666666666666666666677666666652221111 124444555555555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004419 256 DSLLIDRSLVLRREKEINVRA 276 (754)
Q Consensus 256 ~~l~~~~~~l~~~~~~~~~~~ 276 (754)
..+...+..+...+..|..++
T Consensus 288 ~~l~~qlsk~~~El~~~k~K~ 308 (859)
T PF01576_consen 288 SELERQLSKLNAELEQWKKKY 308 (859)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 444444444444444444333
No 28
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.35 E-value=1.1e-13 Score=155.47 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004419 180 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND 224 (754)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~~ 224 (754)
...+..++.+++..+.........+...+..+..++..+...+..
T Consensus 238 k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqlee 282 (859)
T PF01576_consen 238 KSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEE 282 (859)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555555555555556666666666666666666554
No 29
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2e-06 Score=91.16 Aligned_cols=226 Identities=18% Similarity=0.207 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 508 AYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAE 587 (754)
Q Consensus 508 ~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~ 587 (754)
.+...+......+..+-.......+.+.+++..+..+..++.........+..+..........+......+...+..+.
T Consensus 437 ~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~ 516 (698)
T KOG0978|consen 437 ELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLK 516 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444556677778888888999999999999999988888888888777777777777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 588 EQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEEL 667 (754)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~ 667 (754)
.....+...+..++.....+......+..++..+...+.........+......++..+......+..+...+.....++
T Consensus 517 ~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~el 596 (698)
T KOG0978|consen 517 ASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELEL 596 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777777777777777777776666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhccCCccccccc-------ccccccceeccCCCcccHHHHHHHhccCCCCccc-
Q 004419 668 MEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVC-------FDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPG- 739 (754)
Q Consensus 668 ~~~~~~l~~l~~~~~~~~~~~l~~e~~~~~~~~~C~iC-------~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~- 739 (754)
........++...+ ..+...+...+..-.=+-| ...|+ |-..|+.|..+|-.....+|.|
T Consensus 597 e~~~~k~~rleEE~-----e~L~~kle~~k~~~~~~s~d~~L~EElk~yK-------~~LkCs~Cn~R~Kd~vI~kC~H~ 664 (698)
T KOG0978|consen 597 EIEKFKRKRLEEEL-----ERLKRKLERLKKEESGASADEVLAEELKEYK-------ELLKCSVCNTRWKDAVITKCGHV 664 (698)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHhccccccccccHHHHHHHHHHH-------hceeCCCccCchhhHHHHhcchH
Confidence 65555555544443 3444444444433221111 12233 4456889998888877788888
Q ss_pred -cCcCcC
Q 004419 740 -CGTAFG 745 (754)
Q Consensus 740 -C~~~~~ 745 (754)
|-.|+.
T Consensus 665 FC~~Cvq 671 (698)
T KOG0978|consen 665 FCEECVQ 671 (698)
T ss_pred HHHHHHH
Confidence 544443
No 30
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=2.5e-06 Score=91.63 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004419 181 QELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND 224 (754)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~~ 224 (754)
.-++.++...+..+......+....-.+..+..++.....++..
T Consensus 395 ~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t 438 (1174)
T KOG0933|consen 395 KTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELAT 438 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 44555666666666666666666666666666666665555544
No 31
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=6.6e-13 Score=121.24 Aligned_cols=55 Identities=31% Similarity=0.652 Sum_probs=49.3
Q ss_pred CcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
....|++|+++..+|..+||||+||-+||..|... ...||.||..|.++++..++
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcceeeec
Confidence 44799999999999999999999999999999986 44599999999999987654
No 32
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.31 E-value=7.9e-13 Score=131.19 Aligned_cols=61 Identities=33% Similarity=0.602 Sum_probs=53.9
Q ss_pred HhccCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 693 IKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 693 ~~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
+..++..+.|+||++.|.+||+++|||+||..|+..|+.. ...||.|+.++...+++++|+
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~ 80 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWL 80 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchH
Confidence 3456677999999999999999999999999999999985 568999999999888887763
No 33
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.30 E-value=1.3e-12 Score=84.45 Aligned_cols=38 Identities=45% Similarity=1.096 Sum_probs=33.8
Q ss_pred ccccccccccc-eeccCCCcccHHHHHHHhccCCCCcccc
Q 004419 702 CGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGC 740 (754)
Q Consensus 702 C~iC~~~~~~~-~~~~CgH~fC~~C~~~~~~~~~~~Cp~C 740 (754)
|+||++.+.+| ++++|||+||..|+..++.. ..+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68899999999999999997 7899998
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-12 Score=117.75 Aligned_cols=58 Identities=33% Similarity=0.588 Sum_probs=49.6
Q ss_pred hccCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 694 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
..+...+.|-||...|+-|+.++|||+||+-||.+++.+ +..||.||.+|-..-++..
T Consensus 20 ~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~ 77 (391)
T COG5432 20 KGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGS 77 (391)
T ss_pred hcchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccc
Confidence 345566899999999999999999999999999999985 8899999988876555443
No 35
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2e-12 Score=114.63 Aligned_cols=56 Identities=34% Similarity=0.768 Sum_probs=51.5
Q ss_pred CcccccccccccccceeccCCCcccHHHHHHHhccCCC--CccccCcCcCCCCCcccC
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHR--KCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~--~Cp~C~~~~~~~d~~~~~ 753 (754)
..+.|.||.+.-++||++.|||+||-.|+..|+..+.. .||+|+..++...|.+||
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 45899999999999999999999999999999987544 489999999999999998
No 36
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.25 E-value=3.5e-12 Score=87.95 Aligned_cols=46 Identities=41% Similarity=1.050 Sum_probs=40.9
Q ss_pred ccccccccccccceeccCCCc-ccHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
..|+||++.+.+++++||||+ ||..|..++.. ...+||.||.++..
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 689999999999999999999 99999999998 67889999999863
No 37
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.25 E-value=3e-12 Score=96.08 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=46.0
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
.+.||||+..|.+||+++|||+||..||..|+..+...||.|+.+++..++.+++
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 4899999999999999999999999999999998788999999999999988764
No 38
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=7.8e-06 Score=87.62 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 240 QLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLK 313 (754)
Q Consensus 240 ~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~ 313 (754)
++..+..-+.+.......++.++..+...+......+..+...+.. ...++.++...+..+..+++.+...
T Consensus 398 ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e---~~~r~~~~~~~~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 398 EIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINE---TKGRMEEFDAENTELKRELDELQDK 468 (1200)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443333333333333322 4444555555555555555555544
No 39
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.24 E-value=1.7e-12 Score=89.02 Aligned_cols=54 Identities=35% Similarity=0.795 Sum_probs=29.5
Q ss_pred cCCcccccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 696 CKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
++..+.|++|++.++.||.+ .|.|+||+.|+...+.. .||+|+.|.-..|++-+
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhh
Confidence 34458999999999999865 89999999999887553 59999999999998654
No 40
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.8e-12 Score=127.00 Aligned_cols=56 Identities=32% Similarity=0.708 Sum_probs=52.1
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccC----CCCccccCcCcCCCCCcccCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR----HRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~----~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
...||||+..+.-|+.+.|||+||..||..+|.+. +.+||.|+..|..+||+++|+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 58999999999999999999999999999999874 567999999999999999986
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.21 E-value=3.4e-05 Score=91.55 Aligned_cols=58 Identities=10% Similarity=0.194 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 619 ADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAE 676 (754)
Q Consensus 619 ~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~ 676 (754)
.++...+.........++..+.....++..+...+......+..+...+..++..+..
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~ 1120 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCA 1120 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555556566665555566666666665554443
No 42
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.14 E-value=1.1e-11 Score=82.83 Aligned_cols=40 Identities=33% Similarity=0.810 Sum_probs=34.7
Q ss_pred cccccccccc---cceeccCCCcccHHHHHHHhccCCCCccccC
Q 004419 701 KCGVCFDRPK---EVVITKCFHLFCNPCIQRNLEIRHRKCPGCG 741 (754)
Q Consensus 701 ~C~iC~~~~~---~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~ 741 (754)
.|+||++.|. .++.++|||+||..|+..|+.. ..+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 6999999984 4778899999999999999996 67999997
No 43
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.13 E-value=3.3e-11 Score=79.47 Aligned_cols=39 Identities=36% Similarity=0.906 Sum_probs=36.3
Q ss_pred ccccccccccce-eccCCCcccHHHHHHHhc-cCCCCcccc
Q 004419 702 CGVCFDRPKEVV-ITKCFHLFCNPCIQRNLE-IRHRKCPGC 740 (754)
Q Consensus 702 C~iC~~~~~~~~-~~~CgH~fC~~C~~~~~~-~~~~~Cp~C 740 (754)
|+||++.|.+++ +++|||.||..|+..|+. ....+||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999999 567789998
No 44
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.11 E-value=2.6e-11 Score=78.34 Aligned_cols=36 Identities=31% Similarity=0.805 Sum_probs=23.2
Q ss_pred cccccccccc----ceeccCCCcccHHHHHHHhccC---CCCcc
Q 004419 702 CGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIR---HRKCP 738 (754)
Q Consensus 702 C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~---~~~Cp 738 (754)
||||.+ |.+ |+.++|||+||..|+..++... ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 988 9999999999999999999853 45688
No 45
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.09 E-value=6.1e-11 Score=109.24 Aligned_cols=48 Identities=27% Similarity=0.738 Sum_probs=40.8
Q ss_pred Cccccccccccccc--------ceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 698 AILKCGVCFDRPKE--------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 698 ~~~~C~iC~~~~~~--------~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
....|+||++.+.+ +++++|||.||..|+..|.. ....||+||.+|..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEeeE
Confidence 34799999998764 35678999999999999988 57789999999875
No 46
>PHA02926 zinc finger-like protein; Provisional
Probab=99.09 E-value=6.1e-11 Score=103.95 Aligned_cols=50 Identities=30% Similarity=0.735 Sum_probs=39.8
Q ss_pred Cccccccccccccc---------ceeccCCCcccHHHHHHHhccC-----CCCccccCcCcCCC
Q 004419 698 AILKCGVCFDRPKE---------VVITKCFHLFCNPCIQRNLEIR-----HRKCPGCGTAFGQS 747 (754)
Q Consensus 698 ~~~~C~iC~~~~~~---------~~~~~CgH~fC~~C~~~~~~~~-----~~~Cp~C~~~~~~~ 747 (754)
....|+||++.... +++.+|||+||..||..|...+ .+.||.||.+|..=
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 44899999987421 5677999999999999999754 24599999998753
No 47
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.07 E-value=8.2e-11 Score=78.22 Aligned_cols=41 Identities=32% Similarity=0.916 Sum_probs=35.5
Q ss_pred ccccccccc---ccceeccCCCcccHHHHHHHhccCCCCccccCc
Q 004419 701 KCGVCFDRP---KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 701 ~C~iC~~~~---~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~ 742 (754)
.|++|+..| ..+++++|||+||..|+..+. .....||+|+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999999 348899999999999999998 45778999984
No 48
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.02 E-value=0.0001 Score=81.30 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=17.2
Q ss_pred cceeccCCC-cccHHHHHHHhccCCCCccc-cCcCcC
Q 004419 711 EVVITKCFH-LFCNPCIQRNLEIRHRKCPG-CGTAFG 745 (754)
Q Consensus 711 ~~~~~~CgH-~fC~~C~~~~~~~~~~~Cp~-C~~~~~ 745 (754)
++-.+.=|. .|-.-|+--.+- ....||+ |---|+
T Consensus 986 d~~gLSGGERSFsTv~lllsLW-~~me~Pfr~LDEFD 1021 (1074)
T KOG0250|consen 986 DTRGLSGGERSFSTVCLLLSLW-EVMECPFRALDEFD 1021 (1074)
T ss_pred cccccCcccchHHHHHHHHHHh-HhhcCchhhhhHHH
Confidence 333344443 576666554332 2446998 544443
No 49
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.98 E-value=3.4e-10 Score=77.18 Aligned_cols=44 Identities=34% Similarity=0.877 Sum_probs=37.7
Q ss_pred cccccccccccceecc-CCCcccHHHHHHHhccCCCCccccCcCc
Q 004419 701 KCGVCFDRPKEVVITK-CFHLFCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~~-CgH~fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
.|+||++.+.+++.++ |||.||..|+..|.......||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999997666665 9999999999999987677899999764
No 50
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.2e-10 Score=75.51 Aligned_cols=47 Identities=28% Similarity=0.706 Sum_probs=42.8
Q ss_pred ccccccccccccceeccCCCcc-cHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~f-C~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
-.|.||++...+.|+..|||+. |+.|..+.+......||.||.++..
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 4799999999999999999997 9999999988777889999999753
No 51
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3e-10 Score=102.58 Aligned_cols=51 Identities=29% Similarity=0.580 Sum_probs=45.7
Q ss_pred cccccccccccccceeccCCCcccHHHHHH-HhccCCCCccccCcCcCCCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQR-NLEIRHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~-~~~~~~~~Cp~C~~~~~~~d~ 749 (754)
.+.|+||++....|+.++|||+||-.|+.. |.....-+||.||....+.++
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 368999999999999999999999999999 766556679999999988876
No 52
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.92 E-value=6.7e-10 Score=73.00 Aligned_cols=39 Identities=36% Similarity=0.960 Sum_probs=36.1
Q ss_pred ccccccccccceeccCCCcccHHHHHHHhccCCCCcccc
Q 004419 702 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740 (754)
Q Consensus 702 C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C 740 (754)
|+||++....+++++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789998
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.92 E-value=6.6e-06 Score=78.58 Aligned_cols=198 Identities=17% Similarity=0.246 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 004419 470 RLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESV 549 (754)
Q Consensus 470 ~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~~ 549 (754)
.......++..+..++..+...+......+......+..+..........+..+..........+..++..+........
T Consensus 30 ~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~e 109 (237)
T PF00261_consen 30 RAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAE 109 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333333344444444444444444444444444444444444444444444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004419 550 KTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLK 629 (754)
Q Consensus 550 ~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 629 (754)
.+...+......+..+...+......+......+..++..+..+...+..+...-.........+...+..+...+....
T Consensus 110 e~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE 189 (237)
T PF00261_consen 110 EAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAE 189 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444333344444444444444444444444
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 630 SAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEEL 667 (754)
Q Consensus 630 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~ 667 (754)
......+..+..+...+..+...+......+..+..++
T Consensus 190 ~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 190 NRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433333333333333
No 54
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.85 E-value=0.00086 Score=80.30 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004419 185 DSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELN 223 (754)
Q Consensus 185 ~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~ 223 (754)
..+..++..+..+...+..+......+...+..+...+.
T Consensus 352 ~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~ 390 (1201)
T PF12128_consen 352 DQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLE 390 (1201)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555444
No 55
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.84 E-value=0.00029 Score=74.03 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.0
Q ss_pred CCcccHHHHHHHhccCCCCccccCcC
Q 004419 718 FHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 718 gH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
-|--|.+|+.+.+...+.+-|.|+.+
T Consensus 632 e~~elvtyL~sqi~~kqtkqpklgrr 657 (1265)
T KOG0976|consen 632 EHPELVTYLPSQIDAKQTKQPKLGRR 657 (1265)
T ss_pred ccHHHHhhchhhhchhcccCCccCCh
Confidence 46779999999888888899999865
No 56
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.80 E-value=0.00055 Score=75.01 Aligned_cols=68 Identities=12% Similarity=0.234 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 77 DDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLK 144 (754)
Q Consensus 77 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~ 144 (754)
+..+...+..++..+..+...+...+..+......+.....+|..|+.....+..-+.++...+..++
T Consensus 1227 i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344555555555555555555555556666666655566666666666666666666666655553
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.78 E-value=5.4e-06 Score=76.41 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=10.1
Q ss_pred ccCCCCccccCcCc
Q 004419 731 EIRHRKCPGCGTAF 744 (754)
Q Consensus 731 ~~~~~~Cp~C~~~~ 744 (754)
.....+||+||.-.
T Consensus 218 ~d~iv~CP~CgRIL 231 (239)
T COG1579 218 KDEIVFCPYCGRIL 231 (239)
T ss_pred CCCCccCCccchHH
Confidence 33577899998654
No 58
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.73 E-value=3.2e-05 Score=73.92 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=30.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004419 602 SEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAEL 677 (754)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l 677 (754)
..+..+...+..+...+..+.............++..+..+...+.++..........+..++..+..+...|...
T Consensus 141 ~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 141 SKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333444444444444444444444444444444444444444333
No 59
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.66 E-value=0.0009 Score=69.71 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=22.2
Q ss_pred hhhhhhcCcccCCCCcCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004419 3 LCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRV 51 (754)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 51 (754)
+|+||-..-.-+..++..+++-.+..+.-.-..-..+.++..++..++.
T Consensus 156 lCNlLKeT~~rsaEK~~~yE~EREET~qly~~l~~niekMi~aFEeLR~ 204 (786)
T PF05483_consen 156 LCNLLKETCQRSAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEELRV 204 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555532223333344444554444444444444444455555555444
No 60
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.8e-09 Score=94.52 Aligned_cols=49 Identities=24% Similarity=0.619 Sum_probs=45.6
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
-.|+||+.....||.++|||.||+.||.....+....||+||.+|+..-
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 5799999999999999999999999999999988888999999999864
No 61
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.9e-09 Score=99.33 Aligned_cols=53 Identities=26% Similarity=0.654 Sum_probs=46.1
Q ss_pred ccCCcccccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 695 DCKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
.+...+.|+||...++.+.++ .|+|.||+.||...+...+..||+||....+.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 344558999999999988777 69999999999999998899999999887764
No 62
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.61 E-value=1.1e-08 Score=87.12 Aligned_cols=47 Identities=32% Similarity=0.703 Sum_probs=41.7
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
.+.|.||...|..||++.|||.||..|.-+... ...+|.+|+.....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhhcc
Confidence 368999999999999999999999999998887 47789999976554
No 63
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.57 E-value=0.0022 Score=69.07 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004419 183 LKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNE 221 (754)
Q Consensus 183 l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~ 221 (754)
+..+++..+..+.....++.....++..+..++......
T Consensus 114 ~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~ 152 (522)
T PF05701_consen 114 WKAELESAREQYASAVAELDSVKQELEKLRQELASALDA 152 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666666666655443
No 64
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=9.5e-08 Score=90.21 Aligned_cols=45 Identities=27% Similarity=0.595 Sum_probs=39.3
Q ss_pred Ccccccccccc-cc------------cceeccCCCcccHHHHHHHhccCCCCccccCcC
Q 004419 698 AILKCGVCFDR-PK------------EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 698 ~~~~C~iC~~~-~~------------~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
....|.|||+. |. .|..+||||.|-.+|+..|.. |+-.||.||.|
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p 343 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRP 343 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCc
Confidence 34699999988 32 268999999999999999999 78899999998
No 65
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.53 E-value=5.7e-08 Score=72.59 Aligned_cols=41 Identities=29% Similarity=0.707 Sum_probs=32.7
Q ss_pred cccccccccccc-------------ceeccCCCcccHHHHHHHhccCCCCccccC
Q 004419 700 LKCGVCFDRPKE-------------VVITKCFHLFCNPCIQRNLEIRHRKCPGCG 741 (754)
Q Consensus 700 ~~C~iC~~~~~~-------------~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~ 741 (754)
-.|+||+..|.+ .+..+|||.|...||..|+.. ...||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 359999998832 234489999999999999985 56999997
No 66
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.53 E-value=0.0033 Score=68.96 Aligned_cols=21 Identities=5% Similarity=0.115 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004419 241 LQHWNVEVERYKALTDSLLID 261 (754)
Q Consensus 241 ~~~l~~~~~~~~~~~~~l~~~ 261 (754)
+..+...+..+...+..+...
T Consensus 107 ~~~~~~~l~~~e~~~~~i~~~ 127 (569)
T PRK04778 107 INEIESLLDLIEEDIEQILEE 127 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 67
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.50 E-value=0.0081 Score=72.19 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 180 LQELKDSVEEAKILAADRLSEVEE 203 (754)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~e~~~ 203 (754)
+..+...+..+.....++..++..
T Consensus 361 ~~~l~~~~~~Lt~~~~di~~ky~~ 384 (1201)
T PF12128_consen 361 LENLQEQLDLLTSKHQDIESKYNK 384 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444333333
No 68
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.45 E-value=0.0033 Score=65.51 Aligned_cols=7 Identities=14% Similarity=0.263 Sum_probs=4.3
Q ss_pred ccccccc
Q 004419 700 LKCGVCF 706 (754)
Q Consensus 700 ~~C~iC~ 706 (754)
..|+.|-
T Consensus 501 ~~~~l~~ 507 (546)
T PF07888_consen 501 GHYSLCE 507 (546)
T ss_pred CCcCccc
Confidence 4677773
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.44 E-value=0.0057 Score=67.54 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004419 195 ADRLSEVEEAQQDNINLSKQLENLQNELN 223 (754)
Q Consensus 195 ~~~~~e~~~l~~~~~~~~~el~~l~~~l~ 223 (754)
.....+++.|+.....+...+.++.+.+.
T Consensus 1263 ~~a~~~LesLq~~~~~l~~~~keL~e~~~ 1291 (1758)
T KOG0994|consen 1263 PLAGKDLESLQREFNGLLTTYKELREQLE 1291 (1758)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 70
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.6e-07 Score=86.29 Aligned_cols=52 Identities=25% Similarity=0.533 Sum_probs=43.3
Q ss_pred ccCCccccccccccccc---ceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 695 DCKAILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
+......|.|||..|.. .+.+||.|.|--+|++.|.-.-..+||+||.++-+
T Consensus 319 ea~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 319 EADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred hcCCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 33445799999999954 77889999999999999998546689999998754
No 71
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.41 E-value=0.0018 Score=67.47 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=39.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 004419 608 AVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDM----RKELENERNERKKLEEELMEVNNKVAELTSETGE 683 (754)
Q Consensus 608 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~e~~~~~~~l~~l~~~~~~ 683 (754)
.+++..++..+..+...+.++...-..+.+.+..+...+.+- ...|......+.++..++..+..++..|-...
T Consensus 295 rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~k-- 372 (546)
T KOG0977|consen 295 REELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTK-- 372 (546)
T ss_pred HHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchH--
Confidence 344444444444444444444444444444444444443222 22233333344555555555555555444433
Q ss_pred HHHHHHHHHHhccCC
Q 004419 684 AAIQKLQDEIKDCKA 698 (754)
Q Consensus 684 ~~~~~l~~e~~~~~~ 698 (754)
..|+.+|..|+.
T Consensus 373 ---i~Ld~EI~~YRk 384 (546)
T KOG0977|consen 373 ---ISLDAEIAAYRK 384 (546)
T ss_pred ---hHHHhHHHHHHH
Confidence 446666666654
No 72
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=7.6e-08 Score=88.60 Aligned_cols=46 Identities=30% Similarity=0.624 Sum_probs=41.8
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
+.|-||...|.+||++.|||.||..|....+. +..+|++|...+-.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccc-cCCcceeccccccc
Confidence 57999999999999999999999999999888 57889999987654
No 73
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=1.7e-07 Score=89.12 Aligned_cols=38 Identities=24% Similarity=0.611 Sum_probs=33.4
Q ss_pred cCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 716 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 716 ~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
+|||.||.+|+..++..+...||.|+.++...++++..
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~ 62 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQL 62 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccc
Confidence 89999999999998877777899999999988876543
No 74
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.2e-07 Score=90.72 Aligned_cols=48 Identities=23% Similarity=0.652 Sum_probs=42.6
Q ss_pred CcccccccccccccceeccCCCcc-cHHHHHHHhccCCCCccccCcCcCC
Q 004419 698 AILKCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~CgH~f-C~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
+...|=||+...++++++||.|++ |+.|.+...- -.++||+||.+|..
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence 456899999999999999999998 9999999862 26689999999976
No 75
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.39 E-value=0.0037 Score=63.37 Aligned_cols=39 Identities=33% Similarity=0.371 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHhccC
Q 004419 659 ERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCK 697 (754)
Q Consensus 659 ~~~~~~~e~~~~~~~l~~l~~~~~~--~~~~~l~~e~~~~~ 697 (754)
.+..++.++..++..+......+.. ...-.|..+|..|+
T Consensus 263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR 303 (312)
T PF00038_consen 263 EIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYR 303 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444444444433333 22334555555544
No 76
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.38 E-value=0.015 Score=69.91 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004419 180 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND 224 (754)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~~ 224 (754)
...+...+......+......+..++.++..+...+..+......
T Consensus 437 dEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~ 481 (1486)
T PRK04863 437 ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL 481 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666555444
No 77
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.36 E-value=1.6e-06 Score=97.81 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhH
Q 004419 659 ERKKLEEELMEVNNKVAELTSETGE 683 (754)
Q Consensus 659 ~~~~~~~e~~~~~~~l~~l~~~~~~ 683 (754)
.+..++.++..+..++.+|+.....
T Consensus 607 e~~~l~~~~~~~ekr~~RLkevf~~ 631 (722)
T PF05557_consen 607 EIAELKAELASAEKRNQRLKEVFKA 631 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655533
No 78
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.36 E-value=0.0058 Score=63.97 Aligned_cols=8 Identities=63% Similarity=0.563 Sum_probs=3.2
Q ss_pred hhhhhhhc
Q 004419 2 FLCRLLQV 9 (754)
Q Consensus 2 ~~~~~~~~ 9 (754)
|+..+-++
T Consensus 46 ~~~~l~~~ 53 (786)
T PF05483_consen 46 FLPMLEQV 53 (786)
T ss_pred chhHHHHh
Confidence 33444444
No 79
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.5e-07 Score=99.01 Aligned_cols=46 Identities=33% Similarity=0.777 Sum_probs=41.2
Q ss_pred cCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCc
Q 004419 696 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~ 742 (754)
+...+.|+||++.|..|++++|||+||..|+..++. ....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 345589999999999999999999999999999988 5678999994
No 80
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.35 E-value=0.0096 Score=66.36 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHh
Q 004419 432 ESERRAHSQAEVLKN 446 (754)
Q Consensus 432 ~~~~~~~~~l~~l~~ 446 (754)
..+..++..+..++.
T Consensus 661 ~~ie~le~e~~~l~~ 675 (1074)
T KOG0250|consen 661 DEIEDLEREASRLQK 675 (1074)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 81
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.9e-07 Score=93.43 Aligned_cols=49 Identities=31% Similarity=0.734 Sum_probs=44.3
Q ss_pred CCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 697 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
...+.|.||+..+-.||++||||+||..|+.+.++ ....||.||.+|-.
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 56699999999999999999999999999999888 57789999988764
No 82
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.32 E-value=0.0098 Score=65.25 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH
Q 004419 430 IKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAY 509 (754)
Q Consensus 430 l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l 509 (754)
+...+..+...+......+.... +..+......+..+|..+-..+..-.............+...+.........+
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~----l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l 329 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELD----LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKEL 329 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444455555544444333321 33333333333333333333333222222233333333444444444444444
Q ss_pred HHHHHHHHHH
Q 004419 510 IAEMETIGQA 519 (754)
Q Consensus 510 ~~e~~~l~~~ 519 (754)
..++..+...
T Consensus 330 ~~Ei~~l~~s 339 (569)
T PRK04778 330 KEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHc
Confidence 4444444444
No 83
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.1e-08 Score=88.43 Aligned_cols=42 Identities=31% Similarity=0.852 Sum_probs=37.1
Q ss_pred ccccccccccccceeccCCCcc-cHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~f-C~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
.-|.|||+.+.+.+.++|||+. |..|.. +...||+||..+-.
T Consensus 301 ~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-----rm~eCPICRqyi~r 343 (350)
T KOG4275|consen 301 RLCAICMDAPRDCVFLECGHMVTCTKCGK-----RMNECPICRQYIVR 343 (350)
T ss_pred HHHHHHhcCCcceEEeecCcEEeehhhcc-----ccccCchHHHHHHH
Confidence 5799999999999999999987 999998 45589999987654
No 84
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.32 E-value=0.014 Score=66.77 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHhccCCcccccccccc---ccc------ceeccCCCcc-cHHHHHH
Q 004419 662 KLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKAILKCGVCFDR---PKE------VVITKCFHLF-CNPCIQR 728 (754)
Q Consensus 662 ~~~~e~~~~~~~l~~l~~~~~~--~~~~~l~~e~~~~~~~~~C~iC~~~---~~~------~~~~~CgH~f-C~~C~~~ 728 (754)
.+..+...+......+.+.... +....+...+..++..+.-|-|.+. |.. ++-+.|.|+- |.-|++.
T Consensus 1038 ~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~ 1116 (1294)
T KOG0962|consen 1038 SVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDK 1116 (1294)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665 7777777777777777776666543 322 3333566643 5555543
No 85
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.1e-07 Score=88.99 Aligned_cols=47 Identities=26% Similarity=0.568 Sum_probs=39.9
Q ss_pred cccccccccccc---ceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
..|.||++.|.. .++|||+|.|-..||+.|+....+.||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 599999999965 67789999999999999999754559999975543
No 86
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=98.28 E-value=3.2e-07 Score=61.19 Aligned_cols=48 Identities=31% Similarity=0.602 Sum_probs=40.3
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~ 749 (754)
...|-.|...-...+++||||+.|..|..-. +-.-||.|+.+|+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCCC
Confidence 3567778877788999999999999999976 44459999999998775
No 87
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.27 E-value=4.3e-07 Score=63.34 Aligned_cols=42 Identities=26% Similarity=0.504 Sum_probs=30.2
Q ss_pred Ccccccccccccccceec-cCCCcccHHHHHHHhc-cCCCCccc
Q 004419 698 AILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLE-IRHRKCPG 739 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~-~~~~~Cp~ 739 (754)
..+.|||....|.+||.. .|||+|....|..++. .+...||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 348999999999999886 9999999999999993 34557999
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.26 E-value=0.00029 Score=65.25 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=17.1
Q ss_pred ccccccccccc----cceeccCCCcccHHHHHHH
Q 004419 700 LKCGVCFDRPK----EVVITKCFHLFCNPCIQRN 729 (754)
Q Consensus 700 ~~C~iC~~~~~----~~~~~~CgH~fC~~C~~~~ 729 (754)
..|+-|+=... +.|+.+=.=.||..|..-.
T Consensus 198 ~~C~GC~m~l~~~~~~~V~~~d~iv~CP~CgRIL 231 (239)
T COG1579 198 RVCGGCHMKLPSQTLSKVRKKDEIVFCPYCGRIL 231 (239)
T ss_pred CcccCCeeeecHHHHHHHhcCCCCccCCccchHH
Confidence 47999953332 2333333336899997543
No 89
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.24 E-value=0.01 Score=62.00 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=23.8
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 628 LKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNK 673 (754)
Q Consensus 628 l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~ 673 (754)
....+...+.++..++.++..+..+++.+-.-...+..++...+.-
T Consensus 340 ~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkL 385 (546)
T KOG0977|consen 340 FEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKL 385 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHH
Confidence 3444455555555555555555555555444444555555544443
No 90
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.23 E-value=0.012 Score=62.40 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 004419 40 KFIEEVIDAQRVKTKSIAEAF 60 (754)
Q Consensus 40 ~~~~~~~~~~~~~~~~l~~~l 60 (754)
-..+.-|.++.+....+...+
T Consensus 44 L~aeniiqdlrserdalhe~l 64 (1265)
T KOG0976|consen 44 LDAENIIQDLRSERDALHESL 64 (1265)
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 333444455555444444433
No 91
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.22 E-value=1.2e-05 Score=90.68 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 004419 467 CQQRLSAAEAEIIELVAKLDAS 488 (754)
Q Consensus 467 ~~~~l~~~~~el~~l~~~~~~~ 488 (754)
++.+...+..++.-++..+..+
T Consensus 404 Lerq~~L~~kE~d~LR~~L~sy 425 (722)
T PF05557_consen 404 LERQKALATKERDYLRAQLKSY 425 (722)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444443
No 92
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.2e-07 Score=98.24 Aligned_cols=48 Identities=25% Similarity=0.599 Sum_probs=42.4
Q ss_pred cccccccccccc-----ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPKE-----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~~-----~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
..|+||.+.+.. |..+||||+||..|+.+|.. +...||+||..+..+.
T Consensus 292 ~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-r~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 292 ELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-RQQTCPTCRTVLYDYV 344 (543)
T ss_pred CeeeeechhhccccccccceeecccchHHHHHHHHHH-HhCcCCcchhhhhccc
Confidence 689999999887 89999999999999999999 5888999998555443
No 93
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8e-07 Score=80.96 Aligned_cols=47 Identities=30% Similarity=0.631 Sum_probs=39.5
Q ss_pred cccccccccccccceec-cCCCcccHHHHHHHhccC-CCCccccCcCcC
Q 004419 699 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIR-HRKCPGCGTAFG 745 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~-~~~Cp~C~~~~~ 745 (754)
...||+|+..++.|-+. +|||.||..|+.+..... ...||.|+.+.-
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 36899999999998777 599999999999886632 357999998776
No 94
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.19 E-value=0.018 Score=62.79 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=30.3
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 528 QHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEA 597 (754)
Q Consensus 528 ~~~~~~~~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (754)
..+..++..+......+...+......+..+...+..+...+..+..........+..+...-......+
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l 416 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKL 416 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444444444443333333333
No 95
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.18 E-value=5.5e-07 Score=85.94 Aligned_cols=47 Identities=28% Similarity=0.694 Sum_probs=41.2
Q ss_pred cccccccccccceeccCCCcccHHHHHHHhccC-CCCccccCcCcCCC
Q 004419 701 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR-HRKCPGCGTAFGQS 747 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~-~~~Cp~C~~~~~~~ 747 (754)
-|.||-++-++..+-||||+.|.+|+.+|.... ...||+||.-+...
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 699999999999999999999999999998654 66799999766554
No 96
>PF04641 Rtf2: Rtf2 RING-finger
Probab=98.18 E-value=1.1e-06 Score=85.08 Aligned_cols=56 Identities=21% Similarity=0.461 Sum_probs=45.9
Q ss_pred cCCccccccccccccc----ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 696 CKAILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
....+.|||++..|.. .++.||||+||..|+...- ....||.|+.+|...||.+|.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEec
Confidence 3456899999988854 4455999999999999983 255799999999999988764
No 97
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.16 E-value=0.012 Score=59.69 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 241 LQHWNVEVERYKALTDSLLIDRSLVLRREKEIN 273 (754)
Q Consensus 241 ~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 273 (754)
+..|...+..|...+-.++.+...+...+..+.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~ 38 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELR 38 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 444444445555555555555544444444443
No 98
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.13 E-value=0.017 Score=60.39 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=17.8
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 177 RMDLQELKDSVEEAKILAADRLSEVEEAQQDNIN 210 (754)
Q Consensus 177 ~~~~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~ 210 (754)
+..+..+..+|..+...+...+..+-........
T Consensus 345 q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~ 378 (961)
T KOG4673|consen 345 QLELDKTKKEIKMLNNALEAREAQLLADEIAKAM 378 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655555544444333333
No 99
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=0.027 Score=61.71 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 004419 431 KESERRAHSQAEVLKNAL 448 (754)
Q Consensus 431 ~~~~~~~~~~l~~l~~~l 448 (754)
.........++..|...|
T Consensus 670 ~k~~~~~~~~~~~l~~~L 687 (1200)
T KOG0964|consen 670 LKNVNESRSELKELQESL 687 (1200)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 334444444444444433
No 100
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.09 E-value=0.026 Score=61.03 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccCCCCc--hhHHHHHHHHHHHHHHHHHHHh
Q 004419 388 EQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDP--RDLMEIKESERRAHSQAEVLKN 446 (754)
Q Consensus 388 ~~~~e~~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~l~~l~~ 446 (754)
.+..++..++.+++.+..++.-|+..+..-.+..... -.+..++..-..+..-+..|+.
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444666667777777777777776665444333222 4455666666666666665554
No 101
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.08 E-value=2.3e-06 Score=63.85 Aligned_cols=47 Identities=28% Similarity=0.555 Sum_probs=35.8
Q ss_pred cccccccccccc------------ceec-cCCCcccHHHHHHHhccC--CCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKE------------VVIT-KCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~------------~~~~-~CgH~fC~~C~~~~~~~~--~~~Cp~C~~~~~~ 746 (754)
-.|+||...|.. |++. .|||.|-..||..|+... ...||+||.+|.-
T Consensus 22 d~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 22 DVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 467777666632 3333 799999999999999863 4679999998853
No 102
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.043 Score=60.99 Aligned_cols=22 Identities=14% Similarity=0.364 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 004419 425 RDLMEIKESERRAHSQAEVLKN 446 (754)
Q Consensus 425 ~~~~~l~~~~~~~~~~l~~l~~ 446 (754)
..+..|......+..++..+..
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~ 673 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQK 673 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666655
No 103
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.97 E-value=0.016 Score=64.05 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 004419 610 NLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETG 682 (754)
Q Consensus 610 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~~~~~ 682 (754)
+.+.+-..+..++.+-..|+..+..-..-.-+|-..+.+...+++-....+..-+.+|..++.+|..+.+..+
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p 660 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMP 660 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444444455555555555555554444445556666677777777777777777777777777777666653
No 104
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.97 E-value=0.048 Score=59.61 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 004419 586 AEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAV 632 (754)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 632 (754)
+...+..+......+...+..+...-...+..+..+...+...+..+
T Consensus 384 ~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 384 IEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444444444433
No 105
>PRK11637 AmiB activator; Provisional
Probab=97.96 E-value=0.015 Score=61.56 Aligned_cols=6 Identities=17% Similarity=-0.308 Sum_probs=3.0
Q ss_pred cccccc
Q 004419 699 ILKCGV 704 (754)
Q Consensus 699 ~~~C~i 704 (754)
.+..|+
T Consensus 306 ~~~~Pv 311 (428)
T PRK11637 306 QAFWPV 311 (428)
T ss_pred CCccCC
Confidence 345554
No 106
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.96 E-value=1.6e-06 Score=90.08 Aligned_cols=49 Identities=22% Similarity=0.531 Sum_probs=40.4
Q ss_pred cccccccccccceec---cCCCcccHHHHHHHhccCCCCccccCcCcCCCCCc
Q 004419 701 KCGVCFDRPKEVVIT---KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVR 750 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~---~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~ 750 (754)
.||+|...|.+..+. +|+|.||..|+.+|... -..||.||.-|+.-++.
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhheeeee
Confidence 688898888774333 89999999999999885 55799999999976654
No 107
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.059 Score=60.02 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=26.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004419 178 MDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND 224 (754)
Q Consensus 178 ~~~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~~ 224 (754)
..+......+...+.........+..+++++..+......+..++..
T Consensus 303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555666665555555555555555544
No 108
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=6.1e-06 Score=73.61 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=46.2
Q ss_pred Cccccccccccccc----ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 698 AILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 698 ~~~~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
..+.||||.+...+ .|+-||||+||..|+..++. ...-||+|+.+...+||..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEee
Confidence 45899999999988 44459999999999999988 46679999999999998654
No 109
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.91 E-value=4.3e-06 Score=76.65 Aligned_cols=43 Identities=37% Similarity=0.773 Sum_probs=39.0
Q ss_pred ccccccccccccceecc-CCCcccHHHHHHHhccCCCCccccCc
Q 004419 700 LKCGVCFDRPKEVVITK-CFHLFCNPCIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~-CgH~fC~~C~~~~~~~~~~~Cp~C~~ 742 (754)
+.|++|.-..++|+-++ |||+||..||.+.+-....+||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 89999999999999994 79999999999887767889999976
No 110
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.91 E-value=3.6e-06 Score=83.58 Aligned_cols=53 Identities=28% Similarity=0.716 Sum_probs=44.5
Q ss_pred cCCcccccccccccccceeccCCCcccHHHHH----HHhccCCCCccccCcCcCCCC
Q 004419 696 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQ----RNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~----~~~~~~~~~Cp~C~~~~~~~d 748 (754)
-.....|.+|.++-.+++.+.|-|.||.-|+. .+....+.+||+|..+++..+
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 34557999999999999999999999999994 455556788999999887654
No 111
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.90 E-value=0.024 Score=63.12 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 004419 594 LTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELEN 655 (754)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~ 655 (754)
...+..+...+......+..+......++.++..+..........+..+...+.++...+..
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 397 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444444444444444444444333
No 112
>PRK11637 AmiB activator; Provisional
Probab=97.90 E-value=0.039 Score=58.48 Aligned_cols=18 Identities=0% Similarity=0.111 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004419 429 EIKESERRAHSQAEVLKN 446 (754)
Q Consensus 429 ~l~~~~~~~~~~l~~l~~ 446 (754)
.+..++..+..++..+..
T Consensus 44 ~~~~~l~~l~~qi~~~~~ 61 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEK 61 (428)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 113
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.89 E-value=3e-06 Score=80.03 Aligned_cols=53 Identities=26% Similarity=0.703 Sum_probs=43.3
Q ss_pred hccCCccccccccccccccee-ccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 694 KDCKAILKCGVCFDRPKEVVI-TKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~-~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..+...+.|.+|.-=|.++.+ +-|-|+||.+||-.++.. ...||.|+..+...
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKT 63 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCc
Confidence 344556899999888877544 479999999999999996 88999999877764
No 114
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=2.7e-06 Score=81.58 Aligned_cols=43 Identities=33% Similarity=0.720 Sum_probs=34.8
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
.-|.||.+.+.+.+.+||||+.| |..-... .+.||.||..+..
T Consensus 306 ~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 306 DLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIRL 348 (355)
T ss_pred CceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHHH
Confidence 58999999999999999999987 5443333 4459999988765
No 115
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.89 E-value=0.068 Score=58.88 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 179 DLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQN 220 (754)
Q Consensus 179 ~~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~ 220 (754)
.+-.+...+..+.............+..+...+..+-..+..
T Consensus 302 eiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~ 343 (1195)
T KOG4643|consen 302 EIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDG 343 (1195)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444444445554444444444444433
No 116
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.87 E-value=0.018 Score=64.02 Aligned_cols=62 Identities=10% Similarity=0.184 Sum_probs=24.7
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004419 479 IELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDL 540 (754)
Q Consensus 479 ~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 540 (754)
..++.+++.+......+..++..++.++..+...+......+..+...+..+...+..++..
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~ 277 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV 277 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443333333333333444444444444333333
No 117
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.82 E-value=7.6e-06 Score=83.87 Aligned_cols=53 Identities=32% Similarity=0.709 Sum_probs=46.2
Q ss_pred cCCcccccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCCCC
Q 004419 696 CKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~ 749 (754)
+...+.|++|+..+.+|+.+ .|||.||..|+..|... ..+||.|+........
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhc
Confidence 45569999999999999995 99999999999999996 7899999887766543
No 118
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.78 E-value=0.022 Score=49.96 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004419 562 KQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKW 627 (754)
Q Consensus 562 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 627 (754)
+.-+..++.............+..+...+..+...+..+...-..+....+.+...+..+...+.+
T Consensus 90 L~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkE 155 (205)
T KOG1003|consen 90 LVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKE 155 (205)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444444444444444444443333444444444444444333333
No 119
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.76 E-value=0.025 Score=49.89 Aligned_cols=13 Identities=8% Similarity=-0.043 Sum_probs=4.7
Q ss_pred HhHHHHHHHHHHH
Q 004419 609 VNLETTKWELADA 621 (754)
Q Consensus 609 ~~~~~~~~~~~~l 621 (754)
...+.+..+..++
T Consensus 116 ~e~~~lk~~~~eL 128 (193)
T PF14662_consen 116 AERDGLKKRSKEL 128 (193)
T ss_pred HhhhhHHHHHHHH
Confidence 3333333333333
No 120
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.70 E-value=0.14 Score=56.69 Aligned_cols=44 Identities=11% Similarity=0.313 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004419 180 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELN 223 (754)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~ 223 (754)
+..++..+..++..+......+-.++.+++.++.++..++.+..
T Consensus 179 lAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~ 222 (1195)
T KOG4643|consen 179 LADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIE 222 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444445555555554444443
No 121
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.9e-05 Score=77.50 Aligned_cols=48 Identities=27% Similarity=0.698 Sum_probs=39.0
Q ss_pred cccccccccccccce-----e---ccCCCcccHHHHHHHhccCC------CCccccCcCcCC
Q 004419 699 ILKCGVCFDRPKEVV-----I---TKCFHLFCNPCIQRNLEIRH------RKCPGCGTAFGQ 746 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~-----~---~~CgH~fC~~C~~~~~~~~~------~~Cp~C~~~~~~ 746 (754)
...|.|||++....+ . .+|-|.||-.||..|...+. +.||.||.+..-
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 479999999876655 2 57999999999999986554 679999977653
No 122
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.63 E-value=3.7e-05 Score=50.46 Aligned_cols=44 Identities=25% Similarity=0.658 Sum_probs=22.8
Q ss_pred ccccccccc--cceec--cCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 702 CGVCFDRPK--EVVIT--KCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 702 C~iC~~~~~--~~~~~--~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
||+|.+.+. +.-+. +||+.+|..|...........||.||.+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 788977762 23333 689999999999988766888999999874
No 123
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.12 Score=55.60 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004419 652 ELENERNERKKLEEELMEVNNKVAELTSET 681 (754)
Q Consensus 652 ~l~~~~~~~~~~~~e~~~~~~~l~~l~~~~ 681 (754)
+-+.+..........+..+++.+..|....
T Consensus 912 eqee~~v~~~~~~~~i~alk~~l~dL~q~~ 941 (970)
T KOG0946|consen 912 EQEELLVLLADQKEKIQALKEALEDLNQPV 941 (970)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence 333333444455555566666666655443
No 124
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=2.4e-05 Score=73.75 Aligned_cols=46 Identities=28% Similarity=0.626 Sum_probs=41.0
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
..||||+-...+.|+.||||.-|+.||..+.-+ ...|..|+..+..
T Consensus 423 ~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 423 NLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVID 468 (489)
T ss_pred ccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceeee
Confidence 589999999999999999999999999999885 5569999987763
No 125
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.61 E-value=2.6e-05 Score=76.54 Aligned_cols=47 Identities=23% Similarity=0.597 Sum_probs=38.0
Q ss_pred CCcccccccccccccc----eeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 697 KAILKCGVCFDRPKEV----VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~~----~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
....+||||.+++... +.++|.|+|-..|+..|+. ..||+||-+-++
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~p 223 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQSP 223 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcCc
Confidence 3457999999988663 4569999999999999955 479999977764
No 126
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.58 E-value=0.023 Score=49.04 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 646 TEDMRKELENERNERKKLEEELMEVNNKVAELT 678 (754)
Q Consensus 646 ~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~ 678 (754)
+..+......+...+..++.+...+..+++.+.
T Consensus 103 l~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 103 LREADVKAEHFERKVKALEQERDQWEEKYEELE 135 (143)
T ss_pred HHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333333344444444444444333
No 127
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.57 E-value=0.21 Score=55.50 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=32.2
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHhccC
Q 004419 632 VTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCK 697 (754)
Q Consensus 632 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~~~~~~--~~~~~l~~e~~~~~ 697 (754)
.+.+-..+..++++-..++..|.....-.-.+=..+...+.+++.+...... ..+..|+..|..+.
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555444333444444555555555555444433 44555555544443
No 128
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.51 E-value=0.097 Score=50.09 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 591 KACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLE 664 (754)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 664 (754)
..+......+...+..+..+...+...+..+-.....++...+.+...+......+..+...+..+...+..+.
T Consensus 168 ~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 168 DELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444444444444444444444333333333333333333333
No 129
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=3.8e-05 Score=76.00 Aligned_cols=49 Identities=20% Similarity=0.601 Sum_probs=39.3
Q ss_pred Cccccccccccc-----------------ccceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 698 AILKCGVCFDRP-----------------KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 698 ~~~~C~iC~~~~-----------------~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
...-|+|||... ++...+||.|+|-..|+..|.....--||.||.++-+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 346899998764 2255679999999999999999666679999988753
No 130
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=97.49 E-value=1.9e-05 Score=70.07 Aligned_cols=46 Identities=35% Similarity=0.878 Sum_probs=37.0
Q ss_pred cccccc-ccccccceec----c-CCCcccHHHHHHHhccCCCCcc--ccCcCcC
Q 004419 700 LKCGVC-FDRPKEVVIT----K-CFHLFCNPCIQRNLEIRHRKCP--GCGTAFG 745 (754)
Q Consensus 700 ~~C~iC-~~~~~~~~~~----~-CgH~fC~~C~~~~~~~~~~~Cp--~C~~~~~ 745 (754)
-.|||| .+.|-+|-+. | |.|..|.+|+++.++.+..-|| .|+..+.
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 489999 5777664322 5 9999999999999999888999 6985443
No 131
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.38 E-value=0.14 Score=48.99 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 004419 610 NLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDM 649 (754)
Q Consensus 610 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 649 (754)
..+.++.....+...+..+...+..+...+..++..+.++
T Consensus 201 ~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 201 EADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 132
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.36 E-value=4.3e-05 Score=86.07 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred CCCCccccCcCc
Q 004419 733 RHRKCPGCGTAF 744 (754)
Q Consensus 733 ~~~~Cp~C~~~~ 744 (754)
+++-+|.-|.+.
T Consensus 692 rqR~~~~~r~~~ 703 (713)
T PF05622_consen 692 RQRQATNARRGP 703 (713)
T ss_dssp ------------
T ss_pred HhhccccCCCCC
Confidence 455555444443
No 133
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.34 Score=52.44 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 004419 392 EIKSLKALIE 401 (754)
Q Consensus 392 e~~~l~~~l~ 401 (754)
+.+.|...+.
T Consensus 686 e~eeL~~~vq 695 (970)
T KOG0946|consen 686 ENEELEEEVQ 695 (970)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 134
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.27 E-value=0.35 Score=51.12 Aligned_cols=9 Identities=33% Similarity=0.589 Sum_probs=3.7
Q ss_pred chHHHHHHH
Q 004419 20 ILQYVEEAL 28 (754)
Q Consensus 20 ~~~~~~~~l 28 (754)
..+.+...|
T Consensus 309 ~s~~v~~el 317 (961)
T KOG4673|consen 309 ISDFVSREL 317 (961)
T ss_pred cchHHHHHh
Confidence 344444443
No 135
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.25 E-value=0.00021 Score=51.42 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=34.4
Q ss_pred ccccccccccc----ceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 701 KCGVCFDRPKE----VVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 701 ~C~iC~~~~~~----~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
.|+-|.-.... |+.- .|.|.|-..||.+|+.+ ..-||.|+.+|.-.|
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~~~ 84 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVLAD 84 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEEec
Confidence 56666443321 3333 79999999999999997 556999999986544
No 136
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.22 E-value=0.46 Score=51.68 Aligned_cols=25 Identities=4% Similarity=0.139 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcc
Q 004419 425 RDLMEIKESERRAHSQAEVLKNALD 449 (754)
Q Consensus 425 ~~~~~l~~~~~~~~~~l~~l~~~l~ 449 (754)
..+..|..-+......+..|..+.+
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe 418 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWE 418 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554433
No 137
>PRK09039 hypothetical protein; Validated
Probab=97.20 E-value=0.15 Score=51.77 Aligned_cols=9 Identities=11% Similarity=-0.334 Sum_probs=4.8
Q ss_pred eccCCCccc
Q 004419 714 ITKCFHLFC 722 (754)
Q Consensus 714 ~~~CgH~fC 722 (754)
+.--||+=+
T Consensus 265 I~I~GHTD~ 273 (343)
T PRK09039 265 LRVDGHTDN 273 (343)
T ss_pred EEEEEecCC
Confidence 344566554
No 138
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.19 E-value=7.2e-05 Score=81.46 Aligned_cols=48 Identities=27% Similarity=0.736 Sum_probs=41.3
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCC-CccccCcCcCCCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHR-KCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~-~Cp~C~~~~~~~d 748 (754)
+.|++|.+ ...+++++|||.||..|+...+..... .||.|+..+...+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 79999999 888999999999999999999886544 5999997766544
No 139
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00028 Score=68.98 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=50.7
Q ss_pred ccCCccccccccccc---ccceeccCCCcccHHHHHHHhccCC--CCccccCcCcCCCCCcccCC
Q 004419 695 DCKAILKCGVCFDRP---KEVVITKCFHLFCNPCIQRNLEIRH--RKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~---~~~~~~~CgH~fC~~C~~~~~~~~~--~~Cp~C~~~~~~~d~~~~~~ 754 (754)
.+-+.+.|||=.+-- .-|+.+.|||+.|..-+.....++. .|||=|-.-....|.+++||
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 445668999974433 3389999999999999999999877 78999999999999999997
No 140
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00014 Score=68.59 Aligned_cols=53 Identities=23% Similarity=0.454 Sum_probs=43.9
Q ss_pred cccccccccccc-ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 700 LKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 700 ~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
-.||||...-.+ +|...-|-+||..|+-++.. ....||+.+.|....++.++|
T Consensus 301 ~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 301 EVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchHHHHHHHh
Confidence 589999766655 45557799999999999998 477899999999888877766
No 141
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.07 E-value=0.35 Score=47.35 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004419 653 LENERNERKKLEEELMEV 670 (754)
Q Consensus 653 l~~~~~~~~~~~~e~~~~ 670 (754)
+..++.....++.++..+
T Consensus 261 lq~lEt~q~~leqeva~l 278 (499)
T COG4372 261 LQRLETAQARLEQEVAQL 278 (499)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333334333333
No 142
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.06 E-value=0.3 Score=46.46 Aligned_cols=103 Identities=16% Similarity=0.071 Sum_probs=43.7
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 529 HLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLA 608 (754)
Q Consensus 529 ~~~~~~~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (754)
.+...+..+.....-|...+..++..+..+..++......+....--++.....+....-+++.+...+..-...+....
T Consensus 134 kmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~ 213 (305)
T PF14915_consen 134 KMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYI 213 (305)
T ss_pred HhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444444455555555555555555554444444433333333333333333333333333333333333333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 004419 609 VNLETTKWELADAEKELKWLKSA 631 (754)
Q Consensus 609 ~~~~~~~~~~~~l~~~~~~l~~~ 631 (754)
...+.+..++..++.+-.-++++
T Consensus 214 ~Kqes~eERL~QlqsEN~LLrQQ 236 (305)
T PF14915_consen 214 GKQESLEERLSQLQSENMLLRQQ 236 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333333
No 143
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=0.6 Score=48.78 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 004419 392 EIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSL 453 (754)
Q Consensus 392 e~~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~ 453 (754)
++..-..++..++.....|+..++.. .-...++.....+...+...+..+..+++....
T Consensus 302 Eie~kEeE~e~lq~~~d~Lk~~Ie~Q---~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 302 EIEEKEEEIEKLQKENDELKKQIELQ---GISGEDVERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444321 223355666666666666666666666555433
No 144
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00067 Score=66.30 Aligned_cols=43 Identities=28% Similarity=0.816 Sum_probs=33.6
Q ss_pred ccccccccccccc---ceeccCCCcccHHHHHHHhcc-------CCCCccccC
Q 004419 699 ILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEI-------RHRKCPGCG 741 (754)
Q Consensus 699 ~~~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~-------~~~~Cp~C~ 741 (754)
.+-|.||++.+.- -+.+||+|.||..|..++... ...+||-|+
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 3899999988754 556699999999999998864 233688843
No 145
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00018 Score=65.53 Aligned_cols=52 Identities=21% Similarity=0.401 Sum_probs=40.5
Q ss_pred cccccccccccc----------ceeccCCCcccHHHHHHHhccC-CCCccccCcCcCCCCCcc
Q 004419 700 LKCGVCFDRPKE----------VVITKCFHLFCNPCIQRNLEIR-HRKCPGCGTAFGQSDVRF 751 (754)
Q Consensus 700 ~~C~iC~~~~~~----------~~~~~CgH~fC~~C~~~~~~~~-~~~Cp~C~~~~~~~d~~~ 751 (754)
-.|.||+..+.. .-.+.|+|.|-..||..|.=.+ ..+||-|+..++...+.+
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfs 287 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFS 287 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhcc
Confidence 579999887754 3467999999999999997643 236999999988665443
No 146
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.94 E-value=0.00035 Score=65.77 Aligned_cols=53 Identities=21% Similarity=0.556 Sum_probs=42.7
Q ss_pred ccccccccccc----cceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 700 LKCGVCFDRPK----EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 700 ~~C~iC~~~~~----~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
-.||+|++.+. +-.-.+||-..|.-|.......-+..||.||..++..+|+.+
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~ 71 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYV 71 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEE
Confidence 35999998763 233348999999999998877777789999999999888754
No 147
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00023 Score=50.77 Aligned_cols=35 Identities=26% Similarity=0.619 Sum_probs=27.8
Q ss_pred ceec-cCCCcccHHHHHHHhccC--CCCccccCcCcCC
Q 004419 712 VVIT-KCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQ 746 (754)
Q Consensus 712 ~~~~-~CgH~fC~~C~~~~~~~~--~~~Cp~C~~~~~~ 746 (754)
|.++ .|.|.|=..||..|+... +..||.||..|.-
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 4444 699999999999999864 4469999998753
No 148
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.87 E-value=0.99 Score=49.47 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 103 DQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLK 144 (754)
Q Consensus 103 ~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~ 144 (754)
.+...+...+..+..++..+..+.+.....+..+...+..++
T Consensus 22 ~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 22 EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555556666666666666666666666665
No 149
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=1 Score=48.63 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=6.3
Q ss_pred cCcCCCCCcccC
Q 004419 742 TAFGQSDVRFVK 753 (754)
Q Consensus 742 ~~~~~~d~~~~~ 753 (754)
..|.++||.-||
T Consensus 710 isf~pGDII~V~ 721 (1118)
T KOG1029|consen 710 ISFEPGDIIIVF 721 (1118)
T ss_pred ccccCCCEEEEe
Confidence 455566655443
No 150
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.77 E-value=0.0007 Score=65.76 Aligned_cols=45 Identities=31% Similarity=0.758 Sum_probs=36.6
Q ss_pred Ccccccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 698 AILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
..+.||||+..+.-|+.- +=||+.|.+|.... ..+||.|+.+|+.
T Consensus 47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc
Confidence 347999999999877443 45999999999754 5579999999983
No 151
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.71 E-value=0.00079 Score=63.65 Aligned_cols=45 Identities=24% Similarity=0.594 Sum_probs=37.7
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhcc-CCCCccccCcC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI-RHRKCPGCGTA 743 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~-~~~~Cp~C~~~ 743 (754)
...|-||-...+-.+++||||..|..|.-+.... ....||.||.-
T Consensus 61 n~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 61 NMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 3689999999999999999999999999876542 34569999954
No 152
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.68 E-value=1.2 Score=47.77 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=12.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 004419 335 SALSKEMGMMEAQLNRWKETADEAL 359 (754)
Q Consensus 335 ~~l~~~~~~l~~~~~~~~~~~~~~~ 359 (754)
..++-+...+...+..|........
T Consensus 302 ~~LELeN~~l~tkL~rwE~~~~~~~ 326 (716)
T KOG4593|consen 302 LGLELENEDLLTKLQRWERADQEMG 326 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344444455555555555444433
No 153
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.00085 Score=62.50 Aligned_cols=34 Identities=24% Similarity=0.769 Sum_probs=30.2
Q ss_pred cCCCcccHHHHHHHhccCCCCccccCcCcCCCCC
Q 004419 716 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 716 ~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~ 749 (754)
+|||..|.+|+++.+..+...||.|+...-.+.+
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 9999999999999999999999999987665543
No 154
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.00086 Score=61.62 Aligned_cols=41 Identities=32% Similarity=0.708 Sum_probs=34.6
Q ss_pred cccccccccccceeccCCCcc-cHHHHHHHhccCCCCccccCcCcCC
Q 004419 701 KCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~~CgH~f-C~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
.|-.|++.-...+++||.|.. |..|-.+ -+.||.|+.+...
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 399999999989999999975 9999985 2359999987765
No 155
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.65 E-value=0.94 Score=46.13 Aligned_cols=14 Identities=7% Similarity=0.219 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHh
Q 004419 433 SERRAHSQAEVLKN 446 (754)
Q Consensus 433 ~~~~~~~~l~~l~~ 446 (754)
.+..++.++..+..
T Consensus 39 ~l~q~q~ei~~~~~ 52 (420)
T COG4942 39 QLKQIQKEIAALEK 52 (420)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 156
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.64 E-value=0.0057 Score=49.69 Aligned_cols=51 Identities=27% Similarity=0.598 Sum_probs=43.1
Q ss_pred Ccccccccccccccceecc----CCCcccHHHHHHHhccC--CCCccccCcCcCCCC
Q 004419 698 AILKCGVCFDRPKEVVITK----CFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQSD 748 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~~----CgH~fC~~C~~~~~~~~--~~~Cp~C~~~~~~~d 748 (754)
....|-||.+...+.-.++ ||-..|..|.-..|+.. .+.||.|+..|.++.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4579999999998877773 99999999999999853 557999999998764
No 157
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.63 E-value=1.5 Score=48.15 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004419 198 LSEVEEAQQDNINLSKQLENLQNELN 223 (754)
Q Consensus 198 ~~e~~~l~~~~~~~~~el~~l~~~l~ 223 (754)
..+.......+..+...+..++..+.
T Consensus 42 ~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 42 KEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333334444444444444444
No 158
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0006 Score=70.13 Aligned_cols=37 Identities=30% Similarity=0.720 Sum_probs=30.4
Q ss_pred ccccccccccccc----ceeccCCCcccHHHHHHHhccCCCCcc
Q 004419 699 ILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCP 738 (754)
Q Consensus 699 ~~~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~~~~Cp 738 (754)
.++|+||...|-. ||.+.|||+.|..|...... ..||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 4899999666633 99999999999999998855 3677
No 159
>PF13514 AAA_27: AAA domain
Probab=96.57 E-value=2.8 Score=50.67 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=28.0
Q ss_pred HHhhHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004419 50 RVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHK 99 (754)
Q Consensus 50 ~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 99 (754)
...+..+...+.........+..+..........+..++.++..+.....
T Consensus 156 l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~ 205 (1111)
T PF13514_consen 156 LKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELR 205 (1111)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555666666666666666666655555533
No 160
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.55 E-value=1.3 Score=46.47 Aligned_cols=106 Identities=15% Similarity=0.228 Sum_probs=62.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004419 23 YVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYA 102 (754)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 102 (754)
+++..+..+.. .....+-..++.++.....+..++++.....+.+..+.+....++..+..++.-+..+......+.
T Consensus 217 ~~~~Elk~~l~---~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~ 293 (581)
T KOG0995|consen 217 ELEDELKHRLE---KYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHME 293 (581)
T ss_pred hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHH
Confidence 34455544433 334445556677777777777777766666666666767777777777777776666666655555
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 004419 103 DQIENYISSHSVDQAEIQHLAGELEETMA 131 (754)
Q Consensus 103 ~~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 131 (754)
..+..+...+.....++..+..+.+.+..
T Consensus 294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 294 KKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444444444444444333
No 161
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.00095 Score=66.93 Aligned_cols=40 Identities=28% Similarity=0.526 Sum_probs=33.5
Q ss_pred ccceeccCCCcccHHHHHHHhccCCCCccccCcC--cCCCCC
Q 004419 710 KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTA--FGQSDV 749 (754)
Q Consensus 710 ~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~--~~~~d~ 749 (754)
..|.++.|||+||..|+.....+....||.||.+ +...++
T Consensus 20 ~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~ 61 (296)
T KOG4185|consen 20 HIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDV 61 (296)
T ss_pred cCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhH
Confidence 3477888999999999999999888899999999 444443
No 162
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.0038 Score=67.69 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=27.2
Q ss_pred cCCccccccccccccc--ceeccCCCcccHHHHHHHhc
Q 004419 696 CKAILKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLE 731 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~--~~~~~CgH~fC~~C~~~~~~ 731 (754)
+...-+|.+|+..+-. -++.||||.|-..|+.....
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3444699999877633 44559999999999987663
No 163
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.005 Score=66.26 Aligned_cols=80 Identities=18% Similarity=0.391 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCcccccccccccccc-eeccCCCcccHH
Q 004419 646 TEDMRKELENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEV-VITKCFHLFCNP 724 (754)
Q Consensus 646 ~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~e~~~~~~~~~C~iC~~~~~~~-~~~~CgH~fC~~ 724 (754)
+..-...+++-+..++...+++...+..+..+..... .-..-.|+.|.-...-| |...|||.|-..
T Consensus 800 l~~~~~~I~qd~~~Ie~yk~~i~e~r~~l~~lr~sa~-------------i~q~skCs~C~~~LdlP~VhF~CgHsyHqh 866 (933)
T KOG2114|consen 800 LNKYSTIIEQDEDAIEVYKKDIEEKRQELETLRTSAQ-------------IFQVSKCSACEGTLDLPFVHFLCGHSYHQH 866 (933)
T ss_pred HHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccc-------------eeeeeeecccCCccccceeeeecccHHHHH
Confidence 3344444555555566666666666666665543321 01114899997777655 455999999999
Q ss_pred HHHHHhccCCCCccccCc
Q 004419 725 CIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 725 C~~~~~~~~~~~Cp~C~~ 742 (754)
|... ...+||.|..
T Consensus 867 C~e~----~~~~CP~C~~ 880 (933)
T KOG2114|consen 867 CLED----KEDKCPKCLP 880 (933)
T ss_pred hhcc----CcccCCccch
Confidence 9993 4568999987
No 164
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.001 Score=61.21 Aligned_cols=41 Identities=29% Similarity=0.786 Sum_probs=33.3
Q ss_pred cccccccccccccceeccC----CCcccHHHHHHHhcc----CCCCccc
Q 004419 699 ILKCGVCFDRPKEVVITKC----FHLFCNPCIQRNLEI----RHRKCPG 739 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~C----gH~fC~~C~~~~~~~----~~~~Cp~ 739 (754)
.++|.+|.+++.|+-+.-| +|-|||.|....++. .-..||.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 4899999999999877777 899999999998874 2234665
No 165
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.43 E-value=2.1 Score=47.43 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 186 SVEEAKILAADRLSEVEEAQQDNINLSKQLENLQN 220 (754)
Q Consensus 186 ~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~ 220 (754)
++.+++..-..+-.++..++.+.-.+++.+..++.
T Consensus 84 e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 84 EIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444445555444444
No 166
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.41 E-value=0.0026 Score=43.06 Aligned_cols=41 Identities=20% Similarity=0.643 Sum_probs=32.8
Q ss_pred ccccccc--ccccceeccCC-----CcccHHHHHHHhccC-CCCccccC
Q 004419 701 KCGVCFD--RPKEVVITKCF-----HLFCNPCIQRNLEIR-HRKCPGCG 741 (754)
Q Consensus 701 ~C~iC~~--~~~~~~~~~Cg-----H~fC~~C~~~~~~~~-~~~Cp~C~ 741 (754)
.|-||++ ...++.+.||. |.|=..|+..|+... ...||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889986 44568888995 899999999999754 44799995
No 167
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=96.41 E-value=0.14 Score=40.73 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 510 IAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEE 588 (754)
Q Consensus 510 ~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~ 588 (754)
..++..++..+.........+...+..++..+..+..++.++.+.+..+....+.+..++..+...+.....-+..+..
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4567788888888888999999999999999999999999999999999999999999988888877776666655544
No 168
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=2 Score=46.20 Aligned_cols=14 Identities=14% Similarity=0.321 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhhh
Q 004419 666 ELMEVNNKVAELTS 679 (754)
Q Consensus 666 e~~~~~~~l~~l~~ 679 (754)
++..++.++..+..
T Consensus 601 ev~qlk~ev~s~ek 614 (716)
T KOG4593|consen 601 EVAQLKKEVESAEK 614 (716)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 169
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.29 E-value=0.00085 Score=49.62 Aligned_cols=48 Identities=25% Similarity=0.614 Sum_probs=24.2
Q ss_pred ccccccccccc-c---ceec----cCCCcccHHHHHHHhcc----C------CCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPK-E---VVIT----KCFHLFCNPCIQRNLEI----R------HRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~-~---~~~~----~CgH~fC~~C~~~~~~~----~------~~~Cp~C~~~~~~~ 747 (754)
+.|+||+..+. + |+.. .||+.|=..|+..|+.. + ...||.|+.+++-+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 68999987654 2 2222 69999999999999853 1 23599999988643
No 170
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0028 Score=48.49 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=25.0
Q ss_pred cCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 716 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 716 ~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
.|.|.|-+.||..|++++++ ||.|.....
T Consensus 80 ~CNHaFH~hCisrWlktr~v-CPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNV-CPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcCc-CCCcCccee
Confidence 69999999999999998665 999987543
No 171
>PHA03096 p28-like protein; Provisional
Probab=96.20 E-value=0.002 Score=62.15 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=32.6
Q ss_pred cccccccccccc--------ceeccCCCcccHHHHHHHhccCCC--CccccCcCc
Q 004419 700 LKCGVCFDRPKE--------VVITKCFHLFCNPCIQRNLEIRHR--KCPGCGTAF 744 (754)
Q Consensus 700 ~~C~iC~~~~~~--------~~~~~CgH~fC~~C~~~~~~~~~~--~Cp~C~~~~ 744 (754)
..|.||+++... .++..|.|.||..|+..|...+.. .||.|+.+-
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~ 233 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLN 233 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchh
Confidence 579999987532 445589999999999999875432 366666443
No 172
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.20 E-value=0.98 Score=41.35 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=14.2
Q ss_pred HhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004419 535 AERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQ 571 (754)
Q Consensus 535 ~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~ 571 (754)
....+++..+...+.........+...+.....++..
T Consensus 64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k 100 (194)
T PF15619_consen 64 QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK 100 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334433333333
No 173
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.19 E-value=0.68 Score=39.44 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 556 SFLLSEKQALARQLQQINALVESAKLRILHAEEQ 589 (754)
Q Consensus 556 ~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 589 (754)
..+..++...+.....+..+.+.....+..+...
T Consensus 27 ~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~e 60 (140)
T PF10473_consen 27 ESLERELEMSQENKECLILDAENSKAEIETLEEE 60 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 174
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=96.16 E-value=0.0055 Score=41.18 Aligned_cols=48 Identities=23% Similarity=0.483 Sum_probs=34.6
Q ss_pred ccccccccccccc--ceeccCCC--cccHHHHHHHhccCCCCccccCcCcCCCCC
Q 004419 699 ILKCGVCFDRPKE--VVITKCFH--LFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 699 ~~~C~iC~~~~~~--~~~~~CgH--~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~ 749 (754)
...|..|...+.. +-..-|.+ +||..|....+.. .||.|+..|..+-+
T Consensus 5 rpnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~---~CPNCgGelv~RP~ 56 (57)
T PF06906_consen 5 RPNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNG---VCPNCGGELVRRPR 56 (57)
T ss_pred CCCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcC---cCcCCCCccccCCC
Confidence 3578888665532 23455665 8999999998643 69999999887643
No 175
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=96.15 E-value=0.0039 Score=42.39 Aligned_cols=44 Identities=32% Similarity=0.634 Sum_probs=23.0
Q ss_pred ccccccccccccceec-cCCCcccHHH---HHHHhccCCCCccccCcC
Q 004419 700 LKCGVCFDRPKEVVIT-KCFHLFCNPC---IQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~-~CgH~fC~~C---~~~~~~~~~~~Cp~C~~~ 743 (754)
+.||+.+..+..|+.. .|.|.-|++= +......+.-+||+|+.+
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 7899999999988877 7999988653 333333344579999864
No 176
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.15 E-value=1.8 Score=43.89 Aligned_cols=95 Identities=16% Similarity=0.302 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 004419 36 RELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVD 115 (754)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 115 (754)
.+....+...++.++...+.+..++.+.......+..+..+...+......+..-...++.+..++-..+..+...+...
T Consensus 263 ~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~k 342 (622)
T COG5185 263 EKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELK 342 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34455556666666666666666666543343444445444555555555555555555555444444444444444444
Q ss_pred hHHHHHHHHHHHHHH
Q 004419 116 QAEIQHLAGELEETM 130 (754)
Q Consensus 116 ~~~l~~l~~~~~~~~ 130 (754)
..++..|+...+.+.
T Consensus 343 Eeei~~L~~~~d~L~ 357 (622)
T COG5185 343 EEEIKALQSNIDELH 357 (622)
T ss_pred HHHHHHHHhhHHHHH
Confidence 444444433333333
No 177
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.004 Score=56.49 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=42.1
Q ss_pred CCccccccccccccc----ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCccc
Q 004419 697 KAILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
...+.|||-+-.|.. .++-+|||+|-..-+.... ...||.|+.+|+..|+..+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIvl 165 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIVL 165 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEee
Confidence 456899998665543 6666999999998888774 4479999999999997654
No 178
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.07 E-value=4.5 Score=47.80 Aligned_cols=38 Identities=11% Similarity=-0.014 Sum_probs=17.8
Q ss_pred cceeccCCCcc--cHHHHHHHhccCCCC--ccc--cCcCcCCCC
Q 004419 711 EVVITKCFHLF--CNPCIQRNLEIRHRK--CPG--CGTAFGQSD 748 (754)
Q Consensus 711 ~~~~~~CgH~f--C~~C~~~~~~~~~~~--Cp~--C~~~~~~~d 748 (754)
.+.++.=|-+| +.++-.......+.. ||. =-.||+.-|
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD 855 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLD 855 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCC
Confidence 33444556655 544444444433333 665 335555443
No 179
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.90 E-value=1.9 Score=42.04 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=5.1
Q ss_pred HHHHHhHHHHHHHH
Q 004419 531 LQQVAERDDLNIKL 544 (754)
Q Consensus 531 ~~~~~~l~~~l~~l 544 (754)
...+..++.+...|
T Consensus 166 q~Klk~LEeEN~~L 179 (306)
T PF04849_consen 166 QEKLKSLEEENEQL 179 (306)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 180
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.89 E-value=0.003 Score=68.23 Aligned_cols=46 Identities=20% Similarity=0.569 Sum_probs=35.2
Q ss_pred ccccccccccc-------cceeccCCCcccHHHHHHHhccCCC-CccccCcCcC
Q 004419 700 LKCGVCFDRPK-------EVVITKCFHLFCNPCIQRNLEIRHR-KCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~-------~~~~~~CgH~fC~~C~~~~~~~~~~-~Cp~C~~~~~ 745 (754)
-.|+||+.... +...-+|.|-|-..|+-.|.....+ .||.||..|.
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 47999987654 1223379999999999999986544 6999997664
No 181
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.0052 Score=55.50 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=31.9
Q ss_pred ccCCcccccccccccccceeccCCCcccHHHHHHHh
Q 004419 695 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNL 730 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~ 730 (754)
.++.-.+|++|..+|.+||++|=||+||..||..++
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 444447999999999999999999999999998876
No 182
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.004 Score=60.35 Aligned_cols=36 Identities=31% Similarity=0.659 Sum_probs=27.7
Q ss_pred eccCCCcccHHHHHHHhccC-C-CCccccCcCcCCCCC
Q 004419 714 ITKCFHLFCNPCIQRNLEIR-H-RKCPGCGTAFGQSDV 749 (754)
Q Consensus 714 ~~~CgH~fC~~C~~~~~~~~-~-~~Cp~C~~~~~~~d~ 749 (754)
+-.|||+|--.|+..|+.+. + +.||.|+.....+.+
T Consensus 23 i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 23 IGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV 60 (465)
T ss_pred ccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence 34699999999999999873 3 589999955554433
No 183
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.0023 Score=62.52 Aligned_cols=42 Identities=29% Similarity=0.566 Sum_probs=34.0
Q ss_pred ceeccCCCcccHHHHHHHhccC-CCCccccCcCcCCCCCcccC
Q 004419 712 VVITKCFHLFCNPCIQRNLEIR-HRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 712 ~~~~~CgH~fC~~C~~~~~~~~-~~~Cp~C~~~~~~~d~~~~~ 753 (754)
-|++.|||.|.+.||..|+-.. ..-||.|......++|++.|
T Consensus 22 ~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 22 IVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred EeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 5678999999999999998421 11399999998888888766
No 184
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.82 E-value=1.9 Score=41.35 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q 004419 436 RAHSQAEVLKN 446 (754)
Q Consensus 436 ~~~~~l~~l~~ 446 (754)
....+.-.+..
T Consensus 123 r~rdEw~~lqd 133 (305)
T PF14915_consen 123 RARDEWVRLQD 133 (305)
T ss_pred HHhhHHHHHHH
Confidence 33333333333
No 185
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.77 E-value=0.011 Score=48.96 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=24.0
Q ss_pred Cccccccccccccccee--ccCCCcccHHHHH
Q 004419 698 AILKCGVCFDRPKEVVI--TKCFHLFCNPCIQ 727 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~--~~CgH~fC~~C~~ 727 (754)
..-.|++|+..+.+.++ .||||.|...|+.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 33579999999876443 3999999999975
No 186
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.65 E-value=2.4 Score=41.37 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=11.4
Q ss_pred HHHHhhhhhhH--HHHHHHHHHHhccC
Q 004419 673 KVAELTSETGE--AAIQKLQDEIKDCK 697 (754)
Q Consensus 673 ~l~~l~~~~~~--~~~~~l~~e~~~~~ 697 (754)
.+..+...+.. +.+...+++++.++
T Consensus 277 EL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 277 ELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333 34445555555554
No 187
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=95.62 E-value=0.0028 Score=67.52 Aligned_cols=53 Identities=28% Similarity=0.707 Sum_probs=42.0
Q ss_pred HhccCCcccccccccccccceeccCCCcccHHHHHHHhccC--CCCccccCcCcC
Q 004419 693 IKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFG 745 (754)
Q Consensus 693 ~~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~--~~~Cp~C~~~~~ 745 (754)
+..+...+.|+||...+..|+.+.|.|.||..|+...+... ...||+|+....
T Consensus 15 i~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 15 INAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred HHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 34444559999999999999999999999999998876643 235999985544
No 188
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.60 E-value=3.1 Score=42.30 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 004419 377 NEQKRLT 383 (754)
Q Consensus 377 ~~~~~~~ 383 (754)
.+..+++
T Consensus 316 ~~~~~mk 322 (622)
T COG5185 316 NYVNAMK 322 (622)
T ss_pred HHHHHHH
Confidence 3333333
No 189
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.56 E-value=2.9 Score=41.75 Aligned_cols=75 Identities=24% Similarity=0.303 Sum_probs=34.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 604 DRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELT 678 (754)
Q Consensus 604 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~ 678 (754)
...+...+.....-+..+..++..+...+..++.+...+..........+-.+-........++..+...+..|.
T Consensus 225 f~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 225 FEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444444444444444444555555555444443
No 190
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.56 E-value=1.4 Score=41.51 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=21.2
Q ss_pred ccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 721 FCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 721 fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
-|.+|-.....+ .+.||.|...--++.
T Consensus 196 ~C~sC~qqIHRN-APiCPlCK~KsRSrn 222 (230)
T PF10146_consen 196 TCQSCHQQIHRN-APICPLCKAKSRSRN 222 (230)
T ss_pred hhHhHHHHHhcC-CCCCcccccccccCC
Confidence 399999988774 778999988766554
No 191
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.55 E-value=2.7 Score=41.41 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 004419 469 QRLSAAEAEIIEL 481 (754)
Q Consensus 469 ~~l~~~~~el~~l 481 (754)
.++.....+...+
T Consensus 16 ~eLe~cq~ErDqy 28 (319)
T PF09789_consen 16 QELEKCQSERDQY 28 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 192
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.38 E-value=0.0096 Score=55.93 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=47.4
Q ss_pred ccCCcccccccccccc---cceeccCCCcccHHHHHHHhccC--CCCccccCcCcCCCCCcccCC
Q 004419 695 DCKAILKCGVCFDRPK---EVVITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~---~~~~~~CgH~fC~~C~~~~~~~~--~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
.+...+.|||-.+--+ -|+.+.|||+.-..-+.....++ ..+||-|-..-...++.++||
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvrf 396 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVRF 396 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcccC
Confidence 3445689999755443 39999999999888888777754 447999999888889999887
No 193
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.32 E-value=0.0047 Score=59.79 Aligned_cols=46 Identities=33% Similarity=0.676 Sum_probs=36.4
Q ss_pred ccccccccccc----cceeccCCCcccHHHHHHHhcc-CCCCccccCcCcC
Q 004419 700 LKCGVCFDRPK----EVVITKCFHLFCNPCIQRNLEI-RHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~----~~~~~~CgH~fC~~C~~~~~~~-~~~~Cp~C~~~~~ 745 (754)
+.|..|++.+. +--.+||.|+|-..|....+.+ ..+.||.||.-.+
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 89999998873 2445799999999999988764 4567999995444
No 194
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.32 E-value=6.6 Score=44.39 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 293 IERLEVQLQKSIIEKNDLGLKMEEA 317 (754)
Q Consensus 293 ~~~~~~~l~~l~~~~~~l~~~l~~~ 317 (754)
...++.++..+..+.......+..+
T Consensus 264 r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 264 REQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544
No 195
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.29 E-value=1.7 Score=40.74 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 651 KELENERNERKKLEEELMEVNNKVAELT 678 (754)
Q Consensus 651 ~~l~~~~~~~~~~~~e~~~~~~~l~~l~ 678 (754)
..+......+.+++.++..++..+++..
T Consensus 102 gQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 102 GQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344445555555555554433
No 196
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.28 E-value=5 Score=42.76 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 578 SAKLRILHAEEQMKACLTEALRYNSEDR 605 (754)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (754)
.....|..++..+......++.+...+.
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555554444444
No 197
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.26 E-value=6.3 Score=43.78 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=17.0
Q ss_pred HHHHHhcc-CCCCccccCcCcCCCCCccc
Q 004419 725 CIQRNLEI-RHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 725 C~~~~~~~-~~~~Cp~C~~~~~~~d~~~~ 752 (754)
.+..|... +.+--|+-+..|-..|+.+.
T Consensus 1210 i~~~y~~q~Phra~~~df~~f~t~d~kr~ 1238 (1243)
T KOG0971|consen 1210 ILKEYVSQRPHRAVPTDFATFPTSDFKRA 1238 (1243)
T ss_pred HHHHHHhcCCCccccCcccccccHHHHHH
Confidence 33444432 45557778888888777654
No 198
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.25 E-value=6.3 Score=43.75 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 004419 431 KESERRAHSQAEVLKNALD 449 (754)
Q Consensus 431 ~~~~~~~~~~l~~l~~~l~ 449 (754)
...+..+-.++..+...+.
T Consensus 332 ~~~~~~~~~e~~~~~~~l~ 350 (980)
T KOG0980|consen 332 ELQIEQLSREVAQLKAQLE 350 (980)
T ss_pred hHHHHHHHHHHHHHhhhhh
Confidence 3344444444444444433
No 199
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.0072 Score=61.93 Aligned_cols=51 Identities=29% Similarity=0.905 Sum_probs=36.8
Q ss_pred cccccccc-ccccc---ceeccCCCcccHHHHHHHhccC-----CCCccc--cCcCcCCCCC
Q 004419 699 ILKCGVCF-DRPKE---VVITKCFHLFCNPCIQRNLEIR-----HRKCPG--CGTAFGQSDV 749 (754)
Q Consensus 699 ~~~C~iC~-~~~~~---~~~~~CgH~fC~~C~~~~~~~~-----~~~Cp~--C~~~~~~~d~ 749 (754)
...|.||+ +.+.. ..+..|||.||..|...++..+ ...||+ |...+...+.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHH
Confidence 46899998 33322 2366899999999999988743 446988 7777766543
No 200
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.05 E-value=2.9 Score=38.76 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHhhh
Q 004419 471 LSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQT---QNQHLLQQVAERDDLNIKLVSE 547 (754)
Q Consensus 471 l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~---~~~~~~~~~~~l~~~l~~l~~e 547 (754)
|..+..++..++.........+.++..+...+..-+..+..++..+...+..+.. .+..+...+..++..+..+.-+
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444443332 2334444555555555555555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 004419 548 SVKTKQVQSFLLSEKQALARQLQ 570 (754)
Q Consensus 548 ~~~~~~~~~~l~~e~~~l~~~l~ 570 (754)
-..+...+..+..+.+.+.....
T Consensus 109 ~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 109 HEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544433
No 201
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.05 E-value=2 Score=36.81 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 004419 659 ERKKLEEELMEVNNKVAELTSET 681 (754)
Q Consensus 659 ~~~~~~~e~~~~~~~l~~l~~~~ 681 (754)
....++.++..+..++..|...|
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777666
No 202
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.01 E-value=0.063 Score=61.14 Aligned_cols=47 Identities=28% Similarity=0.549 Sum_probs=39.5
Q ss_pred Ccccccccccccc-cceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 698 AILKCGVCFDRPK-EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 698 ~~~~C~iC~~~~~-~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
....|++|.+... ...+..|||.||..|...|.. ....||.|...+.
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhhhh
Confidence 3369999999998 467779999999999999998 4778999985443
No 203
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.97 E-value=0.024 Score=40.06 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=34.6
Q ss_pred cccccccccc----ccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcc
Q 004419 700 LKCGVCFDRP----KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 751 (754)
Q Consensus 700 ~~C~iC~~~~----~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~ 751 (754)
..|..|-..+ .+..+..=-|+||..|....+. ..||.|+..+..+-+++
T Consensus 6 PnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~---g~CPnCGGelv~RP~RP 58 (84)
T COG3813 6 PNCECCDRDLPPDSTDARICTFECTFCADCAENRLH---GLCPNCGGELVARPIRP 58 (84)
T ss_pred CCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc---CcCCCCCchhhcCcCCh
Confidence 4677775433 2344445578999999998754 36999999888776654
No 204
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.02 Score=50.94 Aligned_cols=47 Identities=21% Similarity=0.528 Sum_probs=38.5
Q ss_pred cccccccccc--ccceeccCCCcccHHHHHHHhcc-------CCCCccccCcCcCC
Q 004419 700 LKCGVCFDRP--KEVVITKCFHLFCNPCIQRNLEI-------RHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~--~~~~~~~CgH~fC~~C~~~~~~~-------~~~~Cp~C~~~~~~ 746 (754)
..|.+|.... .+++.+.|.|+|--.|+..|..+ ++..||.|...+-+
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 5899998876 56889999999999999998764 34469999877654
No 205
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.70 E-value=0.028 Score=52.57 Aligned_cols=48 Identities=23% Similarity=0.476 Sum_probs=36.1
Q ss_pred cccccccccccc---ceeccCCCcccHHHHHHHhcc----------------------CCCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEI----------------------RHRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~----------------------~~~~Cp~C~~~~~~~ 747 (754)
..|.||.=.|.+ -+.|+|.|.|-+.|+.+++.- ...-||+||.++...
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 589999877754 346699999999999888742 122399999888654
No 206
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.65 E-value=9.2 Score=42.59 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 004419 75 KIDDMMKEEAKNLHEVMEIIHLK 97 (754)
Q Consensus 75 ~~~~~l~~~~~~l~~~~~~l~~~ 97 (754)
.....++.+...++.++.+++..
T Consensus 69 ~~~~~~e~~~~~lr~e~ke~K~r 91 (717)
T PF09730_consen 69 KECEDLELERKRLREEIKEYKFR 91 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 207
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.60 E-value=0.012 Score=62.42 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=31.8
Q ss_pred cccccccccccc----ceec---cCCCcccHHHHHHHhccC-----CCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKE----VVIT---KCFHLFCNPCIQRNLEIR-----HRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~----~~~~---~CgH~fC~~C~~~~~~~~-----~~~Cp~C~~~~~~ 746 (754)
.+|++|-.-|.+ .-+. .|||.||..||.+|...- ...||+|..||+.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 355555444433 2233 499999999999998741 2248889988864
No 208
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.014 Score=54.73 Aligned_cols=42 Identities=24% Similarity=0.541 Sum_probs=30.5
Q ss_pred ccccccccccc-cceeccCCCcccHHHHHHHhccCCCCccccCcCc
Q 004419 700 LKCGVCFDRPK-EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 700 ~~C~iC~~~~~-~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
..|--|..... .-..+||.|+||..|.... ...-||.|-..+
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcC---ccccCcCcccHH
Confidence 57877855443 2446699999999998875 355699997544
No 209
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.47 E-value=5.9 Score=39.59 Aligned_cols=13 Identities=46% Similarity=0.603 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 004419 652 ELENERNERKKLE 664 (754)
Q Consensus 652 ~l~~~~~~~~~~~ 664 (754)
.+..+...+.+++
T Consensus 287 ~~~~~~~k~~kLe 299 (309)
T PF09728_consen 287 ELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 210
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=94.41 E-value=0.0094 Score=58.20 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=32.5
Q ss_pred cccccccccccccceec----cCC--CcccHHHHHHHhccCCCCccccCcC
Q 004419 699 ILKCGVCFDRPKEVVIT----KCF--HLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~----~Cg--H~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
...||||+....-.++. .=| |.+|+-|-..|.- +..+||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCCC
Confidence 35899999887654433 234 4569999999977 46689999974
No 211
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.16 Score=51.01 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=36.2
Q ss_pred ccccccccccc-c-----ceecc--------CCCcccHHHHHHHhccCCCCccccCcC
Q 004419 700 LKCGVCFDRPK-E-----VVITK--------CFHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 700 ~~C~iC~~~~~-~-----~~~~~--------CgH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
..|.+|...|. + |.++. |||+.|..|+...+.....+||.|+.+
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 47899977775 2 55556 999999999999988777899999975
No 212
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.38 E-value=0.016 Score=49.05 Aligned_cols=18 Identities=28% Similarity=1.014 Sum_probs=16.8
Q ss_pred ccccccccccccceeccC
Q 004419 700 LKCGVCFDRPKEVVITKC 717 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~C 717 (754)
.+|||||+.+-++|+|.|
T Consensus 3 ~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 3 VTCPICMEHPHNAVLLLC 20 (162)
T ss_pred ccCceeccCCCceEEEEe
Confidence 689999999999999977
No 213
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=94.34 E-value=0.032 Score=55.61 Aligned_cols=33 Identities=30% Similarity=0.746 Sum_probs=26.9
Q ss_pred cccHHHHHHHhccCC------------CCccccCcCcCCCCCccc
Q 004419 720 LFCNPCIQRNLEIRH------------RKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 720 ~fC~~C~~~~~~~~~------------~~Cp~C~~~~~~~d~~~~ 752 (754)
+.|-+|+-.|+..|+ ..||+||.+|=..||..|
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV~~v 358 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDVCYV 358 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeeeecC
Confidence 559999999997653 359999999999998754
No 214
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.24 E-value=9.9 Score=41.30 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcc
Q 004419 425 RDLMEIKESERRAHSQAEVLKNALD 449 (754)
Q Consensus 425 ~~~~~l~~~~~~~~~~l~~l~~~l~ 449 (754)
....++..++..+..+.+.+..++.
T Consensus 471 p~~~dL~~ELqqLReERdRl~aeLq 495 (739)
T PF07111_consen 471 PSVTDLSLELQQLREERDRLDAELQ 495 (739)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888887777777654
No 215
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.029 Score=59.44 Aligned_cols=53 Identities=30% Similarity=0.766 Sum_probs=42.1
Q ss_pred Cccccccccccccc-ceeccCCCcccHHHHHHHhccC-----C--CCccc--cCcCcCCCCCc
Q 004419 698 AILKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIR-----H--RKCPG--CGTAFGQSDVR 750 (754)
Q Consensus 698 ~~~~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~-----~--~~Cp~--C~~~~~~~d~~ 750 (754)
....|.||+..+.. .+.+.|||.||..|...++... . .+||. |...++..+|.
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~ 131 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVE 131 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceee
Confidence 44799999999986 7777999999999999988752 1 36887 88887776654
No 216
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=94.08 E-value=0.044 Score=39.88 Aligned_cols=47 Identities=26% Similarity=0.629 Sum_probs=22.2
Q ss_pred cccccccccccc----ceec---cCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKE----VVIT---KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~----~~~~---~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
-.|.||++...- .+.. -|+-..|.+|..--.+.+..-||.|+.++..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 589999887632 2222 5777789999999888888889999988763
No 217
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.06 E-value=1 Score=41.66 Aligned_cols=27 Identities=19% Similarity=-0.009 Sum_probs=10.2
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 004419 539 DLNIKLVSESVKTKQVQSFLLSEKQAL 565 (754)
Q Consensus 539 ~~l~~l~~e~~~~~~~~~~l~~e~~~l 565 (754)
.++..+......++..+..+..+...+
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344443333
No 218
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=94.00 E-value=0.033 Score=52.45 Aligned_cols=48 Identities=8% Similarity=-0.117 Sum_probs=39.0
Q ss_pred hccCCcccccccccccccceeccCCC-cccHHHHHHHhccCCCCccccCcCc
Q 004419 694 KDCKAILKCGVCFDRPKEVVITKCFH-LFCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~~~~~~CgH-~fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
+.+..-+.|.+|+...-.++..+||| +||-.|.... -...||+|....
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s---~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASAS---ASPTSSTCDHND 386 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhhcc---cCCccccccccc
Confidence 45556689999999998899999999 7899999844 466899997643
No 219
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=93.99 E-value=0.026 Score=36.49 Aligned_cols=43 Identities=30% Similarity=0.771 Sum_probs=24.6
Q ss_pred ccccccccccccceeccC-CCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPKEVVITKC-FHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~C-gH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
+.|..|- |.+.-.+.| .|-.|-.|+...+. +...||+|+.++-
T Consensus 3 ~nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LP 46 (50)
T PF03854_consen 3 YNCKSCW--FANKGLIKCSDHYLCLNCLTLMLS-RSDRCPICGKPLP 46 (50)
T ss_dssp ----SS---S--SSEEE-SS-EEEHHHHHHT-S-SSSEETTTTEE--
T ss_pred ccChhhh--hcCCCeeeecchhHHHHHHHHHhc-cccCCCcccCcCc
Confidence 3566562 334446677 56779999999888 5778999998764
No 220
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.94 E-value=0.028 Score=45.00 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=17.3
Q ss_pred ccccccccceeccCCCcccHHH
Q 004419 704 VCFDRPKEVVITKCFHLFCNPC 725 (754)
Q Consensus 704 iC~~~~~~~~~~~CgH~fC~~C 725 (754)
||...-...+...|||.||..-
T Consensus 62 i~qs~~~rv~rcecghsf~d~r 83 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDYR 83 (165)
T ss_pred EEecccccEEEEeccccccChh
Confidence 5777777777779999999754
No 221
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.74 E-value=5.6 Score=36.71 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004419 658 NERKKLEEELMEVNNKV 674 (754)
Q Consensus 658 ~~~~~~~~e~~~~~~~l 674 (754)
..+.+.+..+..+...+
T Consensus 168 a~lkk~e~~~~SLe~~L 184 (207)
T PF05010_consen 168 ASLKKEEMKVQSLEESL 184 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333343334333333
No 222
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.72 E-value=3.5 Score=34.25 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004419 428 MEIKESERRAHSQAEVLKN 446 (754)
Q Consensus 428 ~~l~~~~~~~~~~l~~l~~ 446 (754)
..+...++.++.++..++.
T Consensus 19 e~L~s~lr~~E~E~~~l~~ 37 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQE 37 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 223
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=93.64 E-value=0.0071 Score=43.42 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=21.8
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
+.||.|...+.-. . ||.+|..|-..+.. ...||.|+.++.
T Consensus 2 ~~CP~C~~~L~~~-~---~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ-G---GHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE-T---TEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CcCCCCCCccEEe-C---CEEECcccccccee--cccCCCcccHHH
Confidence 6899998775422 1 78889999886543 446888887654
No 224
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=93.58 E-value=0.013 Score=32.15 Aligned_cols=23 Identities=30% Similarity=0.866 Sum_probs=14.6
Q ss_pred ccHHHHHHHhccCCCCccccCcCc
Q 004419 721 FCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 721 fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
||..|...... ...+||.|+.+|
T Consensus 1 ~Cp~CG~~~~~-~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIED-DAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCC-cCcchhhhCCcC
Confidence 46666665544 466788887764
No 225
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.55 E-value=16 Score=41.46 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 98 HKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRK 139 (754)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~ 139 (754)
+.++......++..+..-...+..+...++.+..+++....+
T Consensus 183 L~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer 224 (1072)
T KOG0979|consen 183 LMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER 224 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444445555555555555555544444
No 226
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=93.37 E-value=0.026 Score=55.18 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=32.2
Q ss_pred cccccccccccccceec---cCCC--cccHHHHHHHhccCCCCccccCc
Q 004419 699 ILKCGVCFDRPKEVVIT---KCFH--LFCNPCIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~---~CgH--~fC~~C~~~~~~~~~~~Cp~C~~ 742 (754)
...||||+....-.++. .=|+ .+|+-|-..|.- +..+||.|+.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-VRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 47899999887655442 3344 559999999977 4668999996
No 227
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=93.20 E-value=0.053 Score=61.62 Aligned_cols=46 Identities=30% Similarity=0.652 Sum_probs=34.1
Q ss_pred ccccccccc-cc--cceeccCCCcccHHHHHHHhccCCC---------CccccCcCcC
Q 004419 700 LKCGVCFDR-PK--EVVITKCFHLFCNPCIQRNLEIRHR---------KCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~-~~--~~~~~~CgH~fC~~C~~~~~~~~~~---------~Cp~C~~~~~ 745 (754)
-.|-||+.. .. ..+.+.|||+|-..|+...+.+||. .||.|..++.
T Consensus 3487 DmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3487 DMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 457777543 32 2556699999999999988887643 4999998764
No 228
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.06 E-value=16 Score=39.91 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 004419 32 HSSARELMKFIEEVIDAQRVKTKSIAEAFHE 62 (754)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 62 (754)
..........+...+..++.++...+..+..
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555555554
No 229
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=93.05 E-value=0.02 Score=56.85 Aligned_cols=43 Identities=30% Similarity=0.481 Sum_probs=22.9
Q ss_pred ccccccccccccceecc-----CCCcccHHHHHHHhccCCCCccccCcC
Q 004419 700 LKCGVCFDRPKEVVITK-----CFHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~-----CgH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
..||||+....-.++.+ -.|.+|+-|-..|.-. ...||.|+..
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCC
Confidence 68999998876655553 2456799999999774 5579999865
No 230
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.94 E-value=0.044 Score=51.31 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=31.7
Q ss_pred CCcccccccccccccceec-cCCCc------ccHHHH--HHHhccCCCCccccCcCcCCCCCccc
Q 004419 697 KAILKCGVCFDRPKEVVIT-KCFHL------FCNPCI--QRNLEIRHRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~~~~~-~CgH~------fC~~C~--~~~~~~~~~~Cp~C~~~~~~~d~~~~ 752 (754)
.....||||...|+...+. .=+.+ ||..=. ....- ....||+|+=.+...|+..+
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y-~V~vCP~CgyA~~~~~F~~l 66 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFY-EVWVCPHCGYAAFEEDFEKL 66 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeee-eEEECCCCCCcccccccccC
Confidence 3568999999999763332 22221 232211 11111 23359999999988876543
No 231
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.71 E-value=20 Score=40.10 Aligned_cols=8 Identities=38% Similarity=0.497 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 004419 687 QKLQDEIK 694 (754)
Q Consensus 687 ~~l~~e~~ 694 (754)
..++..+.
T Consensus 599 q~lq~al~ 606 (980)
T KOG0980|consen 599 QALQNALY 606 (980)
T ss_pred HHHHHHHH
Confidence 33333333
No 232
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=92.70 E-value=0.027 Score=32.17 Aligned_cols=24 Identities=29% Similarity=0.939 Sum_probs=14.8
Q ss_pred cccHHHHHHHhccCCCCccccCcCc
Q 004419 720 LFCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 720 ~fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
++|..|... .....++||.|+.++
T Consensus 3 ~~Cp~Cg~~-~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAE-IDPDAKFCPNCGAKL 26 (26)
T ss_pred CCCcccCCc-CCcccccChhhCCCC
Confidence 356666663 333567788888764
No 233
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.69 E-value=0.063 Score=44.50 Aligned_cols=33 Identities=33% Similarity=0.686 Sum_probs=27.1
Q ss_pred ccccccccccccc---ceeccCCC------cccHHHHHHHhc
Q 004419 699 ILKCGVCFDRPKE---VVITKCFH------LFCNPCIQRNLE 731 (754)
Q Consensus 699 ~~~C~iC~~~~~~---~~~~~CgH------~fC~~C~~~~~~ 731 (754)
...|.||++...+ .|.++||- +||..|+.+|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 4789999988765 66779985 799999999943
No 234
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.66 E-value=0.12 Score=33.75 Aligned_cols=39 Identities=23% Similarity=0.621 Sum_probs=23.9
Q ss_pred ccccccccccceecc---CCCcccHHHHHHHhccCCC-Ccccc
Q 004419 702 CGVCFDRPKEVVITK---CFHLFCNPCIQRNLEIRHR-KCPGC 740 (754)
Q Consensus 702 C~iC~~~~~~~~~~~---CgH~fC~~C~~~~~~~~~~-~Cp~C 740 (754)
|.+|.+.....+.-+ |+=.+=..|+..++..+.. +||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888877665554 8888889999999987655 59998
No 235
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.65 E-value=13 Score=37.76 Aligned_cols=13 Identities=8% Similarity=0.429 Sum_probs=5.7
Q ss_pred HHHHHHHHHhccC
Q 004419 685 AIQKLQDEIKDCK 697 (754)
Q Consensus 685 ~~~~l~~e~~~~~ 697 (754)
.+..++..++.+.
T Consensus 277 Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 277 EVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 236
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=92.59 E-value=0.11 Score=35.16 Aligned_cols=39 Identities=31% Similarity=0.552 Sum_probs=22.6
Q ss_pred ccccccccccc-------eec---cCCCcccHHHHHHHhccCCCCccccC
Q 004419 702 CGVCFDRPKEV-------VIT---KCFHLFCNPCIQRNLEIRHRKCPGCG 741 (754)
Q Consensus 702 C~iC~~~~~~~-------~~~---~CgH~fC~~C~~~~~~~~~~~Cp~C~ 741 (754)
|--|...|..+ ... .|++.||..|---... ....||.|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE-~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHE-TLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTT-TS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhc-cccCCcCCC
Confidence 55666666553 122 6899999999775555 477899994
No 237
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.16 E-value=18 Score=38.43 Aligned_cols=13 Identities=23% Similarity=0.210 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHhH
Q 004419 477 EIIELVAKLDASE 489 (754)
Q Consensus 477 el~~l~~~~~~~~ 489 (754)
++..+..++..+.
T Consensus 82 ~l~~l~~~~~~l~ 94 (423)
T TIGR01843 82 DAAELESQVLRLE 94 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444433333
No 238
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.83 E-value=0.059 Score=50.20 Aligned_cols=36 Identities=33% Similarity=0.764 Sum_probs=28.6
Q ss_pred CCCcccHHHHHHHhccC------------CCCccccCcCcCCCCCccc
Q 004419 717 CFHLFCNPCIQRNLEIR------------HRKCPGCGTAFGQSDVRFV 752 (754)
Q Consensus 717 CgH~fC~~C~~~~~~~~------------~~~Cp~C~~~~~~~d~~~~ 752 (754)
|.-+.|.+|+-.|.-.| .-.||+||+.|-..|++.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~v 372 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHCV 372 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeEE
Confidence 45567899999987543 3459999999999998876
No 239
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.80 E-value=25 Score=40.78 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhHhhH
Q 004419 476 AEIIELVAKLDASERDV 492 (754)
Q Consensus 476 ~el~~l~~~~~~~~~~~ 492 (754)
.++..++.++...+..+
T Consensus 201 ~ql~~l~~~l~~aE~~l 217 (754)
T TIGR01005 201 PEIADLSKQSRDAEAEV 217 (754)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 240
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=91.73 E-value=0.15 Score=42.58 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=28.9
Q ss_pred ccccccccccccc-----ceeccCCCcccHHHHHHHhccCCCCccccCc
Q 004419 699 ILKCGVCFDRPKE-----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 699 ~~~C~iC~~~~~~-----~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~ 742 (754)
...|.+|..+|.- .+...|+|.+|..|.......+.-.|.+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 3689999887632 4455899999999988732223335888863
No 241
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=1 Score=44.44 Aligned_cols=45 Identities=22% Similarity=0.542 Sum_probs=37.3
Q ss_pred ccccccccccc----ceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 701 KCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 701 ~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
.|.||+..++. ..-+.|||.+-..|+..|+.. .++||.|+..+..
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPK 246 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhh
Confidence 68999877654 455699999999999999997 7899999976654
No 242
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=91.62 E-value=0.095 Score=40.16 Aligned_cols=37 Identities=22% Similarity=0.598 Sum_probs=28.4
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
-.|.+|......+ ||.||..|-. ....|++|+..+..
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAY-----kkGiCamCGKki~d 81 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAY-----KKGICAMCGKKILD 81 (90)
T ss_pred ccccccccccccC-----CCccChhhhc-----ccCcccccCCeecc
Confidence 3788886665554 9999999976 34579999998843
No 243
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.54 E-value=22 Score=38.13 Aligned_cols=11 Identities=0% Similarity=0.145 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 004419 234 YNLVNDQLQHW 244 (754)
Q Consensus 234 ~~~~~~~~~~l 244 (754)
+..++.++..+
T Consensus 68 lK~yQ~EiD~L 78 (629)
T KOG0963|consen 68 LKSYQSEIDNL 78 (629)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 244
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.50 E-value=5.2 Score=40.13 Aligned_cols=72 Identities=24% Similarity=0.321 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004419 610 NLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSET 681 (754)
Q Consensus 610 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~~~~ 681 (754)
++..+..+...+..++..+..+...+.......-...+....++.........+...+......++.|...+
T Consensus 65 eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 65 ELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333333333333333333333333344444444444555555555566666666666666666544
No 245
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=91.42 E-value=37 Score=40.40 Aligned_cols=32 Identities=13% Similarity=0.033 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004419 250 RYKALTDSLLIDRSLVLRREKEINVRAESADA 281 (754)
Q Consensus 250 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 281 (754)
.+...+..++.++...+..+..+......+..
T Consensus 635 ~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k 666 (1294)
T KOG0962|consen 635 EYLDLLERLKGEIEKARKDLAMLQGRSALYRK 666 (1294)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 33444444444444444444444444333333
No 246
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.35 E-value=30 Score=39.22 Aligned_cols=6 Identities=17% Similarity=-0.280 Sum_probs=2.4
Q ss_pred CcccCC
Q 004419 749 VRFVKI 754 (754)
Q Consensus 749 ~~~~~~ 754 (754)
|.+-||
T Consensus 645 i~~gYf 650 (650)
T TIGR03185 645 VTEGYF 650 (650)
T ss_pred ecCCCC
Confidence 334443
No 247
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.17 E-value=26 Score=38.24 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhHhhHHH
Q 004419 475 EAEIIELVAKLDASERDVME 494 (754)
Q Consensus 475 ~~el~~l~~~~~~~~~~~~~ 494 (754)
..++..++.++...+..+..
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333
No 248
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=91.00 E-value=0.069 Score=37.88 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=25.0
Q ss_pred cccccccccccc----ceeccCCCcccHHHHHHHhcc
Q 004419 700 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEI 732 (754)
Q Consensus 700 ~~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~ 732 (754)
..|++|...|.- .--..||++||..|.......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeeec
Confidence 468999887754 222379999999999987664
No 249
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=90.98 E-value=29 Score=38.46 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=13.8
Q ss_pred HHHhhHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 004419 402 KLQKDKLESQIMLDMYGQEGRDPRDLMEIKESER 435 (754)
Q Consensus 402 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 435 (754)
.....+..++..++.++.....+.+...|..+..
T Consensus 186 ~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~ 219 (563)
T TIGR00634 186 ELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQ 219 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHH
Confidence 3333334444444444444444443344444433
No 250
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=90.97 E-value=0.064 Score=30.48 Aligned_cols=12 Identities=42% Similarity=1.065 Sum_probs=7.7
Q ss_pred CCCccccCcCcC
Q 004419 734 HRKCPGCGTAFG 745 (754)
Q Consensus 734 ~~~Cp~C~~~~~ 745 (754)
...||+|+..|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 455777776664
No 251
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.80 E-value=20 Score=36.32 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhhhhh
Q 004419 665 EELMEVNNKVAELTSET 681 (754)
Q Consensus 665 ~e~~~~~~~l~~l~~~~ 681 (754)
.++..++..+..|....
T Consensus 276 ~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555554443
No 252
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.78 E-value=25 Score=37.37 Aligned_cols=10 Identities=30% Similarity=0.435 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 004419 662 KLEEELMEVN 671 (754)
Q Consensus 662 ~~~~e~~~~~ 671 (754)
.++..+..+.
T Consensus 257 ~~~~~l~~~~ 266 (423)
T TIGR01843 257 ELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 253
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.46 E-value=16 Score=34.56 Aligned_cols=13 Identities=46% Similarity=0.726 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 004419 659 ERKKLEEELMEVN 671 (754)
Q Consensus 659 ~~~~~~~e~~~~~ 671 (754)
...+++.++..+.
T Consensus 177 erkrle~e~k~lq 189 (307)
T PF10481_consen 177 ERKRLEAEVKALQ 189 (307)
T ss_pred HHhhHHHHHHHHh
Confidence 4455555555554
No 254
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.29 E-value=25 Score=36.59 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 505 EAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAK 580 (754)
Q Consensus 505 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~ 580 (754)
.+..+..++......+....+.+..+..++.++++++.-+..+...+..-+......-..+..++..++.+.....
T Consensus 213 q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m 288 (596)
T KOG4360|consen 213 QARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECM 288 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444555555555544444444444443333333333334444444433333333
No 255
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=90.19 E-value=0.019 Score=42.75 Aligned_cols=33 Identities=15% Similarity=0.457 Sum_probs=17.5
Q ss_pred cccccccccccccce----eccCCCcccHHHHHHHhc
Q 004419 699 ILKCGVCFDRPKEVV----ITKCFHLFCNPCIQRNLE 731 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~----~~~CgH~fC~~C~~~~~~ 731 (754)
...|.+|...|.-.. --.||++||..|......
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 368999999984311 116999999999986654
No 256
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=90.07 E-value=7.2 Score=36.63 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=36.4
Q ss_pred cccccccccccccceec-cCCCcccHHHHHHHhcc-CCCCccc--cCcCcC
Q 004419 699 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEI-RHRKCPG--CGTAFG 745 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~-~~~~Cp~--C~~~~~ 745 (754)
.++||+-+..+.+|++. .|||+|=..=|..+... +...||+ |-.+..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~ 226 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYY 226 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCcccc
Confidence 37999999999888777 89999998888888763 2446999 763343
No 257
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.97 E-value=23 Score=35.60 Aligned_cols=77 Identities=17% Similarity=0.400 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCccccccccccccc----ceecc--CCCccc
Q 004419 649 MRKELENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKE----VVITK--CFHLFC 722 (754)
Q Consensus 649 ~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~e~~~~~~~~~C~iC~~~~~~----~~~~~--CgH~fC 722 (754)
+...+...++--.++..++..++..+....-.... ....++.+ .-.|+.|-..|.. |-.++ ||.+||
T Consensus 425 ~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~-le~ql~~~------ve~c~~~~aS~~slk~e~erl~qq~eqi~~ 497 (542)
T KOG0993|consen 425 LQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQE-LEWQLDDD------VEQCSNCDASFASLKVEPERLHQQCEQIFC 497 (542)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444445556666666666655543332222 11111212 1368888777644 33333 999999
Q ss_pred HHHHHHHhcc
Q 004419 723 NPCIQRNLEI 732 (754)
Q Consensus 723 ~~C~~~~~~~ 732 (754)
..|.......
T Consensus 498 ~~~~Katvp~ 507 (542)
T KOG0993|consen 498 MNCLKATVPS 507 (542)
T ss_pred HhHHHhhccc
Confidence 9999987654
No 258
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=89.93 E-value=0.3 Score=43.57 Aligned_cols=48 Identities=23% Similarity=0.555 Sum_probs=36.7
Q ss_pred cccccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
...|.+|....-..+.. .||-.+-.+|+.+.... ..-||+|+-.|.-.
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h~ 229 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTHP 229 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCcc
Confidence 35899998776655544 67777888999999984 66799999887643
No 259
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.92 E-value=8.4 Score=38.66 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=2.2
Q ss_pred cCcCcC
Q 004419 740 CGTAFG 745 (754)
Q Consensus 740 C~~~~~ 745 (754)
.+..++
T Consensus 271 ~~~~I~ 276 (314)
T PF04111_consen 271 DKDKIG 276 (314)
T ss_dssp CTTEEC
T ss_pred cCCccC
Confidence 333333
No 260
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.66 E-value=22 Score=34.89 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHh
Q 004419 432 ESERRAHSQAEVLKN 446 (754)
Q Consensus 432 ~~~~~~~~~l~~l~~ 446 (754)
..+..+..++..|..
T Consensus 52 ~~l~~L~~d~~~L~~ 66 (264)
T PF06008_consen 52 KELESLEQDVENLQE 66 (264)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 261
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.39 E-value=23 Score=34.75 Aligned_cols=7 Identities=29% Similarity=0.416 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 004419 624 ELKWLKS 630 (754)
Q Consensus 624 ~~~~l~~ 630 (754)
.+.+++.
T Consensus 193 kL~Dl~~ 199 (264)
T PF06008_consen 193 KLQDLRD 199 (264)
T ss_pred HHHHHHH
Confidence 3333333
No 262
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.29 E-value=49 Score=38.42 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004419 467 CQQRLSAAEAEIIELVA 483 (754)
Q Consensus 467 ~~~~l~~~~~el~~l~~ 483 (754)
+..++...+..+..++.
T Consensus 206 l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 206 LSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444444433
No 263
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.21 E-value=5.6 Score=35.99 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=47.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004419 607 LAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSET 681 (754)
Q Consensus 607 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~~~~ 681 (754)
+......++..+.++..+..++...+..++.++...+..+..+..+...++....++..++..++.+++.|.+..
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 334444445555555555555556666666666666666666666666666667777777777777777777653
No 265
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=89.16 E-value=33 Score=36.24 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 004419 405 KDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKN 446 (754)
Q Consensus 405 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ 446 (754)
+++..|+.-+..+......... ..+...+..+..++.....
T Consensus 229 ~ql~~Lk~Gyr~m~~~gY~l~~-~~id~~~~~L~~~l~~~~~ 269 (570)
T COG4477 229 GQLQDLKAGYRDMKEEGYHLEH-VNIDSRLERLKEQLVENSE 269 (570)
T ss_pred HHHHHHHHHHHHHHHccCCccc-ccHHHHHHHHHHHHHHHHh
Confidence 4444444444444333333322 2444445555544444443
No 266
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=89.01 E-value=0.15 Score=35.55 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=27.8
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhcc-CCCCccccCcCcCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI-RHRKCPGCGTAFGQ 746 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~-~~~~Cp~C~~~~~~ 746 (754)
.+.||.|+..|.. ..++..|....... ....||+|...++.
T Consensus 2 ~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~~~~~ 43 (54)
T PF05605_consen 2 SFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSSRVTD 43 (54)
T ss_pred CcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchhhhhh
Confidence 4789999886652 24566666665543 24569999987664
No 267
>PRK04023 DNA polymerase II large subunit; Validated
Probab=88.37 E-value=0.18 Score=56.21 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=32.5
Q ss_pred ccccccccccccceeccCCC-----cccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPKEVVITKCFH-----LFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH-----~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
..|+-|+........-.||. .||..|.... ....||.|+....+..
T Consensus 627 RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~---~~y~CPKCG~El~~~s 677 (1121)
T PRK04023 627 RKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEV---EEDECEKCGREPTPYS 677 (1121)
T ss_pred ccCCCCCCcCCcccCCCCCCCCCcceeCccccCcC---CCCcCCCCCCCCCccc
Confidence 58999987753333335985 5899995543 3356999998877654
No 268
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=88.13 E-value=0.34 Score=46.39 Aligned_cols=42 Identities=21% Similarity=0.591 Sum_probs=35.2
Q ss_pred cccccccc----ccccceeccCCCcccHHHHHHHhccCCCCccccCc
Q 004419 700 LKCGVCFD----RPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 700 ~~C~iC~~----~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~ 742 (754)
..||+|.+ .+..+..++|||.-=..|.....-.+ -.||.|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 56999954 34568888999999899999888866 88999988
No 269
>PF14353 CpXC: CpXC protein
Probab=87.68 E-value=0.45 Score=40.61 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=25.6
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhcc--CCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI--RHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~--~~~~Cp~C~~~~~~ 746 (754)
++||.|+..|.-.+-+.-.=..=..=....+.. -...||.|+..|..
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 689999887765444322222222222333221 13359999988864
No 270
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.67 E-value=24 Score=32.81 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=9.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 004419 604 DRHLAVNLETTKWELADAEKELKWL 628 (754)
Q Consensus 604 ~~~~~~~~~~~~~~~~~l~~~~~~l 628 (754)
+..+.-+.+.+...+..+..+..++
T Consensus 102 l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 102 LKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 271
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.65 E-value=56 Score=37.15 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 004419 596 EALRYNSEDRHLAVNLETTKWEL 618 (754)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~ 618 (754)
++..+...+..+...++.++..+
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334443333333
No 272
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.51 E-value=22 Score=36.35 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004419 180 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND 224 (754)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l~~~l~~ 224 (754)
.......+...+........-+..+...+..+..+++..+.++++
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555555555555555555555544
No 273
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=87.39 E-value=0.3 Score=39.53 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=7.3
Q ss_pred Ccccccccccccc
Q 004419 698 AILKCGVCFDRPK 710 (754)
Q Consensus 698 ~~~~C~iC~~~~~ 710 (754)
....|+-|+..|.
T Consensus 8 tKR~Cp~CG~kFY 20 (108)
T PF09538_consen 8 TKRTCPSCGAKFY 20 (108)
T ss_pred CcccCCCCcchhc
Confidence 3456666666553
No 274
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=87.27 E-value=0.18 Score=49.95 Aligned_cols=49 Identities=18% Similarity=0.343 Sum_probs=0.0
Q ss_pred cccccccccc--c------------cc-----ceeccCCCcccHHHHHHHhccCC--------CCccccCcCcCCC
Q 004419 699 ILKCGVCFDR--P------------KE-----VVITKCFHLFCNPCIQRNLEIRH--------RKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~--~------------~~-----~~~~~CgH~fC~~C~~~~~~~~~--------~~Cp~C~~~~~~~ 747 (754)
...||+|... | .+ -+..||||+.-..+..-|..... .-||+|..++...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 4799999643 1 11 34459999988888888876532 2499999998753
No 275
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.72 E-value=2.5 Score=34.58 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=12.8
Q ss_pred Cccccccccc-ccccceeccCCCc
Q 004419 698 AILKCGVCFD-RPKEVVITKCFHL 720 (754)
Q Consensus 698 ~~~~C~iC~~-~~~~~~~~~CgH~ 720 (754)
...+|-||.. .|.+ .|||.
T Consensus 64 ddatC~IC~KTKFAD----G~GH~ 83 (169)
T KOG3799|consen 64 DDATCGICHKTKFAD----GCGHN 83 (169)
T ss_pred cCcchhhhhhccccc----ccCcc
Confidence 3469999964 4654 57774
No 276
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=86.67 E-value=0.16 Score=40.24 Aligned_cols=14 Identities=43% Similarity=0.785 Sum_probs=10.6
Q ss_pred ceeccCCCcccHHH
Q 004419 712 VVITKCFHLFCNPC 725 (754)
Q Consensus 712 ~~~~~CgH~fC~~C 725 (754)
.|...|||-||..=
T Consensus 24 ~vkc~CGh~f~d~r 37 (112)
T PF08882_consen 24 VVKCDCGHEFCDAR 37 (112)
T ss_pred eeeccCCCeecChh
Confidence 55558999999753
No 277
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=86.52 E-value=0.31 Score=45.63 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=32.4
Q ss_pred CCcccccccccccccceec-c---CCCcc--cHHHHHHHhccCCCCccccCcC
Q 004419 697 KAILKCGVCFDRPKEVVIT-K---CFHLF--CNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~~~~~-~---CgH~f--C~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
+...-||+|+..+...++. . =|-.| |+-|-..|.-. ..||-+|+..
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~V-R~KC~nC~~t 234 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYV-RVKCSNCEQS 234 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHH-HHHhcccccc
Confidence 3446899998877654333 2 23344 99999999884 5689999753
No 278
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.52 E-value=35 Score=33.55 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q 004419 393 IKSLKALIEKLQKDKLESQIMLD 415 (754)
Q Consensus 393 ~~~l~~~l~~l~~~~~~l~~~~~ 415 (754)
+..|..++..+......|+..++
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555555555555555554
No 279
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=86.47 E-value=65 Score=36.68 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 242 QHWNVEVERYKALTDSLLIDRSLVL 266 (754)
Q Consensus 242 ~~l~~~~~~~~~~~~~l~~~~~~l~ 266 (754)
..+...+.........++-++..+.
T Consensus 137 ~~l~~~l~~~eken~~Lkye~~~~~ 161 (769)
T PF05911_consen 137 EDLMARLESTEKENSSLKYELHVLS 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444433333
No 280
>PLN02189 cellulose synthase
Probab=86.38 E-value=0.45 Score=54.06 Aligned_cols=46 Identities=26% Similarity=0.619 Sum_probs=35.9
Q ss_pred cccccccccccc-------ceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
-.|.||++...- .+.--||--.|..|..--.+.++..||.|+..+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 389999987531 2222477778999998877778888999999887
No 281
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=86.01 E-value=0.38 Score=37.11 Aligned_cols=25 Identities=32% Similarity=0.705 Sum_probs=15.6
Q ss_pred eccCCCcccHHHHHHHhccCCCCccccCcC
Q 004419 714 ITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 714 ~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
.+.|||+|-.. ....++ =||.|+..
T Consensus 5 CtrCG~vf~~g-~~~il~----GCp~CG~n 29 (112)
T COG3364 5 CTRCGEVFDDG-SEEILS----GCPKCGCN 29 (112)
T ss_pred ecccccccccc-cHHHHc----cCccccch
Confidence 46899999654 222222 29999853
No 282
>PLN02436 cellulose synthase A
Probab=85.96 E-value=0.48 Score=53.91 Aligned_cols=46 Identities=26% Similarity=0.670 Sum_probs=36.0
Q ss_pred cccccccccccc-------ceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
-.|.||++...- ...-.||--.|..|..--.+.++..||.|+..+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 389999987632 2223577778999998877777888999999887
No 283
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.84 E-value=24 Score=34.93 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004419 579 AKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKEL 625 (754)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 625 (754)
++..+..++..+..+..++.....++..++.....++.++..++.++
T Consensus 117 Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 117 LKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444444444444444443
No 284
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=85.63 E-value=0.59 Score=44.36 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=25.5
Q ss_pred eeccCCCcccHHHHHHHhccCC--------CCccccCcCcCCC
Q 004419 713 VITKCFHLFCNPCIQRNLEIRH--------RKCPGCGTAFGQS 747 (754)
Q Consensus 713 ~~~~CgH~fC~~C~~~~~~~~~--------~~Cp~C~~~~~~~ 747 (754)
...||||+.-..-..-|...+. .-||+|...+...
T Consensus 374 aF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 374 AFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred ccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 3459999987777777776542 2399999887654
No 285
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.55 E-value=0.4 Score=38.42 Aligned_cols=25 Identities=24% Similarity=0.692 Sum_probs=20.5
Q ss_pred cccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 720 LFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 720 ~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
-||+.|....+.+ ||.|..++..++
T Consensus 29 afcskcgeati~q----cp~csasirgd~ 53 (160)
T COG4306 29 AFCSKCGEATITQ----CPICSASIRGDY 53 (160)
T ss_pred HHHhhhchHHHhc----CCccCCcccccc
Confidence 6999999987654 999999887764
No 286
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=85.51 E-value=0.44 Score=40.48 Aligned_cols=27 Identities=26% Similarity=0.711 Sum_probs=22.6
Q ss_pred CCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 718 FHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 718 gH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
.|-||..|....+. .||.|..++....
T Consensus 27 ~~~fC~kCG~~tI~----~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 27 REKFCSKCGAKTIT----SCPNCSTPIRGDY 53 (158)
T ss_pred HHHHHHHhhHHHHH----HCcCCCCCCCCce
Confidence 46799999998765 5999999998764
No 287
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=85.29 E-value=0.58 Score=45.51 Aligned_cols=47 Identities=19% Similarity=0.656 Sum_probs=35.9
Q ss_pred ccccccccccc--c--ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPK--E--VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~--~--~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
..||+|.+... + .+-.||||..|..|..+... ....||.||.++..+
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccccC
Confidence 57999988652 2 22337899999999999887 577899999776544
No 288
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.26 E-value=58 Score=35.00 Aligned_cols=12 Identities=8% Similarity=0.039 Sum_probs=7.8
Q ss_pred CccccCcCcCCC
Q 004419 736 KCPGCGTAFGQS 747 (754)
Q Consensus 736 ~Cp~C~~~~~~~ 747 (754)
.||.-..+|++-
T Consensus 389 ~~~~~~qpf~~l 400 (861)
T KOG1899|consen 389 NNITSAQPFSPL 400 (861)
T ss_pred cccccCCcCCCC
Confidence 377777777653
No 289
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.23 E-value=40 Score=33.12 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004419 659 ERKKLEEELMEVNNKVAE 676 (754)
Q Consensus 659 ~~~~~~~e~~~~~~~l~~ 676 (754)
.+..+..++..++..+..
T Consensus 230 hI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 230 HIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 290
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.79 E-value=27 Score=31.85 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 004419 73 LSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAE 132 (754)
Q Consensus 73 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~e 132 (754)
+++....+-.++..++.++..++..++.+..+...++..+..+-.+...++..++.+...
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 444444455555555555555555555555555555555555555555555555444443
No 291
>PF15616 TerY-C: TerY-C metal binding domain
Probab=84.78 E-value=0.5 Score=39.47 Aligned_cols=43 Identities=26% Similarity=0.405 Sum_probs=29.9
Q ss_pred cCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 696 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
|.....||-|...+.-++. .||++||-.=- ....||-|+....
T Consensus 74 L~g~PgCP~CGn~~~fa~C-~CGkl~Ci~g~------~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAFAVC-GCGKLFCIDGE------GEVTCPWCGNEGS 116 (131)
T ss_pred hcCCCCCCCCcChhcEEEe-cCCCEEEeCCC------CCEECCCCCCeee
Confidence 3344799999887764444 89999984321 3457999996543
No 292
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=84.74 E-value=0.26 Score=46.73 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=35.7
Q ss_pred CCcccccccccccccceeccCCC-cccHHHHHHHhccCCCCccccCcCcC
Q 004419 697 KAILKCGVCFDRPKEVVITKCFH-LFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~~~~~~CgH-~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
+....|.+|+.+-.-....+||| +||-.|.....-.+.+.||+|...+.
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 34567888876655455569999 68999866654447888999987664
No 293
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.37 E-value=25 Score=32.70 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004419 471 LSAAEAEIIELVAKLDA 487 (754)
Q Consensus 471 l~~~~~el~~l~~~~~~ 487 (754)
++.++.++..++.++..
T Consensus 95 lp~le~el~~l~~~l~~ 111 (206)
T PRK10884 95 VPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 294
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.36 E-value=0.45 Score=48.99 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=29.9
Q ss_pred CCccccccccccc-----ccceeccCCCcccHHHHHHHhccCCCCcccc
Q 004419 697 KAILKCGVCFDRP-----KEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 740 (754)
Q Consensus 697 ~~~~~C~iC~~~~-----~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C 740 (754)
..+..||.|.-.+ -+.++-+|||-||..|.-.|.. .+..|+.|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~-~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKT-HNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhh-CCccccCc
Confidence 3557899995443 2355557999999999988866 34446553
No 295
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.36 E-value=0.29 Score=45.26 Aligned_cols=23 Identities=30% Similarity=0.891 Sum_probs=17.9
Q ss_pred cccceeccCCCcccHHHHHHHhc
Q 004419 709 PKEVVITKCFHLFCNPCIQRNLE 731 (754)
Q Consensus 709 ~~~~~~~~CgH~fC~~C~~~~~~ 731 (754)
-..--+|.|+|+||..|......
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~~ 37 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASSP 37 (233)
T ss_pred CCceeeeechhhhhhhhcccCCc
Confidence 33344899999999999997643
No 296
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=84.34 E-value=0.19 Score=48.74 Aligned_cols=46 Identities=22% Similarity=0.441 Sum_probs=29.9
Q ss_pred cccccccc-ccccce----eccCCCcccHHHHHHHhcc------CCCCccccCcCcC
Q 004419 700 LKCGVCFD-RPKEVV----ITKCFHLFCNPCIQRNLEI------RHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~-~~~~~~----~~~CgH~fC~~C~~~~~~~------~~~~Cp~C~~~~~ 745 (754)
..|.+|.. .|.-.. .-.||++||..|....+-. +.+-|+.|-..+.
T Consensus 169 ~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~ 225 (288)
T KOG1729|consen 169 TECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELE 225 (288)
T ss_pred eecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHh
Confidence 58999988 554211 1279999999999874321 2335787765553
No 297
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.20 E-value=31 Score=37.00 Aligned_cols=29 Identities=34% Similarity=0.581 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 642 IQRKTEDMRKELENERNERKKLEEELMEV 670 (754)
Q Consensus 642 l~~~~~~~~~~l~~~~~~~~~~~~e~~~~ 670 (754)
+...+..+..++......+..++..+..+
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444433333333444443333
No 298
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=84.03 E-value=0.69 Score=52.87 Aligned_cols=46 Identities=26% Similarity=0.653 Sum_probs=35.9
Q ss_pred cccccccccccc-------ceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
-.|-||++...- .+.--||--.|.+|..-=.+.++..||.|+..+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 389999987532 2333677778999998777777888999999887
No 299
>PLN02195 cellulose synthase A
Probab=84.02 E-value=0.81 Score=51.75 Aligned_cols=46 Identities=20% Similarity=0.595 Sum_probs=36.4
Q ss_pred cccccccccccc-------ceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
..|.||++...- .+.--||--.|.+|..--.+.++..||.|+..+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 579999885432 3334788889999998777777888999999998
No 300
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=83.84 E-value=0.59 Score=46.91 Aligned_cols=67 Identities=12% Similarity=0.186 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhhhhhH----HHHHHHHHHHhcc---CCccccccccccccccee----ccCCCcccHHHHHHHh
Q 004419 664 EEELMEVNNKVAELTSETGE----AAIQKLQDEIKDC---KAILKCGVCFDRPKEVVI----TKCFHLFCNPCIQRNL 730 (754)
Q Consensus 664 ~~e~~~~~~~l~~l~~~~~~----~~~~~l~~e~~~~---~~~~~C~iC~~~~~~~~~----~~CgH~fC~~C~~~~~ 730 (754)
-.+...+..++.+|..-... .....+...+--| .....||+|...|.-+.. --||-+.|..|..-..
T Consensus 138 ~ve~nkLiiRl~rL~~~~~t~~d~~k~k~~EqsvVpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iS 215 (505)
T KOG1842|consen 138 AVETNKLIIRLKRLEEGLPTEKDSVKRKRLEQSVVPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFIS 215 (505)
T ss_pred HHHHHHHHHHHHHHHccCccccchHHHHHHHhccccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcC
Confidence 33344444444444433221 3344454443333 234799999999963222 2599999999988654
No 301
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=83.34 E-value=13 Score=38.20 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=7.9
Q ss_pred cHHHHHHHhccCCCCccc
Q 004419 722 CNPCIQRNLEIRHRKCPG 739 (754)
Q Consensus 722 C~~C~~~~~~~~~~~Cp~ 739 (754)
|..|+..+..+|.+.|.+
T Consensus 361 ~~~~~~Pl~~tR~r~~~t 378 (395)
T PF10267_consen 361 VANCPLPLTRTRLRTLTT 378 (395)
T ss_pred HhcCCcHHhhccHHHHHH
Confidence 334444444444444433
No 302
>PF12773 DZR: Double zinc ribbon
Probab=83.24 E-value=1.1 Score=30.55 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=21.0
Q ss_pred CCcccHHHHHHHh--ccCCCCccccCcCcCCCC
Q 004419 718 FHLFCNPCIQRNL--EIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 718 gH~fC~~C~~~~~--~~~~~~Cp~C~~~~~~~d 748 (754)
+-.||..|..... ......||.|+..+....
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~ 43 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAENPPNA 43 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCCCcCCc
Confidence 4567877877776 333456888888776654
No 303
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.18 E-value=0.17 Score=45.77 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=13.8
Q ss_pred Cccccccccccccc-ceeccC
Q 004419 698 AILKCGVCFDRPKE-VVITKC 717 (754)
Q Consensus 698 ~~~~C~iC~~~~~~-~~~~~C 717 (754)
..+.||||...|.. .|.+.-
T Consensus 18 k~ieCPvC~tkFkkeev~tgs 38 (267)
T COG1655 18 KTIECPVCNTKFKKEEVKTGS 38 (267)
T ss_pred ceeccCcccchhhhhheeccc
Confidence 45899999998864 333333
No 304
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.17 E-value=22 Score=28.46 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004419 470 RLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIG 517 (754)
Q Consensus 470 ~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~ 517 (754)
.+..++..++..+.....+..+...|...+..+..+.......+.+++
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLq 64 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQ 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333333333333333333333333333333333333
No 305
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=83.10 E-value=68 Score=34.04 Aligned_cols=113 Identities=8% Similarity=0.088 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHH
Q 004419 427 LMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREA 506 (754)
Q Consensus 427 ~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~ 506 (754)
+.....++..+...+..+...++... -.++.++..+..+...+..+..+.......+..++..=...+..+
T Consensus 349 vr~~e~eL~el~~~~~~i~~~~~~~~---------~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l 419 (570)
T COG4477 349 VRKFEKELKELESVLDEILENIEAQE---------VAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENL 419 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc---------ccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666665555555443311 122334444444444444444444444444444443333334444
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 004419 507 EAYIAEMETIGQAFE---------DMQTQNQHLLQQVAERDDLNIKLVSES 548 (754)
Q Consensus 507 ~~l~~e~~~l~~~~~---------~~~~~~~~~~~~~~~l~~~l~~l~~e~ 548 (754)
..+...+..+..-+. .+-.........+..+..++.......
T Consensus 420 ~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm 470 (570)
T COG4477 420 ERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINM 470 (570)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcH
Confidence 445544444444443 233333444444444444444443333
No 306
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.09 E-value=1.2 Score=41.33 Aligned_cols=54 Identities=15% Similarity=-0.003 Sum_probs=51.1
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
++|.|-++.|++||++|-|=+|-..=|..+....+++-|.-|.+++...+.|||
T Consensus 212 lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~ 265 (284)
T KOG4642|consen 212 LCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNL 265 (284)
T ss_pred hhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccch
Confidence 799999999999999999999999999999998899999999999999888876
No 307
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=82.88 E-value=0.8 Score=52.17 Aligned_cols=46 Identities=28% Similarity=0.613 Sum_probs=36.0
Q ss_pred cccccccccccc-------ceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
-.|.||++...- .+.--||--.|..|..--.+.+...||.|+.++.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 479999987532 2333677778999998777777888999999887
No 308
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=82.70 E-value=1.2 Score=48.95 Aligned_cols=45 Identities=27% Similarity=0.726 Sum_probs=34.3
Q ss_pred cccccccccccccce----eccCCCcccHHHHHHHhccC------CCCccccCcC
Q 004419 699 ILKCGVCFDRPKEVV----ITKCFHLFCNPCIQRNLEIR------HRKCPGCGTA 743 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~----~~~CgH~fC~~C~~~~~~~~------~~~Cp~C~~~ 743 (754)
.+.|.||.+.++... -..|+|+|=..||..|-..+ .-.||.|...
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 489999999886522 23799999999999998642 2259999843
No 309
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=82.41 E-value=0.87 Score=27.80 Aligned_cols=11 Identities=36% Similarity=0.821 Sum_probs=8.0
Q ss_pred CCCccccCcCc
Q 004419 734 HRKCPGCGTAF 744 (754)
Q Consensus 734 ~~~Cp~C~~~~ 744 (754)
.-.||.|+.+-
T Consensus 17 ~~~CP~Cg~~~ 27 (33)
T cd00350 17 PWVCPVCGAPK 27 (33)
T ss_pred CCcCcCCCCcH
Confidence 44799998753
No 310
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=81.82 E-value=1.5 Score=29.99 Aligned_cols=41 Identities=29% Similarity=0.691 Sum_probs=31.2
Q ss_pred ccccccccccc--ccee-c-cCCCcccHHHHHHHhccCCCCccc--cCcCcC
Q 004419 700 LKCGVCFDRPK--EVVI-T-KCFHLFCNPCIQRNLEIRHRKCPG--CGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~--~~~~-~-~CgH~fC~~C~~~~~~~~~~~Cp~--C~~~~~ 745 (754)
-.|++|.+.|+ +.++ - .||-.+=..|-.. ...|-+ |+.+|.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~-----~g~C~~~~c~~~~~ 52 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK-----AGGCINYSCGTGFE 52 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh-----CCceEeccCCCCcc
Confidence 58999999994 3333 3 6999999999884 455877 887775
No 311
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=81.28 E-value=0.17 Score=40.48 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=15.0
Q ss_pred cccccccc--cccceeccC--CCcc--cHHHHHHHhccCCCCccccCcCcCCC
Q 004419 701 KCGVCFDR--PKEVVITKC--FHLF--CNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 701 ~C~iC~~~--~~~~~~~~C--gH~f--C~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
.|++|... |.++....| ||+| |..=.........+.||.|+..+-..
T Consensus 16 ~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~l~~ 68 (99)
T PF12660_consen 16 KCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRALDP 68 (99)
T ss_dssp -------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EEE-G
T ss_pred cccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEEecC
Confidence 79999775 455544444 9998 54433333333446799999766543
No 312
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.27 E-value=54 Score=31.64 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 004419 660 RKKLEEELMEVNNKVAELTSET 681 (754)
Q Consensus 660 ~~~~~~e~~~~~~~l~~l~~~~ 681 (754)
..+++..+..|...|..+....
T Consensus 184 nk~lq~QL~~L~~EL~~~kde~ 205 (246)
T PF00769_consen 184 NKRLQEQLKELKSELEQLKDEE 205 (246)
T ss_dssp -HHHHHHHHHHHHHHHTTB-CC
T ss_pred hHHHHHHHHHHHHHHHHHhhhh
Confidence 3456666666666666665444
No 313
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=81.21 E-value=93 Score=34.32 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhhh
Q 004419 666 ELMEVNNKVAELTS 679 (754)
Q Consensus 666 e~~~~~~~l~~l~~ 679 (754)
+...+..++..+..
T Consensus 640 e~~rl~~rlqeler 653 (739)
T PF07111_consen 640 EGQRLTQRLQELER 653 (739)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 314
>PLN02400 cellulose synthase
Probab=81.18 E-value=0.84 Score=52.22 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=35.5
Q ss_pred cccccccccccc-------ceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
-.|.||++...- ...--||--.|..|..--.+.+...||.|+..+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 389999987532 2333677778999998777777778999999887
No 315
>PHA02862 5L protein; Provisional
Probab=81.14 E-value=1.5 Score=36.80 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=33.4
Q ss_pred ccccccccccccceeccCCC-----cccHHHHHHHhccC-CCCccccCcCcCC
Q 004419 700 LKCGVCFDRPKEVVITKCFH-----LFCNPCIQRNLEIR-HRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH-----~fC~~C~~~~~~~~-~~~Cp~C~~~~~~ 746 (754)
..|=||...-... ..||+= ..-..|+..|+... ...||.|+.+|.-
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4699998876544 467643 23789999999864 3359999988854
No 316
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=81.06 E-value=39 Score=29.85 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 004419 468 QQRLSAAEAEIIELVAKLDASERDVMELEEA 498 (754)
Q Consensus 468 ~~~l~~~~~el~~l~~~~~~~~~~~~~l~~~ 498 (754)
..+...+..++..++..+...-.+++.+...
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~ 56 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKR 56 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 317
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=81.00 E-value=93 Score=34.24 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 650 RKELENERNERKKLEEELMEVNNKVAELT 678 (754)
Q Consensus 650 ~~~l~~~~~~~~~~~~e~~~~~~~l~~l~ 678 (754)
...+..+.....++...++.++..+..|.
T Consensus 229 kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 229 KKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333333334444444444444444433
No 318
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=80.82 E-value=0.57 Score=46.60 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=22.2
Q ss_pred CCCcc-cHHHH--HHHhccCCCCccccCcCcCCCCCcccC
Q 004419 717 CFHLF-CNPCI--QRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 717 CgH~f-C~~C~--~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
=||++ |+.|. .........+||+|+..|.- ..|+|
T Consensus 237 ~g~~~~c~~cg~~~~~~~~~~~~c~~Cg~~~~~--~GPlW 274 (380)
T COG1867 237 LGYIYHCSRCGEIVGSFREVDEKCPHCGGKVHL--AGPLW 274 (380)
T ss_pred cCcEEEcccccceecccccccccCCccccccee--ccCcc
Confidence 45654 99996 33333356689999976554 44444
No 319
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=80.74 E-value=0.4 Score=45.13 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=9.5
Q ss_pred Cccccccccccccc
Q 004419 698 AILKCGVCFDRPKE 711 (754)
Q Consensus 698 ~~~~C~iC~~~~~~ 711 (754)
..+.|++|...|..
T Consensus 160 ka~~C~~C~K~YvS 173 (279)
T KOG2462|consen 160 KAFSCKYCGKVYVS 173 (279)
T ss_pred ccccCCCCCceeee
Confidence 34678888777754
No 320
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=80.52 E-value=0.62 Score=53.79 Aligned_cols=48 Identities=19% Similarity=0.375 Sum_probs=31.8
Q ss_pred ccccccccccccceec-cCCCc-----ccHHHHHHHhcc--CCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPKEVVIT-KCFHL-----FCNPCIQRNLEI--RHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~-~CgH~-----fC~~C~~~~~~~--~~~~Cp~C~~~~~~~d 748 (754)
..||-|+..-... .. .||+. +|..|-...... ...+||.|+.+..+..
T Consensus 668 rkCPkCG~~t~~~-fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~ 723 (1337)
T PRK14714 668 RRCPSCGTETYEN-RCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQ 723 (1337)
T ss_pred EECCCCCCccccc-cCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccc
Confidence 6899997643223 44 49964 499998854221 1447999998876643
No 321
>PF13514 AAA_27: AAA domain
Probab=80.52 E-value=1.5e+02 Score=36.29 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCh
Q 004419 30 SRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSA 66 (754)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 66 (754)
.+...+...+......+..+..++..+...+..+...
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~ 278 (1111)
T PF13514_consen 242 ERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVD 278 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3455555556666666666666677777777665444
No 322
>PRK11281 hypothetical protein; Provisional
Probab=80.22 E-value=1.4e+02 Score=35.89 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 004419 427 LMEIKESERRAHSQAEVLKNALD 449 (754)
Q Consensus 427 ~~~l~~~~~~~~~~l~~l~~~l~ 449 (754)
...+..+...+..++...+..+.
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~ 216 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666555555544
No 323
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.15 E-value=69 Score=32.16 Aligned_cols=11 Identities=18% Similarity=0.021 Sum_probs=4.1
Q ss_pred HHHHHHHHhhh
Q 004419 537 RDDLNIKLVSE 547 (754)
Q Consensus 537 l~~~l~~l~~e 547 (754)
+...+..+..+
T Consensus 149 L~~~~~~l~~D 159 (312)
T smart00787 149 LDENLEGLKED 159 (312)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 324
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=80.15 E-value=1.9 Score=37.08 Aligned_cols=48 Identities=17% Similarity=0.407 Sum_probs=34.0
Q ss_pred cccccccccccccceeccC--CCc---ccHHHHHHHhccC-CCCccccCcCcCCC
Q 004419 699 ILKCGVCFDRPKEVVITKC--FHL---FCNPCIQRNLEIR-HRKCPGCGTAFGQS 747 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~C--gH~---fC~~C~~~~~~~~-~~~Cp~C~~~~~~~ 747 (754)
...|=||++.... -..|| ..+ .-.+|+..|.... ...||.|+.+|.-.
T Consensus 8 ~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 8 DKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 4689999877643 33465 332 2789999999864 44699999988644
No 325
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=80.13 E-value=0.4 Score=39.33 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=18.1
Q ss_pred ccccccccccccceeccCCCcc--cHHHHHHHhccCCCCccccCcC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLF--CNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~f--C~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
+.|..-.-.|....-..|||.. +++|-. +.||.|+..
T Consensus 31 l~Crt~~~G~~~~~C~~Cg~~~~~~~SCk~-------R~CP~C~~~ 69 (111)
T PF14319_consen 31 LACRTEALGFHRYRCEDCGHEKIVYNSCKN-------RHCPSCQAK 69 (111)
T ss_pred HhcCCccCCcceeecCCCCceEEecCcccC-------cCCCCCCCh
Confidence 4555444444444444566643 555533 246666543
No 326
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=79.97 E-value=1.1 Score=42.33 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=9.7
Q ss_pred ccccccccccccceec
Q 004419 700 LKCGVCFDRPKEVVIT 715 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~ 715 (754)
..|.||+..|..|=+|
T Consensus 188 c~C~iCGKaFSRPWLL 203 (279)
T KOG2462|consen 188 CECGICGKAFSRPWLL 203 (279)
T ss_pred cccccccccccchHHh
Confidence 4677777766654443
No 327
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=79.60 E-value=0.81 Score=44.06 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=14.2
Q ss_pred ccccccccccccceeccCCCcccHHHHH
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQ 727 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~ 727 (754)
--||||++...- ..-|-.-|.+|.-
T Consensus 16 ElCPVCGDkVSG---YHYGLLTCESCKG 40 (475)
T KOG4218|consen 16 ELCPVCGDKVSG---YHYGLLTCESCKG 40 (475)
T ss_pred cccccccCcccc---ceeeeeehhhhhh
Confidence 369999987642 1223344556544
No 328
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.34 E-value=1.3 Score=38.20 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=25.0
Q ss_pred cCCCcccHHHHHHHhcc----C------CCCccccCcCcCC
Q 004419 716 KCFHLFCNPCIQRNLEI----R------HRKCPGCGTAFGQ 746 (754)
Q Consensus 716 ~CgH~fC~~C~~~~~~~----~------~~~Cp~C~~~~~~ 746 (754)
.||..|-..|+..|+.. | ...||-|..|+.-
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 69999999999999863 2 3359999988764
No 329
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.33 E-value=0.97 Score=35.06 Aligned_cols=15 Identities=33% Similarity=0.944 Sum_probs=12.0
Q ss_pred CCCCccccCcCcCCC
Q 004419 733 RHRKCPGCGTAFGQS 747 (754)
Q Consensus 733 ~~~~Cp~C~~~~~~~ 747 (754)
+.+.||.|+.+|++-
T Consensus 48 G~t~CP~Cg~~~e~~ 62 (115)
T COG1885 48 GSTSCPKCGEPFESA 62 (115)
T ss_pred ccccCCCCCCcccee
Confidence 456799999999864
No 330
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=79.27 E-value=63 Score=31.20 Aligned_cols=9 Identities=44% Similarity=0.634 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 004419 661 KKLEEELME 669 (754)
Q Consensus 661 ~~~~~e~~~ 669 (754)
..+..+|..
T Consensus 192 ~~L~~EL~~ 200 (246)
T PF00769_consen 192 KELKSELEQ 200 (246)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 333333333
No 331
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.71 E-value=1.1 Score=36.11 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=31.8
Q ss_pred ccccccccccccce--------------eccCCCcccHHHHHHHhccCCCCccccC
Q 004419 700 LKCGVCFDRPKEVV--------------ITKCFHLFCNPCIQRNLEIRHRKCPGCG 741 (754)
Q Consensus 700 ~~C~iC~~~~~~~~--------------~~~CgH~fC~~C~~~~~~~~~~~Cp~C~ 741 (754)
..|--|...|..+. -..|++.||.+|---+.. ....||.|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE-SLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh-hccCCcCCC
Confidence 45999999886531 337999999999877666 477799996
No 332
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=78.22 E-value=1.6e+02 Score=35.37 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 004419 427 LMEIKESERRAHSQAEVLKNALD 449 (754)
Q Consensus 427 ~~~l~~~~~~~~~~l~~l~~~l~ 449 (754)
...+..+..-+..++..++..+.
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQL 197 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666665544
No 333
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=78.02 E-value=0.83 Score=30.90 Aligned_cols=29 Identities=28% Similarity=0.707 Sum_probs=15.4
Q ss_pred Ccccccccccc----cccceeccCCCcccHHHH
Q 004419 698 AILKCGVCFDR----PKEVVITKCFHLFCNPCI 726 (754)
Q Consensus 698 ~~~~C~iC~~~----~~~~~~~~CgH~fC~~C~ 726 (754)
.++.||+|+.. .+....+.=+-+||..|-
T Consensus 3 ~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK 35 (55)
T PF14205_consen 3 EWILCPICGNKTRLKIREDTVLKNFPLYCPKCK 35 (55)
T ss_pred eEEECCCCCCccceeeecCceeccccccCCCCC
Confidence 35789999633 233333444445554443
No 334
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=77.94 E-value=0.98 Score=36.62 Aligned_cols=28 Identities=29% Similarity=0.686 Sum_probs=21.4
Q ss_pred cccHHHHHHHhccC--CCCccccCcCcCCC
Q 004419 720 LFCNPCIQRNLEIR--HRKCPGCGTAFGQS 747 (754)
Q Consensus 720 ~fC~~C~~~~~~~~--~~~Cp~C~~~~~~~ 747 (754)
..|.+|..+|+... ...||.|+..|...
T Consensus 10 R~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 35899999888753 22499999998876
No 335
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=77.73 E-value=1.1e+02 Score=33.03 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 651 KELENERNERKKLEEELMEVNNKV 674 (754)
Q Consensus 651 ~~l~~~~~~~~~~~~e~~~~~~~l 674 (754)
.++......+..++..+......+
T Consensus 291 ~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 291 QEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444333
No 336
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=77.71 E-value=0.54 Score=30.63 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=16.5
Q ss_pred ccCCCcccHHHHHHHhccCCCCccccCc
Q 004419 715 TKCFHLFCNPCIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 715 ~~CgH~fC~~C~~~~~~~~~~~Cp~C~~ 742 (754)
..|||.|-...-..- .....||.|+.
T Consensus 9 ~~Cg~~fe~~~~~~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSISE--DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcCC--CCCCcCCCCCC
Confidence 367888854433222 24567999987
No 337
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=77.36 E-value=0.75 Score=50.74 Aligned_cols=46 Identities=20% Similarity=0.402 Sum_probs=0.0
Q ss_pred ccccccccccccceeccCCC-----cccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 700 LKCGVCFDRPKEVVITKCFH-----LFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH-----~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
..||-|...--....-.||- .+|..|..... ...||.|+..+....
T Consensus 656 r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~~---~~~C~~C~~~~~~~~ 706 (900)
T PF03833_consen 656 RRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEVE---EDECPKCGRETTSYS 706 (900)
T ss_dssp ------------------------------------------------------
T ss_pred ccCcccCCcchhhcCcccCCccccceeccccccccC---ccccccccccCcccc
Confidence 58999965422232335764 37999999763 448999998776543
No 338
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=77.35 E-value=0.75 Score=45.78 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=0.0
Q ss_pred ceeccCCCcccHHHHHHHhc--cCCCCccccCcC
Q 004419 712 VVITKCFHLFCNPCIQRNLE--IRHRKCPGCGTA 743 (754)
Q Consensus 712 ~~~~~CgH~fC~~C~~~~~~--~~~~~Cp~C~~~ 743 (754)
.|.+.|||++...=--.... ...+.||+|+..
T Consensus 304 ~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 304 WVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ----------------------------------
T ss_pred eeeccccceeeecccccccccccccccCCCcccc
Confidence 56779999996542211111 136789999853
No 339
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=77.29 E-value=1.2 Score=48.04 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=24.7
Q ss_pred ccccccccccccc---e------eccCCCcccHHHHHHHhcc
Q 004419 700 LKCGVCFDRPKEV---V------ITKCFHLFCNPCIQRNLEI 732 (754)
Q Consensus 700 ~~C~iC~~~~~~~---~------~~~CgH~fC~~C~~~~~~~ 732 (754)
..|..|...|... + .-.||++||..|......+
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~y 502 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHY 502 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcccC
Confidence 4699999988531 1 1269999999999877653
No 340
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.23 E-value=1e+02 Score=32.63 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 292 RIERLEVQLQKSIIEKNDLGLKMEE 316 (754)
Q Consensus 292 ~~~~~~~~l~~l~~~~~~l~~~l~~ 316 (754)
++.++-..+..-..+...+..++..
T Consensus 230 QlEEALeTlq~EReqk~alkkEL~q 254 (772)
T KOG0999|consen 230 QLEEALETLQQEREQKNALKKELSQ 254 (772)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333334444555555543
No 341
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=77.12 E-value=0.67 Score=28.04 Aligned_cols=25 Identities=36% Similarity=0.862 Sum_probs=12.7
Q ss_pred CCcccHHHHHHHhccC---CCCccccCc
Q 004419 718 FHLFCNPCIQRNLEIR---HRKCPGCGT 742 (754)
Q Consensus 718 gH~fC~~C~~~~~~~~---~~~Cp~C~~ 742 (754)
.|.||..|........ .+.||.|+.
T Consensus 2 ~~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TTSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CCcccCcCCccccCCCCcCEeECCCCcC
Confidence 3778888877655432 234888875
No 342
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=77.00 E-value=28 Score=26.01 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004419 73 LSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEES 136 (754)
Q Consensus 73 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~ 136 (754)
|+.++...-+.|.-++-++++++.+...+..+...+......+..+...++.+....+..+..+
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555444444444444444444444444444444444444443
No 343
>PRK05978 hypothetical protein; Provisional
Probab=76.71 E-value=1.4 Score=37.88 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=22.9
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
.+||-|++ ||+|- .+++ ....||+|+..|..-
T Consensus 34 grCP~CG~----------G~LF~-----g~Lk-v~~~C~~CG~~~~~~ 65 (148)
T PRK05978 34 GRCPACGE----------GKLFR-----AFLK-PVDHCAACGEDFTHH 65 (148)
T ss_pred CcCCCCCC----------Ccccc-----cccc-cCCCccccCCccccC
Confidence 47888865 56662 5555 366799999988854
No 344
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=76.54 E-value=28 Score=25.68 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 004419 75 KIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEE 135 (754)
Q Consensus 75 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~ 135 (754)
..+..|...+..+...+.........+..+-+.+...+...-.++.+|..+++.+..++..
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555555555555555433
No 345
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=76.54 E-value=1.9 Score=28.90 Aligned_cols=39 Identities=28% Similarity=0.754 Sum_probs=23.8
Q ss_pred cccccccccc--ceeccCCC-----cccHHHHHHHhcc-CCCCcccc
Q 004419 702 CGVCFDRPKE--VVITKCFH-----LFCNPCIQRNLEI-RHRKCPGC 740 (754)
Q Consensus 702 C~iC~~~~~~--~~~~~CgH-----~fC~~C~~~~~~~-~~~~Cp~C 740 (754)
|-||++.... +.+.||+= ..=..|+..|+.. +..+||.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6788766543 67788853 2367899999985 34569988
No 346
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=76.45 E-value=45 Score=28.99 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=19.2
Q ss_pred cceeccCCCcccHHHHHHHhccCCCCccccCcC
Q 004419 711 EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 711 ~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
.-+...|||..+..= ..+.+.||.|+..
T Consensus 112 ~l~C~~Cg~~~~~~~-----~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 112 TLVCENCGHEVELTH-----PERLPPCPKCGHT 139 (146)
T ss_pred eEecccCCCEEEecC-----CCcCCCCCCCCCC
Confidence 345568899887652 1257789999864
No 347
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=76.26 E-value=0.82 Score=50.10 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=33.5
Q ss_pred ccccccccccc--cceeccCCCcccHHHHHHHhcc-----CCCCccccCcCcCC
Q 004419 700 LKCGVCFDRPK--EVVITKCFHLFCNPCIQRNLEI-----RHRKCPGCGTAFGQ 746 (754)
Q Consensus 700 ~~C~iC~~~~~--~~~~~~CgH~fC~~C~~~~~~~-----~~~~Cp~C~~~~~~ 746 (754)
-.|-.|..... ..+...|||.||..|+..|.-. ...+||.|+..-..
T Consensus 230 ~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~ 283 (889)
T KOG1356|consen 230 EMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNK 283 (889)
T ss_pred hhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCC
Confidence 58999976544 4777799999999999999521 23368886544433
No 348
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=76.26 E-value=69 Score=30.09 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 004419 618 LADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKE 652 (754)
Q Consensus 618 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 652 (754)
...+..-+.++...+..+...+--++..+.+...+
T Consensus 259 q~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~ 293 (330)
T KOG2991|consen 259 QEELYDFMEELDEDVEGMQSTILILQQKLKETRKE 293 (330)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444443333
No 349
>PRK00420 hypothetical protein; Validated
Probab=75.63 E-value=1 Score=36.58 Aligned_cols=10 Identities=30% Similarity=0.364 Sum_probs=7.0
Q ss_pred cccccccccc
Q 004419 700 LKCGVCFDRP 709 (754)
Q Consensus 700 ~~C~iC~~~~ 709 (754)
-.||+|+.++
T Consensus 24 ~~CP~Cg~pL 33 (112)
T PRK00420 24 KHCPVCGLPL 33 (112)
T ss_pred CCCCCCCCcc
Confidence 5799886544
No 350
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=75.42 E-value=0.67 Score=29.59 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=12.7
Q ss_pred ccccccc--cccc-cceeccCCCcccHHH
Q 004419 700 LKCGVCF--DRPK-EVVITKCFHLFCNPC 725 (754)
Q Consensus 700 ~~C~iC~--~~~~-~~~~~~CgH~fC~~C 725 (754)
.-||+|. +.|+ -+-.-.=||.||+.|
T Consensus 4 ~pCP~CGG~DrFri~~d~~~~G~~~C~~C 32 (40)
T PF08273_consen 4 GPCPICGGKDRFRIFDDKDGRGTWICRQC 32 (40)
T ss_dssp E--TTTT-TTTEEEETT----S-EEETTT
T ss_pred CCCCCCcCccccccCcCcccCCCEECCCC
Confidence 4699993 4454 111112399999999
No 351
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=75.15 E-value=2.2 Score=40.73 Aligned_cols=53 Identities=25% Similarity=0.464 Sum_probs=30.8
Q ss_pred HHHHHHHhccCCccccccccccc--c------------cceeccCCCcccHH---HHHHHhccCCCCccccCc
Q 004419 687 QKLQDEIKDCKAILKCGVCFDRP--K------------EVVITKCFHLFCNP---CIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 687 ~~l~~e~~~~~~~~~C~iC~~~~--~------------~~~~~~CgH~fC~~---C~~~~~~~~~~~Cp~C~~ 742 (754)
+.+.++++..+ ..|||-.... . -.|.+.|||+-... |-..... +.+.||+|+.
T Consensus 280 E~~~~~iNA~R--PQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H~WG~~e~~g~-~~r~CPmC~~ 349 (429)
T KOG3842|consen 280 EALRQEINAAR--PQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYHNWGVRENTGQ-RERECPMCRV 349 (429)
T ss_pred HHHHHHHhccC--CCCCcccceeecccccccccccccCCeEEEeccccccccccccccccCc-ccCcCCeeee
Confidence 33444444433 6899875432 1 15777999987543 2222222 4678999984
No 352
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.13 E-value=1.5 Score=46.62 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=17.9
Q ss_pred ccceeccCCCcccHHHHHHHhc
Q 004419 710 KEVVITKCFHLFCNPCIQRNLE 731 (754)
Q Consensus 710 ~~~~~~~CgH~fC~~C~~~~~~ 731 (754)
..+|.-+|||.||+.|...|..
T Consensus 177 ~~~v~C~~g~~FC~~C~~~~H~ 198 (444)
T KOG1815|consen 177 SVEVDCGCGHEFCFACGEESHS 198 (444)
T ss_pred ccceeCCCCchhHhhccccccC
Confidence 4477779999999999887764
No 353
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.02 E-value=1.3 Score=43.54 Aligned_cols=43 Identities=12% Similarity=-0.022 Sum_probs=34.6
Q ss_pred ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 712 VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 712 ~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
|.+.|=||+|...-+.+|-...+-.||.-+..|.-++...+|+
T Consensus 346 P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l~kvy~ 388 (389)
T KOG0396|consen 346 PHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSELCKVYL 388 (389)
T ss_pred cccccCceeehhHHHHhhcccCCCcCCCCCccccHHHHHHHhc
Confidence 7777888888888888887654467999999888888877775
No 354
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.99 E-value=69 Score=29.43 Aligned_cols=13 Identities=0% Similarity=-0.110 Sum_probs=4.8
Q ss_pred HHHHhHHHHHHHH
Q 004419 532 QQVAERDDLNIKL 544 (754)
Q Consensus 532 ~~~~~l~~~l~~l 544 (754)
..+...+.++...
T Consensus 66 ~ELE~ce~ELqr~ 78 (202)
T PF06818_consen 66 LELEVCENELQRK 78 (202)
T ss_pred HhHHHhHHHHHHH
Confidence 3333333333333
No 355
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=74.95 E-value=82 Score=30.32 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 004419 506 AEAYIAEME 514 (754)
Q Consensus 506 ~~~l~~e~~ 514 (754)
+..+..++.
T Consensus 54 ~~~l~~~l~ 62 (240)
T PF12795_consen 54 IRELQKELE 62 (240)
T ss_pred HHHHHHHHH
Confidence 333333333
No 356
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.67 E-value=1.7 Score=27.77 Aligned_cols=14 Identities=36% Similarity=0.873 Sum_probs=11.2
Q ss_pred CCCCccccCcCcCC
Q 004419 733 RHRKCPGCGTAFGQ 746 (754)
Q Consensus 733 ~~~~Cp~C~~~~~~ 746 (754)
+...||+|+.+|+-
T Consensus 7 p~K~C~~C~rpf~W 20 (42)
T PF10013_consen 7 PSKICPVCGRPFTW 20 (42)
T ss_pred CCCcCcccCCcchH
Confidence 45679999999973
No 357
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.65 E-value=59 Score=28.55 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 004419 659 ERKKLEEELMEVNNKV 674 (754)
Q Consensus 659 ~~~~~~~e~~~~~~~l 674 (754)
.+.+-+.++..++.++
T Consensus 134 e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 134 ELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444455555555443
No 358
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=74.22 E-value=1.9e+02 Score=34.30 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=19.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 004419 94 IHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELE 134 (754)
Q Consensus 94 l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~ 134 (754)
+...+......+...+.....+...+..+..+++.++....
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555554444444444444444443333
No 359
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.90 E-value=35 Score=25.59 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 004419 82 EEAKNLHEVMEIIHL 96 (754)
Q Consensus 82 ~~~~~l~~~~~~l~~ 96 (754)
..|..|..+-..+..
T Consensus 12 e~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSK 26 (74)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 360
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=73.75 E-value=88 Score=30.11 Aligned_cols=66 Identities=11% Similarity=0.254 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 76 IDDMMKEEAKNLHEVMEIIHLK----HKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLK 144 (754)
Q Consensus 76 ~~~~l~~~~~~l~~~~~~l~~~----~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~ 144 (754)
....+-.....|..-++.++.. +..+..++..+++. ....+..|..+++.+...+......+.-|.
T Consensus 39 ~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek---~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 39 KVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEK---EESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555444 22333444444433 456677777777777777777777766665
No 361
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=73.03 E-value=56 Score=27.51 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004419 73 LSKIDDMMKEEAKNLHEVM 91 (754)
Q Consensus 73 l~~~~~~l~~~~~~l~~~~ 91 (754)
|..+++.+...+....+-.
T Consensus 66 LsqRId~vd~klDe~~ei~ 84 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEIS 84 (126)
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 3333333333333333333
No 362
>PF14369 zf-RING_3: zinc-finger
Probab=72.54 E-value=0.77 Score=28.43 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=16.1
Q ss_pred cccHHHHHHHhc----cCCCCccccCcCcC
Q 004419 720 LFCNPCIQRNLE----IRHRKCPGCGTAFG 745 (754)
Q Consensus 720 ~fC~~C~~~~~~----~~~~~Cp~C~~~~~ 745 (754)
-||..|-....- .....||.|+..|-
T Consensus 3 ywCh~C~~~V~~~~~~~~~~~CP~C~~gFv 32 (35)
T PF14369_consen 3 YWCHQCNRFVRIAPSPDSDVACPRCHGGFV 32 (35)
T ss_pred EeCccCCCEeEeCcCCCCCcCCcCCCCcEe
Confidence 457777654432 12335999998874
No 363
>PRK10869 recombination and repair protein; Provisional
Probab=72.06 E-value=1.6e+02 Score=32.50 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=10.0
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHH
Q 004419 409 ESQIMLDMYGQEGRDPRDLMEIKESE 434 (754)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~l~~~~ 434 (754)
-++..++.+......+.....|..+.
T Consensus 189 ~l~fql~Ei~~~~l~~gE~eeL~~e~ 214 (553)
T PRK10869 189 LLQYQLKELNEFAPQPGEFEQIDEEY 214 (553)
T ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 33333333333333343333444433
No 364
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.84 E-value=2.6 Score=45.49 Aligned_cols=41 Identities=22% Similarity=0.625 Sum_probs=31.0
Q ss_pred ccccccccccccc--eeccCCCcccHHHHHHHhccCCCCccc-cC
Q 004419 700 LKCGVCFDRPKEV--VITKCFHLFCNPCIQRNLEIRHRKCPG-CG 741 (754)
Q Consensus 700 ~~C~iC~~~~~~~--~~~~CgH~fC~~C~~~~~~~~~~~Cp~-C~ 741 (754)
+.|.+|.-..+-. +...|||..-.+|...|+.+ +-.||. |+
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~-gd~CpsGCG 1072 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRT-GDVCPSGCG 1072 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhc-CCcCCCCCC
Confidence 5677776655442 33489999999999999996 457998 54
No 365
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=71.83 E-value=2.5 Score=29.37 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=4.4
Q ss_pred cccccccccc
Q 004419 701 KCGVCFDRPK 710 (754)
Q Consensus 701 ~C~iC~~~~~ 710 (754)
.||+|...|.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 7777777664
No 366
>PRK00420 hypothetical protein; Validated
Probab=71.74 E-value=0.95 Score=36.74 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=17.8
Q ss_pred ccHHHHHHHhc--cCCCCccccCcCcCCC
Q 004419 721 FCNPCIQRNLE--IRHRKCPGCGTAFGQS 747 (754)
Q Consensus 721 fC~~C~~~~~~--~~~~~Cp~C~~~~~~~ 747 (754)
.|..|...++. .+...||.|+..+...
T Consensus 25 ~CP~Cg~pLf~lk~g~~~Cp~Cg~~~~v~ 53 (112)
T PRK00420 25 HCPVCGLPLFELKDGEVVCPVHGKVYIVK 53 (112)
T ss_pred CCCCCCCcceecCCCceECCCCCCeeeec
Confidence 35566665553 4566799999876654
No 367
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=71.67 E-value=1.1 Score=43.03 Aligned_cols=25 Identities=28% Similarity=0.691 Sum_probs=10.8
Q ss_pred cccHHHHHHHhccCCCCccccCcCc
Q 004419 720 LFCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 720 ~fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
.||+.|...........||.|...|
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~F 355 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVF 355 (378)
T ss_pred cceeeeccccCCCCcEEchhcccee
Confidence 4455553333332333355554444
No 368
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=71.60 E-value=1e+02 Score=29.83 Aligned_cols=66 Identities=21% Similarity=0.371 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004419 612 ETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAEL 677 (754)
Q Consensus 612 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l 677 (754)
+.....+.....++..+...+...+..+..+...+.++..++..++....++...+..++.++..+
T Consensus 196 e~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 196 EEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444455555555555555555555555555555555555555555555555444
No 369
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=71.24 E-value=4.3 Score=25.11 Aligned_cols=26 Identities=19% Similarity=0.801 Sum_probs=14.2
Q ss_pred ccHHHHHHHhccC-------CCCccccCcCcCC
Q 004419 721 FCNPCIQRNLEIR-------HRKCPGCGTAFGQ 746 (754)
Q Consensus 721 fC~~C~~~~~~~~-------~~~Cp~C~~~~~~ 746 (754)
.|..|........ ...||.||..++-
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGPr~~i 33 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGPRYSI 33 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-SCCC
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCCCEEE
Confidence 3777777665422 3359999987763
No 370
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=71.01 E-value=1.3 Score=36.82 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=16.3
Q ss_pred CCcccHHHHHHHhcc--CCCCccccCcC
Q 004419 718 FHLFCNPCIQRNLEI--RHRKCPGCGTA 743 (754)
Q Consensus 718 gH~fC~~C~~~~~~~--~~~~Cp~C~~~ 743 (754)
+..+|..|...|.-. ....||.|+.+
T Consensus 70 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 70 VELECKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred CEEEhhhCCCccccCCccCCcCcCCCCC
Confidence 556677777555432 12349999965
No 371
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=70.74 E-value=1.2 Score=39.05 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=17.4
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCc
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
.+.|++| ||++=. .....||+|+.|=
T Consensus 134 ~~vC~vC------------Gy~~~g--------e~P~~CPiCga~k 159 (166)
T COG1592 134 VWVCPVC------------GYTHEG--------EAPEVCPICGAPK 159 (166)
T ss_pred EEEcCCC------------CCcccC--------CCCCcCCCCCChH
Confidence 4788877 766422 1455799999763
No 372
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.56 E-value=1.2 Score=42.37 Aligned_cols=47 Identities=23% Similarity=0.636 Sum_probs=36.2
Q ss_pred cccccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCC
Q 004419 699 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
.-.|.+|.-.+.-|... .|+|.||..|-..|.. ..+-||.|+....+
T Consensus 105 ~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~-~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 105 HDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFA-MGNDCPDCRGKISP 152 (324)
T ss_pred ccceeeeeeeEEecccccCceeeeeecCCchhhh-hhhccchhhcCcCc
Confidence 35788887777665444 7999999999999987 46679988766554
No 373
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=70.29 E-value=1.7e+02 Score=31.99 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhc
Q 004419 435 RRAHSQAEVLKNAL 448 (754)
Q Consensus 435 ~~~~~~l~~l~~~l 448 (754)
..+...+..+...+
T Consensus 158 ~sL~ekl~lld~al 171 (511)
T PF09787_consen 158 RSLQEKLSLLDEAL 171 (511)
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444433
No 374
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=70.20 E-value=0.74 Score=30.75 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=10.1
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
..+||.|+.++...
T Consensus 21 ~~~Cp~CG~~~~~~ 34 (46)
T PRK00398 21 GVRCPYCGYRILFK 34 (46)
T ss_pred ceECCCCCCeEEEc
Confidence 34699999877643
No 375
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=70.05 E-value=0.99 Score=25.00 Aligned_cols=8 Identities=50% Similarity=1.360 Sum_probs=5.9
Q ss_pred CCCccccC
Q 004419 734 HRKCPGCG 741 (754)
Q Consensus 734 ~~~Cp~C~ 741 (754)
...||.|+
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 34699997
No 376
>PRK11032 hypothetical protein; Provisional
Probab=69.19 E-value=82 Score=27.84 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=18.0
Q ss_pred cceeccCCCcccHHHHHHHhccCCCCccccCcC
Q 004419 711 EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 711 ~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
.-|...|||..+..=- .+.+.||.|+..
T Consensus 124 ~LvC~~Cg~~~~~~~p-----~~i~pCp~C~~~ 151 (160)
T PRK11032 124 NLVCEKCHHHLAFYTP-----EVLPLCPKCGHD 151 (160)
T ss_pred eEEecCCCCEEEecCC-----CcCCCCCCCCCC
Confidence 3555678888765322 256679999854
No 377
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=69.15 E-value=1.6 Score=41.94 Aligned_cols=31 Identities=29% Similarity=0.611 Sum_probs=21.1
Q ss_pred CCCcccHHHHHHHhccC---CCCccccCcCcCCC
Q 004419 717 CFHLFCNPCIQRNLEIR---HRKCPGCGTAFGQS 747 (754)
Q Consensus 717 CgH~fC~~C~~~~~~~~---~~~Cp~C~~~~~~~ 747 (754)
-.|.||..|........ .+-||.|+..+-++
T Consensus 109 ~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fPR 142 (279)
T COG2816 109 RSHRFCGRCGTKTYPREGGWARVCPKCGHEHFPR 142 (279)
T ss_pred hhCcCCCCCCCcCccccCceeeeCCCCCCccCCC
Confidence 47888888887665432 22488888776655
No 378
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=69.10 E-value=5.4 Score=36.09 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=21.7
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
.+.||.|+..|+--- -.. ....||.|+.++..-|
T Consensus 117 ~Y~Cp~C~~rytf~e---------------A~~-~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 117 FFFCPNCHIRFTFDE---------------AME-YGFRCPQCGEMLEEYD 150 (178)
T ss_pred EEECCCCCcEEeHHH---------------Hhh-cCCcCCCCCCCCeecc
Confidence 478998877665211 111 3678999998876543
No 379
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=69.06 E-value=0.98 Score=33.40 Aligned_cols=11 Identities=45% Similarity=1.114 Sum_probs=4.3
Q ss_pred ccccccccccc
Q 004419 700 LKCGVCFDRPK 710 (754)
Q Consensus 700 ~~C~iC~~~~~ 710 (754)
+.|..|+....
T Consensus 10 lrC~aCf~~t~ 20 (73)
T PF08772_consen 10 LRCHACFKITK 20 (73)
T ss_dssp EE-SSS--EES
T ss_pred EEccccccCcC
Confidence 45666655544
No 380
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=68.48 E-value=3 Score=28.37 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=18.2
Q ss_pred cccccccccccceeccCCCcccHH
Q 004419 701 KCGVCFDRPKEVVITKCFHLFCNP 724 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~~CgH~fC~~ 724 (754)
.|..|+..-.-.+-+.|||.+|..
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCC
Confidence 488887665566778899999944
No 381
>PHA02768 hypothetical protein; Provisional
Probab=68.29 E-value=1.8 Score=29.92 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=24.2
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
+.|+.|+..|.....+. +|+- .+. ...+|+.|+..|...
T Consensus 6 y~C~~CGK~Fs~~~~L~-~H~r------~H~--k~~kc~~C~k~f~~~ 44 (55)
T PHA02768 6 YECPICGEIYIKRKSMI-THLR------KHN--TNLKLSNCKRISLRT 44 (55)
T ss_pred cCcchhCCeeccHHHHH-HHHH------hcC--CcccCCcccceeccc
Confidence 58999999997643331 1211 010 245799999988853
No 382
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=68.20 E-value=2.7 Score=34.61 Aligned_cols=29 Identities=7% Similarity=-0.112 Sum_probs=17.9
Q ss_pred cCCccccccccccccc----ceec-cCCCcccHH
Q 004419 696 CKAILKCGVCFDRPKE----VVIT-KCFHLFCNP 724 (754)
Q Consensus 696 ~~~~~~C~iC~~~~~~----~~~~-~CgH~fC~~ 724 (754)
|-....||-|+..|.+ |++. .||+.|=..
T Consensus 6 lGtKr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 6 LGTKRICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred hCccccCCCcCccccccCCCCccCCCcCCccCcc
Confidence 3445688888887743 5444 477766433
No 383
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.20 E-value=1.3e+02 Score=29.96 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=4.2
Q ss_pred ccccccccc
Q 004419 700 LKCGVCFDR 708 (754)
Q Consensus 700 ~~C~iC~~~ 708 (754)
...+||+-.
T Consensus 174 ~~~~I~~~~ 182 (302)
T PF10186_consen 174 SEYTICGLP 182 (302)
T ss_pred CCeeecCcc
Confidence 344466433
No 384
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=67.78 E-value=2.9 Score=46.18 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=13.6
Q ss_pred ccHHHHHHHhccCCCCccccCcCcCC
Q 004419 721 FCNPCIQRNLEIRHRKCPGCGTAFGQ 746 (754)
Q Consensus 721 fC~~C~~~~~~~~~~~Cp~C~~~~~~ 746 (754)
+|..|...... ..++||.|+.+++.
T Consensus 29 ~Cp~CG~~~~~-~~~fC~~CG~~~~~ 53 (645)
T PRK14559 29 PCPQCGTEVPV-DEAHCPNCGAETGT 53 (645)
T ss_pred cCCCCCCCCCc-ccccccccCCcccc
Confidence 35555554333 45567777665543
No 385
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=67.78 E-value=2.9e+02 Score=33.60 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=10.1
Q ss_pred CCccccCcCcCCCCC
Q 004419 735 RKCPGCGTAFGQSDV 749 (754)
Q Consensus 735 ~~Cp~C~~~~~~~d~ 749 (754)
+.+-++-.||+.-|.
T Consensus 976 ~~~l~lDEp~~~lD~ 990 (1047)
T PRK10246 976 IDSLFLDEGFGTLDS 990 (1047)
T ss_pred CCEEEEeCCCCcCCH
Confidence 345667788887664
No 386
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=67.76 E-value=1.1 Score=43.22 Aligned_cols=43 Identities=26% Similarity=0.452 Sum_probs=24.1
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhcc-------CCCCccccCcCcCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI-------RHRKCPGCGTAFGQ 746 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~-------~~~~Cp~C~~~~~~ 746 (754)
.+.|--|+..|..- +..||..|....+.. ++..=|+|...|.-
T Consensus 242 iLRCh~Cfsit~~m-----~k~FCp~CG~~TL~K~aVsv~~dG~~~~h~k~r~~~ 291 (376)
T KOG2463|consen 242 ILRCHGCFSITSEM-----PKDFCPSCGHKTLTKCAVSVDEDGNGQTHFKKRFQW 291 (376)
T ss_pred eeEeeeeeEecCcc-----chhcccccCCCeeeEEEEEecCCCceeEEeeccccc
Confidence 37999999888542 444555554432210 23335667666653
No 387
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=67.73 E-value=2.2 Score=24.05 Aligned_cols=13 Identities=38% Similarity=0.953 Sum_probs=9.8
Q ss_pred CCccccCcCcCCC
Q 004419 735 RKCPGCGTAFGQS 747 (754)
Q Consensus 735 ~~Cp~C~~~~~~~ 747 (754)
..||+|+..|.+.
T Consensus 3 ~~C~~CgR~F~~~ 15 (25)
T PF13913_consen 3 VPCPICGRKFNPD 15 (25)
T ss_pred CcCCCCCCEECHH
Confidence 4699999888654
No 388
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=67.27 E-value=3.3 Score=36.66 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=21.4
Q ss_pred cccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 699 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
.+.||.|+..|+---.+ . ....||.|+.++..-|
T Consensus 109 ~Y~Cp~c~~r~tf~eA~---------------~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 109 FFICPNMCVRFTFNEAM---------------E-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred eEECCCCCcEeeHHHHH---------------H-cCCcCCCCCCEeeecc
Confidence 36899887766521111 1 2668999998876544
No 389
>PLN02248 cellulose synthase-like protein
Probab=67.26 E-value=3.7 Score=47.35 Aligned_cols=33 Identities=24% Similarity=0.699 Sum_probs=28.3
Q ss_pred cCCCcccHHHHHHHhccCCCCccccCcCcCCCCC
Q 004419 716 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 716 ~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~ 749 (754)
.|++..|..|....... ...||.|+.++...|+
T Consensus 149 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKS-GGICPGCKEPYKVTDL 181 (1135)
T ss_pred cccchhHHhHhhhhhhc-CCCCCCCccccccccc
Confidence 57888899999999986 6789999999977654
No 390
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=67.11 E-value=2 Score=26.91 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=17.1
Q ss_pred cccccc--ccccccceeccCCCcccHHHH
Q 004419 700 LKCGVC--FDRPKEVVITKCFHLFCNPCI 726 (754)
Q Consensus 700 ~~C~iC--~~~~~~~~~~~CgH~fC~~C~ 726 (754)
.-||+| .+.|+-.-.-.=|+.||+.|-
T Consensus 4 ~pCP~CGG~DrFr~~d~~g~G~~~C~~Cg 32 (37)
T smart00778 4 GPCPNCGGSDRFRFDDKDGRGTWFCSVCG 32 (37)
T ss_pred cCCCCCCCccccccccCCCCcCEEeCCCC
Confidence 479999 356652211234888998883
No 391
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=66.94 E-value=1.1e+02 Score=28.64 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004419 429 EIKESERRAHSQAEVLKN 446 (754)
Q Consensus 429 ~l~~~~~~~~~~l~~l~~ 446 (754)
++...++.+-....-|+.
T Consensus 137 DfeqrLnqAIErnAfLES 154 (333)
T KOG1853|consen 137 DFEQRLNQAIERNAFLES 154 (333)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344333333333333
No 392
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.92 E-value=2.7 Score=30.69 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=19.9
Q ss_pred eccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 714 ITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 714 ~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
.+.|||.| .-+..+...+-..||.|+.+|.
T Consensus 15 c~~cg~~~--dvvq~~~ddplt~ce~c~a~~k 44 (82)
T COG2331 15 CTECGNRF--DVVQAMTDDPLTTCEECGARLK 44 (82)
T ss_pred ecccchHH--HHHHhcccCccccChhhChHHH
Confidence 35678876 3445555556677999988664
No 393
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=66.89 E-value=1.4e+02 Score=29.72 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 004419 662 KLEEELMEVNNKV 674 (754)
Q Consensus 662 ~~~~e~~~~~~~l 674 (754)
.+..++..++..+
T Consensus 230 ~L~~qv~klk~qL 242 (302)
T PF09738_consen 230 ELLEQVRKLKLQL 242 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 394
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=66.86 E-value=3.5 Score=45.86 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=35.2
Q ss_pred ccCCccccccccccccccee-ccCCCcccHHHHHHHhcc---CCCCccccCcCcCCCCC
Q 004419 695 DCKAILKCGVCFDRPKEVVI-TKCFHLFCNPCIQRNLEI---RHRKCPGCGTAFGQSDV 749 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~~-~~CgH~fC~~C~~~~~~~---~~~~Cp~C~~~~~~~d~ 749 (754)
.++--+.|++|+.+..-|+. ..|.|.-|+.=..-.-.+ ....||+|...+.-.++
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 34455899999776664433 367777777655444332 23359999988776554
No 395
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=66.82 E-value=3.3 Score=25.46 Aligned_cols=10 Identities=50% Similarity=1.202 Sum_probs=7.7
Q ss_pred CCCccccCcC
Q 004419 734 HRKCPGCGTA 743 (754)
Q Consensus 734 ~~~Cp~C~~~ 743 (754)
...||.|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3479999875
No 396
>PRK01343 zinc-binding protein; Provisional
Probab=66.61 E-value=3.4 Score=28.73 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=11.0
Q ss_pred CCCCccccCcCcCC
Q 004419 733 RHRKCPGCGTAFGQ 746 (754)
Q Consensus 733 ~~~~Cp~C~~~~~~ 746 (754)
+..+||+|+.+|..
T Consensus 8 p~~~CP~C~k~~~~ 21 (57)
T PRK01343 8 PTRPCPECGKPSTR 21 (57)
T ss_pred CCCcCCCCCCcCcC
Confidence 45679999998864
No 397
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=66.16 E-value=70 Score=25.97 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 180 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQ 214 (754)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~e 214 (754)
...+...++.+...+..+...+..+...+..+...
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443444433333333333333
No 398
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=66.10 E-value=3.3 Score=26.11 Aligned_cols=36 Identities=25% Similarity=0.676 Sum_probs=21.1
Q ss_pred ccccccccccc--ceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 701 KCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 701 ~C~iC~~~~~~--~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
.|+.|...+.. .++..=|+.|-..|+. |..|+.++.
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~---------C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECFK---------CSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCCC---------CcccCCcCc
Confidence 47888877765 3333345555554443 666776654
No 399
>PRK11281 hypothetical protein; Provisional
Probab=65.64 E-value=3.1e+02 Score=33.21 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHh
Q 004419 392 EIKSLKALIEKLQK 405 (754)
Q Consensus 392 e~~~l~~~l~~l~~ 405 (754)
....++.++.-+.+
T Consensus 321 ~~~~i~eqi~~l~~ 334 (1113)
T PRK11281 321 SERNIKEQISVLKG 334 (1113)
T ss_pred HHHHHHHHHHHhcc
Confidence 33344444444433
No 400
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=65.62 E-value=1.4e+02 Score=29.25 Aligned_cols=320 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHH
Q 004419 379 QKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVK 458 (754)
Q Consensus 379 ~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 458 (754)
.......+.........+...+.....-+..-................-......+..+-..+........+
T Consensus 23 ~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k~~t~~kek~~~Q~l~kt~larsKLeelCRelQr~nk~~ke-------- 94 (391)
T KOG1850|consen 23 VEEKIKKLAESEKDNAELKIKVLDYDKVLQVKDLTEKKEKRNNQILLKTELARSKLEELCRELQRANKQTKE-------- 94 (391)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004419 459 AANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERD 538 (754)
Q Consensus 459 ~~~~~~~~~~~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~ 538 (754)
+....+...-..-..-...++..+.++...+.........+......+...+..+...+......+......+. +.
T Consensus 95 ---E~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~ 170 (391)
T KOG1850|consen 95 ---EACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LW 170 (391)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_pred HHHHHHhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004419 539 DLNIKLVSESVKTKQVQ--SFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKW 616 (754)
Q Consensus 539 ~~l~~l~~e~~~~~~~~--~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (754)
..+..........-... .....+....-........-++.....-..+..++..+...++.....+.....-...++.
T Consensus 171 ~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~ 250 (391)
T KOG1850|consen 171 EQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQ 250 (391)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHh
Q 004419 617 ELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIK 694 (754)
Q Consensus 617 ~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~~~~~~--~~~~~l~~e~~ 694 (754)
++..+...+..+..+.-............+-.+..+-..-...+..++..|..+..-...|...... ..+..+...
T Consensus 251 E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~-- 328 (391)
T KOG1850|consen 251 EMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQ-- 328 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc--
Q ss_pred ccCCcccccccccccccceeccC
Q 004419 695 DCKAILKCGVCFDRPKEVVITKC 717 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~~~~~~C 717 (754)
..-..-+.....|+.-||
T Consensus 329 -----v~~k~~~~~la~pe~~~~ 346 (391)
T KOG1850|consen 329 -----VSAKNAMKDLATPESKPC 346 (391)
T ss_pred -----cchhhhhhhhcCcccccc
No 401
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=65.61 E-value=3.7 Score=28.95 Aligned_cols=15 Identities=33% Similarity=1.021 Sum_probs=11.4
Q ss_pred CCCccccCcCcCCCC
Q 004419 734 HRKCPGCGTAFGQSD 748 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~d 748 (754)
.+.||.||.++.++.
T Consensus 3 HkHC~~CG~~Ip~~~ 17 (59)
T PF09889_consen 3 HKHCPVCGKPIPPDE 17 (59)
T ss_pred CCcCCcCCCcCCcch
Confidence 567999998887653
No 402
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=65.49 E-value=2.7 Score=27.03 Aligned_cols=15 Identities=53% Similarity=0.986 Sum_probs=10.4
Q ss_pred CCCCccccCcCcCCC
Q 004419 733 RHRKCPGCGTAFGQS 747 (754)
Q Consensus 733 ~~~~Cp~C~~~~~~~ 747 (754)
+.++||.|+..=+.+
T Consensus 10 GirkCp~CGt~NG~R 24 (44)
T PF14952_consen 10 GIRKCPKCGTYNGTR 24 (44)
T ss_pred ccccCCcCcCccCcc
Confidence 577899998654443
No 403
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.39 E-value=3.4 Score=44.43 Aligned_cols=39 Identities=26% Similarity=0.555 Sum_probs=28.4
Q ss_pred cccccccccc----cceeccCCCcccHHHHHHHhccCCCCccccCcC
Q 004419 701 KCGVCFDRPK----EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 701 ~C~iC~~~~~----~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
.|-+|.-+-. -+-.+.|+-.||-.|...+.+. ||.|+..
T Consensus 656 ~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~~~~----~~vC~~~ 698 (717)
T KOG3726|consen 656 TCKVCQLPEDSETDVCRTTFCYTPYCVACSLDYASI----SEVCGPD 698 (717)
T ss_pred HHHHhcCCcCccccccCccccCCcchHhhhhhhhcc----CcccCch
Confidence 6888854432 2445589999999999987553 9999843
No 404
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=65.38 E-value=69 Score=25.62 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 609 VNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELM 668 (754)
Q Consensus 609 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~ 668 (754)
....-++..+-+-+.....+...+...+..+..+..++..+...-..+..++..++.++.
T Consensus 12 aQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 12 AQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444444444444444444444443
No 405
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.22 E-value=2e+02 Score=30.83 Aligned_cols=189 Identities=6% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH---
Q 004419 480 ELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFE--DMQTQNQHLLQQVAERDDLNIKLVSESVKTKQV--- 554 (754)
Q Consensus 480 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~e~~~~~~~--- 554 (754)
.+............-+..++.....++...+..+..+..... .......-...++..+...+.....+...+...
T Consensus 161 ~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 240 (444)
T TIGR03017 161 NIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGG 240 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004419 555 ---------------QSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELA 619 (754)
Q Consensus 555 ---------------~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (754)
+..+..++..++.++..+...+....-.+..+..++..+...+.. ....-...+...+.
T Consensus 241 ~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~------e~~~~~~~~~~~~~ 314 (444)
T TIGR03017 241 SSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA------EIKKVTSSVGTNSR 314 (444)
T ss_pred cCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 620 DAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELT 678 (754)
Q Consensus 620 ~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~ 678 (754)
.+......+...+......+..+... ..++..++....-.+..+..+..++....
T Consensus 315 ~~~~~~~~l~~~l~~~~~~~~~l~~~----~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 315 ILKQREAELREALENQKAKVLELNRQ----RDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 406
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=64.92 E-value=2.3 Score=35.45 Aligned_cols=33 Identities=24% Similarity=0.553 Sum_probs=24.5
Q ss_pred ccccccccccccceeccCCCcccH-HHHHHHhccC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCN-PCIQRNLEIR 733 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~-~C~~~~~~~~ 733 (754)
..|.||+ .|.....+.||-.||+ .|...+..+|
T Consensus 119 ~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~HneTR 152 (156)
T KOG3362|consen 119 KFCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNETR 152 (156)
T ss_pred hhhhhcC-CCchhHHHhcCCceeechhhhhccccc
Confidence 4799999 6666667799999864 6887775543
No 407
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=64.72 E-value=3.5 Score=39.85 Aligned_cols=41 Identities=27% Similarity=0.534 Sum_probs=26.8
Q ss_pred ccccccccccc-cee--ccCCCcccHHHHHHHhccCCCCccccCc
Q 004419 701 KCGVCFDRPKE-VVI--TKCFHLFCNPCIQRNLEIRHRKCPGCGT 742 (754)
Q Consensus 701 ~C~iC~~~~~~-~~~--~~CgH~fC~~C~~~~~~~~~~~Cp~C~~ 742 (754)
.|-.|+..... ++. -.|-|.||.+|---... .-..||.|..
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHe-sLh~CpgCeh 375 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDVFIHE-SLHNCPGCEH 375 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchHHHHh-hhhcCCCcCC
Confidence 37778443332 222 27999999999665444 4667999973
No 408
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=64.63 E-value=3.3 Score=41.02 Aligned_cols=34 Identities=18% Similarity=0.418 Sum_probs=25.2
Q ss_pred Ccccccccccccccc--eeccCCCcccHHHHHHHhc
Q 004419 698 AILKCGVCFDRPKEV--VITKCFHLFCNPCIQRNLE 731 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~--~~~~CgH~fC~~C~~~~~~ 731 (754)
....||||+--|-.. .+.-|..+.|..|+-.+..
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~ 108 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPFGC 108 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecccC
Confidence 447899998777552 2336899999999987653
No 409
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.57 E-value=1.9e+02 Score=30.51 Aligned_cols=9 Identities=0% Similarity=-0.385 Sum_probs=5.2
Q ss_pred ccccccccc
Q 004419 703 GVCFDRPKE 711 (754)
Q Consensus 703 ~iC~~~~~~ 711 (754)
+||+++|.+
T Consensus 381 ~i~~~ny~~ 389 (596)
T KOG4360|consen 381 VIPGSNYSS 389 (596)
T ss_pred cCCcchhhh
Confidence 456666654
No 410
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.24 E-value=4.7 Score=28.45 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=10.2
Q ss_pred CCCccccCcCcCCC
Q 004419 734 HRKCPGCGTAFGQS 747 (754)
Q Consensus 734 ~~~Cp~C~~~~~~~ 747 (754)
.++||+|++++.-.
T Consensus 7 ~v~CP~Cgkpv~w~ 20 (65)
T COG3024 7 TVPCPTCGKPVVWG 20 (65)
T ss_pred cccCCCCCCccccc
Confidence 45788888877653
No 411
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=64.23 E-value=3.5 Score=31.64 Aligned_cols=54 Identities=19% Similarity=0.427 Sum_probs=28.3
Q ss_pred cccccccccccceeccCCC-------cccHHHHHHHh--ccC-CCCccccCcCcCCC--CCcccCC
Q 004419 701 KCGVCFDRPKEVVITKCFH-------LFCNPCIQRNL--EIR-HRKCPGCGTAFGQS--DVRFVKI 754 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~~CgH-------~fC~~C~~~~~--~~~-~~~Cp~C~~~~~~~--d~~~~~~ 754 (754)
.|--|.+.+.+-.+.|=|| +.|..|..... ..+ ...||.|+.+|-++ ....+||
T Consensus 37 aCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~Ck~H~~~YF 102 (105)
T COG4357 37 ACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPGCKNHKHIYF 102 (105)
T ss_pred hHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCcccccccceee
Confidence 4555555554433333333 34555654332 112 34599999999876 3444443
No 412
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=64.13 E-value=1.6e+02 Score=29.21 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=5.0
Q ss_pred CccccCcCcC
Q 004419 736 KCPGCGTAFG 745 (754)
Q Consensus 736 ~Cp~C~~~~~ 745 (754)
+=|.|+..++
T Consensus 380 kGpf~~hVig 389 (401)
T PF06785_consen 380 KGPFRNHVIG 389 (401)
T ss_pred CcchHHHHHh
Confidence 4455554443
No 413
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=63.89 E-value=2.6 Score=47.02 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=25.0
Q ss_pred ccccccccccccc-----ceec--cCCCcccHHHHHHHhccCCCCccccCcC
Q 004419 699 ILKCGVCFDRPKE-----VVIT--KCFHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 699 ~~~C~iC~~~~~~-----~~~~--~CgH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
.+.|..|+-.+.= +.+. .-|.++|..|.... . ....||.|+..
T Consensus 435 ~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~-~-~p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQE-P-IPQSCPECGSE 484 (730)
T ss_pred eeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCC-C-CCCCCCCCCCC
Confidence 3567777665531 1111 23557788888762 2 34469999865
No 414
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=63.71 E-value=1.5 Score=37.42 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=25.1
Q ss_pred cccccc-cc----ccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCC
Q 004419 702 CGVCFD-RP----KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 702 C~iC~~-~~----~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
||+|+. .. .+....-|||.+-. .+ +...||.|+..|-..+
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~G~~~~v-~~------~~~~C~~CGe~~~~~e 45 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYKGESITI-GV------PGWYCPACGEELLDPE 45 (127)
T ss_pred CCCCCCccceeeeecceEEEcCEEEEE-ee------eeeECCCCCCEEEcHH
Confidence 999974 22 22344568887654 22 3446999998776554
No 415
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=63.52 E-value=4.4 Score=36.32 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=8.4
Q ss_pred CCCccccCcCcC
Q 004419 734 HRKCPGCGTAFG 745 (754)
Q Consensus 734 ~~~Cp~C~~~~~ 745 (754)
...|||||+.-+
T Consensus 189 LArCPHCrKvSs 200 (275)
T KOG4684|consen 189 LARCPHCRKVSS 200 (275)
T ss_pred HhcCCcccchhh
Confidence 335999997544
No 416
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=63.50 E-value=55 Score=23.85 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhh
Q 004419 197 RLSEVEEAQQDNINLSKQLENLQNELNDDKYVHS 230 (754)
Q Consensus 197 ~~~e~~~l~~~~~~~~~el~~l~~~l~~~~~~~~ 230 (754)
...++..+.+++..+...+..+...|.+...+..
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~k 35 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEK 35 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 3566777888888888888888888887444433
No 417
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=63.20 E-value=0.72 Score=40.91 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=27.5
Q ss_pred Ccccccccccccccceec----cCCC----cccHHHHHHHhcc-------------CCCCccccCcCcCCC
Q 004419 698 AILKCGVCFDRPKEVVIT----KCFH----LFCNPCIQRNLEI-------------RHRKCPGCGTAFGQS 747 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~----~CgH----~fC~~C~~~~~~~-------------~~~~Cp~C~~~~~~~ 747 (754)
..++|-||+..|.-...+ +|-. -.|..|...+.++ |..+|-.|...|.++
T Consensus 116 d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr 186 (267)
T KOG3576|consen 116 DSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR 186 (267)
T ss_pred CeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence 347899999998642222 3422 1244444333221 344677787777654
No 418
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=62.85 E-value=2.3 Score=35.45 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=6.1
Q ss_pred ccccccccc
Q 004419 700 LKCGVCFDR 708 (754)
Q Consensus 700 ~~C~iC~~~ 708 (754)
..||.|+-+
T Consensus 29 ~hCp~Cg~P 37 (131)
T COG1645 29 KHCPKCGTP 37 (131)
T ss_pred hhCcccCCc
Confidence 368888654
No 419
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.70 E-value=2.4 Score=27.63 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=9.4
Q ss_pred CCCccccCcCcC
Q 004419 734 HRKCPGCGTAFG 745 (754)
Q Consensus 734 ~~~Cp~C~~~~~ 745 (754)
..-||.|..||+
T Consensus 12 ~KICpvCqRPFs 23 (54)
T COG4338 12 DKICPVCQRPFS 23 (54)
T ss_pred hhhhhhhcCchH
Confidence 445999999886
No 420
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=62.31 E-value=2.6e+02 Score=31.11 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004419 490 RDVMELEEAMKSKDREAEAYIAEMETIGQAFEDM 523 (754)
Q Consensus 490 ~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~ 523 (754)
.-...++..+......+-........+...++-.
T Consensus 91 d~ndklE~~Lankda~lrq~eekn~slqerLela 124 (916)
T KOG0249|consen 91 DLNDKLENELANKDADLRQNEEKNRSLQERLELA 124 (916)
T ss_pred cchHHHHHHHhCcchhhchhHHhhhhhhHHHHHh
Confidence 3344455555555555555555555555444433
No 421
>PRK03922 hypothetical protein; Provisional
Probab=61.94 E-value=4.2 Score=32.26 Aligned_cols=15 Identities=33% Similarity=0.877 Sum_probs=10.9
Q ss_pred CCCCccccCcCcCCC
Q 004419 733 RHRKCPGCGTAFGQS 747 (754)
Q Consensus 733 ~~~~Cp~C~~~~~~~ 747 (754)
+.+.||.|+.+|++-
T Consensus 48 G~~~cP~cge~~~~a 62 (113)
T PRK03922 48 GLTICPKCGEPFDSA 62 (113)
T ss_pred CcccCCCCCCcCCcE
Confidence 345688888888764
No 422
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.81 E-value=58 Score=23.49 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 004419 83 EAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAEL 133 (754)
Q Consensus 83 ~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el 133 (754)
.|.-+.-++.++..+...+..+..........+..+...++.+....+..+
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444333333333333344333344444444433333333
No 423
>PF15294 Leu_zip: Leucine zipper
Probab=61.81 E-value=1.6e+02 Score=28.68 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHhH
Q 004419 474 AEAEIIELVAKLDASE 489 (754)
Q Consensus 474 ~~~el~~l~~~~~~~~ 489 (754)
+..+|..++.+...+.
T Consensus 130 l~kEi~rLq~EN~kLk 145 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLK 145 (278)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444433333333
No 424
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=61.75 E-value=2.5e+02 Score=30.72 Aligned_cols=7 Identities=0% Similarity=-0.164 Sum_probs=3.8
Q ss_pred ccccccc
Q 004419 700 LKCGVCF 706 (754)
Q Consensus 700 ~~C~iC~ 706 (754)
+.+.++.
T Consensus 394 F~ve~~~ 400 (557)
T COG0497 394 FTVELKP 400 (557)
T ss_pred EEEEecc
Confidence 5555554
No 425
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=61.55 E-value=4 Score=29.47 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=21.8
Q ss_pred Cccccc--cccccc-------ccceec-cCCCcccHHHHHHHhc
Q 004419 698 AILKCG--VCFDRP-------KEVVIT-KCFHLFCNPCIQRNLE 731 (754)
Q Consensus 698 ~~~~C~--iC~~~~-------~~~~~~-~CgH~fC~~C~~~~~~ 731 (754)
...-|| -|...+ ...|.- .|||.||..|...|..
T Consensus 17 ~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 17 DLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred CccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCCC
Confidence 345688 673322 114444 6899999999887743
No 426
>KOG4517 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.42 E-value=3.2 Score=32.78 Aligned_cols=42 Identities=31% Similarity=0.467 Sum_probs=24.6
Q ss_pred cccccccccccceeccCCC-------cccHHHHHHHhccCCCCccccCcCcC
Q 004419 701 KCGVCFDRPKEVVITKCFH-------LFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~~CgH-------~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
.||.|.-.+-....+.||- -|-..|.... |.+.||.|+..|+
T Consensus 69 ~~P~~g~g~lEdtftalgi~~ai~~fP~g~ic~~al---r~rrc~ncg~~f~ 117 (117)
T KOG4517|consen 69 GCPGCGYGVLEDTFTALGIFLAIILFPFGFICCFAL---RKRRCPNCGPTFA 117 (117)
T ss_pred CCCccccchhhhHHHHhhHHHHHHHhhhHHHhhHhh---hhccCCCcccccC
Confidence 5666654444444444443 1345555544 5667999998874
No 427
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=61.22 E-value=1.6e+02 Score=28.39 Aligned_cols=7 Identities=0% Similarity=-0.548 Sum_probs=2.8
Q ss_pred cCCCccc
Q 004419 716 KCFHLFC 722 (754)
Q Consensus 716 ~CgH~fC 722 (754)
.||+..+
T Consensus 248 ~~~~~~~ 254 (305)
T PF15290_consen 248 ELGSSAL 254 (305)
T ss_pred cCCchhh
Confidence 3444433
No 428
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=60.67 E-value=1.5e+02 Score=27.73 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004419 103 DQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLK 144 (754)
Q Consensus 103 ~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~ 144 (754)
.+++.....+...++....+..+.+.+..++..+..+...++
T Consensus 165 ~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 165 TELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444444444444
No 429
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=60.55 E-value=1.9 Score=35.68 Aligned_cols=26 Identities=19% Similarity=0.462 Sum_probs=14.8
Q ss_pred CCcccHHHHHHHhcc-CCCCccccCcC
Q 004419 718 FHLFCNPCIQRNLEI-RHRKCPGCGTA 743 (754)
Q Consensus 718 gH~fC~~C~~~~~~~-~~~~Cp~C~~~ 743 (754)
+..+|..|...|.-. ....||.|+.+
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (115)
T TIGR00100 69 VECECEDCSEEVSPEIDLYRCPKCHGI 95 (115)
T ss_pred cEEEcccCCCEEecCCcCccCcCCcCC
Confidence 334566665444332 23459999965
No 430
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=60.25 E-value=3.2 Score=34.17 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=19.6
Q ss_pred cccHHHHHHHhcc--CCCCccccCcCcCCC
Q 004419 720 LFCNPCIQRNLEI--RHRKCPGCGTAFGQS 747 (754)
Q Consensus 720 ~fC~~C~~~~~~~--~~~~Cp~C~~~~~~~ 747 (754)
..|.+|..+|+.. ....||.|+..|...
T Consensus 10 r~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred ccCCCcCccccccCCCCccCCCcCCccCcc
Confidence 3477787777764 234699999887654
No 431
>PRK12495 hypothetical protein; Provisional
Probab=59.99 E-value=12 Score=34.25 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=5.9
Q ss_pred ccccccccc
Q 004419 700 LKCGVCFDR 708 (754)
Q Consensus 700 ~~C~iC~~~ 708 (754)
..|+.|+..
T Consensus 43 ~hC~~CG~P 51 (226)
T PRK12495 43 AHCDECGDP 51 (226)
T ss_pred hhcccccCc
Confidence 568777544
No 432
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=59.85 E-value=1.9e+02 Score=28.70 Aligned_cols=145 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHhhHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004419 28 LASRHSSAR---ELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQ 104 (754)
Q Consensus 28 l~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 104 (754)
|+.++.++. ..++++...+..-..+.+.|...-+. |....-....-+.+.......++.-+..+..+
T Consensus 73 lq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqk----------L~nqL~~~~~vf~k~k~~~q~LE~li~~~~EE 142 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQK----------LKNQLFHVREVFMKTKGDIQHLEGLIRHLREE 142 (401)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcCccchhhhhhcCCCCCCcCccchhhcHHHHH
Q 004419 105 IENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELK 184 (754)
Q Consensus 105 l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 184 (754)
-..++-+++.+..+..+.+.+-..+..++.+...-...|..+.....-.+. ..+....
T Consensus 143 n~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~----------------------~ml~kRQ 200 (401)
T PF06785_consen 143 NQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQH----------------------SMLDKRQ 200 (401)
T ss_pred HHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch----------------------hhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004419 185 DSVEEAKILAADRLSEVEEA 204 (754)
Q Consensus 185 ~~l~~~~~~~~~~~~e~~~l 204 (754)
..|..+...++++.-++..+
T Consensus 201 ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 433
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=59.70 E-value=2.1e+02 Score=29.34 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004419 465 AACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKL 544 (754)
Q Consensus 465 ~~~~~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l 544 (754)
..+..........+..++.++.+.......+..++..+..+...+.+.+...+..+..++.+..++..+.-........+
T Consensus 2 ~~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~ 81 (459)
T KOG0288|consen 2 APLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTL 81 (459)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 545 VSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMK 591 (754)
Q Consensus 545 ~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 591 (754)
......+++.--....++..+..+...+....-.+............
T Consensus 82 t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~ 128 (459)
T KOG0288|consen 82 TVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAER 128 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH
No 434
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=59.64 E-value=3.3 Score=28.54 Aligned_cols=24 Identities=25% Similarity=0.638 Sum_probs=0.0
Q ss_pred ccHHHHHHHhccCCCCccccCcCc
Q 004419 721 FCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 721 fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
||..|....-......||-||.|+
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipt 24 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPT 24 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcC
No 435
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=59.46 E-value=21 Score=40.86 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCcccccccccccccceecc-CCCcccHHHHHHHhccCCCCccccCcC
Q 004419 665 EELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITK-CFHLFCNPCIQRNLEIRHRKCPGCGTA 743 (754)
Q Consensus 665 ~e~~~~~~~l~~l~~~~~~~~~~~l~~e~~~~~~~~~C~iC~~~~~~~~~~~-CgH~fC~~C~~~~~~~~~~~Cp~C~~~ 743 (754)
+....+-.+........ ...++.+.+.-..+.-|+-...+++||++| -||+.|.+=|..+.- ....-|.||.|
T Consensus 841 e~~s~la~~~~~~~~~~-----~~eee~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlL-s~~tdPFNR~p 914 (943)
T KOG2042|consen 841 EEFSELAERVEATASID-----AEEEEELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLL-SDCTDPFNREP 914 (943)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHh-cCCCCcccccc
Q ss_pred cCCCCCccc
Q 004419 744 FGQSDVRFV 752 (754)
Q Consensus 744 ~~~~d~~~~ 752 (754)
.+-.++.++
T Consensus 915 Lt~d~v~pn 923 (943)
T KOG2042|consen 915 LTEDMVSPN 923 (943)
T ss_pred CchhhcCCC
No 436
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=59.44 E-value=1.8e+02 Score=28.29 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 513 METIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA 592 (754)
Q Consensus 513 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (754)
+..+..........-......+..+..+-..+..++..+..++..+...+..+...+......+..+...+..+......
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHH
Q 004419 593 CLTEALRYNSEDRHLAV-----NLETTKWELADAEKELKW 627 (754)
Q Consensus 593 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~ 627 (754)
+..-+..+...+..+.. ..+.-..++..+...+..
T Consensus 103 l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 103 LVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDD 142 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhc
No 437
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=59.10 E-value=3 Score=38.41 Aligned_cols=43 Identities=19% Similarity=0.378 Sum_probs=0.0
Q ss_pred ccccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcC
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
+.|.-|....+......=|.+||..|-+.. +.+-|..|+.|+.
T Consensus 164 FkCt~C~keL~sdaRevk~eLyClrChD~m---gipiCgaC~rpIe 206 (332)
T KOG2272|consen 164 FKCTTCGKELTSDAREVKGELYCLRCHDKM---GIPICGACRRPIE 206 (332)
T ss_pred eecccccccccchhhhhccceecccccccc---CCcccccccCchH
No 438
>PLN03086 PRLI-interacting factor K; Provisional
Probab=59.08 E-value=7.9 Score=41.77 Aligned_cols=50 Identities=16% Similarity=0.332 Sum_probs=0.0
Q ss_pred ccCCccccccccccccc------------ceeccCCCcccHHHHHHHhc----cCCCCccccCcCc
Q 004419 695 DCKAILKCGVCFDRPKE------------VVITKCFHLFCNPCIQRNLE----IRHRKCPGCGTAF 744 (754)
Q Consensus 695 ~~~~~~~C~iC~~~~~~------------~~~~~CgH~fC~~C~~~~~~----~~~~~Cp~C~~~~ 744 (754)
.+..-+.|+.|...|.. ++..|||..|-..-+..+.. .+...||.|+..|
T Consensus 449 el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v 514 (567)
T PLN03086 449 EAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMV 514 (567)
T ss_pred ccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCcc
No 439
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=58.94 E-value=2.2 Score=35.17 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=0.0
Q ss_pred ccHHHHHHHhc-cCCCCccccCcC
Q 004419 721 FCNPCIQRNLE-IRHRKCPGCGTA 743 (754)
Q Consensus 721 fC~~C~~~~~~-~~~~~Cp~C~~~ 743 (754)
+|..|...|.. .....||.|+.+
T Consensus 72 ~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 72 WCWDCSQVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EcccCCCEEecCCcCccCcCCCCC
No 440
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=58.64 E-value=1.8e+02 Score=28.10 Aligned_cols=107 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 004419 569 LQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTED 648 (754)
Q Consensus 569 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~ 648 (754)
++...--+..+..++...+..+.+-..+|..+..++.+..+..-.-+=..-+.+-.+.+.+.+|..+..-+..++..+.+
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 649 MRKELENERNERKKLEEELMEVNNKVA 675 (754)
Q Consensus 649 ~~~~l~~~~~~~~~~~~e~~~~~~~l~ 675 (754)
...-+.+.=..+.--...++.+-.-++
T Consensus 143 kDkGiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 143 KDKGIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred hhhhHHHHHhhhhhhHhHHHHHHHHHH
No 441
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=57.84 E-value=3.1e+02 Score=30.67 Aligned_cols=253 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH-------H
Q 004419 425 RDLMEIKESERRAHSQAEVLKNALDEHSLEL---RVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVM-------E 494 (754)
Q Consensus 425 ~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~~~el~~l~~~~~~~~~~~~-------~ 494 (754)
..+..+-.++.....+...+-..+...-.++ .+..+......+...+...+.++..+-..+.....-.. .
T Consensus 21 ~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~t 100 (660)
T KOG4302|consen 21 NELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGT 100 (660)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCcc
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHH
Q 004419 495 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTK-QVQSFLLSEKQALARQLQQIN 573 (754)
Q Consensus 495 l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~~~~~-~~~~~l~~e~~~l~~~l~~~~ 573 (754)
|...+..+...+..+..+..+-..++.++..++..+-..+.........+..+-..+. ..+..+...+..++.+...-.
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rl 180 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRL 180 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004419 574 ALVESAKLRILHAEEQM------------------------KACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLK 629 (754)
Q Consensus 574 ~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 629 (754)
..+..+...|..+-..+ .-....+..+..-+..+.......-..+..+..++..|.
T Consensus 181 ekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LW 260 (660)
T KOG4302|consen 181 EKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELW 260 (660)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhcHHHHHHH---------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 004419 630 SAVTSSDKEYEQI---------------QRKTEDMRKELENERN-ERKKLEEELMEVNNKVAEL 677 (754)
Q Consensus 630 ~~~~~~~~~~~~l---------------~~~~~~~~~~l~~~~~-~~~~~~~e~~~~~~~l~~l 677 (754)
..+.......... .+.+..+..++.++.. +...+.+-+...+.+|..+
T Consensus 261 n~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel 324 (660)
T KOG4302|consen 261 NLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRSELEEL 324 (660)
T ss_pred HhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 442
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=57.80 E-value=3.6 Score=41.25 Aligned_cols=33 Identities=18% Similarity=0.439 Sum_probs=0.0
Q ss_pred ccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 721 FCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 721 fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
||..|-...-. |...|+.|+.|+...|.|..|+
T Consensus 115 ~C~~C~~~rPp-Rs~HCsvC~~CV~rfDHHC~Wv 147 (299)
T KOG1311|consen 115 YCDTCQLYRPP-RSSHCSVCNNCVLRFDHHCPWL 147 (299)
T ss_pred EcCcCcccCCC-CcccchhhcccccccCCCCCCc
No 443
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=57.73 E-value=17 Score=32.54 Aligned_cols=56 Identities=21% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCcccccccccccccceeccCCCcccHHHHHHHhccCCCCccc
Q 004419 660 RKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPG 739 (754)
Q Consensus 660 ~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~e~~~~~~~~~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~ 739 (754)
..+....++.++..+......+. +.||.|.-.|. .+.-... ..+||.
T Consensus 91 ~~~~~~~le~Lk~~le~~~~~~~-----------------y~C~~~~~r~s---------------fdeA~~~-~F~Cp~ 137 (176)
T COG1675 91 KGKKRKILEKLKRKLEKETENNY-----------------YVCPNCHVKYS---------------FDEAMEL-GFTCPK 137 (176)
T ss_pred HHHHHHHHHHHHHHHHhhccCCc-----------------eeCCCCCCccc---------------HHHHHHh-CCCCCC
Q ss_pred cCcCcCCCC
Q 004419 740 CGTAFGQSD 748 (754)
Q Consensus 740 C~~~~~~~d 748 (754)
|+..+...|
T Consensus 138 Cg~~L~~~d 146 (176)
T COG1675 138 CGEDLEEYD 146 (176)
T ss_pred CCchhhhcc
No 444
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=57.71 E-value=8.4 Score=27.06 Aligned_cols=34 Identities=26% Similarity=0.686 Sum_probs=0.0
Q ss_pred ccccccceeccC---CCcccHHHHHHHhccCCCCccccC
Q 004419 706 FDRPKEVVITKC---FHLFCNPCIQRNLEIRHRKCPGCG 741 (754)
Q Consensus 706 ~~~~~~~~~~~C---gH~fC~~C~~~~~~~~~~~Cp~C~ 741 (754)
+..-..||.+.| |-.+|..= +.+...... ||.|+
T Consensus 24 f~g~~~PvtI~CP~HG~~~~s~~-~~~~~sk~G-CP~Cg 60 (60)
T PF05265_consen 24 FSGVATPVTIRCPKHGNFTCSTF-NSFIKSKHG-CPECG 60 (60)
T ss_pred EeCCCCceEEECCCCCcEEeccH-HhhhhhccC-CCCCC
No 445
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=57.66 E-value=2.9 Score=49.24 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=0.0
Q ss_pred cccccccccccceec-cCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccC
Q 004419 701 KCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 753 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~ 753 (754)
.|.-|...+...-.. .||..||..|-++... +.+.|-.|+.....+++.++|
T Consensus 7 ~~~~~~t~~~~~~~~~~~g~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~ 59 (1598)
T KOG0230|consen 7 VCYDCDTSVNRRHHCRVCGRVFCSKCQDSPET-SIRVCNECRGQWEQGNVAPSD 59 (1598)
T ss_pred chhccccccccCCCCcccCceeccccCCCCcc-ceeehhhhhhhccccCCCCcc
No 446
>PRK04406 hypothetical protein; Provisional
Probab=57.58 E-value=80 Score=23.78 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004419 482 VAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERD 538 (754)
Q Consensus 482 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~ 538 (754)
...+..+...+..|+..+.-.+.-++.|+..+......+..+...+..+...+..+.
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 447
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=57.57 E-value=1.9e+02 Score=28.01 Aligned_cols=130 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 004419 565 LARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQR 644 (754)
Q Consensus 565 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~ 644 (754)
+......+.--++....--...+..+.....-+.++..++. ..++.+..+-.-+..++..+-++...+..++..++.
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit---~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e 294 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEIT---KALEKIASREKSLNNQLASLMQKFRRATDTLSELRE 294 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHhccC
Q 004419 645 KTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGE-AAIQKLQDEIKDCK 697 (754)
Q Consensus 645 ~~~~~~~~l~~~~~~~~~~~~e~~~~~~~l~~l~~~~~~-~~~~~l~~e~~~~~ 697 (754)
........+..-...+.++-.+++.++.++++-.+.... +.+..++.-+..++
T Consensus 295 ~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk 348 (384)
T KOG0972|consen 295 KYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLK 348 (384)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHH
No 448
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=57.23 E-value=4.2 Score=31.57 Aligned_cols=43 Identities=35% Similarity=0.647 Sum_probs=0.0
Q ss_pred ccccccccccceeccCCC---cccHHH-HHHHhccCCCCccccCcCc
Q 004419 702 CGVCFDRPKEVVITKCFH---LFCNPC-IQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 702 C~iC~~~~~~~~~~~CgH---~fC~~C-~~~~~~~~~~~Cp~C~~~~ 744 (754)
|+.|.-..-....+.||= +||+.+ +-=++..+.++|+.|+..|
T Consensus 52 Cp~CrvG~le~~ft~~Gi~~AI~fFPiGilcc~~~r~~rC~nCG~~f 98 (98)
T PF10164_consen 52 CPACRVGVLEDSFTCCGILCAIFFFPIGILCCLAMRERRCSNCGATF 98 (98)
T ss_pred CCCCceeeecccccHHHHHHHHHHHhhHHHHhhhcCccccCCCCccC
No 449
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=57.22 E-value=1.3e+02 Score=26.01 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q 004419 482 VAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQ--------------------------------- 528 (754)
Q Consensus 482 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~--------------------------------- 528 (754)
+..+..+...+..+...+..+...+..+...+.++...++.+.....
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Q ss_pred ------HHHHHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 529 ------HLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINAL 575 (754)
Q Consensus 529 ------~~~~~~~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~ 575 (754)
.....+..++..+..+...+..+...+..+...+..+...+..+...
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=57.21 E-value=6.7 Score=38.91 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=0.0
Q ss_pred ccccccccccceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 702 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 702 C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
|++-+-+|.+||.++-|-+|-..-|-.|+. ...+-|.-+.+.+..|+.++-|
T Consensus 43 C~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lk-k~g~nP~tG~kl~~~dLIkL~F 94 (518)
T KOG0883|consen 43 CSLTMLPFEDPVCTVDGTVFDLTAIVPWLK-KHGTNPITGQKLDGKDLIKLKF 94 (518)
T ss_pred ceeccccccCcccccCCcEEeeehhhHHHH-HcCCCCCCCCccccccceeeee
No 451
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=56.99 E-value=6.3 Score=42.98 Aligned_cols=44 Identities=25% Similarity=0.653 Sum_probs=0.0
Q ss_pred ccccccccccc----------ceeccCCC--------------------cccHHHHHHHhccCCCC-------ccccCcC
Q 004419 701 KCGVCFDRPKE----------VVITKCFH--------------------LFCNPCIQRNLEIRHRK-------CPGCGTA 743 (754)
Q Consensus 701 ~C~iC~~~~~~----------~~~~~CgH--------------------~fC~~C~~~~~~~~~~~-------Cp~C~~~ 743 (754)
.|+-|.+.+.+ ...|.||- ..|..|...+.+.-+|. ||.|+..
T Consensus 103 ~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~CGP~ 182 (750)
T COG0068 103 TCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKCGPH 182 (750)
T ss_pred hhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcccCCC
Q ss_pred c
Q 004419 744 F 744 (754)
Q Consensus 744 ~ 744 (754)
+
T Consensus 183 ~ 183 (750)
T COG0068 183 L 183 (750)
T ss_pred e
No 452
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=56.97 E-value=6.4 Score=27.47 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHhccCCCCcccc
Q 004419 717 CFHLFCNPCIQRNLEIRHRKCPGC 740 (754)
Q Consensus 717 CgH~fC~~C~~~~~~~~~~~Cp~C 740 (754)
|||.|=.+=..+. .+...||.|
T Consensus 34 Cgh~w~~~v~~R~--~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDRT--RRGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhhc--cCCCCCCCC
No 453
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=56.79 E-value=3.1 Score=26.79 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHhccCCCCccccCcCc
Q 004419 717 CFHLFCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 717 CgH~fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
|||.|=..-.... .....||.|+..+
T Consensus 11 Cg~~fe~~~~~~~--~~~~~CP~Cg~~~ 36 (41)
T smart00834 11 CGHTFEVLQKISD--DPLATCPECGGDV 36 (41)
T ss_pred CCCEEEEEEecCC--CCCCCCCCCCCcc
No 454
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=56.72 E-value=6.7 Score=25.04 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=0.0
Q ss_pred cccccccccc-ceecc-CCCcccHH
Q 004419 702 CGVCFDRPKE-VVITK-CFHLFCNP 724 (754)
Q Consensus 702 C~iC~~~~~~-~~~~~-CgH~fC~~ 724 (754)
|.+|.....- |..-+ ||+.||..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
No 455
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=56.35 E-value=9.6 Score=30.93 Aligned_cols=39 Identities=31% Similarity=0.663 Sum_probs=0.0
Q ss_pred cccccccccceeccCCCcccHHH--------HHHHhccCCCCccccC
Q 004419 703 GVCFDRPKEVVITKCFHLFCNPC--------IQRNLEIRHRKCPGCG 741 (754)
Q Consensus 703 ~iC~~~~~~~~~~~CgH~fC~~C--------~~~~~~~~~~~Cp~C~ 741 (754)
.+|......+.-..|+-.||..| +......+.-.||.|+
T Consensus 22 ~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Cr 68 (105)
T PF10497_consen 22 TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCR 68 (105)
T ss_pred eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCC
No 456
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=56.28 E-value=3.3 Score=36.64 Aligned_cols=22 Identities=27% Similarity=0.668 Sum_probs=0.0
Q ss_pred cHHHHHHHhccCCCCccccCcCc
Q 004419 722 CNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 722 C~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
|..|..-+- .+...||.||.++
T Consensus 142 C~GC~~~f~-~~~~~Cp~CG~~~ 163 (177)
T COG1439 142 CHGCKRIFP-EPKDFCPICGSPL 163 (177)
T ss_pred EecCceecC-CCCCcCCCCCCce
No 457
>PRK02119 hypothetical protein; Provisional
Probab=56.09 E-value=84 Score=23.53 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004419 484 KLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERD 538 (754)
Q Consensus 484 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~ 538 (754)
.+..+...+..|+..+.-.+.-++.|+..+....+.+..+...+..+...+..+.
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 458
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=56.00 E-value=3.3 Score=23.64 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=0.0
Q ss_pred ccccCcCcCCCCC
Q 004419 737 CPGCGTAFGQSDV 749 (754)
Q Consensus 737 Cp~C~~~~~~~d~ 749 (754)
||+|...+....+
T Consensus 4 CPiC~~~v~~~~i 16 (26)
T smart00734 4 CPVCFREVPENLI 16 (26)
T ss_pred CCCCcCcccHHHH
No 459
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=55.67 E-value=5.6 Score=42.99 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=0.0
Q ss_pred hccCCccccccccccccc--------ceeccCCCc------------c-cHHHHHHHhcc-------------CCCCccc
Q 004419 694 KDCKAILKCGVCFDRPKE--------VVITKCFHL------------F-CNPCIQRNLEI-------------RHRKCPG 739 (754)
Q Consensus 694 ~~~~~~~~C~iC~~~~~~--------~~~~~CgH~------------f-C~~C~~~~~~~-------------~~~~Cp~ 739 (754)
......+.|+.|.-.|.. ....+||-. | |..|...|--. ...-||.
T Consensus 235 ekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpn 314 (1007)
T KOG3623|consen 235 EKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPN 314 (1007)
T ss_pred hhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcc
Q ss_pred cCcCcC
Q 004419 740 CGTAFG 745 (754)
Q Consensus 740 C~~~~~ 745 (754)
|++.|+
T Consensus 315 CkKRFS 320 (1007)
T KOG3623|consen 315 CKKRFS 320 (1007)
T ss_pred cccccc
No 460
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=55.45 E-value=4.2 Score=22.09 Aligned_cols=10 Identities=50% Similarity=1.381 Sum_probs=0.0
Q ss_pred ccccCcCcCC
Q 004419 737 CPGCGTAFGQ 746 (754)
Q Consensus 737 Cp~C~~~~~~ 746 (754)
||.|+..|..
T Consensus 3 C~~C~~~f~~ 12 (23)
T PF00096_consen 3 CPICGKSFSS 12 (23)
T ss_dssp ETTTTEEESS
T ss_pred CCCCCCccCC
No 461
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=55.36 E-value=3.6e+02 Score=31.21 Aligned_cols=145 Identities=12% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004419 23 YVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYA 102 (754)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 102 (754)
|++..+..+.....+.+..+...+..++.++...+..+..+....+.+ .+.......-..+..++.++..+......+.
T Consensus 253 Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~-d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~ 331 (726)
T PRK09841 253 YLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSV-DLNLEAKAVLEQIVNVDNQLNELTFREAEIS 331 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcCccchhhhhhcCCCCCCcCccchhhcHHH
Q 004419 103 DQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQE 182 (754)
Q Consensus 103 ~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (754)
.....---.+..+...+..+..++..+...+..+-.....+. .
T Consensus 332 ~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~-------------------------------------~ 374 (726)
T PRK09841 332 QLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVL-------------------------------------R 374 (726)
T ss_pred HHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-------------------------------------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004419 183 LKDSVEEAKILAADRLSEVEEAQ 205 (754)
Q Consensus 183 l~~~l~~~~~~~~~~~~e~~~l~ 205 (754)
+..+.+-.+.....+-....++.
T Consensus 375 L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 375 LSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 462
>PRK04179 rpl37e 50S ribosomal protein L37e; Reviewed
Probab=55.31 E-value=3.4 Score=28.97 Aligned_cols=23 Identities=30% Similarity=0.967 Sum_probs=0.0
Q ss_pred CcccHHHHHHHhccCCCCccccC
Q 004419 719 HLFCNPCIQRNLEIRHRKCPGCG 741 (754)
Q Consensus 719 H~fC~~C~~~~~~~~~~~Cp~C~ 741 (754)
|++|.-|....+......|-.|+
T Consensus 17 Ht~CrRCG~~syh~qK~~CasCG 39 (62)
T PRK04179 17 HIRCRRCGRHSYNVRKKYCAACG 39 (62)
T ss_pred cchhcccCcccccccccchhhcC
No 463
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=55.27 E-value=4.5 Score=31.68 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=0.0
Q ss_pred ccccccccccccc--ceeccCCCcccHHH
Q 004419 699 ILKCGVCFDRPKE--VVITKCFHLFCNPC 725 (754)
Q Consensus 699 ~~~C~iC~~~~~~--~~~~~CgH~fC~~C 725 (754)
+++|+.||-.... -..-+=|+.+|..|
T Consensus 70 EFTCssCFLV~HRSqLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 70 EFTCSSCFLVHHRSQLAREKDGQPICRDC 98 (99)
T ss_pred ceeeeeeeeEechhhhccccCCCEecccc
No 464
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.07 E-value=3.7 Score=40.04 Aligned_cols=26 Identities=27% Similarity=0.628 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHhccCCCCccccCcCc
Q 004419 718 FHLFCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 718 gH~fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
+..+|+.|..-+.. ....||+|+..|
T Consensus 254 ~GyvCs~Clsi~C~-~p~~C~~Cgt~f 279 (279)
T TIGR00627 254 IGFVCSVCLSVLCQ-YTPICKTCKTAF 279 (279)
T ss_pred ceEECCCccCCcCC-CCCCCCCCCCCC
No 465
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=55.03 E-value=5.5 Score=26.23 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred cCCCcccHHHHHHHhccCCCCccccCcCc
Q 004419 716 KCFHLFCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 716 ~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
.||+.|=.. ......||.|+..+
T Consensus 7 ~Cg~~~~~~------~~~~irC~~CG~rI 29 (44)
T smart00659 7 ECGRENEIK------SKDVVRCRECGYRI 29 (44)
T ss_pred CCCCEeecC------CCCceECCCCCceE
No 466
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=54.95 E-value=5.8 Score=26.40 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=0.0
Q ss_pred cccccccccccceeccCCCcccHHH
Q 004419 701 KCGVCFDRPKEVVITKCFHLFCNPC 725 (754)
Q Consensus 701 ~C~iC~~~~~~~~~~~CgH~fC~~C 725 (754)
.|.||.....+ -+.-.|+.+|..|
T Consensus 1 ~CiiC~~~~~~-GI~I~~~fIC~~C 24 (46)
T PF10764_consen 1 KCIICGKEKEE-GIHIYGKFICSDC 24 (46)
T ss_pred CeEeCCCcCCC-CEEEECeEehHHH
No 467
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=54.91 E-value=2.9 Score=34.59 Aligned_cols=26 Identities=27% Similarity=0.674 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHhc-cCC-CCccccCcC
Q 004419 718 FHLFCNPCIQRNLE-IRH-RKCPGCGTA 743 (754)
Q Consensus 718 gH~fC~~C~~~~~~-~~~-~~Cp~C~~~ 743 (754)
+..+|..|-..+.. ... ..||.|+..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 69 AECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred cEEEcccCCCeeecCCccCCcCcCcCCC
No 468
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=54.73 E-value=5.6 Score=39.21 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=0.0
Q ss_pred CCcccccccc-cccccceeccCCCcccHHHHHHHhccCCCCc
Q 004419 697 KAILKCGVCF-DRPKEVVITKCFHLFCNPCIQRNLEIRHRKC 737 (754)
Q Consensus 697 ~~~~~C~iC~-~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~C 737 (754)
+..+.|--|+ .....-..+|||-.||..|+.-- |.+.|
T Consensus 37 ~gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~mg---Rv~sd 75 (441)
T COG4098 37 NGKYRCNRCGNTHIELFAKLPCGCLYCRNCLMMG---RVRSD 75 (441)
T ss_pred cCcEEehhcCCcchhhhcccccceEeehhhhhcc---ccccc
No 469
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=54.49 E-value=6.9 Score=35.88 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=0.0
Q ss_pred cccccccccccccceec-cCCCcccHHHHHHHhc-cCCCCccc--cCcCcCCCCCcc
Q 004419 699 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLE-IRHRKCPG--CGTAFGQSDVRF 751 (754)
Q Consensus 699 ~~~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~-~~~~~Cp~--C~~~~~~~d~~~ 751 (754)
.++|||-..++-.|++. +|.|.|-.+=|.+... ..-+-||. |......+++..
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~ 245 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVC 245 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhh
No 470
>PRK12496 hypothetical protein; Provisional
Probab=54.15 E-value=3.7 Score=36.57 Aligned_cols=23 Identities=22% Similarity=0.668 Sum_probs=0.0
Q ss_pred cHHHHHHH-hccCCCCccccCcCc
Q 004419 722 CNPCIQRN-LEIRHRKCPGCGTAF 744 (754)
Q Consensus 722 C~~C~~~~-~~~~~~~Cp~C~~~~ 744 (754)
|..|...+ .......||.||.++
T Consensus 130 C~gC~~~~~~~~~~~~C~~CG~~~ 153 (164)
T PRK12496 130 CKGCKKKYPEDYPDDVCEICGSPV 153 (164)
T ss_pred CCCCCccccCCCCCCcCCCCCChh
No 471
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=54.10 E-value=1.7e+02 Score=26.37 Aligned_cols=167 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 004419 460 ANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEME----TIGQAFEDMQTQNQHLLQQVA 535 (754)
Q Consensus 460 ~~~~~~~~~~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~----~l~~~~~~~~~~~~~~~~~~~ 535 (754)
+..++..++..|..++-+-......+..+..+......-+......-.....+.. .+...+........-+..++.
T Consensus 2 visALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLe 81 (178)
T PF14073_consen 2 VISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLE 81 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004419 536 ERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTK 615 (754)
Q Consensus 536 ~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (754)
.+...+.....+...+-..-..+..+...-...+......++.+..+...+...-.-....+..++..+..-.....-+.
T Consensus 82 yMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQ 161 (178)
T PF14073_consen 82 YMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQ 161 (178)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 004419 616 WELADAEKELK 626 (754)
Q Consensus 616 ~~~~~l~~~~~ 626 (754)
.....++..+.
T Consensus 162 dkAaqLQt~lE 172 (178)
T PF14073_consen 162 DKAAQLQTGLE 172 (178)
T ss_pred HHHHHHHhhHH
No 472
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=53.93 E-value=5.1 Score=32.93 Aligned_cols=24 Identities=25% Similarity=0.736 Sum_probs=0.0
Q ss_pred ccccccccccccceeccCCCcccHHH
Q 004419 700 LKCGVCFDRPKEVVITKCFHLFCNPC 725 (754)
Q Consensus 700 ~~C~iC~~~~~~~~~~~CgH~fC~~C 725 (754)
..|+-|+... .+-..|+|.||..|
T Consensus 43 ~~C~~Cg~~~--~~~~SCk~R~CP~C 66 (111)
T PF14319_consen 43 YRCEDCGHEK--IVYNSCKNRHCPSC 66 (111)
T ss_pred eecCCCCceE--EecCcccCcCCCCC
No 473
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=53.76 E-value=2.1 Score=30.96 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=0.0
Q ss_pred ccc--ccccccc-----c--eecc-CCCcccHHHHHHHhccCCCCc
Q 004419 702 CGV--CFDRPKE-----V--VITK-CFHLFCNPCIQRNLEIRHRKC 737 (754)
Q Consensus 702 C~i--C~~~~~~-----~--~~~~-CgH~fC~~C~~~~~~~~~~~C 737 (754)
||- |...+.. . +.-+ |||.||..|...|.. ...|
T Consensus 21 Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~--~~~C 64 (64)
T PF01485_consen 21 CPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPWHE--GVTC 64 (64)
T ss_dssp -TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSESCT--TS-H
T ss_pred CCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcccCC--CCCC
No 474
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.44 E-value=20 Score=39.69 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHhccCCcccccccccc-------cccceeccCCCcccHH
Q 004419 654 ENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKAILKCGVCFDR-------PKEVVITKCFHLFCNP 724 (754)
Q Consensus 654 ~~~~~~~~~~~~e~~~~~~~l~~l~~~~~~--~~~~~l~~e~~~~~~~~~C~iC~~~-------~~~~~~~~CgH~fC~~ 724 (754)
+.+..-+.....+++-...-..-+...... ...-..+..--...-.-.|+.|+++ |...+...|||+|-..
T Consensus 737 dsl~Kil~dy~~q~el~~~c~~i~~nd~~~l~~k~~~~~~~Gv~v~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~ 816 (846)
T KOG2066|consen 737 DSLVKILQDYNLQLELRQGCYDILKNDSKSLLNKFLKTARRGVLVSVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKE 816 (846)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeEeehhhhhhhcccccccCcccceeeEEEccchhhhc
Q ss_pred HHHHHhccCCCCccccCcCcCCCC
Q 004419 725 CIQRNLEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 725 C~~~~~~~~~~~Cp~C~~~~~~~d 748 (754)
|+....-.+. |-.|.......|
T Consensus 817 c~~~~~~~~~--~~~~~~~~~~~~ 838 (846)
T KOG2066|consen 817 CLMMESLRNA--CNIESGKNRTPD 838 (846)
T ss_pred ccccHHHhcc--cChhhceecCcc
No 475
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=53.11 E-value=6 Score=38.69 Aligned_cols=44 Identities=20% Similarity=0.447 Sum_probs=0.0
Q ss_pred CCccccccccccccc----------ceeccCCCcccHHHHHHHhcc-----------CCCCcccc
Q 004419 697 KAILKCGVCFDRPKE----------VVITKCFHLFCNPCIQRNLEI-----------RHRKCPGC 740 (754)
Q Consensus 697 ~~~~~C~iC~~~~~~----------~~~~~CgH~fC~~C~~~~~~~-----------~~~~Cp~C 740 (754)
+..+.||-|+..|.. ..++.=.|.-|..|...+... ..-+||.|
T Consensus 205 eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplC 269 (467)
T KOG3608|consen 205 EKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLC 269 (467)
T ss_pred CeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhccccccc
No 476
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=52.94 E-value=3.7 Score=37.29 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=0.0
Q ss_pred ccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 721 FCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 721 fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
+|..|-..... |...|+.|+.++..-|.+..|+
T Consensus 50 ~C~~C~~~kp~-Rs~HC~~C~~CV~~~DHHC~w~ 82 (174)
T PF01529_consen 50 YCSTCKIIKPP-RSHHCRVCNRCVLRFDHHCPWL 82 (174)
T ss_pred ECcccCCcCCC-cceeccccccccccccccchhh
No 477
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=52.79 E-value=10 Score=39.98 Aligned_cols=52 Identities=17% Similarity=0.373 Sum_probs=0.0
Q ss_pred ccccccccccccc--------ceeccCCCcccHHHHHHHhccCCCCccccCcCcCCCCCcccCC
Q 004419 699 ILKCGVCFDRPKE--------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 754 (754)
Q Consensus 699 ~~~C~iC~~~~~~--------~~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~~~~d~~~~~~ 754 (754)
...|+.|++.|+. .+.. ||| +-..=+...+......||.|+.++. +++...|
T Consensus 88 lv~c~~c~~~yRADHLiEe~l~~~~-~~~-~~~~e~~~ii~~~~ir~p~~g~~l~--~v~~FNL 147 (558)
T COG0423 88 LVECKKCGERYRADHLIEEYLGKDG-HGN-MSPEELTEIIREYDIRCPECGGELN--EVREFNL 147 (558)
T ss_pred eeeccccchhhhhhHHHHHHhhhcc-ccc-CCHHHHHHHHHHcCCcCCCcCCccC--Ccceeee
No 478
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=52.72 E-value=5.5 Score=36.19 Aligned_cols=25 Identities=20% Similarity=0.590 Sum_probs=0.0
Q ss_pred cccHHHHHHHhccCCCCccccCcCcC
Q 004419 720 LFCNPCIQRNLEIRHRKCPGCGTAFG 745 (754)
Q Consensus 720 ~fC~~C~~~~~~~~~~~Cp~C~~~~~ 745 (754)
..|+-|+.-+.. +.+.||.|...|+
T Consensus 261 fvCsVCLsvfc~-p~~~C~~C~skF~ 285 (296)
T COG5242 261 FVCSVCLSVFCR-PVPVCKKCKSKFS 285 (296)
T ss_pred eehhhhheeecC-CcCcCcccccccc
No 479
>PRK04325 hypothetical protein; Provisional
Probab=52.57 E-value=98 Score=23.26 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004419 486 DASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERD 538 (754)
Q Consensus 486 ~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~ 538 (754)
..+...+..|+..+.-.+.-++.|+..+......+..+...+..+..++.++.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 480
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=52.46 E-value=12 Score=26.21 Aligned_cols=38 Identities=29% Similarity=0.725 Sum_probs=0.0
Q ss_pred cccccccccc----cceec--cCCCc-c--cHHHHHHHhccCCCCccccC
Q 004419 701 KCGVCFDRPK----EVVIT--KCFHL-F--CNPCIQRNLEIRHRKCPGCG 741 (754)
Q Consensus 701 ~C~iC~~~~~----~~~~~--~CgH~-f--C~~C~~~~~~~~~~~Cp~C~ 741 (754)
.|..|+.... .+... .||+. . |..|-... ....||.|+
T Consensus 9 ~CtSCg~~i~~~~~~~~F~CPnCG~~~I~RC~~CRk~~---~~Y~CP~CG 55 (59)
T PRK14890 9 KCTSCGIEIAPREKAVKFLCPNCGEVIIYRCEKCRKQS---NPYTCPKCG 55 (59)
T ss_pred cccCCCCcccCCCccCEeeCCCCCCeeEeechhHHhcC---CceECCCCC
No 481
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=52.45 E-value=4.4 Score=23.06 Aligned_cols=10 Identities=60% Similarity=1.497 Sum_probs=0.0
Q ss_pred CccccCcCcC
Q 004419 736 KCPGCGTAFG 745 (754)
Q Consensus 736 ~Cp~C~~~~~ 745 (754)
.||.|+..|.
T Consensus 16 ~C~~C~k~F~ 25 (26)
T PF13465_consen 16 KCPYCGKSFS 25 (26)
T ss_dssp EESSSSEEES
T ss_pred CCCCCcCeeC
No 482
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=52.39 E-value=6.5 Score=26.39 Aligned_cols=27 Identities=26% Similarity=0.575 Sum_probs=0.0
Q ss_pred eeccCCCcccHHHHHHHhccCCCCccccCcCc
Q 004419 713 VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 744 (754)
Q Consensus 713 ~~~~CgH~fC~~C~~~~~~~~~~~Cp~C~~~~ 744 (754)
+...||-.| ......+...||.|+..+
T Consensus 8 ~C~~Cg~~~-----~~~~~~~~irCp~Cg~rI 34 (49)
T COG1996 8 KCARCGREV-----ELDQETRGIRCPYCGSRI 34 (49)
T ss_pred EhhhcCCee-----ehhhccCceeCCCCCcEE
No 483
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=52.35 E-value=1.6e+02 Score=25.77 Aligned_cols=119 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 513 METIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA 592 (754)
Q Consensus 513 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (754)
+..+-.-+-++-.....-......+...+..+..+...+...+..+...+..++.++.........+...+..+...++.
T Consensus 33 ~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 33 DVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 004419 593 CLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTS 634 (754)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 634 (754)
...++..+...+. .....+..++.....++..++..+..
T Consensus 113 ~kee~~klk~~~~---~~~tq~~~e~rkke~E~~kLk~rL~q 151 (151)
T PF11559_consen 113 EKEELQKLKNQLQ---QRKTQYEHELRKKEREIEKLKERLNQ 151 (151)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcC
No 484
>PRK04406 hypothetical protein; Provisional
Probab=52.34 E-value=1e+02 Score=23.29 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004419 81 KEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEES 136 (754)
Q Consensus 81 ~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~ 136 (754)
...+..+...+..++.++.-....++.+...+...+..+..+..++..+...+...
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 485
>PHA00733 hypothetical protein
Probab=51.95 E-value=9.7 Score=32.30 Aligned_cols=49 Identities=18% Similarity=0.379 Sum_probs=0.0
Q ss_pred Ccccccccccccccceec--c-------------------CCCcc-cHHHHHHHhc--cCCCCccccCcCcCC
Q 004419 698 AILKCGVCFDRPKEVVIT--K-------------------CFHLF-CNPCIQRNLE--IRHRKCPGCGTAFGQ 746 (754)
Q Consensus 698 ~~~~C~iC~~~~~~~~~~--~-------------------CgH~f-C~~C~~~~~~--~~~~~Cp~C~~~~~~ 746 (754)
..+.|.+|...|.+|..+ . ||..| ...=+..+.. .....||.|+..|..
T Consensus 39 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~ 111 (128)
T PHA00733 39 KRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRN 111 (128)
T ss_pred hhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCC
No 486
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=51.83 E-value=3.8 Score=29.09 Aligned_cols=18 Identities=22% Similarity=0.866 Sum_probs=0.0
Q ss_pred ccccC----------cCcCCCCCcccCC
Q 004419 737 CPGCG----------TAFGQSDVRFVKI 754 (754)
Q Consensus 737 Cp~C~----------~~~~~~d~~~~~~ 754 (754)
||.|| ..+++.|+-.||+
T Consensus 18 C~~Cr~HA~~ai~kNNiMSs~DiNyIy~ 45 (70)
T PF04805_consen 18 CPECRIHAKEAIQKNNIMSSNDINYIYF 45 (70)
T ss_pred CHHHHHHHHHHHHhcCccccCCccchHH
No 487
>PRK00736 hypothetical protein; Provisional
Probab=51.79 E-value=94 Score=22.86 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=0.0
Q ss_pred HhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004419 487 ASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERD 538 (754)
Q Consensus 487 ~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~ 538 (754)
++...+..|+..+.-.+.-++.|+..+....+.+..+...+..+..++....
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 488
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=51.77 E-value=81 Score=22.06 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004419 468 QQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAF 520 (754)
Q Consensus 468 ~~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~ 520 (754)
..++..+..++..|..+++.+..++..+...+.....+.......|+.+-..+
T Consensus 2 ~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 2 NAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
No 489
>PRK11519 tyrosine kinase; Provisional
Probab=51.76 E-value=4.3e+02 Score=30.49 Aligned_cols=148 Identities=11% Similarity=0.168 Sum_probs=0.0
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004419 20 ILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHK 99 (754)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 99 (754)
...+++..+..+.....+.+..+...+..++.++...+..+..+....+.+ .+.......-..+..++.++..++.+..
T Consensus 250 ~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~v-d~~~ea~~~l~~~~~l~~ql~~l~~~~~ 328 (719)
T PRK11519 250 TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV-DLPLEAKAVLDSMVNIDAQLNELTFKEA 328 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcCccchhhhhhcCCCCCCcCccchhhc
Q 004419 100 EYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMD 179 (754)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (754)
.+......-.-.+..+......+..+++.+...+..+......+.
T Consensus 329 ~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~----------------------------------- 373 (719)
T PRK11519 329 EISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIV----------------------------------- 373 (719)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-----------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 180 LQELKDSVEEAKILAADRLSEVEEAQ 205 (754)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~e~~~l~ 205 (754)
.++.+.+-.+.....+.....++.
T Consensus 374 --~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 374 --RLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHh
No 490
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.74 E-value=2.2e+02 Score=26.98 Aligned_cols=169 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 004419 459 AANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFE-----DMQTQNQHLLQQ 533 (754)
Q Consensus 459 ~~~~~~~~~~~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~-----~~~~~~~~~~~~ 533 (754)
.+......+..-...+...|..+...+......+.........++.++..+...+..+..... .-..........
T Consensus 13 ~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~ 92 (221)
T PF04012_consen 13 NINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQR 92 (221)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004419 534 VAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLET 613 (754)
Q Consensus 534 ~~~l~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (754)
...++..+..+...+......+..+...+..+...+..+......+..... .......+...+.... .......++.
T Consensus 93 k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~-~a~a~~~~~~~~~~~~--~~~a~~~~er 169 (221)
T PF04012_consen 93 KADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN-AAKAQKKVNEALASFS--VSSAMDSFER 169 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCC--ccchHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004419 614 TKWELADAEKELKWLKS 630 (754)
Q Consensus 614 ~~~~~~~l~~~~~~l~~ 630 (754)
+...+..+.........
T Consensus 170 ~e~ki~~~ea~a~a~~e 186 (221)
T PF04012_consen 170 MEEKIEEMEARAEASAE 186 (221)
T ss_pred HHHHHHHHHHHHHHHHH
No 491
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=51.73 E-value=8.5 Score=33.66 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred eeccCCCcccHHHHHHH-hccCCCCccccCcCcCCCC
Q 004419 713 VITKCFHLFCNPCIQRN-LEIRHRKCPGCGTAFGQSD 748 (754)
Q Consensus 713 ~~~~CgH~fC~~C~~~~-~~~~~~~Cp~C~~~~~~~d 748 (754)
+...||+.|=+.=.... ...+...||.|+..+...|
T Consensus 101 ~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 101 KCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEEDD 137 (147)
T ss_pred ECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEcC
No 492
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=51.32 E-value=5.6 Score=42.91 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=0.0
Q ss_pred cccccccccccc------ceeccCCCcc--cHHHHHHHhccCCCCccccCcCcCCC
Q 004419 700 LKCGVCFDRPKE------VVITKCFHLF--CNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 700 ~~C~iC~~~~~~------~~~~~CgH~f--C~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
+.||-|...|.. |++-+=.-++ |..|....-=.+-+.||.|..+.+..
T Consensus 1132 ~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs~~~~~ 1187 (1189)
T KOG2041|consen 1132 LQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHSMESFR 1187 (1189)
T ss_pred CCChhhcCcCceeeccCCccccceEEEccccccccccccccccccCccccChhhcc
No 493
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.31 E-value=10 Score=35.86 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred ccCCccccccccc-----ccccceeccCCCcccHHHHHHHhc--------------cCCCCccccC
Q 004419 695 DCKAILKCGVCFD-----RPKEVVITKCFHLFCNPCIQRNLE--------------IRHRKCPGCG 741 (754)
Q Consensus 695 ~~~~~~~C~iC~~-----~~~~~~~~~CgH~fC~~C~~~~~~--------------~~~~~Cp~C~ 741 (754)
.+.....|++|.. ....++..+|||+||-.|..-|.. .....||.|+
T Consensus 91 ~~~~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~~~k~t~~~h~as~~~l~~~~~~i~ 156 (271)
T COG5574 91 RFNREETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSIDLKQTANTHEASPSQLLKFLPTIR 156 (271)
T ss_pred ccccccccccccCcccccccccceeeecccccchhhhHHHHHHHHHhhcCCCCCHHHHhccCCeee
No 494
>PRK02119 hypothetical protein; Provisional
Probab=51.25 E-value=1e+02 Score=23.08 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004419 83 EAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEES 136 (754)
Q Consensus 83 ~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~ 136 (754)
.+..+...+..++.++.-....++.+...+......+..+..++..+...+...
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 495
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=51.22 E-value=9.5 Score=35.19 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred ccccccceeccCCCcc----cHHHHHHHhccCCCCccccCcCcCCC
Q 004419 706 FDRPKEVVITKCFHLF----CNPCIQRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 706 ~~~~~~~~~~~CgH~f----C~~C~~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
+......++-.|+|.| -..||... +.++||.|..-+.+.
T Consensus 148 GtFa~s~Ci~~C~~~yp~e~~ka~i~~~---~vpkC~vC~~lVKP~ 190 (314)
T KOG2682|consen 148 GTFATSHCISSCRHEYPLEWMKAKIMSE---VVPKCEVCQGLVKPD 190 (314)
T ss_pred cceeeeeehhhhcCcCCHHHHHHHHHhc---cCCCCchhhcccccc
No 496
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=51.08 E-value=82 Score=21.94 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004419 506 AEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKL 544 (754)
Q Consensus 506 ~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l 544 (754)
+.+++.++..+...+..++.++..+...+..+++.+..+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=50.92 E-value=6.6 Score=38.10 Aligned_cols=27 Identities=30% Similarity=0.820 Sum_probs=0.0
Q ss_pred cccHHHH-----HHHhccCCCCccccCcCcCCC
Q 004419 720 LFCNPCI-----QRNLEIRHRKCPGCGTAFGQS 747 (754)
Q Consensus 720 ~fC~~C~-----~~~~~~~~~~Cp~C~~~~~~~ 747 (754)
+-|..|. ......+|+ ||.|+..|...
T Consensus 247 TAC~rC~t~y~le~A~~~~wr-CpkCGg~ikKG 278 (403)
T COG1379 247 TACSRCYTRYSLEEAKSLRWR-CPKCGGKIKKG 278 (403)
T ss_pred HHHHHhhhccCcchhhhhccc-Ccccccchhhh
No 498
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=50.89 E-value=1.4e+02 Score=24.52 Aligned_cols=104 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcCccchhhhhhcCCCCCCcCccchhhcHHHH
Q 004419 104 QIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQEL 183 (754)
Q Consensus 104 ~l~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 183 (754)
.++..-..+..++.++..+..++..+...+.+...-+..+. ..+.....=..+++.....+....+..+
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~-----------~l~~d~~vyk~VG~vlv~~~~~e~~~~l 72 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELE-----------RLPDDTPVYKSVGNLLVKTDKEEAIQEL 72 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCcchhHHHhchhhheecHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004419 184 KDSVEEAKILAADRLSEVEEAQQDNINLSKQLENL 218 (754)
Q Consensus 184 ~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~el~~l 218 (754)
...++.+...+..+...+..+...+..++..+..+
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=50.81 E-value=1.6e+02 Score=25.34 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q 004419 538 DDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRIL--------------------------------- 584 (754)
Q Consensus 538 ~~~l~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~--------------------------------- 584 (754)
...+..+......+...+..+...+..+...+..+...++.+..--.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 004419 585 ------HAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTS 634 (754)
Q Consensus 585 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 634 (754)
...+.+..+...+..+...+..+...+..+...+..+...+..+..+...
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~ 140 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAAA 140 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 500
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=50.53 E-value=10 Score=26.17 Aligned_cols=16 Identities=38% Similarity=0.829 Sum_probs=0.0
Q ss_pred CCCCccccCcCcCCCC
Q 004419 733 RHRKCPGCGTAFGQSD 748 (754)
Q Consensus 733 ~~~~Cp~C~~~~~~~d 748 (754)
+.+.||.|++++-.+.
T Consensus 7 PH~HC~VCg~aIp~de 22 (64)
T COG4068 7 PHRHCVVCGKAIPPDE 22 (64)
T ss_pred CCccccccCCcCCCcc
Done!